Query 040192
Match_columns 386
No_of_seqs 181 out of 2530
Neff 10.2
Searched_HMMs 29240
Date Mon Mar 25 09:14:51 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040192.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/040192hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2id5_A Lingo-1, leucine rich r 99.9 3.5E-26 1.2E-30 219.9 25.3 299 26-351 7-315 (477)
2 4fmz_A Internalin; leucine ric 99.9 3.9E-26 1.3E-30 210.4 23.4 283 32-349 45-328 (347)
3 4fmz_A Internalin; leucine ric 99.9 2.9E-25 1E-29 204.6 24.3 277 32-342 67-344 (347)
4 3o6n_A APL1; leucine-rich repe 99.9 1.5E-25 5E-30 209.9 22.2 294 34-364 48-350 (390)
5 3v47_A TOLL-like receptor 5B a 99.9 3E-25 1E-29 212.0 22.4 305 33-362 12-401 (455)
6 3o6n_A APL1; leucine-rich repe 99.9 1.9E-24 6.4E-29 202.4 21.9 279 51-363 43-325 (390)
7 2id5_A Lingo-1, leucine rich r 99.9 2.2E-24 7.6E-29 207.3 21.7 287 32-342 33-331 (477)
8 3oja_B Anopheles plasmodium-re 99.9 2E-24 7E-29 213.1 21.8 294 34-364 54-356 (597)
9 1o6v_A Internalin A; bacterial 99.9 8.1E-24 2.8E-28 202.7 24.2 280 32-341 47-363 (466)
10 4eco_A Uncharacterized protein 99.9 8.7E-25 3E-29 217.1 17.3 339 11-363 58-543 (636)
11 3a79_B TLR6, VLRB.59, TOLL-lik 99.9 3.1E-23 1E-27 203.4 27.4 143 33-185 33-181 (562)
12 1o6v_A Internalin A; bacterial 99.9 1.6E-23 5.5E-28 200.7 23.7 282 32-350 69-393 (466)
13 3vq2_A TLR4, TOLL-like recepto 99.9 1.3E-23 4.6E-28 207.8 23.4 152 32-188 12-168 (606)
14 3oja_B Anopheles plasmodium-re 99.9 1E-23 3.6E-28 208.0 22.1 279 51-363 49-331 (597)
15 4ecn_A Leucine-rich repeat pro 99.9 1.1E-23 3.9E-28 213.5 22.1 328 24-363 315-783 (876)
16 3bz5_A Internalin-J, INLJ; leu 99.9 2.8E-23 9.6E-28 197.9 23.3 259 32-324 43-303 (457)
17 2z81_A CD282 antigen, TOLL-lik 99.9 7.6E-24 2.6E-28 207.1 19.8 161 36-200 10-177 (549)
18 3j0a_A TOLL-like receptor 5; m 99.9 4.9E-23 1.7E-27 211.1 26.2 193 33-229 6-215 (844)
19 1ogq_A PGIP-2, polygalacturona 99.9 2.9E-24 9.8E-29 195.0 14.3 250 55-348 51-308 (313)
20 4eco_A Uncharacterized protein 99.9 8E-24 2.7E-28 210.2 18.6 299 32-352 207-586 (636)
21 3t6q_A CD180 antigen; protein- 99.9 3.8E-23 1.3E-27 204.6 23.2 178 98-286 275-460 (606)
22 3v47_A TOLL-like receptor 5B a 99.9 1E-23 3.6E-28 201.3 18.4 287 32-342 31-406 (455)
23 2z7x_B TOLL-like receptor 1, v 99.9 1.4E-22 4.7E-27 196.9 26.1 143 33-185 2-150 (520)
24 4fcg_A Uncharacterized protein 99.9 1.8E-23 6.3E-28 190.8 18.7 88 76-166 81-168 (328)
25 2z80_A TOLL-like receptor 2, v 99.9 2.8E-23 9.7E-28 191.8 19.3 269 33-342 33-312 (353)
26 3rgz_A Protein brassinosteroid 99.9 2E-23 6.7E-28 211.9 19.8 298 33-351 225-558 (768)
27 2ft3_A Biglycan; proteoglycan, 99.9 1.1E-22 3.7E-27 186.3 21.7 289 33-342 35-331 (332)
28 1xku_A Decorin; proteoglycan, 99.9 5.3E-22 1.8E-26 181.5 25.8 241 33-292 33-279 (330)
29 3rgz_A Protein brassinosteroid 99.9 4.1E-23 1.4E-27 209.6 20.1 264 75-350 393-723 (768)
30 3bz5_A Internalin-J, INLJ; leu 99.9 1.1E-22 3.6E-27 194.0 21.4 261 47-349 36-304 (457)
31 3zyj_A Leucine-rich repeat-con 99.9 1.3E-22 4.5E-27 192.9 21.8 240 33-318 45-290 (440)
32 2z63_A TOLL-like receptor 4, v 99.9 1.4E-22 4.9E-27 198.9 22.5 123 33-158 30-159 (570)
33 3zyi_A Leucine-rich repeat-con 99.9 1.3E-22 4.6E-27 193.5 21.3 240 33-318 56-301 (452)
34 3t6q_A CD180 antigen; protein- 99.9 3.1E-22 1.1E-26 198.0 24.7 124 32-158 58-189 (606)
35 4fcg_A Uncharacterized protein 99.9 8.7E-23 3E-27 186.4 19.1 240 99-374 79-319 (328)
36 4ecn_A Leucine-rich repeat pro 99.9 8.8E-23 3E-27 207.0 20.8 300 32-352 492-826 (876)
37 3vq2_A TLR4, TOLL-like recepto 99.9 7.1E-23 2.4E-27 202.6 19.7 269 46-342 278-556 (606)
38 2z7x_B TOLL-like receptor 1, v 99.9 1.9E-22 6.4E-27 196.0 21.9 121 32-160 22-150 (520)
39 2z81_A CD282 antigen, TOLL-lik 99.9 1.8E-22 6.2E-27 197.3 21.0 153 32-187 27-210 (549)
40 1xku_A Decorin; proteoglycan, 99.9 5.5E-22 1.9E-26 181.3 22.7 248 55-351 32-282 (330)
41 2z63_A TOLL-like receptor 4, v 99.9 3.4E-22 1.2E-26 196.2 22.7 151 32-187 8-163 (570)
42 3a79_B TLR6, VLRB.59, TOLL-lik 99.9 6.2E-22 2.1E-26 194.1 23.4 121 32-160 53-181 (562)
43 1ziw_A TOLL-like receptor 3; i 99.9 1.1E-21 3.8E-26 196.7 25.6 150 34-188 7-160 (680)
44 2z66_A Variable lymphocyte rec 99.9 3.4E-22 1.2E-26 180.8 18.2 241 33-318 9-259 (306)
45 2z66_A Variable lymphocyte rec 99.9 2.7E-22 9.3E-27 181.4 17.5 244 56-342 9-259 (306)
46 2ft3_A Biglycan; proteoglycan, 99.9 1.4E-21 4.9E-26 178.8 20.7 257 55-342 34-305 (332)
47 1ozn_A Reticulon 4 receptor; N 99.9 4.6E-22 1.6E-26 178.1 16.7 226 26-287 6-237 (285)
48 1ziw_A TOLL-like receptor 3; i 99.9 4E-21 1.4E-25 192.7 24.8 294 32-341 26-363 (680)
49 4g8a_A TOLL-like receptor 4; l 99.9 3.1E-21 1.1E-25 191.6 23.1 150 33-187 33-187 (635)
50 1ogq_A PGIP-2, polygalacturona 99.9 9.6E-22 3.3E-26 178.3 17.4 267 9-324 23-308 (313)
51 3j0a_A TOLL-like receptor 5; m 99.9 1.6E-20 5.6E-25 192.4 24.3 152 32-187 25-188 (844)
52 3zyj_A Leucine-rich repeat-con 99.9 1.4E-20 4.9E-25 178.8 21.5 242 55-342 44-290 (440)
53 3o53_A Protein LRIM1, AGAP0063 99.9 1.9E-21 6.4E-26 176.8 14.0 239 55-347 35-278 (317)
54 3zyi_A Leucine-rich repeat-con 99.9 1.8E-20 6.1E-25 178.8 21.4 242 55-342 55-301 (452)
55 3g06_A SSPH2 (leucine-rich rep 99.9 3.9E-20 1.3E-24 181.7 24.1 264 22-342 31-295 (622)
56 4g8a_A TOLL-like receptor 4; l 99.9 2.1E-20 7.2E-25 185.6 22.1 307 32-362 53-573 (635)
57 2z80_A TOLL-like receptor 2, v 99.8 3.5E-20 1.2E-24 171.0 17.6 267 55-363 32-308 (353)
58 2xwt_C Thyrotropin receptor; s 99.8 3.4E-20 1.1E-24 161.5 15.1 214 33-286 15-237 (239)
59 1ozn_A Reticulon 4 receptor; N 99.8 6.9E-20 2.3E-24 163.9 17.5 218 57-318 14-236 (285)
60 3oja_A Leucine-rich immune mol 99.8 3.7E-20 1.3E-24 177.8 16.2 231 55-339 35-270 (487)
61 1jl5_A Outer protein YOPM; leu 99.8 1.5E-18 5.1E-23 165.1 25.4 177 32-230 72-249 (454)
62 1h6u_A Internalin H; cell adhe 99.8 2.3E-19 7.9E-24 162.2 18.5 204 42-292 30-233 (308)
63 3o53_A Protein LRIM1, AGAP0063 99.8 1.9E-20 6.4E-25 170.2 11.3 263 32-346 35-301 (317)
64 1jl5_A Outer protein YOPM; leu 99.8 7.1E-19 2.4E-23 167.4 22.6 121 55-188 132-252 (454)
65 2o6q_A Variable lymphocyte rec 99.8 5.8E-19 2E-23 156.5 19.5 208 20-263 4-216 (270)
66 3g06_A SSPH2 (leucine-rich rep 99.8 1.9E-18 6.6E-23 169.7 23.7 251 55-364 41-292 (622)
67 2z62_A TOLL-like receptor 4, v 99.8 8.4E-19 2.9E-23 156.0 19.0 216 33-286 9-235 (276)
68 1h6u_A Internalin H; cell adhe 99.8 6.2E-19 2.1E-23 159.4 17.0 211 58-324 23-233 (308)
69 3oja_A Leucine-rich immune mol 99.8 4E-20 1.4E-24 177.6 8.6 233 33-317 36-272 (487)
70 4ay9_X Follicle-stimulating ho 99.8 8E-19 2.7E-23 161.6 16.2 239 33-316 11-255 (350)
71 1wwl_A Monocyte differentiatio 99.8 3.2E-20 1.1E-24 168.2 6.6 238 55-341 44-306 (312)
72 3rfs_A Internalin B, repeat mo 99.8 4.3E-19 1.5E-23 157.5 12.6 140 42-187 30-171 (272)
73 3rfs_A Internalin B, repeat mo 99.8 1.1E-18 3.7E-23 154.9 14.4 223 55-330 20-245 (272)
74 1p9a_G Platelet glycoprotein I 99.8 3.4E-18 1.2E-22 153.1 17.6 198 51-286 8-206 (290)
75 2o6q_A Variable lymphocyte rec 99.8 7.2E-18 2.5E-22 149.5 19.5 196 55-286 17-216 (270)
76 2z62_A TOLL-like receptor 4, v 99.8 4.1E-18 1.4E-22 151.6 17.6 218 58-318 11-235 (276)
77 2xwt_C Thyrotropin receptor; s 99.8 1.6E-18 5.5E-23 150.8 14.0 198 102-344 32-239 (239)
78 1wwl_A Monocyte differentiatio 99.8 1.9E-19 6.3E-24 163.2 7.0 223 55-318 64-307 (312)
79 2ast_B S-phase kinase-associat 99.8 5.6E-19 1.9E-23 161.7 9.6 221 56-317 49-282 (336)
80 2ast_B S-phase kinase-associat 99.8 1.2E-18 4.2E-23 159.4 11.5 244 33-323 49-308 (336)
81 3m19_A Variable lymphocyte rec 99.8 2.9E-17 1E-21 143.9 17.8 187 19-232 3-193 (251)
82 1p9a_G Platelet glycoprotein I 99.7 3E-17 1E-21 146.9 16.5 194 32-264 11-207 (290)
83 1h6t_A Internalin B; cell adhe 99.7 6.2E-17 2.1E-21 145.0 15.8 169 73-286 43-211 (291)
84 4ay9_X Follicle-stimulating ho 99.7 9.4E-17 3.2E-21 147.8 17.4 236 57-340 12-255 (350)
85 1z7x_W Ribonuclease inhibitor; 99.7 7.7E-19 2.6E-23 167.8 2.3 294 32-345 29-383 (461)
86 3ogk_B Coronatine-insensitive 99.7 1.5E-17 5.2E-22 163.9 11.4 294 32-347 165-528 (592)
87 1z7x_W Ribonuclease inhibitor; 99.7 5.4E-18 1.8E-22 162.0 7.4 300 32-345 57-411 (461)
88 1m9s_A Internalin B; cell inva 99.7 3.2E-17 1.1E-21 160.7 12.2 136 42-187 32-167 (605)
89 2ca6_A RAN GTPase-activating p 99.7 4.8E-18 1.6E-22 158.6 5.2 38 122-159 91-133 (386)
90 1h6t_A Internalin B; cell adhe 99.7 2.4E-16 8.1E-21 141.2 15.8 181 38-263 31-211 (291)
91 3m19_A Variable lymphocyte rec 99.7 5.9E-16 2E-20 135.6 17.0 174 55-263 15-190 (251)
92 3goz_A Leucine-rich repeat-con 99.7 2.6E-17 9E-22 152.2 8.4 252 37-318 4-295 (362)
93 2ca6_A RAN GTPase-activating p 99.7 5E-17 1.7E-21 151.7 9.3 232 49-318 28-314 (386)
94 4glp_A Monocyte differentiatio 99.7 1.3E-16 4.5E-21 144.3 10.6 77 250-340 222-303 (310)
95 3goz_A Leucine-rich repeat-con 99.7 2E-16 6.7E-21 146.3 12.0 252 59-341 3-294 (362)
96 4ezg_A Putative uncharacterize 99.7 6.2E-16 2.1E-20 130.2 13.0 152 49-230 40-193 (197)
97 3ogk_B Coronatine-insensitive 99.7 4.3E-17 1.5E-21 160.7 6.4 291 32-342 139-499 (592)
98 4glp_A Monocyte differentiatio 99.7 3E-16 1E-20 141.9 11.3 225 55-318 65-305 (310)
99 2p1m_B Transport inhibitor res 99.7 3E-17 1E-21 161.8 5.1 62 274-343 455-518 (594)
100 2o6s_A Variable lymphocyte rec 99.6 2.9E-15 9.9E-20 127.2 15.4 151 33-188 9-163 (208)
101 1m9s_A Internalin B; cell inva 99.6 1.4E-15 4.7E-20 149.2 14.6 191 55-291 22-212 (605)
102 3e6j_A Variable lymphocyte rec 99.6 3.4E-15 1.2E-19 128.8 15.1 151 33-188 21-174 (229)
103 4ezg_A Putative uncharacterize 99.6 3.6E-15 1.2E-19 125.5 14.1 148 32-187 45-195 (197)
104 1xeu_A Internalin C; cellular 99.6 2.7E-15 9.1E-20 132.2 13.5 163 36-232 24-186 (263)
105 2p1m_B Transport inhibitor res 99.6 8.7E-17 3E-21 158.5 2.3 306 13-343 113-493 (594)
106 2v9t_B SLIT homolog 2 protein 99.6 9.1E-15 3.1E-19 125.3 13.8 151 33-188 13-167 (220)
107 1xeu_A Internalin C; cellular 99.6 1.6E-15 5.4E-20 133.7 9.2 123 55-187 20-142 (263)
108 2o6s_A Variable lymphocyte rec 99.6 8.9E-15 3.1E-19 124.2 13.1 165 57-263 10-176 (208)
109 2v70_A SLIT-2, SLIT homolog 2 99.6 1.8E-14 6E-19 123.5 14.0 151 33-188 13-168 (220)
110 2xot_A Amphoterin-induced prot 99.6 1.1E-14 3.7E-19 134.5 12.9 151 33-188 20-178 (361)
111 2v9t_B SLIT homolog 2 protein 99.6 2.4E-14 8.1E-19 122.6 13.6 154 56-234 13-168 (220)
112 3cvr_A Invasion plasmid antige 99.6 6E-14 2.1E-18 136.2 17.7 181 55-286 60-241 (571)
113 2v70_A SLIT-2, SLIT homolog 2 99.6 4.2E-14 1.5E-18 121.1 13.4 155 56-235 13-170 (220)
114 3cvr_A Invasion plasmid antige 99.5 1.4E-13 4.7E-18 133.7 16.8 188 28-266 56-243 (571)
115 3e6j_A Variable lymphocyte rec 99.5 1.6E-13 5.5E-18 118.2 14.8 151 55-231 20-172 (229)
116 2xot_A Amphoterin-induced prot 99.5 7.9E-14 2.7E-18 128.7 13.0 176 56-263 20-200 (361)
117 2ell_A Acidic leucine-rich nuc 99.5 1E-13 3.5E-18 113.4 10.3 129 55-188 25-162 (168)
118 2je0_A Acidic leucine-rich nuc 99.5 1.6E-13 5.5E-18 109.8 9.5 122 55-181 18-148 (149)
119 1a9n_A U2A', U2A'; complex (nu 99.5 1.3E-13 4.4E-18 113.7 8.8 136 47-188 13-155 (176)
120 1dce_A Protein (RAB geranylger 99.4 4.1E-15 1.4E-19 144.9 -2.5 104 149-291 442-548 (567)
121 1a9n_A U2A', U2A'; complex (nu 99.4 6.8E-13 2.3E-17 109.4 9.9 127 32-160 20-152 (176)
122 2ell_A Acidic leucine-rich nuc 99.4 1.6E-12 5.6E-17 106.2 11.1 131 32-166 25-164 (168)
123 2je0_A Acidic leucine-rich nuc 99.4 1.1E-12 3.8E-17 104.9 9.1 111 73-188 14-128 (149)
124 2wfh_A SLIT homolog 2 protein 99.4 3.8E-12 1.3E-16 106.4 12.6 121 34-158 13-136 (193)
125 2o6r_A Variable lymphocyte rec 99.4 5.6E-12 1.9E-16 103.9 13.2 126 58-187 11-138 (177)
126 2wfh_A SLIT homolog 2 protein 99.4 5.6E-12 1.9E-16 105.4 12.9 128 56-188 12-141 (193)
127 1w8a_A SLIT protein; signaling 99.4 3.1E-12 1.1E-16 106.9 11.1 108 77-187 30-140 (192)
128 1w8a_A SLIT protein; signaling 99.3 7.1E-12 2.4E-16 104.7 11.9 129 33-165 10-143 (192)
129 4b8c_D Glucose-repressible alc 99.3 4.6E-13 1.6E-17 134.4 4.8 110 73-187 221-330 (727)
130 2o6r_A Variable lymphocyte rec 99.3 1.8E-11 6.1E-16 100.8 12.9 129 33-165 9-141 (177)
131 3sb4_A Hypothetical leucine ri 99.3 4.6E-12 1.6E-16 115.3 9.5 98 250-360 224-325 (329)
132 4b8c_D Glucose-repressible alc 99.3 4.7E-12 1.6E-16 127.1 10.0 135 49-188 220-356 (727)
133 3sb4_A Hypothetical leucine ri 99.3 2.7E-11 9.1E-16 110.2 13.2 276 33-337 27-327 (329)
134 4fdw_A Leucine rich hypothetic 99.3 5E-10 1.7E-14 104.3 21.3 262 55-372 114-386 (401)
135 1dce_A Protein (RAB geranylger 99.3 2.1E-11 7.3E-16 118.7 12.4 105 77-188 442-548 (567)
136 1ds9_A Outer arm dynein; leuci 99.2 8.9E-13 3.1E-17 110.9 -1.0 139 42-187 36-186 (198)
137 1ds9_A Outer arm dynein; leuci 99.1 2.7E-12 9.2E-17 107.9 -1.2 15 271-285 136-150 (198)
138 4fdw_A Leucine rich hypothetic 99.1 4.3E-09 1.5E-13 98.0 20.3 216 55-323 136-360 (401)
139 3g39_A Variable lymphocyte rec 99.1 5.6E-10 1.9E-14 91.2 10.9 56 55-111 31-88 (170)
140 2r9u_A Variable lymphocyte rec 99.1 5.9E-10 2E-14 91.4 10.9 56 55-111 34-91 (174)
141 2r9u_A Variable lymphocyte rec 99.1 6E-10 2.1E-14 91.3 10.9 103 56-161 14-118 (174)
142 3g39_A Variable lymphocyte rec 99.0 1.2E-09 4.1E-14 89.2 10.8 104 55-161 10-115 (170)
143 2ifg_A High affinity nerve gro 98.8 1.9E-08 6.5E-13 91.9 10.1 102 34-138 11-116 (347)
144 2ifg_A High affinity nerve gro 98.8 2.8E-08 9.5E-13 90.8 10.0 103 57-161 11-116 (347)
145 3un9_A NLR family member X1; l 98.8 1.8E-09 6.3E-14 99.5 2.0 157 55-231 73-252 (372)
146 4fs7_A Uncharacterized protein 98.7 4.3E-07 1.5E-11 84.5 17.5 79 273-364 295-374 (394)
147 3e4g_A ATP synthase subunit S, 98.7 6.3E-09 2.2E-13 84.2 4.1 39 308-346 115-154 (176)
148 3e4g_A ATP synthase subunit S, 98.7 1.6E-08 5.6E-13 81.8 5.4 72 215-291 82-155 (176)
149 3un9_A NLR family member X1; l 98.7 8.6E-09 2.9E-13 95.0 3.5 153 32-188 73-254 (372)
150 2ra8_A Uncharacterized protein 98.6 1.2E-07 4E-12 86.8 9.1 111 217-341 192-317 (362)
151 4gt6_A Cell surface protein; l 98.6 3.8E-06 1.3E-10 78.0 19.2 121 55-182 65-191 (394)
152 4fs7_A Uncharacterized protein 98.5 2.3E-06 8E-11 79.5 15.9 105 73-184 159-264 (394)
153 4gt6_A Cell surface protein; l 98.5 2.1E-05 7.2E-10 73.0 21.3 77 250-339 286-365 (394)
154 2ra8_A Uncharacterized protein 98.4 6.5E-07 2.2E-11 81.9 8.2 13 305-317 305-317 (362)
155 4h09_A Hypothetical leucine ri 98.3 5.8E-05 2E-09 69.5 20.3 125 47-182 40-167 (379)
156 1io0_A Tropomodulin; LRR prote 97.9 6.9E-06 2.4E-10 67.6 4.7 88 98-187 62-165 (185)
157 1io0_A Tropomodulin; LRR prote 97.9 1.2E-05 4.2E-10 66.1 6.1 108 49-159 32-162 (185)
158 4h09_A Hypothetical leucine ri 97.8 0.0038 1.3E-07 57.2 20.4 244 72-350 42-327 (379)
159 3rw6_A Nuclear RNA export fact 97.7 4.9E-05 1.7E-09 66.0 6.4 60 99-160 168-232 (267)
160 3rw6_A Nuclear RNA export fact 97.7 1.3E-05 4.6E-10 69.6 2.7 79 73-154 167-257 (267)
161 3rfe_A Platelet glycoprotein I 95.4 0.024 8E-07 43.2 5.4 54 129-185 12-67 (130)
162 3rfe_A Platelet glycoprotein I 95.2 0.03 1E-06 42.6 5.6 52 33-86 10-65 (130)
163 1pgv_A TMD-1, tropomodulin TMD 95.1 0.031 1E-06 45.8 5.4 110 73-184 38-168 (197)
164 1pgv_A TMD-1, tropomodulin TMD 94.3 0.061 2.1E-06 44.0 5.3 102 55-158 42-167 (197)
165 2lz0_A Uncharacterized protein 58.4 9.5 0.00032 27.0 3.5 37 73-111 17-53 (100)
166 2lz0_A Uncharacterized protein 50.3 14 0.0005 26.0 3.4 39 143-183 15-53 (100)
No 1
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.95 E-value=3.5e-26 Score=219.87 Aligned_cols=299 Identities=20% Similarity=0.232 Sum_probs=235.8
Q ss_pred hccccccccEEEEcCCCCCCCCcccccccCccEEEecCCcccccCC--CCCCCCCcEEecccCcCCCcCChhhhcCCCcC
Q 040192 26 SDIEEEKEEHLVYAGAGLSETPDVRKWEKNVRRLSLMENQIENLSE--VPTCPYLRTLFLNNNAPLRRIDSGFFQSMPRL 103 (386)
Q Consensus 26 ~~~~~~~~~~l~~~~~~l~~~p~~~~~~~~L~~L~l~~~~~~~~~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L 103 (386)
|.|.. ....+.+.+.++..+|. .++++++.|++++|.+..++. ...+++|++|++++| .+..+.+..+.++++|
T Consensus 7 C~C~~-~~~~v~c~~~~l~~ip~--~~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n-~i~~~~~~~~~~l~~L 82 (477)
T 2id5_A 7 CECSA-QDRAVLCHRKRFVAVPE--GIPTETRLLDLGKNRIKTLNQDEFASFPHLEELELNEN-IVSAVEPGAFNNLFNL 82 (477)
T ss_dssp CEEET-TTTEEECCSCCCSSCCS--CCCTTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTS-CCCEECTTTTTTCTTC
T ss_pred CeECC-CCCEEEeCCCCcCcCCC--CCCCCCcEEECCCCccceECHhHccCCCCCCEEECCCC-ccCEeChhhhhCCccC
Confidence 44443 34678899999999886 233489999999999999654 388999999999999 7777766668999999
Q ss_pred ceecccCCccccccch-hhcCCCccCEEEcCCCCCCcc-cHhhhccCCCCEEEccCCccccccchhhhcCCCCCcEEEEe
Q 040192 104 NVLNLSGAIRLYSFPL-GISKLISLQHLDLSNTGIAEL-PKELNALVNLTCLNLEETWRLTVIPRRLISSFSSLHVLRIF 181 (386)
Q Consensus 104 ~~L~l~~~~~~~~~~~-~~~~l~~L~~L~l~~~~i~~l-~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~ 181 (386)
++|++++| .+..+|. .+..+++|++|++++|.+..+ +..+..+++|+.|++++| .+..++...+..+++|++|+++
T Consensus 83 ~~L~L~~n-~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~ 160 (477)
T 2id5_A 83 RTLGLRSN-RLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDN-DLVYISHRAFSGLNSLEQLTLE 160 (477)
T ss_dssp CEEECCSS-CCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCT-TCCEECTTSSTTCTTCCEEEEE
T ss_pred CEEECCCC-cCCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCC-ccceeChhhccCCCCCCEEECC
Confidence 99999999 8888865 578999999999999999865 457889999999999999 4555555458999999999999
Q ss_pred ccCCcccc--CCCcCccccccc-ceeecCCccccccccccCCcEEEeeccCCccchhcccccccccCccccccCcccEEE
Q 040192 182 GSGYSYSD--GMIGNGEFEQLC-GFRRSKSLDVSALADLKRLNRLKIAECYGLAELKMDYKSVVQNTGQSFVFHSLKKFQ 258 (386)
Q Consensus 182 ~~~~~~~~--~~~~l~~L~~L~-~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ 258 (386)
+|.+.... .+..+++|+.|. ..+.+.+.....+..+++|+.|++++|......+...+ ...+|+.|+
T Consensus 161 ~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~----------~~~~L~~L~ 230 (477)
T 2id5_A 161 KCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCL----------YGLNLTSLS 230 (477)
T ss_dssp SCCCSSCCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTT----------TTCCCSEEE
T ss_pred CCcCcccChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccc----------cCccccEEE
Confidence 99887762 245667777776 33344444455678889999999999887765544443 456999999
Q ss_pred ecCCCCCCccc--cccCCCCCcEEeecCCCccchhhccCcccccCCCCcccccceeeeccccccccc-cCCCcCCCCccE
Q 040192 259 ISYCKELKDLT--FLIFAPNLKSIEVDSCYALEEIVSDVPEVMMGNLNPFAQFHFLCFSYLPNLKSI-YRKPLPFPHLKE 335 (386)
Q Consensus 259 l~~~~~l~~~~--~l~~l~~L~~L~l~~c~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~-~~~~~~~~~L~~ 335 (386)
+++| .++.++ .+..+++|+.|+|++|. ++.+.. ..+..+++|++|+++++ .+..+ +.....+++|+.
T Consensus 231 l~~n-~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~-------~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~ 300 (477)
T 2id5_A 231 ITHC-NLTAVPYLAVRHLVYLRFLNLSYNP-ISTIEG-------SMLHELLRLQEIQLVGG-QLAVVEPYAFRGLNYLRV 300 (477)
T ss_dssp EESS-CCCSCCHHHHTTCTTCCEEECCSSC-CCEECT-------TSCTTCTTCCEEECCSS-CCSEECTTTBTTCTTCCE
T ss_pred CcCC-cccccCHHHhcCccccCeeECCCCc-CCccCh-------hhccccccCCEEECCCC-ccceECHHHhcCcccCCE
Confidence 9999 577765 46889999999999965 776655 36788999999999999 56555 445677899999
Q ss_pred EeecCcccCcCCCCCc
Q 040192 336 MKVIHCLKLKKLPLDS 351 (386)
Q Consensus 336 L~i~~c~~L~~l~~~~ 351 (386)
|+++++ +++.++...
T Consensus 301 L~L~~N-~l~~~~~~~ 315 (477)
T 2id5_A 301 LNVSGN-QLTTLEESV 315 (477)
T ss_dssp EECCSS-CCSCCCGGG
T ss_pred EECCCC-cCceeCHhH
Confidence 999985 788877654
No 2
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.95 E-value=3.9e-26 Score=210.42 Aligned_cols=283 Identities=18% Similarity=0.216 Sum_probs=212.2
Q ss_pred cccEEEEcCCCCCCCCcccccccCccEEEecCCcccccCCCCCCCCCcEEecccCcCCCcCChhhhcCCCcCceecccCC
Q 040192 32 KEEHLVYAGAGLSETPDVRKWEKNVRRLSLMENQIENLSEVPTCPYLRTLFLNNNAPLRRIDSGFFQSMPRLNVLNLSGA 111 (386)
Q Consensus 32 ~~~~l~~~~~~l~~~p~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~ 111 (386)
....+.+.+..+..+|.+..++ +|++|++++|.+.+++....+++|++|++++| .+..++. +..+++|++|++++|
T Consensus 45 ~L~~L~l~~~~i~~~~~~~~~~-~L~~L~l~~n~i~~~~~~~~l~~L~~L~L~~n-~i~~~~~--~~~l~~L~~L~l~~n 120 (347)
T 4fmz_A 45 SITKLVVAGEKVASIQGIEYLT-NLEYLNLNGNQITDISPLSNLVKLTNLYIGTN-KITDISA--LQNLTNLRELYLNED 120 (347)
T ss_dssp TCSEEECCSSCCCCCTTGGGCT-TCCEEECCSSCCCCCGGGTTCTTCCEEECCSS-CCCCCGG--GTTCTTCSEEECTTS
T ss_pred cccEEEEeCCccccchhhhhcC-CccEEEccCCccccchhhhcCCcCCEEEccCC-cccCchH--HcCCCcCCEEECcCC
Confidence 3567888888888888888888 89999999998888777788889999999988 6776653 788899999999888
Q ss_pred ccccccchhhcCCCccCEEEcCCCCCCcccHhhhccCCCCEEEccCCccccccchhhhcCCCCCcEEEEeccCCccccCC
Q 040192 112 IRLYSFPLGISKLISLQHLDLSNTGIAELPKELNALVNLTCLNLEETWRLTVIPRRLISSFSSLHVLRIFGSGYSYSDGM 191 (386)
Q Consensus 112 ~~~~~~~~~~~~l~~L~~L~l~~~~i~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~ 191 (386)
.+..++. +..+++|+.|++++|.....+..+..+++|+.|++++| .+..++. +..+++|+.|++++|.+......
T Consensus 121 -~i~~~~~-~~~l~~L~~L~l~~n~~~~~~~~~~~l~~L~~L~l~~~-~~~~~~~--~~~l~~L~~L~l~~n~l~~~~~~ 195 (347)
T 4fmz_A 121 -NISDISP-LANLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTES-KVKDVTP--IANLTDLYSLSLNYNQIEDISPL 195 (347)
T ss_dssp -CCCCCGG-GTTCTTCCEEECTTCTTCCCCGGGTTCTTCCEEECCSS-CCCCCGG--GGGCTTCSEEECTTSCCCCCGGG
T ss_pred -cccCchh-hccCCceeEEECCCCCCcccccchhhCCCCcEEEecCC-CcCCchh--hccCCCCCEEEccCCcccccccc
Confidence 7777765 77888999999988855544455788889999999888 4555555 78888999999998888776555
Q ss_pred CcCccccccc-ceeecCCccccccccccCCcEEEeeccCCccchhcccccccccCccccccCcccEEEecCCCCCCcccc
Q 040192 192 IGNGEFEQLC-GFRRSKSLDVSALADLKRLNRLKIAECYGLAELKMDYKSVVQNTGQSFVFHSLKKFQISYCKELKDLTF 270 (386)
Q Consensus 192 ~~l~~L~~L~-~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~ 270 (386)
..++.|+.+. ..+...+. ..+..+++|++|++++|+... .+. +. .+++|+.|++++| .++.++.
T Consensus 196 ~~l~~L~~L~l~~n~l~~~--~~~~~~~~L~~L~l~~n~l~~-~~~--~~---------~l~~L~~L~l~~n-~l~~~~~ 260 (347)
T 4fmz_A 196 ASLTSLHYFTAYVNQITDI--TPVANMTRLNSLKIGNNKITD-LSP--LA---------NLSQLTWLEIGTN-QISDINA 260 (347)
T ss_dssp GGCTTCCEEECCSSCCCCC--GGGGGCTTCCEEECCSSCCCC-CGG--GT---------TCTTCCEEECCSS-CCCCCGG
T ss_pred cCCCccceeecccCCCCCC--chhhcCCcCCEEEccCCccCC-Ccc--hh---------cCCCCCEEECCCC-ccCCChh
Confidence 5566666655 22222222 226778899999999886654 222 32 7889999999998 5777777
Q ss_pred ccCCCCCcEEeecCCCccchhhccCcccccCCCCcccccceeeeccccccccccCCCcCCCCccEEeecCcccCcCCCC
Q 040192 271 LIFAPNLKSIEVDSCYALEEIVSDVPEVMMGNLNPFAQFHFLCFSYLPNLKSIYRKPLPFPHLKEMKVIHCLKLKKLPL 349 (386)
Q Consensus 271 l~~l~~L~~L~l~~c~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~i~~c~~L~~l~~ 349 (386)
+..+++|+.|++++|. ++++. .+..+++|++|++++|......+.....+++|+.|++++|+ ++.++.
T Consensus 261 ~~~l~~L~~L~l~~n~-l~~~~---------~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~-l~~~~~ 328 (347)
T 4fmz_A 261 VKDLTKLKMLNVGSNQ-ISDIS---------VLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNH-ITDIRP 328 (347)
T ss_dssp GTTCTTCCEEECCSSC-CCCCG---------GGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSS-CCCCGG
T ss_pred HhcCCCcCEEEccCCc-cCCCh---------hhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCc-cccccC
Confidence 8888999999999864 66551 45678899999999984332333345668999999999874 666543
No 3
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.94 E-value=2.9e-25 Score=204.55 Aligned_cols=277 Identities=17% Similarity=0.271 Sum_probs=229.0
Q ss_pred cccEEEEcCCCCCCCCcccccccCccEEEecCCcccccCCCCCCCCCcEEecccCcCCCcCChhhhcCCCcCceecccCC
Q 040192 32 KEEHLVYAGAGLSETPDVRKWEKNVRRLSLMENQIENLSEVPTCPYLRTLFLNNNAPLRRIDSGFFQSMPRLNVLNLSGA 111 (386)
Q Consensus 32 ~~~~l~~~~~~l~~~p~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~ 111 (386)
....+.+.+..+.+++.+..++ +|++|++++|.+..++....+++|++|++++| .+..++. +..+++|++|++++|
T Consensus 67 ~L~~L~l~~n~i~~~~~~~~l~-~L~~L~L~~n~i~~~~~~~~l~~L~~L~l~~n-~i~~~~~--~~~l~~L~~L~l~~n 142 (347)
T 4fmz_A 67 NLEYLNLNGNQITDISPLSNLV-KLTNLYIGTNKITDISALQNLTNLRELYLNED-NISDISP--LANLTKMYSLNLGAN 142 (347)
T ss_dssp TCCEEECCSSCCCCCGGGTTCT-TCCEEECCSSCCCCCGGGTTCTTCSEEECTTS-CCCCCGG--GTTCTTCCEEECTTC
T ss_pred CccEEEccCCccccchhhhcCC-cCCEEEccCCcccCchHHcCCCcCCEEECcCC-cccCchh--hccCCceeEEECCCC
Confidence 4788999999999998888888 99999999999999887899999999999999 7777766 789999999999999
Q ss_pred ccccccchhhcCCCccCEEEcCCCCCCcccHhhhccCCCCEEEccCCccccccchhhhcCCCCCcEEEEeccCCccccCC
Q 040192 112 IRLYSFPLGISKLISLQHLDLSNTGIAELPKELNALVNLTCLNLEETWRLTVIPRRLISSFSSLHVLRIFGSGYSYSDGM 191 (386)
Q Consensus 112 ~~~~~~~~~~~~l~~L~~L~l~~~~i~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~ 191 (386)
.....+ ..+..+++|++|++++|.+..++. +..+++|+.|++++| .+..++. +..+++|+.|++++|.+......
T Consensus 143 ~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~-~~~l~~L~~L~l~~n-~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~~ 217 (347)
T 4fmz_A 143 HNLSDL-SPLSNMTGLNYLTVTESKVKDVTP-IANLTDLYSLSLNYN-QIEDISP--LASLTSLHYFTAYVNQITDITPV 217 (347)
T ss_dssp TTCCCC-GGGTTCTTCCEEECCSSCCCCCGG-GGGCTTCSEEECTTS-CCCCCGG--GGGCTTCCEEECCSSCCCCCGGG
T ss_pred CCcccc-cchhhCCCCcEEEecCCCcCCchh-hccCCCCCEEEccCC-ccccccc--ccCCCccceeecccCCCCCCchh
Confidence 444444 458899999999999999988765 789999999999999 5666766 88999999999999998887556
Q ss_pred CcCccccccc-ceeecCCccccccccccCCcEEEeeccCCccchhcccccccccCccccccCcccEEEecCCCCCCcccc
Q 040192 192 IGNGEFEQLC-GFRRSKSLDVSALADLKRLNRLKIAECYGLAELKMDYKSVVQNTGQSFVFHSLKKFQISYCKELKDLTF 270 (386)
Q Consensus 192 ~~l~~L~~L~-~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~ 270 (386)
..++.|+.|. ..+...+.. .+..+++|++|++++|.... . ..+. .+++|+.|++++| .++.++.
T Consensus 218 ~~~~~L~~L~l~~n~l~~~~--~~~~l~~L~~L~l~~n~l~~-~--~~~~---------~l~~L~~L~l~~n-~l~~~~~ 282 (347)
T 4fmz_A 218 ANMTRLNSLKIGNNKITDLS--PLANLSQLTWLEIGTNQISD-I--NAVK---------DLTKLKMLNVGSN-QISDISV 282 (347)
T ss_dssp GGCTTCCEEECCSSCCCCCG--GGTTCTTCCEEECCSSCCCC-C--GGGT---------TCTTCCEEECCSS-CCCCCGG
T ss_pred hcCCcCCEEEccCCccCCCc--chhcCCCCCEEECCCCccCC-C--hhHh---------cCCCcCEEEccCC-ccCCChh
Confidence 6777777776 333333322 27789999999999996654 2 3333 7899999999999 6888888
Q ss_pred ccCCCCCcEEeecCCCccchhhccCcccccCCCCcccccceeeeccccccccccCCCcCCCCccEEeecCcc
Q 040192 271 LIFAPNLKSIEVDSCYALEEIVSDVPEVMMGNLNPFAQFHFLCFSYLPNLKSIYRKPLPFPHLKEMKVIHCL 342 (386)
Q Consensus 271 l~~l~~L~~L~l~~c~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~i~~c~ 342 (386)
+..+++|+.|++++|. ++..... .+..+++|++|++++| .+..++. ...+++|+.|++++|+
T Consensus 283 ~~~l~~L~~L~L~~n~-l~~~~~~-------~l~~l~~L~~L~L~~n-~l~~~~~-~~~l~~L~~L~l~~N~ 344 (347)
T 4fmz_A 283 LNNLSQLNSLFLNNNQ-LGNEDME-------VIGGLTNLTTLFLSQN-HITDIRP-LASLSKMDSADFANQV 344 (347)
T ss_dssp GGGCTTCSEEECCSSC-CCGGGHH-------HHHTCTTCSEEECCSS-SCCCCGG-GGGCTTCSEESSSCC-
T ss_pred hcCCCCCCEEECcCCc-CCCcChh-------HhhccccCCEEEccCC-ccccccC-hhhhhccceeehhhhc
Confidence 8999999999999976 6555442 5678899999999999 4666654 6779999999999864
No 4
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.94 E-value=1.5e-25 Score=209.94 Aligned_cols=294 Identities=20% Similarity=0.247 Sum_probs=158.1
Q ss_pred cEEEEcCCCCCCCCc--ccccccCccEEEecCCcccccCCC--CCCCCCcEEecccCcCCCcCChhhhcCCCcCceeccc
Q 040192 34 EHLVYAGAGLSETPD--VRKWEKNVRRLSLMENQIENLSEV--PTCPYLRTLFLNNNAPLRRIDSGFFQSMPRLNVLNLS 109 (386)
Q Consensus 34 ~~l~~~~~~l~~~p~--~~~~~~~L~~L~l~~~~~~~~~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~ 109 (386)
+.+.+.+..+..+|. +..++ +|++|++++|.+..++.. ..+++|++|++++| .+..+++..++.+++|++|+++
T Consensus 48 ~~l~l~~~~l~~l~~~~~~~l~-~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~ 125 (390)
T 3o6n_A 48 KIVTFKNSTMRKLPAALLDSFR-QVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFN-AIRYLPPHVFQNVPLLTVLVLE 125 (390)
T ss_dssp SEEEEESCEESEECTHHHHHCC-CCSEEECTTSCCCEECTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECC
T ss_pred eEEEecCCchhhCChhHhcccc-cCcEEECCCCcccccChhhccCCCCcCEEECCCC-CCCcCCHHHhcCCCCCCEEECC
Confidence 344444444444443 33444 455555555544443321 44455555555544 3444443334445555555555
Q ss_pred CCccccccchh-hcCCCccCEEEcCCCCCCccc-HhhhccCCCCEEEccCCccccccchhhhcCCCCCcEEEEeccCCcc
Q 040192 110 GAIRLYSFPLG-ISKLISLQHLDLSNTGIAELP-KELNALVNLTCLNLEETWRLTVIPRRLISSFSSLHVLRIFGSGYSY 187 (386)
Q Consensus 110 ~~~~~~~~~~~-~~~l~~L~~L~l~~~~i~~l~-~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~ 187 (386)
+| .+..+|.. +..+++|++|++++|.++.++ ..+..+++|+.|++++| .+..++ +..+++|+.|++++|.+..
T Consensus 126 ~n-~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~---~~~l~~L~~L~l~~n~l~~ 200 (390)
T 3o6n_A 126 RN-DLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSN-RLTHVD---LSLIPSLFHANVSYNLLST 200 (390)
T ss_dssp SS-CCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSS-CCSBCC---GGGCTTCSEEECCSSCCSE
T ss_pred CC-ccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCC-cCCccc---cccccccceeecccccccc
Confidence 44 44444332 244455555555555444332 22444445555555544 222222 3344445555554444433
Q ss_pred ccCCCcCccccccc-ceeecCCccccccccccCCcEEEeeccCCccchhcccccccccCccccccCcccEEEecCCCCCC
Q 040192 188 SDGMIGNGEFEQLC-GFRRSKSLDVSALADLKRLNRLKIAECYGLAELKMDYKSVVQNTGQSFVFHSLKKFQISYCKELK 266 (386)
Q Consensus 188 ~~~~~~l~~L~~L~-~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~ 266 (386)
... ...|+.+. ..+.+.. .....+++|+.|++++|.... . .++. .+++|+.|++++| .++
T Consensus 201 ~~~---~~~L~~L~l~~n~l~~---~~~~~~~~L~~L~l~~n~l~~-~--~~l~---------~l~~L~~L~Ls~n-~l~ 261 (390)
T 3o6n_A 201 LAI---PIAVEELDASHNSINV---VRGPVNVELTILKLQHNNLTD-T--AWLL---------NYPGLVEVDLSYN-ELE 261 (390)
T ss_dssp EEC---CSSCSEEECCSSCCCE---EECCCCSSCCEEECCSSCCCC-C--GGGG---------GCTTCSEEECCSS-CCC
T ss_pred cCC---CCcceEEECCCCeeee---ccccccccccEEECCCCCCcc-c--HHHc---------CCCCccEEECCCC-cCC
Confidence 211 11222222 1111111 011224678888888876554 2 3333 6889999999988 455
Q ss_pred cc--ccccCCCCCcEEeecCCCccchhhccCcccccCCCCcccccceeeeccccccccccCCCcCCCCccEEeecCcccC
Q 040192 267 DL--TFLIFAPNLKSIEVDSCYALEEIVSDVPEVMMGNLNPFAQFHFLCFSYLPNLKSIYRKPLPFPHLKEMKVIHCLKL 344 (386)
Q Consensus 267 ~~--~~l~~l~~L~~L~l~~c~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~i~~c~~L 344 (386)
.. ..+..+++|+.|++++|. ++.++. ....+++|++|++++| .+..++.....+++|+.|+++++ .+
T Consensus 262 ~~~~~~~~~l~~L~~L~L~~n~-l~~~~~--------~~~~l~~L~~L~L~~n-~l~~~~~~~~~l~~L~~L~L~~N-~i 330 (390)
T 3o6n_A 262 KIMYHPFVKMQRLERLYISNNR-LVALNL--------YGQPIPTLKVLDLSHN-HLLHVERNQPQFDRLENLYLDHN-SI 330 (390)
T ss_dssp EEESGGGTTCSSCCEEECCSSC-CCEEEC--------SSSCCTTCCEEECCSS-CCCCCGGGHHHHTTCSEEECCSS-CC
T ss_pred CcChhHccccccCCEEECCCCc-CcccCc--------ccCCCCCCCEEECCCC-cceecCccccccCcCCEEECCCC-cc
Confidence 43 346788899999999854 666543 4467889999999999 67777766677899999999985 57
Q ss_pred cCCCCCcccccCcceEEEch
Q 040192 345 KKLPLDSNRAKERKIVIRGS 364 (386)
Q Consensus 345 ~~l~~~~~~~~~~l~i~~~~ 364 (386)
+.++.......+.+.+.+.+
T Consensus 331 ~~~~~~~~~~L~~L~l~~N~ 350 (390)
T 3o6n_A 331 VTLKLSTHHTLKNLTLSHND 350 (390)
T ss_dssp CCCCCCTTCCCSEEECCSSC
T ss_pred ceeCchhhccCCEEEcCCCC
Confidence 88775443333555554444
No 5
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.94 E-value=3e-25 Score=212.03 Aligned_cols=305 Identities=17% Similarity=0.209 Sum_probs=211.7
Q ss_pred ccEEEEcCCCCCCCCcccccccCccEEEecCCccccc-CCC-CCCCCCcEEecccCcCCCcCChhhhcCCCcCceecccC
Q 040192 33 EEHLVYAGAGLSETPDVRKWEKNVRRLSLMENQIENL-SEV-PTCPYLRTLFLNNNAPLRRIDSGFFQSMPRLNVLNLSG 110 (386)
Q Consensus 33 ~~~l~~~~~~l~~~p~~~~~~~~L~~L~l~~~~~~~~-~~~-~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~ 110 (386)
...+.+.+.++..+|. +++++++|++++|.+.++ +.. ..+++|++|++++|.....+++..+..+++|++|++++
T Consensus 12 ~~~~~c~~~~l~~lp~---l~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~ 88 (455)
T 3v47_A 12 GYNAICINRGLHQVPE---LPAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDY 88 (455)
T ss_dssp TTEEECCSSCCSSCCC---CCTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTT
T ss_pred ccccCcCCCCcccCCC---CCCccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCC
Confidence 5568888889998887 333899999999999885 333 88999999999998443467666688999999999999
Q ss_pred Ccccccc-chhhcCCCccCEEEcCCCCCCc-ccHh--hhccCCCCEEEccCCccccccchhhhcCCCCCcEEEEeccCCc
Q 040192 111 AIRLYSF-PLGISKLISLQHLDLSNTGIAE-LPKE--LNALVNLTCLNLEETWRLTVIPRRLISSFSSLHVLRIFGSGYS 186 (386)
Q Consensus 111 ~~~~~~~-~~~~~~l~~L~~L~l~~~~i~~-l~~~--~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 186 (386)
| .+..+ |..++.+++|++|++++|.++. .+.. +..+++|++|++++|......|...+..+++|++|++++|.+.
T Consensus 89 n-~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~ 167 (455)
T 3v47_A 89 N-QFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVK 167 (455)
T ss_dssp C-TTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBS
T ss_pred C-ccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCccc
Confidence 9 77755 7788999999999999999874 3443 7889999999999995544446555789999999999998877
Q ss_pred ccc--CCCcC----------------------------------ccccccc-ceeecCCcccc-----------------
Q 040192 187 YSD--GMIGN----------------------------------GEFEQLC-GFRRSKSLDVS----------------- 212 (386)
Q Consensus 187 ~~~--~~~~l----------------------------------~~L~~L~-~~~~~~~~~~~----------------- 212 (386)
... .+..+ +.|+.|. ..+...+..+.
T Consensus 168 ~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~ 247 (455)
T 3v47_A 168 SICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILS 247 (455)
T ss_dssp CCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECT
T ss_pred ccChhhhhccccccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeec
Confidence 651 11111 2222222 11110000000
Q ss_pred --------------------ccc--cccCCcEEEeeccCCccchhcccccccccCccccccCcccEEEecCCCCCCccc-
Q 040192 213 --------------------ALA--DLKRLNRLKIAECYGLAELKMDYKSVVQNTGQSFVFHSLKKFQISYCKELKDLT- 269 (386)
Q Consensus 213 --------------------~l~--~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~- 269 (386)
.+. ..++|+.|++++|+... .....+. .+++|+.|++++| .++..+
T Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~-~~~~~~~---------~l~~L~~L~Ls~n-~l~~~~~ 316 (455)
T 3v47_A 248 NSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFA-LLKSVFS---------HFTDLEQLTLAQN-EINKIDD 316 (455)
T ss_dssp TCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCE-ECTTTTT---------TCTTCCEEECTTS-CCCEECT
T ss_pred cccccccccchhhhccCcccccccccccCceEEEecCccccc-cchhhcc---------cCCCCCEEECCCC-cccccCh
Confidence 000 11356666666654443 2223333 6788999999888 455542
Q ss_pred -cccCCCCCcEEeecCCCccchhhccCcccccCCCCcccccceeeeccccccccc-cCCCcCCCCccEEeecCcccCcCC
Q 040192 270 -FLIFAPNLKSIEVDSCYALEEIVSDVPEVMMGNLNPFAQFHFLCFSYLPNLKSI-YRKPLPFPHLKEMKVIHCLKLKKL 347 (386)
Q Consensus 270 -~l~~l~~L~~L~l~~c~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~-~~~~~~~~~L~~L~i~~c~~L~~l 347 (386)
.+..+++|++|++++|. ++.+.. ..+..+++|++|+++++ .+..+ +.....+++|+.|++++ .+++.+
T Consensus 317 ~~~~~l~~L~~L~Ls~N~-l~~~~~-------~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~L~~-N~l~~~ 386 (455)
T 3v47_A 317 NAFWGLTHLLKLNLSQNF-LGSIDS-------RMFENLDKLEVLDLSYN-HIRALGDQSFLGLPNLKELALDT-NQLKSV 386 (455)
T ss_dssp TTTTTCTTCCEEECCSSC-CCEECG-------GGGTTCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCS-SCCSCC
T ss_pred hHhcCcccCCEEECCCCc-cCCcCh-------hHhcCcccCCEEECCCC-cccccChhhccccccccEEECCC-CccccC
Confidence 46788899999999865 666544 26678899999999999 56655 55677799999999998 478888
Q ss_pred CCCcccccCcceEEE
Q 040192 348 PLDSNRAKERKIVIR 362 (386)
Q Consensus 348 ~~~~~~~~~~l~i~~ 362 (386)
|.........++.++
T Consensus 387 ~~~~~~~l~~L~~L~ 401 (455)
T 3v47_A 387 PDGIFDRLTSLQKIW 401 (455)
T ss_dssp CTTTTTTCTTCCEEE
T ss_pred CHhHhccCCcccEEE
Confidence 876533333444443
No 6
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.93 E-value=1.9e-24 Score=202.41 Aligned_cols=279 Identities=17% Similarity=0.167 Sum_probs=224.1
Q ss_pred ccccCccEEEecCCcccccCCC--CCCCCCcEEecccCcCCCcCChhhhcCCCcCceecccCCcccccc-chhhcCCCcc
Q 040192 51 KWEKNVRRLSLMENQIENLSEV--PTCPYLRTLFLNNNAPLRRIDSGFFQSMPRLNVLNLSGAIRLYSF-PLGISKLISL 127 (386)
Q Consensus 51 ~~~~~L~~L~l~~~~~~~~~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~-~~~~~~l~~L 127 (386)
.+. +++.++++++.+..+|.. ..+++|++|++++| .+..+++..+..+++|++|++++| .+..+ |..++.+++|
T Consensus 43 ~l~-~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n-~i~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L 119 (390)
T 3o6n_A 43 TLN-NQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDL-QIEEIDTYAFAYAHTIQKLYMGFN-AIRYLPPHVFQNVPLL 119 (390)
T ss_dssp GGC-CCSEEEEESCEESEECTHHHHHCCCCSEEECTTS-CCCEECTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTC
T ss_pred ccC-CceEEEecCCchhhCChhHhcccccCcEEECCCC-cccccChhhccCCCCcCEEECCCC-CCCcCCHHHhcCCCCC
Confidence 456 899999999999998875 78999999999999 788887766899999999999999 78877 4568999999
Q ss_pred CEEEcCCCCCCcccHh-hhccCCCCEEEccCCccccccchhhhcCCCCCcEEEEeccCCccccCCCcCcccccccceeec
Q 040192 128 QHLDLSNTGIAELPKE-LNALVNLTCLNLEETWRLTVIPRRLISSFSSLHVLRIFGSGYSYSDGMIGNGEFEQLCGFRRS 206 (386)
Q Consensus 128 ~~L~l~~~~i~~l~~~-~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~L~~~~~~ 206 (386)
++|++++|.++.+|.. +..+++|++|++++| .+..++...+..+++|+.|++++|.+... ....++.|+.+. .
T Consensus 120 ~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~l~~L~~L~----l 193 (390)
T 3o6n_A 120 TVLVLERNDLSSLPRGIFHNTPKLTTLSMSNN-NLERIEDDTFQATTSLQNLQLSSNRLTHV-DLSLIPSLFHAN----V 193 (390)
T ss_dssp CEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCBCCTTTTSSCTTCCEEECCSSCCSBC-CGGGCTTCSEEE----C
T ss_pred CEEECCCCccCcCCHHHhcCCCCCcEEECCCC-ccCccChhhccCCCCCCEEECCCCcCCcc-ccccccccceee----c
Confidence 9999999999999876 488999999999999 45566655589999999999999998876 345556666554 1
Q ss_pred CCccccccccccCCcEEEeeccCCccchhcccccccccCccccccCcccEEEecCCCCCCccccccCCCCCcEEeecCCC
Q 040192 207 KSLDVSALADLKRLNRLKIAECYGLAELKMDYKSVVQNTGQSFVFHSLKKFQISYCKELKDLTFLIFAPNLKSIEVDSCY 286 (386)
Q Consensus 207 ~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~l~~l~~L~~L~l~~c~ 286 (386)
.+.....+...++|+.|++++|.... . ... .+++|+.|++++| .++..+++..+++|+.|++++|.
T Consensus 194 ~~n~l~~~~~~~~L~~L~l~~n~l~~-~-~~~-----------~~~~L~~L~l~~n-~l~~~~~l~~l~~L~~L~Ls~n~ 259 (390)
T 3o6n_A 194 SYNLLSTLAIPIAVEELDASHNSINV-V-RGP-----------VNVELTILKLQHN-NLTDTAWLLNYPGLVEVDLSYNE 259 (390)
T ss_dssp CSSCCSEEECCSSCSEEECCSSCCCE-E-ECC-----------CCSSCCEEECCSS-CCCCCGGGGGCTTCSEEECCSSC
T ss_pred ccccccccCCCCcceEEECCCCeeee-c-ccc-----------ccccccEEECCCC-CCcccHHHcCCCCccEEECCCCc
Confidence 22223445556789999999987654 2 111 5689999999999 67888889999999999999965
Q ss_pred ccchhhccCcccccCCCCcccccceeeeccccccccccCCCcCCCCccEEeecCcccCcCCCCCcccccCcceEEEc
Q 040192 287 ALEEIVSDVPEVMMGNLNPFAQFHFLCFSYLPNLKSIYRKPLPFPHLKEMKVIHCLKLKKLPLDSNRAKERKIVIRG 363 (386)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~i~~c~~L~~l~~~~~~~~~~l~i~~~ 363 (386)
++.... ..+..+++|++|+++++ .+..++.....+++|+.|++++| +++.+|...... ..++.++.
T Consensus 260 -l~~~~~-------~~~~~l~~L~~L~L~~n-~l~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~l-~~L~~L~L 325 (390)
T 3o6n_A 260 -LEKIMY-------HPFVKMQRLERLYISNN-RLVALNLYGQPIPTLKVLDLSHN-HLLHVERNQPQF-DRLENLYL 325 (390)
T ss_dssp -CCEEES-------GGGTTCSSCCEEECCSS-CCCEEECSSSCCTTCCEEECCSS-CCCCCGGGHHHH-TTCSEEEC
T ss_pred -CCCcCh-------hHccccccCCEEECCCC-cCcccCcccCCCCCCCEEECCCC-cceecCcccccc-CcCCEEEC
Confidence 666544 26778999999999999 78888877778999999999996 788877654433 33444433
No 7
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.93 E-value=2.2e-24 Score=207.30 Aligned_cols=287 Identities=18% Similarity=0.185 Sum_probs=227.2
Q ss_pred cccEEEEcCCCCCCCC--cccccccCccEEEecCCcccccCC-C-CCCCCCcEEecccCcCCCcCChhhhcCCCcCceec
Q 040192 32 KEEHLVYAGAGLSETP--DVRKWEKNVRRLSLMENQIENLSE-V-PTCPYLRTLFLNNNAPLRRIDSGFFQSMPRLNVLN 107 (386)
Q Consensus 32 ~~~~l~~~~~~l~~~p--~~~~~~~~L~~L~l~~~~~~~~~~-~-~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~ 107 (386)
....+++.+..+.+++ .+..++ +|++|++++|.+..+.. . ..+++|++|++++| .+..++...+..+++|++|+
T Consensus 33 ~l~~L~L~~n~l~~~~~~~~~~l~-~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~ 110 (477)
T 2id5_A 33 ETRLLDLGKNRIKTLNQDEFASFP-HLEELELNENIVSAVEPGAFNNLFNLRTLGLRSN-RLKLIPLGVFTGLSNLTKLD 110 (477)
T ss_dssp TCSEEECCSSCCCEECTTTTTTCT-TCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS-CCCSCCTTSSTTCTTCCEEE
T ss_pred CCcEEECCCCccceECHhHccCCC-CCCEEECCCCccCEeChhhhhCCccCCEEECCCC-cCCccCcccccCCCCCCEEE
Confidence 4678999999998874 478888 99999999999998633 3 89999999999999 88888887789999999999
Q ss_pred ccCCcccccc-chhhcCCCccCEEEcCCCCCCccc-HhhhccCCCCEEEccCCccccccchhhhcCCCCCcEEEEeccCC
Q 040192 108 LSGAIRLYSF-PLGISKLISLQHLDLSNTGIAELP-KELNALVNLTCLNLEETWRLTVIPRRLISSFSSLHVLRIFGSGY 185 (386)
Q Consensus 108 l~~~~~~~~~-~~~~~~l~~L~~L~l~~~~i~~l~-~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~ 185 (386)
+++| .+..+ +..+..+++|+.|++++|.+..++ ..+..+++|+.|++++| .+..++...+..+++|+.|++++|.+
T Consensus 111 Ls~n-~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~l~~l~~L~~L~l~~n~i 188 (477)
T 2id5_A 111 ISEN-KIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKC-NLTSIPTEALSHLHGLIVLRLRHLNI 188 (477)
T ss_dssp CTTS-CCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESC-CCSSCCHHHHTTCTTCCEEEEESCCC
T ss_pred CCCC-ccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCC-cCcccChhHhcccCCCcEEeCCCCcC
Confidence 9999 77755 667899999999999999998664 57889999999999999 66777776689999999999999988
Q ss_pred ccc--cCCCcCccccccc-ceeecCCccccccccccCCcEEEeeccCCccchhcccccccccCccccccCcccEEEecCC
Q 040192 186 SYS--DGMIGNGEFEQLC-GFRRSKSLDVSALADLKRLNRLKIAECYGLAELKMDYKSVVQNTGQSFVFHSLKKFQISYC 262 (386)
Q Consensus 186 ~~~--~~~~~l~~L~~L~-~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 262 (386)
... ..+..++.|+.|. ..+...+..+.......+|+.|++++|+... ++...+. .+++|+.|++++|
T Consensus 189 ~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~-~~~~~~~---------~l~~L~~L~Ls~n 258 (477)
T 2id5_A 189 NAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTA-VPYLAVR---------HLVYLRFLNLSYN 258 (477)
T ss_dssp CEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCS-CCHHHHT---------TCTTCCEEECCSS
T ss_pred cEeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccc-cCHHHhc---------CccccCeeECCCC
Confidence 775 2355666676665 2222222223333344589999999996653 4444444 7899999999999
Q ss_pred CCCCccc--cccCCCCCcEEeecCCCccchhhccCcccccCCCCcccccceeeeccccccccccCC-CcCCCCccEEeec
Q 040192 263 KELKDLT--FLIFAPNLKSIEVDSCYALEEIVSDVPEVMMGNLNPFAQFHFLCFSYLPNLKSIYRK-PLPFPHLKEMKVI 339 (386)
Q Consensus 263 ~~l~~~~--~l~~l~~L~~L~l~~c~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~-~~~~~~L~~L~i~ 339 (386)
. ++.++ .+..+++|+.|+|++|. +..+.. ..+..+++|++|+|+++ .+..++.. ...+++|+.|+++
T Consensus 259 ~-l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~-------~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~ 328 (477)
T 2id5_A 259 P-ISTIEGSMLHELLRLQEIQLVGGQ-LAVVEP-------YAFRGLNYLRVLNVSGN-QLTTLEESVFHSVGNLETLILD 328 (477)
T ss_dssp C-CCEECTTSCTTCTTCCEEECCSSC-CSEECT-------TTBTTCTTCCEEECCSS-CCSCCCGGGBSCGGGCCEEECC
T ss_pred c-CCccChhhccccccCCEEECCCCc-cceECH-------HHhcCcccCCEEECCCC-cCceeCHhHcCCCcccCEEEcc
Confidence 4 66553 36788999999999955 766655 37788999999999999 67776643 4568999999998
Q ss_pred Ccc
Q 040192 340 HCL 342 (386)
Q Consensus 340 ~c~ 342 (386)
+++
T Consensus 329 ~N~ 331 (477)
T 2id5_A 329 SNP 331 (477)
T ss_dssp SSC
T ss_pred CCC
Confidence 643
No 8
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.93 E-value=2e-24 Score=213.08 Aligned_cols=294 Identities=20% Similarity=0.251 Sum_probs=172.3
Q ss_pred cEEEEcCCCCCCCCc--ccccccCccEEEecCCcccccCC--CCCCCCCcEEecccCcCCCcCChhhhcCCCcCceeccc
Q 040192 34 EHLVYAGAGLSETPD--VRKWEKNVRRLSLMENQIENLSE--VPTCPYLRTLFLNNNAPLRRIDSGFFQSMPRLNVLNLS 109 (386)
Q Consensus 34 ~~l~~~~~~l~~~p~--~~~~~~~L~~L~l~~~~~~~~~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~ 109 (386)
..+.+.+..+..+|. +..++ +|+.|++++|.+.+++. ...+++|++|++++| .+..+++..++.+++|++|+++
T Consensus 54 ~~l~l~~~~l~~lp~~~~~~l~-~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~ 131 (597)
T 3oja_B 54 KIVTFKNSTMRKLPAALLDSFR-QVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFN-AIRYLPPHVFQNVPLLTVLVLE 131 (597)
T ss_dssp SEEEESSCEESEECTHHHHHCC-CCSEEECTTSCCCEECTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECC
T ss_pred eEEEeeCCCCCCcCHHHHccCC-CCcEEECCCCCCCCCChHHhcCCCCCCEEECCCC-cCCCCCHHHHcCCCCCCEEEee
Confidence 444455555555543 34445 55666666655555432 255556666666555 4555554445555666666665
Q ss_pred CCccccccchh-hcCCCccCEEEcCCCCCCcccH-hhhccCCCCEEEccCCccccccchhhhcCCCCCcEEEEeccCCcc
Q 040192 110 GAIRLYSFPLG-ISKLISLQHLDLSNTGIAELPK-ELNALVNLTCLNLEETWRLTVIPRRLISSFSSLHVLRIFGSGYSY 187 (386)
Q Consensus 110 ~~~~~~~~~~~-~~~l~~L~~L~l~~~~i~~l~~-~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~ 187 (386)
+| .+..+|.. ++.+++|++|++++|.++.++. .++.+++|+.|++++| .+..++ ++.+++|+.|++++|.+..
T Consensus 132 ~n-~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~---~~~l~~L~~L~l~~n~l~~ 206 (597)
T 3oja_B 132 RN-DLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSN-RLTHVD---LSLIPSLFHANVSYNLLST 206 (597)
T ss_dssp SS-CCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTS-CCSBCC---GGGCTTCSEEECCSSCCSE
T ss_pred CC-CCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCC-CCCCcC---hhhhhhhhhhhcccCcccc
Confidence 55 55555433 3555566666666655554432 3555555666666555 233332 3445555555555554444
Q ss_pred ccCCCcCccccccc-ceeecCCccccccccccCCcEEEeeccCCccchhcccccccccCccccccCcccEEEecCCCCCC
Q 040192 188 SDGMIGNGEFEQLC-GFRRSKSLDVSALADLKRLNRLKIAECYGLAELKMDYKSVVQNTGQSFVFHSLKKFQISYCKELK 266 (386)
Q Consensus 188 ~~~~~~l~~L~~L~-~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~ 266 (386)
.. ....|+.|. ..+.+... + ....++|+.|++++|.... ..++. .+++|+.|++++| .++
T Consensus 207 l~---~~~~L~~L~ls~n~l~~~-~--~~~~~~L~~L~L~~n~l~~---~~~l~---------~l~~L~~L~Ls~N-~l~ 267 (597)
T 3oja_B 207 LA---IPIAVEELDASHNSINVV-R--GPVNVELTILKLQHNNLTD---TAWLL---------NYPGLVEVDLSYN-ELE 267 (597)
T ss_dssp EE---CCTTCSEEECCSSCCCEE-E--CSCCSCCCEEECCSSCCCC---CGGGG---------GCTTCSEEECCSS-CCC
T ss_pred cc---CCchhheeeccCCccccc-c--cccCCCCCEEECCCCCCCC---Chhhc---------cCCCCCEEECCCC-ccC
Confidence 31 122233332 11111110 0 1113578888888886554 23333 7899999999998 455
Q ss_pred cc--ccccCCCCCcEEeecCCCccchhhccCcccccCCCCcccccceeeeccccccccccCCCcCCCCccEEeecCcccC
Q 040192 267 DL--TFLIFAPNLKSIEVDSCYALEEIVSDVPEVMMGNLNPFAQFHFLCFSYLPNLKSIYRKPLPFPHLKEMKVIHCLKL 344 (386)
Q Consensus 267 ~~--~~l~~l~~L~~L~l~~c~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~i~~c~~L 344 (386)
.. ..++.+++|+.|+|++|. +..++. ....+|+|++|+|++| .+..++.....+++|+.|++++| .+
T Consensus 268 ~~~~~~~~~l~~L~~L~Ls~N~-l~~l~~--------~~~~l~~L~~L~Ls~N-~l~~i~~~~~~l~~L~~L~L~~N-~l 336 (597)
T 3oja_B 268 KIMYHPFVKMQRLERLYISNNR-LVALNL--------YGQPIPTLKVLDLSHN-HLLHVERNQPQFDRLENLYLDHN-SI 336 (597)
T ss_dssp EEESGGGTTCSSCCEEECTTSC-CCEEEC--------SSSCCTTCCEEECCSS-CCCCCGGGHHHHTTCSEEECCSS-CC
T ss_pred CCCHHHhcCccCCCEEECCCCC-CCCCCc--------ccccCCCCcEEECCCC-CCCccCcccccCCCCCEEECCCC-CC
Confidence 53 357888999999999854 666543 5567899999999999 67777777777999999999995 57
Q ss_pred cCCCCCcccccCcceEEEch
Q 040192 345 KKLPLDSNRAKERKIVIRGS 364 (386)
Q Consensus 345 ~~l~~~~~~~~~~l~i~~~~ 364 (386)
..++.......+.+.+.+.|
T Consensus 337 ~~~~~~~~~~L~~L~l~~N~ 356 (597)
T 3oja_B 337 VTLKLSTHHTLKNLTLSHND 356 (597)
T ss_dssp CCCCCCTTCCCSEEECCSSC
T ss_pred CCcChhhcCCCCEEEeeCCC
Confidence 77775544333555554444
No 9
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.92 E-value=8.1e-24 Score=202.72 Aligned_cols=280 Identities=16% Similarity=0.230 Sum_probs=154.2
Q ss_pred cccEEEEcCCCCCCCCcccccccCccEEEecCCcccccCCCCCCCCCcEEecccCcCCCcCChhhhcCCCcCceecccCC
Q 040192 32 KEEHLVYAGAGLSETPDVRKWEKNVRRLSLMENQIENLSEVPTCPYLRTLFLNNNAPLRRIDSGFFQSMPRLNVLNLSGA 111 (386)
Q Consensus 32 ~~~~l~~~~~~l~~~p~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~ 111 (386)
+...+.+.+.++..+|.+..++ +|++|++++|.+.+++....+++|++|++++| .+..+++ ++.+++|++|++++|
T Consensus 47 ~l~~L~l~~~~i~~l~~~~~l~-~L~~L~Ls~n~l~~~~~~~~l~~L~~L~l~~n-~l~~~~~--~~~l~~L~~L~L~~n 122 (466)
T 1o6v_A 47 QVTTLQADRLGIKSIDGVEYLN-NLTQINFSNNQLTDITPLKNLTKLVDILMNNN-QIADITP--LANLTNLTGLTLFNN 122 (466)
T ss_dssp TCCEEECCSSCCCCCTTGGGCT-TCCEEECCSSCCCCCGGGTTCTTCCEEECCSS-CCCCCGG--GTTCTTCCEEECCSS
T ss_pred cccEEecCCCCCccCcchhhhc-CCCEEECCCCccCCchhhhccccCCEEECCCC-ccccChh--hcCCCCCCEEECCCC
Confidence 3566777777787888777777 88888888888888766777888888888887 6666655 677888888888877
Q ss_pred ccccccchhhcCCCccCEEEcCCCCCCcccH--------------------hhhccCCCCEEEccCCccccccchhhhcC
Q 040192 112 IRLYSFPLGISKLISLQHLDLSNTGIAELPK--------------------ELNALVNLTCLNLEETWRLTVIPRRLISS 171 (386)
Q Consensus 112 ~~~~~~~~~~~~l~~L~~L~l~~~~i~~l~~--------------------~~~~l~~L~~L~l~~~~~~~~~~~~~l~~ 171 (386)
.+..++. +..+++|++|++++|.+..++. .+..+++|+.|++++| .+..++. +..
T Consensus 123 -~l~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~--l~~ 197 (466)
T 1o6v_A 123 -QITDIDP-LKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSN-KVSDISV--LAK 197 (466)
T ss_dssp -CCCCCGG-GTTCTTCSEEEEEEEEECCCGGGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSS-CCCCCGG--GGG
T ss_pred -CCCCChH-HcCCCCCCEEECCCCccCCChhhccCCcccEeecCCcccCchhhccCCCCCEEECcCC-cCCCChh--hcc
Confidence 6666654 6677777777777776665432 1333444555555554 2333332 444
Q ss_pred CCCCcEEEEeccCCccccCCCcCccccccc-ceeecCCccccccccccCCcEEEeeccCCccchhcccccc---------
Q 040192 172 FSSLHVLRIFGSGYSYSDGMIGNGEFEQLC-GFRRSKSLDVSALADLKRLNRLKIAECYGLAELKMDYKSV--------- 241 (386)
Q Consensus 172 l~~L~~L~l~~~~~~~~~~~~~l~~L~~L~-~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~--------- 241 (386)
+++|+.|++++|.+.+......+++|+.|. ..+...+ ...+..+++|+.|++++|..... .. +..
T Consensus 198 l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~--~~~l~~l~~L~~L~l~~n~l~~~-~~--~~~l~~L~~L~l 272 (466)
T 1o6v_A 198 LTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKD--IGTLASLTNLTDLDLANNQISNL-AP--LSGLTKLTELKL 272 (466)
T ss_dssp CTTCSEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCCC-GG--GTTCTTCSEEEC
T ss_pred CCCCCEEEecCCcccccccccccCCCCEEECCCCCccc--chhhhcCCCCCEEECCCCccccc-hh--hhcCCCCCEEEC
Confidence 555555555555444432233333333333 1111111 12333444555555554433221 11 110
Q ss_pred -------cccCccccccCcccEEEecCCCCCCccccccCCCCCcEEeecCCCccchhhccCcccccCCCCcccccceeee
Q 040192 242 -------VQNTGQSFVFHSLKKFQISYCKELKDLTFLIFAPNLKSIEVDSCYALEEIVSDVPEVMMGNLNPFAQFHFLCF 314 (386)
Q Consensus 242 -------~~~~~~~~~~~~L~~L~l~~~~~l~~~~~l~~l~~L~~L~l~~c~~~~~~~~~~~~~~~~~~~~~~~L~~L~l 314 (386)
... ...+++|+.|++++| .++.++.++.+++|+.|++++|. +.+.. .+..+++|++|++
T Consensus 273 ~~n~l~~~~~---~~~l~~L~~L~L~~n-~l~~~~~~~~l~~L~~L~L~~n~-l~~~~---------~~~~l~~L~~L~l 338 (466)
T 1o6v_A 273 GANQISNISP---LAGLTALTNLELNEN-QLEDISPISNLKNLTYLTLYFNN-ISDIS---------PVSSLTKLQRLFF 338 (466)
T ss_dssp CSSCCCCCGG---GTTCTTCSEEECCSS-CCSCCGGGGGCTTCSEEECCSSC-CSCCG---------GGGGCTTCCEEEC
T ss_pred CCCccCcccc---ccCCCccCeEEcCCC-cccCchhhcCCCCCCEEECcCCc-CCCch---------hhccCccCCEeEC
Confidence 000 003444555555544 33444334445555555555543 33221 2345566666666
Q ss_pred ccccccccccCCCcCCCCccEEeecCc
Q 040192 315 SYLPNLKSIYRKPLPFPHLKEMKVIHC 341 (386)
Q Consensus 315 ~~~~~l~~~~~~~~~~~~L~~L~i~~c 341 (386)
++| .+..++ ....+++|+.|++++|
T Consensus 339 ~~n-~l~~~~-~l~~l~~L~~L~l~~n 363 (466)
T 1o6v_A 339 YNN-KVSDVS-SLANLTNINWLSAGHN 363 (466)
T ss_dssp CSS-CCCCCG-GGTTCTTCCEEECCSS
T ss_pred CCC-ccCCch-hhccCCCCCEEeCCCC
Confidence 666 444443 3455677777777765
No 10
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.92 E-value=8.7e-25 Score=217.07 Aligned_cols=339 Identities=12% Similarity=0.128 Sum_probs=233.1
Q ss_pred cCCCeeechhHHH---hhhccccc-cccEEEEcCCCCCC-C-CcccccccCccEEEecCCcc------------------
Q 040192 11 ETWKCTKEAMLPR---MSSDIEEE-KEEHLVYAGAGLSE-T-PDVRKWEKNVRRLSLMENQI------------------ 66 (386)
Q Consensus 11 ~~~~~~~~d~~~~---~~~~~~~~-~~~~l~~~~~~l~~-~-p~~~~~~~~L~~L~l~~~~~------------------ 66 (386)
..|... .|++.| .++.|... ....+.+.+.++.+ + +++..++ +|++|++++|.+
T Consensus 58 ~~W~~~-~~~c~w~~~~GV~C~~~~~V~~L~L~~~~l~g~lp~~l~~L~-~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~ 135 (636)
T 4eco_A 58 ANWNFN-KELDMWGAQPGVSLNSNGRVTGLSLEGFGASGRVPDAIGQLT-ELEVLALGSHGEKVNERLFGPKGISANMSD 135 (636)
T ss_dssp CCCCCS-SCGGGTTCCTTEEECTTCCEEEEECTTSCCEEEECGGGGGCT-TCCEEESCCGGGGGTCCSBSTTSBCTTCCH
T ss_pred CCCCCC-CCcccccCCCCeEEcCCCCEEEEEecCcccCCcCChHHhcCc-cceEEECcCCccccCCccccccccccCchH
Confidence 357654 788999 99999653 45567778888764 3 4588899 999999998843
Q ss_pred ------------------------------------------------------------cccCCC-CCCCCCcEEeccc
Q 040192 67 ------------------------------------------------------------ENLSEV-PTCPYLRTLFLNN 85 (386)
Q Consensus 67 ------------------------------------------------------------~~~~~~-~~~~~L~~L~l~~ 85 (386)
+++|.. ..+++|++|++++
T Consensus 136 ~~~~~l~l~l~~~~l~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~l~~l~l~~~~n~l~~ip~~l~~l~~L~~L~Ls~ 215 (636)
T 4eco_A 136 EQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITFVSKAVMRLTKLRQFYMGN 215 (636)
T ss_dssp HHHHHHHTHHHHHHTCCCGGGGSCHHHHHHHHHCTTSCCCCCCCCCCCCTTTTTCCSCEEEEECGGGGGCTTCCEEEEES
T ss_pred HHHHHHHhhHHHhhhccCchhhHHHHHHHHhhcCccccccccccccchhhhhhccccCCCccCCHHHhcccCCCEEECcC
Confidence 235544 7899999999999
Q ss_pred CcCCCc------------------CChhhhc--CCCcCceecccCCccccccchhhcCCCccCEEEcCCCC-CCc--ccH
Q 040192 86 NAPLRR------------------IDSGFFQ--SMPRLNVLNLSGAIRLYSFPLGISKLISLQHLDLSNTG-IAE--LPK 142 (386)
Q Consensus 86 ~~~~~~------------------~~~~~~~--~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~-i~~--l~~ 142 (386)
| .+.. +|.. ++ ++++|++|++++|...+.+|..++++++|++|++++|. ++. +|.
T Consensus 216 n-~l~~~~~~~~~~~~~~~~~~~~ip~~-l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~ 293 (636)
T 4eco_A 216 S-PFVAENICEAWENENSEYAQQYKTED-LKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKD 293 (636)
T ss_dssp C-CCCGGGBSSSCSCTTSHHHHHHTTSC-CCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHH
T ss_pred C-ccccccccccccccccchhcccCchh-hhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchH
Confidence 9 5666 7776 67 89999999999994455779899999999999999998 884 888
Q ss_pred hhhcc------CCCCEEEccCCccccccch--hhhcCCCCCcEEEEeccCCc-cccCCCcCccccccc-ceeecCCcccc
Q 040192 143 ELNAL------VNLTCLNLEETWRLTVIPR--RLISSFSSLHVLRIFGSGYS-YSDGMIGNGEFEQLC-GFRRSKSLDVS 212 (386)
Q Consensus 143 ~~~~l------~~L~~L~l~~~~~~~~~~~--~~l~~l~~L~~L~l~~~~~~-~~~~~~~l~~L~~L~-~~~~~~~~~~~ 212 (386)
.++.+ ++|+.|++++|. +..+|. . ++.+++|+.|++++|.+. ....+..+++|+.|. ..+.+. ..+.
T Consensus 294 ~~~~L~~~~~l~~L~~L~L~~n~-l~~ip~~~~-l~~l~~L~~L~L~~N~l~g~ip~~~~l~~L~~L~L~~N~l~-~lp~ 370 (636)
T 4eco_A 294 DWQALADAPVGEKIQIIYIGYNN-LKTFPVETS-LQKMKKLGMLECLYNQLEGKLPAFGSEIKLASLNLAYNQIT-EIPA 370 (636)
T ss_dssp HHHHHHHSGGGGTCCEEECCSSC-CSSCCCHHH-HTTCTTCCEEECCSCCCEEECCCCEEEEEESEEECCSSEEE-ECCT
T ss_pred HHHhhhccccCCCCCEEECCCCc-CCccCchhh-hccCCCCCEEeCcCCcCccchhhhCCCCCCCEEECCCCccc-cccH
Confidence 88776 999999999994 458887 5 899999999999999888 334444555666665 222222 3345
Q ss_pred ccccccC-CcEEEeeccCCccchhcccccccc-----------------cCcccc-------ccCcccEEEecCCCCCCc
Q 040192 213 ALADLKR-LNRLKIAECYGLAELKMDYKSVVQ-----------------NTGQSF-------VFHSLKKFQISYCKELKD 267 (386)
Q Consensus 213 ~l~~~~~-L~~L~l~~~~~~~~~~~~~~~~~~-----------------~~~~~~-------~~~~L~~L~l~~~~~l~~ 267 (386)
.+..+++ |+.|++++|+.. .++. .+.... .+..+. .+++|+.|++++| .++.
T Consensus 371 ~l~~l~~~L~~L~Ls~N~l~-~lp~-~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N-~l~~ 447 (636)
T 4eco_A 371 NFCGFTEQVENLSFAHNKLK-YIPN-IFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNN-QISK 447 (636)
T ss_dssp TSEEECTTCCEEECCSSCCS-SCCS-CCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSS-CCCS
T ss_pred hhhhhcccCcEEEccCCcCc-ccch-hhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCC-ccCc
Confidence 5667777 888888877654 2322 211000 000000 2346666666666 3444
Q ss_pred ccc--ccCCCCCcEEeecCCCccchhhccCcccccCCCCcccccceeeeccccccccccCCCc--CCCCccEEeecCccc
Q 040192 268 LTF--LIFAPNLKSIEVDSCYALEEIVSDVPEVMMGNLNPFAQFHFLCFSYLPNLKSIYRKPL--PFPHLKEMKVIHCLK 343 (386)
Q Consensus 268 ~~~--l~~l~~L~~L~l~~c~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~--~~~~L~~L~i~~c~~ 343 (386)
++. ...+++|+.|++++|. ++.++.............+++|++|+++++ .+..++.... .+++|+.|+++++ +
T Consensus 448 lp~~~~~~l~~L~~L~Ls~N~-l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N-~l~~lp~~~~~~~l~~L~~L~Ls~N-~ 524 (636)
T 4eco_A 448 FPKELFSTGSPLSSINLMGNM-LTEIPKNSLKDENENFKNTYLLTSIDLRFN-KLTKLSDDFRATTLPYLVGIDLSYN-S 524 (636)
T ss_dssp CCTHHHHTTCCCSEEECCSSC-CSBCCSSSSEETTEECTTGGGCCEEECCSS-CCCBCCGGGSTTTCTTCCEEECCSS-C
T ss_pred CCHHHHccCCCCCEEECCCCC-CCCcCHHHhccccccccccCCccEEECcCC-cCCccChhhhhccCCCcCEEECCCC-C
Confidence 432 3457778888888754 555544210000000122348999999998 6777876665 7899999999985 7
Q ss_pred CcCCCCCcccccCcceEEEc
Q 040192 344 LKKLPLDSNRAKERKIVIRG 363 (386)
Q Consensus 344 L~~l~~~~~~~~~~l~i~~~ 363 (386)
++.+|...... ..++.++.
T Consensus 525 l~~ip~~~~~l-~~L~~L~L 543 (636)
T 4eco_A 525 FSKFPTQPLNS-STLKGFGI 543 (636)
T ss_dssp CSSCCCGGGGC-SSCCEEEC
T ss_pred CCCcChhhhcC-CCCCEEEC
Confidence 77788776655 56666655
No 11
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.92 E-value=3.1e-23 Score=203.40 Aligned_cols=143 Identities=29% Similarity=0.351 Sum_probs=119.1
Q ss_pred ccEEEEcCCCCCCCCcccccccCccEEEecCCcccccCC--CCCCCCCcEEecccCcCCCcCChhhhcCCCcCceecccC
Q 040192 33 EEHLVYAGAGLSETPDVRKWEKNVRRLSLMENQIENLSE--VPTCPYLRTLFLNNNAPLRRIDSGFFQSMPRLNVLNLSG 110 (386)
Q Consensus 33 ~~~l~~~~~~l~~~p~~~~~~~~L~~L~l~~~~~~~~~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~ 110 (386)
...+++.+.++.++|... .+ ++++|++++|.+..++. ...+++|++|++++| .+..+++..+..+++|++|++++
T Consensus 33 ~~~l~ls~~~L~~ip~~~-~~-~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~Ls~ 109 (562)
T 3a79_B 33 ESMVDYSNRNLTHVPKDL-PP-RTKALSLSQNSISELRMPDISFLSELRVLRLSHN-RIRSLDFHVFLFNQDLEYLDVSH 109 (562)
T ss_dssp CCEEECTTSCCCSCCTTS-CT-TCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSC-CCCEECTTTTTTCTTCCEEECTT
T ss_pred CcEEEcCCCCCccCCCCC-CC-CcCEEECCCCCccccChhhhccCCCccEEECCCC-CCCcCCHHHhCCCCCCCEEECCC
Confidence 588999999999998622 14 89999999999999764 389999999999999 88888766689999999999999
Q ss_pred CccccccchhhcCCCccCEEEcCCCCCCccc--HhhhccCCCCEEEccCCccccccchhhhcCCCCC--cEEEEeccCC
Q 040192 111 AIRLYSFPLGISKLISLQHLDLSNTGIAELP--KELNALVNLTCLNLEETWRLTVIPRRLISSFSSL--HVLRIFGSGY 185 (386)
Q Consensus 111 ~~~~~~~~~~~~~l~~L~~L~l~~~~i~~l~--~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L--~~L~l~~~~~ 185 (386)
| .+..+|.. .+++|++|++++|.++.++ ..++.+++|++|++++|.. .... +..+++| +.|++++|.+
T Consensus 110 N-~l~~lp~~--~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l-~~~~---~~~l~~L~L~~L~L~~n~l 181 (562)
T 3a79_B 110 N-RLQNISCC--PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKF-RQLD---LLPVAHLHLSCILLDLVSY 181 (562)
T ss_dssp S-CCCEECSC--CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBC-CTTT---TGGGTTSCEEEEEEEESSC
T ss_pred C-cCCccCcc--ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCcc-ccCc---hhhhhhceeeEEEeecccc
Confidence 9 88888866 8999999999999998754 7899999999999999844 3321 4444555 8888888766
No 12
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.92 E-value=1.6e-23 Score=200.66 Aligned_cols=282 Identities=17% Similarity=0.280 Sum_probs=181.6
Q ss_pred cccEEEEcCCCCCCCCcccccccCccEEEecCCcccccCCCCCCCCCcEEecccCcCCCcCChhhhcCCCcCceecccCC
Q 040192 32 KEEHLVYAGAGLSETPDVRKWEKNVRRLSLMENQIENLSEVPTCPYLRTLFLNNNAPLRRIDSGFFQSMPRLNVLNLSGA 111 (386)
Q Consensus 32 ~~~~l~~~~~~l~~~p~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~ 111 (386)
..+.+.+.+..+.++|.+..++ +|++|++++|.+..++....+++|++|++++| .+..+++ +..+++|++|++++|
T Consensus 69 ~L~~L~Ls~n~l~~~~~~~~l~-~L~~L~l~~n~l~~~~~~~~l~~L~~L~L~~n-~l~~~~~--~~~l~~L~~L~l~~n 144 (466)
T 1o6v_A 69 NLTQINFSNNQLTDITPLKNLT-KLVDILMNNNQIADITPLANLTNLTGLTLFNN-QITDIDP--LKNLTNLNRLELSSN 144 (466)
T ss_dssp TCCEEECCSSCCCCCGGGTTCT-TCCEEECCSSCCCCCGGGTTCTTCCEEECCSS-CCCCCGG--GTTCTTCSEEEEEEE
T ss_pred CCCEEECCCCccCCchhhhccc-cCCEEECCCCccccChhhcCCCCCCEEECCCC-CCCCChH--HcCCCCCCEEECCCC
Confidence 3667777777777776677777 77777777777777665677777777777777 5555544 566666666666665
Q ss_pred ccccccch--------------------hhcCCCccCEEEcCCCCCCcccHhhhccCCCCEEEccCCccccccchhhhcC
Q 040192 112 IRLYSFPL--------------------GISKLISLQHLDLSNTGIAELPKELNALVNLTCLNLEETWRLTVIPRRLISS 171 (386)
Q Consensus 112 ~~~~~~~~--------------------~~~~l~~L~~L~l~~~~i~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~ 171 (386)
.+..++. .+..+++|+.|++++|.++.++ .+..+++|+.|++++|. +..++. ++.
T Consensus 145 -~l~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~l~~n~-l~~~~~--~~~ 219 (466)
T 1o6v_A 145 -TISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDIS-VLAKLTNLESLIATNNQ-ISDITP--LGI 219 (466)
T ss_dssp -EECCCGGGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSSCCCCCG-GGGGCTTCSEEECCSSC-CCCCGG--GGG
T ss_pred -ccCCChhhccCCcccEeecCCcccCchhhccCCCCCEEECcCCcCCCCh-hhccCCCCCEEEecCCc-cccccc--ccc
Confidence 4433221 2445566666777766666553 35556666666666663 233332 444
Q ss_pred CCCCcEEEEeccCCccccCC----------------------CcCccccccc-ceeecCCccccccccccCCcEEEeecc
Q 040192 172 FSSLHVLRIFGSGYSYSDGM----------------------IGNGEFEQLC-GFRRSKSLDVSALADLKRLNRLKIAEC 228 (386)
Q Consensus 172 l~~L~~L~l~~~~~~~~~~~----------------------~~l~~L~~L~-~~~~~~~~~~~~l~~~~~L~~L~l~~~ 228 (386)
+++|+.|++++|.+...... ..++.|+.|. ..+...+. ..+..+++|+.|++++|
T Consensus 220 l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~L~~n 297 (466)
T 1o6v_A 220 LTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQISNI--SPLAGLTALTNLELNEN 297 (466)
T ss_dssp CTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCCCGGGTTCTTCSEEECCSSCCCCC--GGGTTCTTCSEEECCSS
T ss_pred cCCCCEEECCCCCcccchhhhcCCCCCEEECCCCccccchhhhcCCCCCEEECCCCccCcc--ccccCCCccCeEEcCCC
Confidence 55555555555544443333 3333333333 12222221 12556677777777777
Q ss_pred CCccchhcccccccccCccccccCcccEEEecCCCCCCccccccCCCCCcEEeecCCCccchhhccCcccccCCCCcccc
Q 040192 229 YGLAELKMDYKSVVQNTGQSFVFHSLKKFQISYCKELKDLTFLIFAPNLKSIEVDSCYALEEIVSDVPEVMMGNLNPFAQ 308 (386)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~l~~l~~L~~L~l~~c~~~~~~~~~~~~~~~~~~~~~~~ 308 (386)
+... ... +. .+++|+.|++++| .++..+.+..+++|+.|++++|. +++.. .+..+++
T Consensus 298 ~l~~-~~~--~~---------~l~~L~~L~L~~n-~l~~~~~~~~l~~L~~L~l~~n~-l~~~~---------~l~~l~~ 354 (466)
T 1o6v_A 298 QLED-ISP--IS---------NLKNLTYLTLYFN-NISDISPVSSLTKLQRLFFYNNK-VSDVS---------SLANLTN 354 (466)
T ss_dssp CCSC-CGG--GG---------GCTTCSEEECCSS-CCSCCGGGGGCTTCCEEECCSSC-CCCCG---------GGTTCTT
T ss_pred cccC-chh--hc---------CCCCCCEEECcCC-cCCCchhhccCccCCEeECCCCc-cCCch---------hhccCCC
Confidence 5543 222 22 7899999999999 57777668899999999999975 66652 5578899
Q ss_pred cceeeeccccccccccCCCcCCCCccEEeecCcccCcCCCCC
Q 040192 309 FHFLCFSYLPNLKSIYRKPLPFPHLKEMKVIHCLKLKKLPLD 350 (386)
Q Consensus 309 L~~L~l~~~~~l~~~~~~~~~~~~L~~L~i~~c~~L~~l~~~ 350 (386)
|+.|++++| .+..+.. ...+++|+.|++++| .++.+|..
T Consensus 355 L~~L~l~~n-~l~~~~~-~~~l~~L~~L~l~~n-~~~~~p~~ 393 (466)
T 1o6v_A 355 INWLSAGHN-QISDLTP-LANLTRITQLGLNDQ-AWTNAPVN 393 (466)
T ss_dssp CCEEECCSS-CCCBCGG-GTTCTTCCEEECCCE-EEECCCBC
T ss_pred CCEEeCCCC-ccCccch-hhcCCCCCEEeccCC-cccCCchh
Confidence 999999999 5555543 677999999999996 56666544
No 13
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.92 E-value=1.3e-23 Score=207.83 Aligned_cols=152 Identities=22% Similarity=0.256 Sum_probs=117.6
Q ss_pred cccEEEEcCCCCCCCCcccccccCccEEEecCCcccccCCC--CCCCCCcEEecccCcCCCcCChhhhcCCCcCceeccc
Q 040192 32 KEEHLVYAGAGLSETPDVRKWEKNVRRLSLMENQIENLSEV--PTCPYLRTLFLNNNAPLRRIDSGFFQSMPRLNVLNLS 109 (386)
Q Consensus 32 ~~~~l~~~~~~l~~~p~~~~~~~~L~~L~l~~~~~~~~~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~ 109 (386)
....+.+.+.++..+|.- +++++++|++++|.+.+++.. ..+++|++|++++| .+..+++..++++++|++|+++
T Consensus 12 ~~~~~~c~~~~l~~ip~~--~~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n-~l~~i~~~~~~~l~~L~~L~Ls 88 (606)
T 3vq2_A 12 PNITYQCMDQKLSKVPDD--IPSSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRC-EIETIEDKAWHGLHHLSNLILT 88 (606)
T ss_dssp TTTEEECTTSCCSSCCTT--SCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTC-CCCEECTTTTTTCTTCCEEECT
T ss_pred CCCceEccCCCcccCCCC--CCCCcCEEECCCCCcCEeChhhccCCccCcEEeCCCC-cccccCHHHhhchhhcCEeECC
Confidence 355788888888888762 223788888888888886553 78888888888888 7777766667888888888888
Q ss_pred CCcccccc-chhhcCCCccCEEEcCCCCCCccc-HhhhccCCCCEEEccCCcccc-ccchhhhcCCCCCcEEEEeccCCc
Q 040192 110 GAIRLYSF-PLGISKLISLQHLDLSNTGIAELP-KELNALVNLTCLNLEETWRLT-VIPRRLISSFSSLHVLRIFGSGYS 186 (386)
Q Consensus 110 ~~~~~~~~-~~~~~~l~~L~~L~l~~~~i~~l~-~~~~~l~~L~~L~l~~~~~~~-~~~~~~l~~l~~L~~L~l~~~~~~ 186 (386)
+| .+..+ |..++++++|++|++++|.+..++ ..++.+++|++|++++|.... .+|.. ++++++|++|++++|.+.
T Consensus 89 ~n-~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~-~~~l~~L~~L~Ls~n~l~ 166 (606)
T 3vq2_A 89 GN-PIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAY-FSNLTNLVHVDLSYNYIQ 166 (606)
T ss_dssp TC-CCCCCCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGG-GGTCTTCCEEECCSSCCC
T ss_pred CC-cccccChhhcCCcccCCEEEccCCccccccccccCCCCCCCEEeCCCCcccceechHh-HhhcCCCCEEEccCCcce
Confidence 88 67766 677888888888888888887666 567888888888888885433 45664 888888888888888776
Q ss_pred cc
Q 040192 187 YS 188 (386)
Q Consensus 187 ~~ 188 (386)
..
T Consensus 167 ~~ 168 (606)
T 3vq2_A 167 TI 168 (606)
T ss_dssp EE
T ss_pred ec
Confidence 54
No 14
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.92 E-value=1e-23 Score=208.02 Aligned_cols=279 Identities=17% Similarity=0.173 Sum_probs=222.2
Q ss_pred ccccCccEEEecCCcccccCCC--CCCCCCcEEecccCcCCCcCChhhhcCCCcCceecccCCccccccc-hhhcCCCcc
Q 040192 51 KWEKNVRRLSLMENQIENLSEV--PTCPYLRTLFLNNNAPLRRIDSGFFQSMPRLNVLNLSGAIRLYSFP-LGISKLISL 127 (386)
Q Consensus 51 ~~~~~L~~L~l~~~~~~~~~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~~~~l~~L 127 (386)
.+. +++.++++++.+..+|.. ..+++|++|++++| .+..+++..++.+++|++|++++| .+..++ ..++.+++|
T Consensus 49 ~l~-~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L 125 (597)
T 3oja_B 49 TLN-NQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDL-QIEEIDTYAFAYAHTIQKLYMGFN-AIRYLPPHVFQNVPLL 125 (597)
T ss_dssp GGC-CCSEEEESSCEESEECTHHHHHCCCCSEEECTTS-CCCEECTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTC
T ss_pred cCC-CceEEEeeCCCCCCcCHHHHccCCCCcEEECCCC-CCCCCChHHhcCCCCCCEEECCCC-cCCCCCHHHHcCCCCC
Confidence 456 899999999999998875 78999999999999 788777766899999999999999 788774 567899999
Q ss_pred CEEEcCCCCCCcccHh-hhccCCCCEEEccCCccccccchhhhcCCCCCcEEEEeccCCccccCCCcCcccccccceeec
Q 040192 128 QHLDLSNTGIAELPKE-LNALVNLTCLNLEETWRLTVIPRRLISSFSSLHVLRIFGSGYSYSDGMIGNGEFEQLCGFRRS 206 (386)
Q Consensus 128 ~~L~l~~~~i~~l~~~-~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~L~~~~~~ 206 (386)
++|++++|.++.+|.. ++.+++|+.|++++| .+..+++..++.+++|+.|++++|.+... ....++.|+.+. .
T Consensus 126 ~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~L~~N~l~~~-~~~~l~~L~~L~----l 199 (597)
T 3oja_B 126 TVLVLERNDLSSLPRGIFHNTPKLTTLSMSNN-NLERIEDDTFQATTSLQNLQLSSNRLTHV-DLSLIPSLFHAN----V 199 (597)
T ss_dssp CEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCBCCTTTTTTCTTCCEEECTTSCCSBC-CGGGCTTCSEEE----C
T ss_pred CEEEeeCCCCCCCCHHHhccCCCCCEEEeeCC-cCCCCChhhhhcCCcCcEEECcCCCCCCc-Chhhhhhhhhhh----c
Confidence 9999999999998866 589999999999999 45555554589999999999999988876 355566666554 2
Q ss_pred CCccccccccccCCcEEEeeccCCccchhcccccccccCccccccCcccEEEecCCCCCCccccccCCCCCcEEeecCCC
Q 040192 207 KSLDVSALADLKRLNRLKIAECYGLAELKMDYKSVVQNTGQSFVFHSLKKFQISYCKELKDLTFLIFAPNLKSIEVDSCY 286 (386)
Q Consensus 207 ~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~l~~l~~L~~L~l~~c~ 286 (386)
.+.....+..+++|+.|++++|.... .+ .. .+++|+.|++++| .++.+++++.+++|+.|+|++|.
T Consensus 200 ~~n~l~~l~~~~~L~~L~ls~n~l~~-~~-~~-----------~~~~L~~L~L~~n-~l~~~~~l~~l~~L~~L~Ls~N~ 265 (597)
T 3oja_B 200 SYNLLSTLAIPIAVEELDASHNSINV-VR-GP-----------VNVELTILKLQHN-NLTDTAWLLNYPGLVEVDLSYNE 265 (597)
T ss_dssp CSSCCSEEECCTTCSEEECCSSCCCE-EE-CS-----------CCSCCCEEECCSS-CCCCCGGGGGCTTCSEEECCSSC
T ss_pred ccCccccccCCchhheeeccCCcccc-cc-cc-----------cCCCCCEEECCCC-CCCCChhhccCCCCCEEECCCCc
Confidence 22233445667789999999986543 21 11 4579999999999 67888889999999999999965
Q ss_pred ccchhhccCcccccCCCCcccccceeeeccccccccccCCCcCCCCccEEeecCcccCcCCCCCcccccCcceEEEc
Q 040192 287 ALEEIVSDVPEVMMGNLNPFAQFHFLCFSYLPNLKSIYRKPLPFPHLKEMKVIHCLKLKKLPLDSNRAKERKIVIRG 363 (386)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~i~~c~~L~~l~~~~~~~~~~l~i~~~ 363 (386)
+..... ..+..+++|++|+|+++ .+..++.....+++|+.|++++| .++.+|...... ..++.++.
T Consensus 266 -l~~~~~-------~~~~~l~~L~~L~Ls~N-~l~~l~~~~~~l~~L~~L~Ls~N-~l~~i~~~~~~l-~~L~~L~L 331 (597)
T 3oja_B 266 -LEKIMY-------HPFVKMQRLERLYISNN-RLVALNLYGQPIPTLKVLDLSHN-HLLHVERNQPQF-DRLENLYL 331 (597)
T ss_dssp -CCEEES-------GGGTTCSSCCEEECTTS-CCCEEECSSSCCTTCCEEECCSS-CCCCCGGGHHHH-TTCSEEEC
T ss_pred -cCCCCH-------HHhcCccCCCEEECCCC-CCCCCCcccccCCCCcEEECCCC-CCCccCcccccC-CCCCEEEC
Confidence 666544 26788999999999999 78888877778999999999996 677777655433 34444443
No 15
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.92 E-value=1.1e-23 Score=213.49 Aligned_cols=328 Identities=13% Similarity=0.162 Sum_probs=214.0
Q ss_pred hhhcccc-ccccEEEEcCCCCCC-C-CcccccccCccEEEe-cCCcc---------------------------------
Q 040192 24 MSSDIEE-EKEEHLVYAGAGLSE-T-PDVRKWEKNVRRLSL-MENQI--------------------------------- 66 (386)
Q Consensus 24 ~~~~~~~-~~~~~l~~~~~~l~~-~-p~~~~~~~~L~~L~l-~~~~~--------------------------------- 66 (386)
.++.|.. .....+.+.+.++.+ + |.+..++ +|+.|++ ++|.+
T Consensus 315 ~GV~C~~~~~V~~L~Ls~~~L~G~ip~~l~~L~-~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~ 393 (876)
T 4ecn_A 315 PGVDLDNNGRVTGLSLAGFGAKGRVPDAIGQLT-ELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLD 393 (876)
T ss_dssp TTEEECTTSCEEEEECTTTCCEEEECGGGGGCT-TCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTC
T ss_pred CceEecCCCCEEEEECccCCCCCcCchHHhccc-cceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhc
Confidence 7888864 245567778888764 3 3588888 9999999 55532
Q ss_pred --------------------------------------------cccCCC-CCCCCCcEEecccCcCCCc----------
Q 040192 67 --------------------------------------------ENLSEV-PTCPYLRTLFLNNNAPLRR---------- 91 (386)
Q Consensus 67 --------------------------------------------~~~~~~-~~~~~L~~L~l~~~~~~~~---------- 91 (386)
.++|.. ..+++|+.|++++| .+..
T Consensus 394 ~~~~~~~s~l~~~~l~~~~~~~~i~~~~~l~l~~l~l~~~~N~L~~IP~~l~~L~~L~~L~Ls~N-~Lsg~~i~~~~~~~ 472 (876)
T 4ecn_A 394 YDQRLNLSDLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITFISKAIQRLTKLQIIYFANS-PFTYDNIAVDWEDA 472 (876)
T ss_dssp CCGGGGSCHHHHHHHHTCTTSCCCCCCCCCCCCTTTTTCCSCEEEEECGGGGGCTTCCEEEEESC-CCCGGGBSSSCSCT
T ss_pred cCcchhhhHHHHHHhhhCccccccccccccchhhceeccccCcccchhHHHhcCCCCCEEECcCC-cCCCCccccccccc
Confidence 124443 77889999999998 5655
Q ss_pred --------CChhhhc--CCCcCceecccCCccccccchhhcCCCccCEEEcCCCC-CCc--ccHhhhccC-------CCC
Q 040192 92 --------IDSGFFQ--SMPRLNVLNLSGAIRLYSFPLGISKLISLQHLDLSNTG-IAE--LPKELNALV-------NLT 151 (386)
Q Consensus 92 --------~~~~~~~--~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~-i~~--l~~~~~~l~-------~L~ 151 (386)
+|.. ++ .+++|++|++++|...+.+|..++++++|+.|++++|. ++. +|..++.++ +|+
T Consensus 473 s~n~~~g~iP~~-l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~ 551 (876)
T 4ecn_A 473 NSDYAKQYENEE-LSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQ 551 (876)
T ss_dssp TSHHHHHHTTSC-CCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCC
T ss_pred ccccccccCChh-hhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCcc
Confidence 7776 45 89999999999884455778888999999999999997 774 787776665 899
Q ss_pred EEEccCCccccccch-hhhcCCCCCcEEEEeccCCccccCCCcCccccccc-ceeecCCccccccccccC-CcEEEeecc
Q 040192 152 CLNLEETWRLTVIPR-RLISSFSSLHVLRIFGSGYSYSDGMIGNGEFEQLC-GFRRSKSLDVSALADLKR-LNRLKIAEC 228 (386)
Q Consensus 152 ~L~l~~~~~~~~~~~-~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~L~-~~~~~~~~~~~~l~~~~~-L~~L~l~~~ 228 (386)
.|++++|. +..+|. ..++.+++|+.|++++|.+.....+..+++|+.|. ..+.+. ..+..+..+++ |+.|++++|
T Consensus 552 ~L~Ls~N~-L~~ip~~~~l~~L~~L~~L~Ls~N~l~~lp~~~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N 629 (876)
T 4ecn_A 552 IFYMGYNN-LEEFPASASLQKMVKLGLLDCVHNKVRHLEAFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHN 629 (876)
T ss_dssp EEECCSSC-CCBCCCHHHHTTCTTCCEEECTTSCCCBCCCCCTTSEESEEECCSSCCS-CCCTTSCEECTTCCEEECCSS
T ss_pred EEEeeCCc-CCccCChhhhhcCCCCCEEECCCCCcccchhhcCCCcceEEECcCCccc-cchHHHhhccccCCEEECcCC
Confidence 99999994 448887 23888999999999998887555556666676666 333333 34556777777 888888887
Q ss_pred CCccchhccccccccc-----------------Ccc-----ccccCcccEEEecCCCCCCcccc--ccCCCCCcEEeecC
Q 040192 229 YGLAELKMDYKSVVQN-----------------TGQ-----SFVFHSLKKFQISYCKELKDLTF--LIFAPNLKSIEVDS 284 (386)
Q Consensus 229 ~~~~~~~~~~~~~~~~-----------------~~~-----~~~~~~L~~L~l~~~~~l~~~~~--l~~l~~L~~L~l~~ 284 (386)
+.. .++ ..+..... +.+ ...+++|+.|++++| .++.++. ...+++|+.|+|++
T Consensus 630 ~L~-~lp-~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N-~L~~lp~~~~~~l~~L~~L~Ls~ 706 (876)
T 4ecn_A 630 KLK-YIP-NIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYN-EIQKFPTELFATGSPISTIILSN 706 (876)
T ss_dssp CCC-SCC-SCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSS-CCCSCCHHHHHTTCCCSEEECCS
T ss_pred CCC-cCc-hhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCC-cCCccCHHHHccCCCCCEEECCC
Confidence 654 232 22110000 000 001236666666666 3444432 23577888888887
Q ss_pred CCccchhhccCcccccCCCCcccccceeeeccccccccccCCCc--CCCCccEEeecCcccCcCCCCCcccccCcceEEE
Q 040192 285 CYALEEIVSDVPEVMMGNLNPFAQFHFLCFSYLPNLKSIYRKPL--PFPHLKEMKVIHCLKLKKLPLDSNRAKERKIVIR 362 (386)
Q Consensus 285 c~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~--~~~~L~~L~i~~c~~L~~l~~~~~~~~~~l~i~~ 362 (386)
|. +..++.............+++|++|+|++| .+..++.... .+++|+.|+++++ +++.+|...... ..++.++
T Consensus 707 N~-L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N-~L~~lp~~l~~~~l~~L~~L~Ls~N-~L~~lp~~l~~L-~~L~~L~ 782 (876)
T 4ecn_A 707 NL-MTSIPENSLKPKDGNYKNTYLLTTIDLRFN-KLTSLSDDFRATTLPYLSNMDVSYN-CFSSFPTQPLNS-SQLKAFG 782 (876)
T ss_dssp CC-CSCCCTTSSSCTTSCCTTGGGCCEEECCSS-CCCCCCGGGSTTTCTTCCEEECCSS-CCSSCCCGGGGC-TTCCEEE
T ss_pred Cc-CCccChHHhccccccccccCCccEEECCCC-CCccchHHhhhccCCCcCEEEeCCC-CCCccchhhhcC-CCCCEEE
Confidence 54 555544211000001223447888888887 6667766554 6788888888774 666676655544 4444443
Q ss_pred c
Q 040192 363 G 363 (386)
Q Consensus 363 ~ 363 (386)
.
T Consensus 783 L 783 (876)
T 4ecn_A 783 I 783 (876)
T ss_dssp C
T ss_pred C
Confidence 3
No 16
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.92 E-value=2.8e-23 Score=197.92 Aligned_cols=259 Identities=17% Similarity=0.153 Sum_probs=183.3
Q ss_pred cccEEEEcCCCCCCCCcccccccCccEEEecCCcccccCCCCCCCCCcEEecccCcCCCcCChhhhcCCCcCceecccCC
Q 040192 32 KEEHLVYAGAGLSETPDVRKWEKNVRRLSLMENQIENLSEVPTCPYLRTLFLNNNAPLRRIDSGFFQSMPRLNVLNLSGA 111 (386)
Q Consensus 32 ~~~~l~~~~~~l~~~p~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~ 111 (386)
....+.+.+..+.++|.+..++ +|++|++++|.+.+++ ...+++|++|++++| .+..++ ++.+++|++|++++|
T Consensus 43 ~L~~L~Ls~n~l~~~~~l~~l~-~L~~L~Ls~n~l~~~~-~~~l~~L~~L~Ls~N-~l~~~~---~~~l~~L~~L~L~~N 116 (457)
T 3bz5_A 43 TLTSLDCHNSSITDMTGIEKLT-GLTKLICTSNNITTLD-LSQNTNLTYLACDSN-KLTNLD---VTPLTKLTYLNCDTN 116 (457)
T ss_dssp TCCEEECCSSCCCCCTTGGGCT-TCSEEECCSSCCSCCC-CTTCTTCSEEECCSS-CCSCCC---CTTCTTCCEEECCSS
T ss_pred CCCEEEccCCCcccChhhcccC-CCCEEEccCCcCCeEc-cccCCCCCEEECcCC-CCceee---cCCCCcCCEEECCCC
Confidence 3678888998999888888888 9999999999998875 688999999999999 677664 678999999999999
Q ss_pred ccccccchhhcCCCccCEEEcCCCCCCcccHhhhccCCCCEEEccCCccccccchhhhcCCCCCcEEEEeccCCccccCC
Q 040192 112 IRLYSFPLGISKLISLQHLDLSNTGIAELPKELNALVNLTCLNLEETWRLTVIPRRLISSFSSLHVLRIFGSGYSYSDGM 191 (386)
Q Consensus 112 ~~~~~~~~~~~~l~~L~~L~l~~~~i~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~ 191 (386)
.+..++ ++.+++|++|++++|.++.++ ++.+++|+.|++++|..++.++ +..+++|+.|++++|.+.+.. +
T Consensus 117 -~l~~l~--~~~l~~L~~L~l~~N~l~~l~--l~~l~~L~~L~l~~n~~~~~~~---~~~l~~L~~L~ls~n~l~~l~-l 187 (457)
T 3bz5_A 117 -KLTKLD--VSQNPLLTYLNCARNTLTEID--VSHNTQLTELDCHLNKKITKLD---VTPQTQLTTLDCSFNKITELD-V 187 (457)
T ss_dssp -CCSCCC--CTTCTTCCEEECTTSCCSCCC--CTTCTTCCEEECTTCSCCCCCC---CTTCTTCCEEECCSSCCCCCC-C
T ss_pred -cCCeec--CCCCCcCCEEECCCCccceec--cccCCcCCEEECCCCCcccccc---cccCCcCCEEECCCCccceec-c
Confidence 787775 788999999999999998875 7788999999999997666663 778899999999999888763 5
Q ss_pred CcCccccccc-ceeecCCccccccccccCCcEEEeeccCCccchhcccccccccCccccccCcccEEEecCCCCCCcccc
Q 040192 192 IGNGEFEQLC-GFRRSKSLDVSALADLKRLNRLKIAECYGLAELKMDYKSVVQNTGQSFVFHSLKKFQISYCKELKDLTF 270 (386)
Q Consensus 192 ~~l~~L~~L~-~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~ 270 (386)
..++.|+.+. ..+.+.+. .+..+++|+.|++++|+... ++ +. .+++|+.|++++| .++.++
T Consensus 188 ~~l~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~~-ip---~~---------~l~~L~~L~l~~N-~l~~~~- 249 (457)
T 3bz5_A 188 SQNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTE-ID---VT---------PLTQLTYFDCSVN-PLTELD- 249 (457)
T ss_dssp TTCTTCCEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSC-CC---CT---------TCTTCSEEECCSS-CCSCCC-
T ss_pred ccCCCCCEEECcCCcCCee---ccccCCCCCEEECcCCcccc-cC---cc---------ccCCCCEEEeeCC-cCCCcC-
Confidence 5666666665 33333332 36677888888888886554 32 22 6778888888877 455443
Q ss_pred ccCCCCCcEEeecCCCccchhhccCcccc-cCCCCcccccceeeecccccccccc
Q 040192 271 LIFAPNLKSIEVDSCYALEEIVSDVPEVM-MGNLNPFAQFHFLCFSYLPNLKSIY 324 (386)
Q Consensus 271 l~~l~~L~~L~l~~c~~~~~~~~~~~~~~-~~~~~~~~~L~~L~l~~~~~l~~~~ 324 (386)
.+.+++|+.|+++++ .++.+........ ......+++|+.|++++|..+..++
T Consensus 250 ~~~l~~L~~L~l~~n-~L~~L~l~~n~~~~~~~~~~l~~L~~L~Ls~n~~l~~l~ 303 (457)
T 3bz5_A 250 VSTLSKLTTLHCIQT-DLLEIDLTHNTQLIYFQAEGCRKIKELDVTHNTQLYLLD 303 (457)
T ss_dssp CTTCTTCCEEECTTC-CCSCCCCTTCTTCCEEECTTCTTCCCCCCTTCTTCCEEE
T ss_pred HHHCCCCCEEeccCC-CCCEEECCCCccCCcccccccccCCEEECCCCcccceec
Confidence 344555555544432 2333221100000 0112345666666666665544444
No 17
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.92 E-value=7.6e-24 Score=207.14 Aligned_cols=161 Identities=21% Similarity=0.260 Sum_probs=119.9
Q ss_pred EEEcCCCCCCCCcccccccCccEEEecCCcccccCC--CCCCCCCcEEecccCcCCCcCChhhhcCCCcCceecccCCcc
Q 040192 36 LVYAGAGLSETPDVRKWEKNVRRLSLMENQIENLSE--VPTCPYLRTLFLNNNAPLRRIDSGFFQSMPRLNVLNLSGAIR 113 (386)
Q Consensus 36 l~~~~~~l~~~p~~~~~~~~L~~L~l~~~~~~~~~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~ 113 (386)
.++.+.++..+|... .+ ++++|++++|.+.+++. ...+++|++|++++| .+..+++..++.+++|++|++++| .
T Consensus 10 c~~~~~~l~~ip~~~-~~-~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n-~i~~~~~~~~~~l~~L~~L~Ls~n-~ 85 (549)
T 2z81_A 10 CDGRSRSFTSIPSGL-TA-AMKSLDLSFNKITYIGHGDLRACANLQVLILKSS-RINTIEGDAFYSLGSLEHLDLSDN-H 85 (549)
T ss_dssp EECTTSCCSSCCSCC-CT-TCCEEECCSSCCCEECSSTTSSCTTCCEEECTTS-CCCEECTTTTTTCTTCCEEECTTS-C
T ss_pred EECCCCccccccccC-CC-CccEEECcCCccCccChhhhhcCCcccEEECCCC-CcCccChhhccccccCCEEECCCC-c
Confidence 455666777777622 24 78899999888887543 378888999999888 777776666788888999999888 7
Q ss_pred ccccch-hhcCCCccCEEEcCCCCCCc--ccHhhhccCCCCEEEccCCccccccchhhhcCCCCCcEEEEeccCCccc--
Q 040192 114 LYSFPL-GISKLISLQHLDLSNTGIAE--LPKELNALVNLTCLNLEETWRLTVIPRRLISSFSSLHVLRIFGSGYSYS-- 188 (386)
Q Consensus 114 ~~~~~~-~~~~l~~L~~L~l~~~~i~~--l~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~-- 188 (386)
+..+++ .++.+++|++|++++|.++. .|..++.+++|++|++++|..++.++...+..+++|++|++++|.+.+.
T Consensus 86 l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 165 (549)
T 2z81_A 86 LSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQS 165 (549)
T ss_dssp CCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECT
T ss_pred cCccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccCh
Confidence 776654 48888889999998888874 4567788888999998888667777755588888888888888887653
Q ss_pred cCCCcCcccccc
Q 040192 189 DGMIGNGEFEQL 200 (386)
Q Consensus 189 ~~~~~l~~L~~L 200 (386)
..+..+++|+.+
T Consensus 166 ~~l~~l~~L~~L 177 (549)
T 2z81_A 166 QSLKSIRDIHHL 177 (549)
T ss_dssp TTTTTCSEEEEE
T ss_pred hhhhccccCceE
Confidence 233444444443
No 18
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.91 E-value=4.9e-23 Score=211.06 Aligned_cols=193 Identities=19% Similarity=0.217 Sum_probs=145.6
Q ss_pred ccEEEEcCCCCCCCCcccccccCccEEEecCCcccccCC-C-CCCCCCcEEecccCcCCCcCChhhhcCCCcCceecccC
Q 040192 33 EEHLVYAGAGLSETPDVRKWEKNVRRLSLMENQIENLSE-V-PTCPYLRTLFLNNNAPLRRIDSGFFQSMPRLNVLNLSG 110 (386)
Q Consensus 33 ~~~l~~~~~~l~~~p~~~~~~~~L~~L~l~~~~~~~~~~-~-~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~ 110 (386)
...+++.+.++..+|. +++++++|++++|.+..+.. . ..+++|++|++++|.....+++..++++++|++|++++
T Consensus 6 ~~~~dcs~~~L~~vP~---lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~ 82 (844)
T 3j0a_A 6 GRIAFYRFCNLTQVPQ---VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGS 82 (844)
T ss_dssp TEEEEESCCCSSCCCS---SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTT
T ss_pred ceEEEccCCCCCCCCC---CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCC
Confidence 5678899999999997 44499999999999998543 3 89999999999999666777666689999999999999
Q ss_pred Ccccccc-chhhcCCCccCEEEcCCCCCCc-ccHh--hhccCCCCEEEccCCccccccchhhhcCCCCCcEEEEeccCCc
Q 040192 111 AIRLYSF-PLGISKLISLQHLDLSNTGIAE-LPKE--LNALVNLTCLNLEETWRLTVIPRRLISSFSSLHVLRIFGSGYS 186 (386)
Q Consensus 111 ~~~~~~~-~~~~~~l~~L~~L~l~~~~i~~-l~~~--~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 186 (386)
| .+..+ |..++++++|++|++++|.++. +|.. ++.+++|++|++++|......+...++++++|++|++++|.+.
T Consensus 83 N-~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~ 161 (844)
T 3j0a_A 83 S-KIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIF 161 (844)
T ss_dssp C-CCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCC
T ss_pred C-cCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCC
Confidence 9 77765 7889999999999999999984 5544 8899999999999995544444334899999999999999887
Q ss_pred cc--cCCCcC--ccccccc-ceeecCCccccccccccC------CcEEEeeccC
Q 040192 187 YS--DGMIGN--GEFEQLC-GFRRSKSLDVSALADLKR------LNRLKIAECY 229 (386)
Q Consensus 187 ~~--~~~~~l--~~L~~L~-~~~~~~~~~~~~l~~~~~------L~~L~l~~~~ 229 (386)
.. ..+..+ ++|+.+. ..+...+..+..+..+++ |+.|++++|.
T Consensus 162 ~~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~ 215 (844)
T 3j0a_A 162 LVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNG 215 (844)
T ss_dssp CCCSGGGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCC
T ss_pred eeCHHHcccccCCccceEECCCCccccccccchhhcCCccccCceeEEecCCCc
Confidence 65 122222 4455444 222333333333333333 7777777664
No 19
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.91 E-value=2.9e-24 Score=194.97 Aligned_cols=250 Identities=17% Similarity=0.208 Sum_probs=157.1
Q ss_pred CccEEEecCCcccc---cCCC-CCCCCCcEEeccc-CcCCCcCChhhhcCCCcCceecccCCcccc-ccchhhcCCCccC
Q 040192 55 NVRRLSLMENQIEN---LSEV-PTCPYLRTLFLNN-NAPLRRIDSGFFQSMPRLNVLNLSGAIRLY-SFPLGISKLISLQ 128 (386)
Q Consensus 55 ~L~~L~l~~~~~~~---~~~~-~~~~~L~~L~l~~-~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-~~~~~~~~l~~L~ 128 (386)
++++|+++++.+.+ +|.. ..+++|++|++++ |...+.+|.. ++.+++|++|++++| .+. .+|..+..+++|+
T Consensus 51 ~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~-l~~l~~L~~L~Ls~n-~l~~~~p~~~~~l~~L~ 128 (313)
T 1ogq_A 51 RVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPA-IAKLTQLHYLYITHT-NVSGAIPDFLSQIKTLV 128 (313)
T ss_dssp CEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGG-GGGCTTCSEEEEEEE-CCEEECCGGGGGCTTCC
T ss_pred eEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChh-HhcCCCCCEEECcCC-eeCCcCCHHHhCCCCCC
Confidence 57777777777764 4443 6777777777774 5233345544 677777777777777 555 5677777777777
Q ss_pred EEEcCCCCCC-cccHhhhccCCCCEEEccCCccccccchhhhcCCC-CCcEEEEeccCCccccCCCcCcccccccceeec
Q 040192 129 HLDLSNTGIA-ELPKELNALVNLTCLNLEETWRLTVIPRRLISSFS-SLHVLRIFGSGYSYSDGMIGNGEFEQLCGFRRS 206 (386)
Q Consensus 129 ~L~l~~~~i~-~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~-~L~~L~l~~~~~~~~~~~~~l~~L~~L~~~~~~ 206 (386)
+|++++|.++ .+|..+..+++|++|++++|.....+|.. +..++ +|+.|++++|.+.+.
T Consensus 129 ~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~-l~~l~~~L~~L~L~~N~l~~~------------------ 189 (313)
T 1ogq_A 129 TLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDS-YGSFSKLFTSMTISRNRLTGK------------------ 189 (313)
T ss_dssp EEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGG-GGCCCTTCCEEECCSSEEEEE------------------
T ss_pred EEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHH-HhhhhhcCcEEECcCCeeecc------------------
Confidence 7777777776 66677777777777777777554466665 66666 777777777766533
Q ss_pred CCccccccccccCCcEEEeeccCCccchhcccccccccCccccccCcccEEEecCCCCCCccccccCCCCCcEEeecCCC
Q 040192 207 KSLDVSALADLKRLNRLKIAECYGLAELKMDYKSVVQNTGQSFVFHSLKKFQISYCKELKDLTFLIFAPNLKSIEVDSCY 286 (386)
Q Consensus 207 ~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~l~~l~~L~~L~l~~c~ 286 (386)
.+..+..++ |+.|++++|+.... ....+. .+++|+.|++++|.....++.+..+++|++|++++|.
T Consensus 190 ---~~~~~~~l~-L~~L~Ls~N~l~~~-~~~~~~---------~l~~L~~L~L~~N~l~~~~~~~~~l~~L~~L~Ls~N~ 255 (313)
T 1ogq_A 190 ---IPPTFANLN-LAFVDLSRNMLEGD-ASVLFG---------SDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNR 255 (313)
T ss_dssp ---CCGGGGGCC-CSEEECCSSEEEEC-CGGGCC---------TTSCCSEEECCSSEECCBGGGCCCCTTCCEEECCSSC
T ss_pred ---CChHHhCCc-ccEEECcCCcccCc-CCHHHh---------cCCCCCEEECCCCceeeecCcccccCCCCEEECcCCc
Confidence 122334444 77777777654432 223333 5677777777777433344555666777777777754
Q ss_pred ccchhhccCcccccCCCCcccccceeeeccccccccccCCCcCCCCccEEeecCcccCcCCC
Q 040192 287 ALEEIVSDVPEVMMGNLNPFAQFHFLCFSYLPNLKSIYRKPLPFPHLKEMKVIHCLKLKKLP 348 (386)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~i~~c~~L~~l~ 348 (386)
++.... ..+..+++|++|+++++.--..+|.. ..+++|+.+++.+++.+...|
T Consensus 256 -l~~~~p-------~~l~~l~~L~~L~Ls~N~l~~~ip~~-~~l~~L~~l~l~~N~~lc~~p 308 (313)
T 1ogq_A 256 -IYGTLP-------QGLTQLKFLHSLNVSFNNLCGEIPQG-GNLQRFDVSAYANNKCLCGSP 308 (313)
T ss_dssp -CEECCC-------GGGGGCTTCCEEECCSSEEEEECCCS-TTGGGSCGGGTCSSSEEESTT
T ss_pred -ccCcCC-------hHHhcCcCCCEEECcCCcccccCCCC-ccccccChHHhcCCCCccCCC
Confidence 442222 14566677777777777333345543 556777777777666555443
No 20
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.91 E-value=8e-24 Score=210.15 Aligned_cols=299 Identities=12% Similarity=0.195 Sum_probs=196.3
Q ss_pred cccEEEEcCCCCCC------------------CCc-cc--ccccCccEEEecCCcccc-cCCC-CCCCCCcEEecccCcC
Q 040192 32 KEEHLVYAGAGLSE------------------TPD-VR--KWEKNVRRLSLMENQIEN-LSEV-PTCPYLRTLFLNNNAP 88 (386)
Q Consensus 32 ~~~~l~~~~~~l~~------------------~p~-~~--~~~~~L~~L~l~~~~~~~-~~~~-~~~~~L~~L~l~~~~~ 88 (386)
....+.+.+..+.+ +|. +. .++ +|++|++++|.+.+ +|.. ..+++|++|++++|..
T Consensus 207 ~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~-~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~ 285 (636)
T 4eco_A 207 KLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLK-DLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRG 285 (636)
T ss_dssp TCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCT-TCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTT
T ss_pred CCCEEECcCCccccccccccccccccchhcccCchhhhhcccC-CCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCC
Confidence 47788888888888 775 55 678 89999999998776 6655 7888999999998842
Q ss_pred CC--cCChhhhcCC------CcCceecccCCccccccch--hhcCCCccCEEEcCCCCCC-cccHhhhccCCCCEEEccC
Q 040192 89 LR--RIDSGFFQSM------PRLNVLNLSGAIRLYSFPL--GISKLISLQHLDLSNTGIA-ELPKELNALVNLTCLNLEE 157 (386)
Q Consensus 89 ~~--~~~~~~~~~l------~~L~~L~l~~~~~~~~~~~--~~~~l~~L~~L~l~~~~i~-~l~~~~~~l~~L~~L~l~~ 157 (386)
+. .+|.. ++.+ ++|++|++++| .+..+|. .++.+++|++|++++|.++ .+| .++.+++|+.|++++
T Consensus 286 l~~~~lp~~-~~~L~~~~~l~~L~~L~L~~n-~l~~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~ 362 (636)
T 4eco_A 286 ISGEQLKDD-WQALADAPVGEKIQIIYIGYN-NLKTFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAY 362 (636)
T ss_dssp SCHHHHHHH-HHHHHHSGGGGTCCEEECCSS-CCSSCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEESEEECCS
T ss_pred CccccchHH-HHhhhccccCCCCCEEECCCC-cCCccCchhhhccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEECCC
Confidence 54 35555 4444 78888888888 7777777 7788888888888888877 777 667777777777777
Q ss_pred CccccccchhhhcCCCC-CcEEEEeccCCccccC-CCc--Cccccccc-ceeecCCccc---------------------
Q 040192 158 TWRLTVIPRRLISSFSS-LHVLRIFGSGYSYSDG-MIG--NGEFEQLC-GFRRSKSLDV--------------------- 211 (386)
Q Consensus 158 ~~~~~~~~~~~l~~l~~-L~~L~l~~~~~~~~~~-~~~--l~~L~~L~-~~~~~~~~~~--------------------- 211 (386)
| .+..+|.. +..+++ |++|++++|.+..... +.. +++|+.+. ..+.+.+..+
T Consensus 363 N-~l~~lp~~-l~~l~~~L~~L~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~L 440 (636)
T 4eco_A 363 N-QITEIPAN-FCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINL 440 (636)
T ss_dssp S-EEEECCTT-SEEECTTCCEEECCSSCCSSCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEEC
T ss_pred C-ccccccHh-hhhhcccCcEEEccCCcCcccchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEEC
Confidence 7 34466665 666776 7777777776664321 111 12344443 1122222111
Q ss_pred ----------cccccccCCcEEEeeccCCccchhcccccccc--cCccccccCcccEEEecCCCCCCcccc-cc--CCCC
Q 040192 212 ----------SALADLKRLNRLKIAECYGLAELKMDYKSVVQ--NTGQSFVFHSLKKFQISYCKELKDLTF-LI--FAPN 276 (386)
Q Consensus 212 ----------~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~--~~~~~~~~~~L~~L~l~~~~~l~~~~~-l~--~l~~ 276 (386)
..+..+++|+.|++++|+.. .++...+.... .. .+++|+.|++++| .++.++. +. .+++
T Consensus 441 s~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~~~~~~~~----~l~~L~~L~Ls~N-~l~~lp~~~~~~~l~~ 514 (636)
T 4eco_A 441 SNNQISKFPKELFSTGSPLSSINLMGNMLT-EIPKNSLKDENENFK----NTYLLTSIDLRFN-KLTKLSDDFRATTLPY 514 (636)
T ss_dssp CSSCCCSCCTHHHHTTCCCSEEECCSSCCS-BCCSSSSEETTEECT----TGGGCCEEECCSS-CCCBCCGGGSTTTCTT
T ss_pred cCCccCcCCHHHHccCCCCCEEECCCCCCC-CcCHHHhcccccccc----ccCCccEEECcCC-cCCccChhhhhccCCC
Confidence 22233566666666666544 23333322000 00 1238888888888 4555543 44 7888
Q ss_pred CcEEeecCCCccchhhccCcccccCCCCcccccceeeecc------ccccccccCCCcCCCCccEEeecCcccCcCCCCC
Q 040192 277 LKSIEVDSCYALEEIVSDVPEVMMGNLNPFAQFHFLCFSY------LPNLKSIYRKPLPFPHLKEMKVIHCLKLKKLPLD 350 (386)
Q Consensus 277 L~~L~l~~c~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~------~~~l~~~~~~~~~~~~L~~L~i~~c~~L~~l~~~ 350 (386)
|+.|+|++|. ++.++. .+..+++|++|++++ +.....++.....+++|+.|++++| +++.+|..
T Consensus 515 L~~L~Ls~N~-l~~ip~--------~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N-~l~~ip~~ 584 (636)
T 4eco_A 515 LVGIDLSYNS-FSKFPT--------QPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSN-DIRKVNEK 584 (636)
T ss_dssp CCEEECCSSC-CSSCCC--------GGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSS-CCCBCCSC
T ss_pred cCEEECCCCC-CCCcCh--------hhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCCC-cCCccCHh
Confidence 8888888855 555433 556788999999854 4335566667778899999999885 56888877
Q ss_pred cc
Q 040192 351 SN 352 (386)
Q Consensus 351 ~~ 352 (386)
..
T Consensus 585 ~~ 586 (636)
T 4eco_A 585 IT 586 (636)
T ss_dssp CC
T ss_pred Hh
Confidence 54
No 21
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.91 E-value=3.8e-23 Score=204.59 Aligned_cols=178 Identities=19% Similarity=0.209 Sum_probs=73.1
Q ss_pred cCCCcCceecccCCccccccchhhcCCCccCEEEcCCCCCCcc-cHhhhccCCCCEEEccCCccccccchhhhcCCCCCc
Q 040192 98 QSMPRLNVLNLSGAIRLYSFPLGISKLISLQHLDLSNTGIAEL-PKELNALVNLTCLNLEETWRLTVIPRRLISSFSSLH 176 (386)
Q Consensus 98 ~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~l-~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~ 176 (386)
+.+++|++|++++| .+..+|..+..+++|++|++++|.+..+ |..+..+++|+.|++++|.....++...+..+++|+
T Consensus 275 ~~l~~L~~L~l~~n-~l~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~ 353 (606)
T 3t6q_A 275 HCFSGLQELDLTAT-HLSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLR 353 (606)
T ss_dssp TTCTTCSEEECTTS-CCSCCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCC
T ss_pred ccccCCCEEeccCC-ccCCCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhhccCcCC
Confidence 33444444444444 3444444444444444444444444433 223344444444444444333333333344444455
Q ss_pred EEEEeccCCcccc----CCCcCccccccc-ceeecCCccccccccccCCcEEEeeccCCccchhcccccccccCcccccc
Q 040192 177 VLRIFGSGYSYSD----GMIGNGEFEQLC-GFRRSKSLDVSALADLKRLNRLKIAECYGLAELKMDYKSVVQNTGQSFVF 251 (386)
Q Consensus 177 ~L~l~~~~~~~~~----~~~~l~~L~~L~-~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (386)
+|++++|.+.... .+..++.|+.+. ..+...+..+..+..+++|+.|++++|+.....+...+. .+
T Consensus 354 ~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~---------~l 424 (606)
T 3t6q_A 354 ELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQ---------NL 424 (606)
T ss_dssp EEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTT---------TC
T ss_pred EEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhh---------Cc
Confidence 5554444443321 223333333333 111112222333444455555555554433211112122 44
Q ss_pred CcccEEEecCCCCCCcc--ccccCCCCCcEEeecCCC
Q 040192 252 HSLKKFQISYCKELKDL--TFLIFAPNLKSIEVDSCY 286 (386)
Q Consensus 252 ~~L~~L~l~~~~~l~~~--~~l~~l~~L~~L~l~~c~ 286 (386)
++|+.|++++|. ++.. ..++.+++|++|++++|.
T Consensus 425 ~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~L~~n~ 460 (606)
T 3t6q_A 425 HLLKVLNLSHSL-LDISSEQLFDGLPALQHLNLQGNH 460 (606)
T ss_dssp TTCCEEECTTCC-CBTTCTTTTTTCTTCCEEECTTCB
T ss_pred ccCCEEECCCCc-cCCcCHHHHhCCCCCCEEECCCCC
Confidence 555555555553 2221 224445555555555543
No 22
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.91 E-value=1e-23 Score=201.35 Aligned_cols=287 Identities=15% Similarity=0.159 Sum_probs=216.0
Q ss_pred cccEEEEcCCCCCCC-C-cccccccCccEEEecCCcccc-cCC--CCCCCCCcEEecccCcCCCcCChhhhcCCCcCcee
Q 040192 32 KEEHLVYAGAGLSET-P-DVRKWEKNVRRLSLMENQIEN-LSE--VPTCPYLRTLFLNNNAPLRRIDSGFFQSMPRLNVL 106 (386)
Q Consensus 32 ~~~~l~~~~~~l~~~-p-~~~~~~~~L~~L~l~~~~~~~-~~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L 106 (386)
....+++.+..+.++ | .+..++ +|++|++++|.+.. ++. ...+++|++|++++| .+..+.+..++++++|++|
T Consensus 31 ~l~~L~Ls~n~i~~~~~~~~~~l~-~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L 108 (455)
T 3v47_A 31 HVNYVDLSLNSIAELNETSFSRLQ-DLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYN-QFLQLETGAFNGLANLEVL 108 (455)
T ss_dssp TCCEEECCSSCCCEECTTTTSSCT-TCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTC-TTCEECTTTTTTCTTCCEE
T ss_pred ccCEEEecCCccCcCChhHhccCc-cccEEECcCCcccceECcccccccccCCEEeCCCC-ccCccChhhccCcccCCEE
Confidence 478899999988876 3 378888 99999999998874 543 388999999999999 6776655558999999999
Q ss_pred cccCCccccc-cchh--hcCCCccCEEEcCCCCCCcc-cHh-hhccCCCCEEEccCCccccccchhhhc-----------
Q 040192 107 NLSGAIRLYS-FPLG--ISKLISLQHLDLSNTGIAEL-PKE-LNALVNLTCLNLEETWRLTVIPRRLIS----------- 170 (386)
Q Consensus 107 ~l~~~~~~~~-~~~~--~~~l~~L~~L~l~~~~i~~l-~~~-~~~l~~L~~L~l~~~~~~~~~~~~~l~----------- 170 (386)
++++| .+.. .+.. +..+++|++|++++|.++.+ |.. +..+++|+.|++++|......+.. +.
T Consensus 109 ~L~~n-~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~-l~~l~~~~L~~L~ 186 (455)
T 3v47_A 109 TLTQC-NLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEED-LLNFQGKHFTLLR 186 (455)
T ss_dssp ECTTS-CCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTT-SGGGTTCEEEEEE
T ss_pred eCCCC-CCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhh-hhccccccccccc
Confidence 99999 7764 3443 88899999999999999876 443 789999999999999544333322 32
Q ss_pred -----------------------CCCCCcEEEEeccCCcccc--CC------C---------------------------
Q 040192 171 -----------------------SFSSLHVLRIFGSGYSYSD--GM------I--------------------------- 192 (386)
Q Consensus 171 -----------------------~l~~L~~L~l~~~~~~~~~--~~------~--------------------------- 192 (386)
.+++|+.|++++|.+.+.. .+ .
T Consensus 187 l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 266 (455)
T 3v47_A 187 LSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDN 266 (455)
T ss_dssp CTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCT
T ss_pred cccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccccchhhhccCcc
Confidence 3367888888888765420 00 0
Q ss_pred ------cCccccccc-ceeecCCccccccccccCCcEEEeeccCCccchhcccccccccCccccccCcccEEEecCCCCC
Q 040192 193 ------GNGEFEQLC-GFRRSKSLDVSALADLKRLNRLKIAECYGLAELKMDYKSVVQNTGQSFVFHSLKKFQISYCKEL 265 (386)
Q Consensus 193 ------~l~~L~~L~-~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l 265 (386)
....|+.+. ..+.+.+..+..+..+++|++|++++|+... .....+. .+++|+.|++++| .+
T Consensus 267 ~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~-~~~~~~~---------~l~~L~~L~Ls~N-~l 335 (455)
T 3v47_A 267 FTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINK-IDDNAFW---------GLTHLLKLNLSQN-FL 335 (455)
T ss_dssp TTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCE-ECTTTTT---------TCTTCCEEECCSS-CC
T ss_pred cccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccc-cChhHhc---------CcccCCEEECCCC-cc
Confidence 012333333 2233334446678889999999999997664 4344444 7899999999999 56
Q ss_pred Ccc--ccccCCCCCcEEeecCCCccchhhccCcccccCCCCcccccceeeeccccccccccCC-CcCCCCccEEeecCcc
Q 040192 266 KDL--TFLIFAPNLKSIEVDSCYALEEIVSDVPEVMMGNLNPFAQFHFLCFSYLPNLKSIYRK-PLPFPHLKEMKVIHCL 342 (386)
Q Consensus 266 ~~~--~~l~~l~~L~~L~l~~c~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~-~~~~~~L~~L~i~~c~ 342 (386)
+.+ ..+..+++|++|++++|. ++.+.. ..+..+++|++|+++++ .+.+++.. ...+++|+.|++++++
T Consensus 336 ~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~-------~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N~ 406 (455)
T 3v47_A 336 GSIDSRMFENLDKLEVLDLSYNH-IRALGD-------QSFLGLPNLKELALDTN-QLKSVPDGIFDRLTSLQKIWLHTNP 406 (455)
T ss_dssp CEECGGGGTTCTTCCEEECCSSC-CCEECT-------TTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred CCcChhHhcCcccCCEEECCCCc-ccccCh-------hhccccccccEEECCCC-ccccCCHhHhccCCcccEEEccCCC
Confidence 654 346889999999999965 666655 37788999999999999 77777654 4679999999999864
No 23
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.91 E-value=1.4e-22 Score=196.91 Aligned_cols=143 Identities=22% Similarity=0.276 Sum_probs=105.5
Q ss_pred ccEEEEcCCCCCCCCcccccccCccEEEecCCcccccCC--CCCCCCCcEEecccCcCCCcCChhhhcCCCcCceecccC
Q 040192 33 EEHLVYAGAGLSETPDVRKWEKNVRRLSLMENQIENLSE--VPTCPYLRTLFLNNNAPLRRIDSGFFQSMPRLNVLNLSG 110 (386)
Q Consensus 33 ~~~l~~~~~~l~~~p~~~~~~~~L~~L~l~~~~~~~~~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~ 110 (386)
.+.+++++.++.++|.-.. + ++++|++++|.+.+++. ...+++|++|++++| .+..+++..++.+++|++|++++
T Consensus 2 ~~~l~ls~n~l~~ip~~~~-~-~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~Ls~ 78 (520)
T 2z7x_B 2 EFLVDRSKNGLIHVPKDLS-Q-KTTILNISQNYISELWTSDILSLSKLRILIISHN-RIQYLDISVFKFNQELEYLDLSH 78 (520)
T ss_dssp CCEEECTTSCCSSCCCSCC-T-TCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSS-CCCEEEGGGGTTCTTCCEEECCS
T ss_pred cceEecCCCCccccccccc-c-cccEEECCCCcccccChhhccccccccEEecCCC-ccCCcChHHhhcccCCCEEecCC
Confidence 4567788888888875222 4 88888888888887653 278888888888888 67766555578888888888888
Q ss_pred CccccccchhhcCCCccCEEEcCCCCCCc--ccHhhhccCCCCEEEccCCccccccchhhhcCCCCC--cEEEEeccCC
Q 040192 111 AIRLYSFPLGISKLISLQHLDLSNTGIAE--LPKELNALVNLTCLNLEETWRLTVIPRRLISSFSSL--HVLRIFGSGY 185 (386)
Q Consensus 111 ~~~~~~~~~~~~~l~~L~~L~l~~~~i~~--l~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L--~~L~l~~~~~ 185 (386)
| .+..+|.. .+++|++|++++|.++. +|..++.+++|++|++++|... . ..+..+++| +.|++++|.+
T Consensus 79 N-~l~~lp~~--~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~-~---~~~~~l~~L~L~~L~l~~n~l 150 (520)
T 2z7x_B 79 N-KLVKISCH--PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLE-K---SSVLPIAHLNISKVLLVLGET 150 (520)
T ss_dssp S-CCCEEECC--CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCC-G---GGGGGGTTSCEEEEEEEECTT
T ss_pred C-ceeecCcc--ccCCccEEeccCCccccccchhhhccCCcceEEEecCcccc-h---hhccccccceeeEEEeecccc
Confidence 8 77777765 78888888888888875 5677888888888888887432 2 124555555 7777766655
No 24
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.91 E-value=1.8e-23 Score=190.83 Aligned_cols=88 Identities=23% Similarity=0.348 Sum_probs=49.6
Q ss_pred CCCcEEecccCcCCCcCChhhhcCCCcCceecccCCccccccchhhcCCCccCEEEcCCCCCCcccHhhhccCCCCEEEc
Q 040192 76 PYLRTLFLNNNAPLRRIDSGFFQSMPRLNVLNLSGAIRLYSFPLGISKLISLQHLDLSNTGIAELPKELNALVNLTCLNL 155 (386)
Q Consensus 76 ~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~l~~~~~~l~~L~~L~l 155 (386)
++++.|++++| .+..+|.. +..+++|++|++++| .+..+|..++.+++|++|++++|.++.+|..++.+++|+.|++
T Consensus 81 ~~l~~L~L~~n-~l~~lp~~-l~~l~~L~~L~L~~n-~l~~lp~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L 157 (328)
T 4fcg_A 81 PGRVALELRSV-PLPQFPDQ-AFRLSHLQHMTIDAA-GLMELPDTMQQFAGLETLTLARNPLRALPASIASLNRLRELSI 157 (328)
T ss_dssp TTCCEEEEESS-CCSSCCSC-GGGGTTCSEEEEESS-CCCCCCSCGGGGTTCSEEEEESCCCCCCCGGGGGCTTCCEEEE
T ss_pred cceeEEEccCC-CchhcChh-hhhCCCCCEEECCCC-CccchhHHHhccCCCCEEECCCCccccCcHHHhcCcCCCEEEC
Confidence 45555555555 44455544 344555666666555 5555555555566666666666655555555556666666666
Q ss_pred cCCccccccch
Q 040192 156 EETWRLTVIPR 166 (386)
Q Consensus 156 ~~~~~~~~~~~ 166 (386)
++|..++.+|.
T Consensus 158 ~~n~~~~~~p~ 168 (328)
T 4fcg_A 158 RACPELTELPE 168 (328)
T ss_dssp EEETTCCCCCS
T ss_pred CCCCCccccCh
Confidence 65545555554
No 25
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.91 E-value=2.8e-23 Score=191.75 Aligned_cols=269 Identities=20% Similarity=0.200 Sum_probs=206.8
Q ss_pred ccEEEEcCCCCCCCCcccccccCccEEEecCCcccccCC--CCCCCCCcEEecccCcCCCcCChhhhcCCCcCceecccC
Q 040192 33 EEHLVYAGAGLSETPDVRKWEKNVRRLSLMENQIENLSE--VPTCPYLRTLFLNNNAPLRRIDSGFFQSMPRLNVLNLSG 110 (386)
Q Consensus 33 ~~~l~~~~~~l~~~p~~~~~~~~L~~L~l~~~~~~~~~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~ 110 (386)
...+++.+.++..+|.- +.+++++|++++|.+..++. ...+++|++|++++| .+..+++..++.+++|++|++++
T Consensus 33 ~~~c~~~~~~l~~iP~~--~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~Ls~ 109 (353)
T 2z80_A 33 NGICKGSSGSLNSIPSG--LTEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSN-GINTIEEDSFSSLGSLEHLDLSY 109 (353)
T ss_dssp TSEEECCSTTCSSCCTT--CCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTS-CCCEECTTTTTTCTTCCEEECCS
T ss_pred CeEeeCCCCCccccccc--ccccCcEEECCCCcCcccCHHHhccCCCCCEEECCCC-ccCccCHhhcCCCCCCCEEECCC
Confidence 44577888899999862 22389999999999999766 389999999999999 77777766689999999999999
Q ss_pred Cccccccchh-hcCCCccCEEEcCCCCCCcccH--hhhccCCCCEEEccCCccccccchhhhcCCCCCcEEEEeccCCcc
Q 040192 111 AIRLYSFPLG-ISKLISLQHLDLSNTGIAELPK--ELNALVNLTCLNLEETWRLTVIPRRLISSFSSLHVLRIFGSGYSY 187 (386)
Q Consensus 111 ~~~~~~~~~~-~~~l~~L~~L~l~~~~i~~l~~--~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~ 187 (386)
| .+..++.. ++.+++|++|++++|.++.+|. .+..+++|+.|++++|..+..++...+..+++|++|++++|.+..
T Consensus 110 n-~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~ 188 (353)
T 2z80_A 110 N-YLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQS 188 (353)
T ss_dssp S-CCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCE
T ss_pred C-cCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCc
Confidence 9 88888654 8899999999999999998886 678899999999999966777766568999999999999997766
Q ss_pred ccCCCcCcccccccceeecCCccccccccccCCcEEEeeccCCccchhcccccccccCccccccCcccEEEecCCCCCCc
Q 040192 188 SDGMIGNGEFEQLCGFRRSKSLDVSALADLKRLNRLKIAECYGLAELKMDYKSVVQNTGQSFVFHSLKKFQISYCKELKD 267 (386)
Q Consensus 188 ~~~~~~l~~L~~L~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~ 267 (386)
. .+..+..+++|++|++++|.... .+...+. .+++|+.|++++|. ++.
T Consensus 189 ~---------------------~~~~l~~l~~L~~L~l~~n~l~~-~~~~~~~---------~~~~L~~L~L~~n~-l~~ 236 (353)
T 2z80_A 189 Y---------------------EPKSLKSIQNVSHLILHMKQHIL-LLEIFVD---------VTSSVECLELRDTD-LDT 236 (353)
T ss_dssp E---------------------CTTTTTTCSEEEEEEEECSCSTT-HHHHHHH---------HTTTEEEEEEESCB-CTT
T ss_pred c---------------------CHHHHhccccCCeecCCCCcccc-chhhhhh---------hcccccEEECCCCc-ccc
Confidence 4 13445667889999999887533 4433333 57899999999984 554
Q ss_pred cc-----cccCCCCCcEEeecCCCccchhhccCcccccCCCCcccccceeeeccccccccccCCC-cCCCCccEEeecCc
Q 040192 268 LT-----FLIFAPNLKSIEVDSCYALEEIVSDVPEVMMGNLNPFAQFHFLCFSYLPNLKSIYRKP-LPFPHLKEMKVIHC 341 (386)
Q Consensus 268 ~~-----~l~~l~~L~~L~l~~c~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~-~~~~~L~~L~i~~c 341 (386)
.+ .....+.++.+++.++. +.+..... . ...+..+++|++|+++++ .+..++... ..+++|+.|+++++
T Consensus 237 ~~~~~l~~~~~~~~l~~l~L~~~~-l~~~~l~~--l-~~~l~~l~~L~~L~Ls~N-~l~~i~~~~~~~l~~L~~L~L~~N 311 (353)
T 2z80_A 237 FHFSELSTGETNSLIKKFTFRNVK-ITDESLFQ--V-MKLLNQISGLLELEFSRN-QLKSVPDGIFDRLTSLQKIWLHTN 311 (353)
T ss_dssp CCCC------CCCCCCEEEEESCB-CCHHHHHH--H-HHHHHTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS
T ss_pred ccccccccccccchhhcccccccc-ccCcchhh--h-HHHHhcccCCCEEECCCC-CCCccCHHHHhcCCCCCEEEeeCC
Confidence 32 23346778888888854 43321100 0 014567889999999999 777887664 67899999999886
Q ss_pred c
Q 040192 342 L 342 (386)
Q Consensus 342 ~ 342 (386)
+
T Consensus 312 ~ 312 (353)
T 2z80_A 312 P 312 (353)
T ss_dssp C
T ss_pred C
Confidence 4
No 26
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.91 E-value=2e-23 Score=211.86 Aligned_cols=298 Identities=19% Similarity=0.173 Sum_probs=157.8
Q ss_pred ccEEEEcCCCCCCC-C-cccccccCccEEEecCCcccccCCCCCCCCCcEEecccCcCCCcCChhhhcCCCcCceecccC
Q 040192 33 EEHLVYAGAGLSET-P-DVRKWEKNVRRLSLMENQIENLSEVPTCPYLRTLFLNNNAPLRRIDSGFFQSMPRLNVLNLSG 110 (386)
Q Consensus 33 ~~~l~~~~~~l~~~-p-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~ 110 (386)
.+.+.+.+..+.+. | .+..++ +|++|++++|.+.+..+...+++|++|++++|...+.+|..+...+++|++|++++
T Consensus 225 L~~L~Ls~n~l~~~~~~~l~~l~-~L~~L~Ls~n~l~~~~~~~~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~ 303 (768)
T 3rgz_A 225 LQHLDISGNKLSGDFSRAISTCT-ELKLLNISSNQFVGPIPPLPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSG 303 (768)
T ss_dssp CCEEECCSSCCCSCHHHHTTTCS-SCCEEECCSSCCEESCCCCCCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCS
T ss_pred CCEEECcCCcCCCcccHHHhcCC-CCCEEECCCCcccCccCccccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcC
Confidence 55566666555532 2 245555 66666666666554222225555555555555222244444223335555555555
Q ss_pred Ccccc-ccchhhcCCCccCEEEcCCCCCC-cccHh-hhccCCCCEEEccCCccccccchhhhcC----------------
Q 040192 111 AIRLY-SFPLGISKLISLQHLDLSNTGIA-ELPKE-LNALVNLTCLNLEETWRLTVIPRRLISS---------------- 171 (386)
Q Consensus 111 ~~~~~-~~~~~~~~l~~L~~L~l~~~~i~-~l~~~-~~~l~~L~~L~l~~~~~~~~~~~~~l~~---------------- 171 (386)
| .+. .+|..++.+++|++|++++|.+. .+|.. ++.+++|+.|++++|...+.+|.. +..
T Consensus 304 n-~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~-l~~l~~~L~~L~Ls~N~l~ 381 (768)
T 3rgz_A 304 N-HFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPES-LTNLSASLLTLDLSSNNFS 381 (768)
T ss_dssp S-EEEECCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTT-HHHHTTTCSEEECCSSEEE
T ss_pred C-cCCCccchHHhcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCccCccccHH-HHhhhcCCcEEEccCCCcC
Confidence 5 333 33455555555555555555554 44433 455555555555555333344443 333
Q ss_pred -----------CCCCcEEEEeccCCccc--cCCCcCccccccc-ceeecCCccccccccccCCcEEEeeccCCccchhcc
Q 040192 172 -----------FSSLHVLRIFGSGYSYS--DGMIGNGEFEQLC-GFRRSKSLDVSALADLKRLNRLKIAECYGLAELKMD 237 (386)
Q Consensus 172 -----------l~~L~~L~l~~~~~~~~--~~~~~l~~L~~L~-~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~ 237 (386)
+++|++|++++|.+.+. ..+..+++|+.|. ..+...+..+..+..+++|+.|++++|......+ .
T Consensus 382 ~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p-~ 460 (768)
T 3rgz_A 382 GPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIP-Q 460 (768)
T ss_dssp EECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCC-G
T ss_pred CCcChhhhhcccCCccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCC-H
Confidence 34455555544444322 1233344444444 3333344445556666666666666665443222 2
Q ss_pred cccccccCccccccCcccEEEecCCCCCCcc-ccccCCCCCcEEeecCCCccchhhccCcccccCCCCcccccceeeecc
Q 040192 238 YKSVVQNTGQSFVFHSLKKFQISYCKELKDL-TFLIFAPNLKSIEVDSCYALEEIVSDVPEVMMGNLNPFAQFHFLCFSY 316 (386)
Q Consensus 238 ~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~-~~l~~l~~L~~L~l~~c~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~ 316 (386)
.+. .+++|+.|++++|.....+ ..++.+++|+.|++++|. +..... ..+..+++|++|++++
T Consensus 461 ~~~---------~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~-l~~~~p-------~~~~~l~~L~~L~L~~ 523 (768)
T 3rgz_A 461 ELM---------YVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNR-LTGEIP-------KWIGRLENLAILKLSN 523 (768)
T ss_dssp GGG---------GCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSC-CCSCCC-------GGGGGCTTCCEEECCS
T ss_pred HHc---------CCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCc-cCCcCC-------hHHhcCCCCCEEECCC
Confidence 222 5677777777777433233 346667777777777755 433222 1556677777777777
Q ss_pred ccccccccCCCcCCCCccEEeecCcccCcCCCCCc
Q 040192 317 LPNLKSIYRKPLPFPHLKEMKVIHCLKLKKLPLDS 351 (386)
Q Consensus 317 ~~~l~~~~~~~~~~~~L~~L~i~~c~~L~~l~~~~ 351 (386)
|.....++.....+++|+.|++++|+--..+|...
T Consensus 524 N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~ 558 (768)
T 3rgz_A 524 NSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAM 558 (768)
T ss_dssp SCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGG
T ss_pred CcccCcCCHHHcCCCCCCEEECCCCccCCcCChHH
Confidence 74444666666677777777777765444566543
No 27
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.91 E-value=1.1e-22 Score=186.26 Aligned_cols=289 Identities=16% Similarity=0.155 Sum_probs=181.9
Q ss_pred ccEEEEcCCCCCCCCcccccccCccEEEecCCcccccCC--CCCCCCCcEEecccCcCCCcCChhhhcCCCcCceecccC
Q 040192 33 EEHLVYAGAGLSETPDVRKWEKNVRRLSLMENQIENLSE--VPTCPYLRTLFLNNNAPLRRIDSGFFQSMPRLNVLNLSG 110 (386)
Q Consensus 33 ~~~l~~~~~~l~~~p~~~~~~~~L~~L~l~~~~~~~~~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~ 110 (386)
...+.+.+.++..+|... .+ +++.|++++|.+..++. ...+++|++|++++| .+..+++..++.+++|++|++++
T Consensus 35 l~~l~~~~~~l~~ip~~~-~~-~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~ 111 (332)
T 2ft3_A 35 LRVVQCSDLGLKAVPKEI-SP-DTTLLDLQNNDISELRKDDFKGLQHLYALVLVNN-KISKIHEKAFSPLRKLQKLYISK 111 (332)
T ss_dssp TTEEECCSSCCSSCCSCC-CT-TCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS-CCCEECGGGSTTCTTCCEEECCS
T ss_pred CCEEECCCCCccccCCCC-CC-CCeEEECCCCcCCccCHhHhhCCCCCcEEECCCC-ccCccCHhHhhCcCCCCEEECCC
Confidence 566777877887777522 23 78888888888887644 378888888888888 67766555578888888888888
Q ss_pred CccccccchhhcCCCccCEEEcCCCCCCcccH-hhhccCCCCEEEccCCcccc-ccchhhhcCCCCCcEEEEeccCCccc
Q 040192 111 AIRLYSFPLGISKLISLQHLDLSNTGIAELPK-ELNALVNLTCLNLEETWRLT-VIPRRLISSFSSLHVLRIFGSGYSYS 188 (386)
Q Consensus 111 ~~~~~~~~~~~~~l~~L~~L~l~~~~i~~l~~-~~~~l~~L~~L~l~~~~~~~-~~~~~~l~~l~~L~~L~l~~~~~~~~ 188 (386)
| .+..+|..+. ++|++|++++|.++.++. .+..+++|+.|++++|.... ......+..+ +|+.|++++|.+...
T Consensus 112 n-~l~~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~~l 187 (332)
T 2ft3_A 112 N-HLVEIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLTGI 187 (332)
T ss_dssp S-CCCSCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCSSC
T ss_pred C-cCCccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCCCcc
Confidence 8 7777766544 788888888888887764 46778888888888884421 1223335666 888888888877765
Q ss_pred cCCCcCccccccc-ceeecCCccccccccccCCcEEEeeccCCccchhcccccccccCccccccCcccEEEecCCCCCCc
Q 040192 189 DGMIGNGEFEQLC-GFRRSKSLDVSALADLKRLNRLKIAECYGLAELKMDYKSVVQNTGQSFVFHSLKKFQISYCKELKD 267 (386)
Q Consensus 189 ~~~~~l~~L~~L~-~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~ 267 (386)
.. ...+.|+.|. ..+.+.+..+..+..+++|+.|++++|+... .....+. .+++|+.|++++| .++.
T Consensus 188 ~~-~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~-~~~~~~~---------~l~~L~~L~L~~N-~l~~ 255 (332)
T 2ft3_A 188 PK-DLPETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRM-IENGSLS---------FLPTLRELHLDNN-KLSR 255 (332)
T ss_dssp CS-SSCSSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCC-CCTTGGG---------GCTTCCEEECCSS-CCCB
T ss_pred Cc-cccCCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCc-CChhHhh---------CCCCCCEEECCCC-cCee
Confidence 22 1224555555 3333444444566667777777777775543 3333333 5677777777777 4555
Q ss_pred cc-cccCCCCCcEEeecCCCccchhhccCcccccCCCCcccccceeeecccccc--ccccCCCcCCCCccEEeecCcc
Q 040192 268 LT-FLIFAPNLKSIEVDSCYALEEIVSDVPEVMMGNLNPFAQFHFLCFSYLPNL--KSIYRKPLPFPHLKEMKVIHCL 342 (386)
Q Consensus 268 ~~-~l~~l~~L~~L~l~~c~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l--~~~~~~~~~~~~L~~L~i~~c~ 342 (386)
++ .+..+++|+.|+++++. ++.++....... .....+++|+.|++++++.. ...+.....+++|+.++++++.
T Consensus 256 lp~~l~~l~~L~~L~l~~N~-l~~~~~~~~~~~-~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 256 VPAGLPDLKLLQVVYLHTNN-ITKVGVNDFCPV-GFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK 331 (332)
T ss_dssp CCTTGGGCTTCCEEECCSSC-CCBCCTTSSSCS-SCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC----
T ss_pred cChhhhcCccCCEEECCCCC-CCccChhHcccc-ccccccccccceEeecCcccccccCcccccccchhhhhhccccc
Confidence 43 36667777777777743 665544311110 01112466777777777532 1122234446677777776653
No 28
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.90 E-value=5.3e-22 Score=181.46 Aligned_cols=241 Identities=19% Similarity=0.219 Sum_probs=161.4
Q ss_pred ccEEEEcCCCCCCCCcccccccCccEEEecCCcccccCC--CCCCCCCcEEecccCcCCCcCChhhhcCCCcCceecccC
Q 040192 33 EEHLVYAGAGLSETPDVRKWEKNVRRLSLMENQIENLSE--VPTCPYLRTLFLNNNAPLRRIDSGFFQSMPRLNVLNLSG 110 (386)
Q Consensus 33 ~~~l~~~~~~l~~~p~~~~~~~~L~~L~l~~~~~~~~~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~ 110 (386)
...+.+.+.++..+|.. ++++++.|++++|.+.+++. ...+++|++|++++| .+..+.+..++.+++|++|++++
T Consensus 33 l~~l~~~~~~l~~lp~~--~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~Ls~ 109 (330)
T 1xku_A 33 LRVVQCSDLGLEKVPKD--LPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINN-KISKISPGAFAPLVKLERLYLSK 109 (330)
T ss_dssp TTEEECTTSCCCSCCCS--CCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSS-CCCCBCTTTTTTCTTCCEEECCS
T ss_pred CeEEEecCCCccccCcc--CCCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCC-cCCeeCHHHhcCCCCCCEEECCC
Confidence 56788888888888752 22389999999999999765 388999999999999 77777555588999999999999
Q ss_pred CccccccchhhcCCCccCEEEcCCCCCCcccH-hhhccCCCCEEEccCCcccc-ccchhhhcCCCCCcEEEEeccCCccc
Q 040192 111 AIRLYSFPLGISKLISLQHLDLSNTGIAELPK-ELNALVNLTCLNLEETWRLT-VIPRRLISSFSSLHVLRIFGSGYSYS 188 (386)
Q Consensus 111 ~~~~~~~~~~~~~l~~L~~L~l~~~~i~~l~~-~~~~l~~L~~L~l~~~~~~~-~~~~~~l~~l~~L~~L~l~~~~~~~~ 188 (386)
| .+..+|..+. ++|++|++++|.++.++. .+..+++|+.|++++|.... ......+..+++|+.|++++|.+...
T Consensus 110 n-~l~~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~l 186 (330)
T 1xku_A 110 N-QLKELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTI 186 (330)
T ss_dssp S-CCSBCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCSC
T ss_pred C-cCCccChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCccccC
Confidence 9 8888876554 789999999999997764 57889999999999995432 13333488999999999999988765
Q ss_pred cCCCcCccccccc-ceeecCCccccccccccCCcEEEeeccCCccchhcccccccccCccccccCcccEEEecCCCCCCc
Q 040192 189 DGMIGNGEFEQLC-GFRRSKSLDVSALADLKRLNRLKIAECYGLAELKMDYKSVVQNTGQSFVFHSLKKFQISYCKELKD 267 (386)
Q Consensus 189 ~~~~~l~~L~~L~-~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~ 267 (386)
.. ...+.|+.|. ..+.+.+..+..+..+++|+.|++++|.... .....+. .+++|+.|++++| .++.
T Consensus 187 ~~-~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~-~~~~~~~---------~l~~L~~L~L~~N-~l~~ 254 (330)
T 1xku_A 187 PQ-GLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISA-VDNGSLA---------NTPHLRELHLNNN-KLVK 254 (330)
T ss_dssp CS-SCCTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCE-ECTTTGG---------GSTTCCEEECCSS-CCSS
T ss_pred Cc-cccccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCce-eChhhcc---------CCCCCCEEECCCC-cCcc
Confidence 21 1113444443 2222222333445555555555555554332 2222222 4555555555555 3333
Q ss_pred cc-cccCCCCCcEEeecCCCccchhh
Q 040192 268 LT-FLIFAPNLKSIEVDSCYALEEIV 292 (386)
Q Consensus 268 ~~-~l~~l~~L~~L~l~~c~~~~~~~ 292 (386)
++ .+..+++|+.|++++|. ++.++
T Consensus 255 lp~~l~~l~~L~~L~l~~N~-i~~~~ 279 (330)
T 1xku_A 255 VPGGLADHKYIQVVYLHNNN-ISAIG 279 (330)
T ss_dssp CCTTTTTCSSCCEEECCSSC-CCCCC
T ss_pred CChhhccCCCcCEEECCCCc-CCccC
Confidence 32 34455555555555533 44443
No 29
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.90 E-value=4.1e-23 Score=209.55 Aligned_cols=264 Identities=16% Similarity=0.096 Sum_probs=162.5
Q ss_pred CCCCcEEecccCcCCC-cCChhhhcCCCcCceecccCCcccc-ccchhhcCCCccCEEEcCCCCCC-cccHhhhccCCCC
Q 040192 75 CPYLRTLFLNNNAPLR-RIDSGFFQSMPRLNVLNLSGAIRLY-SFPLGISKLISLQHLDLSNTGIA-ELPKELNALVNLT 151 (386)
Q Consensus 75 ~~~L~~L~l~~~~~~~-~~~~~~~~~l~~L~~L~l~~~~~~~-~~~~~~~~l~~L~~L~l~~~~i~-~l~~~~~~l~~L~ 151 (386)
+++|+.|++++| .+. .+|.. +..+++|++|++++| .+. .+|..++.+++|+.|++++|.+. .+|..++.+++|+
T Consensus 393 ~~~L~~L~L~~n-~l~~~~p~~-l~~l~~L~~L~Ls~N-~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~ 469 (768)
T 3rgz_A 393 KNTLQELYLQNN-GFTGKIPPT-LSNCSELVSLHLSFN-YLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLE 469 (768)
T ss_dssp TCCCCEEECCSS-EEEEECCGG-GGGCTTCCEEECCSS-EEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCC
T ss_pred cCCccEEECCCC-ccccccCHH-HhcCCCCCEEECcCC-cccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCce
Confidence 445555555555 333 33333 566677777777776 554 44666667777777777777766 5666677777777
Q ss_pred EEEccCCccccccchhhhcCCCCCcEEEEeccCCccc--cCCCcCccccccc-ceeecCCccccccccccCCcEEEeecc
Q 040192 152 CLNLEETWRLTVIPRRLISSFSSLHVLRIFGSGYSYS--DGMIGNGEFEQLC-GFRRSKSLDVSALADLKRLNRLKIAEC 228 (386)
Q Consensus 152 ~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~--~~~~~l~~L~~L~-~~~~~~~~~~~~l~~~~~L~~L~l~~~ 228 (386)
.|++++|...+.+|.. +..+++|+.|++++|.+.+. ..+..++.|+.|. ..+...+..+..+..+++|+.|++++|
T Consensus 470 ~L~L~~N~l~~~~p~~-l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N 548 (768)
T 3rgz_A 470 TLILDFNDLTGEIPSG-LSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTN 548 (768)
T ss_dssp EEECCSSCCCSCCCGG-GGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSS
T ss_pred EEEecCCcccCcCCHH-HhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCC
Confidence 7777777555556654 67777777777777776643 2344555555555 344445555667777778888888777
Q ss_pred CCccchhccccccc------------------------------------------------------------ccCccc
Q 040192 229 YGLAELKMDYKSVV------------------------------------------------------------QNTGQS 248 (386)
Q Consensus 229 ~~~~~~~~~~~~~~------------------------------------------------------------~~~~~~ 248 (386)
+....++..++... ..+...
T Consensus 549 ~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~ 628 (768)
T 3rgz_A 549 LFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTF 628 (768)
T ss_dssp EEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSC
T ss_pred ccCCcCChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhccccccccccccceecccCchhh
Confidence 65433322211100 000001
Q ss_pred cccCcccEEEecCCCCCCcc-ccccCCCCCcEEeecCCCccchhhccCcccccCCCCcccccceeeeccccccccccCCC
Q 040192 249 FVFHSLKKFQISYCKELKDL-TFLIFAPNLKSIEVDSCYALEEIVSDVPEVMMGNLNPFAQFHFLCFSYLPNLKSIYRKP 327 (386)
Q Consensus 249 ~~~~~L~~L~l~~~~~l~~~-~~l~~l~~L~~L~l~~c~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~ 327 (386)
..+++|+.|++++|.....+ ..++.+++|+.|+|++|. ++..++ ..++.+++|++|+|+++.--..+|...
T Consensus 629 ~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~-l~g~ip-------~~l~~L~~L~~LdLs~N~l~g~ip~~l 700 (768)
T 3rgz_A 629 DNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHND-ISGSIP-------DEVGDLRGLNILDLSSNKLDGRIPQAM 700 (768)
T ss_dssp SSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSC-CCSCCC-------GGGGGCTTCCEEECCSSCCEECCCGGG
T ss_pred hccccccEEECcCCcccccCCHHHhccccCCEEeCcCCc-cCCCCC-------hHHhCCCCCCEEECCCCcccCcCChHH
Confidence 13567788888887433333 346778888888888855 443333 266777888888888884444677777
Q ss_pred cCCCCccEEeecCcccCcCCCCC
Q 040192 328 LPFPHLKEMKVIHCLKLKKLPLD 350 (386)
Q Consensus 328 ~~~~~L~~L~i~~c~~L~~l~~~ 350 (386)
..+++|+.|++++++--..+|..
T Consensus 701 ~~l~~L~~L~ls~N~l~g~iP~~ 723 (768)
T 3rgz_A 701 SALTMLTEIDLSNNNLSGPIPEM 723 (768)
T ss_dssp GGCCCCSEEECCSSEEEEECCSS
T ss_pred hCCCCCCEEECcCCcccccCCCc
Confidence 77888888888886443446654
No 30
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.90 E-value=1.1e-22 Score=193.95 Aligned_cols=261 Identities=18% Similarity=0.167 Sum_probs=204.7
Q ss_pred CcccccccCccEEEecCCcccccCCCCCCCCCcEEecccCcCCCcCChhhhcCCCcCceecccCCccccccchhhcCCCc
Q 040192 47 PDVRKWEKNVRRLSLMENQIENLSEVPTCPYLRTLFLNNNAPLRRIDSGFFQSMPRLNVLNLSGAIRLYSFPLGISKLIS 126 (386)
Q Consensus 47 p~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~ 126 (386)
+.+..++ ++++|++++|.+.++|....+++|++|++++| .+..++ ++.+++|++|++++| .+..++ ++.+++
T Consensus 36 ~~~~~l~-~L~~L~Ls~n~l~~~~~l~~l~~L~~L~Ls~n-~l~~~~---~~~l~~L~~L~Ls~N-~l~~~~--~~~l~~ 107 (457)
T 3bz5_A 36 ISEEQLA-TLTSLDCHNSSITDMTGIEKLTGLTKLICTSN-NITTLD---LSQNTNLTYLACDSN-KLTNLD--VTPLTK 107 (457)
T ss_dssp EEHHHHT-TCCEEECCSSCCCCCTTGGGCTTCSEEECCSS-CCSCCC---CTTCTTCSEEECCSS-CCSCCC--CTTCTT
T ss_pred cChhHcC-CCCEEEccCCCcccChhhcccCCCCEEEccCC-cCCeEc---cccCCCCCEEECcCC-CCceee--cCCCCc
Confidence 4577788 99999999999999987799999999999999 777775 689999999999999 888775 789999
Q ss_pred cCEEEcCCCCCCcccHhhhccCCCCEEEccCCccccccchhhhcCCCCCcEEEEeccCCccccCCCcCccccccc-ceee
Q 040192 127 LQHLDLSNTGIAELPKELNALVNLTCLNLEETWRLTVIPRRLISSFSSLHVLRIFGSGYSYSDGMIGNGEFEQLC-GFRR 205 (386)
Q Consensus 127 L~~L~l~~~~i~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~L~-~~~~ 205 (386)
|++|++++|.++.++ ++.+++|+.|++++| .+..++ ++.+++|+.|++++|...+.-.+..++.|+.|. ..+.
T Consensus 108 L~~L~L~~N~l~~l~--~~~l~~L~~L~l~~N-~l~~l~---l~~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~ls~n~ 181 (457)
T 3bz5_A 108 LTYLNCDTNKLTKLD--VSQNPLLTYLNCARN-TLTEID---VSHNTQLTELDCHLNKKITKLDVTPQTQLTTLDCSFNK 181 (457)
T ss_dssp CCEEECCSSCCSCCC--CTTCTTCCEEECTTS-CCSCCC---CTTCTTCCEEECTTCSCCCCCCCTTCTTCCEEECCSSC
T ss_pred CCEEECCCCcCCeec--CCCCCcCCEEECCCC-ccceec---cccCCcCCEEECCCCCcccccccccCCcCCEEECCCCc
Confidence 999999999999886 889999999999999 455553 789999999999999554443566677777776 3344
Q ss_pred cCCccccccccccCCcEEEeeccCCccchhcccccccccCccccccCcccEEEecCCCCCCccccccCCCCCcEEeecCC
Q 040192 206 SKSLDVSALADLKRLNRLKIAECYGLAELKMDYKSVVQNTGQSFVFHSLKKFQISYCKELKDLTFLIFAPNLKSIEVDSC 285 (386)
Q Consensus 206 ~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~l~~l~~L~~L~l~~c 285 (386)
+.+. .+..+++|+.|++++|+... . .+. .+++|+.|++++| .++.++ ++.+++|+.|+++++
T Consensus 182 l~~l---~l~~l~~L~~L~l~~N~l~~-~---~l~---------~l~~L~~L~Ls~N-~l~~ip-~~~l~~L~~L~l~~N 243 (457)
T 3bz5_A 182 ITEL---DVSQNKLLNRLNCDTNNITK-L---DLN---------QNIQLTFLDCSSN-KLTEID-VTPLTQLTYFDCSVN 243 (457)
T ss_dssp CCCC---CCTTCTTCCEEECCSSCCSC-C---CCT---------TCTTCSEEECCSS-CCSCCC-CTTCTTCSEEECCSS
T ss_pred ccee---ccccCCCCCEEECcCCcCCe-e---ccc---------cCCCCCEEECcCC-cccccC-ccccCCCCEEEeeCC
Confidence 4442 27788999999999997654 2 233 7899999999999 577776 888999999999996
Q ss_pred CccchhhccCcccccCCCCccc-------ccceeeeccccccccccCCCcCCCCccEEeecCcccCcCCCC
Q 040192 286 YALEEIVSDVPEVMMGNLNPFA-------QFHFLCFSYLPNLKSIYRKPLPFPHLKEMKVIHCLKLKKLPL 349 (386)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~-------~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~i~~c~~L~~l~~ 349 (386)
. ++.++. ..+..+. +|+.|++++|..+..++ ...+++|+.|++++|+.++.+|.
T Consensus 244 ~-l~~~~~-------~~l~~L~~L~l~~n~L~~L~l~~n~~~~~~~--~~~l~~L~~L~Ls~n~~l~~l~~ 304 (457)
T 3bz5_A 244 P-LTELDV-------STLSKLTTLHCIQTDLLEIDLTHNTQLIYFQ--AEGCRKIKELDVTHNTQLYLLDC 304 (457)
T ss_dssp C-CSCCCC-------TTCTTCCEEECTTCCCSCCCCTTCTTCCEEE--CTTCTTCCCCCCTTCTTCCEEEC
T ss_pred c-CCCcCH-------HHCCCCCEEeccCCCCCEEECCCCccCCccc--ccccccCCEEECCCCcccceecc
Confidence 5 666533 1222222 55666777776566665 34578888888888876555554
No 31
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.90 E-value=1.3e-22 Score=192.86 Aligned_cols=240 Identities=24% Similarity=0.285 Sum_probs=192.6
Q ss_pred ccEEEEcCCCCCCCCcccccccCccEEEecCCcccccCCC--CCCCCCcEEecccCcCCCcCChhhhcCCCcCceecccC
Q 040192 33 EEHLVYAGAGLSETPDVRKWEKNVRRLSLMENQIENLSEV--PTCPYLRTLFLNNNAPLRRIDSGFFQSMPRLNVLNLSG 110 (386)
Q Consensus 33 ~~~l~~~~~~l~~~p~~~~~~~~L~~L~l~~~~~~~~~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~ 110 (386)
...+.+.+.++..+|.. ++++++.|++++|.+..++.. ..+++|++|++++| .+..+++..+.++++|++|++++
T Consensus 45 ~~~v~c~~~~l~~iP~~--~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n-~i~~i~~~~~~~l~~L~~L~L~~ 121 (440)
T 3zyj_A 45 FSKVICVRKNLREVPDG--ISTNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRN-HIRTIEIGAFNGLANLNTLELFD 121 (440)
T ss_dssp SCEEECCSCCCSSCCSC--CCTTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSS-CCCEECGGGGTTCSSCCEEECCS
T ss_pred CCEEEeCCCCcCcCCCC--CCCCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCC-cCCccChhhccCCccCCEEECCC
Confidence 45788999999999862 233899999999999986543 89999999999999 88888877799999999999999
Q ss_pred Cccccccch-hhcCCCccCEEEcCCCCCCcccH-hhhccCCCCEEEccCCccccccchhhhcCCCCCcEEEEeccCCccc
Q 040192 111 AIRLYSFPL-GISKLISLQHLDLSNTGIAELPK-ELNALVNLTCLNLEETWRLTVIPRRLISSFSSLHVLRIFGSGYSYS 188 (386)
Q Consensus 111 ~~~~~~~~~-~~~~l~~L~~L~l~~~~i~~l~~-~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~ 188 (386)
| .+..++. .+..+++|++|++++|.++.++. .+..+++|+.|++++|..+..++...+..+++|+.|++++|.+...
T Consensus 122 n-~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~ 200 (440)
T 3zyj_A 122 N-RLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREI 200 (440)
T ss_dssp S-CCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSSC
T ss_pred C-cCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCccc
Confidence 9 8888864 68899999999999999998775 6788999999999998788888887799999999999999988765
Q ss_pred cCCCcCcccccccceeecCCccccccccccCCcEEEeeccCCccchhcccccccccCccccccCcccEEEecCCCCCCcc
Q 040192 189 DGMIGNGEFEQLCGFRRSKSLDVSALADLKRLNRLKIAECYGLAELKMDYKSVVQNTGQSFVFHSLKKFQISYCKELKDL 268 (386)
Q Consensus 189 ~~~~~l~~L~~L~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~ 268 (386)
. .+..+++|+.|++++|+... .....+. .+++|+.|++++| .++.+
T Consensus 201 ~-----------------------~~~~l~~L~~L~Ls~N~l~~-~~~~~~~---------~l~~L~~L~L~~n-~l~~~ 246 (440)
T 3zyj_A 201 P-----------------------NLTPLIKLDELDLSGNHLSA-IRPGSFQ---------GLMHLQKLWMIQS-QIQVI 246 (440)
T ss_dssp C-----------------------CCTTCSSCCEEECTTSCCCE-ECTTTTT---------TCTTCCEEECTTC-CCCEE
T ss_pred c-----------------------ccCCCcccCEEECCCCccCc-cChhhhc---------cCccCCEEECCCC-ceeEE
Confidence 2 24456778888888885544 3334444 6788888888888 45554
Q ss_pred c--cccCCCCCcEEeecCCCccchhhccCcccccCCCCcccccceeeecccc
Q 040192 269 T--FLIFAPNLKSIEVDSCYALEEIVSDVPEVMMGNLNPFAQFHFLCFSYLP 318 (386)
Q Consensus 269 ~--~l~~l~~L~~L~l~~c~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 318 (386)
+ .+..+++|+.|+|++| .++.++. ..+..+++|+.|+|++++
T Consensus 247 ~~~~~~~l~~L~~L~L~~N-~l~~~~~-------~~~~~l~~L~~L~L~~Np 290 (440)
T 3zyj_A 247 ERNAFDNLQSLVEINLAHN-NLTLLPH-------DLFTPLHHLERIHLHHNP 290 (440)
T ss_dssp CTTSSTTCTTCCEEECTTS-CCCCCCT-------TTTSSCTTCCEEECCSSC
T ss_pred ChhhhcCCCCCCEEECCCC-CCCccCh-------hHhccccCCCEEEcCCCC
Confidence 2 3567788888888885 4666655 366777888888888754
No 32
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.90 E-value=1.4e-22 Score=198.91 Aligned_cols=123 Identities=24% Similarity=0.340 Sum_probs=81.9
Q ss_pred ccEEEEcCCCCCCCC--cccccccCccEEEecCCcccccCCC--CCCCCCcEEecccCcCCCcCChhhhcCCCcCceecc
Q 040192 33 EEHLVYAGAGLSETP--DVRKWEKNVRRLSLMENQIENLSEV--PTCPYLRTLFLNNNAPLRRIDSGFFQSMPRLNVLNL 108 (386)
Q Consensus 33 ~~~l~~~~~~l~~~p--~~~~~~~~L~~L~l~~~~~~~~~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l 108 (386)
...+++.+..+.+++ ++..++ +|++|++++|.+.+++.. ..+++|++|++++| .+..+++..++++++|++|++
T Consensus 30 l~~L~Ls~n~l~~~~~~~~~~l~-~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L 107 (570)
T 2z63_A 30 TKNLDLSFNPLRHLGSYSFFSFP-ELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGN-PIQSLALGAFSGLSSLQKLVA 107 (570)
T ss_dssp CCEEECCSCCCCEECTTTTTTCS-SCCEEECTTCCCCEECTTTTTTCTTCCEEECTTC-CCCEECTTTTTTCTTCCEEEC
T ss_pred ccEEEccCCccCccChhHhhCCC-CceEEECCCCcCCccCcccccCchhCCEEeCcCC-cCCccCHhhhcCccccccccc
Confidence 556666666666554 356666 777777777777765432 66777777777777 566665555667777777777
Q ss_pred cCCccccccch-hhcCCCccCEEEcCCCCCCc--ccHhhhccCCCCEEEccCC
Q 040192 109 SGAIRLYSFPL-GISKLISLQHLDLSNTGIAE--LPKELNALVNLTCLNLEET 158 (386)
Q Consensus 109 ~~~~~~~~~~~-~~~~l~~L~~L~l~~~~i~~--l~~~~~~l~~L~~L~l~~~ 158 (386)
++| .+..++. .++++++|++|++++|.+.. +|..++.+++|++|++++|
T Consensus 108 ~~n-~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n 159 (570)
T 2z63_A 108 VET-NLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSN 159 (570)
T ss_dssp TTS-CCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTS
T ss_pred ccc-ccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCC
Confidence 776 6665543 46677777777777776663 5666677777777777666
No 33
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.90 E-value=1.3e-22 Score=193.50 Aligned_cols=240 Identities=24% Similarity=0.268 Sum_probs=189.4
Q ss_pred ccEEEEcCCCCCCCCcccccccCccEEEecCCcccccCCC--CCCCCCcEEecccCcCCCcCChhhhcCCCcCceecccC
Q 040192 33 EEHLVYAGAGLSETPDVRKWEKNVRRLSLMENQIENLSEV--PTCPYLRTLFLNNNAPLRRIDSGFFQSMPRLNVLNLSG 110 (386)
Q Consensus 33 ~~~l~~~~~~l~~~p~~~~~~~~L~~L~l~~~~~~~~~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~ 110 (386)
...+.+.+.++..+|. .++++++.|++++|.+..++.. ..+++|+.|++++| .+..+++..+.++++|++|++++
T Consensus 56 ~~~v~c~~~~l~~iP~--~~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n-~i~~~~~~~~~~l~~L~~L~L~~ 132 (452)
T 3zyi_A 56 FSKVVCTRRGLSEVPQ--GIPSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRN-SIRQIEVGAFNGLASLNTLELFD 132 (452)
T ss_dssp SCEEECCSSCCSSCCS--CCCTTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCS
T ss_pred CcEEEECCCCcCccCC--CCCCCccEEECcCCcCceECHHHcCCCCCCCEEECCCC-ccCCcChhhccCcccCCEEECCC
Confidence 4578899999999985 2334899999999999986443 89999999999999 88888777689999999999999
Q ss_pred Cccccccch-hhcCCCccCEEEcCCCCCCcccH-hhhccCCCCEEEccCCccccccchhhhcCCCCCcEEEEeccCCccc
Q 040192 111 AIRLYSFPL-GISKLISLQHLDLSNTGIAELPK-ELNALVNLTCLNLEETWRLTVIPRRLISSFSSLHVLRIFGSGYSYS 188 (386)
Q Consensus 111 ~~~~~~~~~-~~~~l~~L~~L~l~~~~i~~l~~-~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~ 188 (386)
| .+..++. .+..+++|++|++++|.++.++. .+..+++|+.|++++|..+..++...+..+++|+.|++++|.+...
T Consensus 133 n-~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~ 211 (452)
T 3zyi_A 133 N-WLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDM 211 (452)
T ss_dssp S-CCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSC
T ss_pred C-cCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCccccc
Confidence 9 8887754 57889999999999999998875 6788999999999998788888887789999999999999988765
Q ss_pred cCCCcCcccccccceeecCCccccccccccCCcEEEeeccCCccchhcccccccccCccccccCcccEEEecCCCCCCcc
Q 040192 189 DGMIGNGEFEQLCGFRRSKSLDVSALADLKRLNRLKIAECYGLAELKMDYKSVVQNTGQSFVFHSLKKFQISYCKELKDL 268 (386)
Q Consensus 189 ~~~~~l~~L~~L~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~ 268 (386)
. .+..+++|+.|++++|.... .....+. .+++|+.|++++| .++.+
T Consensus 212 ~-----------------------~~~~l~~L~~L~Ls~N~l~~-~~~~~~~---------~l~~L~~L~L~~n-~l~~~ 257 (452)
T 3zyi_A 212 P-----------------------NLTPLVGLEELEMSGNHFPE-IRPGSFH---------GLSSLKKLWVMNS-QVSLI 257 (452)
T ss_dssp C-----------------------CCTTCTTCCEEECTTSCCSE-ECGGGGT---------TCTTCCEEECTTS-CCCEE
T ss_pred c-----------------------cccccccccEEECcCCcCcc-cCccccc---------CccCCCEEEeCCC-cCceE
Confidence 2 23456778888888776554 3334443 6778888888877 45543
Q ss_pred --ccccCCCCCcEEeecCCCccchhhccCcccccCCCCcccccceeeecccc
Q 040192 269 --TFLIFAPNLKSIEVDSCYALEEIVSDVPEVMMGNLNPFAQFHFLCFSYLP 318 (386)
Q Consensus 269 --~~l~~l~~L~~L~l~~c~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 318 (386)
..+..+++|+.|+|++| .++.++. ..+..+++|++|+|++++
T Consensus 258 ~~~~~~~l~~L~~L~L~~N-~l~~~~~-------~~~~~l~~L~~L~L~~Np 301 (452)
T 3zyi_A 258 ERNAFDGLASLVELNLAHN-NLSSLPH-------DLFTPLRYLVELHLHHNP 301 (452)
T ss_dssp CTTTTTTCTTCCEEECCSS-CCSCCCT-------TSSTTCTTCCEEECCSSC
T ss_pred CHHHhcCCCCCCEEECCCC-cCCccCh-------HHhccccCCCEEEccCCC
Confidence 23566788888888875 4666555 256677788888887754
No 34
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.90 E-value=3.1e-22 Score=198.02 Aligned_cols=124 Identities=20% Similarity=0.187 Sum_probs=83.4
Q ss_pred cccEEEEcCCCCCCC-C-cccccccCccEEEecCCcccccCC-C-CCCCCCcEEecccCcCCCcCChhhhcCCCcCceec
Q 040192 32 KEEHLVYAGAGLSET-P-DVRKWEKNVRRLSLMENQIENLSE-V-PTCPYLRTLFLNNNAPLRRIDSGFFQSMPRLNVLN 107 (386)
Q Consensus 32 ~~~~l~~~~~~l~~~-p-~~~~~~~~L~~L~l~~~~~~~~~~-~-~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~ 107 (386)
..+.+.+.+..+.++ | .+..++ +|++|++++|.+..+++ . ..+++|++|++++| .+..+++..++.+++|++|+
T Consensus 58 ~L~~L~Ls~n~i~~~~~~~~~~l~-~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n-~i~~l~~~~~~~l~~L~~L~ 135 (606)
T 3t6q_A 58 NLTFLDLTRCQIYWIHEDTFQSQH-RLDTLVLTANPLIFMAETALSGPKALKHLFFIQT-GISSIDFIPLHNQKTLESLY 135 (606)
T ss_dssp TCSEEECTTCCCCEECTTTTTTCT-TCCEEECTTCCCSEECTTTTSSCTTCCEEECTTS-CCSCGGGSCCTTCTTCCEEE
T ss_pred cceEEECCCCccceeChhhccCcc-ccCeeeCCCCcccccChhhhcccccccEeecccc-CcccCCcchhccCCcccEEE
Confidence 367777777777665 3 266777 88888888887777433 2 77788888888887 66665444467777888888
Q ss_pred ccCCcccccc-chhhcCCCccCEEEcCCCCCCccc-HhhhccCCCC--EEEccCC
Q 040192 108 LSGAIRLYSF-PLGISKLISLQHLDLSNTGIAELP-KELNALVNLT--CLNLEET 158 (386)
Q Consensus 108 l~~~~~~~~~-~~~~~~l~~L~~L~l~~~~i~~l~-~~~~~l~~L~--~L~l~~~ 158 (386)
+++| .+..+ .+.+..+++|++|++++|.++.++ ..++.+++|+ .|++++|
T Consensus 136 L~~n-~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~L~l~~n 189 (606)
T 3t6q_A 136 LGSN-HISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGN 189 (606)
T ss_dssp CCSS-CCCCCCCCTTCCCTTCCEEECCSSCCCEECHHHHHTTTTCCSEEEECTTC
T ss_pred CCCC-cccccCcccccCCcccCEEEcccCcccccChhhhhhhcccceeEEecCCC
Confidence 8777 66654 233444777777777777777553 4456666666 5566555
No 35
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.90 E-value=8.7e-23 Score=186.35 Aligned_cols=240 Identities=21% Similarity=0.246 Sum_probs=194.3
Q ss_pred CCCcCceecccCCccccccchhhcCCCccCEEEcCCCCCCcccHhhhccCCCCEEEccCCccccccchhhhcCCCCCcEE
Q 040192 99 SMPRLNVLNLSGAIRLYSFPLGISKLISLQHLDLSNTGIAELPKELNALVNLTCLNLEETWRLTVIPRRLISSFSSLHVL 178 (386)
Q Consensus 99 ~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L 178 (386)
....+++|+++++ .+..+|..+..+++|++|++++|.++.+|..++.+++|++|++++| .+..+|.. ++.+++|++|
T Consensus 79 ~~~~l~~L~L~~n-~l~~lp~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n-~l~~lp~~-l~~l~~L~~L 155 (328)
T 4fcg_A 79 TQPGRVALELRSV-PLPQFPDQAFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARN-PLRALPAS-IASLNRLREL 155 (328)
T ss_dssp TSTTCCEEEEESS-CCSSCCSCGGGGTTCSEEEEESSCCCCCCSCGGGGTTCSEEEEESC-CCCCCCGG-GGGCTTCCEE
T ss_pred cccceeEEEccCC-CchhcChhhhhCCCCCEEECCCCCccchhHHHhccCCCCEEECCCC-ccccCcHH-HhcCcCCCEE
Confidence 4588999999999 8899998899999999999999999999998999999999999999 45588876 9999999999
Q ss_pred EEeccCCccccCCCcCcccccccceeecCCccccccccccCCcEEEeeccCCccchhcccccccccCccccccCcccEEE
Q 040192 179 RIFGSGYSYSDGMIGNGEFEQLCGFRRSKSLDVSALADLKRLNRLKIAECYGLAELKMDYKSVVQNTGQSFVFHSLKKFQ 258 (386)
Q Consensus 179 ~l~~~~~~~~~~~~~l~~L~~L~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ 258 (386)
++++|...+.. ...+... .....+..+++|++|++++|+.. .++ ..+. .+++|+.|+
T Consensus 156 ~L~~n~~~~~~-p~~~~~~-----------~~~~~~~~l~~L~~L~L~~n~l~-~lp-~~l~---------~l~~L~~L~ 212 (328)
T 4fcg_A 156 SIRACPELTEL-PEPLAST-----------DASGEHQGLVNLQSLRLEWTGIR-SLP-ASIA---------NLQNLKSLK 212 (328)
T ss_dssp EEEEETTCCCC-CSCSEEE-----------C-CCCEEESTTCCEEEEEEECCC-CCC-GGGG---------GCTTCCEEE
T ss_pred ECCCCCCcccc-ChhHhhc-----------cchhhhccCCCCCEEECcCCCcC-cch-Hhhc---------CCCCCCEEE
Confidence 99998766541 1111110 01233566899999999999765 343 3343 789999999
Q ss_pred ecCCCCCCcc-ccccCCCCCcEEeecCCCccchhhccCcccccCCCCcccccceeeeccccccccccCCCcCCCCccEEe
Q 040192 259 ISYCKELKDL-TFLIFAPNLKSIEVDSCYALEEIVSDVPEVMMGNLNPFAQFHFLCFSYLPNLKSIYRKPLPFPHLKEMK 337 (386)
Q Consensus 259 l~~~~~l~~~-~~l~~l~~L~~L~l~~c~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~ 337 (386)
+++|. ++.+ +.++.+++|+.|++++|.....++. .+..+++|++|++++|..+..++.....+++|+.|+
T Consensus 213 L~~N~-l~~l~~~l~~l~~L~~L~Ls~n~~~~~~p~--------~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~ 283 (328)
T 4fcg_A 213 IRNSP-LSALGPAIHHLPKLEELDLRGCTALRNYPP--------IFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLD 283 (328)
T ss_dssp EESSC-CCCCCGGGGGCTTCCEEECTTCTTCCBCCC--------CTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEE
T ss_pred ccCCC-CCcCchhhccCCCCCEEECcCCcchhhhHH--------HhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEe
Confidence 99995 5554 4578899999999999886665543 678899999999999988888988888999999999
Q ss_pred ecCcccCcCCCCCcccccCcceEEEchHHHHhhhhcc
Q 040192 338 VIHCLKLKKLPLDSNRAKERKIVIRGSRERWEQLQWE 374 (386)
Q Consensus 338 i~~c~~L~~l~~~~~~~~~~l~i~~~~~~~~~~~~~~ 374 (386)
+++|+.+..+|.....+ ..+.++..+......+.+.
T Consensus 284 L~~n~~~~~iP~~l~~L-~~L~~l~l~~~~~~~l~~~ 319 (328)
T 4fcg_A 284 LRGCVNLSRLPSLIAQL-PANCIILVPPHLQAQLDQH 319 (328)
T ss_dssp CTTCTTCCCCCGGGGGS-CTTCEEECCGGGSCC----
T ss_pred CCCCCchhhccHHHhhc-cCceEEeCCHHHHHHHhhh
Confidence 99999999999887777 7789999997777666554
No 36
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.90 E-value=8.8e-23 Score=206.99 Aligned_cols=300 Identities=13% Similarity=0.166 Sum_probs=218.2
Q ss_pred cccEEEEcCCCCC-CCCc-ccccccCccEEEecCCc-ccc--cCCC--------CCCCCCcEEecccCcCCCcCCh-hhh
Q 040192 32 KEEHLVYAGAGLS-ETPD-VRKWEKNVRRLSLMENQ-IEN--LSEV--------PTCPYLRTLFLNNNAPLRRIDS-GFF 97 (386)
Q Consensus 32 ~~~~l~~~~~~l~-~~p~-~~~~~~~L~~L~l~~~~-~~~--~~~~--------~~~~~L~~L~l~~~~~~~~~~~-~~~ 97 (386)
....+.+.+..+. .+|. +..++ +|+.|++++|. +++ +|.. ..+++|+.|++++| .+..+|. ..+
T Consensus 492 ~L~~L~Ls~N~l~~~iP~~l~~L~-~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N-~L~~ip~~~~l 569 (876)
T 4ecn_A 492 DLTDVELYNCPNMTQLPDFLYDLP-ELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYN-NLEEFPASASL 569 (876)
T ss_dssp TCCEEEEESCTTCCSCCGGGGGCS-SCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSS-CCCBCCCHHHH
T ss_pred CCCEEECcCCCCCccChHHHhCCC-CCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCC-cCCccCChhhh
Confidence 4778888877643 4564 77888 99999999997 765 5542 34569999999998 6778887 237
Q ss_pred cCCCcCceecccCCccccccchhhcCCCccCEEEcCCCCCCcccHhhhccCC-CCEEEccCCccccccchhhhcCCC--C
Q 040192 98 QSMPRLNVLNLSGAIRLYSFPLGISKLISLQHLDLSNTGIAELPKELNALVN-LTCLNLEETWRLTVIPRRLISSFS--S 174 (386)
Q Consensus 98 ~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~l~~~~~~l~~-L~~L~l~~~~~~~~~~~~~l~~l~--~ 174 (386)
+.+++|++|++++| .+..+| .++.+++|+.|++++|.++.+|..+..+++ |+.|++++|. +..+|.. +..+. +
T Consensus 570 ~~L~~L~~L~Ls~N-~l~~lp-~~~~L~~L~~L~Ls~N~l~~lp~~l~~l~~~L~~L~Ls~N~-L~~lp~~-~~~~~~~~ 645 (876)
T 4ecn_A 570 QKMVKLGLLDCVHN-KVRHLE-AFGTNVKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNK-LKYIPNI-FNAKSVYV 645 (876)
T ss_dssp TTCTTCCEEECTTS-CCCBCC-CCCTTSEESEEECCSSCCSCCCTTSCEECTTCCEEECCSSC-CCSCCSC-CCTTCSSC
T ss_pred hcCCCCCEEECCCC-Ccccch-hhcCCCcceEEECcCCccccchHHHhhccccCCEEECcCCC-CCcCchh-hhccccCC
Confidence 89999999999998 777778 788899999999999999888888888888 9999999994 5577764 55554 4
Q ss_pred CcEEEEeccCCccc-cCC----C--cCccccccc-ceeecCCccccccccccCCcEEEeeccCCccchhcccccccc-cC
Q 040192 175 LHVLRIFGSGYSYS-DGM----I--GNGEFEQLC-GFRRSKSLDVSALADLKRLNRLKIAECYGLAELKMDYKSVVQ-NT 245 (386)
Q Consensus 175 L~~L~l~~~~~~~~-~~~----~--~l~~L~~L~-~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~-~~ 245 (386)
|+.|++++|.+.+. ..+ . .+.+|+.|. ..+.+.......+..+++|+.|++++|+.. .++...+.... ..
T Consensus 646 L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~~~~~~~l 724 (876)
T 4ecn_A 646 MGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMT-SIPENSLKPKDGNY 724 (876)
T ss_dssp EEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCCCS-CCCTTSSSCTTSCC
T ss_pred CCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCCccCHHHHccCCCCCEEECCCCcCC-ccChHHhccccccc
Confidence 99999999988664 111 1 223566665 333333322333446889999999998665 34444332100 00
Q ss_pred ccccccCcccEEEecCCCCCCcccc-cc--CCCCCcEEeecCCCccchhhccCcccccCCCCcccccceeeecc------
Q 040192 246 GQSFVFHSLKKFQISYCKELKDLTF-LI--FAPNLKSIEVDSCYALEEIVSDVPEVMMGNLNPFAQFHFLCFSY------ 316 (386)
Q Consensus 246 ~~~~~~~~L~~L~l~~~~~l~~~~~-l~--~l~~L~~L~l~~c~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~------ 316 (386)
+ .+++|+.|+|++| .++.++. +. .+++|+.|+|++|. ++.++. .+..+++|+.|+|++
T Consensus 725 ~---nl~~L~~L~Ls~N-~L~~lp~~l~~~~l~~L~~L~Ls~N~-L~~lp~--------~l~~L~~L~~L~Ls~N~~ls~ 791 (876)
T 4ecn_A 725 K---NTYLLTTIDLRFN-KLTSLSDDFRATTLPYLSNMDVSYNC-FSSFPT--------QPLNSSQLKAFGIRHQRDAEG 791 (876)
T ss_dssp T---TGGGCCEEECCSS-CCCCCCGGGSTTTCTTCCEEECCSSC-CSSCCC--------GGGGCTTCCEEECCCCBCTTC
T ss_pred c---ccCCccEEECCCC-CCccchHHhhhccCCCcCEEEeCCCC-CCccch--------hhhcCCCCCEEECCCCCCccc
Confidence 0 2449999999999 5666654 44 79999999999965 666533 567889999999987
Q ss_pred ccccccccCCCcCCCCccEEeecCcccCcCCCCCcc
Q 040192 317 LPNLKSIYRKPLPFPHLKEMKVIHCLKLKKLPLDSN 352 (386)
Q Consensus 317 ~~~l~~~~~~~~~~~~L~~L~i~~c~~L~~l~~~~~ 352 (386)
+.....++.....+++|+.|++++| ++..+|....
T Consensus 792 N~l~~~ip~~l~~L~~L~~L~Ls~N-~L~~Ip~~l~ 826 (876)
T 4ecn_A 792 NRILRQWPTGITTCPSLIQLQIGSN-DIRKVDEKLT 826 (876)
T ss_dssp CBCCCCCCTTGGGCSSCCEEECCSS-CCCBCCSCCC
T ss_pred ccccccChHHHhcCCCCCEEECCCC-CCCccCHhhc
Confidence 4334566767778999999999996 5688988754
No 37
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.90 E-value=7.1e-23 Score=202.64 Aligned_cols=269 Identities=19% Similarity=0.156 Sum_probs=170.7
Q ss_pred CCcccccccCccEEEecCCcccccCCCCCCCCCcEEecccCcCCCcCChhhhcCCCcCceecccCCccccccchhhcCCC
Q 040192 46 TPDVRKWEKNVRRLSLMENQIENLSEVPTCPYLRTLFLNNNAPLRRIDSGFFQSMPRLNVLNLSGAIRLYSFPLGISKLI 125 (386)
Q Consensus 46 ~p~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~ 125 (386)
+|.+..++ +++.|+++++.+..++....+++|+.|++++| .++.+|. + .+++|++|++++|...... .+..++
T Consensus 278 ~~~~~~l~-~L~~L~l~~~~~~~l~~l~~~~~L~~L~l~~n-~l~~lp~--~-~l~~L~~L~l~~n~~~~~~--~~~~l~ 350 (606)
T 3vq2_A 278 IVKFHCLA-NVSAMSLAGVSIKYLEDVPKHFKWQSLSIIRC-QLKQFPT--L-DLPFLKSLTLTMNKGSISF--KKVALP 350 (606)
T ss_dssp GGSCGGGT-TCSEEEEESCCCCCCCCCCTTCCCSEEEEESC-CCSSCCC--C-CCSSCCEEEEESCSSCEEC--CCCCCT
T ss_pred ccccccCC-CCCEEEecCccchhhhhccccccCCEEEcccc-cCccccc--C-CCCccceeeccCCcCccch--hhccCC
Confidence 34566666 78888888888777776677788888888887 5566663 4 7788888888777333333 455777
Q ss_pred ccCEEEcCCCCCCcc---cHhhhccCCCCEEEccCCccccccchhhhcCCCCCcEEEEeccCCcccc---CCCcCccccc
Q 040192 126 SLQHLDLSNTGIAEL---PKELNALVNLTCLNLEETWRLTVIPRRLISSFSSLHVLRIFGSGYSYSD---GMIGNGEFEQ 199 (386)
Q Consensus 126 ~L~~L~l~~~~i~~l---~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~---~~~~l~~L~~ 199 (386)
+|++|++++|.++.. +..+..+++|+.|++++| .+..++.. +..+++|+.|++++|.+.... .+..++.|+.
T Consensus 351 ~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n-~l~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~ 428 (606)
T 3vq2_A 351 SLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFN-GAIIMSAN-FMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLY 428 (606)
T ss_dssp TCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSC-SEEEECCC-CTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCE
T ss_pred CCCEEECcCCccCCCcchhhhhccCCcccEeECCCC-ccccchhh-ccCCCCCCeeECCCCccCCccChhhhhccccCCE
Confidence 888888888877644 667777788888888877 34556643 777788888888877766541 2333344444
Q ss_pred cc-ceeecCCccccccccccCCcEEEeeccCCccchhcccccccccCccccccCcccEEEecCCCCCCcc--ccccCCCC
Q 040192 200 LC-GFRRSKSLDVSALADLKRLNRLKIAECYGLAELKMDYKSVVQNTGQSFVFHSLKKFQISYCKELKDL--TFLIFAPN 276 (386)
Q Consensus 200 L~-~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~--~~l~~l~~ 276 (386)
|. ..+...+..+..+..+++|++|++++|+......+..+. .+++|+.|++++| .++.. ..+..+++
T Consensus 429 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~---------~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~ 498 (606)
T 3vq2_A 429 LDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFA---------NTTNLTFLDLSKC-QLEQISWGVFDTLHR 498 (606)
T ss_dssp EECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCT---------TCTTCCEEECTTS-CCCEECTTTTTTCTT
T ss_pred EECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhc---------cCCCCCEEECCCC-cCCccChhhhccccc
Confidence 43 222222233445566677777777776554322233333 5677777777777 34433 23566777
Q ss_pred CcEEeecCCCccchhhccCcccccCCCCcccccceeeeccccccccccCCCcCCC-CccEEeecCcc
Q 040192 277 LKSIEVDSCYALEEIVSDVPEVMMGNLNPFAQFHFLCFSYLPNLKSIYRKPLPFP-HLKEMKVIHCL 342 (386)
Q Consensus 277 L~~L~l~~c~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~-~L~~L~i~~c~ 342 (386)
|++|++++|. ++.... ..+..+++|++|++++| .+..++.....++ +|+.|++++++
T Consensus 499 L~~L~Ls~N~-l~~~~~-------~~~~~l~~L~~L~l~~N-~l~~~p~~~~~l~~~L~~l~l~~N~ 556 (606)
T 3vq2_A 499 LQLLNMSHNN-LLFLDS-------SHYNQLYSLSTLDCSFN-RIETSKGILQHFPKSLAFFNLTNNS 556 (606)
T ss_dssp CCEEECCSSC-CSCEEG-------GGTTTCTTCCEEECTTS-CCCCEESCGGGSCTTCCEEECCSCC
T ss_pred CCEEECCCCc-CCCcCH-------HHccCCCcCCEEECCCC-cCcccCHhHhhhcccCcEEEccCCC
Confidence 7777777754 554433 25566677777777777 4666666555665 47777776643
No 38
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.90 E-value=1.9e-22 Score=195.96 Aligned_cols=121 Identities=23% Similarity=0.187 Sum_probs=87.1
Q ss_pred cccEEEEcCCCCCCCC--cccccccCccEEEecCCccccc-CCC-CCCCCCcEEecccCcCCCcCChhhhcCCCcCceec
Q 040192 32 KEEHLVYAGAGLSETP--DVRKWEKNVRRLSLMENQIENL-SEV-PTCPYLRTLFLNNNAPLRRIDSGFFQSMPRLNVLN 107 (386)
Q Consensus 32 ~~~~l~~~~~~l~~~p--~~~~~~~~L~~L~l~~~~~~~~-~~~-~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~ 107 (386)
....+++.+..+.+++ .+..++ +|++|++++|.+.++ |.. ..+++|++|++++| .+..+|.. .+++|++|+
T Consensus 22 ~L~~L~Ls~n~i~~~~~~~~~~l~-~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~lp~~---~l~~L~~L~ 96 (520)
T 2z7x_B 22 KTTILNISQNYISELWTSDILSLS-KLRILIISHNRIQYLDISVFKFNQELEYLDLSHN-KLVKISCH---PTVNLKHLD 96 (520)
T ss_dssp TCSEEECCSSCCCCCCHHHHTTCT-TCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSS-CCCEEECC---CCCCCSEEE
T ss_pred cccEEECCCCcccccChhhccccc-cccEEecCCCccCCcChHHhhcccCCCEEecCCC-ceeecCcc---ccCCccEEe
Confidence 4677888888887775 367777 888888888888875 333 77888888888888 66666654 688888888
Q ss_pred ccCCccccc--cchhhcCCCccCEEEcCCCCCCcccHhhhccCCC--CEEEccCCcc
Q 040192 108 LSGAIRLYS--FPLGISKLISLQHLDLSNTGIAELPKELNALVNL--TCLNLEETWR 160 (386)
Q Consensus 108 l~~~~~~~~--~~~~~~~l~~L~~L~l~~~~i~~l~~~~~~l~~L--~~L~l~~~~~ 160 (386)
+++| .+.. +|..++++++|++|++++|.++. ..+..+++| +.|++++|..
T Consensus 97 L~~N-~l~~~~~p~~~~~l~~L~~L~L~~n~l~~--~~~~~l~~L~L~~L~l~~n~l 150 (520)
T 2z7x_B 97 LSFN-AFDALPICKEFGNMSQLKFLGLSTTHLEK--SSVLPIAHLNISKVLLVLGET 150 (520)
T ss_dssp CCSS-CCSSCCCCGGGGGCTTCCEEEEEESSCCG--GGGGGGTTSCEEEEEEEECTT
T ss_pred ccCC-ccccccchhhhccCCcceEEEecCcccch--hhccccccceeeEEEeecccc
Confidence 8888 6664 46777888888888888887764 234555555 6666666533
No 39
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.90 E-value=1.8e-22 Score=197.33 Aligned_cols=153 Identities=20% Similarity=0.258 Sum_probs=118.0
Q ss_pred cccEEEEcCCCCCCCC--cccccccCccEEEecCCcccccCC--CCCCCCCcEEecccCcCCCcCChhhhcCCCcCceec
Q 040192 32 KEEHLVYAGAGLSETP--DVRKWEKNVRRLSLMENQIENLSE--VPTCPYLRTLFLNNNAPLRRIDSGFFQSMPRLNVLN 107 (386)
Q Consensus 32 ~~~~l~~~~~~l~~~p--~~~~~~~~L~~L~l~~~~~~~~~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~ 107 (386)
....+.+.+..+.+++ .+..++ +|++|++++|.+.+++. ...+++|++|++++| .+..+++..++.+++|++|+
T Consensus 27 ~L~~L~Ls~n~l~~~~~~~~~~l~-~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~ 104 (549)
T 2z81_A 27 AMKSLDLSFNKITYIGHGDLRACA-NLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDN-HLSSLSSSWFGPLSSLKYLN 104 (549)
T ss_dssp TCCEEECCSSCCCEECSSTTSSCT-TCCEEECTTSCCCEECTTTTTTCTTCCEEECTTS-CCCSCCHHHHTTCTTCCEEE
T ss_pred CccEEECcCCccCccChhhhhcCC-cccEEECCCCCcCccChhhccccccCCEEECCCC-ccCccCHHHhccCCCCcEEE
Confidence 5778888888888763 477888 99999999999998654 388999999999999 78888877788999999999
Q ss_pred ccCCccccc--cchhhcCCCccCEEEcCCCC-CCccc-HhhhccCCCCEEEccCCccccccchh----------------
Q 040192 108 LSGAIRLYS--FPLGISKLISLQHLDLSNTG-IAELP-KELNALVNLTCLNLEETWRLTVIPRR---------------- 167 (386)
Q Consensus 108 l~~~~~~~~--~~~~~~~l~~L~~L~l~~~~-i~~l~-~~~~~l~~L~~L~l~~~~~~~~~~~~---------------- 167 (386)
+++| .+.. .|..++++++|++|++++|. +..+| ..+..+++|++|++++|......|..
T Consensus 105 Ls~n-~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~ 183 (549)
T 2z81_A 105 LMGN-PYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSE 183 (549)
T ss_dssp CTTC-CCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSB
T ss_pred CCCC-cccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCceEecccCc
Confidence 9999 7764 35678889999999999887 56665 46778888888888887544333332
Q ss_pred -------hhcCCCCCcEEEEeccCCcc
Q 040192 168 -------LISSFSSLHVLRIFGSGYSY 187 (386)
Q Consensus 168 -------~l~~l~~L~~L~l~~~~~~~ 187 (386)
.+..+++|+.|++++|.+.+
T Consensus 184 ~~~~~~~~~~~l~~L~~L~L~~n~l~~ 210 (549)
T 2z81_A 184 SAFLLEIFADILSSVRYLELRDTNLAR 210 (549)
T ss_dssp STTHHHHHHHSTTTBSEEEEESCBCTT
T ss_pred ccccchhhHhhcccccEEEccCCcccc
Confidence 12345677777777776655
No 40
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.90 E-value=5.5e-22 Score=181.35 Aligned_cols=248 Identities=17% Similarity=0.245 Sum_probs=187.0
Q ss_pred CccEEEecCCcccccCCCCCCCCCcEEecccCcCCCcCChhhhcCCCcCceecccCCcccccc-chhhcCCCccCEEEcC
Q 040192 55 NVRRLSLMENQIENLSEVPTCPYLRTLFLNNNAPLRRIDSGFFQSMPRLNVLNLSGAIRLYSF-PLGISKLISLQHLDLS 133 (386)
Q Consensus 55 ~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~-~~~~~~l~~L~~L~l~ 133 (386)
+++.++++++.+..+|.. -.++++.|++++| .+..++...++.+++|++|++++| .+..+ |..++.+++|++|+++
T Consensus 32 ~l~~l~~~~~~l~~lp~~-~~~~l~~L~L~~n-~i~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~Ls 108 (330)
T 1xku_A 32 HLRVVQCSDLGLEKVPKD-LPPDTALLDLQNN-KITEIKDGDFKNLKNLHTLILINN-KISKISPGAFAPLVKLERLYLS 108 (330)
T ss_dssp ETTEEECTTSCCCSCCCS-CCTTCCEEECCSS-CCCCBCTTTTTTCTTCCEEECCSS-CCCCBCTTTTTTCTTCCEEECC
T ss_pred CCeEEEecCCCccccCcc-CCCCCeEEECCCC-cCCEeChhhhccCCCCCEEECCCC-cCCeeCHHHhcCCCCCCEEECC
Confidence 789999999999887764 2479999999999 788888766899999999999999 78776 7789999999999999
Q ss_pred CCCCCcccHhhhccCCCCEEEccCCccccccchhhhcCCCCCcEEEEeccCCccccCCCcCcccccccceeecCCccccc
Q 040192 134 NTGIAELPKELNALVNLTCLNLEETWRLTVIPRRLISSFSSLHVLRIFGSGYSYSDGMIGNGEFEQLCGFRRSKSLDVSA 213 (386)
Q Consensus 134 ~~~i~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~L~~~~~~~~~~~~~ 213 (386)
+|.++.+|..+. ++|+.|++++| .+..++...+..+++|+.|++++|.+.... .....
T Consensus 109 ~n~l~~l~~~~~--~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~-------------------~~~~~ 166 (330)
T 1xku_A 109 KNQLKELPEKMP--KTLQELRVHEN-EITKVRKSVFNGLNQMIVVELGTNPLKSSG-------------------IENGA 166 (330)
T ss_dssp SSCCSBCCSSCC--TTCCEEECCSS-CCCBBCHHHHTTCTTCCEEECCSSCCCGGG-------------------BCTTG
T ss_pred CCcCCccChhhc--ccccEEECCCC-cccccCHhHhcCCccccEEECCCCcCCccC-------------------cChhh
Confidence 999998886654 79999999999 566777666899999999999999876431 11234
Q ss_pred cccccCCcEEEeeccCCccchhcccccccccCccccccCcccEEEecCCCCCCcc--ccccCCCCCcEEeecCCCccchh
Q 040192 214 LADLKRLNRLKIAECYGLAELKMDYKSVVQNTGQSFVFHSLKKFQISYCKELKDL--TFLIFAPNLKSIEVDSCYALEEI 291 (386)
Q Consensus 214 l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~--~~l~~l~~L~~L~l~~c~~~~~~ 291 (386)
+..+++|+.|++++|.... ++ .. .+++|+.|++++| .++.+ ..+..+++|+.|++++|. ++.+
T Consensus 167 ~~~l~~L~~L~l~~n~l~~-l~-~~-----------~~~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~ 231 (330)
T 1xku_A 167 FQGMKKLSYIRIADTNITT-IP-QG-----------LPPSLTELHLDGN-KITKVDAASLKGLNNLAKLGLSFNS-ISAV 231 (330)
T ss_dssp GGGCTTCCEEECCSSCCCS-CC-SS-----------CCTTCSEEECTTS-CCCEECTGGGTTCTTCCEEECCSSC-CCEE
T ss_pred ccCCCCcCEEECCCCcccc-CC-cc-----------ccccCCEEECCCC-cCCccCHHHhcCCCCCCEEECCCCc-Ccee
Confidence 5566777778777775442 21 11 3467778888777 35543 346677778888887754 5555
Q ss_pred hccCcccccCCCCcccccceeeeccccccccccCCCcCCCCccEEeecCcccCcCCCCCc
Q 040192 292 VSDVPEVMMGNLNPFAQFHFLCFSYLPNLKSIYRKPLPFPHLKEMKVIHCLKLKKLPLDS 351 (386)
Q Consensus 292 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~i~~c~~L~~l~~~~ 351 (386)
.. ..+..+++|++|+++++ .+..++.....+++|+.|+++++ .++.++...
T Consensus 232 ~~-------~~~~~l~~L~~L~L~~N-~l~~lp~~l~~l~~L~~L~l~~N-~i~~~~~~~ 282 (330)
T 1xku_A 232 DN-------GSLANTPHLRELHLNNN-KLVKVPGGLADHKYIQVVYLHNN-NISAIGSND 282 (330)
T ss_dssp CT-------TTGGGSTTCCEEECCSS-CCSSCCTTTTTCSSCCEEECCSS-CCCCCCTTS
T ss_pred Ch-------hhccCCCCCCEEECCCC-cCccCChhhccCCCcCEEECCCC-cCCccChhh
Confidence 43 25666777888888777 56677666667777888888774 577766543
No 41
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.90 E-value=3.4e-22 Score=196.24 Aligned_cols=151 Identities=24% Similarity=0.305 Sum_probs=128.4
Q ss_pred cccEEEEcCCCCCCCCcccccccCccEEEecCCcccccCCC--CCCCCCcEEecccCcCCCcCChhhhcCCCcCceeccc
Q 040192 32 KEEHLVYAGAGLSETPDVRKWEKNVRRLSLMENQIENLSEV--PTCPYLRTLFLNNNAPLRRIDSGFFQSMPRLNVLNLS 109 (386)
Q Consensus 32 ~~~~l~~~~~~l~~~p~~~~~~~~L~~L~l~~~~~~~~~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~ 109 (386)
....+.|.+.++..+|. .+++++++|++++|.+..++.. ..+++|++|++++| .+..+++..++++++|++|+++
T Consensus 8 ~~~~~~c~~~~l~~ip~--~l~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n-~i~~i~~~~~~~l~~L~~L~L~ 84 (570)
T 2z63_A 8 PNITYQCMELNFYKIPD--NLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRC-EIQTIEDGAYQSLSHLSTLILT 84 (570)
T ss_dssp TTTEEECCSSCCSSCCS--SSCSSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTC-CCCEECTTTTTTCTTCCEEECT
T ss_pred CCcEEEeCCCCccccCC--CccccccEEEccCCccCccChhHhhCCCCceEEECCCC-cCCccCcccccCchhCCEEeCc
Confidence 35678899999999986 3344899999999999986543 89999999999999 7888877778999999999999
Q ss_pred CCccccccc-hhhcCCCccCEEEcCCCCCCcccH-hhhccCCCCEEEccCCcccc-ccchhhhcCCCCCcEEEEeccCCc
Q 040192 110 GAIRLYSFP-LGISKLISLQHLDLSNTGIAELPK-ELNALVNLTCLNLEETWRLT-VIPRRLISSFSSLHVLRIFGSGYS 186 (386)
Q Consensus 110 ~~~~~~~~~-~~~~~l~~L~~L~l~~~~i~~l~~-~~~~l~~L~~L~l~~~~~~~-~~~~~~l~~l~~L~~L~l~~~~~~ 186 (386)
+| .+..++ ..++.+++|++|++++|.++.++. .++.+++|++|++++|.... .+|.. ++++++|++|++++|.+.
T Consensus 85 ~n-~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~-~~~l~~L~~L~l~~n~l~ 162 (570)
T 2z63_A 85 GN-PIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEY-FSNLTNLEHLDLSSNKIQ 162 (570)
T ss_dssp TC-CCCEECTTTTTTCTTCCEEECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGG-GGGCTTCCEEECTTSCCC
T ss_pred CC-cCCccCHhhhcCccccccccccccccccCCCccccccccccEEecCCCccceecChhh-hcccCCCCEEeCcCCccc
Confidence 99 787764 688999999999999999998875 58899999999999995443 35665 899999999999988765
Q ss_pred c
Q 040192 187 Y 187 (386)
Q Consensus 187 ~ 187 (386)
.
T Consensus 163 ~ 163 (570)
T 2z63_A 163 S 163 (570)
T ss_dssp E
T ss_pred e
Confidence 4
No 42
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.89 E-value=6.2e-22 Score=194.10 Aligned_cols=121 Identities=25% Similarity=0.287 Sum_probs=101.2
Q ss_pred cccEEEEcCCCCCCCC--cccccccCccEEEecCCcccccCC--CCCCCCCcEEecccCcCCCcCChhhhcCCCcCceec
Q 040192 32 KEEHLVYAGAGLSETP--DVRKWEKNVRRLSLMENQIENLSE--VPTCPYLRTLFLNNNAPLRRIDSGFFQSMPRLNVLN 107 (386)
Q Consensus 32 ~~~~l~~~~~~l~~~p--~~~~~~~~L~~L~l~~~~~~~~~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~ 107 (386)
....+.+.+..+.+++ .+..++ +|++|++++|.+.+++. ...+++|++|++++| .+..+|.. .+++|++|+
T Consensus 53 ~L~~L~Ls~N~i~~~~~~~~~~l~-~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~lp~~---~l~~L~~L~ 127 (562)
T 3a79_B 53 RTKALSLSQNSISELRMPDISFLS-ELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHN-RLQNISCC---PMASLRHLD 127 (562)
T ss_dssp TCCEEECCSSCCCCCCGGGTTTCT-TCCEEECCSCCCCEECTTTTTTCTTCCEEECTTS-CCCEECSC---CCTTCSEEE
T ss_pred CcCEEECCCCCccccChhhhccCC-CccEEECCCCCCCcCCHHHhCCCCCCCEEECCCC-cCCccCcc---ccccCCEEE
Confidence 5778999999999886 488888 99999999999999643 388999999999999 78888875 899999999
Q ss_pred ccCCcccccc--chhhcCCCccCEEEcCCCCCCcccHhhhccCCC--CEEEccCCcc
Q 040192 108 LSGAIRLYSF--PLGISKLISLQHLDLSNTGIAELPKELNALVNL--TCLNLEETWR 160 (386)
Q Consensus 108 l~~~~~~~~~--~~~~~~l~~L~~L~l~~~~i~~l~~~~~~l~~L--~~L~l~~~~~ 160 (386)
+++| .+..+ |..++++++|++|++++|.++.. .+..+++| +.|++++|..
T Consensus 128 Ls~N-~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~--~~~~l~~L~L~~L~L~~n~l 181 (562)
T 3a79_B 128 LSFN-DFDVLPVCKEFGNLTKLTFLGLSAAKFRQL--DLLPVAHLHLSCILLDLVSY 181 (562)
T ss_dssp CCSS-CCSBCCCCGGGGGCTTCCEEEEECSBCCTT--TTGGGTTSCEEEEEEEESSC
T ss_pred CCCC-CccccCchHhhcccCcccEEecCCCccccC--chhhhhhceeeEEEeecccc
Confidence 9999 78765 47899999999999999988753 34455555 8888887744
No 43
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.89 E-value=1.1e-21 Score=196.68 Aligned_cols=150 Identities=21% Similarity=0.232 Sum_probs=95.6
Q ss_pred cEEEEcCCCCCCCCcccccccCccEEEecCCcccccCCC--CCCCCCcEEecccCcCCCcCChhhhcCCCcCceecccCC
Q 040192 34 EHLVYAGAGLSETPDVRKWEKNVRRLSLMENQIENLSEV--PTCPYLRTLFLNNNAPLRRIDSGFFQSMPRLNVLNLSGA 111 (386)
Q Consensus 34 ~~l~~~~~~l~~~p~~~~~~~~L~~L~l~~~~~~~~~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~ 111 (386)
..+++.+.++..+|.. +++++++|++++|.+..++.. ..+++|++|++++| .+..+++..++++++|++|++++|
T Consensus 7 ~~~~cs~~~L~~ip~~--~~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~L~~n 83 (680)
T 1ziw_A 7 EVADCSHLKLTQVPDD--LPTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFN-TISKLEPELCQKLPMLKVLNLQHN 83 (680)
T ss_dssp SEEECCSSCCSSCCSC--SCTTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSS-CCCCCCTTHHHHCTTCCEEECCSS
T ss_pred CeeECCCCCccccccc--cCCCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCC-ccCccCHHHHhcccCcCEEECCCC
Confidence 4566666667666642 223677777777777765542 66777777777776 555555555667777777777777
Q ss_pred ccccccch-hhcCCCccCEEEcCCCCCCccc-HhhhccCCCCEEEccCCccccccchhhhcCCCCCcEEEEeccCCccc
Q 040192 112 IRLYSFPL-GISKLISLQHLDLSNTGIAELP-KELNALVNLTCLNLEETWRLTVIPRRLISSFSSLHVLRIFGSGYSYS 188 (386)
Q Consensus 112 ~~~~~~~~-~~~~l~~L~~L~l~~~~i~~l~-~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~ 188 (386)
.+..+|. .++++++|++|++++|.++.++ ..++.+++|++|++++|... ..+...+..+++|++|++++|.+...
T Consensus 84 -~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~ 160 (680)
T 1ziw_A 84 -ELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLS-STKLGTQVQLENLQELLLSNNKIQAL 160 (680)
T ss_dssp -CCCCCCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCS-CCCCCSSSCCTTCCEEECCSSCCCCB
T ss_pred -ccCccChhhhccCCCCCEEECCCCccCccChhHccccCCCCEEECCCCccc-ccCchhhcccccCCEEEccCCccccc
Confidence 6666654 4667777777777777776655 35666777777777777433 33322366677777777777665544
No 44
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.89 E-value=3.4e-22 Score=180.80 Aligned_cols=241 Identities=20% Similarity=0.260 Sum_probs=181.3
Q ss_pred ccEEEEcCCCCCCCCcccccccCccEEEecCCcccccCCC--CCCCCCcEEecccCcCCCcC---ChhhhcCCCcCceec
Q 040192 33 EEHLVYAGAGLSETPDVRKWEKNVRRLSLMENQIENLSEV--PTCPYLRTLFLNNNAPLRRI---DSGFFQSMPRLNVLN 107 (386)
Q Consensus 33 ~~~l~~~~~~l~~~p~~~~~~~~L~~L~l~~~~~~~~~~~--~~~~~L~~L~l~~~~~~~~~---~~~~~~~l~~L~~L~ 107 (386)
...+.+.+.++..+|. .+++++++|++++|.+..++.. ..+++|+.|++++| .+... +.. +..+++|++|+
T Consensus 9 ~~~l~c~~~~l~~ip~--~~~~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~-~~~~~~L~~L~ 84 (306)
T 2z66_A 9 GTEIRCNSKGLTSVPT--GIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSN-GLSFKGCCSQS-DFGTTSLKYLD 84 (306)
T ss_dssp TTEEECCSSCCSSCCS--CCCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSS-CCCEEEEEEHH-HHSCSCCCEEE
T ss_pred CCEEEcCCCCcccCCC--CCCCCCCEEECCCCccCccCHhHhhccccCCEEECCCC-ccCcccCcccc-cccccccCEEE
Confidence 3467888888988886 2223899999999999987764 78999999999998 66544 334 56799999999
Q ss_pred ccCCccccccchhhcCCCccCEEEcCCCCCCcccH--hhhccCCCCEEEccCCccccccchhhhcCCCCCcEEEEeccCC
Q 040192 108 LSGAIRLYSFPLGISKLISLQHLDLSNTGIAELPK--ELNALVNLTCLNLEETWRLTVIPRRLISSFSSLHVLRIFGSGY 185 (386)
Q Consensus 108 l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~l~~--~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~ 185 (386)
+++| .+..+|..+..+++|++|++++|.++.++. .+..+++|+.|++++|.. ...+...+..+++|++|++++|.+
T Consensus 85 Ls~n-~i~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l-~~~~~~~~~~l~~L~~L~l~~n~l 162 (306)
T 2z66_A 85 LSFN-GVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHT-RVAFNGIFNGLSSLEVLKMAGNSF 162 (306)
T ss_dssp CCSC-SEEEEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCC-EECSTTTTTTCTTCCEEECTTCEE
T ss_pred CCCC-ccccChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcC-CccchhhcccCcCCCEEECCCCcc
Confidence 9999 888888788899999999999998887763 678889999999999944 444444488889999999998877
Q ss_pred ccccCCCcCcccccccceeecCCccccccccccCCcEEEeeccCCccchhcccccccccCccccccCcccEEEecCCCCC
Q 040192 186 SYSDGMIGNGEFEQLCGFRRSKSLDVSALADLKRLNRLKIAECYGLAELKMDYKSVVQNTGQSFVFHSLKKFQISYCKEL 265 (386)
Q Consensus 186 ~~~~~~~~l~~L~~L~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l 265 (386)
.+. ..+..+..+++|+.|++++|+... .....+. .+++|+.|++++| .+
T Consensus 163 ~~~--------------------~~~~~~~~l~~L~~L~Ls~n~l~~-~~~~~~~---------~l~~L~~L~L~~N-~l 211 (306)
T 2z66_A 163 QEN--------------------FLPDIFTELRNLTFLDLSQCQLEQ-LSPTAFN---------SLSSLQVLNMSHN-NF 211 (306)
T ss_dssp GGG--------------------EECSCCTTCTTCCEEECTTSCCCE-ECTTTTT---------TCTTCCEEECTTS-CC
T ss_pred ccc--------------------cchhHHhhCcCCCEEECCCCCcCC-cCHHHhc---------CCCCCCEEECCCC-cc
Confidence 652 012345667888999998886554 3334443 6788999999888 45
Q ss_pred Cccc--cccCCCCCcEEeecCCCccchhhccCcccccCCCCccc-ccceeeecccc
Q 040192 266 KDLT--FLIFAPNLKSIEVDSCYALEEIVSDVPEVMMGNLNPFA-QFHFLCFSYLP 318 (386)
Q Consensus 266 ~~~~--~l~~l~~L~~L~l~~c~~~~~~~~~~~~~~~~~~~~~~-~L~~L~l~~~~ 318 (386)
+.++ .+..+++|+.|++++|. +..... ..+..++ +|++|++++++
T Consensus 212 ~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~-------~~~~~~~~~L~~L~L~~N~ 259 (306)
T 2z66_A 212 FSLDTFPYKCLNSLQVLDYSLNH-IMTSKK-------QELQHFPSSLAFLNLTQND 259 (306)
T ss_dssp SBCCSGGGTTCTTCCEEECTTSC-CCBCSS-------SSCCCCCTTCCEEECTTCC
T ss_pred CccChhhccCcccCCEeECCCCC-CcccCH-------HHHHhhhccCCEEEccCCC
Confidence 5543 36678888888888865 555444 2555664 88888888874
No 45
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.89 E-value=2.7e-22 Score=181.39 Aligned_cols=244 Identities=18% Similarity=0.187 Sum_probs=193.2
Q ss_pred ccEEEecCCcccccCCCCCCCCCcEEecccCcCCCcCChhhhcCCCcCceecccCCcccccc---chhhcCCCccCEEEc
Q 040192 56 VRRLSLMENQIENLSEVPTCPYLRTLFLNNNAPLRRIDSGFFQSMPRLNVLNLSGAIRLYSF---PLGISKLISLQHLDL 132 (386)
Q Consensus 56 L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~---~~~~~~l~~L~~L~l 132 (386)
-+.++.+++.+..+|.. -.++|+.|++++| .+..++..+++.+++|++|++++| .+... +..+..+++|++|++
T Consensus 9 ~~~l~c~~~~l~~ip~~-~~~~l~~L~L~~n-~l~~i~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~~~~~~L~~L~L 85 (306)
T 2z66_A 9 GTEIRCNSKGLTSVPTG-IPSSATRLELESN-KLQSLPHGVFDKLTQLTKLSLSSN-GLSFKGCCSQSDFGTTSLKYLDL 85 (306)
T ss_dssp TTEEECCSSCCSSCCSC-CCTTCCEEECCSS-CCCCCCTTTTTTCTTCSEEECCSS-CCCEEEEEEHHHHSCSCCCEEEC
T ss_pred CCEEEcCCCCcccCCCC-CCCCCCEEECCCC-ccCccCHhHhhccccCCEEECCCC-ccCcccCcccccccccccCEEEC
Confidence 35788888888887763 3479999999999 788888887899999999999999 77644 567778999999999
Q ss_pred CCCCCCcccHhhhccCCCCEEEccCCccccccch-hhhcCCCCCcEEEEeccCCccccCCCcCcccccccceeecCCccc
Q 040192 133 SNTGIAELPKELNALVNLTCLNLEETWRLTVIPR-RLISSFSSLHVLRIFGSGYSYSDGMIGNGEFEQLCGFRRSKSLDV 211 (386)
Q Consensus 133 ~~~~i~~l~~~~~~l~~L~~L~l~~~~~~~~~~~-~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~L~~~~~~~~~~~ 211 (386)
++|.+..+|..+..+++|+.|++++| .+..++. ..+..+++|+.|++++|.+... .+
T Consensus 86 s~n~i~~l~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~---------------------~~ 143 (306)
T 2z66_A 86 SFNGVITMSSNFLGLEQLEHLDFQHS-NLKQMSEFSVFLSLRNLIYLDISHTHTRVA---------------------FN 143 (306)
T ss_dssp CSCSEEEEEEEEETCTTCCEEECTTS-EEESSTTTTTTTTCTTCCEEECTTSCCEEC---------------------ST
T ss_pred CCCccccChhhcCCCCCCCEEECCCC-cccccccchhhhhccCCCEEECCCCcCCcc---------------------ch
Confidence 99999999888889999999999999 4455543 4488999999999999877654 12
Q ss_pred cccccccCCcEEEeeccCCccchhcccccccccCccccccCcccEEEecCCCCCCcc--ccccCCCCCcEEeecCCCccc
Q 040192 212 SALADLKRLNRLKIAECYGLAELKMDYKSVVQNTGQSFVFHSLKKFQISYCKELKDL--TFLIFAPNLKSIEVDSCYALE 289 (386)
Q Consensus 212 ~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~--~~l~~l~~L~~L~l~~c~~~~ 289 (386)
..+..+++|++|++++|.......+..+. .+++|+.|++++| .++.+ ..+..+++|+.|++++|. ++
T Consensus 144 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~---------~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~L~~N~-l~ 212 (306)
T 2z66_A 144 GIFNGLSSLEVLKMAGNSFQENFLPDIFT---------ELRNLTFLDLSQC-QLEQLSPTAFNSLSSLQVLNMSHNN-FF 212 (306)
T ss_dssp TTTTTCTTCCEEECTTCEEGGGEECSCCT---------TCTTCCEEECTTS-CCCEECTTTTTTCTTCCEEECTTSC-CS
T ss_pred hhcccCcCCCEEECCCCccccccchhHHh---------hCcCCCEEECCCC-CcCCcCHHHhcCCCCCCEEECCCCc-cC
Confidence 34566789999999998765423334444 7899999999999 56654 357889999999999965 66
Q ss_pred hhhccCcccccCCCCcccccceeeeccccccccccCCCcCCC-CccEEeecCcc
Q 040192 290 EIVSDVPEVMMGNLNPFAQFHFLCFSYLPNLKSIYRKPLPFP-HLKEMKVIHCL 342 (386)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~-~L~~L~i~~c~ 342 (386)
.+.. ..+..+++|++|+++++.-....+.....++ +|+.|++++++
T Consensus 213 ~~~~-------~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~ 259 (306)
T 2z66_A 213 SLDT-------FPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQND 259 (306)
T ss_dssp BCCS-------GGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCC
T ss_pred ccCh-------hhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCC
Confidence 6544 2567889999999999943333444566674 99999998853
No 46
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.88 E-value=1.4e-21 Score=178.76 Aligned_cols=257 Identities=16% Similarity=0.252 Sum_probs=185.9
Q ss_pred CccEEEecCCcccccCCCCCCCCCcEEecccCcCCCcCChhhhcCCCcCceecccCCcccccc-chhhcCCCccCEEEcC
Q 040192 55 NVRRLSLMENQIENLSEVPTCPYLRTLFLNNNAPLRRIDSGFFQSMPRLNVLNLSGAIRLYSF-PLGISKLISLQHLDLS 133 (386)
Q Consensus 55 ~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~-~~~~~~l~~L~~L~l~ 133 (386)
+++.++++++.+..+|... .++|+.|++++| .+..+++..+..+++|++|++++| .+..+ |..++.+++|++|+++
T Consensus 34 ~l~~l~~~~~~l~~ip~~~-~~~l~~L~l~~n-~i~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~ 110 (332)
T 2ft3_A 34 HLRVVQCSDLGLKAVPKEI-SPDTTLLDLQNN-DISELRKDDFKGLQHLYALVLVNN-KISKIHEKAFSPLRKLQKLYIS 110 (332)
T ss_dssp ETTEEECCSSCCSSCCSCC-CTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSS-CCCEECGGGSTTCTTCCEEECC
T ss_pred cCCEEECCCCCccccCCCC-CCCCeEEECCCC-cCCccCHhHhhCCCCCcEEECCCC-ccCccCHhHhhCcCCCCEEECC
Confidence 6899999999998887653 479999999999 788877666899999999999999 78766 7789999999999999
Q ss_pred CCCCCcccHhhhccCCCCEEEccCCccccccchhhhcCCCCCcEEEEeccCCccc----cCCCcCccccccc-ceeecCC
Q 040192 134 NTGIAELPKELNALVNLTCLNLEETWRLTVIPRRLISSFSSLHVLRIFGSGYSYS----DGMIGNGEFEQLC-GFRRSKS 208 (386)
Q Consensus 134 ~~~i~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~----~~~~~l~~L~~L~-~~~~~~~ 208 (386)
+|.++.+|..+. ++|++|++++| .+..++...+..+++|+.|++++|.+... .....+ .|+.+. ..+.+.+
T Consensus 111 ~n~l~~l~~~~~--~~L~~L~l~~n-~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~~ 186 (332)
T 2ft3_A 111 KNHLVEIPPNLP--SSLVELRIHDN-RIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLTG 186 (332)
T ss_dssp SSCCCSCCSSCC--TTCCEEECCSS-CCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCSS
T ss_pred CCcCCccCcccc--ccCCEEECCCC-ccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCCCc
Confidence 999999887654 89999999999 56677776689999999999999988642 222233 455444 2222222
Q ss_pred ccccccccccCCcEEEeeccCCccchhcccccccccCccccccCcccEEEecCCCCCCccc--cccCCCCCcEEeecCCC
Q 040192 209 LDVSALADLKRLNRLKIAECYGLAELKMDYKSVVQNTGQSFVFHSLKKFQISYCKELKDLT--FLIFAPNLKSIEVDSCY 286 (386)
Q Consensus 209 ~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~--~l~~l~~L~~L~l~~c~ 286 (386)
.+..+ .++|++|++++|.... .....+. .+++|+.|++++| .++.++ .+..+++|+.|++++|.
T Consensus 187 -l~~~~--~~~L~~L~l~~n~i~~-~~~~~l~---------~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N~ 252 (332)
T 2ft3_A 187 -IPKDL--PETLNELHLDHNKIQA-IELEDLL---------RYSKLYRLGLGHN-QIRMIENGSLSFLPTLRELHLDNNK 252 (332)
T ss_dssp -CCSSS--CSSCSCCBCCSSCCCC-CCTTSST---------TCTTCSCCBCCSS-CCCCCCTTGGGGCTTCCEEECCSSC
T ss_pred -cCccc--cCCCCEEECCCCcCCc-cCHHHhc---------CCCCCCEEECCCC-cCCcCChhHhhCCCCCCEEECCCCc
Confidence 11122 2578888888775543 3333333 6778888888887 455543 46777888888888754
Q ss_pred ccchhhccCcccccCCCCcccccceeeeccccccccccCC-C------cCCCCccEEeecCcc
Q 040192 287 ALEEIVSDVPEVMMGNLNPFAQFHFLCFSYLPNLKSIYRK-P------LPFPHLKEMKVIHCL 342 (386)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~-~------~~~~~L~~L~i~~c~ 342 (386)
++.++. .+..+++|++|+++++ .+..++.. . ..++.|+.|++.+++
T Consensus 253 -l~~lp~--------~l~~l~~L~~L~l~~N-~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~ 305 (332)
T 2ft3_A 253 -LSRVPA--------GLPDLKLLQVVYLHTN-NITKVGVNDFCPVGFGVKRAYYNGISLFNNP 305 (332)
T ss_dssp -CCBCCT--------TGGGCTTCCEEECCSS-CCCBCCTTSSSCSSCCSSSCCBSEEECCSSS
T ss_pred -CeecCh--------hhhcCccCCEEECCCC-CCCccChhHccccccccccccccceEeecCc
Confidence 555433 4567788888888877 55555432 1 115677788887765
No 47
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.88 E-value=4.6e-22 Score=178.06 Aligned_cols=226 Identities=23% Similarity=0.289 Sum_probs=181.5
Q ss_pred hccccccccEEEEcCCCCCCCCcccccccCccEEEecCCcccccCCC--CCCCCCcEEecccCcCCCcCChhhhcCCCcC
Q 040192 26 SDIEEEKEEHLVYAGAGLSETPDVRKWEKNVRRLSLMENQIENLSEV--PTCPYLRTLFLNNNAPLRRIDSGFFQSMPRL 103 (386)
Q Consensus 26 ~~~~~~~~~~l~~~~~~l~~~p~~~~~~~~L~~L~l~~~~~~~~~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L 103 (386)
|.|.......+.+.+.++..+|. .+++++++|++++|.+..++.. ..+++|++|++++| .+..+.+..+..+++|
T Consensus 6 C~C~~~~~~~~~c~~~~l~~ip~--~~~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n-~l~~~~~~~~~~l~~L 82 (285)
T 1ozn_A 6 CVCYNEPKVTTSCPQQGLQAVPV--GIPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSN-VLARIDAAAFTGLALL 82 (285)
T ss_dssp CEEECSSSCEEECCSSCCSSCCT--TCCTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSS-CCCEECTTTTTTCTTC
T ss_pred ceECCCCCeEEEcCcCCcccCCc--CCCCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCC-ccceeCHhhcCCccCC
Confidence 44554345788999999999985 2233899999999999997643 88999999999999 7777766568999999
Q ss_pred ceecccCCcccccc-chhhcCCCccCEEEcCCCCCCcc-cHhhhccCCCCEEEccCCccccccchhhhcCCCCCcEEEEe
Q 040192 104 NVLNLSGAIRLYSF-PLGISKLISLQHLDLSNTGIAEL-PKELNALVNLTCLNLEETWRLTVIPRRLISSFSSLHVLRIF 181 (386)
Q Consensus 104 ~~L~l~~~~~~~~~-~~~~~~l~~L~~L~l~~~~i~~l-~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~ 181 (386)
++|++++|..+..+ +..+..+++|++|++++|.++.+ +..+..+++|+.|++++| .+..++...+..+++|++|+++
T Consensus 83 ~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~ 161 (285)
T 1ozn_A 83 EQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDN-ALQALPDDTFRDLGNLTHLFLH 161 (285)
T ss_dssp CEEECCSCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECC
T ss_pred CEEeCCCCCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCC-cccccCHhHhccCCCccEEECC
Confidence 99999999337776 67789999999999999999877 456788999999999999 5567776668899999999999
Q ss_pred ccCCccccCCCcCcccccccceeecCCccccccccccCCcEEEeeccCCccchhcccccccccCccccccCcccEEEecC
Q 040192 182 GSGYSYSDGMIGNGEFEQLCGFRRSKSLDVSALADLKRLNRLKIAECYGLAELKMDYKSVVQNTGQSFVFHSLKKFQISY 261 (386)
Q Consensus 182 ~~~~~~~~~~~~l~~L~~L~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~ 261 (386)
+|.+.... ...+..+++|+.|++++|.... ..+..+. .+++|+.|++++
T Consensus 162 ~n~l~~~~---------------------~~~~~~l~~L~~L~l~~n~l~~-~~~~~~~---------~l~~L~~L~l~~ 210 (285)
T 1ozn_A 162 GNRISSVP---------------------ERAFRGLHSLDRLLLHQNRVAH-VHPHAFR---------DLGRLMTLYLFA 210 (285)
T ss_dssp SSCCCEEC---------------------TTTTTTCTTCCEEECCSSCCCE-ECTTTTT---------TCTTCCEEECCS
T ss_pred CCcccccC---------------------HHHhcCccccCEEECCCCcccc-cCHhHcc---------CcccccEeeCCC
Confidence 99777541 2235667899999999997654 3344444 789999999999
Q ss_pred CCCCCccc--cccCCCCCcEEeecCCCc
Q 040192 262 CKELKDLT--FLIFAPNLKSIEVDSCYA 287 (386)
Q Consensus 262 ~~~l~~~~--~l~~l~~L~~L~l~~c~~ 287 (386)
| .++.++ .+..+++|+.|++++++.
T Consensus 211 n-~l~~~~~~~~~~l~~L~~L~l~~N~~ 237 (285)
T 1ozn_A 211 N-NLSALPTEALAPLRALQYLRLNDNPW 237 (285)
T ss_dssp S-CCSCCCHHHHTTCTTCCEEECCSSCE
T ss_pred C-cCCcCCHHHcccCcccCEEeccCCCc
Confidence 9 566654 378899999999999763
No 48
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.88 E-value=4e-21 Score=192.67 Aligned_cols=294 Identities=18% Similarity=0.172 Sum_probs=191.0
Q ss_pred cccEEEEcCCCCCCCCc--ccccccCccEEEecCCcccccCCC--CCCCCCcEEecccCcCCCcCChhhhcCCCcCceec
Q 040192 32 KEEHLVYAGAGLSETPD--VRKWEKNVRRLSLMENQIENLSEV--PTCPYLRTLFLNNNAPLRRIDSGFFQSMPRLNVLN 107 (386)
Q Consensus 32 ~~~~l~~~~~~l~~~p~--~~~~~~~L~~L~l~~~~~~~~~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~ 107 (386)
....+.+.+..+.++|. +..++ +|++|++++|.+.+++.. ..+++|++|++++| .+..+++..++.+++|++|+
T Consensus 26 ~l~~L~Ls~n~l~~~~~~~~~~l~-~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~l~~~~~~~l~~L~~L~ 103 (680)
T 1ziw_A 26 NITVLNLTHNQLRRLPAANFTRYS-QLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHN-ELSQLSDKTFAFCTNLTELH 103 (680)
T ss_dssp TCSEEECCSSCCCCCCGGGGGGGT-TCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSS-CCCCCCTTTTTTCTTCSEEE
T ss_pred CCcEEECCCCCCCCcCHHHHhCCC-cCcEEECCCCccCccCHHHHhcccCcCEEECCCC-ccCccChhhhccCCCCCEEE
Confidence 57889999999988864 78888 999999999999886544 78999999999999 78888887689999999999
Q ss_pred ccCCccccccc-hhhcCCCccCEEEcCCCCCCcc-cHhhhccCCCCEEEccCCccccccchhhhc--CCCCCcEEEEecc
Q 040192 108 LSGAIRLYSFP-LGISKLISLQHLDLSNTGIAEL-PKELNALVNLTCLNLEETWRLTVIPRRLIS--SFSSLHVLRIFGS 183 (386)
Q Consensus 108 l~~~~~~~~~~-~~~~~l~~L~~L~l~~~~i~~l-~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~--~l~~L~~L~l~~~ 183 (386)
+++| .+..++ ..++++++|++|++++|.++.. |..++.+++|++|++++|. +..++...+. .+++|++|++++|
T Consensus 104 L~~n-~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~~~~~~L~~L~L~~n 181 (680)
T 1ziw_A 104 LMSN-SIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNK-IQALKSEELDIFANSSLKKLELSSN 181 (680)
T ss_dssp CCSS-CCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSC-CCCBCHHHHGGGTTCEESEEECTTC
T ss_pred CCCC-ccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCc-ccccCHHHhhccccccccEEECCCC
Confidence 9999 777775 6788999999999999988855 4567789999999999994 4555543343 5689999999998
Q ss_pred CCcccc--CCCcCccccccc----------------------------ceeecCCcccccccccc--CCcEEEeeccCCc
Q 040192 184 GYSYSD--GMIGNGEFEQLC----------------------------GFRRSKSLDVSALADLK--RLNRLKIAECYGL 231 (386)
Q Consensus 184 ~~~~~~--~~~~l~~L~~L~----------------------------~~~~~~~~~~~~l~~~~--~L~~L~l~~~~~~ 231 (386)
.+.+.. .+..+..|+.+. ..+...+..+..+..++ +|+.|++++|+..
T Consensus 182 ~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~ 261 (680)
T 1ziw_A 182 QIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLN 261 (680)
T ss_dssp CCCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEECTTSCCC
T ss_pred cccccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhhccCcCCCCEEECCCCCcC
Confidence 877651 223333333321 11111222233444443 3777777777544
Q ss_pred cchhcccccccccCccccccCcccEEEecCCCCCCcc--ccccCCCCCcEEeecCCCccchhhcc-CcccccCCCCcccc
Q 040192 232 AELKMDYKSVVQNTGQSFVFHSLKKFQISYCKELKDL--TFLIFAPNLKSIEVDSCYALEEIVSD-VPEVMMGNLNPFAQ 308 (386)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~--~~l~~l~~L~~L~l~~c~~~~~~~~~-~~~~~~~~~~~~~~ 308 (386)
. .....+. .+++|+.|++++|. ++.. ..+..+++|+.|++.++.....+... ........+..+++
T Consensus 262 ~-~~~~~~~---------~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~ 330 (680)
T 1ziw_A 262 V-VGNDSFA---------WLPQLEYFFLEYNN-IQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKC 330 (680)
T ss_dssp E-ECTTTTT---------TCTTCCEEECCSCC-BSEECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCTT
T ss_pred c-cCccccc---------CcccccEeeCCCCc-cCccChhhhcCCCCccEEeccchhhhcccccccccccChhhcccCCC
Confidence 3 3333333 56777777777773 4432 23556666777766653211110000 00000024455666
Q ss_pred cceeeecccccccccc-CCCcCCCCccEEeecCc
Q 040192 309 FHFLCFSYLPNLKSIY-RKPLPFPHLKEMKVIHC 341 (386)
Q Consensus 309 L~~L~l~~~~~l~~~~-~~~~~~~~L~~L~i~~c 341 (386)
|++|+++++ .+..++ .....+++|++|++++|
T Consensus 331 L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~Ls~n 363 (680)
T 1ziw_A 331 LEHLNMEDN-DIPGIKSNMFTGLINLKYLSLSNS 363 (680)
T ss_dssp CCEEECCSC-CBCCCCTTTTTTCTTCCEEECTTC
T ss_pred CCEEECCCC-ccCCCChhHhccccCCcEEECCCC
Confidence 666666666 333332 22444566666666554
No 49
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.88 E-value=3.1e-21 Score=191.55 Aligned_cols=150 Identities=24% Similarity=0.313 Sum_probs=123.6
Q ss_pred ccEEEEcCCCCCCCCcccccccCccEEEecCCcccccCCC--CCCCCCcEEecccCcCCCcCChhhhcCCCcCceecccC
Q 040192 33 EEHLVYAGAGLSETPDVRKWEKNVRRLSLMENQIENLSEV--PTCPYLRTLFLNNNAPLRRIDSGFFQSMPRLNVLNLSG 110 (386)
Q Consensus 33 ~~~l~~~~~~l~~~p~~~~~~~~L~~L~l~~~~~~~~~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~ 110 (386)
...+.|.+.++..+|. .+|+++++|++++|.++.+++. ..+++|++|++++| .+..+++.+|+++++|++|++++
T Consensus 33 ~~~~~c~~~~l~~vP~--~lp~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N-~i~~i~~~~f~~L~~L~~L~Ls~ 109 (635)
T 4g8a_A 33 NITYQCMELNFYKIPD--NLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRC-EIQTIEDGAYQSLSHLSTLILTG 109 (635)
T ss_dssp TTEEECTTSCCSSCCS--SSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTC-CCCEECTTTTTTCTTCCEEECTT
T ss_pred CCEEECCCCCcCccCC--CCCcCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCC-cCCCcChhHhcCCCCCCEEEccC
Confidence 5577889999999985 4555899999999999997654 88999999999999 88888887789999999999999
Q ss_pred Cccccccc-hhhcCCCccCEEEcCCCCCCcccH-hhhccCCCCEEEccCCcccc-ccchhhhcCCCCCcEEEEeccCCcc
Q 040192 111 AIRLYSFP-LGISKLISLQHLDLSNTGIAELPK-ELNALVNLTCLNLEETWRLT-VIPRRLISSFSSLHVLRIFGSGYSY 187 (386)
Q Consensus 111 ~~~~~~~~-~~~~~l~~L~~L~l~~~~i~~l~~-~~~~l~~L~~L~l~~~~~~~-~~~~~~l~~l~~L~~L~l~~~~~~~ 187 (386)
| .+..+| ..|.++++|++|++++|.++.++. .++.+++|++|++++|.... ..|. .++.+++|++|++++|.+..
T Consensus 110 N-~l~~l~~~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~-~~~~l~~L~~L~L~~N~l~~ 187 (635)
T 4g8a_A 110 N-PIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPE-YFSNLTNLEHLDLSSNKIQS 187 (635)
T ss_dssp C-CCCEECGGGGTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCG-GGGGCTTCCEEECCSSCCCE
T ss_pred C-cCCCCCHHHhcCCCCCCEEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCch-hhccchhhhhhcccCccccc
Confidence 9 888775 467899999999999999988875 47889999999999984433 2344 37888999999998877654
No 50
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.88 E-value=9.6e-22 Score=178.30 Aligned_cols=267 Identities=14% Similarity=0.177 Sum_probs=213.9
Q ss_pred cccCCCeeechhHH--Hhhhcccc----ccccEEEEcCCCCCC---CC-cccccccCccEEEecC-Ccccc-cCCC-CCC
Q 040192 9 PVETWKCTKEAMLP--RMSSDIEE----EKEEHLVYAGAGLSE---TP-DVRKWEKNVRRLSLME-NQIEN-LSEV-PTC 75 (386)
Q Consensus 9 ~~~~~~~~~~d~~~--~~~~~~~~----~~~~~l~~~~~~l~~---~p-~~~~~~~~L~~L~l~~-~~~~~-~~~~-~~~ 75 (386)
.+..|... .|.|. |.++.|.. .....+.+.+..+.+ +| .+..++ +|++|++++ |.+.+ +|.. ..+
T Consensus 23 ~l~~W~~~-~~~C~~~w~gv~C~~~~~~~~l~~L~L~~~~l~~~~~~~~~l~~l~-~L~~L~L~~~n~l~~~~p~~l~~l 100 (313)
T 1ogq_A 23 TLSSWLPT-TDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLP-YLNFLYIGGINNLVGPIPPAIAKL 100 (313)
T ss_dssp GGTTCCTT-SCTTTTCSTTEEECCSSSCCCEEEEEEECCCCSSCEECCGGGGGCT-TCSEEEEEEETTEESCCCGGGGGC
T ss_pred cccCCCCC-CCCCcCCCcceEeCCCCCCceEEEEECCCCCccCCcccChhHhCCC-CCCeeeCCCCCcccccCChhHhcC
Confidence 35678653 56777 99988875 356778889988875 55 488888 999999995 88886 6654 899
Q ss_pred CCCcEEecccCcCCC-cCChhhhcCCCcCceecccCCcccc-ccchhhcCCCccCEEEcCCCCCC-cccHhhhccC-CCC
Q 040192 76 PYLRTLFLNNNAPLR-RIDSGFFQSMPRLNVLNLSGAIRLY-SFPLGISKLISLQHLDLSNTGIA-ELPKELNALV-NLT 151 (386)
Q Consensus 76 ~~L~~L~l~~~~~~~-~~~~~~~~~l~~L~~L~l~~~~~~~-~~~~~~~~l~~L~~L~l~~~~i~-~l~~~~~~l~-~L~ 151 (386)
++|++|++++| .+. .+|.. +..+++|++|++++| .+. .+|..+..+++|++|++++|.++ .+|..++.++ +|+
T Consensus 101 ~~L~~L~Ls~n-~l~~~~p~~-~~~l~~L~~L~Ls~N-~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~ 177 (313)
T 1ogq_A 101 TQLHYLYITHT-NVSGAIPDF-LSQIKTLVTLDFSYN-ALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFT 177 (313)
T ss_dssp TTCSEEEEEEE-CCEEECCGG-GGGCTTCCEEECCSS-EEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCC
T ss_pred CCCCEEECcCC-eeCCcCCHH-HhCCCCCCEEeCCCC-ccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCc
Confidence 99999999999 665 56655 889999999999999 777 67889999999999999999998 8888999998 999
Q ss_pred EEEccCCccccccchhhhcCCCCCcEEEEeccCCccccCCCcCcccccccceeecCCccccccccccCCcEEEeeccCCc
Q 040192 152 CLNLEETWRLTVIPRRLISSFSSLHVLRIFGSGYSYSDGMIGNGEFEQLCGFRRSKSLDVSALADLKRLNRLKIAECYGL 231 (386)
Q Consensus 152 ~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~L~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~ 231 (386)
.|++++|.....+|.. +..+. |+.|++++|.+.+. .+..+..+++|+.|++++|+..
T Consensus 178 ~L~L~~N~l~~~~~~~-~~~l~-L~~L~Ls~N~l~~~---------------------~~~~~~~l~~L~~L~L~~N~l~ 234 (313)
T 1ogq_A 178 SMTISRNRLTGKIPPT-FANLN-LAFVDLSRNMLEGD---------------------ASVLFGSDKNTQKIHLAKNSLA 234 (313)
T ss_dssp EEECCSSEEEEECCGG-GGGCC-CSEEECCSSEEEEC---------------------CGGGCCTTSCCSEEECCSSEEC
T ss_pred EEECcCCeeeccCChH-HhCCc-ccEEECcCCcccCc---------------------CCHHHhcCCCCCEEECCCCcee
Confidence 9999999666577765 77777 99999999977654 2345667899999999999765
Q ss_pred cchhcccccccccCccccccCcccEEEecCCCCCC-cc-ccccCCCCCcEEeecCCCccchhhccCcccccCCCCccccc
Q 040192 232 AELKMDYKSVVQNTGQSFVFHSLKKFQISYCKELK-DL-TFLIFAPNLKSIEVDSCYALEEIVSDVPEVMMGNLNPFAQF 309 (386)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~-~~-~~l~~l~~L~~L~l~~c~~~~~~~~~~~~~~~~~~~~~~~L 309 (386)
...+. +. .+++|+.|++++|. ++ .+ ..+..+++|+.|++++|. ++...+ ....+++|
T Consensus 235 ~~~~~--~~---------~l~~L~~L~Ls~N~-l~~~~p~~l~~l~~L~~L~Ls~N~-l~~~ip--------~~~~l~~L 293 (313)
T 1ogq_A 235 FDLGK--VG---------LSKNLNGLDLRNNR-IYGTLPQGLTQLKFLHSLNVSFNN-LCGEIP--------QGGNLQRF 293 (313)
T ss_dssp CBGGG--CC---------CCTTCCEEECCSSC-CEECCCGGGGGCTTCCEEECCSSE-EEEECC--------CSTTGGGS
T ss_pred eecCc--cc---------ccCCCCEEECcCCc-ccCcCChHHhcCcCCCEEECcCCc-ccccCC--------CCcccccc
Confidence 43322 32 78999999999995 54 44 457889999999999966 554333 33789999
Q ss_pred ceeeecccccccccc
Q 040192 310 HFLCFSYLPNLKSIY 324 (386)
Q Consensus 310 ~~L~l~~~~~l~~~~ 324 (386)
+.|++++++.+...|
T Consensus 294 ~~l~l~~N~~lc~~p 308 (313)
T 1ogq_A 294 DVSAYANNKCLCGSP 308 (313)
T ss_dssp CGGGTCSSSEEESTT
T ss_pred ChHHhcCCCCccCCC
Confidence 999999998776543
No 51
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.87 E-value=1.6e-20 Score=192.37 Aligned_cols=152 Identities=18% Similarity=0.205 Sum_probs=117.3
Q ss_pred cccEEEEcCCCCCCCC--cccccccCccEEEecCCccc-ccCC-C-CCCCCCcEEecccCcCCCcCChhhhcCCCcCcee
Q 040192 32 KEEHLVYAGAGLSETP--DVRKWEKNVRRLSLMENQIE-NLSE-V-PTCPYLRTLFLNNNAPLRRIDSGFFQSMPRLNVL 106 (386)
Q Consensus 32 ~~~~l~~~~~~l~~~p--~~~~~~~~L~~L~l~~~~~~-~~~~-~-~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L 106 (386)
....++++++.+.+++ ++..++ +|+.|++++|... .++. . ..+++|++|++++| .+..+.+..++++++|++|
T Consensus 25 ~l~~LdLs~N~i~~i~~~~~~~l~-~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N-~l~~~~p~~~~~l~~L~~L 102 (844)
T 3j0a_A 25 TTERLLLSFNYIRTVTASSFPFLE-QLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSS-KIYFLHPDAFQGLFHLFEL 102 (844)
T ss_dssp TCCEEEEESCCCCEECSSSCSSCC-SCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTC-CCCEECTTSSCSCSSCCCE
T ss_pred CcCEEECCCCcCCccChhHCcccc-cCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCC-cCcccCHhHccCCcccCEe
Confidence 5778999998888763 478888 9999999999544 4533 3 88999999999999 7777766558999999999
Q ss_pred cccCCccccc-cchh--hcCCCccCEEEcCCCCCCccc--HhhhccCCCCEEEccCCccccccchhhhcCC--CCCcEEE
Q 040192 107 NLSGAIRLYS-FPLG--ISKLISLQHLDLSNTGIAELP--KELNALVNLTCLNLEETWRLTVIPRRLISSF--SSLHVLR 179 (386)
Q Consensus 107 ~l~~~~~~~~-~~~~--~~~l~~L~~L~l~~~~i~~l~--~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l--~~L~~L~ 179 (386)
++++| .+.. ++.. ++++++|++|++++|.++.++ ..++.+++|++|++++|......+.. +..+ ++|+.|+
T Consensus 103 ~Ls~n-~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~-l~~l~~~~L~~L~ 180 (844)
T 3j0a_A 103 RLYFC-GLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHE-LEPLQGKTLSFFS 180 (844)
T ss_dssp ECTTC-CCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGG-GHHHHHCSSCCCE
T ss_pred eCcCC-CCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHH-cccccCCccceEE
Confidence 99999 7764 4544 889999999999999998653 57889999999999998544433333 5444 5666666
Q ss_pred EeccCCcc
Q 040192 180 IFGSGYSY 187 (386)
Q Consensus 180 l~~~~~~~ 187 (386)
++.|.+..
T Consensus 181 L~~n~l~~ 188 (844)
T 3j0a_A 181 LAANSLYS 188 (844)
T ss_dssp ECCSBSCC
T ss_pred CCCCcccc
Confidence 66665544
No 52
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.86 E-value=1.4e-20 Score=178.80 Aligned_cols=242 Identities=17% Similarity=0.219 Sum_probs=194.6
Q ss_pred CccEEEecCCcccccCCCCCCCCCcEEecccCcCCCcCChhhhcCCCcCceecccCCcccccc-chhhcCCCccCEEEcC
Q 040192 55 NVRRLSLMENQIENLSEVPTCPYLRTLFLNNNAPLRRIDSGFFQSMPRLNVLNLSGAIRLYSF-PLGISKLISLQHLDLS 133 (386)
Q Consensus 55 ~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~-~~~~~~l~~L~~L~l~ 133 (386)
..+.++..+..+..+|.. -.++++.|++++| .+..++...+..+++|++|++++| .+..+ +..+..+++|++|+++
T Consensus 44 ~~~~v~c~~~~l~~iP~~-~~~~l~~L~L~~n-~i~~~~~~~~~~l~~L~~L~Ls~n-~i~~i~~~~~~~l~~L~~L~L~ 120 (440)
T 3zyj_A 44 QFSKVICVRKNLREVPDG-ISTNTRLLNLHEN-QIQIIKVNSFKHLRHLEILQLSRN-HIRTIEIGAFNGLANLNTLELF 120 (440)
T ss_dssp TSCEEECCSCCCSSCCSC-CCTTCSEEECCSC-CCCEECTTTTSSCSSCCEEECCSS-CCCEECGGGGTTCSSCCEEECC
T ss_pred CCCEEEeCCCCcCcCCCC-CCCCCcEEEccCC-cCCeeCHHHhhCCCCCCEEECCCC-cCCccChhhccCCccCCEEECC
Confidence 456788888888887764 3378999999999 788877666899999999999999 78876 4678999999999999
Q ss_pred CCCCCcccH-hhhccCCCCEEEccCCccccccchhhhcCCCCCcEEEEeccCCccccCCCcCcccccccceeecCCcccc
Q 040192 134 NTGIAELPK-ELNALVNLTCLNLEETWRLTVIPRRLISSFSSLHVLRIFGSGYSYSDGMIGNGEFEQLCGFRRSKSLDVS 212 (386)
Q Consensus 134 ~~~i~~l~~-~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~L~~~~~~~~~~~~ 212 (386)
+|.++.++. .+..+++|+.|++++| .+..++...+..+++|++|+++++..... ....
T Consensus 121 ~n~l~~~~~~~~~~l~~L~~L~L~~N-~i~~~~~~~~~~l~~L~~L~l~~~~~l~~--------------------i~~~ 179 (440)
T 3zyj_A 121 DNRLTTIPNGAFVYLSKLKELWLRNN-PIESIPSYAFNRIPSLRRLDLGELKRLSY--------------------ISEG 179 (440)
T ss_dssp SSCCSSCCTTTSCSCSSCCEEECCSC-CCCEECTTTTTTCTTCCEEECCCCTTCCE--------------------ECTT
T ss_pred CCcCCeeCHhHhhccccCceeeCCCC-cccccCHHHhhhCcccCEeCCCCCCCcce--------------------eCcc
Confidence 999998875 5788999999999999 56777776689999999999998543332 0123
Q ss_pred ccccccCCcEEEeeccCCccchhcccccccccCccccccCcccEEEecCCCCCCcc--ccccCCCCCcEEeecCCCccch
Q 040192 213 ALADLKRLNRLKIAECYGLAELKMDYKSVVQNTGQSFVFHSLKKFQISYCKELKDL--TFLIFAPNLKSIEVDSCYALEE 290 (386)
Q Consensus 213 ~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~--~~l~~l~~L~~L~l~~c~~~~~ 290 (386)
.+..+++|+.|++++|+... ++ .+. .+++|+.|++++| .++.+ ..+..+++|+.|+++++. ++.
T Consensus 180 ~~~~l~~L~~L~L~~n~l~~-~~--~~~---------~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~L~~n~-l~~ 245 (440)
T 3zyj_A 180 AFEGLSNLRYLNLAMCNLRE-IP--NLT---------PLIKLDELDLSGN-HLSAIRPGSFQGLMHLQKLWMIQSQ-IQV 245 (440)
T ss_dssp TTTTCSSCCEEECTTSCCSS-CC--CCT---------TCSSCCEEECTTS-CCCEECTTTTTTCTTCCEEECTTCC-CCE
T ss_pred hhhcccccCeecCCCCcCcc-cc--ccC---------CCcccCEEECCCC-ccCccChhhhccCccCCEEECCCCc-eeE
Confidence 46678899999999996653 32 232 7899999999999 56654 347889999999999954 777
Q ss_pred hhccCcccccCCCCcccccceeeeccccccccccCC-CcCCCCccEEeecCcc
Q 040192 291 IVSDVPEVMMGNLNPFAQFHFLCFSYLPNLKSIYRK-PLPFPHLKEMKVIHCL 342 (386)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~-~~~~~~L~~L~i~~c~ 342 (386)
+.. ..+..+++|++|+|+++ .+..++.. ...+++|+.|+++++|
T Consensus 246 ~~~-------~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~Np 290 (440)
T 3zyj_A 246 IER-------NAFDNLQSLVEINLAHN-NLTLLPHDLFTPLHHLERIHLHHNP 290 (440)
T ss_dssp ECT-------TSSTTCTTCCEEECTTS-CCCCCCTTTTSSCTTCCEEECCSSC
T ss_pred ECh-------hhhcCCCCCCEEECCCC-CCCccChhHhccccCCCEEEcCCCC
Confidence 765 37888999999999999 77777654 4668999999998643
No 53
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.86 E-value=1.9e-21 Score=176.77 Aligned_cols=239 Identities=17% Similarity=0.126 Sum_probs=149.2
Q ss_pred CccEEEecCCcccccCCC--CCCCCCcEEecccCcCCCcCChhhhcCCCcCceecccCCccccccchhhcCCCccCEEEc
Q 040192 55 NVRRLSLMENQIENLSEV--PTCPYLRTLFLNNNAPLRRIDSGFFQSMPRLNVLNLSGAIRLYSFPLGISKLISLQHLDL 132 (386)
Q Consensus 55 ~L~~L~l~~~~~~~~~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l 132 (386)
++++|++++|.+..++.. ..+++|++|++++| .+...++ +..+++|++|++++| .+..++ ..++|++|++
T Consensus 35 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~--~~~l~~L~~L~Ls~n-~l~~l~----~~~~L~~L~l 106 (317)
T 3o53_A 35 NVKELDLSGNPLSQISAADLAPFTKLELLNLSSN-VLYETLD--LESLSTLRTLDLNNN-YVQELL----VGPSIETLHA 106 (317)
T ss_dssp GCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTS-CCEEEEE--ETTCTTCCEEECCSS-EEEEEE----ECTTCCEEEC
T ss_pred CCCEEECcCCccCcCCHHHhhCCCcCCEEECCCC-cCCcchh--hhhcCCCCEEECcCC-cccccc----CCCCcCEEEC
Confidence 667777777766665432 66667777777766 4444433 566677777777666 555544 2366677777
Q ss_pred CCCCCCcccHhhhccCCCCEEEccCCccccccchhhhcCCCCCcEEEEeccCCccccCCCcCcccccccceeecCCcccc
Q 040192 133 SNTGIAELPKELNALVNLTCLNLEETWRLTVIPRRLISSFSSLHVLRIFGSGYSYSDGMIGNGEFEQLCGFRRSKSLDVS 212 (386)
Q Consensus 133 ~~~~i~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~L~~~~~~~~~~~~ 212 (386)
++|.++.++.. .+++|+.|++++| .+..++...+..+++|+.|++++|.+... .+.
T Consensus 107 ~~n~l~~~~~~--~~~~L~~L~l~~N-~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~---------------------~~~ 162 (317)
T 3o53_A 107 ANNNISRVSCS--RGQGKKNIYLANN-KITMLRDLDEGCRSRVQYLDLKLNEIDTV---------------------NFA 162 (317)
T ss_dssp CSSCCSEEEEC--CCSSCEEEECCSS-CCCSGGGBCTGGGSSEEEEECTTSCCCEE---------------------EGG
T ss_pred CCCccCCcCcc--ccCCCCEEECCCC-CCCCccchhhhccCCCCEEECCCCCCCcc---------------------cHH
Confidence 77766655432 3566777777766 33444433356666777777766655543 112
Q ss_pred cc-ccccCCcEEEeeccCCccchhcccccccccCccccccCcccEEEecCCCCCCcc-ccccCCCCCcEEeecCCCccch
Q 040192 213 AL-ADLKRLNRLKIAECYGLAELKMDYKSVVQNTGQSFVFHSLKKFQISYCKELKDL-TFLIFAPNLKSIEVDSCYALEE 290 (386)
Q Consensus 213 ~l-~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~-~~l~~l~~L~~L~l~~c~~~~~ 290 (386)
.+ ..+++|++|++++|.... .+ ... .+++|+.|++++| .++.+ +.+..+++|+.|++++|. ++.
T Consensus 163 ~~~~~l~~L~~L~L~~N~l~~-~~--~~~---------~l~~L~~L~Ls~N-~l~~l~~~~~~l~~L~~L~L~~N~-l~~ 228 (317)
T 3o53_A 163 ELAASSDTLEHLNLQYNFIYD-VK--GQV---------VFAKLKTLDLSSN-KLAFMGPEFQSAAGVTWISLRNNK-LVL 228 (317)
T ss_dssp GGGGGTTTCCEEECTTSCCCE-EE--CCC---------CCTTCCEEECCSS-CCCEECGGGGGGTTCSEEECTTSC-CCE
T ss_pred HHhhccCcCCEEECCCCcCcc-cc--ccc---------ccccCCEEECCCC-cCCcchhhhcccCcccEEECcCCc-ccc
Confidence 22 346778888888876543 21 111 5778888888888 45554 346677888888888854 665
Q ss_pred hhccCcccccCCCCcccccceeeecccccc-ccccCCCcCCCCccEEeecCcccCcCC
Q 040192 291 IVSDVPEVMMGNLNPFAQFHFLCFSYLPNL-KSIYRKPLPFPHLKEMKVIHCLKLKKL 347 (386)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l-~~~~~~~~~~~~L~~L~i~~c~~L~~l 347 (386)
++. .+..+++|+.|++++++-. ..++.....+++|+.+++.+++.++..
T Consensus 229 l~~--------~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~~~~~l~~~ 278 (317)
T 3o53_A 229 IEK--------ALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQ 278 (317)
T ss_dssp ECT--------TCCCCTTCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHHHHHHHHSS
T ss_pred hhh--------HhhcCCCCCEEEccCCCccCcCHHHHHhccccceEEECCCchhccCC
Confidence 543 5567788888888887443 234444556778888888777766664
No 54
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.86 E-value=1.8e-20 Score=178.79 Aligned_cols=242 Identities=19% Similarity=0.195 Sum_probs=193.1
Q ss_pred CccEEEecCCcccccCCCCCCCCCcEEecccCcCCCcCChhhhcCCCcCceecccCCcccccc-chhhcCCCccCEEEcC
Q 040192 55 NVRRLSLMENQIENLSEVPTCPYLRTLFLNNNAPLRRIDSGFFQSMPRLNVLNLSGAIRLYSF-PLGISKLISLQHLDLS 133 (386)
Q Consensus 55 ~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~-~~~~~~l~~L~~L~l~ 133 (386)
..+.++..+..+..+|.. -.++++.|++++| .+..+++..+..+++|++|++++| .+..+ +..+..+++|++|+++
T Consensus 55 ~~~~v~c~~~~l~~iP~~-~~~~l~~L~L~~n-~i~~~~~~~~~~l~~L~~L~Ls~n-~i~~~~~~~~~~l~~L~~L~L~ 131 (452)
T 3zyi_A 55 QFSKVVCTRRGLSEVPQG-IPSNTRYLNLMEN-NIQMIQADTFRHLHHLEVLQLGRN-SIRQIEVGAFNGLASLNTLELF 131 (452)
T ss_dssp SSCEEECCSSCCSSCCSC-CCTTCSEEECCSS-CCCEECTTTTTTCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECC
T ss_pred CCcEEEECCCCcCccCCC-CCCCccEEECcCC-cCceECHHHcCCCCCCCEEECCCC-ccCCcChhhccCcccCCEEECC
Confidence 356788888888887753 3379999999999 788777666899999999999999 88766 4678899999999999
Q ss_pred CCCCCcccHh-hhccCCCCEEEccCCccccccchhhhcCCCCCcEEEEeccCCccccCCCcCcccccccceeecCCcccc
Q 040192 134 NTGIAELPKE-LNALVNLTCLNLEETWRLTVIPRRLISSFSSLHVLRIFGSGYSYSDGMIGNGEFEQLCGFRRSKSLDVS 212 (386)
Q Consensus 134 ~~~i~~l~~~-~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~L~~~~~~~~~~~~ 212 (386)
+|.++.+|.. +..+++|++|++++| .+..++...+..+++|+.|+++++..... ....
T Consensus 132 ~n~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~~~~l~~--------------------i~~~ 190 (452)
T 3zyi_A 132 DNWLTVIPSGAFEYLSKLRELWLRNN-PIESIPSYAFNRVPSLMRLDLGELKKLEY--------------------ISEG 190 (452)
T ss_dssp SSCCSBCCTTTSSSCTTCCEEECCSC-CCCEECTTTTTTCTTCCEEECCCCTTCCE--------------------ECTT
T ss_pred CCcCCccChhhhcccCCCCEEECCCC-CcceeCHhHHhcCCcccEEeCCCCCCccc--------------------cChh
Confidence 9999988754 778999999999999 56778776689999999999998543332 0123
Q ss_pred ccccccCCcEEEeeccCCccchhcccccccccCccccccCcccEEEecCCCCCCcc--ccccCCCCCcEEeecCCCccch
Q 040192 213 ALADLKRLNRLKIAECYGLAELKMDYKSVVQNTGQSFVFHSLKKFQISYCKELKDL--TFLIFAPNLKSIEVDSCYALEE 290 (386)
Q Consensus 213 ~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~--~~l~~l~~L~~L~l~~c~~~~~ 290 (386)
.+..+++|+.|++++|+... ++ .+. .+++|+.|++++| .++.+ ..+..+++|+.|++++|. ++.
T Consensus 191 ~~~~l~~L~~L~L~~n~l~~-~~--~~~---------~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~L~~n~-l~~ 256 (452)
T 3zyi_A 191 AFEGLFNLKYLNLGMCNIKD-MP--NLT---------PLVGLEELEMSGN-HFPEIRPGSFHGLSSLKKLWVMNSQ-VSL 256 (452)
T ss_dssp TTTTCTTCCEEECTTSCCSS-CC--CCT---------TCTTCCEEECTTS-CCSEECGGGGTTCTTCCEEECTTSC-CCE
T ss_pred hccCCCCCCEEECCCCcccc-cc--ccc---------ccccccEEECcCC-cCcccCcccccCccCCCEEEeCCCc-Cce
Confidence 46678899999999997654 32 232 7899999999999 46654 347889999999999955 776
Q ss_pred hhccCcccccCCCCcccccceeeeccccccccccCC-CcCCCCccEEeecCcc
Q 040192 291 IVSDVPEVMMGNLNPFAQFHFLCFSYLPNLKSIYRK-PLPFPHLKEMKVIHCL 342 (386)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~-~~~~~~L~~L~i~~c~ 342 (386)
+.. ..+..+++|++|+|+++ .+..++.. ...+++|+.|+++++|
T Consensus 257 ~~~-------~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~Np 301 (452)
T 3zyi_A 257 IER-------NAFDGLASLVELNLAHN-NLSSLPHDLFTPLRYLVELHLHHNP 301 (452)
T ss_dssp ECT-------TTTTTCTTCCEEECCSS-CCSCCCTTSSTTCTTCCEEECCSSC
T ss_pred ECH-------HHhcCCCCCCEEECCCC-cCCccChHHhccccCCCEEEccCCC
Confidence 655 37888999999999999 77777654 4668999999998753
No 55
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.86 E-value=3.9e-20 Score=181.67 Aligned_cols=264 Identities=18% Similarity=0.159 Sum_probs=204.3
Q ss_pred HHhhhccccccccEEEEcCCCCCCCCcccccccCccEEEecCCcccccCCCCCCCCCcEEecccCcCCCcCChhhhcCCC
Q 040192 22 PRMSSDIEEEKEEHLVYAGAGLSETPDVRKWEKNVRRLSLMENQIENLSEVPTCPYLRTLFLNNNAPLRRIDSGFFQSMP 101 (386)
Q Consensus 22 ~~~~~~~~~~~~~~l~~~~~~l~~~p~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~ 101 (386)
....+.|.......+.+.+.++..+|.... + +++.|++++|.+..+|. .+++|++|++++| .+..+|. .++
T Consensus 31 ~~~~~~c~~~~l~~L~ls~n~L~~lp~~l~-~-~L~~L~L~~N~l~~lp~--~l~~L~~L~Ls~N-~l~~lp~----~l~ 101 (622)
T 3g06_A 31 VQKMRACLNNGNAVLNVGESGLTTLPDCLP-A-HITTLVIPDNNLTSLPA--LPPELRTLEVSGN-QLTSLPV----LPP 101 (622)
T ss_dssp HHHHHHHHHHCCCEEECCSSCCSCCCSCCC-T-TCSEEEECSCCCSCCCC--CCTTCCEEEECSC-CCSCCCC----CCT
T ss_pred CcccccccCCCCcEEEecCCCcCccChhhC-C-CCcEEEecCCCCCCCCC--cCCCCCEEEcCCC-cCCcCCC----CCC
Confidence 344556666567899999999999986332 5 89999999999998877 7899999999999 7887775 689
Q ss_pred cCceecccCCccccccchhhcCCCccCEEEcCCCCCCcccHhhhccCCCCEEEccCCccccccchhhhcCCCCCcEEEEe
Q 040192 102 RLNVLNLSGAIRLYSFPLGISKLISLQHLDLSNTGIAELPKELNALVNLTCLNLEETWRLTVIPRRLISSFSSLHVLRIF 181 (386)
Q Consensus 102 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~ 181 (386)
+|++|++++| .+..+|. .+++|+.|++++|.++.+|.. +++|++|++++| .+..+|. .+.+|+.|+++
T Consensus 102 ~L~~L~Ls~N-~l~~l~~---~l~~L~~L~L~~N~l~~lp~~---l~~L~~L~Ls~N-~l~~l~~----~~~~L~~L~L~ 169 (622)
T 3g06_A 102 GLLELSIFSN-PLTHLPA---LPSGLCKLWIFGNQLTSLPVL---PPGLQELSVSDN-QLASLPA----LPSELCKLWAY 169 (622)
T ss_dssp TCCEEEECSC-CCCCCCC---CCTTCCEEECCSSCCSCCCCC---CTTCCEEECCSS-CCSCCCC----CCTTCCEEECC
T ss_pred CCCEEECcCC-cCCCCCC---CCCCcCEEECCCCCCCcCCCC---CCCCCEEECcCC-cCCCcCC----ccCCCCEEECC
Confidence 9999999999 8888876 678899999999999998864 589999999999 5556654 35789999999
Q ss_pred ccCCccccCCCcCccccccc-ceeecCCccccccccccCCcEEEeeccCCccchhcccccccccCccccccCcccEEEec
Q 040192 182 GSGYSYSDGMIGNGEFEQLC-GFRRSKSLDVSALADLKRLNRLKIAECYGLAELKMDYKSVVQNTGQSFVFHSLKKFQIS 260 (386)
Q Consensus 182 ~~~~~~~~~~~~l~~L~~L~-~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~ 260 (386)
+|.+.... ..+++|+.|. ..+.+.+. + ..+++|+.|++++|.... ++ . .+++|+.|+++
T Consensus 170 ~N~l~~l~--~~~~~L~~L~Ls~N~l~~l-~---~~~~~L~~L~L~~N~l~~-l~--~-----------~~~~L~~L~Ls 229 (622)
T 3g06_A 170 NNQLTSLP--MLPSGLQELSVSDNQLASL-P---TLPSELYKLWAYNNRLTS-LP--A-----------LPSGLKELIVS 229 (622)
T ss_dssp SSCCSCCC--CCCTTCCEEECCSSCCSCC-C---CCCTTCCEEECCSSCCSS-CC--C-----------CCTTCCEEECC
T ss_pred CCCCCCCc--ccCCCCcEEECCCCCCCCC-C---CccchhhEEECcCCcccc-cC--C-----------CCCCCCEEEcc
Confidence 99888763 4556666665 22232221 1 124789999998886542 21 1 46889999999
Q ss_pred CCCCCCccccccCCCCCcEEeecCCCccchhhccCcccccCCCCcccccceeeeccccccccccCCCcCCCCccEEeecC
Q 040192 261 YCKELKDLTFLIFAPNLKSIEVDSCYALEEIVSDVPEVMMGNLNPFAQFHFLCFSYLPNLKSIYRKPLPFPHLKEMKVIH 340 (386)
Q Consensus 261 ~~~~l~~~~~l~~l~~L~~L~l~~c~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~i~~ 340 (386)
+| .++.++ ..+++|+.|++++|. ++.++ . .+++|++|++++| .+..++.....+++|+.|++++
T Consensus 230 ~N-~L~~lp--~~l~~L~~L~Ls~N~-L~~lp---------~--~~~~L~~L~Ls~N-~L~~lp~~l~~l~~L~~L~L~~ 293 (622)
T 3g06_A 230 GN-RLTSLP--VLPSELKELMVSGNR-LTSLP---------M--LPSGLLSLSVYRN-QLTRLPESLIHLSSETTVNLEG 293 (622)
T ss_dssp SS-CCSCCC--CCCTTCCEEECCSSC-CSCCC---------C--CCTTCCEEECCSS-CCCSCCGGGGGSCTTCEEECCS
T ss_pred CC-ccCcCC--CCCCcCcEEECCCCC-CCcCC---------c--ccccCcEEeCCCC-CCCcCCHHHhhccccCEEEecC
Confidence 98 577766 567899999999864 66542 2 5688999999998 7778887778899999999988
Q ss_pred cc
Q 040192 341 CL 342 (386)
Q Consensus 341 c~ 342 (386)
++
T Consensus 294 N~ 295 (622)
T 3g06_A 294 NP 295 (622)
T ss_dssp CC
T ss_pred CC
Confidence 64
No 56
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.86 E-value=2.1e-20 Score=185.62 Aligned_cols=307 Identities=17% Similarity=0.169 Sum_probs=215.9
Q ss_pred cccEEEEcCCCCCCCCc--ccccccCccEEEecCCcccccCCC--CCCCCCcEEecccCcCCCcCChhhhcCCCcCceec
Q 040192 32 KEEHLVYAGAGLSETPD--VRKWEKNVRRLSLMENQIENLSEV--PTCPYLRTLFLNNNAPLRRIDSGFFQSMPRLNVLN 107 (386)
Q Consensus 32 ~~~~l~~~~~~l~~~p~--~~~~~~~L~~L~l~~~~~~~~~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~ 107 (386)
..+.++++++.+.++|. +..++ +|++|++++|.++.+++. ..+++|++|++++| .+..+++..|.++++|++|+
T Consensus 53 ~~~~LdLs~N~i~~l~~~~f~~l~-~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N-~l~~l~~~~f~~L~~L~~L~ 130 (635)
T 4g8a_A 53 STKNLDLSFNPLRHLGSYSFFSFP-ELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGN-PIQSLALGAFSGLSSLQKLV 130 (635)
T ss_dssp TCCEEECTTSCCCEECTTTTTTCT-TCCEEECTTCCCCEECTTTTTTCTTCCEEECTTC-CCCEECGGGGTTCTTCCEEE
T ss_pred CCCEEEeeCCCCCCCCHHHHhCCC-CCCEEECCCCcCCCcChhHhcCCCCCCEEEccCC-cCCCCCHHHhcCCCCCCEEE
Confidence 46789999999999863 88899 999999999999997654 78999999999999 88999988899999999999
Q ss_pred ccCCccccccch-hhcCCCccCEEEcCCCCCCc--ccHhhhccCCCCEEEccCCccccccchhhhc--------------
Q 040192 108 LSGAIRLYSFPL-GISKLISLQHLDLSNTGIAE--LPKELNALVNLTCLNLEETWRLTVIPRRLIS-------------- 170 (386)
Q Consensus 108 l~~~~~~~~~~~-~~~~l~~L~~L~l~~~~i~~--l~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~-------------- 170 (386)
+++| .+..++. .++++++|++|++++|.++. .|..++.+++|++|++++|.. ..++...+.
T Consensus 131 Ls~N-~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l-~~~~~~~l~~L~~l~~~~~~~~l 208 (635)
T 4g8a_A 131 AVET-NLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI-QSIYCTDLRVLHQMPLLNLSLDL 208 (635)
T ss_dssp CTTS-CCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCC-CEECGGGGHHHHTCTTCCCEEEC
T ss_pred CCCC-cCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccc-cccccccccchhhhhhhhhhhhc
Confidence 9999 8888764 58999999999999999874 567888999999999988843 222110010
Q ss_pred --------------------------------------------------------------------------------
Q 040192 171 -------------------------------------------------------------------------------- 170 (386)
Q Consensus 171 -------------------------------------------------------------------------------- 170 (386)
T Consensus 209 s~n~l~~i~~~~~~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~~l~~ 288 (635)
T 4g8a_A 209 SLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRL 288 (635)
T ss_dssp TTCCCCEECTTTTTTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGGGSEEEEEEE
T ss_pred ccCcccccCcccccchhhhhhhhhcccccccccchhhcCCcccccccccccccccccccccccccccccccchhhhhhhh
Confidence
Q ss_pred -------------------------------------CCCCCcEEEEeccCCccc---------------------cCCC
Q 040192 171 -------------------------------------SFSSLHVLRIFGSGYSYS---------------------DGMI 192 (386)
Q Consensus 171 -------------------------------------~l~~L~~L~l~~~~~~~~---------------------~~~~ 192 (386)
....|+.|++.++.+... ....
T Consensus 289 ~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~ 368 (635)
T 4g8a_A 289 AYLDYYLDGIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEV 368 (635)
T ss_dssp ECCCSCEEECTTTTGGGTTCSEEEEESCEEEECGGGGSCCCCSEEEEESCEESSCCCCBCTTCCEEEEESCCSCCBCCCC
T ss_pred hhhcccccchhhhhhhhcccccccccccccccccccccchhhhhhhcccccccCcCcccchhhhhcccccccCCCCcccc
Confidence 011122222222211110 0000
Q ss_pred cCccccccc--------------------------------------------------ceeec-CCccccccccccCCc
Q 040192 193 GNGEFEQLC--------------------------------------------------GFRRS-KSLDVSALADLKRLN 221 (386)
Q Consensus 193 ~l~~L~~L~--------------------------------------------------~~~~~-~~~~~~~l~~~~~L~ 221 (386)
.++.|+.+. ..... .......+..+++++
T Consensus 369 ~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~ 448 (635)
T 4g8a_A 369 DLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLI 448 (635)
T ss_dssp BCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEEECSCCTTCTTCCEEECTTSEEESTTSSCTTTTCTTCC
T ss_pred cccccccchhhccccccccccccchhhhhhhhhhhccccccccccccccccccccchhhhhccccccccccccccccccc
Confidence 112222221 00000 111234566788999
Q ss_pred EEEeeccCCccchhcccccccccCccccccCcccEEEecCCCCCCcc--ccccCCCCCcEEeecCCCccchhhccCcccc
Q 040192 222 RLKIAECYGLAELKMDYKSVVQNTGQSFVFHSLKKFQISYCKELKDL--TFLIFAPNLKSIEVDSCYALEEIVSDVPEVM 299 (386)
Q Consensus 222 ~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~--~~l~~l~~L~~L~l~~c~~~~~~~~~~~~~~ 299 (386)
.++++.|.... .....+. .++.++.|++++|.....+ ..+..+++|+.|+|++|. ++.++.
T Consensus 449 ~l~ls~n~l~~-~~~~~~~---------~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~-L~~l~~------ 511 (635)
T 4g8a_A 449 YLDISHTHTRV-AFNGIFN---------GLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQ-LEQLSP------ 511 (635)
T ss_dssp EEECTTSCCEE-CCTTTTT---------TCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSC-CCEECT------
T ss_pred ccccccccccc-ccccccc---------cchhhhhhhhhhcccccccCchhhhhccccCEEECCCCc-cCCcCh------
Confidence 99999886654 2233333 6899999999999655543 346788999999999964 777766
Q ss_pred cCCCCcccccceeeeccccccccccC-CCcCCCCccEEeecCcccCcCCCCCc-ccccCcceEEE
Q 040192 300 MGNLNPFAQFHFLCFSYLPNLKSIYR-KPLPFPHLKEMKVIHCLKLKKLPLDS-NRAKERKIVIR 362 (386)
Q Consensus 300 ~~~~~~~~~L~~L~l~~~~~l~~~~~-~~~~~~~L~~L~i~~c~~L~~l~~~~-~~~~~~l~i~~ 362 (386)
..+..+++|++|+|+++ .+..++. ....+++|+.|++++ ++++.++... ......++.++
T Consensus 512 -~~f~~l~~L~~L~Ls~N-~l~~l~~~~~~~l~~L~~L~Ls~-N~l~~~~~~~l~~l~~~L~~L~ 573 (635)
T 4g8a_A 512 -TAFNSLSSLQVLNMSHN-NFFSLDTFPYKCLNSLQVLDYSL-NHIMTSKKQELQHFPSSLAFLN 573 (635)
T ss_dssp -TTTTTCTTCCEEECTTS-CCCBCCCGGGTTCTTCCEEECTT-SCCCBCCSSCTTCCCTTCCEEE
T ss_pred -HHHcCCCCCCEEECCCC-cCCCCChhHHhCCCCCCEEECCC-CcCCCCCHHHHHhhhCcCCEEE
Confidence 37889999999999999 6777654 356789999999998 4788876543 33324444443
No 57
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.84 E-value=3.5e-20 Score=170.98 Aligned_cols=267 Identities=17% Similarity=0.154 Sum_probs=199.1
Q ss_pred CccEEEecCCcccccCCCCCCCCCcEEecccCcCCCcCChhhhcCCCcCceecccCCcccccc-chhhcCCCccCEEEcC
Q 040192 55 NVRRLSLMENQIENLSEVPTCPYLRTLFLNNNAPLRRIDSGFFQSMPRLNVLNLSGAIRLYSF-PLGISKLISLQHLDLS 133 (386)
Q Consensus 55 ~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~-~~~~~~l~~L~~L~l~ 133 (386)
.....+.+++.++.+|.. -.++|++|++++| .+..++...+..+++|++|++++| .+..+ +..+..+++|++|+++
T Consensus 32 ~~~~c~~~~~~l~~iP~~-~~~~L~~L~l~~n-~i~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~Ls 108 (353)
T 2z80_A 32 RNGICKGSSGSLNSIPSG-LTEAVKSLDLSNN-RITYISNSDLQRCVNLQALVLTSN-GINTIEEDSFSSLGSLEHLDLS 108 (353)
T ss_dssp TTSEEECCSTTCSSCCTT-CCTTCCEEECTTS-CCCEECTTTTTTCTTCCEEECTTS-CCCEECTTTTTTCTTCCEEECC
T ss_pred CCeEeeCCCCCccccccc-ccccCcEEECCCC-cCcccCHHHhccCCCCCEEECCCC-ccCccCHhhcCCCCCCCEEECC
Confidence 344578888888888764 3369999999999 788888766899999999999999 88876 5678999999999999
Q ss_pred CCCCCcccHh-hhccCCCCEEEccCCccccccch-hhhcCCCCCcEEEEeccC-CccccCCCcCcccccccceeecCCcc
Q 040192 134 NTGIAELPKE-LNALVNLTCLNLEETWRLTVIPR-RLISSFSSLHVLRIFGSG-YSYSDGMIGNGEFEQLCGFRRSKSLD 210 (386)
Q Consensus 134 ~~~i~~l~~~-~~~l~~L~~L~l~~~~~~~~~~~-~~l~~l~~L~~L~l~~~~-~~~~~~~~~l~~L~~L~~~~~~~~~~ 210 (386)
+|.++.++.. ++.+++|++|++++| .+..++. ..+..+++|++|++++|. +... .
T Consensus 109 ~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~---------------------~ 166 (353)
T 2z80_A 109 YNYLSNLSSSWFKPLSSLTFLNLLGN-PYKTLGETSLFSHLTKLQILRVGNMDTFTKI---------------------Q 166 (353)
T ss_dssp SSCCSSCCHHHHTTCTTCSEEECTTC-CCSSSCSSCSCTTCTTCCEEEEEESSSCCEE---------------------C
T ss_pred CCcCCcCCHhHhCCCccCCEEECCCC-CCcccCchhhhccCCCCcEEECCCCcccccc---------------------C
Confidence 9999998865 789999999999999 5567776 458899999999999984 3332 1
Q ss_pred ccccccccCCcEEEeeccCCccchhcccccccccCccccccCcccEEEecCCCCCCcccc--ccCCCCCcEEeecCCCcc
Q 040192 211 VSALADLKRLNRLKIAECYGLAELKMDYKSVVQNTGQSFVFHSLKKFQISYCKELKDLTF--LIFAPNLKSIEVDSCYAL 288 (386)
Q Consensus 211 ~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~--l~~l~~L~~L~l~~c~~~ 288 (386)
+..+..+++|++|++++|+... .....+. .+++|++|++++|. ++.++. ...+++|+.|++++|. +
T Consensus 167 ~~~~~~l~~L~~L~l~~n~l~~-~~~~~l~---------~l~~L~~L~l~~n~-l~~~~~~~~~~~~~L~~L~L~~n~-l 234 (353)
T 2z80_A 167 RKDFAGLTFLEELEIDASDLQS-YEPKSLK---------SIQNVSHLILHMKQ-HILLLEIFVDVTSSVECLELRDTD-L 234 (353)
T ss_dssp TTTTTTCCEEEEEEEEETTCCE-ECTTTTT---------TCSEEEEEEEECSC-STTHHHHHHHHTTTEEEEEEESCB-C
T ss_pred HHHccCCCCCCEEECCCCCcCc-cCHHHHh---------ccccCCeecCCCCc-cccchhhhhhhcccccEEECCCCc-c
Confidence 2346678899999999997654 3344444 78999999999994 666543 4568999999999965 6
Q ss_pred chhhccCcccccCCCCcccccceeeecccc----ccccccCCCcCCCCccEEeecCcccCcCCCCCcccccCcceEEEc
Q 040192 289 EEIVSDVPEVMMGNLNPFAQFHFLCFSYLP----NLKSIYRKPLPFPHLKEMKVIHCLKLKKLPLDSNRAKERKIVIRG 363 (386)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~----~l~~~~~~~~~~~~L~~L~i~~c~~L~~l~~~~~~~~~~l~i~~~ 363 (386)
+....... ......+.++.++++++. .+..++.....+++|+.|+++++ +++.+|.........++.++.
T Consensus 235 ~~~~~~~l----~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N-~l~~i~~~~~~~l~~L~~L~L 308 (353)
T 2z80_A 235 DTFHFSEL----STGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRN-QLKSVPDGIFDRLTSLQKIWL 308 (353)
T ss_dssp TTCCCC----------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEEC
T ss_pred cccccccc----ccccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCC-CCCccCHHHHhcCCCCCEEEe
Confidence 65433210 122345667777777662 22234545667999999999995 899998875322244444433
No 58
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.84 E-value=3.4e-20 Score=161.49 Aligned_cols=214 Identities=14% Similarity=0.275 Sum_probs=150.1
Q ss_pred ccEEEEcCCCCCCCCcccccccCccEEEecCCcccccCCC--CCCCCCcEEecccCcCCCcCChhhhcCCCcCceecccC
Q 040192 33 EEHLVYAGAGLSETPDVRKWEKNVRRLSLMENQIENLSEV--PTCPYLRTLFLNNNAPLRRIDSGFFQSMPRLNVLNLSG 110 (386)
Q Consensus 33 ~~~l~~~~~~l~~~p~~~~~~~~L~~L~l~~~~~~~~~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~ 110 (386)
...+.+.+ +.++|. ++.++++|++++|.+..++.. ..+++|++|++++|..+..+++..+..+++|++|++++
T Consensus 15 ~~~v~c~~--l~~ip~---~~~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~ 89 (239)
T 2xwt_C 15 DFRVTCKD--IQRIPS---LPPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRN 89 (239)
T ss_dssp TTEEEECS--CSSCCC---CCTTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEE
T ss_pred cceeEccC--ccccCC---CCCcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCC
Confidence 44555655 777887 343899999999999987663 78999999999998337788776688899999999988
Q ss_pred -Cccccccc-hhhcCCCccCEEEcCCCCCCcccHhhhccCCCC---EEEccCCccccccchhhhcCCCCCc-EEEEeccC
Q 040192 111 -AIRLYSFP-LGISKLISLQHLDLSNTGIAELPKELNALVNLT---CLNLEETWRLTVIPRRLISSFSSLH-VLRIFGSG 184 (386)
Q Consensus 111 -~~~~~~~~-~~~~~l~~L~~L~l~~~~i~~l~~~~~~l~~L~---~L~l~~~~~~~~~~~~~l~~l~~L~-~L~l~~~~ 184 (386)
+ .+..++ ..+..+++|++|++++|.++.+|. +..+++|+ .|++++|..+..++...+..+++|+ .|++++|.
T Consensus 90 ~n-~l~~i~~~~f~~l~~L~~L~l~~n~l~~lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~ 167 (239)
T 2xwt_C 90 TR-NLTYIDPDALKELPLLKFLGIFNTGLKMFPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNG 167 (239)
T ss_dssp ET-TCCEECTTSEECCTTCCEEEEEEECCCSCCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCC
T ss_pred CC-CeeEcCHHHhCCCCCCCEEeCCCCCCccccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCC
Confidence 6 777765 467888899999999988888876 77777777 8888888556666665577788888 88888776
Q ss_pred CccccCCCcCcccccccceeecCCccccccccccCCcEEEeeccCCccchhcccccccccCcccccc-CcccEEEecCCC
Q 040192 185 YSYSDGMIGNGEFEQLCGFRRSKSLDVSALADLKRLNRLKIAECYGLAELKMDYKSVVQNTGQSFVF-HSLKKFQISYCK 263 (386)
Q Consensus 185 ~~~~~~~~~l~~L~~L~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~L~~L~l~~~~ 263 (386)
+.... ...+.. ++|+.|++++|+.+..++...+. .+ ++|+.|++++|
T Consensus 168 l~~i~---------------------~~~~~~-~~L~~L~L~~n~~l~~i~~~~~~---------~l~~~L~~L~l~~N- 215 (239)
T 2xwt_C 168 FTSVQ---------------------GYAFNG-TKLDAVYLNKNKYLTVIDKDAFG---------GVYSGPSLLDVSQT- 215 (239)
T ss_dssp CCEEC---------------------TTTTTT-CEEEEEECTTCTTCCEECTTTTT---------TCSBCCSEEECTTC-
T ss_pred CcccC---------------------HhhcCC-CCCCEEEcCCCCCcccCCHHHhh---------ccccCCcEEECCCC-
Confidence 65431 011222 46777777777433334444443 45 67777777776
Q ss_pred CCCccccccCCCCCcEEeecCCC
Q 040192 264 ELKDLTFLIFAPNLKSIEVDSCY 286 (386)
Q Consensus 264 ~l~~~~~l~~l~~L~~L~l~~c~ 286 (386)
.++.++.. .+++|+.|++.++.
T Consensus 216 ~l~~l~~~-~~~~L~~L~l~~~~ 237 (239)
T 2xwt_C 216 SVTALPSK-GLEHLKELIARNTW 237 (239)
T ss_dssp CCCCCCCT-TCTTCSEEECTTC-
T ss_pred ccccCChh-HhccCceeeccCcc
Confidence 35554433 56666666666643
No 59
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.84 E-value=6.9e-20 Score=163.86 Aligned_cols=218 Identities=17% Similarity=0.233 Sum_probs=162.6
Q ss_pred cEEEecCCcccccCCCCCCCCCcEEecccCcCCCcCChhhhcCCCcCceecccCCcccccc-chhhcCCCccCEEEcCCC
Q 040192 57 RRLSLMENQIENLSEVPTCPYLRTLFLNNNAPLRRIDSGFFQSMPRLNVLNLSGAIRLYSF-PLGISKLISLQHLDLSNT 135 (386)
Q Consensus 57 ~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~-~~~~~~l~~L~~L~l~~~ 135 (386)
++++.+++.+..+|. ...++|+.|++++| .+..++...+..+++|++|++++| .+..+ +..+..+++|++|++++|
T Consensus 14 ~~~~c~~~~l~~ip~-~~~~~l~~L~l~~n-~i~~~~~~~~~~~~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n 90 (285)
T 1ozn_A 14 VTTSCPQQGLQAVPV-GIPAASQRIFLHGN-RISHVPAASFRACRNLTILWLHSN-VLARIDAAAFTGLALLEQLDLSDN 90 (285)
T ss_dssp CEEECCSSCCSSCCT-TCCTTCSEEECTTS-CCCEECTTTTTTCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSC
T ss_pred eEEEcCcCCcccCCc-CCCCCceEEEeeCC-cCCccCHHHcccCCCCCEEECCCC-ccceeCHhhcCCccCCCEEeCCCC
Confidence 577788888887765 34578999999998 777777666888999999999988 77766 667888999999999998
Q ss_pred C-CCcc-cHhhhccCCCCEEEccCCccccccchhhhcCCCCCcEEEEeccCCccccCCCcCcccccccceeecCCccccc
Q 040192 136 G-IAEL-PKELNALVNLTCLNLEETWRLTVIPRRLISSFSSLHVLRIFGSGYSYSDGMIGNGEFEQLCGFRRSKSLDVSA 213 (386)
Q Consensus 136 ~-i~~l-~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~L~~~~~~~~~~~~~ 213 (386)
. +..+ +..+..+++|+.|++++| .+..++...+..+++|++|++++|.+... ....
T Consensus 91 ~~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~~---------------------~~~~ 148 (285)
T 1ozn_A 91 AQLRSVDPATFHGLGRLHTLHLDRC-GLQELGPGLFRGLAALQYLYLQDNALQAL---------------------PDDT 148 (285)
T ss_dssp TTCCCCCTTTTTTCTTCCEEECTTS-CCCCCCTTTTTTCTTCCEEECCSSCCCCC---------------------CTTT
T ss_pred CCccccCHHHhcCCcCCCEEECCCC-cCCEECHhHhhCCcCCCEEECCCCccccc---------------------CHhH
Confidence 6 7766 567788899999999998 44555444578889999999988877654 1223
Q ss_pred cccccCCcEEEeeccCCccchhcccccccccCccccccCcccEEEecCCCCCCcc--ccccCCCCCcEEeecCCCccchh
Q 040192 214 LADLKRLNRLKIAECYGLAELKMDYKSVVQNTGQSFVFHSLKKFQISYCKELKDL--TFLIFAPNLKSIEVDSCYALEEI 291 (386)
Q Consensus 214 l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~--~~l~~l~~L~~L~l~~c~~~~~~ 291 (386)
+..+++|++|++++|+... .+...+. .+++|+.|++++|. ++.+ ..+..+++|+.|++++|. ++.+
T Consensus 149 ~~~l~~L~~L~l~~n~l~~-~~~~~~~---------~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~-l~~~ 216 (285)
T 1ozn_A 149 FRDLGNLTHLFLHGNRISS-VPERAFR---------GLHSLDRLLLHQNR-VAHVHPHAFRDLGRLMTLYLFANN-LSAL 216 (285)
T ss_dssp TTTCTTCCEEECCSSCCCE-ECTTTTT---------TCTTCCEEECCSSC-CCEECTTTTTTCTTCCEEECCSSC-CSCC
T ss_pred hccCCCccEEECCCCcccc-cCHHHhc---------CccccCEEECCCCc-ccccCHhHccCcccccEeeCCCCc-CCcC
Confidence 5567888888888886543 4433343 67888888888884 5543 346778888888888854 6655
Q ss_pred hccCcccccCCCCcccccceeeecccc
Q 040192 292 VSDVPEVMMGNLNPFAQFHFLCFSYLP 318 (386)
Q Consensus 292 ~~~~~~~~~~~~~~~~~L~~L~l~~~~ 318 (386)
+.. .+..+++|++|++++++
T Consensus 217 ~~~-------~~~~l~~L~~L~l~~N~ 236 (285)
T 1ozn_A 217 PTE-------ALAPLRALQYLRLNDNP 236 (285)
T ss_dssp CHH-------HHTTCTTCCEEECCSSC
T ss_pred CHH-------HcccCcccCEEeccCCC
Confidence 442 45677888888888874
No 60
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.84 E-value=3.7e-20 Score=177.85 Aligned_cols=231 Identities=17% Similarity=0.119 Sum_probs=168.9
Q ss_pred CccEEEecCCcccccCC--CCCCCCCcEEecccCcCCCcCChhhhcCCCcCceecccCCccccccchhhcCCCccCEEEc
Q 040192 55 NVRRLSLMENQIENLSE--VPTCPYLRTLFLNNNAPLRRIDSGFFQSMPRLNVLNLSGAIRLYSFPLGISKLISLQHLDL 132 (386)
Q Consensus 55 ~L~~L~l~~~~~~~~~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l 132 (386)
+|++|++++|.+.++++ ...+++|++|++++| .+...++ +..+++|++|++++| .+..++. .++|++|++
T Consensus 35 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~--l~~l~~L~~L~Ls~N-~l~~l~~----~~~L~~L~L 106 (487)
T 3oja_A 35 NVKELDLSGNPLSQISAADLAPFTKLELLNLSSN-VLYETLD--LESLSTLRTLDLNNN-YVQELLV----GPSIETLHA 106 (487)
T ss_dssp GCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTS-CCEEEEE--CTTCTTCCEEECCSS-EEEEEEE----CTTCCEEEC
T ss_pred CccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCC-CCCCCcc--cccCCCCCEEEecCC-cCCCCCC----CCCcCEEEC
Confidence 78889999888888653 378888999999888 6655544 678888999998888 7776653 378888999
Q ss_pred CCCCCCcccHhhhccCCCCEEEccCCccccccchhhhcCCCCCcEEEEeccCCccccCCCcCcccccccceeecCCcccc
Q 040192 133 SNTGIAELPKELNALVNLTCLNLEETWRLTVIPRRLISSFSSLHVLRIFGSGYSYSDGMIGNGEFEQLCGFRRSKSLDVS 212 (386)
Q Consensus 133 ~~~~i~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~L~~~~~~~~~~~~ 212 (386)
++|.++.++. ..+++|+.|++++|.. ..+++..++.+++|+.|++++|.+.+. .+.
T Consensus 107 ~~N~l~~~~~--~~l~~L~~L~L~~N~l-~~~~~~~~~~l~~L~~L~Ls~N~l~~~---------------------~~~ 162 (487)
T 3oja_A 107 ANNNISRVSC--SRGQGKKNIYLANNKI-TMLRDLDEGCRSRVQYLDLKLNEIDTV---------------------NFA 162 (487)
T ss_dssp CSSCCCCEEE--CCCSSCEEEECCSSCC-CSGGGBCGGGGSSEEEEECTTSCCCEE---------------------EGG
T ss_pred cCCcCCCCCc--cccCCCCEEECCCCCC-CCCCchhhcCCCCCCEEECCCCCCCCc---------------------ChH
Confidence 8888887664 2467888889888844 444333378888888888888877764 122
Q ss_pred ccc-cccCCcEEEeeccCCccchhcccccccccCccccccCcccEEEecCCCCCCcc-ccccCCCCCcEEeecCCCccch
Q 040192 213 ALA-DLKRLNRLKIAECYGLAELKMDYKSVVQNTGQSFVFHSLKKFQISYCKELKDL-TFLIFAPNLKSIEVDSCYALEE 290 (386)
Q Consensus 213 ~l~-~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~-~~l~~l~~L~~L~l~~c~~~~~ 290 (386)
.+. .+++|+.|++++|.... .+ ... .+++|+.|++++| .++.+ +.+..+++|+.|++++|. +..
T Consensus 163 ~l~~~l~~L~~L~Ls~N~l~~-~~--~~~---------~l~~L~~L~Ls~N-~l~~~~~~~~~l~~L~~L~Ls~N~-l~~ 228 (487)
T 3oja_A 163 ELAASSDTLEHLNLQYNFIYD-VK--GQV---------VFAKLKTLDLSSN-KLAFMGPEFQSAAGVTWISLRNNK-LVL 228 (487)
T ss_dssp GGGGGTTTCCEEECTTSCCCE-EE--CCC---------CCTTCCEEECCSS-CCCEECGGGGGGTTCSEEECTTSC-CCE
T ss_pred HHhhhCCcccEEecCCCcccc-cc--ccc---------cCCCCCEEECCCC-CCCCCCHhHcCCCCccEEEecCCc-Ccc
Confidence 333 57889999999987654 21 111 6789999999998 46654 457788999999999855 666
Q ss_pred hhccCcccccCCCCcccccceeeecccccc-ccccCCCcCCCCccEEeec
Q 040192 291 IVSDVPEVMMGNLNPFAQFHFLCFSYLPNL-KSIYRKPLPFPHLKEMKVI 339 (386)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l-~~~~~~~~~~~~L~~L~i~ 339 (386)
++. .+..+++|+.|++++++.. ..++.....++.|+.+.+.
T Consensus 229 lp~--------~l~~l~~L~~L~l~~N~l~c~~~~~~~~~l~~L~~l~~~ 270 (487)
T 3oja_A 229 IEK--------ALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQ 270 (487)
T ss_dssp ECT--------TCCCCTTCCEEECTTCCBCHHHHHHHHTTCHHHHHHHHH
T ss_pred cch--------hhccCCCCCEEEcCCCCCcCcchHHHHHhCCCCcEEecc
Confidence 543 5677889999999998544 2344445567778777775
No 61
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.83 E-value=1.5e-18 Score=165.13 Aligned_cols=177 Identities=19% Similarity=0.248 Sum_probs=118.7
Q ss_pred cccEEEEcCCCCCCCCcccccccCccEEEecCCcccccCCCCCCCCCcEEecccCcCCCcCChhhhcCCCcCceecccCC
Q 040192 32 KEEHLVYAGAGLSETPDVRKWEKNVRRLSLMENQIENLSEVPTCPYLRTLFLNNNAPLRRIDSGFFQSMPRLNVLNLSGA 111 (386)
Q Consensus 32 ~~~~l~~~~~~l~~~p~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~ 111 (386)
....+.+.+.++.++|.+ .+ ++++|++++|.+.++|.. .++|+.|++++| .+..++.. .++|++|++++|
T Consensus 72 ~l~~L~l~~~~l~~lp~~--~~-~L~~L~l~~n~l~~lp~~--~~~L~~L~l~~n-~l~~l~~~----~~~L~~L~L~~n 141 (454)
T 1jl5_A 72 QAHELELNNLGLSSLPEL--PP-HLESLVASCNSLTELPEL--PQSLKSLLVDNN-NLKALSDL----PPLLEYLGVSNN 141 (454)
T ss_dssp TCSEEECTTSCCSCCCSC--CT-TCSEEECCSSCCSSCCCC--CTTCCEEECCSS-CCSCCCSC----CTTCCEEECCSS
T ss_pred CCCEEEecCCccccCCCC--cC-CCCEEEccCCcCCccccc--cCCCcEEECCCC-ccCcccCC----CCCCCEEECcCC
Confidence 457888888888888764 23 888999998888887643 477888888887 55555431 267888888887
Q ss_pred ccccccchhhcCCCccCEEEcCCCCCCcccHhhhccCCCCEEEccCCccccccchhhhcCCCCCcEEEEeccCCccccCC
Q 040192 112 IRLYSFPLGISKLISLQHLDLSNTGIAELPKELNALVNLTCLNLEETWRLTVIPRRLISSFSSLHVLRIFGSGYSYSDGM 191 (386)
Q Consensus 112 ~~~~~~~~~~~~l~~L~~L~l~~~~i~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~ 191 (386)
.+..+| .++.+++|++|++++|.++.+|.. ..+|++|++++| .+..+|. ++.+++|++|++++|.+.+..
T Consensus 142 -~l~~lp-~~~~l~~L~~L~l~~N~l~~lp~~---~~~L~~L~L~~n-~l~~l~~--~~~l~~L~~L~l~~N~l~~l~-- 211 (454)
T 1jl5_A 142 -QLEKLP-ELQNSSFLKIIDVDNNSLKKLPDL---PPSLEFIAAGNN-QLEELPE--LQNLPFLTAIYADNNSLKKLP-- 211 (454)
T ss_dssp -CCSSCC-CCTTCTTCCEEECCSSCCSCCCCC---CTTCCEEECCSS-CCSSCCC--CTTCTTCCEEECCSSCCSSCC--
T ss_pred -CCCCCc-ccCCCCCCCEEECCCCcCcccCCC---cccccEEECcCC-cCCcCcc--ccCCCCCCEEECCCCcCCcCC--
Confidence 777776 577788888888888877777643 247888888887 4455663 777788888888877776542
Q ss_pred CcCccccccc-ceeecCCccccccccccCCcEEEeeccCC
Q 040192 192 IGNGEFEQLC-GFRRSKSLDVSALADLKRLNRLKIAECYG 230 (386)
Q Consensus 192 ~~l~~L~~L~-~~~~~~~~~~~~l~~~~~L~~L~l~~~~~ 230 (386)
.....|+.+. ..+.... .+ .+..+++|+.|++++|+.
T Consensus 212 ~~~~~L~~L~l~~n~l~~-lp-~~~~l~~L~~L~l~~N~l 249 (454)
T 1jl5_A 212 DLPLSLESIVAGNNILEE-LP-ELQNLPFLTTIYADNNLL 249 (454)
T ss_dssp CCCTTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCC
T ss_pred CCcCcccEEECcCCcCCc-cc-ccCCCCCCCEEECCCCcC
Confidence 2223555554 2222221 11 355666777777766644
No 62
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.83 E-value=2.3e-19 Score=162.20 Aligned_cols=204 Identities=22% Similarity=0.303 Sum_probs=153.9
Q ss_pred CCCCCCcccccccCccEEEecCCcccccCCCCCCCCCcEEecccCcCCCcCChhhhcCCCcCceecccCCccccccchhh
Q 040192 42 GLSETPDVRKWEKNVRRLSLMENQIENLSEVPTCPYLRTLFLNNNAPLRRIDSGFFQSMPRLNVLNLSGAIRLYSFPLGI 121 (386)
Q Consensus 42 ~l~~~p~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~ 121 (386)
.+.++.....++ ++++|+++++.+..++....+++|+.|++++| .+..+++ +..+++|++|++++| .+..++ .+
T Consensus 30 ~~~~~~~~~~l~-~L~~L~l~~~~i~~l~~~~~l~~L~~L~L~~n-~i~~~~~--~~~l~~L~~L~L~~n-~l~~~~-~~ 103 (308)
T 1h6u_A 30 NVTDTVTQADLD-GITTLSAFGTGVTTIEGVQYLNNLIGLELKDN-QITDLAP--LKNLTKITELELSGN-PLKNVS-AI 103 (308)
T ss_dssp STTSEECHHHHH-TCCEEECTTSCCCCCTTGGGCTTCCEEECCSS-CCCCCGG--GTTCCSCCEEECCSC-CCSCCG-GG
T ss_pred CcCceecHHHcC-CcCEEEeeCCCccCchhhhccCCCCEEEccCC-cCCCChh--HccCCCCCEEEccCC-cCCCch-hh
Confidence 344444566777 89999999998888877788889999999888 7777766 778888999999888 777765 57
Q ss_pred cCCCccCEEEcCCCCCCcccHhhhccCCCCEEEccCCccccccchhhhcCCCCCcEEEEeccCCccccCCCcCccccccc
Q 040192 122 SKLISLQHLDLSNTGIAELPKELNALVNLTCLNLEETWRLTVIPRRLISSFSSLHVLRIFGSGYSYSDGMIGNGEFEQLC 201 (386)
Q Consensus 122 ~~l~~L~~L~l~~~~i~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~L~ 201 (386)
..+++|++|++++|.++.++. +..+++|+.|++++| .+..++. +..+++|+.|++++|.+...
T Consensus 104 ~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n-~l~~~~~--l~~l~~L~~L~l~~n~l~~~------------- 166 (308)
T 1h6u_A 104 AGLQSIKTLDLTSTQITDVTP-LAGLSNLQVLYLDLN-QITNISP--LAGLTNLQYLSIGNAQVSDL------------- 166 (308)
T ss_dssp TTCTTCCEEECTTSCCCCCGG-GTTCTTCCEEECCSS-CCCCCGG--GGGCTTCCEEECCSSCCCCC-------------
T ss_pred cCCCCCCEEECCCCCCCCchh-hcCCCCCCEEECCCC-ccCcCcc--ccCCCCccEEEccCCcCCCC-------------
Confidence 788888888888888887764 778888888888888 5556665 77888888888888876654
Q ss_pred ceeecCCccccccccccCCcEEEeeccCCccchhcccccccccCccccccCcccEEEecCCCCCCccccccCCCCCcEEe
Q 040192 202 GFRRSKSLDVSALADLKRLNRLKIAECYGLAELKMDYKSVVQNTGQSFVFHSLKKFQISYCKELKDLTFLIFAPNLKSIE 281 (386)
Q Consensus 202 ~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~l~~l~~L~~L~ 281 (386)
..+..+++|+.|++++|+... ... +. .+++|+.|++++| .++.++.+..+++|+.|+
T Consensus 167 ----------~~l~~l~~L~~L~l~~n~l~~-~~~--l~---------~l~~L~~L~L~~N-~l~~~~~l~~l~~L~~L~ 223 (308)
T 1h6u_A 167 ----------TPLANLSKLTTLKADDNKISD-ISP--LA---------SLPNLIEVHLKNN-QISDVSPLANTSNLFIVT 223 (308)
T ss_dssp ----------GGGTTCTTCCEEECCSSCCCC-CGG--GG---------GCTTCCEEECTTS-CCCBCGGGTTCTTCCEEE
T ss_pred ----------hhhcCCCCCCEEECCCCccCc-Chh--hc---------CCCCCCEEEccCC-ccCccccccCCCCCCEEE
Confidence 114556788888888876543 222 22 6788888888888 566666677788888888
Q ss_pred ecCCCccchhh
Q 040192 282 VDSCYALEEIV 292 (386)
Q Consensus 282 l~~c~~~~~~~ 292 (386)
+++++ ++..+
T Consensus 224 l~~N~-i~~~~ 233 (308)
T 1h6u_A 224 LTNQT-ITNQP 233 (308)
T ss_dssp EEEEE-EECCC
T ss_pred ccCCe-eecCC
Confidence 88754 55443
No 63
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.83 E-value=1.9e-20 Score=170.18 Aligned_cols=263 Identities=16% Similarity=0.133 Sum_probs=201.6
Q ss_pred cccEEEEcCCCCCCCC--cccccccCccEEEecCCcccccCCCCCCCCCcEEecccCcCCCcCChhhhcCCCcCceeccc
Q 040192 32 KEEHLVYAGAGLSETP--DVRKWEKNVRRLSLMENQIENLSEVPTCPYLRTLFLNNNAPLRRIDSGFFQSMPRLNVLNLS 109 (386)
Q Consensus 32 ~~~~l~~~~~~l~~~p--~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~ 109 (386)
....+.+.+..+.+++ .+..++ +|++|++++|.+.+.++...+++|++|++++| .+..++ ..++|++|+++
T Consensus 35 ~L~~L~L~~n~l~~~~~~~~~~l~-~L~~L~Ls~n~l~~~~~~~~l~~L~~L~Ls~n-~l~~l~-----~~~~L~~L~l~ 107 (317)
T 3o53_A 35 NVKELDLSGNPLSQISAADLAPFT-KLELLNLSSNVLYETLDLESLSTLRTLDLNNN-YVQELL-----VGPSIETLHAA 107 (317)
T ss_dssp GCSEEECTTSCCCCCCHHHHTTCT-TCCEEECTTSCCEEEEEETTCTTCCEEECCSS-EEEEEE-----ECTTCCEEECC
T ss_pred CCCEEECcCCccCcCCHHHhhCCC-cCCEEECCCCcCCcchhhhhcCCCCEEECcCC-cccccc-----CCCCcCEEECC
Confidence 4788999999999886 478888 99999999999998766889999999999999 666544 45899999999
Q ss_pred CCccccccchhhcCCCccCEEEcCCCCCCcccH-hhhccCCCCEEEccCCccccccchhhhcCCCCCcEEEEeccCCccc
Q 040192 110 GAIRLYSFPLGISKLISLQHLDLSNTGIAELPK-ELNALVNLTCLNLEETWRLTVIPRRLISSFSSLHVLRIFGSGYSYS 188 (386)
Q Consensus 110 ~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~l~~-~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~ 188 (386)
+| .+..++.. .+++|+.|++++|.++.++. .++.+++|+.|++++|......+..+...+++|++|++++|.+...
T Consensus 108 ~n-~l~~~~~~--~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~ 184 (317)
T 3o53_A 108 NN-NISRVSCS--RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV 184 (317)
T ss_dssp SS-CCSEEEEC--CCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE
T ss_pred CC-ccCCcCcc--ccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCccc
Confidence 99 88876532 47889999999999997754 6778999999999999544434444345899999999999987765
Q ss_pred cCCCcCcccccccceeecCCccccccccccCCcEEEeeccCCccchhcccccccccCccccccCcccEEEecCCCCCCcc
Q 040192 189 DGMIGNGEFEQLCGFRRSKSLDVSALADLKRLNRLKIAECYGLAELKMDYKSVVQNTGQSFVFHSLKKFQISYCKELKDL 268 (386)
Q Consensus 189 ~~~~~l~~L~~L~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~ 268 (386)
. ....+++|+.|++++|+... ++.. +. .+++|+.|++++| .++.+
T Consensus 185 ~-----------------------~~~~l~~L~~L~Ls~N~l~~-l~~~-~~---------~l~~L~~L~L~~N-~l~~l 229 (317)
T 3o53_A 185 K-----------------------GQVVFAKLKTLDLSSNKLAF-MGPE-FQ---------SAAGVTWISLRNN-KLVLI 229 (317)
T ss_dssp E-----------------------CCCCCTTCCEEECCSSCCCE-ECGG-GG---------GGTTCSEEECTTS-CCCEE
T ss_pred c-----------------------cccccccCCEEECCCCcCCc-chhh-hc---------ccCcccEEECcCC-cccch
Confidence 1 12236899999999997654 4333 33 7899999999999 56665
Q ss_pred c-cccCCCCCcEEeecCCCccchhhccCcccccCCCCcccccceeeeccccccccccCCCcCCCCccEEeecCcccCcC
Q 040192 269 T-FLIFAPNLKSIEVDSCYALEEIVSDVPEVMMGNLNPFAQFHFLCFSYLPNLKSIYRKPLPFPHLKEMKVIHCLKLKK 346 (386)
Q Consensus 269 ~-~l~~l~~L~~L~l~~c~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~i~~c~~L~~ 346 (386)
+ .+..+++|+.|++++++....... ..+..+++|+.|++.++..++.........+.+....-..|..+..
T Consensus 230 ~~~~~~l~~L~~L~l~~N~~~~~~~~-------~~~~~~~~L~~l~l~~~~~l~~~~~~~~~~~~~~~~~~~cc~~l~~ 301 (317)
T 3o53_A 230 EKALRFSQNLEHFDLRGNGFHCGTLR-------DFFSKNQRVQTVAKQTVKKLTGQNEEECTVPTLGHYGAYCCEDLPA 301 (317)
T ss_dssp CTTCCCCTTCCEEECTTCCCBHHHHH-------HHHHTCHHHHHHHHHHHHHHHSSSSCCCSSTTCEEETTEEEBCCTT
T ss_pred hhHhhcCCCCCEEEccCCCccCcCHH-------HHHhccccceEEECCCchhccCCchhccCCCceecccceeeccCCh
Confidence 4 467889999999999774424333 2667889999999998877776544443344444444445665543
No 64
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.83 E-value=7.1e-19 Score=167.37 Aligned_cols=121 Identities=19% Similarity=0.314 Sum_probs=57.8
Q ss_pred CccEEEecCCcccccCCCCCCCCCcEEecccCcCCCcCChhhhcCCCcCceecccCCccccccchhhcCCCccCEEEcCC
Q 040192 55 NVRRLSLMENQIENLSEVPTCPYLRTLFLNNNAPLRRIDSGFFQSMPRLNVLNLSGAIRLYSFPLGISKLISLQHLDLSN 134 (386)
Q Consensus 55 ~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~ 134 (386)
++++|++++|.+.++|....+++|++|++++| .+..+|.. ..+|++|++++| .+..+| .++.+++|++|++++
T Consensus 132 ~L~~L~L~~n~l~~lp~~~~l~~L~~L~l~~N-~l~~lp~~----~~~L~~L~L~~n-~l~~l~-~~~~l~~L~~L~l~~ 204 (454)
T 1jl5_A 132 LLEYLGVSNNQLEKLPELQNSSFLKIIDVDNN-SLKKLPDL----PPSLEFIAAGNN-QLEELP-ELQNLPFLTAIYADN 204 (454)
T ss_dssp TCCEEECCSSCCSSCCCCTTCTTCCEEECCSS-CCSCCCCC----CTTCCEEECCSS-CCSSCC-CCTTCTTCCEEECCS
T ss_pred CCCEEECcCCCCCCCcccCCCCCCCEEECCCC-cCcccCCC----cccccEEECcCC-cCCcCc-cccCCCCCCEEECCC
Confidence 44444444444444443344444444444444 33333321 124444444444 444443 344555555555555
Q ss_pred CCCCcccHhhhccCCCCEEEccCCccccccchhhhcCCCCCcEEEEeccCCccc
Q 040192 135 TGIAELPKELNALVNLTCLNLEETWRLTVIPRRLISSFSSLHVLRIFGSGYSYS 188 (386)
Q Consensus 135 ~~i~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~ 188 (386)
|.++.+|.. .++|+.|++++| .+..+|. ++.+++|+.|++++|.+...
T Consensus 205 N~l~~l~~~---~~~L~~L~l~~n-~l~~lp~--~~~l~~L~~L~l~~N~l~~l 252 (454)
T 1jl5_A 205 NSLKKLPDL---PLSLESIVAGNN-ILEELPE--LQNLPFLTTIYADNNLLKTL 252 (454)
T ss_dssp SCCSSCCCC---CTTCCEEECCSS-CCSSCCC--CTTCTTCCEEECCSSCCSSC
T ss_pred CcCCcCCCC---cCcccEEECcCC-cCCcccc--cCCCCCCCEEECCCCcCCcc
Confidence 555544432 135555555555 3334553 55666666666666655543
No 65
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.82 E-value=5.8e-19 Score=156.52 Aligned_cols=208 Identities=21% Similarity=0.348 Sum_probs=145.7
Q ss_pred hHHHhhhccccc-cccEEEEcCCCCCCCCcccccccCccEEEecCCcccccCC--CCCCCCCcEEecccCcCCCcCChhh
Q 040192 20 MLPRMSSDIEEE-KEEHLVYAGAGLSETPDVRKWEKNVRRLSLMENQIENLSE--VPTCPYLRTLFLNNNAPLRRIDSGF 96 (386)
Q Consensus 20 ~~~~~~~~~~~~-~~~~l~~~~~~l~~~p~~~~~~~~L~~L~l~~~~~~~~~~--~~~~~~L~~L~l~~~~~~~~~~~~~ 96 (386)
.+.|.+..|.-. ....+.+.+.++..+|.. +++++++|++++|.+..++. ...+++|++|++++| .+..++..+
T Consensus 4 ~C~~~~~~C~c~~~~~~l~~~~~~l~~ip~~--~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~i~~~~ 80 (270)
T 2o6q_A 4 LCKKDGGVCSCNNNKNSVDCSSKKLTAIPSN--IPADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDN-KLQTLPAGI 80 (270)
T ss_dssp CBGGGTCSBEEETTTTEEECTTSCCSSCCSC--CCTTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSS-CCSCCCTTT
T ss_pred cCCCCCCCCEeCCCCCEEEccCCCCCccCCC--CCCCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCC-ccCeeChhh
Confidence 444655555432 356788888888888752 22378889998888888665 378888888888888 777777776
Q ss_pred hcCCCcCceecccCCccccccc-hhhcCCCccCEEEcCCCCCCcccH-hhhccCCCCEEEccCCccccccchhhhcCCCC
Q 040192 97 FQSMPRLNVLNLSGAIRLYSFP-LGISKLISLQHLDLSNTGIAELPK-ELNALVNLTCLNLEETWRLTVIPRRLISSFSS 174 (386)
Q Consensus 97 ~~~l~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~~~i~~l~~-~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~ 174 (386)
+..+++|++|++++| .+..++ ..+..+++|++|++++|.++.++. .+..+++|+.|++++| .+..++...+..+++
T Consensus 81 ~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~ 158 (270)
T 2o6q_A 81 FKELKNLETLWVTDN-KLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYN-ELQSLPKGVFDKLTS 158 (270)
T ss_dssp TSSCTTCCEEECCSS-CCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTT
T ss_pred hcCCCCCCEEECCCC-cCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCC-cCCccCHhHccCCcc
Confidence 788888888888888 777665 355778888888888888876654 4577888888888888 556666655777888
Q ss_pred CcEEEEeccCCccccCCCcCcccccccceeecCCccccccccccCCcEEEeeccCCccchhcccccccccCccccccCcc
Q 040192 175 LHVLRIFGSGYSYSDGMIGNGEFEQLCGFRRSKSLDVSALADLKRLNRLKIAECYGLAELKMDYKSVVQNTGQSFVFHSL 254 (386)
Q Consensus 175 L~~L~l~~~~~~~~~~~~~l~~L~~L~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L 254 (386)
|++|++++|.+.... ...+..+++|+.|++++|+... ++...+. .+++|
T Consensus 159 L~~L~L~~n~l~~~~---------------------~~~~~~l~~L~~L~L~~N~l~~-~~~~~~~---------~l~~L 207 (270)
T 2o6q_A 159 LKELRLYNNQLKRVP---------------------EGAFDKLTELKTLKLDNNQLKR-VPEGAFD---------SLEKL 207 (270)
T ss_dssp CCEEECCSSCCSCCC---------------------TTTTTTCTTCCEEECCSSCCSC-CCTTTTT---------TCTTC
T ss_pred cceeEecCCcCcEeC---------------------hhHhccCCCcCEEECCCCcCCc-CCHHHhc---------cccCC
Confidence 888888877665541 1224456677777777775432 3333333 56677
Q ss_pred cEEEecCCC
Q 040192 255 KKFQISYCK 263 (386)
Q Consensus 255 ~~L~l~~~~ 263 (386)
+.|++++|+
T Consensus 208 ~~L~l~~N~ 216 (270)
T 2o6q_A 208 KMLQLQENP 216 (270)
T ss_dssp CEEECCSSC
T ss_pred CEEEecCCC
Confidence 777777664
No 66
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.82 E-value=1.9e-18 Score=169.66 Aligned_cols=251 Identities=20% Similarity=0.167 Sum_probs=196.0
Q ss_pred CccEEEecCCcccccCCCCCCCCCcEEecccCcCCCcCChhhhcCCCcCceecccCCccccccchhhcCCCccCEEEcCC
Q 040192 55 NVRRLSLMENQIENLSEVPTCPYLRTLFLNNNAPLRRIDSGFFQSMPRLNVLNLSGAIRLYSFPLGISKLISLQHLDLSN 134 (386)
Q Consensus 55 ~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~ 134 (386)
+++.|+++++.+..+|.... ++|+.|++++| .+..+|. .+++|++|++++| .+..+|. .+++|++|++++
T Consensus 41 ~l~~L~ls~n~L~~lp~~l~-~~L~~L~L~~N-~l~~lp~----~l~~L~~L~Ls~N-~l~~lp~---~l~~L~~L~Ls~ 110 (622)
T 3g06_A 41 GNAVLNVGESGLTTLPDCLP-AHITTLVIPDN-NLTSLPA----LPPELRTLEVSGN-QLTSLPV---LPPGLLELSIFS 110 (622)
T ss_dssp CCCEEECCSSCCSCCCSCCC-TTCSEEEECSC-CCSCCCC----CCTTCCEEEECSC-CCSCCCC---CCTTCCEEEECS
T ss_pred CCcEEEecCCCcCccChhhC-CCCcEEEecCC-CCCCCCC----cCCCCCEEEcCCC-cCCcCCC---CCCCCCEEECcC
Confidence 68999999999998887533 89999999999 7888776 5799999999999 8888876 779999999999
Q ss_pred CCCCcccHhhhccCCCCEEEccCCccccccchhhhcCCCCCcEEEEeccCCccccCCCcCccccccc-ceeecCCccccc
Q 040192 135 TGIAELPKELNALVNLTCLNLEETWRLTVIPRRLISSFSSLHVLRIFGSGYSYSDGMIGNGEFEQLC-GFRRSKSLDVSA 213 (386)
Q Consensus 135 ~~i~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~L~-~~~~~~~~~~~~ 213 (386)
|.++.+|. .+++|+.|++++| .+..+|.. +++|++|++++|.+.... ..+.+|+.|. ..+.+.+. +
T Consensus 111 N~l~~l~~---~l~~L~~L~L~~N-~l~~lp~~----l~~L~~L~Ls~N~l~~l~--~~~~~L~~L~L~~N~l~~l-~-- 177 (622)
T 3g06_A 111 NPLTHLPA---LPSGLCKLWIFGN-QLTSLPVL----PPGLQELSVSDNQLASLP--ALPSELCKLWAYNNQLTSL-P-- 177 (622)
T ss_dssp CCCCCCCC---CCTTCCEEECCSS-CCSCCCCC----CTTCCEEECCSSCCSCCC--CCCTTCCEEECCSSCCSCC-C--
T ss_pred CcCCCCCC---CCCCcCEEECCCC-CCCcCCCC----CCCCCEEECcCCcCCCcC--CccCCCCEEECCCCCCCCC-c--
Confidence 99999886 5789999999999 56677763 489999999999888752 3445666665 22222221 1
Q ss_pred cccccCCcEEEeeccCCccchhcccccccccCccccccCcccEEEecCCCCCCccccccCCCCCcEEeecCCCccchhhc
Q 040192 214 LADLKRLNRLKIAECYGLAELKMDYKSVVQNTGQSFVFHSLKKFQISYCKELKDLTFLIFAPNLKSIEVDSCYALEEIVS 293 (386)
Q Consensus 214 l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~l~~l~~L~~L~l~~c~~~~~~~~ 293 (386)
..+++|+.|++++|+... + .. .+++|+.|++++| .++.++. .+++|+.|++++|. ++.++
T Consensus 178 -~~~~~L~~L~Ls~N~l~~-l--~~-----------~~~~L~~L~L~~N-~l~~l~~--~~~~L~~L~Ls~N~-L~~lp- 237 (622)
T 3g06_A 178 -MLPSGLQELSVSDNQLAS-L--PT-----------LPSELYKLWAYNN-RLTSLPA--LPSGLKELIVSGNR-LTSLP- 237 (622)
T ss_dssp -CCCTTCCEEECCSSCCSC-C--CC-----------CCTTCCEEECCSS-CCSSCCC--CCTTCCEEECCSSC-CSCCC-
T ss_pred -ccCCCCcEEECCCCCCCC-C--CC-----------ccchhhEEECcCC-cccccCC--CCCCCCEEEccCCc-cCcCC-
Confidence 346899999999986543 1 11 4689999999999 5776653 35899999999964 66652
Q ss_pred cCcccccCCCCcccccceeeeccccccccccCCCcCCCCccEEeecCcccCcCCCCCcccccCcceEEEch
Q 040192 294 DVPEVMMGNLNPFAQFHFLCFSYLPNLKSIYRKPLPFPHLKEMKVIHCLKLKKLPLDSNRAKERKIVIRGS 364 (386)
Q Consensus 294 ~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~i~~c~~L~~l~~~~~~~~~~l~i~~~~ 364 (386)
..+++|++|+++++ .+..++. .+++|+.|++++| +++.+|...... ..++.++..
T Consensus 238 ----------~~l~~L~~L~Ls~N-~L~~lp~---~~~~L~~L~Ls~N-~L~~lp~~l~~l-~~L~~L~L~ 292 (622)
T 3g06_A 238 ----------VLPSELKELMVSGN-RLTSLPM---LPSGLLSLSVYRN-QLTRLPESLIHL-SSETTVNLE 292 (622)
T ss_dssp ----------CCCTTCCEEECCSS-CCSCCCC---CCTTCCEEECCSS-CCCSCCGGGGGS-CTTCEEECC
T ss_pred ----------CCCCcCcEEECCCC-CCCcCCc---ccccCcEEeCCCC-CCCcCCHHHhhc-cccCEEEec
Confidence 35689999999999 7887775 6899999999996 888998765544 455555554
No 67
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.81 E-value=8.4e-19 Score=156.01 Aligned_cols=216 Identities=21% Similarity=0.218 Sum_probs=162.5
Q ss_pred ccEEEEcCCCCCCCCcccccccCccEEEecCCcccccCC--CCCCCCCcEEecccCcCCCcCChhhhcCCCcCceecccC
Q 040192 33 EEHLVYAGAGLSETPDVRKWEKNVRRLSLMENQIENLSE--VPTCPYLRTLFLNNNAPLRRIDSGFFQSMPRLNVLNLSG 110 (386)
Q Consensus 33 ~~~l~~~~~~l~~~p~~~~~~~~L~~L~l~~~~~~~~~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~ 110 (386)
...+.+.+..+..+|. .+++++++|++++|.+..++. ...+++|++|++++| .+..+++..+..+++|++|++++
T Consensus 9 ~~~~~c~~~~l~~ip~--~l~~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~L~~ 85 (276)
T 2z62_A 9 NITYQCMELNFYKIPD--NLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRC-EIQTIEDGAYQSLSHLSTLILTG 85 (276)
T ss_dssp TTEEECTTSCCSSCCS--SSCTTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTC-CCCEECTTTTTTCTTCCEEECTT
T ss_pred CceEEecCCCccccCC--CCCCCccEEECCCCcccccCHhHhccccCCcEEECCCC-cCCccCHHHccCCcCCCEEECCC
Confidence 4567788888888876 233379999999999998764 388999999999999 77777776688999999999999
Q ss_pred Cccccccc-hhhcCCCccCEEEcCCCCCCcccH-hhhccCCCCEEEccCCcccc-ccchhhhcCCCCCcEEEEeccCCcc
Q 040192 111 AIRLYSFP-LGISKLISLQHLDLSNTGIAELPK-ELNALVNLTCLNLEETWRLT-VIPRRLISSFSSLHVLRIFGSGYSY 187 (386)
Q Consensus 111 ~~~~~~~~-~~~~~l~~L~~L~l~~~~i~~l~~-~~~~l~~L~~L~l~~~~~~~-~~~~~~l~~l~~L~~L~l~~~~~~~ 187 (386)
| .+..++ ..+..+++|++|++++|.+..++. .++.+++|++|++++|.... .+|.. +..+++|++|++++|.+..
T Consensus 86 n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~-~~~l~~L~~L~Ls~N~l~~ 163 (276)
T 2z62_A 86 N-PIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEY-FSNLTNLEHLDLSSNKIQS 163 (276)
T ss_dssp C-CCCEECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGG-GGGCTTCCEEECCSSCCCE
T ss_pred C-ccCccChhhhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchh-hccCCCCCEEECCCCCCCc
Confidence 9 777664 678899999999999999887765 57889999999999994433 24554 8889999999999987776
Q ss_pred ccCCCcCcccccccceeecCCccccccccccCCc----EEEeeccCCccchhcccccccccCccccccCcccEEEecCCC
Q 040192 188 SDGMIGNGEFEQLCGFRRSKSLDVSALADLKRLN----RLKIAECYGLAELKMDYKSVVQNTGQSFVFHSLKKFQISYCK 263 (386)
Q Consensus 188 ~~~~~~l~~L~~L~~~~~~~~~~~~~l~~~~~L~----~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 263 (386)
.. ...+..+++|+ .|++++|.... .+...+ ...+|+.|++++|
T Consensus 164 ~~---------------------~~~~~~l~~L~~l~l~L~ls~n~l~~-~~~~~~----------~~~~L~~L~L~~n- 210 (276)
T 2z62_A 164 IY---------------------CTDLRVLHQMPLLNLSLDLSLNPMNF-IQPGAF----------KEIRLKELALDTN- 210 (276)
T ss_dssp EC---------------------GGGGHHHHTCTTCCEEEECCSSCCCE-ECTTSS----------CSCCEEEEECCSS-
T ss_pred CC---------------------HHHhhhhhhccccceeeecCCCcccc-cCcccc----------CCCcccEEECCCC-
Confidence 41 12233334444 78888876543 333333 3457888888888
Q ss_pred CCCcccc--ccCCCCCcEEeecCCC
Q 040192 264 ELKDLTF--LIFAPNLKSIEVDSCY 286 (386)
Q Consensus 264 ~l~~~~~--l~~l~~L~~L~l~~c~ 286 (386)
.++.++. +..+++|+.|++++++
T Consensus 211 ~l~~~~~~~~~~l~~L~~L~l~~N~ 235 (276)
T 2z62_A 211 QLKSVPDGIFDRLTSLQKIWLHTNP 235 (276)
T ss_dssp CCSCCCTTTTTTCCSCCEEECCSSC
T ss_pred ceeecCHhHhcccccccEEEccCCc
Confidence 4665543 4678888888888754
No 68
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.81 E-value=6.2e-19 Score=159.38 Aligned_cols=211 Identities=17% Similarity=0.240 Sum_probs=169.9
Q ss_pred EEEecCCcccccCCCCCCCCCcEEecccCcCCCcCChhhhcCCCcCceecccCCccccccchhhcCCCccCEEEcCCCCC
Q 040192 58 RLSLMENQIENLSEVPTCPYLRTLFLNNNAPLRRIDSGFFQSMPRLNVLNLSGAIRLYSFPLGISKLISLQHLDLSNTGI 137 (386)
Q Consensus 58 ~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i 137 (386)
.+.+..+.+.+......+++|+.|++++| .+..++. +..+++|++|++++| .+..++. +..+++|++|++++|.+
T Consensus 23 ~~~l~~~~~~~~~~~~~l~~L~~L~l~~~-~i~~l~~--~~~l~~L~~L~L~~n-~i~~~~~-~~~l~~L~~L~L~~n~l 97 (308)
T 1h6u_A 23 KIAAGKSNVTDTVTQADLDGITTLSAFGT-GVTTIEG--VQYLNNLIGLELKDN-QITDLAP-LKNLTKITELELSGNPL 97 (308)
T ss_dssp HHHTTCSSTTSEECHHHHHTCCEEECTTS-CCCCCTT--GGGCTTCCEEECCSS-CCCCCGG-GTTCCSCCEEECCSCCC
T ss_pred HHHhCCCCcCceecHHHcCCcCEEEeeCC-CccCchh--hhccCCCCEEEccCC-cCCCChh-HccCCCCCEEEccCCcC
Confidence 33444555555444467899999999999 7777764 789999999999999 8888876 88999999999999999
Q ss_pred CcccHhhhccCCCCEEEccCCccccccchhhhcCCCCCcEEEEeccCCccccCCCcCcccccccceeecCCccccccccc
Q 040192 138 AELPKELNALVNLTCLNLEETWRLTVIPRRLISSFSSLHVLRIFGSGYSYSDGMIGNGEFEQLCGFRRSKSLDVSALADL 217 (386)
Q Consensus 138 ~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~L~~~~~~~~~~~~~l~~~ 217 (386)
+.++ .+..+++|+.|++++| .+..++. +..+++|++|++++|.+... ..+..+
T Consensus 98 ~~~~-~~~~l~~L~~L~l~~n-~l~~~~~--l~~l~~L~~L~l~~n~l~~~-----------------------~~l~~l 150 (308)
T 1h6u_A 98 KNVS-AIAGLQSIKTLDLTST-QITDVTP--LAGLSNLQVLYLDLNQITNI-----------------------SPLAGL 150 (308)
T ss_dssp SCCG-GGTTCTTCCEEECTTS-CCCCCGG--GTTCTTCCEEECCSSCCCCC-----------------------GGGGGC
T ss_pred CCch-hhcCCCCCCEEECCCC-CCCCchh--hcCCCCCCEEECCCCccCcC-----------------------ccccCC
Confidence 9876 6888999999999999 5666765 89999999999999987765 125667
Q ss_pred cCCcEEEeeccCCccchhcccccccccCccccccCcccEEEecCCCCCCccccccCCCCCcEEeecCCCccchhhccCcc
Q 040192 218 KRLNRLKIAECYGLAELKMDYKSVVQNTGQSFVFHSLKKFQISYCKELKDLTFLIFAPNLKSIEVDSCYALEEIVSDVPE 297 (386)
Q Consensus 218 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~l~~l~~L~~L~l~~c~~~~~~~~~~~~ 297 (386)
++|+.|++++|+... ... +. .+++|+.|++++| .++.++.+..+++|++|++++|. ++++.
T Consensus 151 ~~L~~L~l~~n~l~~-~~~--l~---------~l~~L~~L~l~~n-~l~~~~~l~~l~~L~~L~L~~N~-l~~~~----- 211 (308)
T 1h6u_A 151 TNLQYLSIGNAQVSD-LTP--LA---------NLSKLTTLKADDN-KISDISPLASLPNLIEVHLKNNQ-ISDVS----- 211 (308)
T ss_dssp TTCCEEECCSSCCCC-CGG--GT---------TCTTCCEEECCSS-CCCCCGGGGGCTTCCEEECTTSC-CCBCG-----
T ss_pred CCccEEEccCCcCCC-Chh--hc---------CCCCCCEEECCCC-ccCcChhhcCCCCCCEEEccCCc-cCccc-----
Confidence 899999999996654 332 33 7899999999999 67888778899999999999965 66553
Q ss_pred cccCCCCcccccceeeecccccccccc
Q 040192 298 VMMGNLNPFAQFHFLCFSYLPNLKSIY 324 (386)
Q Consensus 298 ~~~~~~~~~~~L~~L~l~~~~~l~~~~ 324 (386)
.+..+++|+.|+++++ .+...+
T Consensus 212 ----~l~~l~~L~~L~l~~N-~i~~~~ 233 (308)
T 1h6u_A 212 ----PLANTSNLFIVTLTNQ-TITNQP 233 (308)
T ss_dssp ----GGTTCTTCCEEEEEEE-EEECCC
T ss_pred ----cccCCCCCCEEEccCC-eeecCC
Confidence 3467899999999998 455443
No 69
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.80 E-value=4e-20 Score=177.64 Aligned_cols=233 Identities=16% Similarity=0.117 Sum_probs=143.1
Q ss_pred ccEEEEcCCCCCCCC--cccccccCccEEEecCCcccccCCCCCCCCCcEEecccCcCCCcCChhhhcCCCcCceecccC
Q 040192 33 EEHLVYAGAGLSETP--DVRKWEKNVRRLSLMENQIENLSEVPTCPYLRTLFLNNNAPLRRIDSGFFQSMPRLNVLNLSG 110 (386)
Q Consensus 33 ~~~l~~~~~~l~~~p--~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~ 110 (386)
...+.+.+..+..++ .+..++ +|++|++++|.+.+.++...+++|++|++++| .+..++. .++|++|++++
T Consensus 36 L~~L~Ls~n~l~~~~~~~~~~l~-~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N-~l~~l~~-----~~~L~~L~L~~ 108 (487)
T 3oja_A 36 VKELDLSGNPLSQISAADLAPFT-KLELLNLSSNVLYETLDLESLSTLRTLDLNNN-YVQELLV-----GPSIETLHAAN 108 (487)
T ss_dssp CCEEECCSSCCCCCCGGGGTTCT-TCCEEECTTSCCEEEEECTTCTTCCEEECCSS-EEEEEEE-----CTTCCEEECCS
T ss_pred ccEEEeeCCcCCCCCHHHHhCCC-CCCEEEeeCCCCCCCcccccCCCCCEEEecCC-cCCCCCC-----CCCcCEEECcC
Confidence 566777777776664 366666 77777777777776555667777777777777 5554432 36777777777
Q ss_pred CccccccchhhcCCCccCEEEcCCCCCCccc-HhhhccCCCCEEEccCCccccccchhhhcCCCCCcEEEEeccCCcccc
Q 040192 111 AIRLYSFPLGISKLISLQHLDLSNTGIAELP-KELNALVNLTCLNLEETWRLTVIPRRLISSFSSLHVLRIFGSGYSYSD 189 (386)
Q Consensus 111 ~~~~~~~~~~~~~l~~L~~L~l~~~~i~~l~-~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~ 189 (386)
| .+..++. ..+++|+.|++++|.++.++ ..++.+++|+.|++++|......|..+...+++|+.|++++|.+.+.
T Consensus 109 N-~l~~~~~--~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~- 184 (487)
T 3oja_A 109 N-NISRVSC--SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV- 184 (487)
T ss_dssp S-CCCCEEE--CCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE-
T ss_pred C-cCCCCCc--cccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccccc-
Confidence 7 6665543 24567777777777777553 35666777777777777444434444223677777777777766554
Q ss_pred CCCcCcccccccceeecCCccccccccccCCcEEEeeccCCccchhcccccccccCccccccCcccEEEecCCCCCCccc
Q 040192 190 GMIGNGEFEQLCGFRRSKSLDVSALADLKRLNRLKIAECYGLAELKMDYKSVVQNTGQSFVFHSLKKFQISYCKELKDLT 269 (386)
Q Consensus 190 ~~~~l~~L~~L~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~ 269 (386)
.....+++|+.|++++|.... ++.. +. .+++|+.|++++| .++.++
T Consensus 185 ----------------------~~~~~l~~L~~L~Ls~N~l~~-~~~~-~~---------~l~~L~~L~Ls~N-~l~~lp 230 (487)
T 3oja_A 185 ----------------------KGQVVFAKLKTLDLSSNKLAF-MGPE-FQ---------SAAGVTWISLRNN-KLVLIE 230 (487)
T ss_dssp ----------------------ECCCCCTTCCEEECCSSCCCE-ECGG-GG---------GGTTCSEEECTTS-CCCEEC
T ss_pred ----------------------cccccCCCCCEEECCCCCCCC-CCHh-Hc---------CCCCccEEEecCC-cCcccc
Confidence 112235677777777775543 3222 22 5677777777777 345443
Q ss_pred -cccCCCCCcEEeecCCCccchhhccCcccccCCCCcccccceeeeccc
Q 040192 270 -FLIFAPNLKSIEVDSCYALEEIVSDVPEVMMGNLNPFAQFHFLCFSYL 317 (386)
Q Consensus 270 -~l~~l~~L~~L~l~~c~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 317 (386)
.+..+++|+.|++++|+....... ..+..+++|+.+++..+
T Consensus 231 ~~l~~l~~L~~L~l~~N~l~c~~~~-------~~~~~l~~L~~l~~~~~ 272 (487)
T 3oja_A 231 KALRFSQNLEHFDLRGNGFHCGTLR-------DFFSKNQRVQTVAKQTV 272 (487)
T ss_dssp TTCCCCTTCCEEECTTCCBCHHHHH-------HHHTTCHHHHHHHHHHH
T ss_pred hhhccCCCCCEEEcCCCCCcCcchH-------HHHHhCCCCcEEecccc
Confidence 355667777777777553322222 14455666777666543
No 70
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.80 E-value=8e-19 Score=161.62 Aligned_cols=239 Identities=20% Similarity=0.275 Sum_probs=165.8
Q ss_pred ccEEEEcCCCCCCCCcccccccCccEEEecCCcccccCCC--CCCCCCcEEecccCcCCCcCChhhhcCCCcCceec-cc
Q 040192 33 EEHLVYAGAGLSETPDVRKWEKNVRRLSLMENQIENLSEV--PTCPYLRTLFLNNNAPLRRIDSGFFQSMPRLNVLN-LS 109 (386)
Q Consensus 33 ~~~l~~~~~~l~~~p~~~~~~~~L~~L~l~~~~~~~~~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~-l~ 109 (386)
...+.|.+.+++++|. .+++++++|++++|.++.++.. ..+++|++|++++|...+.++..+|.++++++.+. +.
T Consensus 11 ~~~v~C~~~~Lt~iP~--~l~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~ 88 (350)
T 4ay9_X 11 NRVFLCQESKVTEIPS--DLPRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEK 88 (350)
T ss_dssp TTEEEEESTTCCSCCT--TCCTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEE
T ss_pred CCEEEecCCCCCccCc--CcCCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhccc
Confidence 3568899999999986 2344899999999999998864 88999999999999445677877788999887654 44
Q ss_pred CCcccccc-chhhcCCCccCEEEcCCCCCCcccH-hhhccCCCCEEEccCCccccccchhhhcCCC-CCcEEEEeccCCc
Q 040192 110 GAIRLYSF-PLGISKLISLQHLDLSNTGIAELPK-ELNALVNLTCLNLEETWRLTVIPRRLISSFS-SLHVLRIFGSGYS 186 (386)
Q Consensus 110 ~~~~~~~~-~~~~~~l~~L~~L~l~~~~i~~l~~-~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~-~L~~L~l~~~~~~ 186 (386)
.+ .+..+ |..+..+++|++|++++|.+..+|. .+....++..+++.++..+..++...+..+. .++.|++++|.+.
T Consensus 89 ~N-~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~ 167 (350)
T 4ay9_X 89 AN-NLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQ 167 (350)
T ss_dssp ET-TCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCC
T ss_pred CC-cccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhcccccccc
Confidence 55 78877 5678999999999999999987764 3345667888888877677888876566664 6889999999887
Q ss_pred cccCCCcCcccccccceeecCCccccccccccCCcEEEeeccCCccchhcccccccccCccccccCcccEEEecCCCCCC
Q 040192 187 YSDGMIGNGEFEQLCGFRRSKSLDVSALADLKRLNRLKIAECYGLAELKMDYKSVVQNTGQSFVFHSLKKFQISYCKELK 266 (386)
Q Consensus 187 ~~~~~~~l~~L~~L~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~ 266 (386)
..... .....+|+.+.+.+++.+..++...+. .+++|+.|++++| .++
T Consensus 168 ~i~~~----------------------~f~~~~L~~l~l~~~n~l~~i~~~~f~---------~l~~L~~LdLs~N-~l~ 215 (350)
T 4ay9_X 168 EIHNS----------------------AFNGTQLDELNLSDNNNLEELPNDVFH---------GASGPVILDISRT-RIH 215 (350)
T ss_dssp EECTT----------------------SSTTEEEEEEECTTCTTCCCCCTTTTT---------TEECCSEEECTTS-CCC
T ss_pred CCChh----------------------hccccchhHHhhccCCcccCCCHHHhc---------cCcccchhhcCCC-CcC
Confidence 65211 112235566666554444444444443 4566666666666 455
Q ss_pred ccccccCCCCCcEEeecCCCccchhhccCcccccCCCCcccccceeeecc
Q 040192 267 DLTFLIFAPNLKSIEVDSCYALEEIVSDVPEVMMGNLNPFAQFHFLCFSY 316 (386)
Q Consensus 267 ~~~~l~~l~~L~~L~l~~c~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~ 316 (386)
.++. ..+.+|++|.+.++..++.+ ..+..+++|+.+++.+
T Consensus 216 ~lp~-~~~~~L~~L~~l~~~~l~~l---------P~l~~l~~L~~l~l~~ 255 (350)
T 4ay9_X 216 SLPS-YGLENLKKLRARSTYNLKKL---------PTLEKLVALMEASLTY 255 (350)
T ss_dssp CCCS-SSCTTCCEEECTTCTTCCCC---------CCTTTCCSCCEEECSC
T ss_pred ccCh-hhhccchHhhhccCCCcCcC---------CCchhCcChhhCcCCC
Confidence 5443 23555666666655555554 2344556666666543
No 71
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.80 E-value=3.2e-20 Score=168.20 Aligned_cols=238 Identities=18% Similarity=0.171 Sum_probs=163.7
Q ss_pred CccEEEecCCcccccCCC-CCCCCCcEEecccCcCCC--cCChhhhc-------CCCcCceecccCCcccc-ccchhh--
Q 040192 55 NVRRLSLMENQIENLSEV-PTCPYLRTLFLNNNAPLR--RIDSGFFQ-------SMPRLNVLNLSGAIRLY-SFPLGI-- 121 (386)
Q Consensus 55 ~L~~L~l~~~~~~~~~~~-~~~~~L~~L~l~~~~~~~--~~~~~~~~-------~l~~L~~L~l~~~~~~~-~~~~~~-- 121 (386)
+++.+++++|.+ .+|.. ... |+.|++++| .+. .++.. +. .+++|++|++++| .+. .+|..+
T Consensus 44 ~L~~l~l~~n~l-~~p~~~~~~--L~~L~L~~n-~l~~~~~~~~-~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~ 117 (312)
T 1wwl_A 44 SLEYLLKRVDTE-ADLGQFTDI--IKSLSLKRL-TVRAARIPSR-ILFGALRVLGISGLQELTLENL-EVTGTAPPPLLE 117 (312)
T ss_dssp ECTTHHHHCCTT-CCCHHHHHH--HHHCCCCEE-EEEEEECBHH-HHHHHHHHHTTSCCCEEEEEEE-BCBSCCCCCSSS
T ss_pred CceeEeeccccc-ccHHHHHHH--Hhhcccccc-cccCCCcCHH-HHHHHHHhcCcCCccEEEccCC-cccchhHHHHHH
Confidence 677788888877 55543 222 777888877 443 34433 22 6888888888888 666 456655
Q ss_pred cCCCccCEEEcCCCCCCcccHhhhcc-----CCCCEEEccCCccccccchhhhcCCCCCcEEEEeccCCccccCCCcCcc
Q 040192 122 SKLISLQHLDLSNTGIAELPKELNAL-----VNLTCLNLEETWRLTVIPRRLISSFSSLHVLRIFGSGYSYSDGMIGNGE 196 (386)
Q Consensus 122 ~~l~~L~~L~l~~~~i~~l~~~~~~l-----~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~ 196 (386)
+.+++|++|++++|.++.+|..++.+ ++|++|++++| .+..++...++.+++|++|++++|.+.+...
T Consensus 118 ~~l~~L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~------ 190 (312)
T 1wwl_A 118 ATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQA-HSLNFSCEQVRVFPALSTLDLSDNPELGERG------ 190 (312)
T ss_dssp CCSCCCSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEESC-SCCCCCTTTCCCCSSCCEEECCSCTTCHHHH------
T ss_pred hcCCCccEEEccCCCCcchhHHHHHHHHhhcCCCcEEEeeCC-CCccchHHHhccCCCCCEEECCCCCcCcchH------
Confidence 78888888888888888777666666 88888888888 4455554448888888888888887554200
Q ss_pred cccccceeecCCccccc--cccccCCcEEEeeccCCcc--chhcccccccccCccccccCcccEEEecCCCCCCcc---c
Q 040192 197 FEQLCGFRRSKSLDVSA--LADLKRLNRLKIAECYGLA--ELKMDYKSVVQNTGQSFVFHSLKKFQISYCKELKDL---T 269 (386)
Q Consensus 197 L~~L~~~~~~~~~~~~~--l~~~~~L~~L~l~~~~~~~--~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~---~ 269 (386)
.+.. +..+++|++|++++|+... ......+. .+++|+.|++++|. ++.. +
T Consensus 191 -------------~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~---------~l~~L~~L~Ls~N~-l~~~~~~~ 247 (312)
T 1wwl_A 191 -------------LISALCPLKFPTLQVLALRNAGMETPSGVCSALAA---------ARVQLQGLDLSHNS-LRDAAGAP 247 (312)
T ss_dssp -------------HHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHH---------TTCCCSEEECTTSC-CCSSCCCS
T ss_pred -------------HHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHh---------cCCCCCEEECCCCc-CCcccchh
Confidence 0111 2557888888888886552 12222222 56889999999884 5542 3
Q ss_pred cccCCCCCcEEeecCCCccchhhccCcccccCCCCcccccceeeeccccccccccCCCcCCCCccEEeecCc
Q 040192 270 FLIFAPNLKSIEVDSCYALEEIVSDVPEVMMGNLNPFAQFHFLCFSYLPNLKSIYRKPLPFPHLKEMKVIHC 341 (386)
Q Consensus 270 ~l~~l~~L~~L~l~~c~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~i~~c 341 (386)
....+++|+.|++++|. ++.++. .+. ++|++|+++++ .+..++. ...+++|+.|++++.
T Consensus 248 ~~~~l~~L~~L~Ls~N~-l~~ip~--------~~~--~~L~~L~Ls~N-~l~~~p~-~~~l~~L~~L~L~~N 306 (312)
T 1wwl_A 248 SCDWPSQLNSLNLSFTG-LKQVPK--------GLP--AKLSVLDLSYN-RLDRNPS-PDELPQVGNLSLKGN 306 (312)
T ss_dssp CCCCCTTCCEEECTTSC-CSSCCS--------SCC--SEEEEEECCSS-CCCSCCC-TTTSCEEEEEECTTC
T ss_pred hhhhcCCCCEEECCCCc-cChhhh--------hcc--CCceEEECCCC-CCCCChh-HhhCCCCCEEeccCC
Confidence 34557889999998855 665543 222 78999999988 6777765 667888888888874
No 72
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.79 E-value=4.3e-19 Score=157.53 Aligned_cols=140 Identities=24% Similarity=0.394 Sum_probs=82.5
Q ss_pred CCCCCCcccccccCccEEEecCCcccccCCCCCCCCCcEEecccCcCCCcCChhhhcCCCcCceecccCCccccccch-h
Q 040192 42 GLSETPDVRKWEKNVRRLSLMENQIENLSEVPTCPYLRTLFLNNNAPLRRIDSGFFQSMPRLNVLNLSGAIRLYSFPL-G 120 (386)
Q Consensus 42 ~l~~~p~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~-~ 120 (386)
.+.+......++ +++.|.+.++.+..++....+++|+.|++++| .+..++ .+..+++|++|++++| .+..++. .
T Consensus 30 ~~~~~~~~~~l~-~L~~L~l~~~~i~~~~~l~~l~~L~~L~l~~n-~l~~~~--~l~~l~~L~~L~L~~n-~l~~~~~~~ 104 (272)
T 3rfs_A 30 SVTDAVTQNELN-SIDQIIANNSDIKSVQGIQYLPNVRYLALGGN-KLHDIS--ALKELTNLTYLILTGN-QLQSLPNGV 104 (272)
T ss_dssp CTTSEECHHHHT-TCCEEECTTSCCCCCTTGGGCTTCCEEECTTS-CCCCCG--GGTTCTTCCEEECTTS-CCCCCCTTT
T ss_pred cccccccccccc-ceeeeeeCCCCcccccccccCCCCcEEECCCC-CCCCch--hhcCCCCCCEEECCCC-ccCccChhH
Confidence 344444455556 67777777776666665566666777777666 454443 2556666666666666 5555432 3
Q ss_pred hcCCCccCEEEcCCCCCCcccHh-hhccCCCCEEEccCCccccccchhhhcCCCCCcEEEEeccCCcc
Q 040192 121 ISKLISLQHLDLSNTGIAELPKE-LNALVNLTCLNLEETWRLTVIPRRLISSFSSLHVLRIFGSGYSY 187 (386)
Q Consensus 121 ~~~l~~L~~L~l~~~~i~~l~~~-~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~ 187 (386)
+..+++|++|++++|.++.++.. ++.+++|+.|++++| .+..++...+..+++|+.|++++|.+..
T Consensus 105 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~ 171 (272)
T 3rfs_A 105 FDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHN-QLQSLPKGVFDKLTNLTELDLSYNQLQS 171 (272)
T ss_dssp TTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCCC
T ss_pred hcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCC-ccCccCHHHhccCccCCEEECCCCCcCc
Confidence 45666666666666666655433 455666666666666 3444444445566666666666655443
No 73
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.79 E-value=1.1e-18 Score=154.95 Aligned_cols=223 Identities=16% Similarity=0.201 Sum_probs=167.7
Q ss_pred CccEEEecCCcccccCCCCCCCCCcEEecccCcCCCcCChhhhcCCCcCceecccCCccccccchhhcCCCccCEEEcCC
Q 040192 55 NVRRLSLMENQIENLSEVPTCPYLRTLFLNNNAPLRRIDSGFFQSMPRLNVLNLSGAIRLYSFPLGISKLISLQHLDLSN 134 (386)
Q Consensus 55 ~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~ 134 (386)
++..+.+..+.+.+......+++|+.|++.++ .+..++. +..+++|++|++++| .+..++ .+..+++|++|++++
T Consensus 20 ~l~~l~l~~~~~~~~~~~~~l~~L~~L~l~~~-~i~~~~~--l~~l~~L~~L~l~~n-~l~~~~-~l~~l~~L~~L~L~~ 94 (272)
T 3rfs_A 20 ETIKANLKKKSVTDAVTQNELNSIDQIIANNS-DIKSVQG--IQYLPNVRYLALGGN-KLHDIS-ALKELTNLTYLILTG 94 (272)
T ss_dssp HHHHHHHTCSCTTSEECHHHHTTCCEEECTTS-CCCCCTT--GGGCTTCCEEECTTS-CCCCCG-GGTTCTTCCEEECTT
T ss_pred HHHHHHhcCcccccccccccccceeeeeeCCC-Ccccccc--cccCCCCcEEECCCC-CCCCch-hhcCCCCCCEEECCC
Confidence 45556666776666555578899999999998 6776654 778999999999998 777764 678899999999999
Q ss_pred CCCCcccHh-hhccCCCCEEEccCCccccccchhhhcCCCCCcEEEEeccCCccccCCCcCcccccccceeecCCccccc
Q 040192 135 TGIAELPKE-LNALVNLTCLNLEETWRLTVIPRRLISSFSSLHVLRIFGSGYSYSDGMIGNGEFEQLCGFRRSKSLDVSA 213 (386)
Q Consensus 135 ~~i~~l~~~-~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~L~~~~~~~~~~~~~ 213 (386)
|.++.++.. +..+++|++|++++| .+..++...+..+++|+.|++++|.+... ....
T Consensus 95 n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n~l~~~---------------------~~~~ 152 (272)
T 3rfs_A 95 NQLQSLPNGVFDKLTNLKELVLVEN-QLQSLPDGVFDKLTNLTYLNLAHNQLQSL---------------------PKGV 152 (272)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECTTS-CCCCCCTTTTTTCTTCCEEECCSSCCCCC---------------------CTTT
T ss_pred CccCccChhHhcCCcCCCEEECCCC-cCCccCHHHhccCCCCCEEECCCCccCcc---------------------CHHH
Confidence 999877654 678899999999999 55666666578899999999999877654 1223
Q ss_pred cccccCCcEEEeeccCCccchhcccccccccCccccccCcccEEEecCCCCCCcccc--ccCCCCCcEEeecCCCccchh
Q 040192 214 LADLKRLNRLKIAECYGLAELKMDYKSVVQNTGQSFVFHSLKKFQISYCKELKDLTF--LIFAPNLKSIEVDSCYALEEI 291 (386)
Q Consensus 214 l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~--l~~l~~L~~L~l~~c~~~~~~ 291 (386)
+..+++|+.|++++|+... .+...+. .+++|+.|++++| .++.++. +..+++|+.|++++|+
T Consensus 153 ~~~l~~L~~L~l~~n~l~~-~~~~~~~---------~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N~----- 216 (272)
T 3rfs_A 153 FDKLTNLTELDLSYNQLQS-LPEGVFD---------KLTQLKDLRLYQN-QLKSVPDGVFDRLTSLQYIWLHDNP----- 216 (272)
T ss_dssp TTTCTTCCEEECCSSCCCC-CCTTTTT---------TCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSSC-----
T ss_pred hccCccCCEEECCCCCcCc-cCHHHhc---------CCccCCEEECCCC-cCCccCHHHHhCCcCCCEEEccCCC-----
Confidence 4567889999999986553 4444443 6889999999998 4665543 6788999999999864
Q ss_pred hccCcccccCCCCcccccceeeeccccccccccCCCcCC
Q 040192 292 VSDVPEVMMGNLNPFAQFHFLCFSYLPNLKSIYRKPLPF 330 (386)
Q Consensus 292 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~ 330 (386)
..+.+|+|+.|++..+..-..++...+.+
T Consensus 217 ----------~~~~~~~l~~l~~~~n~~~g~ip~~~~~~ 245 (272)
T 3rfs_A 217 ----------WDCTCPGIRYLSEWINKHSGVVRNSAGSV 245 (272)
T ss_dssp ----------BCCCTTTTHHHHHHHHHTGGGBBCTTSCB
T ss_pred ----------ccccCcHHHHHHHHHHhCCCcccCccccc
Confidence 22346788888888775445566554443
No 74
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.79 E-value=3.4e-18 Score=153.06 Aligned_cols=198 Identities=20% Similarity=0.174 Sum_probs=114.0
Q ss_pred ccccCccEEEecCCcccccCCCCCCCCCcEEecccCcCCCcCChhhhcCCCcCceecccCCccccccchhhcCCCccCEE
Q 040192 51 KWEKNVRRLSLMENQIENLSEVPTCPYLRTLFLNNNAPLRRIDSGFFQSMPRLNVLNLSGAIRLYSFPLGISKLISLQHL 130 (386)
Q Consensus 51 ~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L 130 (386)
.++ ++++++++++.+..+|... .++++.|++++| .+..+++..+..+++|++|++++| .+..++.. +.+++|++|
T Consensus 8 ~l~-~l~~l~~~~~~l~~ip~~~-~~~l~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~-~~l~~L~~L 82 (290)
T 1p9a_G 8 KVA-SHLEVNCDKRNLTALPPDL-PKDTTILHLSEN-LLYTFSLATLMPYTRLTQLNLDRA-ELTKLQVD-GTLPVLGTL 82 (290)
T ss_dssp CST-TCCEEECTTSCCSSCCSCC-CTTCCEEECTTS-CCSEEEGGGGTTCTTCCEEECTTS-CCCEEECC-SCCTTCCEE
T ss_pred ccC-CccEEECCCCCCCcCCCCC-CCCCCEEEcCCC-cCCccCHHHhhcCCCCCEEECCCC-ccCcccCC-CCCCcCCEE
Confidence 344 5666666666666655431 256666666666 555554444666666666666666 55555432 556666666
Q ss_pred EcCCCCCCcccHhhhccCCCCEEEccCCccccccchhhhcCCCCCcEEEEeccCCccccCCCcCcccccccceeecCCcc
Q 040192 131 DLSNTGIAELPKELNALVNLTCLNLEETWRLTVIPRRLISSFSSLHVLRIFGSGYSYSDGMIGNGEFEQLCGFRRSKSLD 210 (386)
Q Consensus 131 ~l~~~~i~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~L~~~~~~~~~~ 210 (386)
++++|.++.+|..+..+++|+.|++++| .+..++...+..+++|+.|++++|.+... .
T Consensus 83 ~Ls~N~l~~l~~~~~~l~~L~~L~l~~N-~l~~l~~~~~~~l~~L~~L~L~~N~l~~~---------------------~ 140 (290)
T 1p9a_G 83 DLSHNQLQSLPLLGQTLPALTVLDVSFN-RLTSLPLGALRGLGELQELYLKGNELKTL---------------------P 140 (290)
T ss_dssp ECCSSCCSSCCCCTTTCTTCCEEECCSS-CCCCCCSSTTTTCTTCCEEECTTSCCCCC---------------------C
T ss_pred ECCCCcCCcCchhhccCCCCCEEECCCC-cCcccCHHHHcCCCCCCEEECCCCCCCcc---------------------C
Confidence 6666666666666666666666666666 44455544466666666666666655543 1
Q ss_pred ccccccccCCcEEEeeccCCccchhcccccccccCccccccCcccEEEecCCCCCCccc-cccCCCCCcEEeecCCC
Q 040192 211 VSALADLKRLNRLKIAECYGLAELKMDYKSVVQNTGQSFVFHSLKKFQISYCKELKDLT-FLIFAPNLKSIEVDSCY 286 (386)
Q Consensus 211 ~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~-~l~~l~~L~~L~l~~c~ 286 (386)
...+..+++|+.|++++|+... ++...+. .+++|+.|++++| .++.++ .+..+++|+.++|.+++
T Consensus 141 ~~~~~~l~~L~~L~L~~N~l~~-l~~~~~~---------~l~~L~~L~L~~N-~l~~ip~~~~~~~~L~~l~L~~Np 206 (290)
T 1p9a_G 141 PGLLTPTPKLEKLSLANNNLTE-LPAGLLN---------GLENLDTLLLQEN-SLYTIPKGFFGSHLLPFAFLHGNP 206 (290)
T ss_dssp TTTTTTCTTCCEEECTTSCCSC-CCTTTTT---------TCTTCCEEECCSS-CCCCCCTTTTTTCCCSEEECCSCC
T ss_pred hhhcccccCCCEEECCCCcCCc-cCHHHhc---------CcCCCCEEECCCC-cCCccChhhcccccCCeEEeCCCC
Confidence 1223445666666666664432 3333332 4666666666666 344443 24445566666666544
No 75
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.79 E-value=7.2e-18 Score=149.47 Aligned_cols=196 Identities=19% Similarity=0.257 Sum_probs=140.3
Q ss_pred CccEEEecCCcccccCCCCCCCCCcEEecccCcCCCcCChhhhcCCCcCceecccCCccccccch-hhcCCCccCEEEcC
Q 040192 55 NVRRLSLMENQIENLSEVPTCPYLRTLFLNNNAPLRRIDSGFFQSMPRLNVLNLSGAIRLYSFPL-GISKLISLQHLDLS 133 (386)
Q Consensus 55 ~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~-~~~~l~~L~~L~l~ 133 (386)
+.++++++++.+..+|... .++++.|++++| .+..++...+..+++|++|++++| .+..++. .+..+++|++|+++
T Consensus 17 ~~~~l~~~~~~l~~ip~~~-~~~l~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n-~l~~i~~~~~~~l~~L~~L~l~ 93 (270)
T 2o6q_A 17 NKNSVDCSSKKLTAIPSNI-PADTKKLDLQSN-KLSSLPSKAFHRLTKLRLLYLNDN-KLQTLPAGIFKELKNLETLWVT 93 (270)
T ss_dssp TTTEEECTTSCCSSCCSCC-CTTCSEEECCSS-CCSCCCTTSSSSCTTCCEEECCSS-CCSCCCTTTTSSCTTCCEEECC
T ss_pred CCCEEEccCCCCCccCCCC-CCCCCEEECcCC-CCCeeCHHHhcCCCCCCEEECCCC-ccCeeChhhhcCCCCCCEEECC
Confidence 5678888888888876542 267888888888 777777666788888888888888 7777754 45778888888888
Q ss_pred CCCCCcccH-hhhccCCCCEEEccCCccccccchhhhcCCCCCcEEEEeccCCccccCCCcCcccccccceeecCCcccc
Q 040192 134 NTGIAELPK-ELNALVNLTCLNLEETWRLTVIPRRLISSFSSLHVLRIFGSGYSYSDGMIGNGEFEQLCGFRRSKSLDVS 212 (386)
Q Consensus 134 ~~~i~~l~~-~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~L~~~~~~~~~~~~ 212 (386)
+|.++.++. .+..+++|+.|++++| .+..++...+..+++|+.|++++|.+.... ..
T Consensus 94 ~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~---------------------~~ 151 (270)
T 2o6q_A 94 DNKLQALPIGVFDQLVNLAELRLDRN-QLKSLPPRVFDSLTKLTYLSLGYNELQSLP---------------------KG 151 (270)
T ss_dssp SSCCCCCCTTTTTTCSSCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCCCCC---------------------TT
T ss_pred CCcCCcCCHhHcccccCCCEEECCCC-ccCeeCHHHhCcCcCCCEEECCCCcCCccC---------------------Hh
Confidence 888887764 4567888888888888 455666555778888888888888666541 12
Q ss_pred ccccccCCcEEEeeccCCccchhcccccccccCccccccCcccEEEecCCCCCCcccc--ccCCCCCcEEeecCCC
Q 040192 213 ALADLKRLNRLKIAECYGLAELKMDYKSVVQNTGQSFVFHSLKKFQISYCKELKDLTF--LIFAPNLKSIEVDSCY 286 (386)
Q Consensus 213 ~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~--l~~l~~L~~L~l~~c~ 286 (386)
.+..+++|+.|++++|+... ++...+. .+++|+.|++++| .++.++. +..+++|+.|++++++
T Consensus 152 ~~~~l~~L~~L~L~~n~l~~-~~~~~~~---------~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N~ 216 (270)
T 2o6q_A 152 VFDKLTSLKELRLYNNQLKR-VPEGAFD---------KLTELKTLKLDNN-QLKRVPEGAFDSLEKLKMLQLQENP 216 (270)
T ss_dssp TTTTCTTCCEEECCSSCCSC-CCTTTTT---------TCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred HccCCcccceeEecCCcCcE-eChhHhc---------cCCCcCEEECCCC-cCCcCCHHHhccccCCCEEEecCCC
Confidence 24556778888888775543 3333333 5677888888877 4555432 5667777778777754
No 76
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.79 E-value=4.1e-18 Score=151.56 Aligned_cols=218 Identities=20% Similarity=0.220 Sum_probs=155.0
Q ss_pred EEEecCCcccccCCCCCCCCCcEEecccCcCCCcCChhhhcCCCcCceecccCCccccccc-hhhcCCCccCEEEcCCCC
Q 040192 58 RLSLMENQIENLSEVPTCPYLRTLFLNNNAPLRRIDSGFFQSMPRLNVLNLSGAIRLYSFP-LGISKLISLQHLDLSNTG 136 (386)
Q Consensus 58 ~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~~~ 136 (386)
.+...+..+..+|.. -.++|+.|++++| .+..++...+..+++|++|++++| .+..++ ..+..+++|++|++++|.
T Consensus 11 ~~~c~~~~l~~ip~~-l~~~l~~L~ls~n-~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~L~~n~ 87 (276)
T 2z62_A 11 TYQCMELNFYKIPDN-LPFSTKNLDLSFN-PLRHLGSYSFFSFPELQVLDLSRC-EIQTIEDGAYQSLSHLSTLILTGNP 87 (276)
T ss_dssp EEECTTSCCSSCCSS-SCTTCCEEECTTC-CCCEECTTTTTTCTTCSEEECTTC-CCCEECTTTTTTCTTCCEEECTTCC
T ss_pred eEEecCCCccccCCC-CCCCccEEECCCC-cccccCHhHhccccCCcEEECCCC-cCCccCHHHccCCcCCCEEECCCCc
Confidence 445555566666553 2357999999998 777777655888999999999998 777664 467889999999999999
Q ss_pred CCccc-HhhhccCCCCEEEccCCccccccchhhhcCCCCCcEEEEeccCCccccCCCcCcccccccceeecCCccccccc
Q 040192 137 IAELP-KELNALVNLTCLNLEETWRLTVIPRRLISSFSSLHVLRIFGSGYSYSDGMIGNGEFEQLCGFRRSKSLDVSALA 215 (386)
Q Consensus 137 i~~l~-~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~L~~~~~~~~~~~~~l~ 215 (386)
++.++ ..+..+++|+.|++++| .+..++...+..+++|++|++++|.+.... .+..+.
T Consensus 88 l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~--------------------l~~~~~ 146 (276)
T 2z62_A 88 IQSLALGAFSGLSSLQKLVAVET-NLASLENFPIGHLKTLKELNVAHNLIQSFK--------------------LPEYFS 146 (276)
T ss_dssp CCEECTTTTTTCTTCCEEECTTS-CCCCSTTCCCTTCTTCCEEECCSSCCCCCC--------------------CCGGGG
T ss_pred cCccChhhhcCCccccEEECCCC-CccccCchhcccCCCCCEEECcCCccceec--------------------Cchhhc
Confidence 88766 56788899999999988 445555534788899999999988776531 134566
Q ss_pred cccCCcEEEeeccCCccchhcccccccccCccccccCccc----EEEecCCCCCCccc-cccCCCCCcEEeecCCCccch
Q 040192 216 DLKRLNRLKIAECYGLAELKMDYKSVVQNTGQSFVFHSLK----KFQISYCKELKDLT-FLIFAPNLKSIEVDSCYALEE 290 (386)
Q Consensus 216 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~----~L~l~~~~~l~~~~-~l~~l~~L~~L~l~~c~~~~~ 290 (386)
.+++|++|++++|+... .....+. .+++|+ .|++++| .++.++ ......+|+.|++++|. ++.
T Consensus 147 ~l~~L~~L~Ls~N~l~~-~~~~~~~---------~l~~L~~l~l~L~ls~n-~l~~~~~~~~~~~~L~~L~L~~n~-l~~ 214 (276)
T 2z62_A 147 NLTNLEHLDLSSNKIQS-IYCTDLR---------VLHQMPLLNLSLDLSLN-PMNFIQPGAFKEIRLKELALDTNQ-LKS 214 (276)
T ss_dssp GCTTCCEEECCSSCCCE-ECGGGGH---------HHHTCTTCCEEEECCSS-CCCEECTTSSCSCCEEEEECCSSC-CSC
T ss_pred cCCCCCEEECCCCCCCc-CCHHHhh---------hhhhccccceeeecCCC-cccccCccccCCCcccEEECCCCc-eee
Confidence 77888999998886554 3333332 445555 7888887 455443 23334578888888754 666
Q ss_pred hhccCcccccCCCCcccccceeeecccc
Q 040192 291 IVSDVPEVMMGNLNPFAQFHFLCFSYLP 318 (386)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 318 (386)
++. ..+..+++|++|++++++
T Consensus 215 ~~~-------~~~~~l~~L~~L~l~~N~ 235 (276)
T 2z62_A 215 VPD-------GIFDRLTSLQKIWLHTNP 235 (276)
T ss_dssp CCT-------TTTTTCCSCCEEECCSSC
T ss_pred cCH-------hHhcccccccEEEccCCc
Confidence 554 255677888888888763
No 77
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.78 E-value=1.6e-18 Score=150.82 Aligned_cols=198 Identities=16% Similarity=0.200 Sum_probs=118.4
Q ss_pred cCceecccCCccccccch-hhcCCCccCEEEcCCCC-CCcccH-hhhccCCCCEEEccC-CccccccchhhhcCCCCCcE
Q 040192 102 RLNVLNLSGAIRLYSFPL-GISKLISLQHLDLSNTG-IAELPK-ELNALVNLTCLNLEE-TWRLTVIPRRLISSFSSLHV 177 (386)
Q Consensus 102 ~L~~L~l~~~~~~~~~~~-~~~~l~~L~~L~l~~~~-i~~l~~-~~~~l~~L~~L~l~~-~~~~~~~~~~~l~~l~~L~~ 177 (386)
.+++|+++++ .+..++. .+..+++|++|++++|. ++.++. .+..+++|+.|++++ | .+..++...+..+++|+.
T Consensus 32 ~l~~L~l~~n-~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n-~l~~i~~~~f~~l~~L~~ 109 (239)
T 2xwt_C 32 STQTLKLIET-HLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTR-NLTYIDPDALKELPLLKF 109 (239)
T ss_dssp TCCEEEEESC-CCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEET-TCCEECTTSEECCTTCCE
T ss_pred cccEEEEeCC-cceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCC-CeeEcCHHHhCCCCCCCE
Confidence 5566666666 5555533 45566666666666664 555553 455666666666666 4 445555444666777777
Q ss_pred EEEeccCCccccCCCcCcccccccceeecCCccccccccccCCc---EEEeeccCCccchhcccccccccCccccccCcc
Q 040192 178 LRIFGSGYSYSDGMIGNGEFEQLCGFRRSKSLDVSALADLKRLN---RLKIAECYGLAELKMDYKSVVQNTGQSFVFHSL 254 (386)
Q Consensus 178 L~l~~~~~~~~~~~~~l~~L~~L~~~~~~~~~~~~~l~~~~~L~---~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L 254 (386)
|++++|.+..... +..+++|+ .|++++|..+..++...+. .+++|
T Consensus 110 L~l~~n~l~~lp~-----------------------~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~---------~l~~L 157 (239)
T 2xwt_C 110 LGIFNTGLKMFPD-----------------------LTKVYSTDIFFILEITDNPYMTSIPVNAFQ---------GLCNE 157 (239)
T ss_dssp EEEEEECCCSCCC-----------------------CTTCCBCCSEEEEEEESCTTCCEECTTTTT---------TTBSS
T ss_pred EeCCCCCCccccc-----------------------cccccccccccEEECCCCcchhhcCccccc---------chhcc
Confidence 7777766555311 22233343 7777776333334444443 56777
Q ss_pred c-EEEecCCCCCCcccc-ccCCCCCcEEeecCCCccchhhccCcccccCCCCcc-cccceeeeccccccccccCCCcCCC
Q 040192 255 K-KFQISYCKELKDLTF-LIFAPNLKSIEVDSCYALEEIVSDVPEVMMGNLNPF-AQFHFLCFSYLPNLKSIYRKPLPFP 331 (386)
Q Consensus 255 ~-~L~l~~~~~l~~~~~-l~~l~~L~~L~l~~c~~~~~~~~~~~~~~~~~~~~~-~~L~~L~l~~~~~l~~~~~~~~~~~ 331 (386)
+ .|++++| .++.++. ....++|+.|++++|..++.++. ..+..+ ++|++|+++++ .+..++.. .|+
T Consensus 158 ~~~L~l~~n-~l~~i~~~~~~~~~L~~L~L~~n~~l~~i~~-------~~~~~l~~~L~~L~l~~N-~l~~l~~~--~~~ 226 (239)
T 2xwt_C 158 TLTLKLYNN-GFTSVQGYAFNGTKLDAVYLNKNKYLTVIDK-------DAFGGVYSGPSLLDVSQT-SVTALPSK--GLE 226 (239)
T ss_dssp EEEEECCSC-CCCEECTTTTTTCEEEEEECTTCTTCCEECT-------TTTTTCSBCCSEEECTTC-CCCCCCCT--TCT
T ss_pred eeEEEcCCC-CCcccCHhhcCCCCCCEEEcCCCCCcccCCH-------HHhhccccCCcEEECCCC-ccccCChh--Hhc
Confidence 7 7777777 4555432 22226788888887644666654 256667 78888888887 56666543 578
Q ss_pred CccEEeecCcccC
Q 040192 332 HLKEMKVIHCLKL 344 (386)
Q Consensus 332 ~L~~L~i~~c~~L 344 (386)
+|+.|.+.++.+|
T Consensus 227 ~L~~L~l~~~~~l 239 (239)
T 2xwt_C 227 HLKELIARNTWTL 239 (239)
T ss_dssp TCSEEECTTC---
T ss_pred cCceeeccCccCC
Confidence 8888888777643
No 78
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.77 E-value=1.9e-19 Score=163.19 Aligned_cols=223 Identities=17% Similarity=0.188 Sum_probs=170.3
Q ss_pred CccEEEecCCcccc--cCCC-C-------CCCCCcEEecccCcCCC-cCChhhh-cCCCcCceecccCCccccccchhhc
Q 040192 55 NVRRLSLMENQIEN--LSEV-P-------TCPYLRTLFLNNNAPLR-RIDSGFF-QSMPRLNVLNLSGAIRLYSFPLGIS 122 (386)
Q Consensus 55 ~L~~L~l~~~~~~~--~~~~-~-------~~~~L~~L~l~~~~~~~-~~~~~~~-~~l~~L~~L~l~~~~~~~~~~~~~~ 122 (386)
.++.|++++|.+.. ++.. . .+++|++|++++| .+. .+|..++ ..+++|++|++++| .+...|..++
T Consensus 64 ~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~ 141 (312)
T 1wwl_A 64 IIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENL-EVTGTAPPPLLEATGPDLNILNLRNV-SWATRDAWLA 141 (312)
T ss_dssp HHHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEE-BCBSCCCCCSSSCCSCCCSEEEEESC-BCSSSSSHHH
T ss_pred HHhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCC-cccchhHHHHHHhcCCCccEEEccCC-CCcchhHHHH
Confidence 48889999998865 4443 2 6999999999999 555 5666533 89999999999999 8887777777
Q ss_pred CC-----CccCEEEcCCCCCCccc-HhhhccCCCCEEEccCCccccc--cchh-hhcCCCCCcEEEEeccCCccccCCCc
Q 040192 123 KL-----ISLQHLDLSNTGIAELP-KELNALVNLTCLNLEETWRLTV--IPRR-LISSFSSLHVLRIFGSGYSYSDGMIG 193 (386)
Q Consensus 123 ~l-----~~L~~L~l~~~~i~~l~-~~~~~l~~L~~L~l~~~~~~~~--~~~~-~l~~l~~L~~L~l~~~~~~~~~~~~~ 193 (386)
.+ ++|++|++++|.++.++ ..++.+++|++|++++|+..+. ++.. .+..+++|++|++++|.+......
T Consensus 142 ~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-- 219 (312)
T 1wwl_A 142 ELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGV-- 219 (312)
T ss_dssp HHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHH--
T ss_pred HHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHH--
Confidence 76 99999999999999777 6788999999999999965544 2333 138899999999999987743100
Q ss_pred CcccccccceeecCCccccccccccCCcEEEeeccCCccchhcccccccccCccccccCcccEEEecCCCCCCccccccC
Q 040192 194 NGEFEQLCGFRRSKSLDVSALADLKRLNRLKIAECYGLAELKMDYKSVVQNTGQSFVFHSLKKFQISYCKELKDLTFLIF 273 (386)
Q Consensus 194 l~~L~~L~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~l~~ 273 (386)
....+..+++|+.|++++|+.....+...+. .+++|+.|++++| .++.++..-.
T Consensus 220 ----------------~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~---------~l~~L~~L~Ls~N-~l~~ip~~~~ 273 (312)
T 1wwl_A 220 ----------------CSALAAARVQLQGLDLSHNSLRDAAGAPSCD---------WPSQLNSLNLSFT-GLKQVPKGLP 273 (312)
T ss_dssp ----------------HHHHHHTTCCCSEEECTTSCCCSSCCCSCCC---------CCTTCCEEECTTS-CCSSCCSSCC
T ss_pred ----------------HHHHHhcCCCCCEEECCCCcCCcccchhhhh---------hcCCCCEEECCCC-ccChhhhhcc
Confidence 0122345689999999999766533223332 5799999999999 5666654222
Q ss_pred CCCCcEEeecCCCccchhhccCcccccCCCCcccccceeeecccc
Q 040192 274 APNLKSIEVDSCYALEEIVSDVPEVMMGNLNPFAQFHFLCFSYLP 318 (386)
Q Consensus 274 l~~L~~L~l~~c~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 318 (386)
++|+.|+++++. ++.+ . .+..+++|++|++++++
T Consensus 274 -~~L~~L~Ls~N~-l~~~-p--------~~~~l~~L~~L~L~~N~ 307 (312)
T 1wwl_A 274 -AKLSVLDLSYNR-LDRN-P--------SPDELPQVGNLSLKGNP 307 (312)
T ss_dssp -SEEEEEECCSSC-CCSC-C--------CTTTSCEEEEEECTTCT
T ss_pred -CCceEEECCCCC-CCCC-h--------hHhhCCCCCEEeccCCC
Confidence 899999999954 7766 2 46788999999999983
No 79
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.77 E-value=5.6e-19 Score=161.67 Aligned_cols=221 Identities=16% Similarity=0.137 Sum_probs=119.2
Q ss_pred ccEEEecCCcccccCCCCCC--CCCcEEecccCcCCCcCChhhhcCCCcCceecccCCccccc--cchhhcCCCccCEEE
Q 040192 56 VRRLSLMENQIENLSEVPTC--PYLRTLFLNNNAPLRRIDSGFFQSMPRLNVLNLSGAIRLYS--FPLGISKLISLQHLD 131 (386)
Q Consensus 56 L~~L~l~~~~~~~~~~~~~~--~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~--~~~~~~~l~~L~~L~ 131 (386)
+++++++++.+.. .....+ ++++.|+++++ .+...++. +..+++|++|++++| .+.. ++..+..+++|++|+
T Consensus 49 ~~~l~l~~~~~~~-~~~~~~~~~~l~~L~l~~n-~l~~~~~~-~~~~~~L~~L~L~~~-~l~~~~~~~~~~~~~~L~~L~ 124 (336)
T 2ast_B 49 WQTLDLTGKNLHP-DVTGRLLSQGVIAFRCPRS-FMDQPLAE-HFSPFRVQHMDLSNS-VIEVSTLHGILSQCSKLQNLS 124 (336)
T ss_dssp SSEEECTTCBCCH-HHHHHHHHTTCSEEECTTC-EECSCCCS-CCCCBCCCEEECTTC-EECHHHHHHHHTTBCCCSEEE
T ss_pred heeeccccccCCH-HHHHhhhhccceEEEcCCc-cccccchh-hccCCCCCEEEccCC-CcCHHHHHHHHhhCCCCCEEe
Confidence 5566666655442 001233 56666666666 44443333 345666666666666 4442 455556666666666
Q ss_pred cCCCCCC-cccHhhhccCCCCEEEccCCccccc--cchhhhcCCCCCcEEEEecc-CCccccCCCcCcccccccceeecC
Q 040192 132 LSNTGIA-ELPKELNALVNLTCLNLEETWRLTV--IPRRLISSFSSLHVLRIFGS-GYSYSDGMIGNGEFEQLCGFRRSK 207 (386)
Q Consensus 132 l~~~~i~-~l~~~~~~l~~L~~L~l~~~~~~~~--~~~~~l~~l~~L~~L~l~~~-~~~~~~~~~~l~~L~~L~~~~~~~ 207 (386)
+++|.++ ..+..++.+++|++|++++|..++. ++. .+..+++|++|++++| .+.+..
T Consensus 125 L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~-~~~~~~~L~~L~l~~~~~l~~~~------------------ 185 (336)
T 2ast_B 125 LEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQT-LLSSCSRLDELNLSWCFDFTEKH------------------ 185 (336)
T ss_dssp CTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHH-HHHHCTTCCEEECCCCTTCCHHH------------------
T ss_pred CcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHH-HHhcCCCCCEEcCCCCCCcChHH------------------
Confidence 6666665 4445556666666666666633332 333 2566666666666666 444320
Q ss_pred Ccccccccccc-CCcEEEeeccC-Ccc-chhcccccccccCccccccCcccEEEecCCCCCCc--cccccCCCCCcEEee
Q 040192 208 SLDVSALADLK-RLNRLKIAECY-GLA-ELKMDYKSVVQNTGQSFVFHSLKKFQISYCKELKD--LTFLIFAPNLKSIEV 282 (386)
Q Consensus 208 ~~~~~~l~~~~-~L~~L~l~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~--~~~l~~l~~L~~L~l 282 (386)
....+..++ +|++|++++|. ... ......+. .+++|+.|++++|..+++ +..+..+++|++|++
T Consensus 186 --~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~---------~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l 254 (336)
T 2ast_B 186 --VQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVR---------RCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSL 254 (336)
T ss_dssp --HHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHH---------HCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEEC
T ss_pred --HHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHh---------hCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeC
Confidence 012234455 66666666663 121 11112222 566777777776653443 344566677777777
Q ss_pred cCCCccchhhccCcccccCCCCcccccceeeeccc
Q 040192 283 DSCYALEEIVSDVPEVMMGNLNPFAQFHFLCFSYL 317 (386)
Q Consensus 283 ~~c~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 317 (386)
++|..+..... ..+..+++|++|++++|
T Consensus 255 ~~~~~~~~~~~-------~~l~~~~~L~~L~l~~~ 282 (336)
T 2ast_B 255 SRCYDIIPETL-------LELGEIPTLKTLQVFGI 282 (336)
T ss_dssp TTCTTCCGGGG-------GGGGGCTTCCEEECTTS
T ss_pred CCCCCCCHHHH-------HHHhcCCCCCEEeccCc
Confidence 76653333222 13455667777777766
No 80
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.77 E-value=1.2e-18 Score=159.42 Aligned_cols=244 Identities=18% Similarity=0.186 Sum_probs=179.2
Q ss_pred ccEEEEcCCCCCCCCccccc--ccCccEEEecCCccccc-CCCCCCCCCcEEecccCcCCCcC-ChhhhcCCCcCceecc
Q 040192 33 EEHLVYAGAGLSETPDVRKW--EKNVRRLSLMENQIENL-SEVPTCPYLRTLFLNNNAPLRRI-DSGFFQSMPRLNVLNL 108 (386)
Q Consensus 33 ~~~l~~~~~~l~~~p~~~~~--~~~L~~L~l~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~-~~~~~~~l~~L~~L~l 108 (386)
-..+++.+..+.. ..+..+ + +++.++++++.+.+. +....+++|+.|++++| .+... .+..+..+++|++|++
T Consensus 49 ~~~l~l~~~~~~~-~~~~~~~~~-~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~-~l~~~~~~~~~~~~~~L~~L~L 125 (336)
T 2ast_B 49 WQTLDLTGKNLHP-DVTGRLLSQ-GVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNS-VIEVSTLHGILSQCSKLQNLSL 125 (336)
T ss_dssp SSEEECTTCBCCH-HHHHHHHHT-TCSEEECTTCEECSCCCSCCCCBCCCEEECTTC-EECHHHHHHHHTTBCCCSEEEC
T ss_pred heeeccccccCCH-HHHHhhhhc-cceEEEcCCccccccchhhccCCCCCEEEccCC-CcCHHHHHHHHhhCCCCCEEeC
Confidence 4566666655541 123444 5 899999999999884 44478999999999999 55532 3344789999999999
Q ss_pred cCCcccc-ccchhhcCCCccCEEEcCCC-CCC--cccHhhhccCCCCEEEccCCccccc--cchhhhcCCC-CCcEEEEe
Q 040192 109 SGAIRLY-SFPLGISKLISLQHLDLSNT-GIA--ELPKELNALVNLTCLNLEETWRLTV--IPRRLISSFS-SLHVLRIF 181 (386)
Q Consensus 109 ~~~~~~~-~~~~~~~~l~~L~~L~l~~~-~i~--~l~~~~~~l~~L~~L~l~~~~~~~~--~~~~~l~~l~-~L~~L~l~ 181 (386)
++| .+. ..+..++.+++|++|++++| .++ .++..+..+++|++|++++|..+.. ++. .+..++ +|++|+++
T Consensus 126 ~~~-~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~-~~~~l~~~L~~L~l~ 203 (336)
T 2ast_B 126 EGL-RLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQV-AVAHVSETITQLNLS 203 (336)
T ss_dssp TTC-BCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHH-HHHHSCTTCCEEECC
T ss_pred cCc-ccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHH-HHHhcccCCCEEEeC
Confidence 999 666 45778889999999999999 677 4777788999999999999944443 444 378899 99999999
Q ss_pred ccC--CccccCCCcCcccccccceeecCCccccccccccCCcEEEeeccCCccchhcccccccccCccccccCcccEEEe
Q 040192 182 GSG--YSYSDGMIGNGEFEQLCGFRRSKSLDVSALADLKRLNRLKIAECYGLAELKMDYKSVVQNTGQSFVFHSLKKFQI 259 (386)
Q Consensus 182 ~~~--~~~~~~~~~l~~L~~L~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l 259 (386)
+|. ++.. ..+..+..+++|++|++++|....+..+..+. .+++|++|++
T Consensus 204 ~~~~~~~~~--------------------~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~---------~l~~L~~L~l 254 (336)
T 2ast_B 204 GYRKNLQKS--------------------DLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFF---------QLNYLQHLSL 254 (336)
T ss_dssp SCGGGSCHH--------------------HHHHHHHHCTTCSEEECTTCTTCCGGGGGGGG---------GCTTCCEEEC
T ss_pred CCcccCCHH--------------------HHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHh---------CCCCCCEeeC
Confidence 984 3322 11234566899999999999854433444444 7899999999
Q ss_pred cCCCCCCcc--ccccCCCCCcEEeecCCCccchhhccCcccccCCCCcc-cccceeeeccccccccc
Q 040192 260 SYCKELKDL--TFLIFAPNLKSIEVDSCYALEEIVSDVPEVMMGNLNPF-AQFHFLCFSYLPNLKSI 323 (386)
Q Consensus 260 ~~~~~l~~~--~~l~~l~~L~~L~l~~c~~~~~~~~~~~~~~~~~~~~~-~~L~~L~l~~~~~l~~~ 323 (386)
++|..+.+. ..++.+++|+.|++++| +++. .+..+ .+|+.|+++++ .+...
T Consensus 255 ~~~~~~~~~~~~~l~~~~~L~~L~l~~~--i~~~----------~~~~l~~~l~~L~l~~n-~l~~~ 308 (336)
T 2ast_B 255 SRCYDIIPETLLELGEIPTLKTLQVFGI--VPDG----------TLQLLKEALPHLQINCS-HFTTI 308 (336)
T ss_dssp TTCTTCCGGGGGGGGGCTTCCEEECTTS--SCTT----------CHHHHHHHSTTSEESCC-CSCCT
T ss_pred CCCCCCCHHHHHHHhcCCCCCEEeccCc--cCHH----------HHHHHHhhCcceEEecc-cCccc
Confidence 999755543 35778999999999998 3322 22333 34777778766 55543
No 81
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.76 E-value=2.9e-17 Score=143.90 Aligned_cols=187 Identities=21% Similarity=0.297 Sum_probs=153.1
Q ss_pred hhHHHhhhccccccccEEEEcCCCCCCCCcccccccCccEEEecCCcccccCCC--CCCCCCcEEecccCcCCCcCChhh
Q 040192 19 AMLPRMSSDIEEEKEEHLVYAGAGLSETPDVRKWEKNVRRLSLMENQIENLSEV--PTCPYLRTLFLNNNAPLRRIDSGF 96 (386)
Q Consensus 19 d~~~~~~~~~~~~~~~~l~~~~~~l~~~p~~~~~~~~L~~L~l~~~~~~~~~~~--~~~~~L~~L~l~~~~~~~~~~~~~ 96 (386)
+...|.++.|.. ....+++.+.++..+|.. ++++++.|++++|.+..++.. ..+++|++|++++| .+..+++..
T Consensus 3 ~Cp~~~gC~C~~-~~~~l~~~~~~l~~~p~~--~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~ 78 (251)
T 3m19_A 3 TCETVTGCTCNE-GKKEVDCQGKSLDSVPSG--IPADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYN-QLQTLSAGV 78 (251)
T ss_dssp -CHHHHSSEEEG-GGTEEECTTCCCSSCCSC--CCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTS-CCCCCCTTT
T ss_pred cCCCCCceEcCC-CCeEEecCCCCccccCCC--CCCCCCEEEccCCCcCccCHhHhcCcccCCEEECCCC-cCCccCHhH
Confidence 344566677753 466899999999999863 223899999999999996653 88999999999999 788887777
Q ss_pred hcCCCcCceecccCCccccccc-hhhcCCCccCEEEcCCCCCCcccHh-hhccCCCCEEEccCCccccccchhhhcCCCC
Q 040192 97 FQSMPRLNVLNLSGAIRLYSFP-LGISKLISLQHLDLSNTGIAELPKE-LNALVNLTCLNLEETWRLTVIPRRLISSFSS 174 (386)
Q Consensus 97 ~~~l~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~~~i~~l~~~-~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~ 174 (386)
+..+++|++|++++| .+..++ ..+..+++|++|++++|.++.++.. +..+++|+.|++++| .+..++...+..+++
T Consensus 79 ~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~ 156 (251)
T 3m19_A 79 FDDLTELGTLGLANN-QLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTN-QLQSIPAGAFDKLTN 156 (251)
T ss_dssp TTTCTTCCEEECTTS-CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTT
T ss_pred hccCCcCCEEECCCC-cccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCC-cCCccCHHHcCcCcC
Confidence 899999999999999 888775 5678999999999999999988764 578999999999999 667777766899999
Q ss_pred CcEEEEeccCCccccCCCcCcccccccceeecCCccccccccccCCcEEEeeccCCcc
Q 040192 175 LHVLRIFGSGYSYSDGMIGNGEFEQLCGFRRSKSLDVSALADLKRLNRLKIAECYGLA 232 (386)
Q Consensus 175 L~~L~l~~~~~~~~~~~~~l~~L~~L~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~ 232 (386)
|++|++++|.+... ....+..+++|+.|++++|....
T Consensus 157 L~~L~L~~N~l~~~---------------------~~~~~~~l~~L~~L~l~~N~~~c 193 (251)
T 3m19_A 157 LQTLSLSTNQLQSV---------------------PHGAFDRLGKLQTITLFGNQFDC 193 (251)
T ss_dssp CCEEECCSSCCSCC---------------------CTTTTTTCTTCCEEECCSCCBCT
T ss_pred CCEEECCCCcCCcc---------------------CHHHHhCCCCCCEEEeeCCceeC
Confidence 99999999988765 12345567889999999886543
No 82
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.75 E-value=3e-17 Score=146.92 Aligned_cols=194 Identities=23% Similarity=0.235 Sum_probs=160.8
Q ss_pred cccEEEEcCCCCCCCCcccccccCccEEEecCCcccccCC--CCCCCCCcEEecccCcCCCcCChhhhcCCCcCceeccc
Q 040192 32 KEEHLVYAGAGLSETPDVRKWEKNVRRLSLMENQIENLSE--VPTCPYLRTLFLNNNAPLRRIDSGFFQSMPRLNVLNLS 109 (386)
Q Consensus 32 ~~~~l~~~~~~l~~~p~~~~~~~~L~~L~l~~~~~~~~~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~ 109 (386)
....+.+.+.++..+|... +++++.|++++|.+..++. ...+++|+.|++++| .+..++. .+.+++|++|+++
T Consensus 11 ~l~~l~~~~~~l~~ip~~~--~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~--~~~l~~L~~L~Ls 85 (290)
T 1p9a_G 11 SHLEVNCDKRNLTALPPDL--PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRA-ELTKLQV--DGTLPVLGTLDLS 85 (290)
T ss_dssp TCCEEECTTSCCSSCCSCC--CTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTS-CCCEEEC--CSCCTTCCEEECC
T ss_pred CccEEECCCCCCCcCCCCC--CCCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCC-ccCcccC--CCCCCcCCEEECC
Confidence 3677889999999987522 2389999999999998643 388999999999999 7777765 3789999999999
Q ss_pred CCccccccchhhcCCCccCEEEcCCCCCCccc-HhhhccCCCCEEEccCCccccccchhhhcCCCCCcEEEEeccCCccc
Q 040192 110 GAIRLYSFPLGISKLISLQHLDLSNTGIAELP-KELNALVNLTCLNLEETWRLTVIPRRLISSFSSLHVLRIFGSGYSYS 188 (386)
Q Consensus 110 ~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~l~-~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~ 188 (386)
+| .+..+|..+..+++|++|++++|.++.+| ..+..+++|+.|++++| .+..++..++..+++|+.|++++|.+...
T Consensus 86 ~N-~l~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N~l~~l 163 (290)
T 1p9a_G 86 HN-QLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGN-ELKTLPPGLLTPTPKLEKLSLANNNLTEL 163 (290)
T ss_dssp SS-CCSSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTS-CCCCCCTTTTTTCTTCCEEECTTSCCSCC
T ss_pred CC-cCCcCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCC-CCCccChhhcccccCCCEEECCCCcCCcc
Confidence 99 89999988899999999999999999887 56889999999999999 56777877789999999999999988765
Q ss_pred cCCCcCcccccccceeecCCccccccccccCCcEEEeeccCCccchhcccccccccCccccccCcccEEEecCCCC
Q 040192 189 DGMIGNGEFEQLCGFRRSKSLDVSALADLKRLNRLKIAECYGLAELKMDYKSVVQNTGQSFVFHSLKKFQISYCKE 264 (386)
Q Consensus 189 ~~~~~l~~L~~L~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 264 (386)
. ...+..+++|+.|++++|+... ++...+ ..++|+.|.+++|+-
T Consensus 164 ~---------------------~~~~~~l~~L~~L~L~~N~l~~-ip~~~~----------~~~~L~~l~L~~Np~ 207 (290)
T 1p9a_G 164 P---------------------AGLLNGLENLDTLLLQENSLYT-IPKGFF----------GSHLLPFAFLHGNPW 207 (290)
T ss_dssp C---------------------TTTTTTCTTCCEEECCSSCCCC-CCTTTT----------TTCCCSEEECCSCCB
T ss_pred C---------------------HHHhcCcCCCCEEECCCCcCCc-cChhhc----------ccccCCeEEeCCCCc
Confidence 1 2234567899999999997653 443333 567999999999863
No 83
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.73 E-value=6.2e-17 Score=144.98 Aligned_cols=169 Identities=21% Similarity=0.273 Sum_probs=83.0
Q ss_pred CCCCCCcEEecccCcCCCcCChhhhcCCCcCceecccCCccccccchhhcCCCccCEEEcCCCCCCcccHhhhccCCCCE
Q 040192 73 PTCPYLRTLFLNNNAPLRRIDSGFFQSMPRLNVLNLSGAIRLYSFPLGISKLISLQHLDLSNTGIAELPKELNALVNLTC 152 (386)
Q Consensus 73 ~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~l~~~~~~l~~L~~ 152 (386)
..+++|+.|++++| .+..++. +..+++|++|++++| .+..++. +..+++|++|++++|.++.++. +..+++|+.
T Consensus 43 ~~l~~L~~L~l~~~-~i~~~~~--~~~l~~L~~L~L~~n-~l~~~~~-l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~ 116 (291)
T 1h6t_A 43 NELNSIDQIIANNS-DIKSVQG--IQYLPNVTKLFLNGN-KLTDIKP-LANLKNLGWLFLDENKVKDLSS-LKDLKKLKS 116 (291)
T ss_dssp HHHHTCCEEECTTS-CCCCCTT--GGGCTTCCEEECCSS-CCCCCGG-GTTCTTCCEEECCSSCCCCGGG-GTTCTTCCE
T ss_pred hhcCcccEEEccCC-CcccChh--HhcCCCCCEEEccCC-ccCCCcc-cccCCCCCEEECCCCcCCCChh-hccCCCCCE
Confidence 33444444444444 3333332 344445555555444 4444433 4445555555555555544432 444555555
Q ss_pred EEccCCccccccchhhhcCCCCCcEEEEeccCCccccCCCcCcccccccceeecCCccccccccccCCcEEEeeccCCcc
Q 040192 153 LNLEETWRLTVIPRRLISSFSSLHVLRIFGSGYSYSDGMIGNGEFEQLCGFRRSKSLDVSALADLKRLNRLKIAECYGLA 232 (386)
Q Consensus 153 L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~L~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~ 232 (386)
|++++| .+..++. +..+++|+.|++++|.+... ..+..+++|+.|++++|+...
T Consensus 117 L~L~~n-~i~~~~~--l~~l~~L~~L~l~~n~l~~~-----------------------~~l~~l~~L~~L~L~~N~l~~ 170 (291)
T 1h6t_A 117 LSLEHN-GISDING--LVHLPQLESLYLGNNKITDI-----------------------TVLSRLTKLDTLSLEDNQISD 170 (291)
T ss_dssp EECTTS-CCCCCGG--GGGCTTCCEEECCSSCCCCC-----------------------GGGGGCTTCSEEECCSSCCCC
T ss_pred EECCCC-cCCCChh--hcCCCCCCEEEccCCcCCcc-----------------------hhhccCCCCCEEEccCCcccc
Confidence 555555 2333332 45555555555555544332 123344555555555554332
Q ss_pred chhcccccccccCccccccCcccEEEecCCCCCCccccccCCCCCcEEeecCCC
Q 040192 233 ELKMDYKSVVQNTGQSFVFHSLKKFQISYCKELKDLTFLIFAPNLKSIEVDSCY 286 (386)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~l~~l~~L~~L~l~~c~ 286 (386)
... +. .+++|+.|++++| .+++++.+..+++|+.|++++++
T Consensus 171 -~~~--l~---------~l~~L~~L~L~~N-~i~~l~~l~~l~~L~~L~l~~n~ 211 (291)
T 1h6t_A 171 -IVP--LA---------GLTKLQNLYLSKN-HISDLRALAGLKNLDVLELFSQE 211 (291)
T ss_dssp -CGG--GT---------TCTTCCEEECCSS-CCCBCGGGTTCTTCSEEEEEEEE
T ss_pred -chh--hc---------CCCccCEEECCCC-cCCCChhhccCCCCCEEECcCCc
Confidence 211 22 5566666666666 45555556666666666666643
No 84
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.73 E-value=9.4e-17 Score=147.76 Aligned_cols=236 Identities=15% Similarity=0.072 Sum_probs=134.7
Q ss_pred cEEEecCCcccccCCCCCCCCCcEEecccCcCCCcCChhhhcCCCcCceecccCCccc-cccc-hhhcCCCccCE-EEcC
Q 040192 57 RRLSLMENQIENLSEVPTCPYLRTLFLNNNAPLRRIDSGFFQSMPRLNVLNLSGAIRL-YSFP-LGISKLISLQH-LDLS 133 (386)
Q Consensus 57 ~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~-~~~~-~~~~~l~~L~~-L~l~ 133 (386)
++++.++++++.+|... .++++.|++++| .++.++...|.++++|++|++++| .+ +.++ ..|.++++++. +.+.
T Consensus 12 ~~v~C~~~~Lt~iP~~l-~~~l~~L~Ls~N-~i~~i~~~~f~~l~~L~~L~Ls~N-~i~~~i~~~~f~~L~~l~~~l~~~ 88 (350)
T 4ay9_X 12 RVFLCQESKVTEIPSDL-PRNAIELRFVLT-KLRVIQKGAFSGFGDLEKIEISQN-DVLEVIEADVFSNLPKLHEIRIEK 88 (350)
T ss_dssp TEEEEESTTCCSCCTTC-CTTCSEEEEESC-CCSEECTTSSTTCTTCCEEEEECC-TTCCEECTTSBCSCTTCCEEEEEE
T ss_pred CEEEecCCCCCccCcCc-CCCCCEEEccCC-cCCCcCHHHHcCCCCCCEEECcCC-CCCCccChhHhhcchhhhhhhccc
Confidence 34555666666655431 346667777766 666666655666777777777666 43 3343 34556665554 3444
Q ss_pred CCCCCccc-HhhhccCCCCEEEccCCccccccchhhhcCCCCCcEEEEecc-CCccccCCCcCcccccccceeecCCccc
Q 040192 134 NTGIAELP-KELNALVNLTCLNLEETWRLTVIPRRLISSFSSLHVLRIFGS-GYSYSDGMIGNGEFEQLCGFRRSKSLDV 211 (386)
Q Consensus 134 ~~~i~~l~-~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~-~~~~~~~~~~l~~L~~L~~~~~~~~~~~ 211 (386)
.|.++.++ ..+..+++|+.|++++| .+..++...+....++..|++.++ .+... ..
T Consensus 89 ~N~l~~l~~~~f~~l~~L~~L~l~~n-~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l---------------------~~ 146 (350)
T 4ay9_X 89 ANNLLYINPEAFQNLPNLQYLLISNT-GIKHLPDVHKIHSLQKVLLDIQDNINIHTI---------------------ER 146 (350)
T ss_dssp ETTCCEECTTSBCCCTTCCEEEEEEE-CCSSCCCCTTCCBSSCEEEEEESCTTCCEE---------------------CT
T ss_pred CCcccccCchhhhhcccccccccccc-ccccCCchhhcccchhhhhhhccccccccc---------------------cc
Confidence 45666553 34556666666666666 334444432344445555555442 22211 01
Q ss_pred cccccc-cCCcEEEeeccCCccchhcccccccccCccccccCcccEEEecCCCCCCcccc--ccCCCCCcEEeecCCCcc
Q 040192 212 SALADL-KRLNRLKIAECYGLAELKMDYKSVVQNTGQSFVFHSLKKFQISYCKELKDLTF--LIFAPNLKSIEVDSCYAL 288 (386)
Q Consensus 212 ~~l~~~-~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~--l~~l~~L~~L~l~~c~~~ 288 (386)
..+..+ ..++.|++++|+... ++...+ ...+|++|.+.++..++.++. +..+++|+.|+++++ .+
T Consensus 147 ~~f~~~~~~l~~L~L~~N~i~~-i~~~~f----------~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N-~l 214 (350)
T 4ay9_X 147 NSFVGLSFESVILWLNKNGIQE-IHNSAF----------NGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRT-RI 214 (350)
T ss_dssp TSSTTSBSSCEEEECCSSCCCE-ECTTSS----------TTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTS-CC
T ss_pred cchhhcchhhhhhccccccccC-CChhhc----------cccchhHHhhccCCcccCCCHHHhccCcccchhhcCCC-Cc
Confidence 112222 357777777775543 333333 446777777776656776653 466777888888774 46
Q ss_pred chhhccCcccccCCCCcccccceeeeccccccccccCCCcCCCCccEEeecC
Q 040192 289 EEIVSDVPEVMMGNLNPFAQFHFLCFSYLPNLKSIYRKPLPFPHLKEMKVIH 340 (386)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~L~~L~i~~ 340 (386)
+.++. ..+.+|+.|.+.++..++++|. ...+++|+.+++.+
T Consensus 215 ~~lp~----------~~~~~L~~L~~l~~~~l~~lP~-l~~l~~L~~l~l~~ 255 (350)
T 4ay9_X 215 HSLPS----------YGLENLKKLRARSTYNLKKLPT-LEKLVALMEASLTY 255 (350)
T ss_dssp CCCCS----------SSCTTCCEEECTTCTTCCCCCC-TTTCCSCCEEECSC
T ss_pred CccCh----------hhhccchHhhhccCCCcCcCCC-chhCcChhhCcCCC
Confidence 66643 3456666666666666777763 55677777777753
No 85
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.72 E-value=7.7e-19 Score=167.82 Aligned_cols=294 Identities=20% Similarity=0.192 Sum_probs=164.6
Q ss_pred cccEEEEcCCCCCCC-----Cc-ccccccCccEEEecCCcccc--cCCC-CCCC----CCcEEecccCcCCCcCC----h
Q 040192 32 KEEHLVYAGAGLSET-----PD-VRKWEKNVRRLSLMENQIEN--LSEV-PTCP----YLRTLFLNNNAPLRRID----S 94 (386)
Q Consensus 32 ~~~~l~~~~~~l~~~-----p~-~~~~~~~L~~L~l~~~~~~~--~~~~-~~~~----~L~~L~l~~~~~~~~~~----~ 94 (386)
....+.+.+..+.+. +. +..++ +|++|++++|.+.+ +... ..++ +|++|++++| .+.... +
T Consensus 29 ~L~~L~L~~~~l~~~~~~~l~~~l~~~~-~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n-~i~~~~~~~l~ 106 (461)
T 1z7x_W 29 QCQVVRLDDCGLTEARCKDISSALRVNP-ALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNC-CLTGAGCGVLS 106 (461)
T ss_dssp TCSEEEEESSCCCHHHHHHHHHHHHTCT-TCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTS-CCBGGGHHHHH
T ss_pred CccEEEccCCCCCHHHHHHHHHHHHhCC-CcCEEeCCCCcCChHHHHHHHHHHhhCCCceeEEEccCC-CCCHHHHHHHH
Confidence 366777777776532 22 44456 78888888887765 2122 2333 6888888887 555321 3
Q ss_pred hhhcCCCcCceecccCCcccccc-chhh-----cCCCccCEEEcCCCCCCc-----ccHhhhccCCCCEEEccCCccccc
Q 040192 95 GFFQSMPRLNVLNLSGAIRLYSF-PLGI-----SKLISLQHLDLSNTGIAE-----LPKELNALVNLTCLNLEETWRLTV 163 (386)
Q Consensus 95 ~~~~~l~~L~~L~l~~~~~~~~~-~~~~-----~~l~~L~~L~l~~~~i~~-----l~~~~~~l~~L~~L~l~~~~~~~~ 163 (386)
..+..+++|++|++++| .+... +..+ ...++|++|++++|.++. ++..+..+++|++|++++|. +..
T Consensus 107 ~~l~~~~~L~~L~Ls~n-~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~-i~~ 184 (461)
T 1z7x_W 107 STLRTLPTLQELHLSDN-LLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNND-INE 184 (461)
T ss_dssp HHTTSCTTCCEEECCSS-BCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSB-CHH
T ss_pred HHHccCCceeEEECCCC-cCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCC-cch
Confidence 33677888888888877 55532 2222 224568888888887763 34556667888888888874 333
Q ss_pred cchhhhc-----CCCCCcEEEEeccCCccc------cCCCcCccccccc-ceeecCCccc----c-ccccccCCcEEEee
Q 040192 164 IPRRLIS-----SFSSLHVLRIFGSGYSYS------DGMIGNGEFEQLC-GFRRSKSLDV----S-ALADLKRLNRLKIA 226 (386)
Q Consensus 164 ~~~~~l~-----~l~~L~~L~l~~~~~~~~------~~~~~l~~L~~L~-~~~~~~~~~~----~-~l~~~~~L~~L~l~ 226 (386)
.....+. ..++|++|++++|.+... ..+..++.|+.|. ..+.+.+... . ....+++|++|+++
T Consensus 185 ~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~ 264 (461)
T 1z7x_W 185 AGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIW 264 (461)
T ss_dssp HHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECT
T ss_pred HHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECc
Confidence 2211121 356888888888877653 1122344455444 1222211111 1 11135677777777
Q ss_pred ccCCccch---hcccccccccCccccccCcccEEEecCCCCCCccc--cc-----cCCCCCcEEeecCCCccchhhccCc
Q 040192 227 ECYGLAEL---KMDYKSVVQNTGQSFVFHSLKKFQISYCKELKDLT--FL-----IFAPNLKSIEVDSCYALEEIVSDVP 296 (386)
Q Consensus 227 ~~~~~~~~---~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~--~l-----~~l~~L~~L~l~~c~~~~~~~~~~~ 296 (386)
+|.....- ....+. .+++|++|++++| .+++.. .+ ...++|++|++++|. ++.......
T Consensus 265 ~n~l~~~~~~~l~~~l~---------~~~~L~~L~Ls~n-~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~-l~~~~~~~l 333 (461)
T 1z7x_W 265 ECGITAKGCGDLCRVLR---------AKESLKELSLAGN-ELGDEGARLLCETLLEPGCQLESLWVKSCS-FTAACCSHF 333 (461)
T ss_dssp TSCCCHHHHHHHHHHHH---------HCTTCCEEECTTC-CCHHHHHHHHHHHHTSTTCCCCEEECTTSC-CBGGGHHHH
T ss_pred CCCCCHHHHHHHHHHHh---------hCCCcceEECCCC-CCchHHHHHHHHHhccCCccceeeEcCCCC-CchHHHHHH
Confidence 77544321 011121 4677888888777 344321 11 123578888888765 443211000
Q ss_pred ccccCCCCcccccceeeeccccccccccC-CC-----cCCCCccEEeecCcccCc
Q 040192 297 EVMMGNLNPFAQFHFLCFSYLPNLKSIYR-KP-----LPFPHLKEMKVIHCLKLK 345 (386)
Q Consensus 297 ~~~~~~~~~~~~L~~L~l~~~~~l~~~~~-~~-----~~~~~L~~L~i~~c~~L~ 345 (386)
...+..+++|++|+++++ .+.+... .. ...++|+.|++++| .++
T Consensus 334 ---~~~l~~~~~L~~L~Ls~n-~i~~~~~~~l~~~l~~~~~~L~~L~L~~n-~i~ 383 (461)
T 1z7x_W 334 ---SSVLAQNRFLLELQISNN-RLEDAGVRELCQGLGQPGSVLRVLWLADC-DVS 383 (461)
T ss_dssp ---HHHHHHCSSCCEEECCSS-BCHHHHHHHHHHHHTSTTCCCCEEECTTS-CCC
T ss_pred ---HHHHhhCCCccEEEccCC-ccccccHHHHHHHHcCCCCceEEEECCCC-CCC
Confidence 013445688888888888 4543221 11 12678999999887 455
No 86
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.72 E-value=1.5e-17 Score=163.90 Aligned_cols=294 Identities=14% Similarity=0.119 Sum_probs=161.9
Q ss_pred cccEEEEcCCCCCCCC-----c-ccccccCccEEEecCCcccc-----cCCC-CCCCCCcEEecccCcCCCcCChhhhcC
Q 040192 32 KEEHLVYAGAGLSETP-----D-VRKWEKNVRRLSLMENQIEN-----LSEV-PTCPYLRTLFLNNNAPLRRIDSGFFQS 99 (386)
Q Consensus 32 ~~~~l~~~~~~l~~~p-----~-~~~~~~~L~~L~l~~~~~~~-----~~~~-~~~~~L~~L~l~~~~~~~~~~~~~~~~ 99 (386)
....+.+.+..+.+.. . ...++ +|++|++++|.+.. ++.. ..+++|++|++++| .+..++.. +..
T Consensus 165 ~L~~L~L~~~~~~~~~~~~l~~~~~~~~-~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~-~~~~l~~~-~~~ 241 (592)
T 3ogk_B 165 KIKTLLMEESSFSEKDGKWLHELAQHNT-SLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDF-EILELVGF-FKA 241 (592)
T ss_dssp TCSEEECTTCEEECCCSHHHHHHHHHCC-CCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSC-BGGGGHHH-HHH
T ss_pred CCCEEECccccccCcchhHHHHHHhcCC-CccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCc-cHHHHHHH-Hhh
Confidence 3667777666543321 1 23455 88888888887763 3323 57788888888887 55555433 566
Q ss_pred CCcCceecccCCc--------------------------cccccchhhcCCCccCEEEcCCCCCC--cccHhhhccCCCC
Q 040192 100 MPRLNVLNLSGAI--------------------------RLYSFPLGISKLISLQHLDLSNTGIA--ELPKELNALVNLT 151 (386)
Q Consensus 100 l~~L~~L~l~~~~--------------------------~~~~~~~~~~~l~~L~~L~l~~~~i~--~l~~~~~~l~~L~ 151 (386)
+++|+.|++.... ....+|..+..+++|++|++++|.++ .++..+..+++|+
T Consensus 242 ~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~ 321 (592)
T 3ogk_B 242 AANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLE 321 (592)
T ss_dssp CTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCTTTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCC
T ss_pred hhHHHhhcccccccccchHHHHHHhhccccccccCccccchhHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCC
Confidence 7777777665321 12223444445556666666665544 2223345566666
Q ss_pred EEEccCCccccccchhhhcCCCCCcEEEEec-----------cCCcccc---CCCcCccccccc-ceeecCCcccccccc
Q 040192 152 CLNLEETWRLTVIPRRLISSFSSLHVLRIFG-----------SGYSYSD---GMIGNGEFEQLC-GFRRSKSLDVSALAD 216 (386)
Q Consensus 152 ~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~-----------~~~~~~~---~~~~l~~L~~L~-~~~~~~~~~~~~l~~ 216 (386)
.|+++.+ ........+...+++|++|+++. +.++... ....+++|+.|. .+..+.+.....+..
T Consensus 322 ~L~L~~~-~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~ 400 (592)
T 3ogk_B 322 VLETRNV-IGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGT 400 (592)
T ss_dssp EEEEEGG-GHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHH
T ss_pred EEeccCc-cCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHh
Confidence 6666533 22221122235566666666662 2222220 012244555554 233333333444443
Q ss_pred -ccCCcEEEeec---cCCccchh----c-ccccccccCccccccCcccEEEecCCCC-CCc--cccc-cCCCCCcEEeec
Q 040192 217 -LKRLNRLKIAE---CYGLAELK----M-DYKSVVQNTGQSFVFHSLKKFQISYCKE-LKD--LTFL-IFAPNLKSIEVD 283 (386)
Q Consensus 217 -~~~L~~L~l~~---~~~~~~~~----~-~~~~~~~~~~~~~~~~~L~~L~l~~~~~-l~~--~~~l-~~l~~L~~L~l~ 283 (386)
+++|++|++++ ++.+...+ . ..+. .+++|++|+++.|.+ +++ +..+ ..+++|+.|+|+
T Consensus 401 ~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~---------~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~ 471 (592)
T 3ogk_B 401 YLKNLCDFRLVLLDREERITDLPLDNGVRSLLI---------GCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLG 471 (592)
T ss_dssp HCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHH---------HCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEEC
T ss_pred hCCCCcEEEEeecCCCccccCchHHHHHHHHHH---------hCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeecc
Confidence 66777777763 22332211 0 0111 577888888876643 333 2223 347888888888
Q ss_pred CCCccchhhccCcccccCCCCcccccceeeecccccccc--ccCCCcCCCCccEEeecCcccCcCC
Q 040192 284 SCYALEEIVSDVPEVMMGNLNPFAQFHFLCFSYLPNLKS--IYRKPLPFPHLKEMKVIHCLKLKKL 347 (386)
Q Consensus 284 ~c~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~--~~~~~~~~~~L~~L~i~~c~~L~~l 347 (386)
+|. +++.... ..+..+++|++|+|++|+ +.. ++.....+++|++|++++|+ ++.-
T Consensus 472 ~n~-l~~~~~~------~~~~~~~~L~~L~l~~n~-l~~~~~~~~~~~l~~L~~L~ls~n~-it~~ 528 (592)
T 3ogk_B 472 YVG-ESDEGLM------EFSRGCPNLQKLEMRGCC-FSERAIAAAVTKLPSLRYLWVQGYR-ASMT 528 (592)
T ss_dssp SCC-SSHHHHH------HHHTCCTTCCEEEEESCC-CBHHHHHHHHHHCSSCCEEEEESCB-CCTT
T ss_pred CCC-CCHHHHH------HHHhcCcccCeeeccCCC-CcHHHHHHHHHhcCccCeeECcCCc-CCHH
Confidence 865 5442221 134567899999999996 443 23233468999999999986 6653
No 87
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.72 E-value=5.4e-18 Score=161.96 Aligned_cols=300 Identities=18% Similarity=0.124 Sum_probs=194.3
Q ss_pred cccEEEEcCCCCCCC--Ccccc-cc---cCccEEEecCCcccc-----cCCC-CCCCCCcEEecccCcCCCcCCh-----
Q 040192 32 KEEHLVYAGAGLSET--PDVRK-WE---KNVRRLSLMENQIEN-----LSEV-PTCPYLRTLFLNNNAPLRRIDS----- 94 (386)
Q Consensus 32 ~~~~l~~~~~~l~~~--p~~~~-~~---~~L~~L~l~~~~~~~-----~~~~-~~~~~L~~L~l~~~~~~~~~~~----- 94 (386)
....+.+.+..+.+. ..+.. ++ .++++|++++|.+.. ++.. ..+++|++|++++| .+.+...
T Consensus 57 ~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n-~i~~~~~~~l~~ 135 (461)
T 1z7x_W 57 ALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDN-LLGDAGLQLLCE 135 (461)
T ss_dssp TCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSS-BCHHHHHHHHHH
T ss_pred CcCEEeCCCCcCChHHHHHHHHHHhhCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCC-cCchHHHHHHHH
Confidence 477888888776542 22222 21 159999999998884 2332 78899999999998 5553322
Q ss_pred hhhcCCCcCceecccCCccccc-----cchhhcCCCccCEEEcCCCCCCccc-Hhhh-----ccCCCCEEEccCCccccc
Q 040192 95 GFFQSMPRLNVLNLSGAIRLYS-----FPLGISKLISLQHLDLSNTGIAELP-KELN-----ALVNLTCLNLEETWRLTV 163 (386)
Q Consensus 95 ~~~~~l~~L~~L~l~~~~~~~~-----~~~~~~~l~~L~~L~l~~~~i~~l~-~~~~-----~l~~L~~L~l~~~~~~~~ 163 (386)
......++|++|++++| .+.. ++..+..+++|+.|++++|.++... ..+. ..++|+.|++++|.....
T Consensus 136 ~l~~~~~~L~~L~L~~n-~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~ 214 (461)
T 1z7x_W 136 GLLDPQCRLEKLQLEYC-SLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSD 214 (461)
T ss_dssp HHTSTTCCCCEEECTTS-CCBGGGHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTT
T ss_pred HHhcCCCcceEEECCCC-CCCHHHHHHHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHH
Confidence 22233567999999998 6663 3556677899999999999876321 2222 356899999999944332
Q ss_pred ----cchhhhcCCCCCcEEEEeccCCcccc-------CCCcCccccccc-ceeecCCc----cccccccccCCcEEEeec
Q 040192 164 ----IPRRLISSFSSLHVLRIFGSGYSYSD-------GMIGNGEFEQLC-GFRRSKSL----DVSALADLKRLNRLKIAE 227 (386)
Q Consensus 164 ----~~~~~l~~l~~L~~L~l~~~~~~~~~-------~~~~l~~L~~L~-~~~~~~~~----~~~~l~~~~~L~~L~l~~ 227 (386)
++.. +..+++|++|++++|.+.... ....++.|+.|. ..+.+.+. .+..+..+++|++|++++
T Consensus 215 ~~~~l~~~-l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~ 293 (461)
T 1z7x_W 215 NCRDLCGI-VASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAG 293 (461)
T ss_dssp HHHHHHHH-HHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTT
T ss_pred HHHHHHHH-HHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCC
Confidence 3443 678899999999998776541 112356666665 22233221 244566689999999999
Q ss_pred cCCccchhcccccccccCccccccCcccEEEecCCCCCCcc------ccccCCCCCcEEeecCCCccchhhccCcccccC
Q 040192 228 CYGLAELKMDYKSVVQNTGQSFVFHSLKKFQISYCKELKDL------TFLIFAPNLKSIEVDSCYALEEIVSDVPEVMMG 301 (386)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~------~~l~~l~~L~~L~l~~c~~~~~~~~~~~~~~~~ 301 (386)
|.... .....+...-.. ..++|+.|++++|. ++.. ..+..+++|++|++++|. +++.....-.. .
T Consensus 294 n~i~~-~~~~~l~~~l~~----~~~~L~~L~L~~n~-l~~~~~~~l~~~l~~~~~L~~L~Ls~n~-i~~~~~~~l~~--~ 364 (461)
T 1z7x_W 294 NELGD-EGARLLCETLLE----PGCQLESLWVKSCS-FTAACCSHFSSVLAQNRFLLELQISNNR-LEDAGVRELCQ--G 364 (461)
T ss_dssp CCCHH-HHHHHHHHHHTS----TTCCCCEEECTTSC-CBGGGHHHHHHHHHHCSSCCEEECCSSB-CHHHHHHHHHH--H
T ss_pred CCCch-HHHHHHHHHhcc----CCccceeeEcCCCC-CchHHHHHHHHHHhhCCCccEEEccCCc-cccccHHHHHH--H
Confidence 96543 222222110000 34799999999995 5543 235678999999999974 66553320000 0
Q ss_pred CCCcccccceeeeccccccc-----cccCCCcCCCCccEEeecCcccCc
Q 040192 302 NLNPFAQFHFLCFSYLPNLK-----SIYRKPLPFPHLKEMKVIHCLKLK 345 (386)
Q Consensus 302 ~~~~~~~L~~L~l~~~~~l~-----~~~~~~~~~~~L~~L~i~~c~~L~ 345 (386)
.....++|++|++++| .+. .++.....+++|++|++++| .+.
T Consensus 365 l~~~~~~L~~L~L~~n-~i~~~~~~~l~~~l~~~~~L~~L~l~~N-~i~ 411 (461)
T 1z7x_W 365 LGQPGSVLRVLWLADC-DVSDSSCSSLAATLLANHSLRELDLSNN-CLG 411 (461)
T ss_dssp HTSTTCCCCEEECTTS-CCCHHHHHHHHHHHHHCCCCCEEECCSS-SCC
T ss_pred HcCCCCceEEEECCCC-CCChhhHHHHHHHHHhCCCccEEECCCC-CCC
Confidence 1112679999999999 555 45555566899999999986 344
No 88
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.71 E-value=3.2e-17 Score=160.73 Aligned_cols=136 Identities=21% Similarity=0.363 Sum_probs=76.9
Q ss_pred CCCCCCcccccccCccEEEecCCcccccCCCCCCCCCcEEecccCcCCCcCChhhhcCCCcCceecccCCccccccchhh
Q 040192 42 GLSETPDVRKWEKNVRRLSLMENQIENLSEVPTCPYLRTLFLNNNAPLRRIDSGFFQSMPRLNVLNLSGAIRLYSFPLGI 121 (386)
Q Consensus 42 ~l~~~p~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~ 121 (386)
.+.++.....++ +|+.|++++|.+..++....+++|+.|++++| .+..+++ +..+++|+.|++++| .+..++ .+
T Consensus 32 ~i~~~~~~~~L~-~L~~L~l~~n~i~~l~~l~~l~~L~~L~Ls~N-~l~~~~~--l~~l~~L~~L~Ls~N-~l~~l~-~l 105 (605)
T 1m9s_A 32 SVTDAVTQNELN-SIDQIIANNSDIKSVQGIQYLPNVTKLFLNGN-KLTDIKP--LTNLKNLGWLFLDEN-KIKDLS-SL 105 (605)
T ss_dssp CTTSEECHHHHT-TCCCCBCTTCCCCCCTTGGGCTTCCEEECTTS-CCCCCGG--GGGCTTCCEEECCSS-CCCCCT-TS
T ss_pred CcccccchhcCC-CCCEEECcCCCCCCChHHccCCCCCEEEeeCC-CCCCChh--hccCCCCCEEECcCC-CCCCCh-hh
Confidence 344444455555 66666666666666655566666666666666 4555444 456666666666666 555543 45
Q ss_pred cCCCccCEEEcCCCCCCcccHhhhccCCCCEEEccCCccccccchhhhcCCCCCcEEEEeccCCcc
Q 040192 122 SKLISLQHLDLSNTGIAELPKELNALVNLTCLNLEETWRLTVIPRRLISSFSSLHVLRIFGSGYSY 187 (386)
Q Consensus 122 ~~l~~L~~L~l~~~~i~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~ 187 (386)
..+++|+.|++++|.+..++ .+..+++|+.|++++| .+..++. +..+++|+.|++++|.+..
T Consensus 106 ~~l~~L~~L~Ls~N~l~~l~-~l~~l~~L~~L~Ls~N-~l~~l~~--l~~l~~L~~L~Ls~N~l~~ 167 (605)
T 1m9s_A 106 KDLKKLKSLSLEHNGISDIN-GLVHLPQLESLYLGNN-KITDITV--LSRLTKLDTLSLEDNQISD 167 (605)
T ss_dssp TTCTTCCEEECTTSCCCCCG-GGGGCTTCSEEECCSS-CCCCCGG--GGSCTTCSEEECCSSCCCC
T ss_pred ccCCCCCEEEecCCCCCCCc-cccCCCccCEEECCCC-ccCCchh--hcccCCCCEEECcCCcCCC
Confidence 55666666666666665543 3555566666666665 3333322 5555566666665554444
No 89
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.70 E-value=4.8e-18 Score=158.60 Aligned_cols=38 Identities=24% Similarity=0.183 Sum_probs=22.9
Q ss_pred cCCCccCEEEcCCCCCCc-----ccHhhhccCCCCEEEccCCc
Q 040192 122 SKLISLQHLDLSNTGIAE-----LPKELNALVNLTCLNLEETW 159 (386)
Q Consensus 122 ~~l~~L~~L~l~~~~i~~-----l~~~~~~l~~L~~L~l~~~~ 159 (386)
..+++|++|++++|.++. ++..+..+++|++|++++|.
T Consensus 91 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~ 133 (386)
T 2ca6_A 91 LKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNG 133 (386)
T ss_dssp TTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSC
T ss_pred hhCCcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCC
Confidence 455666666666666553 44555566666666666663
No 90
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.70 E-value=2.4e-16 Score=141.17 Aligned_cols=181 Identities=20% Similarity=0.303 Sum_probs=149.8
Q ss_pred EcCCCCCCCCcccccccCccEEEecCCcccccCCCCCCCCCcEEecccCcCCCcCChhhhcCCCcCceecccCCcccccc
Q 040192 38 YAGAGLSETPDVRKWEKNVRRLSLMENQIENLSEVPTCPYLRTLFLNNNAPLRRIDSGFFQSMPRLNVLNLSGAIRLYSF 117 (386)
Q Consensus 38 ~~~~~l~~~p~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~ 117 (386)
+.+..+.++.....++ +++.|++++|.+..++....+++|+.|++++| .+..+++ +..+++|++|++++| .+..+
T Consensus 31 l~~~~~~~~~~~~~l~-~L~~L~l~~~~i~~~~~~~~l~~L~~L~L~~n-~l~~~~~--l~~l~~L~~L~l~~n-~l~~~ 105 (291)
T 1h6t_A 31 LKKKSVTDAVTQNELN-SIDQIIANNSDIKSVQGIQYLPNVTKLFLNGN-KLTDIKP--LANLKNLGWLFLDEN-KVKDL 105 (291)
T ss_dssp TTCSCTTSEECHHHHH-TCCEEECTTSCCCCCTTGGGCTTCCEEECCSS-CCCCCGG--GTTCTTCCEEECCSS-CCCCG
T ss_pred hcCCCcccccchhhcC-cccEEEccCCCcccChhHhcCCCCCEEEccCC-ccCCCcc--cccCCCCCEEECCCC-cCCCC
Confidence 3444555566677888 99999999999999888889999999999999 7777776 789999999999999 88876
Q ss_pred chhhcCCCccCEEEcCCCCCCcccHhhhccCCCCEEEccCCccccccchhhhcCCCCCcEEEEeccCCccccCCCcCccc
Q 040192 118 PLGISKLISLQHLDLSNTGIAELPKELNALVNLTCLNLEETWRLTVIPRRLISSFSSLHVLRIFGSGYSYSDGMIGNGEF 197 (386)
Q Consensus 118 ~~~~~~l~~L~~L~l~~~~i~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~L 197 (386)
+ .+..+++|++|++++|.++.++ .+..+++|+.|++++| .+..++. +..+++|+.|++++|.+...
T Consensus 106 ~-~l~~l~~L~~L~L~~n~i~~~~-~l~~l~~L~~L~l~~n-~l~~~~~--l~~l~~L~~L~L~~N~l~~~--------- 171 (291)
T 1h6t_A 106 S-SLKDLKKLKSLSLEHNGISDIN-GLVHLPQLESLYLGNN-KITDITV--LSRLTKLDTLSLEDNQISDI--------- 171 (291)
T ss_dssp G-GGTTCTTCCEEECTTSCCCCCG-GGGGCTTCCEEECCSS-CCCCCGG--GGGCTTCSEEECCSSCCCCC---------
T ss_pred h-hhccCCCCCEEECCCCcCCCCh-hhcCCCCCCEEEccCC-cCCcchh--hccCCCCCEEEccCCccccc---------
Confidence 5 4889999999999999999874 6788999999999999 5566643 89999999999999987765
Q ss_pred ccccceeecCCccccccccccCCcEEEeeccCCccchhcccccccccCccccccCcccEEEecCCC
Q 040192 198 EQLCGFRRSKSLDVSALADLKRLNRLKIAECYGLAELKMDYKSVVQNTGQSFVFHSLKKFQISYCK 263 (386)
Q Consensus 198 ~~L~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 263 (386)
..+..+++|+.|++++|.... ++ .+. .+++|+.|++++|+
T Consensus 172 --------------~~l~~l~~L~~L~L~~N~i~~-l~--~l~---------~l~~L~~L~l~~n~ 211 (291)
T 1h6t_A 172 --------------VPLAGLTKLQNLYLSKNHISD-LR--ALA---------GLKNLDVLELFSQE 211 (291)
T ss_dssp --------------GGGTTCTTCCEEECCSSCCCB-CG--GGT---------TCTTCSEEEEEEEE
T ss_pred --------------hhhcCCCccCEEECCCCcCCC-Ch--hhc---------cCCCCCEEECcCCc
Confidence 115567899999999986654 32 233 78999999999984
No 91
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.69 E-value=5.9e-16 Score=135.57 Aligned_cols=174 Identities=18% Similarity=0.224 Sum_probs=127.3
Q ss_pred CccEEEecCCcccccCCCCCCCCCcEEecccCcCCCcCChhhhcCCCcCceecccCCcccccc-chhhcCCCccCEEEcC
Q 040192 55 NVRRLSLMENQIENLSEVPTCPYLRTLFLNNNAPLRRIDSGFFQSMPRLNVLNLSGAIRLYSF-PLGISKLISLQHLDLS 133 (386)
Q Consensus 55 ~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~-~~~~~~l~~L~~L~l~ 133 (386)
+.++++++++.+..+|... .++++.|++++| .+..+++..+..+++|++|++++| .+..+ +..+..+++|++|+++
T Consensus 15 ~~~~l~~~~~~l~~~p~~~-~~~l~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~ 91 (251)
T 3m19_A 15 GKKEVDCQGKSLDSVPSGI-PADTEKLDLQST-GLATLSDATFRGLTKLTWLNLDYN-QLQTLSAGVFDDLTELGTLGLA 91 (251)
T ss_dssp GGTEEECTTCCCSSCCSCC-CTTCCEEECTTS-CCCCCCTTTTTTCTTCCEEECTTS-CCCCCCTTTTTTCTTCCEEECT
T ss_pred CCeEEecCCCCccccCCCC-CCCCCEEEccCC-CcCccCHhHhcCcccCCEEECCCC-cCCccCHhHhccCCcCCEEECC
Confidence 5678888888888877642 268888999888 677776666788888999999888 77766 4457888888888888
Q ss_pred CCCCCcccH-hhhccCCCCEEEccCCccccccchhhhcCCCCCcEEEEeccCCccccCCCcCcccccccceeecCCcccc
Q 040192 134 NTGIAELPK-ELNALVNLTCLNLEETWRLTVIPRRLISSFSSLHVLRIFGSGYSYSDGMIGNGEFEQLCGFRRSKSLDVS 212 (386)
Q Consensus 134 ~~~i~~l~~-~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~L~~~~~~~~~~~~ 212 (386)
+|.++.++. .+..+++|+.|++++| .+..++...+..+++|++|++++|.+... ...
T Consensus 92 ~n~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~---------------------~~~ 149 (251)
T 3m19_A 92 NNQLASLPLGVFDHLTQLDKLYLGGN-QLKSLPSGVFDRLTKLKELRLNTNQLQSI---------------------PAG 149 (251)
T ss_dssp TSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCCCC---------------------CTT
T ss_pred CCcccccChhHhcccCCCCEEEcCCC-cCCCcChhHhccCCcccEEECcCCcCCcc---------------------CHH
Confidence 888887763 4577888888888888 55667766577888888888888876654 112
Q ss_pred ccccccCCcEEEeeccCCccchhcccccccccCccccccCcccEEEecCCC
Q 040192 213 ALADLKRLNRLKIAECYGLAELKMDYKSVVQNTGQSFVFHSLKKFQISYCK 263 (386)
Q Consensus 213 ~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 263 (386)
.+..+++|+.|++++|+... .+...+. .+++|+.|++++|+
T Consensus 150 ~~~~l~~L~~L~L~~N~l~~-~~~~~~~---------~l~~L~~L~l~~N~ 190 (251)
T 3m19_A 150 AFDKLTNLQTLSLSTNQLQS-VPHGAFD---------RLGKLQTITLFGNQ 190 (251)
T ss_dssp TTTTCTTCCEEECCSSCCSC-CCTTTTT---------TCTTCCEEECCSCC
T ss_pred HcCcCcCCCEEECCCCcCCc-cCHHHHh---------CCCCCCEEEeeCCc
Confidence 34556778888887775543 3333333 56777777777774
No 92
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.69 E-value=2.6e-17 Score=152.17 Aligned_cols=252 Identities=14% Similarity=0.111 Sum_probs=156.1
Q ss_pred EEcCCCCCC-CCcccccccCccEEEecCCcccccCC------CCCCC-CCcEEecccCcCCCcCChhhhcCC-----CcC
Q 040192 37 VYAGAGLSE-TPDVRKWEKNVRRLSLMENQIENLSE------VPTCP-YLRTLFLNNNAPLRRIDSGFFQSM-----PRL 103 (386)
Q Consensus 37 ~~~~~~l~~-~p~~~~~~~~L~~L~l~~~~~~~~~~------~~~~~-~L~~L~l~~~~~~~~~~~~~~~~l-----~~L 103 (386)
.++..++.+ +|.+...+.++++|++++|.+.+.+. ...++ +|++|++++| .++......+..+ ++|
T Consensus 4 ~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N-~l~~~~~~~l~~~l~~~~~~L 82 (362)
T 3goz_A 4 KLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGN-SLGFKNSDELVQILAAIPANV 82 (362)
T ss_dssp ECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSS-CGGGSCHHHHHHHHHTSCTTC
T ss_pred ccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCC-CCCHHHHHHHHHHHhccCCCc
Confidence 344445553 35555556358999999988887543 15666 8999999988 6766654444443 889
Q ss_pred ceecccCCcccccc-chh----hcCC-CccCEEEcCCCCCCcccH-h----hhc-cCCCCEEEccCCcccc----ccchh
Q 040192 104 NVLNLSGAIRLYSF-PLG----ISKL-ISLQHLDLSNTGIAELPK-E----LNA-LVNLTCLNLEETWRLT----VIPRR 167 (386)
Q Consensus 104 ~~L~l~~~~~~~~~-~~~----~~~l-~~L~~L~l~~~~i~~l~~-~----~~~-l~~L~~L~l~~~~~~~----~~~~~ 167 (386)
++|++++| .++.. +.. +..+ ++|+.|++++|.++..+. . +.. .++|++|++++|.... .++..
T Consensus 83 ~~L~Ls~n-~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~ 161 (362)
T 3goz_A 83 TSLNLSGN-FLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQI 161 (362)
T ss_dssp CEEECCSS-CGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHH
T ss_pred cEEECcCC-cCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHH
Confidence 99999888 67644 332 3444 788999999888875542 2 223 3688999998884432 22232
Q ss_pred hhcCCC-CCcEEEEeccCCccccCCCcCcccccccceeecCCccccccccc-cCCcEEEeeccCCccchh---ccccccc
Q 040192 168 LISSFS-SLHVLRIFGSGYSYSDGMIGNGEFEQLCGFRRSKSLDVSALADL-KRLNRLKIAECYGLAELK---MDYKSVV 242 (386)
Q Consensus 168 ~l~~l~-~L~~L~l~~~~~~~~~~~~~l~~L~~L~~~~~~~~~~~~~l~~~-~~L~~L~l~~~~~~~~~~---~~~~~~~ 242 (386)
+..++ +|++|++++|.+....... ....+..+ ++|++|++++|....... ...+..
T Consensus 162 -l~~~~~~L~~L~Ls~n~l~~~~~~~-----------------l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~- 222 (362)
T 3goz_A 162 -LAAIPANVNSLNLRGNNLASKNCAE-----------------LAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSS- 222 (362)
T ss_dssp -HHTSCTTCCEEECTTSCGGGSCHHH-----------------HHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHH-
T ss_pred -HhcCCccccEeeecCCCCchhhHHH-----------------HHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhc-
Confidence 45554 8889998888776651100 01223344 489999999886543110 111110
Q ss_pred ccCccccccCcccEEEecCCCCCCccc------cccCCCCCcEEeecCCCccchhhccCcccccCCCCcccccceeeecc
Q 040192 243 QNTGQSFVFHSLKKFQISYCKELKDLT------FLIFAPNLKSIEVDSCYALEEIVSDVPEVMMGNLNPFAQFHFLCFSY 316 (386)
Q Consensus 243 ~~~~~~~~~~~L~~L~l~~~~~l~~~~------~l~~l~~L~~L~l~~c~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~ 316 (386)
..++|+.|++++| .+++.+ ....+++|+.|++++|. +..+..+....-...+..+++|+.|++++
T Consensus 223 -------~~~~L~~L~Ls~N-~l~~~~~~~l~~~~~~l~~L~~L~L~~n~-l~~i~~~~~~~l~~~~~~l~~L~~LdL~~ 293 (362)
T 3goz_A 223 -------IPNHVVSLNLCLN-CLHGPSLENLKLLKDSLKHLQTVYLDYDI-VKNMSKEQCKALGAAFPNIQKIILVDKNG 293 (362)
T ss_dssp -------SCTTCCEEECCSS-CCCCCCHHHHHHTTTTTTTCSEEEEEHHH-HTTCCHHHHHHHHTTSTTCCEEEEECTTS
T ss_pred -------CCCCceEEECcCC-CCCcHHHHHHHHHHhcCCCccEEEeccCC-ccccCHHHHHHHHHHhccCCceEEEecCC
Confidence 2468999999998 466542 23667889999998865 22221100000012566778888899988
Q ss_pred cc
Q 040192 317 LP 318 (386)
Q Consensus 317 ~~ 318 (386)
+.
T Consensus 294 N~ 295 (362)
T 3goz_A 294 KE 295 (362)
T ss_dssp CB
T ss_pred Cc
Confidence 84
No 93
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.68 E-value=5e-17 Score=151.65 Aligned_cols=232 Identities=17% Similarity=0.166 Sum_probs=167.3
Q ss_pred ccccccCccEEEecCCccccc-----CC-CCCCCCCcEEecccCcCCC----cCChhh------hcCCCcCceecccCCc
Q 040192 49 VRKWEKNVRRLSLMENQIENL-----SE-VPTCPYLRTLFLNNNAPLR----RIDSGF------FQSMPRLNVLNLSGAI 112 (386)
Q Consensus 49 ~~~~~~~L~~L~l~~~~~~~~-----~~-~~~~~~L~~L~l~~~~~~~----~~~~~~------~~~l~~L~~L~l~~~~ 112 (386)
+...+ ++++|++++|.+... .. ...+++|++|++++| .+. .+|..+ +..+++|++|++++|
T Consensus 28 l~~~~-~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~-~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n- 104 (386)
T 2ca6_A 28 LLEDD-SVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDI-FTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDN- 104 (386)
T ss_dssp HHHCS-CCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSC-CTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSC-
T ss_pred HhcCC-CccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCccc-ccCccccchhHHHHHHHHHHhhCCcccEEECCCC-
Confidence 55667 899999999988862 11 368999999999997 444 233332 378999999999999
Q ss_pred cccc-----cchhhcCCCccCEEEcCCCCCCc-----ccHhhhcc---------CCCCEEEccCCccc-cccch--hhhc
Q 040192 113 RLYS-----FPLGISKLISLQHLDLSNTGIAE-----LPKELNAL---------VNLTCLNLEETWRL-TVIPR--RLIS 170 (386)
Q Consensus 113 ~~~~-----~~~~~~~l~~L~~L~l~~~~i~~-----l~~~~~~l---------~~L~~L~l~~~~~~-~~~~~--~~l~ 170 (386)
.++. ++..+..+++|++|++++|.++. ++..+..+ ++|++|++++|... ..++. ..+.
T Consensus 105 ~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~ 184 (386)
T 2ca6_A 105 AFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQ 184 (386)
T ss_dssp CCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHH
Confidence 7765 57788899999999999999862 23334444 89999999999543 23442 2367
Q ss_pred CCCCCcEEEEeccCCccccCCCcCcccccccceeecCCccccccccccCCcEEEeeccCCc----cchhcccccccccCc
Q 040192 171 SFSSLHVLRIFGSGYSYSDGMIGNGEFEQLCGFRRSKSLDVSALADLKRLNRLKIAECYGL----AELKMDYKSVVQNTG 246 (386)
Q Consensus 171 ~l~~L~~L~l~~~~~~~~~~~~~l~~L~~L~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~----~~~~~~~~~~~~~~~ 246 (386)
.+++|+.|++++|.+...+.... .+..+..+++|+.|++++|... ..+ +..+.
T Consensus 185 ~~~~L~~L~L~~n~l~~~g~~~l----------------~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l-~~~l~------ 241 (386)
T 2ca6_A 185 SHRLLHTVKMVQNGIRPEGIEHL----------------LLEGLAYCQELKVLDLQDNTFTHLGSSAL-AIALK------ 241 (386)
T ss_dssp HCTTCCEEECCSSCCCHHHHHHH----------------HHTTGGGCTTCCEEECCSSCCHHHHHHHH-HHHGG------
T ss_pred hCCCcCEEECcCCCCCHhHHHHH----------------HHHHhhcCCCccEEECcCCCCCcHHHHHH-HHHHc------
Confidence 89999999999998774310000 0124667889999999999764 222 22333
Q ss_pred cccccCcccEEEecCCCCCCcc------ccc--cCCCCCcEEeecCCCccch-----hhccCcccccCCCCcccccceee
Q 040192 247 QSFVFHSLKKFQISYCKELKDL------TFL--IFAPNLKSIEVDSCYALEE-----IVSDVPEVMMGNLNPFAQFHFLC 313 (386)
Q Consensus 247 ~~~~~~~L~~L~l~~~~~l~~~------~~l--~~l~~L~~L~l~~c~~~~~-----~~~~~~~~~~~~~~~~~~L~~L~ 313 (386)
.+++|++|++++|. ++.. ..+ +.+++|++|+|++|. ++. ++. .....+++|++|+
T Consensus 242 ---~~~~L~~L~L~~n~-i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~-i~~~g~~~l~~-------~l~~~l~~L~~L~ 309 (386)
T 2ca6_A 242 ---SWPNLRELGLNDCL-LSARGAAAVVDAFSKLENIGLQTLRLQYNE-IELDAVRTLKT-------VIDEKMPDLLFLE 309 (386)
T ss_dssp ---GCTTCCEEECTTCC-CCHHHHHHHHHHHHTCSSCCCCEEECCSSC-CBHHHHHHHHH-------HHHHHCTTCCEEE
T ss_pred ---cCCCcCEEECCCCC-CchhhHHHHHHHHhhccCCCeEEEECcCCc-CCHHHHHHHHH-------HHHhcCCCceEEE
Confidence 68999999999994 6653 233 348999999999976 555 433 1224579999999
Q ss_pred ecccc
Q 040192 314 FSYLP 318 (386)
Q Consensus 314 l~~~~ 318 (386)
+++|+
T Consensus 310 l~~N~ 314 (386)
T 2ca6_A 310 LNGNR 314 (386)
T ss_dssp CTTSB
T ss_pred ccCCc
Confidence 99984
No 94
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.68 E-value=1.3e-16 Score=144.28 Aligned_cols=77 Identities=17% Similarity=0.151 Sum_probs=36.8
Q ss_pred ccCcccEEEecCCCCCCcc--ccccCC---CCCcEEeecCCCccchhhccCcccccCCCCcccccceeeecccccccccc
Q 040192 250 VFHSLKKFQISYCKELKDL--TFLIFA---PNLKSIEVDSCYALEEIVSDVPEVMMGNLNPFAQFHFLCFSYLPNLKSIY 324 (386)
Q Consensus 250 ~~~~L~~L~l~~~~~l~~~--~~l~~l---~~L~~L~l~~c~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~ 324 (386)
.+++|++|++++|. ++.. +.+..+ ++|++|++++|. ++.++. .+ +++|++|+++++ .+..++
T Consensus 222 ~l~~L~~L~Ls~N~-l~~~~p~~~~~~~~~~~L~~L~Ls~N~-l~~lp~--------~~--~~~L~~L~Ls~N-~l~~~~ 288 (310)
T 4glp_A 222 AGVQPHSLDLSHNS-LRATVNPSAPRCMWSSALNSLNLSFAG-LEQVPK--------GL--PAKLRVLDLSSN-RLNRAP 288 (310)
T ss_dssp HTCCCSSEECTTSC-CCCCCCSCCSSCCCCTTCCCEECCSSC-CCSCCS--------CC--CSCCSCEECCSC-CCCSCC
T ss_pred cCCCCCEEECCCCC-CCccchhhHHhccCcCcCCEEECCCCC-CCchhh--------hh--cCCCCEEECCCC-cCCCCc
Confidence 34555555555552 3332 122222 456666665533 444322 11 255666666665 444443
Q ss_pred CCCcCCCCccEEeecC
Q 040192 325 RKPLPFPHLKEMKVIH 340 (386)
Q Consensus 325 ~~~~~~~~L~~L~i~~ 340 (386)
. ...+++|+.|++++
T Consensus 289 ~-~~~l~~L~~L~L~~ 303 (310)
T 4glp_A 289 Q-PDELPEVDNLTLDG 303 (310)
T ss_dssp C-TTSCCCCSCEECSS
T ss_pred h-hhhCCCccEEECcC
Confidence 3 34456666666655
No 95
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.67 E-value=2e-16 Score=146.32 Aligned_cols=252 Identities=16% Similarity=0.105 Sum_probs=171.2
Q ss_pred EEecCCcccc-cCCC-CCCCCCcEEecccCcCCCcCCh----hhhcCCC-cCceecccCCcccccc-chhhcCC-----C
Q 040192 59 LSLMENQIEN-LSEV-PTCPYLRTLFLNNNAPLRRIDS----GFFQSMP-RLNVLNLSGAIRLYSF-PLGISKL-----I 125 (386)
Q Consensus 59 L~l~~~~~~~-~~~~-~~~~~L~~L~l~~~~~~~~~~~----~~~~~l~-~L~~L~l~~~~~~~~~-~~~~~~l-----~ 125 (386)
+.++.+.+++ +|.. ...++|+.|++++| .++..+. ..+..++ +|++|++++| .++.. +..+..+ +
T Consensus 3 ~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n-~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N-~l~~~~~~~l~~~l~~~~~ 80 (362)
T 3goz_A 3 YKLTLHPGSNPVEEFTSIPHGVTSLDLSLN-NLYSISTVELIQAFANTPASVTSLNLSGN-SLGFKNSDELVQILAAIPA 80 (362)
T ss_dssp EECCCCTTCCHHHHHHTSCTTCCEEECTTS-CGGGSCHHHHHHHHHTCCTTCCEEECCSS-CGGGSCHHHHHHHHHTSCT
T ss_pred cccccccchHHHHHHHhCCCCceEEEccCC-CCChHHHHHHHHHHHhCCCceeEEECcCC-CCCHHHHHHHHHHHhccCC
Confidence 5677788876 4555 55666999999999 7887775 5578888 8999999999 77754 5555554 8
Q ss_pred ccCEEEcCCCCCCccc-Hh----hhcc-CCCCEEEccCCccccccchhhh----cC-CCCCcEEEEeccCCccccCCCcC
Q 040192 126 SLQHLDLSNTGIAELP-KE----LNAL-VNLTCLNLEETWRLTVIPRRLI----SS-FSSLHVLRIFGSGYSYSDGMIGN 194 (386)
Q Consensus 126 ~L~~L~l~~~~i~~l~-~~----~~~l-~~L~~L~l~~~~~~~~~~~~~l----~~-l~~L~~L~l~~~~~~~~~~~~~l 194 (386)
+|++|++++|.++..+ .. +..+ ++|+.|++++|. ++..+...+ .. .++|++|++++|.+.+.....
T Consensus 81 ~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~-l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~-- 157 (362)
T 3goz_A 81 NVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWND-FSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDE-- 157 (362)
T ss_dssp TCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSC-GGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHH--
T ss_pred CccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCc-CCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHH--
Confidence 9999999999988544 22 4445 899999999995 455443223 33 369999999999887651100
Q ss_pred cccccccceeecCCcccccccccc-CCcEEEeeccCCccchhcccccccccCcccccc-CcccEEEecCCCCCCc-----
Q 040192 195 GEFEQLCGFRRSKSLDVSALADLK-RLNRLKIAECYGLAELKMDYKSVVQNTGQSFVF-HSLKKFQISYCKELKD----- 267 (386)
Q Consensus 195 ~~L~~L~~~~~~~~~~~~~l~~~~-~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~L~~L~l~~~~~l~~----- 267 (386)
....+..++ +|++|++++|+.... ....+... .. .+ ++|+.|++++| .+++
T Consensus 158 ---------------l~~~l~~~~~~L~~L~Ls~n~l~~~-~~~~l~~~-l~----~~~~~L~~L~Ls~N-~i~~~~~~~ 215 (362)
T 3goz_A 158 ---------------LIQILAAIPANVNSLNLRGNNLASK-NCAELAKF-LA----SIPASVTSLDLSAN-LLGLKSYAE 215 (362)
T ss_dssp ---------------HHHHHHTSCTTCCEEECTTSCGGGS-CHHHHHHH-HH----TSCTTCCEEECTTS-CGGGSCHHH
T ss_pred ---------------HHHHHhcCCccccEeeecCCCCchh-hHHHHHHH-HH----hCCCCCCEEECCCC-CCChhHHHH
Confidence 012233444 899999999976542 22221100 00 34 59999999999 4665
Q ss_pred cc-cccC-CCCCcEEeecCCCccchhhccCcccccCCCCcccccceeeecccc-------ccccccCCCcCCCCccEEee
Q 040192 268 LT-FLIF-APNLKSIEVDSCYALEEIVSDVPEVMMGNLNPFAQFHFLCFSYLP-------NLKSIYRKPLPFPHLKEMKV 338 (386)
Q Consensus 268 ~~-~l~~-l~~L~~L~l~~c~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~-------~l~~~~~~~~~~~~L~~L~i 338 (386)
++ .+.. .++|++|+|++|. +++.....-. ..+..+++|++|++++|. .+..+......+++|+.|++
T Consensus 216 l~~~l~~~~~~L~~L~Ls~N~-l~~~~~~~l~---~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL 291 (362)
T 3goz_A 216 LAYIFSSIPNHVVSLNLCLNC-LHGPSLENLK---LLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDK 291 (362)
T ss_dssp HHHHHHHSCTTCCEEECCSSC-CCCCCHHHHH---HTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECT
T ss_pred HHHHHhcCCCCceEEECcCCC-CCcHHHHHHH---HHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEec
Confidence 22 2333 4699999999965 5554321000 245778899999999984 13334445567888999999
Q ss_pred cCc
Q 040192 339 IHC 341 (386)
Q Consensus 339 ~~c 341 (386)
+++
T Consensus 292 ~~N 294 (362)
T 3goz_A 292 NGK 294 (362)
T ss_dssp TSC
T ss_pred CCC
Confidence 875
No 96
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.67 E-value=6.2e-16 Score=130.22 Aligned_cols=152 Identities=19% Similarity=0.255 Sum_probs=128.6
Q ss_pred ccccccCccEEEecCCcccccCCCCCCCCCcEEecccCcCCCcCChhhhcCCCcCceecccCCccccc-cchhhcCCCcc
Q 040192 49 VRKWEKNVRRLSLMENQIENLSEVPTCPYLRTLFLNNNAPLRRIDSGFFQSMPRLNVLNLSGAIRLYS-FPLGISKLISL 127 (386)
Q Consensus 49 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~-~~~~~~~l~~L 127 (386)
...++ ++++|++++|.+..++....+++|++|++++| .+..++. +..+++|++|++++| .+.. .+..++.+++|
T Consensus 40 ~~~l~-~L~~L~l~~n~i~~l~~l~~l~~L~~L~l~~n-~~~~~~~--l~~l~~L~~L~l~~n-~l~~~~~~~l~~l~~L 114 (197)
T 4ezg_A 40 EAQMN-SLTYITLANINVTDLTGIEYAHNIKDLTINNI-HATNYNP--ISGLSNLERLRIMGK-DVTSDKIPNLSGLTSL 114 (197)
T ss_dssp HHHHH-TCCEEEEESSCCSCCTTGGGCTTCSEEEEESC-CCSCCGG--GTTCTTCCEEEEECT-TCBGGGSCCCTTCTTC
T ss_pred hhhcC-CccEEeccCCCccChHHHhcCCCCCEEEccCC-CCCcchh--hhcCCCCCEEEeECC-ccCcccChhhcCCCCC
Confidence 46677 99999999999999887789999999999999 6666653 789999999999999 7774 57788899999
Q ss_pred CEEEcCCCCCCc-ccHhhhccCCCCEEEccCCccccccchhhhcCCCCCcEEEEeccCCccccCCCcCcccccccceeec
Q 040192 128 QHLDLSNTGIAE-LPKELNALVNLTCLNLEETWRLTVIPRRLISSFSSLHVLRIFGSGYSYSDGMIGNGEFEQLCGFRRS 206 (386)
Q Consensus 128 ~~L~l~~~~i~~-l~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~L~~~~~~ 206 (386)
++|++++|.++. .+..++.+++|+.|++++|..++.++. +..+++|+.|++++|.+...
T Consensus 115 ~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~~--l~~l~~L~~L~l~~n~i~~~------------------ 174 (197)
T 4ezg_A 115 TLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIMP--LKTLPELKSLNIQFDGVHDY------------------ 174 (197)
T ss_dssp CEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCGG--GGGCSSCCEEECTTBCCCCC------------------
T ss_pred CEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCccccHh--hcCCCCCCEEECCCCCCcCh------------------
Confidence 999999999984 667889999999999999965788874 89999999999999987765
Q ss_pred CCccccccccccCCcEEEeeccCC
Q 040192 207 KSLDVSALADLKRLNRLKIAECYG 230 (386)
Q Consensus 207 ~~~~~~~l~~~~~L~~L~l~~~~~ 230 (386)
..+..+++|+.|++++|+.
T Consensus 175 -----~~l~~l~~L~~L~l~~N~i 193 (197)
T 4ezg_A 175 -----RGIEDFPKLNQLYAFSQTI 193 (197)
T ss_dssp -----TTGGGCSSCCEEEECBC--
T ss_pred -----HHhccCCCCCEEEeeCccc
Confidence 1356678899999998864
No 97
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.66 E-value=4.3e-17 Score=160.66 Aligned_cols=291 Identities=13% Similarity=0.088 Sum_probs=173.3
Q ss_pred cccEEEEcCCC-CC--CCCc-ccccccCccEEEecCCcccccC-----CC-CCCCCCcEEecccCcCCCcCC----hhhh
Q 040192 32 KEEHLVYAGAG-LS--ETPD-VRKWEKNVRRLSLMENQIENLS-----EV-PTCPYLRTLFLNNNAPLRRID----SGFF 97 (386)
Q Consensus 32 ~~~~l~~~~~~-l~--~~p~-~~~~~~~L~~L~l~~~~~~~~~-----~~-~~~~~L~~L~l~~~~~~~~~~----~~~~ 97 (386)
..+.+.+.+.. +. .++. ...++ +|++|++++|.+.+.. .. ..+++|++|++++| .+..+. ...+
T Consensus 139 ~L~~L~L~~~~~~~~~~l~~~~~~~~-~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n-~~~~~~~~~l~~~~ 216 (592)
T 3ogk_B 139 DLETLKLDKCSGFTTDGLLSIVTHCR-KIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMT-EFAKISPKDLETIA 216 (592)
T ss_dssp GCCEEEEESCEEEEHHHHHHHHHHCT-TCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTC-CCSSCCHHHHHHHH
T ss_pred cCcEEECcCCCCcCHHHHHHHHhhCC-CCCEEECccccccCcchhHHHHHHhcCCCccEEEeecc-CCCccCHHHHHHHH
Confidence 36677776543 11 1222 23566 9999999999876532 22 67899999999998 554222 2335
Q ss_pred cCCCcCceecccCCccccccchhhcCCCccCEEEcCCC---------------------------CCCcccHhhhccCCC
Q 040192 98 QSMPRLNVLNLSGAIRLYSFPLGISKLISLQHLDLSNT---------------------------GIAELPKELNALVNL 150 (386)
Q Consensus 98 ~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~---------------------------~i~~l~~~~~~l~~L 150 (386)
..+++|++|++.+| .+..++..+..+++|+.|+++.. ....+|..+..+++|
T Consensus 217 ~~~~~L~~L~L~~~-~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~l~~~~~~~~~L 295 (592)
T 3ogk_B 217 RNCRSLVSVKVGDF-EILELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFAAQI 295 (592)
T ss_dssp HHCTTCCEEECSSC-BGGGGHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCTTTGGGGGGGGGGC
T ss_pred hhCCCCcEEeccCc-cHHHHHHHHhhhhHHHhhcccccccccchHHHHHHhhccccccccCccccchhHHHHHHhhcCCC
Confidence 68999999999998 77777777777888888887632 122344445566677
Q ss_pred CEEEccCCccccccchhhhcCCCCCcEEEEeccCCccc---cCCCcCcccccccc------------eeecCCccccc-c
Q 040192 151 TCLNLEETWRLTVIPRRLISSFSSLHVLRIFGSGYSYS---DGMIGNGEFEQLCG------------FRRSKSLDVSA-L 214 (386)
Q Consensus 151 ~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~---~~~~~l~~L~~L~~------------~~~~~~~~~~~-l 214 (386)
+.|++++|.........++..+++|++|+++. .+... .....+++|+.|.- +....+..... .
T Consensus 296 ~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~-~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~ 374 (592)
T 3ogk_B 296 RKLDLLYALLETEDHCTLIQKCPNLEVLETRN-VIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALA 374 (592)
T ss_dssp CEEEETTCCCCHHHHHHHHTTCTTCCEEEEEG-GGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHH
T ss_pred cEEecCCCcCCHHHHHHHHHhCcCCCEEeccC-ccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHH
Confidence 77777776422222222356677777777762 22222 01123444555541 12222211112 2
Q ss_pred ccccCCcEEEeeccCCccchhcccccccccCccccccCcccEEEecC---CCCCCccc-------cccCCCCCcEEeecC
Q 040192 215 ADLKRLNRLKIAECYGLAELKMDYKSVVQNTGQSFVFHSLKKFQISY---CKELKDLT-------FLIFAPNLKSIEVDS 284 (386)
Q Consensus 215 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~---~~~l~~~~-------~l~~l~~L~~L~l~~ 284 (386)
..+++|++|+++++.... .....+.. .+++|++|++++ |..+++.+ .+..+++|+.|++++
T Consensus 375 ~~~~~L~~L~l~~~~l~~-~~~~~l~~--------~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~ 445 (592)
T 3ogk_B 375 QGCQELEYMAVYVSDITN-ESLESIGT--------YLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYL 445 (592)
T ss_dssp HHCTTCSEEEEEESCCCH-HHHHHHHH--------HCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEEC
T ss_pred hhCccCeEEEeecCCccH-HHHHHHHh--------hCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEec
Confidence 346778888875554433 33333321 478888888873 44565531 134578888888877
Q ss_pred CCc-cchhhccCcccccCCCCcccccceeeecccccccc--ccCCCcCCCCccEEeecCcc
Q 040192 285 CYA-LEEIVSDVPEVMMGNLNPFAQFHFLCFSYLPNLKS--IYRKPLPFPHLKEMKVIHCL 342 (386)
Q Consensus 285 c~~-~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~--~~~~~~~~~~L~~L~i~~c~ 342 (386)
|.. +.+.... .....+++|++|++++| .+.+ ++.....+++|++|+|++|+
T Consensus 446 ~~~~l~~~~~~------~~~~~~~~L~~L~L~~n-~l~~~~~~~~~~~~~~L~~L~l~~n~ 499 (592)
T 3ogk_B 446 RQGGLTDLGLS------YIGQYSPNVRWMLLGYV-GESDEGLMEFSRGCPNLQKLEMRGCC 499 (592)
T ss_dssp CGGGCCHHHHH------HHHHSCTTCCEEEECSC-CSSHHHHHHHHTCCTTCCEEEEESCC
T ss_pred CCCCccHHHHH------HHHHhCccceEeeccCC-CCCHHHHHHHHhcCcccCeeeccCCC
Confidence 653 3332221 12234788999999988 4543 22234568999999999986
No 98
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.66 E-value=3e-16 Score=141.87 Aligned_cols=225 Identities=16% Similarity=0.169 Sum_probs=161.4
Q ss_pred CccEEEecCCcccc--cC---CCCCCCCCcEEecccCcCCC-cCChhhh-cCCCcCceecccCCcccccc-c----hhhc
Q 040192 55 NVRRLSLMENQIEN--LS---EVPTCPYLRTLFLNNNAPLR-RIDSGFF-QSMPRLNVLNLSGAIRLYSF-P----LGIS 122 (386)
Q Consensus 55 ~L~~L~l~~~~~~~--~~---~~~~~~~L~~L~l~~~~~~~-~~~~~~~-~~l~~L~~L~l~~~~~~~~~-~----~~~~ 122 (386)
.++.+.+.++.+.. +. ....+++|+.|++++| .+. ..+..++ ..+++|++|++++| .+... + ..+.
T Consensus 65 ~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n-~l~~~~~~~~~~~~~~~L~~L~Ls~n-~i~~~~~~~~~~~~~ 142 (310)
T 4glp_A 65 RVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDL-KITGTMPPLPLEATGLALSSLRLRNV-SWATGRSWLAELQQW 142 (310)
T ss_dssp CCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESC-CCBSCCCCCSSSCCCBCCSSCEEESC-CCSSTTSSHHHHHTT
T ss_pred ceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCC-EeccchhhhhhhccCCCCCEEEeecc-cccchhhhhHHHHhh
Confidence 57889998887764 22 2245677999999999 555 4454422 88999999999999 66642 2 3345
Q ss_pred CCCccCEEEcCCCCCCccc-HhhhccCCCCEEEccCCccccc--cch-hhhcCCCCCcEEEEeccCCccccCCCcCcccc
Q 040192 123 KLISLQHLDLSNTGIAELP-KELNALVNLTCLNLEETWRLTV--IPR-RLISSFSSLHVLRIFGSGYSYSDGMIGNGEFE 198 (386)
Q Consensus 123 ~l~~L~~L~l~~~~i~~l~-~~~~~l~~L~~L~l~~~~~~~~--~~~-~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~L~ 198 (386)
.+++|++|++++|.+..++ ..++.+++|++|++++|+..+. ++. ..++.+++|++|++++|.++.....
T Consensus 143 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~------- 215 (310)
T 4glp_A 143 LKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGV------- 215 (310)
T ss_dssp BCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHH-------
T ss_pred hccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHH-------
Confidence 7899999999999998766 5678999999999999965432 322 2247889999999999987653100
Q ss_pred cccceeecCCccccccccccCCcEEEeeccCCccchhcccccccccCccccccCcccEEEecCCCCCCccccccCCCCCc
Q 040192 199 QLCGFRRSKSLDVSALADLKRLNRLKIAECYGLAELKMDYKSVVQNTGQSFVFHSLKKFQISYCKELKDLTFLIFAPNLK 278 (386)
Q Consensus 199 ~L~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~l~~l~~L~ 278 (386)
....+..+++|++|++++|+.....+..... .. .+++|++|++++| .++.++... +++|+
T Consensus 216 -----------~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~---~~----~~~~L~~L~Ls~N-~l~~lp~~~-~~~L~ 275 (310)
T 4glp_A 216 -----------CAALAAAGVQPHSLDLSHNSLRATVNPSAPR---CM----WSSALNSLNLSFA-GLEQVPKGL-PAKLR 275 (310)
T ss_dssp -----------HHHHHHHTCCCSSEECTTSCCCCCCCSCCSS---CC----CCTTCCCEECCSS-CCCSCCSCC-CSCCS
T ss_pred -----------HHHHHhcCCCCCEEECCCCCCCccchhhHHh---cc----CcCcCCEEECCCC-CCCchhhhh-cCCCC
Confidence 0012356789999999999766532222211 00 2479999999999 566665422 38999
Q ss_pred EEeecCCCccchhhccCcccccCCCCcccccceeeecccc
Q 040192 279 SIEVDSCYALEEIVSDVPEVMMGNLNPFAQFHFLCFSYLP 318 (386)
Q Consensus 279 ~L~l~~c~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 318 (386)
.|++++|. ++.++ ....+++|++|++++++
T Consensus 276 ~L~Ls~N~-l~~~~---------~~~~l~~L~~L~L~~N~ 305 (310)
T 4glp_A 276 VLDLSSNR-LNRAP---------QPDELPEVDNLTLDGNP 305 (310)
T ss_dssp CEECCSCC-CCSCC---------CTTSCCCCSCEECSSTT
T ss_pred EEECCCCc-CCCCc---------hhhhCCCccEEECcCCC
Confidence 99999955 77652 45678999999999984
No 99
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.66 E-value=3e-17 Score=161.81 Aligned_cols=62 Identities=10% Similarity=0.050 Sum_probs=35.0
Q ss_pred CCCCcEEeecCCCccchhhccCcccccCCCCcccccceeeecccccccccc--CCCcCCCCccEEeecCccc
Q 040192 274 APNLKSIEVDSCYALEEIVSDVPEVMMGNLNPFAQFHFLCFSYLPNLKSIY--RKPLPFPHLKEMKVIHCLK 343 (386)
Q Consensus 274 l~~L~~L~l~~c~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~--~~~~~~~~L~~L~i~~c~~ 343 (386)
+++|+.|+|++|. +++.... .....+++|++|+|++|+. .+.. .....+++|+.|++++|+.
T Consensus 455 ~~~L~~L~L~~~~-i~~~~~~------~l~~~~~~L~~L~L~~n~~-~~~~~~~~~~~l~~L~~L~l~~~~~ 518 (594)
T 2p1m_B 455 AKKMEMLSVAFAG-DSDLGMH------HVLSGCDSLRKLEIRDCPF-GDKALLANASKLETMRSLWMSSCSV 518 (594)
T ss_dssp CTTCCEEEEESCC-SSHHHHH------HHHHHCTTCCEEEEESCSC-CHHHHHHTGGGGGGSSEEEEESSCC
T ss_pred chhccEeeccCCC-CcHHHHH------HHHhcCCCcCEEECcCCCC-cHHHHHHHHHhCCCCCEEeeeCCCC
Confidence 5666666666654 3332221 1124567788888877754 3211 1233467888888887754
No 100
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.65 E-value=2.9e-15 Score=127.23 Aligned_cols=151 Identities=24% Similarity=0.383 Sum_probs=127.8
Q ss_pred ccEEEEcCCCCCCCCcccccccCccEEEecCCcccccCCC--CCCCCCcEEecccCcCCCcCChhhhcCCCcCceecccC
Q 040192 33 EEHLVYAGAGLSETPDVRKWEKNVRRLSLMENQIENLSEV--PTCPYLRTLFLNNNAPLRRIDSGFFQSMPRLNVLNLSG 110 (386)
Q Consensus 33 ~~~l~~~~~~l~~~p~~~~~~~~L~~L~l~~~~~~~~~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~ 110 (386)
...+.+.+.++..+|.. -.+ ++++|++++|.+..++.. ..+++|++|++++| .+..++...+..+++|++|++++
T Consensus 9 ~~~v~c~~~~l~~~p~~-~~~-~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~Ls~ 85 (208)
T 2o6s_A 9 GTTVECYSQGRTSVPTG-IPA-QTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGN-KLQSLPNGVFNKLTSLTYLNLST 85 (208)
T ss_dssp TTEEECCSSCCSSCCSC-CCT-TCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCEEEecCCCccCCCCC-CCC-CCcEEEcCCCccCcCChhhhcccccCcEEECCCC-ccCccChhhcCCCCCcCEEECCC
Confidence 45677888888888742 223 899999999999987664 78999999999999 88888887788999999999999
Q ss_pred Cccccccch-hhcCCCccCEEEcCCCCCCcccHh-hhccCCCCEEEccCCccccccchhhhcCCCCCcEEEEeccCCccc
Q 040192 111 AIRLYSFPL-GISKLISLQHLDLSNTGIAELPKE-LNALVNLTCLNLEETWRLTVIPRRLISSFSSLHVLRIFGSGYSYS 188 (386)
Q Consensus 111 ~~~~~~~~~-~~~~l~~L~~L~l~~~~i~~l~~~-~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~ 188 (386)
| .+..++. .+..+++|++|++++|.++.++.. +..+++|+.|++++| .+..++...+..+++|+.|++++|.+...
T Consensus 86 n-~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~l~~L~~L~l~~N~~~~~ 163 (208)
T 2o6s_A 86 N-QLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQN-QLKSVPDGVFDRLTSLQYIWLHDNPWDCT 163 (208)
T ss_dssp S-CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSCCBCCC
T ss_pred C-cCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCC-ccceeCHHHhccCCCccEEEecCCCeecC
Confidence 9 8887754 468999999999999999988754 688999999999999 55677776689999999999999976554
No 101
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.64 E-value=1.4e-15 Score=149.17 Aligned_cols=191 Identities=19% Similarity=0.242 Sum_probs=146.9
Q ss_pred CccEEEecCCcccccCCCCCCCCCcEEecccCcCCCcCChhhhcCCCcCceecccCCccccccchhhcCCCccCEEEcCC
Q 040192 55 NVRRLSLMENQIENLSEVPTCPYLRTLFLNNNAPLRRIDSGFFQSMPRLNVLNLSGAIRLYSFPLGISKLISLQHLDLSN 134 (386)
Q Consensus 55 ~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~ 134 (386)
++..+.+..+.+.++.....+++|+.|++++| .+..++. +..+++|+.|++++| .+..+++ +..+++|+.|++++
T Consensus 22 ~l~~l~l~~~~i~~~~~~~~L~~L~~L~l~~n-~i~~l~~--l~~l~~L~~L~Ls~N-~l~~~~~-l~~l~~L~~L~Ls~ 96 (605)
T 1m9s_A 22 ETIKDNLKKKSVTDAVTQNELNSIDQIIANNS-DIKSVQG--IQYLPNVTKLFLNGN-KLTDIKP-LTNLKNLGWLFLDE 96 (605)
T ss_dssp HHHHHHTTCSCTTSEECHHHHTTCCCCBCTTC-CCCCCTT--GGGCTTCCEEECTTS-CCCCCGG-GGGCTTCCEEECCS
T ss_pred HHHHHhccCCCcccccchhcCCCCCEEECcCC-CCCCChH--HccCCCCCEEEeeCC-CCCCChh-hccCCCCCEEECcC
Confidence 44555666666666555577888999999888 6777764 788999999999988 7777765 78889999999999
Q ss_pred CCCCcccHhhhccCCCCEEEccCCccccccchhhhcCCCCCcEEEEeccCCccccCCCcCcccccccceeecCCcccccc
Q 040192 135 TGIAELPKELNALVNLTCLNLEETWRLTVIPRRLISSFSSLHVLRIFGSGYSYSDGMIGNGEFEQLCGFRRSKSLDVSAL 214 (386)
Q Consensus 135 ~~i~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~L~~~~~~~~~~~~~l 214 (386)
|.+..++ .+..+++|+.|++++| .+..++. +..+++|+.|++++|.+... ..+
T Consensus 97 N~l~~l~-~l~~l~~L~~L~Ls~N-~l~~l~~--l~~l~~L~~L~Ls~N~l~~l-----------------------~~l 149 (605)
T 1m9s_A 97 NKIKDLS-SLKDLKKLKSLSLEHN-GISDING--LVHLPQLESLYLGNNKITDI-----------------------TVL 149 (605)
T ss_dssp SCCCCCT-TSTTCTTCCEEECTTS-CCCCCGG--GGGCTTCSEEECCSSCCCCC-----------------------GGG
T ss_pred CCCCCCh-hhccCCCCCEEEecCC-CCCCCcc--ccCCCccCEEECCCCccCCc-----------------------hhh
Confidence 9888876 5788899999999998 4556654 88889999999988876654 235
Q ss_pred ccccCCcEEEeeccCCccchhcccccccccCccccccCcccEEEecCCCCCCccccccCCCCCcEEeecCCCccchh
Q 040192 215 ADLKRLNRLKIAECYGLAELKMDYKSVVQNTGQSFVFHSLKKFQISYCKELKDLTFLIFAPNLKSIEVDSCYALEEI 291 (386)
Q Consensus 215 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~l~~l~~L~~L~l~~c~~~~~~ 291 (386)
..+++|+.|++++|.... ... +. .+++|+.|+|++| .+++++.+..+++|+.|+|++|+ +...
T Consensus 150 ~~l~~L~~L~Ls~N~l~~-~~~--l~---------~l~~L~~L~Ls~N-~i~~l~~l~~l~~L~~L~L~~N~-l~~~ 212 (605)
T 1m9s_A 150 SRLTKLDTLSLEDNQISD-IVP--LA---------GLTKLQNLYLSKN-HISDLRALAGLKNLDVLELFSQE-CLNK 212 (605)
T ss_dssp GSCTTCSEEECCSSCCCC-CGG--GT---------TCTTCCEEECCSS-CCCBCGGGTTCTTCSEEECCSEE-EECC
T ss_pred cccCCCCEEECcCCcCCC-chh--hc---------cCCCCCEEECcCC-CCCCChHHccCCCCCEEEccCCc-CcCC
Confidence 567888888888886554 222 33 6888999999888 57777778888899999998865 4443
No 102
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.64 E-value=3.4e-15 Score=128.78 Aligned_cols=151 Identities=27% Similarity=0.425 Sum_probs=131.4
Q ss_pred ccEEEEcCCCCCCCCcccccccCccEEEecCCcccccCCC--CCCCCCcEEecccCcCCCcCChhhhcCCCcCceecccC
Q 040192 33 EEHLVYAGAGLSETPDVRKWEKNVRRLSLMENQIENLSEV--PTCPYLRTLFLNNNAPLRRIDSGFFQSMPRLNVLNLSG 110 (386)
Q Consensus 33 ~~~l~~~~~~l~~~p~~~~~~~~L~~L~l~~~~~~~~~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~ 110 (386)
...+.+.+.++..+|.. .++++++|++++|.+..++.. ..+++|+.|++++| .+..++...+..+++|++|++++
T Consensus 21 ~~~v~c~~~~l~~ip~~--~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N-~l~~i~~~~~~~l~~L~~L~Ls~ 97 (229)
T 3e6j_A 21 GTTVDCRSKRHASVPAG--IPTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSN-QLGALPVGVFDSLTQLTVLDLGT 97 (229)
T ss_dssp TTEEECTTSCCSSCCSC--CCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCEeEccCCCcCccCCC--CCCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCC-CCCCcChhhcccCCCcCEEECCC
Confidence 34588888889888862 223899999999999996443 78999999999999 78888888789999999999999
Q ss_pred Cccccccch-hhcCCCccCEEEcCCCCCCcccHhhhccCCCCEEEccCCccccccchhhhcCCCCCcEEEEeccCCccc
Q 040192 111 AIRLYSFPL-GISKLISLQHLDLSNTGIAELPKELNALVNLTCLNLEETWRLTVIPRRLISSFSSLHVLRIFGSGYSYS 188 (386)
Q Consensus 111 ~~~~~~~~~-~~~~l~~L~~L~l~~~~i~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~ 188 (386)
| .+..++. .+..+++|++|++++|.++.+|..+..+++|+.|++++| .+..++...+..+++|+.|++.+|.+...
T Consensus 98 N-~l~~l~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N~~~c~ 174 (229)
T 3e6j_A 98 N-QLTVLPSAVFDRLVHLKELFMCCNKLTELPRGIERLTHLTHLALDQN-QLKSIPHGAFDRLSSLTHAYLFGNPWDCE 174 (229)
T ss_dssp S-CCCCCCTTTTTTCTTCCEEECCSSCCCSCCTTGGGCTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECTTSCBCTT
T ss_pred C-cCCccChhHhCcchhhCeEeccCCcccccCcccccCCCCCEEECCCC-cCCccCHHHHhCCCCCCEEEeeCCCccCC
Confidence 9 8888754 568999999999999999999999999999999999999 66777766689999999999999987654
No 103
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.63 E-value=3.6e-15 Score=125.52 Aligned_cols=148 Identities=18% Similarity=0.246 Sum_probs=126.7
Q ss_pred cccEEEEcCCCCCCCCcccccccCccEEEecCCcccccCCCCCCCCCcEEecccCcCCCc-CChhhhcCCCcCceecccC
Q 040192 32 KEEHLVYAGAGLSETPDVRKWEKNVRRLSLMENQIENLSEVPTCPYLRTLFLNNNAPLRR-IDSGFFQSMPRLNVLNLSG 110 (386)
Q Consensus 32 ~~~~l~~~~~~l~~~p~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~~l~~L~~L~l~~ 110 (386)
....+.+.+..+..+|.+..++ +|++|++++|.+..++....+++|++|++++| .+.. .+.. ++.+++|++|++++
T Consensus 45 ~L~~L~l~~n~i~~l~~l~~l~-~L~~L~l~~n~~~~~~~l~~l~~L~~L~l~~n-~l~~~~~~~-l~~l~~L~~L~Ls~ 121 (197)
T 4ezg_A 45 SLTYITLANINVTDLTGIEYAH-NIKDLTINNIHATNYNPISGLSNLERLRIMGK-DVTSDKIPN-LSGLTSLTLLDISH 121 (197)
T ss_dssp TCCEEEEESSCCSCCTTGGGCT-TCSEEEEESCCCSCCGGGTTCTTCCEEEEECT-TCBGGGSCC-CTTCTTCCEEECCS
T ss_pred CccEEeccCCCccChHHHhcCC-CCCEEEccCCCCCcchhhhcCCCCCEEEeECC-ccCcccChh-hcCCCCCCEEEecC
Confidence 4678999999999999899999 99999999998888887789999999999999 6664 3433 78999999999999
Q ss_pred Cccccc-cchhhcCCCccCEEEcCCCC-CCcccHhhhccCCCCEEEccCCccccccchhhhcCCCCCcEEEEeccCCcc
Q 040192 111 AIRLYS-FPLGISKLISLQHLDLSNTG-IAELPKELNALVNLTCLNLEETWRLTVIPRRLISSFSSLHVLRIFGSGYSY 187 (386)
Q Consensus 111 ~~~~~~-~~~~~~~l~~L~~L~l~~~~-i~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~ 187 (386)
| .+.. .+..++.+++|++|++++|. ++.++ .+..+++|+.|++++| .+..++. +..+++|++|++++|.+..
T Consensus 122 n-~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n-~i~~~~~--l~~l~~L~~L~l~~N~i~~ 195 (197)
T 4ezg_A 122 S-AHDDSILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFD-GVHDYRG--IEDFPKLNQLYAFSQTIGG 195 (197)
T ss_dssp S-BCBGGGHHHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECTTB-CCCCCTT--GGGCSSCCEEEECBC----
T ss_pred C-ccCcHhHHHHhhCCCCCEEEccCCCCccccH-hhcCCCCCCEEECCCC-CCcChHH--hccCCCCCEEEeeCcccCC
Confidence 9 7774 57788999999999999998 88887 6889999999999999 5666763 8999999999999998754
No 104
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.63 E-value=2.7e-15 Score=132.23 Aligned_cols=163 Identities=20% Similarity=0.295 Sum_probs=134.3
Q ss_pred EEEcCCCCCCCCcccccccCccEEEecCCcccccCCCCCCCCCcEEecccCcCCCcCChhhhcCCCcCceecccCCcccc
Q 040192 36 LVYAGAGLSETPDVRKWEKNVRRLSLMENQIENLSEVPTCPYLRTLFLNNNAPLRRIDSGFFQSMPRLNVLNLSGAIRLY 115 (386)
Q Consensus 36 l~~~~~~l~~~p~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~ 115 (386)
+.+.+..+.+++.+..++ ++++|++++|.+..++....+++|+.|++++| .+..+++ +..+++|++|++++| .+.
T Consensus 24 l~l~~~~i~~~~~~~~l~-~L~~L~l~~n~i~~l~~l~~l~~L~~L~L~~N-~i~~~~~--l~~l~~L~~L~L~~N-~l~ 98 (263)
T 1xeu_A 24 QNLGKQSVTDLVSQKELS-GVQNFNGDNSNIQSLAGMQFFTNLKELHLSHN-QISDLSP--LKDLTKLEELSVNRN-RLK 98 (263)
T ss_dssp HHHTCSCTTSEECHHHHT-TCSEEECTTSCCCCCTTGGGCTTCCEEECCSS-CCCCCGG--GTTCSSCCEEECCSS-CCS
T ss_pred HHhcCCCcccccchhhcC-cCcEEECcCCCcccchHHhhCCCCCEEECCCC-ccCCChh--hccCCCCCEEECCCC-ccC
Confidence 335566777777788888 99999999999999887788999999999999 7887776 789999999999999 888
Q ss_pred ccchhhcCCCccCEEEcCCCCCCcccHhhhccCCCCEEEccCCccccccchhhhcCCCCCcEEEEeccCCccccCCCcCc
Q 040192 116 SFPLGISKLISLQHLDLSNTGIAELPKELNALVNLTCLNLEETWRLTVIPRRLISSFSSLHVLRIFGSGYSYSDGMIGNG 195 (386)
Q Consensus 116 ~~~~~~~~l~~L~~L~l~~~~i~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~ 195 (386)
.++.... ++|+.|++++|.++.++ .+..+++|+.|++++| .+..++. +..+++|+.|++++|.+.+.
T Consensus 99 ~l~~~~~--~~L~~L~L~~N~l~~~~-~l~~l~~L~~L~Ls~N-~i~~~~~--l~~l~~L~~L~L~~N~i~~~------- 165 (263)
T 1xeu_A 99 NLNGIPS--ACLSRLFLDNNELRDTD-SLIHLKNLEILSIRNN-KLKSIVM--LGFLSKLEVLDLHGNEITNT------- 165 (263)
T ss_dssp CCTTCCC--SSCCEEECCSSCCSBSG-GGTTCTTCCEEECTTS-CCCBCGG--GGGCTTCCEEECTTSCCCBC-------
T ss_pred CcCcccc--CcccEEEccCCccCCCh-hhcCcccccEEECCCC-cCCCChH--HccCCCCCEEECCCCcCcch-------
Confidence 7765333 89999999999999875 5888999999999999 5666764 88999999999999987765
Q ss_pred ccccccceeecCCccccccccccCCcEEEeeccCCcc
Q 040192 196 EFEQLCGFRRSKSLDVSALADLKRLNRLKIAECYGLA 232 (386)
Q Consensus 196 ~L~~L~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~ 232 (386)
..+..+++|+.|++++|+...
T Consensus 166 ----------------~~l~~l~~L~~L~l~~N~~~~ 186 (263)
T 1xeu_A 166 ----------------GGLTRLKKVNWIDLTGQKCVN 186 (263)
T ss_dssp ----------------TTSTTCCCCCEEEEEEEEEEC
T ss_pred ----------------HHhccCCCCCEEeCCCCcccC
Confidence 224557788999998886543
No 105
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.61 E-value=8.7e-17 Score=158.47 Aligned_cols=306 Identities=14% Similarity=0.138 Sum_probs=181.1
Q ss_pred CCeeechhHHHhhh-ccccccccEEEEcCC-CCCC--CCccc-ccccCccEEEecCCcccc-----cCCC-CCCCCCcEE
Q 040192 13 WKCTKEAMLPRMSS-DIEEEKEEHLVYAGA-GLSE--TPDVR-KWEKNVRRLSLMENQIEN-----LSEV-PTCPYLRTL 81 (386)
Q Consensus 13 ~~~~~~d~~~~~~~-~~~~~~~~~l~~~~~-~l~~--~p~~~-~~~~~L~~L~l~~~~~~~-----~~~~-~~~~~L~~L 81 (386)
..|.+.|....... .+. ....+.+.+. .+.. ++.+. .++ +|++|++++|.+.+ ++.. ..+++|++|
T Consensus 113 ~~~~~~~~~~~~l~~~~~--~L~~L~L~~~~~~~~~~l~~~~~~~~-~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L 189 (594)
T 2p1m_B 113 KRMVVTDDCLELIAKSFK--NFKVLVLSSCEGFSTDGLAAIAATCR-NLKELDLRESDVDDVSGHWLSHFPDTYTSLVSL 189 (594)
T ss_dssp ESCBCCHHHHHHHHHHCT--TCCEEEEESCEEEEHHHHHHHHHHCT-TCCEEECTTCEEECCCGGGGGGSCTTCCCCCEE
T ss_pred eCcEEcHHHHHHHHHhCC--CCcEEeCCCcCCCCHHHHHHHHHhCC-CCCEEeCcCCccCCcchHHHHHHhhcCCcCcEE
Confidence 44556665544322 333 4677777654 3322 33433 566 99999999998765 2333 578899999
Q ss_pred ecccCcCCCcCC----hhhhcCCCcCceecccCCccccccchhhcCCCccCEEEcCCCC---------------------
Q 040192 82 FLNNNAPLRRID----SGFFQSMPRLNVLNLSGAIRLYSFPLGISKLISLQHLDLSNTG--------------------- 136 (386)
Q Consensus 82 ~l~~~~~~~~~~----~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~--------------------- 136 (386)
++++|. ..+. ..+...+++|++|++.+|..+..++..+..+++|+.|+++.+.
T Consensus 190 ~l~~~~--~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~l~~~~~L 267 (594)
T 2p1m_B 190 NISCLA--SEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKEL 267 (594)
T ss_dssp ECTTCC--SCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSBCCCCCCHHHHHHHHHHHHTCTTC
T ss_pred EecccC--CcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHHHhcCCcceEcccccccCccchhhHHHHHHHHhcCCCc
Confidence 999883 2232 2224567999999998875555566666677777777654331
Q ss_pred ----------CCcccHhhhccCCCCEEEccCCccccccchhhhcCCCCCcEEEEeccCCccc--c-CCCcCcccccccc-
Q 040192 137 ----------IAELPKELNALVNLTCLNLEETWRLTVIPRRLISSFSSLHVLRIFGSGYSYS--D-GMIGNGEFEQLCG- 202 (386)
Q Consensus 137 ----------i~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~--~-~~~~l~~L~~L~~- 202 (386)
...++..+..+++|+.|++++|.........++..+++|++|++.+| +... . ....+++|+.|.-
T Consensus 268 ~~Ls~~~~~~~~~l~~~~~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~~L~~L~L~ 346 (594)
T 2p1m_B 268 RCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCKDLRELRVF 346 (594)
T ss_dssp CEEECCBTCCGGGGGGGHHHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCTTCCEEEEE
T ss_pred ccccCCcccchhhHHHHHHhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCCCCCEEEEe
Confidence 11344444578899999999885222222333568889999999887 3322 1 1113455655531
Q ss_pred ---------eeecCCccccccc-cccCCcEEEeeccCCccchhcccccccccCccccccCcccEEEec-----CCCCCCc
Q 040192 203 ---------FRRSKSLDVSALA-DLKRLNRLKIAECYGLAELKMDYKSVVQNTGQSFVFHSLKKFQIS-----YCKELKD 267 (386)
Q Consensus 203 ---------~~~~~~~~~~~l~-~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~-----~~~~l~~ 267 (386)
+....+.....+. .+++|++|.+.++.... .....+.. .+++|+.|+++ +|..+++
T Consensus 347 ~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~~l~~-~~~~~l~~--------~~~~L~~L~L~~~~~~~~~~l~~ 417 (594)
T 2p1m_B 347 PSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTN-AALITIAR--------NRPNMTRFRLCIIEPKAPDYLTL 417 (594)
T ss_dssp CSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEEESCCCH-HHHHHHHH--------HCTTCCEEEEEESSTTCCCTTTC
T ss_pred cCcccccccCCCCCHHHHHHHHHhchhHHHHHHhcCCcCH-HHHHHHHh--------hCCCcceeEeecccCCCcccccC
Confidence 1112221222232 37788888665554433 33333321 47888888888 4556664
Q ss_pred cc-------cccCCCCCcEEeecCCCccchhhccCcccccCCCC-cccccceeeecccccccccc-CC-CcCCCCccEEe
Q 040192 268 LT-------FLIFAPNLKSIEVDSCYALEEIVSDVPEVMMGNLN-PFAQFHFLCFSYLPNLKSIY-RK-PLPFPHLKEMK 337 (386)
Q Consensus 268 ~~-------~l~~l~~L~~L~l~~c~~~~~~~~~~~~~~~~~~~-~~~~L~~L~l~~~~~l~~~~-~~-~~~~~~L~~L~ 337 (386)
.+ .+..+++|+.|++++ .+++.... .+. .+++|++|++++|. +.+.. .. ...+++|+.|+
T Consensus 418 ~~~~~~~~~l~~~~~~L~~L~L~~--~l~~~~~~-------~l~~~~~~L~~L~L~~~~-i~~~~~~~l~~~~~~L~~L~ 487 (594)
T 2p1m_B 418 EPLDIGFGAIVEHCKDLRRLSLSG--LLTDKVFE-------YIGTYAKKMEMLSVAFAG-DSDLGMHHVLSGCDSLRKLE 487 (594)
T ss_dssp CCTHHHHHHHHHHCTTCCEEECCS--SCCHHHHH-------HHHHHCTTCCEEEEESCC-SSHHHHHHHHHHCTTCCEEE
T ss_pred CchhhHHHHHHhhCCCccEEeecC--cccHHHHH-------HHHHhchhccEeeccCCC-CcHHHHHHHHhcCCCcCEEE
Confidence 32 145678888888866 34443331 222 36788888888884 43211 11 13478888888
Q ss_pred ecCccc
Q 040192 338 VIHCLK 343 (386)
Q Consensus 338 i~~c~~ 343 (386)
+++|+-
T Consensus 488 L~~n~~ 493 (594)
T 2p1m_B 488 IRDCPF 493 (594)
T ss_dssp EESCSC
T ss_pred CcCCCC
Confidence 888763
No 106
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.60 E-value=9.1e-15 Score=125.26 Aligned_cols=151 Identities=25% Similarity=0.365 Sum_probs=128.9
Q ss_pred ccEEEEcCCCCCCCCcccccccCccEEEecCCcccccCCC--CCCCCCcEEecccCcCCCcCChhhhcCCCcCceecccC
Q 040192 33 EEHLVYAGAGLSETPDVRKWEKNVRRLSLMENQIENLSEV--PTCPYLRTLFLNNNAPLRRIDSGFFQSMPRLNVLNLSG 110 (386)
Q Consensus 33 ~~~l~~~~~~l~~~p~~~~~~~~L~~L~l~~~~~~~~~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~ 110 (386)
...+.+.+.++..+|.. +++++++|++++|.+..++.. ..+++|+.|++++| .+..+.+..+..+++|++|++++
T Consensus 13 ~~~v~c~~~~l~~iP~~--l~~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N-~i~~~~~~~~~~l~~L~~L~Ls~ 89 (220)
T 2v9t_B 13 NNIVDCRGKGLTEIPTN--LPETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNN-QISELAPDAFQGLRSLNSLVLYG 89 (220)
T ss_dssp TTEEECTTSCCSSCCSS--CCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSS-CCCEECTTTTTTCSSCCEEECCS
T ss_pred CCEEEcCCCCcCcCCCc--cCcCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCC-cCCCcCHHHhhCCcCCCEEECCC
Confidence 45788999999999862 223899999999999997753 88999999999999 78877666689999999999999
Q ss_pred Cccccccch-hhcCCCccCEEEcCCCCCCccc-HhhhccCCCCEEEccCCccccccchhhhcCCCCCcEEEEeccCCccc
Q 040192 111 AIRLYSFPL-GISKLISLQHLDLSNTGIAELP-KELNALVNLTCLNLEETWRLTVIPRRLISSFSSLHVLRIFGSGYSYS 188 (386)
Q Consensus 111 ~~~~~~~~~-~~~~l~~L~~L~l~~~~i~~l~-~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~ 188 (386)
| .+..+|. .+..+++|++|++++|.++.++ ..+..+++|+.|++++| .+..++...+..+++|+.|++++|.+.-.
T Consensus 90 N-~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N~~~c~ 167 (220)
T 2v9t_B 90 N-KITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDN-KLQTIAKGTFSPLRAIQTMHLAQNPFICD 167 (220)
T ss_dssp S-CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSSCEECS
T ss_pred C-cCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCC-cCCEECHHHHhCCCCCCEEEeCCCCcCCC
Confidence 9 8888865 4688999999999999999774 57889999999999999 56677766689999999999999977654
No 107
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.60 E-value=1.6e-15 Score=133.71 Aligned_cols=123 Identities=16% Similarity=0.229 Sum_probs=75.9
Q ss_pred CccEEEecCCcccccCCCCCCCCCcEEecccCcCCCcCChhhhcCCCcCceecccCCccccccchhhcCCCccCEEEcCC
Q 040192 55 NVRRLSLMENQIENLSEVPTCPYLRTLFLNNNAPLRRIDSGFFQSMPRLNVLNLSGAIRLYSFPLGISKLISLQHLDLSN 134 (386)
Q Consensus 55 ~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~ 134 (386)
+++.+.+.++.+.+++....+++|+.|++++| .+..++. +..+++|++|++++| .+..++. +..+++|++|++++
T Consensus 20 ~l~~l~l~~~~i~~~~~~~~l~~L~~L~l~~n-~i~~l~~--l~~l~~L~~L~L~~N-~i~~~~~-l~~l~~L~~L~L~~ 94 (263)
T 1xeu_A 20 NAVKQNLGKQSVTDLVSQKELSGVQNFNGDNS-NIQSLAG--MQFFTNLKELHLSHN-QISDLSP-LKDLTKLEELSVNR 94 (263)
T ss_dssp HHHHHHHTCSCTTSEECHHHHTTCSEEECTTS-CCCCCTT--GGGCTTCCEEECCSS-CCCCCGG-GTTCSSCCEEECCS
T ss_pred HHHHHHhcCCCcccccchhhcCcCcEEECcCC-CcccchH--HhhCCCCCEEECCCC-ccCCChh-hccCCCCCEEECCC
Confidence 45566666666666655566777777777776 5665552 566677777777766 6666554 66666777777777
Q ss_pred CCCCcccHhhhccCCCCEEEccCCccccccchhhhcCCCCCcEEEEeccCCcc
Q 040192 135 TGIAELPKELNALVNLTCLNLEETWRLTVIPRRLISSFSSLHVLRIFGSGYSY 187 (386)
Q Consensus 135 ~~i~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~ 187 (386)
|.++.+|.... ++|+.|++++| .+..++. +..+++|+.|++++|.+.+
T Consensus 95 N~l~~l~~~~~--~~L~~L~L~~N-~l~~~~~--l~~l~~L~~L~Ls~N~i~~ 142 (263)
T 1xeu_A 95 NRLKNLNGIPS--ACLSRLFLDNN-ELRDTDS--LIHLKNLEILSIRNNKLKS 142 (263)
T ss_dssp SCCSCCTTCCC--SSCCEEECCSS-CCSBSGG--GTTCTTCCEEECTTSCCCB
T ss_pred CccCCcCcccc--CcccEEEccCC-ccCCChh--hcCcccccEEECCCCcCCC
Confidence 66666553222 66666666666 3444443 5566666666666655444
No 108
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.60 E-value=8.9e-15 Score=124.18 Aligned_cols=165 Identities=21% Similarity=0.284 Sum_probs=114.8
Q ss_pred cEEEecCCcccccCCCCCCCCCcEEecccCcCCCcCChhhhcCCCcCceecccCCccccccch-hhcCCCccCEEEcCCC
Q 040192 57 RRLSLMENQIENLSEVPTCPYLRTLFLNNNAPLRRIDSGFFQSMPRLNVLNLSGAIRLYSFPL-GISKLISLQHLDLSNT 135 (386)
Q Consensus 57 ~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~-~~~~l~~L~~L~l~~~ 135 (386)
+.++.+++.+..+|.. ..++|+.|++++| .+..++...++.+++|++|++++| .+..++. .+..+++|++|++++|
T Consensus 10 ~~v~c~~~~l~~~p~~-~~~~l~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~Ls~n 86 (208)
T 2o6s_A 10 TTVECYSQGRTSVPTG-IPAQTTYLDLETN-SLKSLPNGVFDELTSLTQLYLGGN-KLQSLPNGVFNKLTSLTYLNLSTN 86 (208)
T ss_dssp TEEECCSSCCSSCCSC-CCTTCSEEECCSS-CCCCCCTTTTTTCTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEecCCCccCCCCC-CCCCCcEEEcCCC-ccCcCChhhhcccccCcEEECCCC-ccCccChhhcCCCCCcCEEECCCC
Confidence 4666777777766543 3458888888888 677777766778888888888888 7776654 4577888888888888
Q ss_pred CCCcccHh-hhccCCCCEEEccCCccccccchhhhcCCCCCcEEEEeccCCccccCCCcCcccccccceeecCCcccccc
Q 040192 136 GIAELPKE-LNALVNLTCLNLEETWRLTVIPRRLISSFSSLHVLRIFGSGYSYSDGMIGNGEFEQLCGFRRSKSLDVSAL 214 (386)
Q Consensus 136 ~i~~l~~~-~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~L~~~~~~~~~~~~~l 214 (386)
.++.++.. +..+++|+.|++++| .+..++...+..+++|++|++++|.+.... ...+
T Consensus 87 ~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~---------------------~~~~ 144 (208)
T 2o6s_A 87 QLQSLPNGVFDKLTQLKELALNTN-QLQSLPDGVFDKLTQLKDLRLYQNQLKSVP---------------------DGVF 144 (208)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCSCCC---------------------TTTT
T ss_pred cCCccCHhHhcCccCCCEEEcCCC-cCcccCHhHhccCCcCCEEECCCCccceeC---------------------HHHh
Confidence 88877643 567888888888888 455666555677888888888887666541 1224
Q ss_pred ccccCCcEEEeeccCCccchhcccccccccCccccccCcccEEEecCCC
Q 040192 215 ADLKRLNRLKIAECYGLAELKMDYKSVVQNTGQSFVFHSLKKFQISYCK 263 (386)
Q Consensus 215 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 263 (386)
..+++|+.|++++|.... .+++|+.|.++.|.
T Consensus 145 ~~l~~L~~L~l~~N~~~~-----------------~~~~l~~L~~~~n~ 176 (208)
T 2o6s_A 145 DRLTSLQYIWLHDNPWDC-----------------TCPGIRYLSEWINK 176 (208)
T ss_dssp TTCTTCCEEECCSCCBCC-----------------CTTTTHHHHHHHHH
T ss_pred ccCCCccEEEecCCCeec-----------------CCCCHHHHHHHHHh
Confidence 456677777777763221 45666666666664
No 109
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.59 E-value=1.8e-14 Score=123.45 Aligned_cols=151 Identities=21% Similarity=0.319 Sum_probs=127.9
Q ss_pred ccEEEEcCCCCCCCCcccccccCccEEEecCCcccccCC---CCCCCCCcEEecccCcCCCcCChhhhcCCCcCceeccc
Q 040192 33 EEHLVYAGAGLSETPDVRKWEKNVRRLSLMENQIENLSE---VPTCPYLRTLFLNNNAPLRRIDSGFFQSMPRLNVLNLS 109 (386)
Q Consensus 33 ~~~l~~~~~~l~~~p~~~~~~~~L~~L~l~~~~~~~~~~---~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~ 109 (386)
...+.+.+..+.++|. .++..+++|++++|.+..++. ...+++|+.|++++| .+..+++..+..+++|++|+++
T Consensus 13 ~~~l~~s~n~l~~iP~--~~~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N-~i~~i~~~~~~~l~~L~~L~Ls 89 (220)
T 2v70_A 13 GTTVDCSNQKLNKIPE--HIPQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNN-KITDIEEGAFEGASGVNEILLT 89 (220)
T ss_dssp TTEEECCSSCCSSCCS--CCCTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECC
T ss_pred CCEeEeCCCCcccCcc--CCCCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCC-cCCEECHHHhCCCCCCCEEECC
Confidence 3478899999999986 223378999999999999743 378999999999999 7888887668999999999999
Q ss_pred CCccccccc-hhhcCCCccCEEEcCCCCCCcc-cHhhhccCCCCEEEccCCccccccchhhhcCCCCCcEEEEeccCCcc
Q 040192 110 GAIRLYSFP-LGISKLISLQHLDLSNTGIAEL-PKELNALVNLTCLNLEETWRLTVIPRRLISSFSSLHVLRIFGSGYSY 187 (386)
Q Consensus 110 ~~~~~~~~~-~~~~~l~~L~~L~l~~~~i~~l-~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~ 187 (386)
+| .+..++ ..+..+++|++|++++|.++.+ |..+..+++|+.|++++| .+..++...+..+++|+.|++++|.+..
T Consensus 90 ~N-~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N~l~c 167 (220)
T 2v70_A 90 SN-RLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDN-QITTVAPGAFDTLHSLSTLNLLANPFNC 167 (220)
T ss_dssp SS-CCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTS-CCCCBCTTTTTTCTTCCEEECCSCCEEC
T ss_pred CC-ccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCC-cCCEECHHHhcCCCCCCEEEecCcCCcC
Confidence 99 888774 5688999999999999999977 567889999999999999 5556644458999999999999998775
Q ss_pred c
Q 040192 188 S 188 (386)
Q Consensus 188 ~ 188 (386)
.
T Consensus 168 ~ 168 (220)
T 2v70_A 168 N 168 (220)
T ss_dssp S
T ss_pred C
Confidence 4
No 110
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.58 E-value=1.1e-14 Score=134.53 Aligned_cols=151 Identities=25% Similarity=0.338 Sum_probs=128.7
Q ss_pred ccEEEEcCCCCCCCCcccccccCccEEEecCCcccccCCC--C-CCCCCcEEecccCcCCCcCChhhhcCCCcCceeccc
Q 040192 33 EEHLVYAGAGLSETPDVRKWEKNVRRLSLMENQIENLSEV--P-TCPYLRTLFLNNNAPLRRIDSGFFQSMPRLNVLNLS 109 (386)
Q Consensus 33 ~~~l~~~~~~l~~~p~~~~~~~~L~~L~l~~~~~~~~~~~--~-~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~ 109 (386)
...+.+.+.++..+|. .++..++.|++++|.+..++.. . .+++|+.|++++| .+..+++..+..+++|++|+++
T Consensus 20 ~~~l~c~~~~l~~iP~--~~~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N-~i~~i~~~~~~~l~~L~~L~Ls 96 (361)
T 2xot_A 20 SNILSCSKQQLPNVPQ--SLPSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHN-HLNFISSEAFVPVPNLRYLDLS 96 (361)
T ss_dssp TTEEECCSSCCSSCCS--SCCTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECC
T ss_pred CCEEEeCCCCcCccCc--cCCCCCCEEECCCCCCCccChhhhhhcccccCEEECCCC-cCCccChhhccCCCCCCEEECC
Confidence 3578999999999986 2333799999999999997665 4 8999999999999 8888887778999999999999
Q ss_pred CCccccccc-hhhcCCCccCEEEcCCCCCCcc-cHhhhccCCCCEEEccCCccccccchhhh---cCCCCCcEEEEeccC
Q 040192 110 GAIRLYSFP-LGISKLISLQHLDLSNTGIAEL-PKELNALVNLTCLNLEETWRLTVIPRRLI---SSFSSLHVLRIFGSG 184 (386)
Q Consensus 110 ~~~~~~~~~-~~~~~l~~L~~L~l~~~~i~~l-~~~~~~l~~L~~L~l~~~~~~~~~~~~~l---~~l~~L~~L~l~~~~ 184 (386)
+| .+..++ ..+..+++|++|++++|.++.+ +..+..+++|+.|++++| .+..+|..++ ..+++|+.|++++|.
T Consensus 97 ~N-~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N-~l~~l~~~~~~~~~~l~~L~~L~L~~N~ 174 (361)
T 2xot_A 97 SN-HLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQN-QISRFPVELIKDGNKLPKLMLLDLSSNK 174 (361)
T ss_dssp SS-CCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS-CCCSCCGGGTC----CTTCCEEECCSSC
T ss_pred CC-cCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCC-cCCeeCHHHhcCcccCCcCCEEECCCCC
Confidence 99 888775 4688999999999999999977 467889999999999999 6677887655 679999999999998
Q ss_pred Cccc
Q 040192 185 YSYS 188 (386)
Q Consensus 185 ~~~~ 188 (386)
+...
T Consensus 175 l~~l 178 (361)
T 2xot_A 175 LKKL 178 (361)
T ss_dssp CCCC
T ss_pred CCcc
Confidence 8765
No 111
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.57 E-value=2.4e-14 Score=122.65 Aligned_cols=154 Identities=18% Similarity=0.297 Sum_probs=119.8
Q ss_pred ccEEEecCCcccccCCCCCCCCCcEEecccCcCCCcCChhhhcCCCcCceecccCCcccccc-chhhcCCCccCEEEcCC
Q 040192 56 VRRLSLMENQIENLSEVPTCPYLRTLFLNNNAPLRRIDSGFFQSMPRLNVLNLSGAIRLYSF-PLGISKLISLQHLDLSN 134 (386)
Q Consensus 56 L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~-~~~~~~l~~L~~L~l~~ 134 (386)
-+.++.+++.+..+|... .++|+.|++++| .+..+++..+..+++|++|++++| .+..+ |..+..+++|++|++++
T Consensus 13 ~~~v~c~~~~l~~iP~~l-~~~l~~L~l~~n-~i~~i~~~~~~~l~~L~~L~Ls~N-~i~~~~~~~~~~l~~L~~L~Ls~ 89 (220)
T 2v9t_B 13 NNIVDCRGKGLTEIPTNL-PETITEIRLEQN-TIKVIPPGAFSPYKKLRRIDLSNN-QISELAPDAFQGLRSLNSLVLYG 89 (220)
T ss_dssp TTEEECTTSCCSSCCSSC-CTTCCEEECCSS-CCCEECTTSSTTCTTCCEEECCSS-CCCEECTTTTTTCSSCCEEECCS
T ss_pred CCEEEcCCCCcCcCCCcc-CcCCCEEECCCC-cCCCcCHhHhhCCCCCCEEECCCC-cCCCcCHHHhhCCcCCCEEECCC
Confidence 356788888888877642 278999999998 788777766888999999999998 77766 67888899999999999
Q ss_pred CCCCcccHh-hhccCCCCEEEccCCccccccchhhhcCCCCCcEEEEeccCCccccCCCcCcccccccceeecCCccccc
Q 040192 135 TGIAELPKE-LNALVNLTCLNLEETWRLTVIPRRLISSFSSLHVLRIFGSGYSYSDGMIGNGEFEQLCGFRRSKSLDVSA 213 (386)
Q Consensus 135 ~~i~~l~~~-~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~L~~~~~~~~~~~~~ 213 (386)
|.++.+|.. +..+++|+.|++++| .+..++...+..+++|+.|++++|.+.... ...
T Consensus 90 N~l~~l~~~~f~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~---------------------~~~ 147 (220)
T 2v9t_B 90 NKITELPKSLFEGLFSLQLLLLNAN-KINCLRVDAFQDLHNLNLLSLYDNKLQTIA---------------------KGT 147 (220)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCSCCC---------------------TTT
T ss_pred CcCCccCHhHccCCCCCCEEECCCC-CCCEeCHHHcCCCCCCCEEECCCCcCCEEC---------------------HHH
Confidence 999888754 577899999999999 555665545888899999999988777651 223
Q ss_pred cccccCCcEEEeeccCCccch
Q 040192 214 LADLKRLNRLKIAECYGLAEL 234 (386)
Q Consensus 214 l~~~~~L~~L~l~~~~~~~~~ 234 (386)
+..+++|+.|++++|...-+.
T Consensus 148 ~~~l~~L~~L~L~~N~~~c~c 168 (220)
T 2v9t_B 148 FSPLRAIQTMHLAQNPFICDC 168 (220)
T ss_dssp TTTCTTCCEEECCSSCEECSG
T ss_pred HhCCCCCCEEEeCCCCcCCCC
Confidence 555678888888887654433
No 112
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.57 E-value=6e-14 Score=136.20 Aligned_cols=181 Identities=20% Similarity=0.261 Sum_probs=102.6
Q ss_pred CccEEEecCCcccccCCCCCCCCCcEEecccCcCCCcCChhhhcCCCcCceecccCCccccccchhhcCCCccCEEEcCC
Q 040192 55 NVRRLSLMENQIENLSEVPTCPYLRTLFLNNNAPLRRIDSGFFQSMPRLNVLNLSGAIRLYSFPLGISKLISLQHLDLSN 134 (386)
Q Consensus 55 ~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~ 134 (386)
+++.|++++|.+.++|... +++|+.|++++| .+..+| ..+++|++|++++| .+..+|. +.. +|++|++++
T Consensus 60 ~L~~L~Ls~n~L~~lp~~l-~~~L~~L~Ls~N-~l~~ip----~~l~~L~~L~Ls~N-~l~~ip~-l~~--~L~~L~Ls~ 129 (571)
T 3cvr_A 60 QFSELQLNRLNLSSLPDNL-PPQITVLEITQN-ALISLP----ELPASLEYLDACDN-RLSTLPE-LPA--SLKHLDVDN 129 (571)
T ss_dssp TCSEEECCSSCCSCCCSCC-CTTCSEEECCSS-CCSCCC----CCCTTCCEEECCSS-CCSCCCC-CCT--TCCEEECCS
T ss_pred CccEEEeCCCCCCccCHhH-cCCCCEEECcCC-CCcccc----cccCCCCEEEccCC-CCCCcch-hhc--CCCEEECCC
Confidence 4666666666666655432 356666776666 555555 23566666776666 6665655 433 666777777
Q ss_pred CCCCcccHhhhccCCCCEEEccCCccccccchhhhcCCCCCcEEEEeccCCccccCCCcCcccccccceeecCCcccccc
Q 040192 135 TGIAELPKELNALVNLTCLNLEETWRLTVIPRRLISSFSSLHVLRIFGSGYSYSDGMIGNGEFEQLCGFRRSKSLDVSAL 214 (386)
Q Consensus 135 ~~i~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~L~~~~~~~~~~~~~l 214 (386)
|.++.+|. .+++|+.|++++| .+..+|. .+++|+.|++++|.+... +. +
T Consensus 130 N~l~~lp~---~l~~L~~L~Ls~N-~l~~lp~----~l~~L~~L~Ls~N~L~~l----------------------p~-l 178 (571)
T 3cvr_A 130 NQLTMLPE---LPALLEYINADNN-QLTMLPE----LPTSLEVLSVRNNQLTFL----------------------PE-L 178 (571)
T ss_dssp SCCSCCCC---CCTTCCEEECCSS-CCSCCCC----CCTTCCEEECCSSCCSCC----------------------CC-C
T ss_pred CcCCCCCC---cCccccEEeCCCC-ccCcCCC----cCCCcCEEECCCCCCCCc----------------------ch-h
Confidence 66666665 4566777777666 3344543 356666777666655543 11 2
Q ss_pred ccccCCcEEEeeccCCccchhcccccccccCccccccCcccEEEecCCCCCCcccc-ccCCCCCcEEeecCCC
Q 040192 215 ADLKRLNRLKIAECYGLAELKMDYKSVVQNTGQSFVFHSLKKFQISYCKELKDLTF-LIFAPNLKSIEVDSCY 286 (386)
Q Consensus 215 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~-l~~l~~L~~L~l~~c~ 286 (386)
. ++|+.|++++|+.. .++. +.. .+.+..+.|+.|++++| .++.++. +..+++|+.|+|++|+
T Consensus 179 ~--~~L~~L~Ls~N~L~-~lp~--~~~----~L~~~~~~L~~L~Ls~N-~l~~lp~~l~~l~~L~~L~L~~N~ 241 (571)
T 3cvr_A 179 P--ESLEALDVSTNLLE-SLPA--VPV----RNHHSEETEIFFRCREN-RITHIPENILSLDPTCTIILEDNP 241 (571)
T ss_dssp C--TTCCEEECCSSCCS-SCCC--CC------------CCEEEECCSS-CCCCCCGGGGGSCTTEEEECCSSS
T ss_pred h--CCCCEEECcCCCCC-chhh--HHH----hhhcccccceEEecCCC-cceecCHHHhcCCCCCEEEeeCCc
Confidence 2 56667777666443 2322 210 00001222377777777 4555543 5557777777777755
No 113
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.55 E-value=4.2e-14 Score=121.07 Aligned_cols=155 Identities=17% Similarity=0.280 Sum_probs=113.4
Q ss_pred ccEEEecCCcccccCCCCCCCCCcEEecccCcCCCcC-ChhhhcCCCcCceecccCCccccccc-hhhcCCCccCEEEcC
Q 040192 56 VRRLSLMENQIENLSEVPTCPYLRTLFLNNNAPLRRI-DSGFFQSMPRLNVLNLSGAIRLYSFP-LGISKLISLQHLDLS 133 (386)
Q Consensus 56 L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~~~~~l~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~ 133 (386)
-++++++++.+..+|.. -.+.++.|++++| .+..+ +...+..+++|++|++++| .+..++ ..+..+++|++|+++
T Consensus 13 ~~~l~~s~n~l~~iP~~-~~~~~~~L~L~~N-~l~~~~~~~~~~~l~~L~~L~L~~N-~i~~i~~~~~~~l~~L~~L~Ls 89 (220)
T 2v70_A 13 GTTVDCSNQKLNKIPEH-IPQYTAELRLNNN-EFTVLEATGIFKKLPQLRKINFSNN-KITDIEEGAFEGASGVNEILLT 89 (220)
T ss_dssp TTEEECCSSCCSSCCSC-CCTTCSEEECCSS-CCCEECCCCCGGGCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECC
T ss_pred CCEeEeCCCCcccCccC-CCCCCCEEEcCCC-cCCccCchhhhccCCCCCEEECCCC-cCCEECHHHhCCCCCCCEEECC
Confidence 45788888888887653 2446788888888 66665 3455778888899988888 777664 467888888888888
Q ss_pred CCCCCcccH-hhhccCCCCEEEccCCccccccchhhhcCCCCCcEEEEeccCCccccCCCcCcccccccceeecCCcccc
Q 040192 134 NTGIAELPK-ELNALVNLTCLNLEETWRLTVIPRRLISSFSSLHVLRIFGSGYSYSDGMIGNGEFEQLCGFRRSKSLDVS 212 (386)
Q Consensus 134 ~~~i~~l~~-~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~L~~~~~~~~~~~~ 212 (386)
+|.++.++. .+..+++|+.|++++| .+..++...+..+++|+.|++++|.+... .+.
T Consensus 90 ~N~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~L~~N~l~~~---------------------~~~ 147 (220)
T 2v70_A 90 SNRLENVQHKMFKGLESLKTLMLRSN-RITCVGNDSFIGLSSVRLLSLYDNQITTV---------------------APG 147 (220)
T ss_dssp SSCCCCCCGGGGTTCSSCCEEECTTS-CCCCBCTTSSTTCTTCSEEECTTSCCCCB---------------------CTT
T ss_pred CCccCccCHhHhcCCcCCCEEECCCC-cCCeECHhHcCCCccCCEEECCCCcCCEE---------------------CHH
Confidence 888887764 4778888888888888 44555444478888888888888877664 123
Q ss_pred ccccccCCcEEEeeccCCccchh
Q 040192 213 ALADLKRLNRLKIAECYGLAELK 235 (386)
Q Consensus 213 ~l~~~~~L~~L~l~~~~~~~~~~ 235 (386)
.+..+++|+.|++++|...-+..
T Consensus 148 ~~~~l~~L~~L~L~~N~l~c~c~ 170 (220)
T 2v70_A 148 AFDTLHSLSTLNLLANPFNCNCY 170 (220)
T ss_dssp TTTTCTTCCEEECCSCCEECSGG
T ss_pred HhcCCCCCCEEEecCcCCcCCCc
Confidence 45566778888888776554333
No 114
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.54 E-value=1.4e-13 Score=133.69 Aligned_cols=188 Identities=16% Similarity=0.126 Sum_probs=146.0
Q ss_pred cccccccEEEEcCCCCCCCCcccccccCccEEEecCCcccccCCCCCCCCCcEEecccCcCCCcCChhhhcCCCcCceec
Q 040192 28 IEEEKEEHLVYAGAGLSETPDVRKWEKNVRRLSLMENQIENLSEVPTCPYLRTLFLNNNAPLRRIDSGFFQSMPRLNVLN 107 (386)
Q Consensus 28 ~~~~~~~~l~~~~~~l~~~p~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~ 107 (386)
|.......+.+.+..+.++|.-. .+ +|+.|++++|.+..+| ..+++|+.|++++| .+..+|. +.. +|++|+
T Consensus 56 C~~~~L~~L~Ls~n~L~~lp~~l-~~-~L~~L~Ls~N~l~~ip--~~l~~L~~L~Ls~N-~l~~ip~--l~~--~L~~L~ 126 (571)
T 3cvr_A 56 CLINQFSELQLNRLNLSSLPDNL-PP-QITVLEITQNALISLP--ELPASLEYLDACDN-RLSTLPE--LPA--SLKHLD 126 (571)
T ss_dssp HHHTTCSEEECCSSCCSCCCSCC-CT-TCSEEECCSSCCSCCC--CCCTTCCEEECCSS-CCSCCCC--CCT--TCCEEE
T ss_pred cccCCccEEEeCCCCCCccCHhH-cC-CCCEEECcCCCCcccc--cccCCCCEEEccCC-CCCCcch--hhc--CCCEEE
Confidence 44335788999999999988622 35 8999999999999988 67899999999999 7777877 444 999999
Q ss_pred ccCCccccccchhhcCCCccCEEEcCCCCCCcccHhhhccCCCCEEEccCCccccccchhhhcCCCCCcEEEEeccCCcc
Q 040192 108 LSGAIRLYSFPLGISKLISLQHLDLSNTGIAELPKELNALVNLTCLNLEETWRLTVIPRRLISSFSSLHVLRIFGSGYSY 187 (386)
Q Consensus 108 l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~ 187 (386)
+++| .++.+|. .+++|++|++++|.++.+|. .+++|+.|++++| .+..+|. +. ++|+.|++++|.++.
T Consensus 127 Ls~N-~l~~lp~---~l~~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~N-~L~~lp~--l~--~~L~~L~Ls~N~L~~ 194 (571)
T 3cvr_A 127 VDNN-QLTMLPE---LPALLEYINADNNQLTMLPE---LPTSLEVLSVRNN-QLTFLPE--LP--ESLEALDVSTNLLES 194 (571)
T ss_dssp CCSS-CCSCCCC---CCTTCCEEECCSSCCSCCCC---CCTTCCEEECCSS-CCSCCCC--CC--TTCCEEECCSSCCSS
T ss_pred CCCC-cCCCCCC---cCccccEEeCCCCccCcCCC---cCCCcCEEECCCC-CCCCcch--hh--CCCCEEECcCCCCCc
Confidence 9999 8888876 68999999999999999886 5789999999999 5566877 44 899999999998886
Q ss_pred ccCCCcCcccccccceeecCCccccccccccCCcEEEeeccCCccchhcccccccccCccccccCcccEEEecCCCCCC
Q 040192 188 SDGMIGNGEFEQLCGFRRSKSLDVSALADLKRLNRLKIAECYGLAELKMDYKSVVQNTGQSFVFHSLKKFQISYCKELK 266 (386)
Q Consensus 188 ~~~~~~l~~L~~L~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~ 266 (386)
... ...+| ....+.|+.|++++|+... ++.... .+++|+.|++++|+ ++
T Consensus 195 lp~--~~~~L----------------~~~~~~L~~L~Ls~N~l~~-lp~~l~----------~l~~L~~L~L~~N~-l~ 243 (571)
T 3cvr_A 195 LPA--VPVRN----------------HHSEETEIFFRCRENRITH-IPENIL----------SLDPTCTIILEDNP-LS 243 (571)
T ss_dssp CCC--CC------------------------CCEEEECCSSCCCC-CCGGGG----------GSCTTEEEECCSSS-CC
T ss_pred hhh--HHHhh----------------hcccccceEEecCCCccee-cCHHHh----------cCCCCCEEEeeCCc-CC
Confidence 521 10011 1122345999999987653 443332 68999999999995 44
No 115
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.53 E-value=1.6e-13 Score=118.21 Aligned_cols=151 Identities=21% Similarity=0.268 Sum_probs=126.0
Q ss_pred CccEEEecCCcccccCCCCCCCCCcEEecccCcCCCcCChhhhcCCCcCceecccCCccccccc-hhhcCCCccCEEEcC
Q 040192 55 NVRRLSLMENQIENLSEVPTCPYLRTLFLNNNAPLRRIDSGFFQSMPRLNVLNLSGAIRLYSFP-LGISKLISLQHLDLS 133 (386)
Q Consensus 55 ~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~ 133 (386)
.-+.++.+++.+..+|.. -.++|+.|++++| .+..+++..+..+++|++|++++| .+..++ ..+..+++|++|+++
T Consensus 20 s~~~v~c~~~~l~~ip~~-~~~~L~~L~Ls~n-~i~~~~~~~~~~l~~L~~L~L~~N-~l~~i~~~~~~~l~~L~~L~Ls 96 (229)
T 3e6j_A 20 SGTTVDCRSKRHASVPAG-IPTNAQILYLHDN-QITKLEPGVFDSLINLKELYLGSN-QLGALPVGVFDSLTQLTVLDLG 96 (229)
T ss_dssp ETTEEECTTSCCSSCCSC-CCTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECC
T ss_pred eCCEeEccCCCcCccCCC-CCCCCCEEEcCCC-ccCccCHHHhhCccCCcEEECCCC-CCCCcChhhcccCCCcCEEECC
Confidence 567889999998888764 3489999999999 787776666899999999999999 888886 456899999999999
Q ss_pred CCCCCcccHh-hhccCCCCEEEccCCccccccchhhhcCCCCCcEEEEeccCCccccCCCcCcccccccceeecCCcccc
Q 040192 134 NTGIAELPKE-LNALVNLTCLNLEETWRLTVIPRRLISSFSSLHVLRIFGSGYSYSDGMIGNGEFEQLCGFRRSKSLDVS 212 (386)
Q Consensus 134 ~~~i~~l~~~-~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~L~~~~~~~~~~~~ 212 (386)
+|.++.++.. +..+++|+.|++++| .+..+|.. +..+++|+.|++++|.+.... ..
T Consensus 97 ~N~l~~l~~~~~~~l~~L~~L~Ls~N-~l~~lp~~-~~~l~~L~~L~L~~N~l~~~~---------------------~~ 153 (229)
T 3e6j_A 97 TNQLTVLPSAVFDRLVHLKELFMCCN-KLTELPRG-IERLTHLTHLALDQNQLKSIP---------------------HG 153 (229)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSS-CCCSCCTT-GGGCTTCSEEECCSSCCCCCC---------------------TT
T ss_pred CCcCCccChhHhCcchhhCeEeccCC-cccccCcc-cccCCCCCEEECCCCcCCccC---------------------HH
Confidence 9999988754 678999999999999 56688876 799999999999999887651 13
Q ss_pred ccccccCCcEEEeeccCCc
Q 040192 213 ALADLKRLNRLKIAECYGL 231 (386)
Q Consensus 213 ~l~~~~~L~~L~l~~~~~~ 231 (386)
.+..+++|+.|++.+|...
T Consensus 154 ~~~~l~~L~~L~l~~N~~~ 172 (229)
T 3e6j_A 154 AFDRLSSLTHAYLFGNPWD 172 (229)
T ss_dssp TTTTCTTCCEEECTTSCBC
T ss_pred HHhCCCCCCEEEeeCCCcc
Confidence 3556788999999888654
No 116
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.52 E-value=7.9e-14 Score=128.70 Aligned_cols=176 Identities=19% Similarity=0.174 Sum_probs=128.6
Q ss_pred ccEEEecCCcccccCCCCCCCCCcEEecccCcCCCcCChhhhc-CCCcCceecccCCccccccc-hhhcCCCccCEEEcC
Q 040192 56 VRRLSLMENQIENLSEVPTCPYLRTLFLNNNAPLRRIDSGFFQ-SMPRLNVLNLSGAIRLYSFP-LGISKLISLQHLDLS 133 (386)
Q Consensus 56 L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~-~l~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~ 133 (386)
-+.++++++.+..+|.. -.+.++.|++++| .+..++...+. .+++|++|++++| .+..++ ..+..+++|++|+++
T Consensus 20 ~~~l~c~~~~l~~iP~~-~~~~l~~L~Ls~N-~l~~l~~~~~~~~l~~L~~L~L~~N-~i~~i~~~~~~~l~~L~~L~Ls 96 (361)
T 2xot_A 20 SNILSCSKQQLPNVPQS-LPSYTALLDLSHN-NLSRLRAEWTPTRLTNLHSLLLSHN-HLNFISSEAFVPVPNLRYLDLS 96 (361)
T ss_dssp TTEEECCSSCCSSCCSS-CCTTCSEEECCSS-CCCEECTTSSSSCCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECC
T ss_pred CCEEEeCCCCcCccCcc-CCCCCCEEECCCC-CCCccChhhhhhcccccCEEECCCC-cCCccChhhccCCCCCCEEECC
Confidence 36788888888887764 3356889999999 78877776666 8999999999998 888775 568889999999999
Q ss_pred CCCCCcccH-hhhccCCCCEEEccCCccccccchhhhcCCCCCcEEEEeccCCccccCCCcCcccccccceeecCCcccc
Q 040192 134 NTGIAELPK-ELNALVNLTCLNLEETWRLTVIPRRLISSFSSLHVLRIFGSGYSYSDGMIGNGEFEQLCGFRRSKSLDVS 212 (386)
Q Consensus 134 ~~~i~~l~~-~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~L~~~~~~~~~~~~ 212 (386)
+|.++.++. .+..+++|+.|++++| .+..++...+..+++|+.|++++|.+...... ...
T Consensus 97 ~N~l~~~~~~~~~~l~~L~~L~L~~N-~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~------------------~~~ 157 (361)
T 2xot_A 97 SNHLHTLDEFLFSDLQALEVLLLYNN-HIVVVDRNAFEDMAQLQKLYLSQNQISRFPVE------------------LIK 157 (361)
T ss_dssp SSCCCEECTTTTTTCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSSCCCSCCGG------------------GTC
T ss_pred CCcCCcCCHHHhCCCcCCCEEECCCC-cccEECHHHhCCcccCCEEECCCCcCCeeCHH------------------Hhc
Confidence 999987764 5778899999999999 45566554588899999999999877765110 001
Q ss_pred ccccccCCcEEEeeccCCccchhcccccccccCccccccCc--ccEEEecCCC
Q 040192 213 ALADLKRLNRLKIAECYGLAELKMDYKSVVQNTGQSFVFHS--LKKFQISYCK 263 (386)
Q Consensus 213 ~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--L~~L~l~~~~ 263 (386)
.+..+++|+.|++++|+... ++...+. .++. ++.|++.+|+
T Consensus 158 ~~~~l~~L~~L~L~~N~l~~-l~~~~~~---------~l~~~~l~~l~l~~N~ 200 (361)
T 2xot_A 158 DGNKLPKLMLLDLSSNKLKK-LPLTDLQ---------KLPAWVKNGLYLHNNP 200 (361)
T ss_dssp ----CTTCCEEECCSSCCCC-CCHHHHH---------HSCHHHHTTEECCSSC
T ss_pred CcccCCcCCEEECCCCCCCc-cCHHHhh---------hccHhhcceEEecCCC
Confidence 12456788888888876543 4433333 4454 4778888775
No 117
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.49 E-value=1e-13 Score=113.38 Aligned_cols=129 Identities=24% Similarity=0.318 Sum_probs=110.1
Q ss_pred CccEEEecCCccc--ccCCC-CCCCCCcEEecccCcCCCcCChhhhcCCCcCceecccCCccccc-cchhhcCCCccCEE
Q 040192 55 NVRRLSLMENQIE--NLSEV-PTCPYLRTLFLNNNAPLRRIDSGFFQSMPRLNVLNLSGAIRLYS-FPLGISKLISLQHL 130 (386)
Q Consensus 55 ~L~~L~l~~~~~~--~~~~~-~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~-~~~~~~~l~~L~~L 130 (386)
++++|++++|.+. .+|.. ..+++|+.|++++| .+..+ . .+..+++|++|++++| .+.. +|..+..+++|++|
T Consensus 25 ~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n-~l~~~-~-~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L 100 (168)
T 2ell_A 25 AVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINV-GLISV-S-NLPKLPKLKKLELSEN-RIFGGLDMLAEKLPNLTHL 100 (168)
T ss_dssp SCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESS-CCCCC-S-SCCCCSSCCEEEEESC-CCCSCCCHHHHHCTTCCEE
T ss_pred cCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCC-CCCCh-h-hhccCCCCCEEECcCC-cCchHHHHHHhhCCCCCEE
Confidence 8999999999998 68777 88999999999999 67776 3 3789999999999999 7776 67777789999999
Q ss_pred EcCCCCCCccc--HhhhccCCCCEEEccCCccccccch---hhhcCCCCCcEEEEeccCCccc
Q 040192 131 DLSNTGIAELP--KELNALVNLTCLNLEETWRLTVIPR---RLISSFSSLHVLRIFGSGYSYS 188 (386)
Q Consensus 131 ~l~~~~i~~l~--~~~~~l~~L~~L~l~~~~~~~~~~~---~~l~~l~~L~~L~l~~~~~~~~ 188 (386)
++++|.++.++ ..+..+++|+.|++++| .+..++. ..+..+++|+.|++++|...+.
T Consensus 101 ~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N-~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~ 162 (168)
T 2ell_A 101 NLSGNKLKDISTLEPLKKLECLKSLDLFNC-EVTNLNDYRESVFKLLPQLTYLDGYDREDQEA 162 (168)
T ss_dssp ECBSSSCCSSGGGGGGSSCSCCCEEECCSS-GGGTSTTHHHHHHTTCSSCCEETTEETTSCBC
T ss_pred eccCCccCcchhHHHHhcCCCCCEEEeeCC-cCcchHHHHHHHHHhCccCcEecCCCCChhhc
Confidence 99999999876 67889999999999999 4556555 3588999999999999877665
No 118
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.47 E-value=1.6e-13 Score=109.84 Aligned_cols=122 Identities=25% Similarity=0.313 Sum_probs=102.6
Q ss_pred CccEEEecCCccc--ccCCC-CCCCCCcEEecccCcCCCcCChhhhcCCCcCceecccCCccccc-cchhhcCCCccCEE
Q 040192 55 NVRRLSLMENQIE--NLSEV-PTCPYLRTLFLNNNAPLRRIDSGFFQSMPRLNVLNLSGAIRLYS-FPLGISKLISLQHL 130 (386)
Q Consensus 55 ~L~~L~l~~~~~~--~~~~~-~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~-~~~~~~~l~~L~~L 130 (386)
++++|++++|.+. .+|.. ..+++|+.|++++| .+..+ ..++.+++|++|++++| .+.. +|..+..+++|++|
T Consensus 18 ~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n-~l~~~--~~~~~l~~L~~L~Ls~n-~i~~~~~~~~~~l~~L~~L 93 (149)
T 2je0_A 18 DVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINV-GLTSI--ANLPKLNKLKKLELSDN-RVSGGLEVLAEKCPNLTHL 93 (149)
T ss_dssp GCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTS-CCCCC--TTCCCCTTCCEEECCSS-CCCSCTHHHHHHCTTCCEE
T ss_pred cCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCC-CCCCc--hhhhcCCCCCEEECCCC-cccchHHHHhhhCCCCCEE
Confidence 7999999999998 57766 88999999999999 77766 33788999999999999 7776 67777789999999
Q ss_pred EcCCCCCCccc--HhhhccCCCCEEEccCCccccccch---hhhcCCCCCcEEEEe
Q 040192 131 DLSNTGIAELP--KELNALVNLTCLNLEETWRLTVIPR---RLISSFSSLHVLRIF 181 (386)
Q Consensus 131 ~l~~~~i~~l~--~~~~~l~~L~~L~l~~~~~~~~~~~---~~l~~l~~L~~L~l~ 181 (386)
++++|.++.++ ..++.+++|+.|++++| .+..++. ..+..+++|+.|+++
T Consensus 94 ~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 94 NLSGNKIKDLSTIEPLKKLENLKSLDLFNC-EVTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp ECTTSCCCSHHHHGGGGGCTTCCEEECTTC-GGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred ECCCCcCCChHHHHHHhhCCCCCEEeCcCC-cccchHHHHHHHHHHCCCcccccCC
Confidence 99999998765 67889999999999999 4555554 458889999998765
No 119
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.46 E-value=1.3e-13 Score=113.72 Aligned_cols=136 Identities=22% Similarity=0.264 Sum_probs=109.6
Q ss_pred CcccccccCccEEEecCCcccccCCCCCCC-CCcEEecccCcCCCcCChhhhcCCCcCceecccCCccccccchh-hcCC
Q 040192 47 PDVRKWEKNVRRLSLMENQIENLSEVPTCP-YLRTLFLNNNAPLRRIDSGFFQSMPRLNVLNLSGAIRLYSFPLG-ISKL 124 (386)
Q Consensus 47 p~~~~~~~~L~~L~l~~~~~~~~~~~~~~~-~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~-~~~l 124 (386)
+.+.... ++++|++++|.+..++....+. +|+.|++++| .+..++ . +..+++|++|++++| .+..+|+. +..+
T Consensus 13 ~~~~~~~-~L~~L~l~~n~l~~i~~~~~~~~~L~~L~Ls~N-~l~~~~-~-l~~l~~L~~L~Ls~N-~l~~~~~~~~~~l 87 (176)
T 1a9n_A 13 AQYTNAV-RDRELDLRGYKIPVIENLGATLDQFDAIDFSDN-EIRKLD-G-FPLLRRLKTLLVNNN-RICRIGEGLDQAL 87 (176)
T ss_dssp CEEECTT-SCEEEECTTSCCCSCCCGGGGTTCCSEEECCSS-CCCEEC-C-CCCCSSCCEEECCSS-CCCEECSCHHHHC
T ss_pred HhcCCcC-CceEEEeeCCCCchhHHhhhcCCCCCEEECCCC-CCCccc-c-cccCCCCCEEECCCC-cccccCcchhhcC
Confidence 3444555 8999999999999887765544 9999999999 777663 3 788999999999999 88877654 4889
Q ss_pred CccCEEEcCCCCCCcccH--hhhccCCCCEEEccCCccccccchh---hhcCCCCCcEEEEeccCCccc
Q 040192 125 ISLQHLDLSNTGIAELPK--ELNALVNLTCLNLEETWRLTVIPRR---LISSFSSLHVLRIFGSGYSYS 188 (386)
Q Consensus 125 ~~L~~L~l~~~~i~~l~~--~~~~l~~L~~L~l~~~~~~~~~~~~---~l~~l~~L~~L~l~~~~~~~~ 188 (386)
++|++|++++|.++.+|. .+..+++|+.|++++|+ +..+|.. ++..+++|+.|+++++...+.
T Consensus 88 ~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N~-i~~~~~~~~~~~~~l~~L~~Ld~~~n~~~~~ 155 (176)
T 1a9n_A 88 PDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNP-VTNKKHYRLYVIYKVPQVRVLDFQKVKLKER 155 (176)
T ss_dssp TTCCEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSG-GGGSTTHHHHHHHHCTTCSEETTEECCHHHH
T ss_pred CCCCEEECCCCcCCcchhhHhhhcCCCCCEEEecCCC-CCCcHhHHHHHHHHCCccceeCCCcCCHHHH
Confidence 999999999999988886 78889999999999994 4566653 478899999999988866544
No 120
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.44 E-value=4.1e-15 Score=144.90 Aligned_cols=104 Identities=17% Similarity=0.172 Sum_probs=55.3
Q ss_pred CCCEEEccCCccccccchhhhcCCCCCcEEEEeccCCccccCCCcCcccccccceeecCCccccccccccCCcEEEeecc
Q 040192 149 NLTCLNLEETWRLTVIPRRLISSFSSLHVLRIFGSGYSYSDGMIGNGEFEQLCGFRRSKSLDVSALADLKRLNRLKIAEC 228 (386)
Q Consensus 149 ~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~L~~~~~~~~~~~~~l~~~~~L~~L~l~~~ 228 (386)
.|+.|++++| .+..+|. ++.+++|+.|++++|.+... +..+..+++|+.|++++|
T Consensus 442 ~L~~L~Ls~n-~l~~lp~--~~~l~~L~~L~Ls~N~l~~l----------------------p~~~~~l~~L~~L~Ls~N 496 (567)
T 1dce_A 442 DVRVLHLAHK-DLTVLCH--LEQLLLVTHLDLSHNRLRAL----------------------PPALAALRCLEVLQASDN 496 (567)
T ss_dssp TCSEEECTTS-CCSSCCC--GGGGTTCCEEECCSSCCCCC----------------------CGGGGGCTTCCEEECCSS
T ss_pred CceEEEecCC-CCCCCcC--ccccccCcEeecCccccccc----------------------chhhhcCCCCCEEECCCC
Confidence 3556666665 3444553 55566666666666555432 233445556666666665
Q ss_pred CCccchhcccccccccCccccccCcccEEEecCCCCCCcc---ccccCCCCCcEEeecCCCccchh
Q 040192 229 YGLAELKMDYKSVVQNTGQSFVFHSLKKFQISYCKELKDL---TFLIFAPNLKSIEVDSCYALEEI 291 (386)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~---~~l~~l~~L~~L~l~~c~~~~~~ 291 (386)
+... ++ .+. .+++|+.|++++| .++.+ ..++.+++|+.|+|++|+ ++..
T Consensus 497 ~l~~-lp--~l~---------~l~~L~~L~Ls~N-~l~~~~~p~~l~~l~~L~~L~L~~N~-l~~~ 548 (567)
T 1dce_A 497 ALEN-VD--GVA---------NLPRLQELLLCNN-RLQQSAAIQPLVSCPRLVLLNLQGNS-LCQE 548 (567)
T ss_dssp CCCC-CG--GGT---------TCSSCCEEECCSS-CCCSSSTTGGGGGCTTCCEEECTTSG-GGGS
T ss_pred CCCC-Cc--ccC---------CCCCCcEEECCCC-CCCCCCCcHHHhcCCCCCEEEecCCc-CCCC
Confidence 4433 22 222 5666666666666 34433 235566666666666643 4444
No 121
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.42 E-value=6.8e-13 Score=109.38 Aligned_cols=127 Identities=20% Similarity=0.294 Sum_probs=112.9
Q ss_pred cccEEEEcCCCCCCCCcccccccCccEEEecCCcccccCCCCCCCCCcEEecccCcCCCcCChhhhcCCCcCceecccCC
Q 040192 32 KEEHLVYAGAGLSETPDVRKWEKNVRRLSLMENQIENLSEVPTCPYLRTLFLNNNAPLRRIDSGFFQSMPRLNVLNLSGA 111 (386)
Q Consensus 32 ~~~~l~~~~~~l~~~p~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~ 111 (386)
....+.+.+..+..+|.+..+.++++.|++++|.+.+++....+++|+.|++++| .+..+++..+..+++|++|++++|
T Consensus 20 ~L~~L~l~~n~l~~i~~~~~~~~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~L~~N 98 (176)
T 1a9n_A 20 RDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKLDGFPLLRRLKTLLVNNN-RICRIGEGLDQALPDLTELILTNN 98 (176)
T ss_dssp SCEEEECTTSCCCSCCCGGGGTTCCSEEECCSSCCCEECCCCCCSSCCEEECCSS-CCCEECSCHHHHCTTCCEEECCSC
T ss_pred CceEEEeeCCCCchhHHhhhcCCCCCEEECCCCCCCcccccccCCCCCEEECCCC-cccccCcchhhcCCCCCEEECCCC
Confidence 4678889999999998877765589999999999999876799999999999999 888888776789999999999999
Q ss_pred ccccccch--hhcCCCccCEEEcCCCCCCcccHh----hhccCCCCEEEccCCcc
Q 040192 112 IRLYSFPL--GISKLISLQHLDLSNTGIAELPKE----LNALVNLTCLNLEETWR 160 (386)
Q Consensus 112 ~~~~~~~~--~~~~l~~L~~L~l~~~~i~~l~~~----~~~l~~L~~L~l~~~~~ 160 (386)
.++.+|. .+..+++|++|++++|.++.+|.. +..+++|+.|+++.|..
T Consensus 99 -~i~~~~~~~~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n~~ 152 (176)
T 1a9n_A 99 -SLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKVKL 152 (176)
T ss_dssp -CCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTEECCH
T ss_pred -cCCcchhhHhhhcCCCCCEEEecCCCCCCcHhHHHHHHHHCCccceeCCCcCCH
Confidence 8888876 788999999999999999988874 88999999999999843
No 122
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.40 E-value=1.6e-12 Score=106.18 Aligned_cols=131 Identities=26% Similarity=0.321 Sum_probs=112.0
Q ss_pred cccEEEEcCCCCC--CCCcc-cccccCccEEEecCCcccccCCCCCCCCCcEEecccCcCCCcCChhhhcCCCcCceecc
Q 040192 32 KEEHLVYAGAGLS--ETPDV-RKWEKNVRRLSLMENQIENLSEVPTCPYLRTLFLNNNAPLRRIDSGFFQSMPRLNVLNL 108 (386)
Q Consensus 32 ~~~~l~~~~~~l~--~~p~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l 108 (386)
....+.+.+..+. .+|.. ..++ +|+.|++++|.+..++....+++|+.|++++| .+....+..+..+++|++|++
T Consensus 25 ~L~~L~l~~n~l~~~~i~~~~~~l~-~L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~L 102 (168)
T 2ell_A 25 AVRELVLDNCKSNDGKIEGLTAEFV-NLEFLSLINVGLISVSNLPKLPKLKKLELSEN-RIFGGLDMLAEKLPNLTHLNL 102 (168)
T ss_dssp SCSEEECCSCBCBTTBCSSCCGGGG-GCCEEEEESSCCCCCSSCCCCSSCCEEEEESC-CCCSCCCHHHHHCTTCCEEEC
T ss_pred cCCEEECCCCCCChhhHHHHHHhCC-CCCEEeCcCCCCCChhhhccCCCCCEEECcCC-cCchHHHHHHhhCCCCCEEec
Confidence 5788999998887 77764 7788 99999999999998855689999999999999 676644454778999999999
Q ss_pred cCCccccccc--hhhcCCCccCEEEcCCCCCCcccH----hhhccCCCCEEEccCCccccccch
Q 040192 109 SGAIRLYSFP--LGISKLISLQHLDLSNTGIAELPK----ELNALVNLTCLNLEETWRLTVIPR 166 (386)
Q Consensus 109 ~~~~~~~~~~--~~~~~l~~L~~L~l~~~~i~~l~~----~~~~l~~L~~L~l~~~~~~~~~~~ 166 (386)
++| .+..++ ..+..+++|++|++++|.++.+|. .+..+++|+.|++++| ....+|.
T Consensus 103 s~N-~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n-~~~~~~~ 164 (168)
T 2ell_A 103 SGN-KLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDR-EDQEAPD 164 (168)
T ss_dssp BSS-SCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEET-TSCBCCS
T ss_pred cCC-ccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCC-Chhhccc
Confidence 999 888875 688999999999999999998876 7889999999999999 4455554
No 123
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.39 E-value=1.1e-12 Score=104.89 Aligned_cols=111 Identities=22% Similarity=0.275 Sum_probs=94.3
Q ss_pred CCCCCCcEEecccCcCCC--cCChhhhcCCCcCceecccCCccccccchhhcCCCccCEEEcCCCCCCc-ccHhhhccCC
Q 040192 73 PTCPYLRTLFLNNNAPLR--RIDSGFFQSMPRLNVLNLSGAIRLYSFPLGISKLISLQHLDLSNTGIAE-LPKELNALVN 149 (386)
Q Consensus 73 ~~~~~L~~L~l~~~~~~~--~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~-l~~~~~~l~~ 149 (386)
...++|+.|++++| .+. .++.. +..+++|++|++++| .+..+ ..++.+++|++|++++|.++. +|..+..+++
T Consensus 14 ~~~~~l~~L~l~~n-~l~~~~~~~~-~~~l~~L~~L~l~~n-~l~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~ 89 (149)
T 2je0_A 14 RTPSDVKELVLDNS-RSNEGKLEGL-TDEFEELEFLSTINV-GLTSI-ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPN 89 (149)
T ss_dssp CCGGGCSEEECTTC-BCBTTBCCSC-CTTCTTCCEEECTTS-CCCCC-TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTT
T ss_pred CCCccCeEEEccCC-cCChhHHHHH-HhhcCCCcEEECcCC-CCCCc-hhhhcCCCCCEEECCCCcccchHHHHhhhCCC
Confidence 45689999999999 665 66664 789999999999999 88877 678899999999999999997 7777778999
Q ss_pred CCEEEccCCccccccc-hhhhcCCCCCcEEEEeccCCccc
Q 040192 150 LTCLNLEETWRLTVIP-RRLISSFSSLHVLRIFGSGYSYS 188 (386)
Q Consensus 150 L~~L~l~~~~~~~~~~-~~~l~~l~~L~~L~l~~~~~~~~ 188 (386)
|+.|++++|. +..++ ...+..+++|++|++++|.+...
T Consensus 90 L~~L~ls~N~-i~~~~~~~~~~~l~~L~~L~l~~N~l~~~ 128 (149)
T 2je0_A 90 LTHLNLSGNK-IKDLSTIEPLKKLENLKSLDLFNCEVTNL 128 (149)
T ss_dssp CCEEECTTSC-CCSHHHHGGGGGCTTCCEEECTTCGGGGS
T ss_pred CCEEECCCCc-CCChHHHHHHhhCCCCCEEeCcCCcccch
Confidence 9999999994 55554 13489999999999999988765
No 124
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.38 E-value=3.8e-12 Score=106.44 Aligned_cols=121 Identities=26% Similarity=0.326 Sum_probs=65.2
Q ss_pred cEEEEcCCCCCCCCcccccccCccEEEecCCcccccCCC-CCCCCCcEEecccCcCCCcCChhhhcCCCcCceecccCCc
Q 040192 34 EHLVYAGAGLSETPDVRKWEKNVRRLSLMENQIENLSEV-PTCPYLRTLFLNNNAPLRRIDSGFFQSMPRLNVLNLSGAI 112 (386)
Q Consensus 34 ~~l~~~~~~l~~~p~~~~~~~~L~~L~l~~~~~~~~~~~-~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~ 112 (386)
..+.+.+.++..+|.. +++++++|++++|.+..+|.. ..+++|+.|++++| .+..+++..|..+++|++|++++|
T Consensus 13 ~~l~~~~~~l~~ip~~--~~~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N-~i~~i~~~~f~~l~~L~~L~Ls~N- 88 (193)
T 2wfh_A 13 TVVRCSNKGLKVLPKG--IPRDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNN-RISTLSNQSFSNMTQLLTLILSYN- 88 (193)
T ss_dssp TEEECTTSCCSSCCSC--CCTTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS-
T ss_pred CEEEcCCCCCCcCCCC--CCCCCCEEECCCCcCchhHHHhhcccCCCEEECCCC-cCCEeCHhHccCCCCCCEEECCCC-
Confidence 4566666666666641 122566666666666655433 55556666666655 455555444555555555555555
Q ss_pred cccccc-hhhcCCCccCEEEcCCCCCCcccH-hhhccCCCCEEEccCC
Q 040192 113 RLYSFP-LGISKLISLQHLDLSNTGIAELPK-ELNALVNLTCLNLEET 158 (386)
Q Consensus 113 ~~~~~~-~~~~~l~~L~~L~l~~~~i~~l~~-~~~~l~~L~~L~l~~~ 158 (386)
.+..++ ..+..+++|++|++++|.++.+|. .+..+++|+.|++++|
T Consensus 89 ~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N 136 (193)
T 2wfh_A 89 RLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGAN 136 (193)
T ss_dssp CCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSS
T ss_pred ccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCC
Confidence 455442 345555555555555555555443 2444555555555554
No 125
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.38 E-value=5.6e-12 Score=103.92 Aligned_cols=126 Identities=21% Similarity=0.355 Sum_probs=68.0
Q ss_pred EEEecCCcccccCCCCCCCCCcEEecccCcCCCcCChhhhcCCCcCceecccCCccccccch-hhcCCCccCEEEcCCCC
Q 040192 58 RLSLMENQIENLSEVPTCPYLRTLFLNNNAPLRRIDSGFFQSMPRLNVLNLSGAIRLYSFPL-GISKLISLQHLDLSNTG 136 (386)
Q Consensus 58 ~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~-~~~~l~~L~~L~l~~~~ 136 (386)
.++++++.+..+|.. ..++|+.|++++| .+..++...++.+++|++|++++| .+..++. .+..+++|++|++++|.
T Consensus 11 ~l~~~~~~l~~~p~~-~~~~l~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~N~ 87 (177)
T 2o6r_A 11 EIRCNSKGLTSVPTG-IPSSATRLELESN-KLQSLPHGVFDKLTQLTKLSLSQN-QIQSLPDGVFDKLTKLTILYLHENK 87 (177)
T ss_dssp EEECCSSCCSSCCTT-CCTTCSEEECCSS-CCCCCCTTTTTTCTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred EEEecCCCCccCCCC-CCCCCcEEEeCCC-cccEeCHHHhcCcccccEEECCCC-cceEeChhHccCCCccCEEECCCCC
Confidence 344444444444321 2245555555555 444444444555566666666655 5554432 34556666666666666
Q ss_pred CCcccHh-hhccCCCCEEEccCCccccccchhhhcCCCCCcEEEEeccCCcc
Q 040192 137 IAELPKE-LNALVNLTCLNLEETWRLTVIPRRLISSFSSLHVLRIFGSGYSY 187 (386)
Q Consensus 137 i~~l~~~-~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~ 187 (386)
++.++.. +..+++|+.|++++| .+..++..++..+++|+.|++++|.+..
T Consensus 88 l~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~l~~L~~L~l~~N~~~~ 138 (177)
T 2o6r_A 88 LQSLPNGVFDKLTQLKELALDTN-QLKSVPDGIFDRLTSLQKIWLHTNPWDC 138 (177)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred ccccCHHHhhCCcccCEEECcCC-cceEeCHHHhcCCcccCEEEecCCCeec
Confidence 6655532 455666666666666 3445555445566666666666665544
No 126
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.37 E-value=5.6e-12 Score=105.43 Aligned_cols=128 Identities=19% Similarity=0.285 Sum_probs=110.2
Q ss_pred ccEEEecCCcccccCCCCCCCCCcEEecccCcCCCcCChhhhcCCCcCceecccCCccccccc-hhhcCCCccCEEEcCC
Q 040192 56 VRRLSLMENQIENLSEVPTCPYLRTLFLNNNAPLRRIDSGFFQSMPRLNVLNLSGAIRLYSFP-LGISKLISLQHLDLSN 134 (386)
Q Consensus 56 L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~ 134 (386)
-+.++++++.+..+|.. -.++|+.|++++| .+..++.. +..+++|++|++++| .+..++ ..|..+++|++|++++
T Consensus 12 ~~~l~~~~~~l~~ip~~-~~~~l~~L~L~~n-~i~~ip~~-~~~l~~L~~L~Ls~N-~i~~i~~~~f~~l~~L~~L~Ls~ 87 (193)
T 2wfh_A 12 DTVVRCSNKGLKVLPKG-IPRDVTELYLDGN-QFTLVPKE-LSNYKHLTLIDLSNN-RISTLSNQSFSNMTQLLTLILSY 87 (193)
T ss_dssp TTEEECTTSCCSSCCSC-CCTTCCEEECCSS-CCCSCCGG-GGGCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCEEEcCCCCCCcCCCC-CCCCCCEEECCCC-cCchhHHH-hhcccCCCEEECCCC-cCCEeCHhHccCCCCCCEEECCC
Confidence 35788999999988764 3469999999999 78888854 899999999999999 888774 5689999999999999
Q ss_pred CCCCcccH-hhhccCCCCEEEccCCccccccchhhhcCCCCCcEEEEeccCCccc
Q 040192 135 TGIAELPK-ELNALVNLTCLNLEETWRLTVIPRRLISSFSSLHVLRIFGSGYSYS 188 (386)
Q Consensus 135 ~~i~~l~~-~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~ 188 (386)
|.++.++. .+..+++|+.|++++| .+..++..++..+++|+.|++++|.+.-.
T Consensus 88 N~l~~i~~~~f~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N~~~C~ 141 (193)
T 2wfh_A 88 NRLRCIPPRTFDGLKSLRLLSLHGN-DISVVPEGAFNDLSALSHLAIGANPLYCD 141 (193)
T ss_dssp SCCCBCCTTTTTTCTTCCEEECCSS-CCCBCCTTTTTTCTTCCEEECCSSCEECS
T ss_pred CccCEeCHHHhCCCCCCCEEECCCC-CCCeeChhhhhcCccccEEEeCCCCeecC
Confidence 99998774 6889999999999999 66778876689999999999999977644
No 127
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.37 E-value=3.1e-12 Score=106.93 Aligned_cols=108 Identities=27% Similarity=0.386 Sum_probs=54.9
Q ss_pred CCcEEecccCcCCCcCCh-hhhcCCCcCceecccCCcccccc-chhhcCCCccCEEEcCCCCCCcccH-hhhccCCCCEE
Q 040192 77 YLRTLFLNNNAPLRRIDS-GFFQSMPRLNVLNLSGAIRLYSF-PLGISKLISLQHLDLSNTGIAELPK-ELNALVNLTCL 153 (386)
Q Consensus 77 ~L~~L~l~~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~-~~~~~~l~~L~~L~l~~~~i~~l~~-~~~~l~~L~~L 153 (386)
+|+.|++++| .+..+++ ..++.+++|++|++++| .+..+ |..+..+++|++|++++|.++.++. .+..+++|+.|
T Consensus 30 ~l~~L~l~~n-~i~~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 107 (192)
T 1w8a_A 30 HTTELLLNDN-ELGRISSDGLFGRLPHLVKLELKRN-QLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTL 107 (192)
T ss_dssp TCSEEECCSC-CCCSBCCSCSGGGCTTCCEEECCSS-CCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEE
T ss_pred CCCEEECCCC-cCCccCCccccccCCCCCEEECCCC-CCCCcCHhHcCCcccCCEEECCCCcCCccCHHHhcCCCCCCEE
Confidence 4455555554 3443332 12445555555555555 44443 4445555555555555555554432 24455566666
Q ss_pred EccCCccccccchhhhcCCCCCcEEEEeccCCcc
Q 040192 154 NLEETWRLTVIPRRLISSFSSLHVLRIFGSGYSY 187 (386)
Q Consensus 154 ~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~ 187 (386)
++++|.. ..++...+..+++|+.|++++|.+..
T Consensus 108 ~L~~N~l-~~~~~~~~~~l~~L~~L~L~~N~l~c 140 (192)
T 1w8a_A 108 NLYDNQI-SCVMPGSFEHLNSLTSLNLASNPFNC 140 (192)
T ss_dssp ECCSSCC-CEECTTSSTTCTTCCEEECTTCCBCC
T ss_pred ECCCCcC-CeeCHHHhhcCCCCCEEEeCCCCccC
Confidence 6666532 33322235556666666666665543
No 128
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.34 E-value=7.1e-12 Score=104.74 Aligned_cols=129 Identities=24% Similarity=0.289 Sum_probs=108.6
Q ss_pred ccEEEEcCCCCCCCCcccccccCccEEEecCCcccccCC---CCCCCCCcEEecccCcCCCcCChhhhcCCCcCceeccc
Q 040192 33 EEHLVYAGAGLSETPDVRKWEKNVRRLSLMENQIENLSE---VPTCPYLRTLFLNNNAPLRRIDSGFFQSMPRLNVLNLS 109 (386)
Q Consensus 33 ~~~l~~~~~~l~~~p~~~~~~~~L~~L~l~~~~~~~~~~---~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~ 109 (386)
...+++.+.++.++|.. ++.++++|++++|.+..++. ...+++|++|++++| .+..+.+..+..+++|++|+++
T Consensus 10 ~~~l~~s~~~l~~ip~~--~~~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~Ls 86 (192)
T 1w8a_A 10 GTTVDCTGRGLKEIPRD--IPLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRN-QLTGIEPNAFEGASHIQELQLG 86 (192)
T ss_dssp TTEEECTTSCCSSCCSC--CCTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSS-CCCCBCTTTTTTCTTCCEEECC
T ss_pred CCEEEcCCCCcCcCccC--CCCCCCEEECCCCcCCccCCccccccCCCCCEEECCCC-CCCCcCHhHcCCcccCCEEECC
Confidence 35788999999999862 22389999999999999765 378999999999999 7777766668999999999999
Q ss_pred CCccccccc-hhhcCCCccCEEEcCCCCCCcc-cHhhhccCCCCEEEccCCccccccc
Q 040192 110 GAIRLYSFP-LGISKLISLQHLDLSNTGIAEL-PKELNALVNLTCLNLEETWRLTVIP 165 (386)
Q Consensus 110 ~~~~~~~~~-~~~~~l~~L~~L~l~~~~i~~l-~~~~~~l~~L~~L~l~~~~~~~~~~ 165 (386)
+| .+..++ ..+..+++|++|++++|.++.+ |..+..+++|+.|++++|+...+.+
T Consensus 87 ~N-~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~ 143 (192)
T 1w8a_A 87 EN-KIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCH 143 (192)
T ss_dssp SC-CCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGG
T ss_pred CC-cCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCcCc
Confidence 99 888764 5588999999999999999966 5678899999999999996654443
No 129
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.34 E-value=4.6e-13 Score=134.43 Aligned_cols=110 Identities=25% Similarity=0.334 Sum_probs=68.8
Q ss_pred CCCCCCcEEecccCcCCCcCChhhhcCCCcCceecccCCccccccchhhcCCCccCEEEcCCCCCCcccHhhhccCCCCE
Q 040192 73 PTCPYLRTLFLNNNAPLRRIDSGFFQSMPRLNVLNLSGAIRLYSFPLGISKLISLQHLDLSNTGIAELPKELNALVNLTC 152 (386)
Q Consensus 73 ~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~l~~~~~~l~~L~~ 152 (386)
..++.|+.|++++| .+..++..+ ..+++|++|++++| .+..+|..++.+++|++|++++|.++.+|..++.+++|++
T Consensus 221 ~~l~~L~~L~Ls~n-~l~~l~~~~-~~l~~L~~L~Ls~N-~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~ 297 (727)
T 4b8c_D 221 YDDQLWHALDLSNL-QIFNISANI-FKYDFLTRLYLNGN-SLTELPAEIKNLSNLRVLDLSHNRLTSLPAELGSCFQLKY 297 (727)
T ss_dssp -CCCCCCEEECTTS-CCSCCCGGG-GGCCSCSCCBCTTS-CCSCCCGGGGGGTTCCEEECTTSCCSSCCSSGGGGTTCSE
T ss_pred ccCCCCcEEECCCC-CCCCCChhh-cCCCCCCEEEeeCC-cCcccChhhhCCCCCCEEeCcCCcCCccChhhcCCCCCCE
Confidence 45566666666666 555566553 35666666666666 5666666666666666666666666666666666666666
Q ss_pred EEccCCccccccchhhhcCCCCCcEEEEeccCCcc
Q 040192 153 LNLEETWRLTVIPRRLISSFSSLHVLRIFGSGYSY 187 (386)
Q Consensus 153 L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~ 187 (386)
|++++| .++.+|.. ++.+++|+.|++++|.+.+
T Consensus 298 L~L~~N-~l~~lp~~-~~~l~~L~~L~L~~N~l~~ 330 (727)
T 4b8c_D 298 FYFFDN-MVTTLPWE-FGNLCNLQFLGVEGNPLEK 330 (727)
T ss_dssp EECCSS-CCCCCCSS-TTSCTTCCCEECTTSCCCS
T ss_pred EECCCC-CCCccChh-hhcCCCccEEeCCCCccCC
Confidence 666666 44566655 6666666666666665554
No 130
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.32 E-value=1.8e-11 Score=100.84 Aligned_cols=129 Identities=23% Similarity=0.354 Sum_probs=108.7
Q ss_pred ccEEEEcCCCCCCCCcccccccCccEEEecCCcccccCCC--CCCCCCcEEecccCcCCCcCChhhhcCCCcCceecccC
Q 040192 33 EEHLVYAGAGLSETPDVRKWEKNVRRLSLMENQIENLSEV--PTCPYLRTLFLNNNAPLRRIDSGFFQSMPRLNVLNLSG 110 (386)
Q Consensus 33 ~~~l~~~~~~l~~~p~~~~~~~~L~~L~l~~~~~~~~~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~ 110 (386)
...+.+.+.++..+|.. ..+ ++++|++++|.+..++.. ..+++|++|++++| .+..+++..+..+++|++|++++
T Consensus 9 ~~~l~~~~~~l~~~p~~-~~~-~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~ 85 (177)
T 2o6r_A 9 GTEIRCNSKGLTSVPTG-IPS-SATRLELESNKLQSLPHGVFDKLTQLTKLSLSQN-QIQSLPDGVFDKLTKLTILYLHE 85 (177)
T ss_dssp TTEEECCSSCCSSCCTT-CCT-TCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCEEEecCCCCccCCCC-CCC-CCcEEEeCCCcccEeCHHHhcCcccccEEECCCC-cceEeChhHccCCCccCEEECCC
Confidence 45678888888888742 234 899999999999987654 78999999999999 88888887788999999999999
Q ss_pred Cccccccch-hhcCCCccCEEEcCCCCCCcccHh-hhccCCCCEEEccCCccccccc
Q 040192 111 AIRLYSFPL-GISKLISLQHLDLSNTGIAELPKE-LNALVNLTCLNLEETWRLTVIP 165 (386)
Q Consensus 111 ~~~~~~~~~-~~~~l~~L~~L~l~~~~i~~l~~~-~~~l~~L~~L~l~~~~~~~~~~ 165 (386)
| .+..++. .+..+++|++|++++|.++.+|.. +..+++|+.|++++|+.....+
T Consensus 86 N-~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 141 (177)
T 2o6r_A 86 N-KLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 141 (177)
T ss_dssp S-CCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred C-CccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeeccCc
Confidence 9 8887764 468899999999999999988865 4779999999999996655443
No 131
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.31 E-value=4.6e-12 Score=115.28 Aligned_cols=98 Identities=12% Similarity=0.033 Sum_probs=54.9
Q ss_pred ccCcccEEEecCCCCCCcccc--ccCCCCCcEEeecCCCccchhhccCcccccCCCCcccccc-eeeeccccccccccC-
Q 040192 250 VFHSLKKFQISYCKELKDLTF--LIFAPNLKSIEVDSCYALEEIVSDVPEVMMGNLNPFAQFH-FLCFSYLPNLKSIYR- 325 (386)
Q Consensus 250 ~~~~L~~L~l~~~~~l~~~~~--l~~l~~L~~L~l~~c~~~~~~~~~~~~~~~~~~~~~~~L~-~L~l~~~~~l~~~~~- 325 (386)
.+++|+.|++.+| .++.++. +..+++|+.+++.+. ++.+.. ..+.++++|+ .+++.+ .++.+..
T Consensus 224 ~~~~L~~l~L~~n-~i~~I~~~aF~~~~~L~~l~l~~n--i~~I~~-------~aF~~~~~L~~~l~l~~--~l~~I~~~ 291 (329)
T 3sb4_A 224 YMPNLVSLDISKT-NATTIPDFTFAQKKYLLKIKLPHN--LKTIGQ-------RVFSNCGRLAGTLELPA--SVTAIEFG 291 (329)
T ss_dssp HCTTCCEEECTTB-CCCEECTTTTTTCTTCCEEECCTT--CCEECT-------TTTTTCTTCCEEEEECT--TCCEECTT
T ss_pred hcCCCeEEECCCC-CcceecHhhhhCCCCCCEEECCcc--cceehH-------HHhhCChhccEEEEEcc--cceEEchh
Confidence 3566666666665 3554432 455666666666652 555544 3666666666 666665 4555432
Q ss_pred CCcCCCCccEEeecCcccCcCCCCCcccccCcceE
Q 040192 326 KPLPFPHLKEMKVIHCLKLKKLPLDSNRAKERKIV 360 (386)
Q Consensus 326 ~~~~~~~L~~L~i~~c~~L~~l~~~~~~~~~~l~i 360 (386)
....|++|+.+++.+ .+++.++.+......+++.
T Consensus 292 aF~~c~~L~~l~l~~-n~i~~I~~~aF~~~~~L~~ 325 (329)
T 3sb4_A 292 AFMGCDNLRYVLATG-DKITTLGDELFGNGVPSKL 325 (329)
T ss_dssp TTTTCTTEEEEEECS-SCCCEECTTTTCTTCCCCE
T ss_pred hhhCCccCCEEEeCC-CccCccchhhhcCCcchhh
Confidence 344566666666654 4566665554443333333
No 132
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.30 E-value=4.7e-12 Score=127.08 Aligned_cols=135 Identities=23% Similarity=0.258 Sum_probs=96.5
Q ss_pred ccccccCccEEEecCCcccccCCC-CCCCCCcEEecccCcCCCcCChhhhcCCCcCceecccCCccccccchhhcCCCcc
Q 040192 49 VRKWEKNVRRLSLMENQIENLSEV-PTCPYLRTLFLNNNAPLRRIDSGFFQSMPRLNVLNLSGAIRLYSFPLGISKLISL 127 (386)
Q Consensus 49 ~~~~~~~L~~L~l~~~~~~~~~~~-~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L 127 (386)
+..+. .|+.|++++|.+..++.. ..+++|++|++++| .+..+|.. ++.+++|++|++++| .+..+|..++.+++|
T Consensus 220 ~~~l~-~L~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~N-~l~~lp~~-~~~l~~L~~L~Ls~N-~l~~lp~~~~~l~~L 295 (727)
T 4b8c_D 220 KYDDQ-LWHALDLSNLQIFNISANIFKYDFLTRLYLNGN-SLTELPAE-IKNLSNLRVLDLSHN-RLTSLPAELGSCFQL 295 (727)
T ss_dssp --CCC-CCCEEECTTSCCSCCCGGGGGCCSCSCCBCTTS-CCSCCCGG-GGGGTTCCEEECTTS-CCSSCCSSGGGGTTC
T ss_pred hccCC-CCcEEECCCCCCCCCChhhcCCCCCCEEEeeCC-cCcccChh-hhCCCCCCEEeCcCC-cCCccChhhcCCCCC
Confidence 44555 788888888888777655 67888888888888 66677766 678888888888888 777778778888888
Q ss_pred CEEEcCCCCCCcccHhhhccCCCCEEEccCCccccccchhhhcCCC-CCcEEEEeccCCccc
Q 040192 128 QHLDLSNTGIAELPKELNALVNLTCLNLEETWRLTVIPRRLISSFS-SLHVLRIFGSGYSYS 188 (386)
Q Consensus 128 ~~L~l~~~~i~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~-~L~~L~l~~~~~~~~ 188 (386)
++|++++|.++.+|..++.+++|+.|++++|.....+|.. +..+. .+..+++++|.+...
T Consensus 296 ~~L~L~~N~l~~lp~~~~~l~~L~~L~L~~N~l~~~~p~~-~~~~~~~~~~l~l~~N~l~~~ 356 (727)
T 4b8c_D 296 KYFYFFDNMVTTLPWEFGNLCNLQFLGVEGNPLEKQFLKI-LTEKSVTGLIFYLRDNRPEIP 356 (727)
T ss_dssp SEEECCSSCCCCCCSSTTSCTTCCCEECTTSCCCSHHHHH-HHHHHHHHHHHHHHHCCCCCC
T ss_pred CEEECCCCCCCccChhhhcCCCccEEeCCCCccCCCChHH-HhhcchhhhHHhhccCcccCc
Confidence 8888888888888877888888888888888554445543 43322 122355666655543
No 133
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.29 E-value=2.7e-11 Score=110.22 Aligned_cols=276 Identities=13% Similarity=0.063 Sum_probs=168.2
Q ss_pred ccEEEEcCCCC-CCCCcccc-cccCccEEEecCCcccccCCC-CCCCCCcEEecccCcCCCcCChhhhcC--------CC
Q 040192 33 EEHLVYAGAGL-SETPDVRK-WEKNVRRLSLMENQIENLSEV-PTCPYLRTLFLNNNAPLRRIDSGFFQS--------MP 101 (386)
Q Consensus 33 ~~~l~~~~~~l-~~~p~~~~-~~~~L~~L~l~~~~~~~~~~~-~~~~~L~~L~l~~~~~~~~~~~~~~~~--------l~ 101 (386)
...+.+.|.-. .++..+.. ++ +|+.|++++|.+..+... ..++.++.+.+..+ .++..+|.+ |+
T Consensus 27 l~~L~l~g~i~~~~~~~l~~~l~-~L~~LdLs~n~i~~~~~~~~~~~~~~~~~~~~~----~I~~~aF~~~~~~~~~g~~ 101 (329)
T 3sb4_A 27 ITHLTLTGKLNAEDFRHLRDEFP-SLKVLDISNAEIKMYSGKAGTYPNGKFYIYMAN----FVPAYAFSNVVNGVTKGKQ 101 (329)
T ss_dssp CSEEEEEEEECHHHHHHHHHSCT-TCCEEEEEEEEECCEEESSSSSGGGCCEEECTT----EECTTTTEEEETTEEEECT
T ss_pred eeEEEEeccccHHHHHHHHHhhc-cCeEEecCcceeEEecCcccccccccccccccc----ccCHHHhcccccccccccC
Confidence 45566654311 11222334 55 899999999998832222 33444455554443 566666778 99
Q ss_pred cCceecccCCcccccc-chhhcCCCccCEEEcCCCCCCcccH-hhhccCCCCEEEccCCc---cccccchhhhcCCCCCc
Q 040192 102 RLNVLNLSGAIRLYSF-PLGISKLISLQHLDLSNTGIAELPK-ELNALVNLTCLNLEETW---RLTVIPRRLISSFSSLH 176 (386)
Q Consensus 102 ~L~~L~l~~~~~~~~~-~~~~~~l~~L~~L~l~~~~i~~l~~-~~~~l~~L~~L~l~~~~---~~~~~~~~~l~~l~~L~ 176 (386)
+|+.+.+.. .+..+ ..+|..|++|+.++++.+.+..++. .+..+.++..+...... ....+...++..+..|+
T Consensus 102 ~L~~l~L~~--~i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L~ 179 (329)
T 3sb4_A 102 TLEKVILSE--KIKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPLE 179 (329)
T ss_dssp TCCC-CBCT--TCCEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCCE
T ss_pred CCcEEECCc--cccchhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhccccccccccccccccc
Confidence 999999876 45655 4578889999999999998876653 45566666666654421 11223333355666666
Q ss_pred -EEEEeccCCccc---cCCCcCcccccccceeecCCccccccc-cccCCcEEEeeccCCccchhcccccccccCcccccc
Q 040192 177 -VLRIFGSGYSYS---DGMIGNGEFEQLCGFRRSKSLDVSALA-DLKRLNRLKIAECYGLAELKMDYKSVVQNTGQSFVF 251 (386)
Q Consensus 177 -~L~l~~~~~~~~---~~~~~l~~L~~L~~~~~~~~~~~~~l~-~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (386)
.+.+........ .......++..+...-.........+. .+++|+.+++.+|+.. .++...+. .+
T Consensus 180 ~~i~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~-~I~~~aF~---------~~ 249 (329)
T 3sb4_A 180 TTIQVGAMGKLEDEIMKAGLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNAT-TIPDFTFA---------QK 249 (329)
T ss_dssp EEEEECTTCCHHHHHHHTTCCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCC-EECTTTTT---------TC
T ss_pred eeEEecCCCcHHHHHhhcccCccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcc-eecHhhhh---------CC
Confidence 444432211110 000111222211100000001111122 3789999999988644 36666665 79
Q ss_pred CcccEEEecCCCCCCccc--cccCCCCCc-EEeecCCCccchhhccCcccccCCCCcccccceeeeccccccccccC-CC
Q 040192 252 HSLKKFQISYCKELKDLT--FLIFAPNLK-SIEVDSCYALEEIVSDVPEVMMGNLNPFAQFHFLCFSYLPNLKSIYR-KP 327 (386)
Q Consensus 252 ~~L~~L~l~~~~~l~~~~--~l~~l~~L~-~L~l~~c~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~-~~ 327 (386)
.+|+.|.+.++ ++.++ .+..+++|+ .+++.+ .++.+.. ..+.++++|+++++.+. .+..++. ..
T Consensus 250 ~~L~~l~l~~n--i~~I~~~aF~~~~~L~~~l~l~~--~l~~I~~-------~aF~~c~~L~~l~l~~n-~i~~I~~~aF 317 (329)
T 3sb4_A 250 KYLLKIKLPHN--LKTIGQRVFSNCGRLAGTLELPA--SVTAIEF-------GAFMGCDNLRYVLATGD-KITTLGDELF 317 (329)
T ss_dssp TTCCEEECCTT--CCEECTTTTTTCTTCCEEEEECT--TCCEECT-------TTTTTCTTEEEEEECSS-CCCEECTTTT
T ss_pred CCCCEEECCcc--cceehHHHhhCChhccEEEEEcc--cceEEch-------hhhhCCccCCEEEeCCC-ccCccchhhh
Confidence 99999999986 66654 367889999 999987 4777766 48999999999999877 6777764 35
Q ss_pred cCCCCccEEe
Q 040192 328 LPFPHLKEMK 337 (386)
Q Consensus 328 ~~~~~L~~L~ 337 (386)
..+++|+.+.
T Consensus 318 ~~~~~L~~ly 327 (329)
T 3sb4_A 318 GNGVPSKLIY 327 (329)
T ss_dssp CTTCCCCEEE
T ss_pred cCCcchhhhc
Confidence 5677777764
No 134
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.27 E-value=5e-10 Score=104.35 Aligned_cols=262 Identities=16% Similarity=0.111 Sum_probs=178.4
Q ss_pred CccEEEecCCcccccCCC--CCCCCCcEEecccCcCCCcCChhhhcCCCcCceecccCCcccccc-chhhcCCCccCEEE
Q 040192 55 NVRRLSLMENQIENLSEV--PTCPYLRTLFLNNNAPLRRIDSGFFQSMPRLNVLNLSGAIRLYSF-PLGISKLISLQHLD 131 (386)
Q Consensus 55 ~L~~L~l~~~~~~~~~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~-~~~~~~l~~L~~L~ 131 (386)
.++.+.+.+ .+..++.. ..+ +|+.+.+..+ +..++..+|.++ .|+.+.+.. .+..+ ..+|..|++|+.++
T Consensus 114 ~l~~i~ip~-~i~~I~~~aF~~~-~L~~i~l~~~--i~~I~~~aF~~~-~L~~i~lp~--~l~~I~~~aF~~c~~L~~l~ 186 (401)
T 4fdw_A 114 GYNEIILPN-SVKSIPKDAFRNS-QIAKVVLNEG--LKSIGDMAFFNS-TVQEIVFPS--TLEQLKEDIFYYCYNLKKAD 186 (401)
T ss_dssp SCSEEECCT-TCCEECTTTTTTC-CCSEEECCTT--CCEECTTTTTTC-CCCEEECCT--TCCEECSSTTTTCTTCCEEE
T ss_pred CccEEEECC-ccCEehHhhcccC-CccEEEeCCC--ccEECHHhcCCC-CceEEEeCC--CccEehHHHhhCcccCCeee
Confidence 455555543 23333333 344 6888888764 667777767775 588888764 45555 45778888889999
Q ss_pred cCCCCCCcccHhhhccCCCCEEEccCCccccccchhhhcCCCCCcEEEEeccCCccccCCCcCcccccccceeecCCccc
Q 040192 132 LSNTGIAELPKELNALVNLTCLNLEETWRLTVIPRRLISSFSSLHVLRIFGSGYSYSDGMIGNGEFEQLCGFRRSKSLDV 211 (386)
Q Consensus 132 l~~~~i~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~L~~~~~~~~~~~ 211 (386)
++.+.++.++.....+.+|+.+.+..+ +..++..++..+.+|+.+.+..+ +...+ .
T Consensus 187 l~~n~l~~I~~~aF~~~~L~~l~lp~~--l~~I~~~aF~~~~~L~~l~l~~~-l~~I~---------------------~ 242 (401)
T 4fdw_A 187 LSKTKITKLPASTFVYAGIEEVLLPVT--LKEIGSQAFLKTSQLKTIEIPEN-VSTIG---------------------Q 242 (401)
T ss_dssp CTTSCCSEECTTTTTTCCCSEEECCTT--CCEECTTTTTTCTTCCCEECCTT-CCEEC---------------------T
T ss_pred cCCCcceEechhhEeecccCEEEeCCc--hheehhhHhhCCCCCCEEecCCC-ccCcc---------------------c
Confidence 888888888765555788888888754 67777777888888888888764 22221 1
Q ss_pred cccccccCCcEEEeeccCCccchhcccccccccCccccccCcccEEEecCCCCC----Ccc--ccccCCCCCcEEeecCC
Q 040192 212 SALADLKRLNRLKIAECYGLAELKMDYKSVVQNTGQSFVFHSLKKFQISYCKEL----KDL--TFLIFAPNLKSIEVDSC 285 (386)
Q Consensus 212 ~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l----~~~--~~l~~l~~L~~L~l~~c 285 (386)
..+.. .+|+.+.+..+ +..+....+. .|++|+.+.+.++... +.+ ..+..|++|+.+.|.+
T Consensus 243 ~aF~~-~~L~~i~lp~~--i~~I~~~aF~---------~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~- 309 (401)
T 4fdw_A 243 EAFRE-SGITTVKLPNG--VTNIASRAFY---------YCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE- 309 (401)
T ss_dssp TTTTT-CCCSEEEEETT--CCEECTTTTT---------TCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT-
T ss_pred ccccc-CCccEEEeCCC--ccEEChhHhh---------CCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC-
Confidence 22333 57888888543 3334555555 7899999999887321 122 2356789999999984
Q ss_pred CccchhhccCcccccCCCCcccccceeeeccccccccccC-CCcCCCCccEEeecCcccCcCCCCCccccc-CcceEEEc
Q 040192 286 YALEEIVSDVPEVMMGNLNPFAQFHFLCFSYLPNLKSIYR-KPLPFPHLKEMKVIHCLKLKKLPLDSNRAK-ERKIVIRG 363 (386)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~-~~~~~~~L~~L~i~~c~~L~~l~~~~~~~~-~~l~i~~~ 363 (386)
.++.+.. ..+.++++|+.+.|... +..+.. ....+ +|+.+.+.+ ..+..++.+..... ..+..++.
T Consensus 310 -~i~~I~~-------~aF~~c~~L~~l~lp~~--l~~I~~~aF~~~-~L~~l~l~~-n~~~~l~~~~F~~~~~~l~~l~v 377 (401)
T 4fdw_A 310 -SIRILGQ-------GLLGGNRKVTQLTIPAN--VTQINFSAFNNT-GIKEVKVEG-TTPPQVFEKVWYGFPDDITVIRV 377 (401)
T ss_dssp -TCCEECT-------TTTTTCCSCCEEEECTT--CCEECTTSSSSS-CCCEEEECC-SSCCBCCCSSCCCSCTTCCEEEE
T ss_pred -ceEEEhh-------hhhcCCCCccEEEECcc--ccEEcHHhCCCC-CCCEEEEcC-CCCcccccccccCCCCCccEEEe
Confidence 3777766 48889999999999654 666643 35567 999999988 46777766654443 67788888
Q ss_pred hHHHHhhhh
Q 040192 364 SRERWEQLQ 372 (386)
Q Consensus 364 ~~~~~~~~~ 372 (386)
|.+..+.++
T Consensus 378 p~~~~~~y~ 386 (401)
T 4fdw_A 378 PAESVEKYK 386 (401)
T ss_dssp CGGGHHHHH
T ss_pred CHHHHHHhh
Confidence 877766653
No 135
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.27 E-value=2.1e-11 Score=118.72 Aligned_cols=105 Identities=23% Similarity=0.301 Sum_probs=86.8
Q ss_pred CCcEEecccCcCCCcCChhhhcCCCcCceecccCCccccccchhhcCCCccCEEEcCCCCCCcccHhhhccCCCCEEEcc
Q 040192 77 YLRTLFLNNNAPLRRIDSGFFQSMPRLNVLNLSGAIRLYSFPLGISKLISLQHLDLSNTGIAELPKELNALVNLTCLNLE 156 (386)
Q Consensus 77 ~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~l~~~~~~l~~L~~L~l~ 156 (386)
.|+.|++++| .+..+|. ++.+++|++|++++| .+..+|..++.+++|+.|++++|.++.+| .++.+++|+.|+++
T Consensus 442 ~L~~L~Ls~n-~l~~lp~--~~~l~~L~~L~Ls~N-~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp-~l~~l~~L~~L~Ls 516 (567)
T 1dce_A 442 DVRVLHLAHK-DLTVLCH--LEQLLLVTHLDLSHN-RLRALPPALAALRCLEVLQASDNALENVD-GVANLPRLQELLLC 516 (567)
T ss_dssp TCSEEECTTS-CCSSCCC--GGGGTTCCEEECCSS-CCCCCCGGGGGCTTCCEEECCSSCCCCCG-GGTTCSSCCEEECC
T ss_pred CceEEEecCC-CCCCCcC--ccccccCcEeecCcc-cccccchhhhcCCCCCEEECCCCCCCCCc-ccCCCCCCcEEECC
Confidence 5888888888 7777775 788888999999888 78888888888889999999998888887 78888889999998
Q ss_pred CCcccccc--chhhhcCCCCCcEEEEeccCCccc
Q 040192 157 ETWRLTVI--PRRLISSFSSLHVLRIFGSGYSYS 188 (386)
Q Consensus 157 ~~~~~~~~--~~~~l~~l~~L~~L~l~~~~~~~~ 188 (386)
+| .+..+ |.. ++.+++|+.|++++|.+.+.
T Consensus 517 ~N-~l~~~~~p~~-l~~l~~L~~L~L~~N~l~~~ 548 (567)
T 1dce_A 517 NN-RLQQSAAIQP-LVSCPRLVLLNLQGNSLCQE 548 (567)
T ss_dssp SS-CCCSSSTTGG-GGGCTTCCEEECTTSGGGGS
T ss_pred CC-CCCCCCCcHH-HhcCCCCCEEEecCCcCCCC
Confidence 88 44555 554 88888999999988888765
No 136
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.21 E-value=8.9e-13 Score=110.85 Aligned_cols=139 Identities=24% Similarity=0.286 Sum_probs=96.2
Q ss_pred CCCCCC-cccccccCccEEEecCCcccccCCCCCCCCCcEEecccCcCCCcCChhhhcCCCcCceecccCCccccccchh
Q 040192 42 GLSETP-DVRKWEKNVRRLSLMENQIENLSEVPTCPYLRTLFLNNNAPLRRIDSGFFQSMPRLNVLNLSGAIRLYSFPLG 120 (386)
Q Consensus 42 ~l~~~p-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~ 120 (386)
.+..+| .+..++ +|++|++++|.+..+|....+++|+.|++++| .+..++.. +..+++|++|++++| .+..+| .
T Consensus 36 ~l~~l~~~~~~l~-~L~~L~ls~n~l~~l~~~~~l~~L~~L~l~~n-~l~~l~~~-~~~~~~L~~L~L~~N-~l~~l~-~ 110 (198)
T 1ds9_A 36 PIEKMDATLSTLK-ACKHLALSTNNIEKISSLSGMENLRILSLGRN-LIKKIENL-DAVADTLEELWISYN-QIASLS-G 110 (198)
T ss_dssp TCCCCHHHHHHTT-TCSEEECSEEEESCCCCHHHHTTCCEEEEEEE-EECSCSSH-HHHHHHCSEEEEEEE-ECCCHH-H
T ss_pred cHhhhhHHHhcCC-CCCEEECCCCCCccccccccCCCCCEEECCCC-Ccccccch-hhcCCcCCEEECcCC-cCCcCC-c
Confidence 344444 366677 78888888888877775577788888888887 66666654 566778888888887 777665 5
Q ss_pred hcCCCccCEEEcCCCCCCcccH--hhhccCCCCEEEccCCccccccc---------hhhhcCCCCCcEEEEeccCCcc
Q 040192 121 ISKLISLQHLDLSNTGIAELPK--ELNALVNLTCLNLEETWRLTVIP---------RRLISSFSSLHVLRIFGSGYSY 187 (386)
Q Consensus 121 ~~~l~~L~~L~l~~~~i~~l~~--~~~~l~~L~~L~l~~~~~~~~~~---------~~~l~~l~~L~~L~l~~~~~~~ 187 (386)
+..+++|++|++++|.++.++. .+..+++|+.|++++|+.....| ..++..+++|+.|+ ++.+..
T Consensus 111 ~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld--~~~i~~ 186 (198)
T 1ds9_A 111 IEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD--GMPVDV 186 (198)
T ss_dssp HHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC--CGGGTT
T ss_pred cccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC--CcccCH
Confidence 6777888888888888776653 56777888888888875433322 22366777888776 444443
No 137
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.14 E-value=2.7e-12 Score=107.91 Aligned_cols=15 Identities=13% Similarity=0.127 Sum_probs=7.0
Q ss_pred ccCCCCCcEEeecCC
Q 040192 271 LIFAPNLKSIEVDSC 285 (386)
Q Consensus 271 l~~l~~L~~L~l~~c 285 (386)
+..+++|+.|++++|
T Consensus 136 l~~l~~L~~L~l~~N 150 (198)
T 1ds9_A 136 LAALDKLEDLLLAGN 150 (198)
T ss_dssp HTTTTTCSEEEECSC
T ss_pred HhcCCCCCEEEecCC
Confidence 344444455555443
No 138
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.14 E-value=4.3e-09 Score=98.02 Aligned_cols=216 Identities=12% Similarity=0.153 Sum_probs=158.9
Q ss_pred CccEEEecCCcccccCCC--CCCCCCcEEecccCcCCCcCChhhhcCCCcCceecccCCccccccchhhcCCCccCEEEc
Q 040192 55 NVRRLSLMENQIENLSEV--PTCPYLRTLFLNNNAPLRRIDSGFFQSMPRLNVLNLSGAIRLYSFPLGISKLISLQHLDL 132 (386)
Q Consensus 55 ~L~~L~l~~~~~~~~~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l 132 (386)
+|+.+.+..+ +..+... .. .+|+.+.+.. .+..++...|.+|++|+.+++..+ .+..++...-.+.+|+.+.+
T Consensus 136 ~L~~i~l~~~-i~~I~~~aF~~-~~L~~i~lp~--~l~~I~~~aF~~c~~L~~l~l~~n-~l~~I~~~aF~~~~L~~l~l 210 (401)
T 4fdw_A 136 QIAKVVLNEG-LKSIGDMAFFN-STVQEIVFPS--TLEQLKEDIFYYCYNLKKADLSKT-KITKLPASTFVYAGIEEVLL 210 (401)
T ss_dssp CCSEEECCTT-CCEECTTTTTT-CCCCEEECCT--TCCEECSSTTTTCTTCCEEECTTS-CCSEECTTTTTTCCCSEEEC
T ss_pred CccEEEeCCC-ccEECHHhcCC-CCceEEEeCC--CccEehHHHhhCcccCCeeecCCC-cceEechhhEeecccCEEEe
Confidence 7888888766 5555544 44 4799999986 577888888999999999999988 88887654334689999999
Q ss_pred CCCCCCccc-HhhhccCCCCEEEccCCccccccchhhhcCCCCCcEEEEeccCCccccCCCcCcccccccceeecCCccc
Q 040192 133 SNTGIAELP-KELNALVNLTCLNLEETWRLTVIPRRLISSFSSLHVLRIFGSGYSYSDGMIGNGEFEQLCGFRRSKSLDV 211 (386)
Q Consensus 133 ~~~~i~~l~-~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~L~~~~~~~~~~~ 211 (386)
..+ +..++ ..+..|++|+.+.+..+ +..++..++.. ++|+.+.+..+ +... ..
T Consensus 211 p~~-l~~I~~~aF~~~~~L~~l~l~~~--l~~I~~~aF~~-~~L~~i~lp~~-i~~I---------------------~~ 264 (401)
T 4fdw_A 211 PVT-LKEIGSQAFLKTSQLKTIEIPEN--VSTIGQEAFRE-SGITTVKLPNG-VTNI---------------------AS 264 (401)
T ss_dssp CTT-CCEECTTTTTTCTTCCCEECCTT--CCEECTTTTTT-CCCSEEEEETT-CCEE---------------------CT
T ss_pred CCc-hheehhhHhhCCCCCCEEecCCC--ccCcccccccc-CCccEEEeCCC-ccEE---------------------Ch
Confidence 854 66665 45778999999999875 57778776777 78999999543 3322 12
Q ss_pred cccccccCCcEEEeeccCCc----cchhcccccccccCccccccCcccEEEecCCCCCCccc--cccCCCCCcEEeecCC
Q 040192 212 SALADLKRLNRLKIAECYGL----AELKMDYKSVVQNTGQSFVFHSLKKFQISYCKELKDLT--FLIFAPNLKSIEVDSC 285 (386)
Q Consensus 212 ~~l~~~~~L~~L~l~~~~~~----~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~--~l~~l~~L~~L~l~~c 285 (386)
..+..+++|+.+.+.++... ..+....+. .|++|+.+.+.+ .++.+. .+..+++|+.+.|..
T Consensus 265 ~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~---------~c~~L~~l~l~~--~i~~I~~~aF~~c~~L~~l~lp~- 332 (401)
T 4fdw_A 265 RAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLE---------GCPKLARFEIPE--SIRILGQGLLGGNRKVTQLTIPA- 332 (401)
T ss_dssp TTTTTCTTCCEEEEESSCCCCCTTCEECTTTTT---------TCTTCCEECCCT--TCCEECTTTTTTCCSCCEEEECT-
T ss_pred hHhhCCCCCCEEEeCCccccCCcccEECHHHhh---------CCccCCeEEeCC--ceEEEhhhhhcCCCCccEEEECc-
Confidence 34667889999999876443 123444444 789999999985 466653 356789999999965
Q ss_pred CccchhhccCcccccCCCCcccccceeeeccccccccc
Q 040192 286 YALEEIVSDVPEVMMGNLNPFAQFHFLCFSYLPNLKSI 323 (386)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~ 323 (386)
.++.+.. ..+..+ +|+.+.+.++ .+..+
T Consensus 333 -~l~~I~~-------~aF~~~-~L~~l~l~~n-~~~~l 360 (401)
T 4fdw_A 333 -NVTQINF-------SAFNNT-GIKEVKVEGT-TPPQV 360 (401)
T ss_dssp -TCCEECT-------TSSSSS-CCCEEEECCS-SCCBC
T ss_pred -cccEEcH-------HhCCCC-CCCEEEEcCC-CCccc
Confidence 3677655 477888 9999999987 44444
No 139
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.10 E-value=5.6e-10 Score=91.18 Aligned_cols=56 Identities=30% Similarity=0.415 Sum_probs=21.1
Q ss_pred CccEEEecCCcccccCCC--CCCCCCcEEecccCcCCCcCChhhhcCCCcCceecccCC
Q 040192 55 NVRRLSLMENQIENLSEV--PTCPYLRTLFLNNNAPLRRIDSGFFQSMPRLNVLNLSGA 111 (386)
Q Consensus 55 ~L~~L~l~~~~~~~~~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~ 111 (386)
+++.|++++|.+..++.. ..+++|+.|++++| .+..+++..+..+++|++|++++|
T Consensus 31 ~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N-~l~~l~~~~f~~l~~L~~L~L~~N 88 (170)
T 3g39_A 31 TTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNN-QLTVLPAGVFDKLTQLTQLSLNDN 88 (170)
T ss_dssp TCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CCcEEEcCCCcCCccChhhhcCcccCCEEECCCC-CcCccChhhccCCCCCCEEECCCC
Confidence 344444444444433221 33334444444433 333333333333333333333333
No 140
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.09 E-value=5.9e-10 Score=91.40 Aligned_cols=56 Identities=32% Similarity=0.486 Sum_probs=22.0
Q ss_pred CccEEEecCCcccccCCC--CCCCCCcEEecccCcCCCcCChhhhcCCCcCceecccCC
Q 040192 55 NVRRLSLMENQIENLSEV--PTCPYLRTLFLNNNAPLRRIDSGFFQSMPRLNVLNLSGA 111 (386)
Q Consensus 55 ~L~~L~l~~~~~~~~~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~ 111 (386)
+++.|++++|.+..++.. ..+++|+.|++++| .+..++...+..+++|++|++++|
T Consensus 34 ~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~i~~~~~~~l~~L~~L~L~~N 91 (174)
T 2r9u_A 34 DKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSN-KLTAIPTGVFDKLTQLTQLDLNDN 91 (174)
T ss_dssp TCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CCcEEEeCCCCccccCHHHhcCCcCCCEEECCCC-CCCccChhHhCCcchhhEEECCCC
Confidence 344444444444443221 33444444444444 333333333333444444444433
No 141
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.09 E-value=6e-10 Score=91.33 Aligned_cols=103 Identities=22% Similarity=0.379 Sum_probs=88.3
Q ss_pred ccEEEecCCcccccCCCCCCCCCcEEecccCcCCCcCChhhhcCCCcCceecccCCccccccchh-hcCCCccCEEEcCC
Q 040192 56 VRRLSLMENQIENLSEVPTCPYLRTLFLNNNAPLRRIDSGFFQSMPRLNVLNLSGAIRLYSFPLG-ISKLISLQHLDLSN 134 (386)
Q Consensus 56 L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~-~~~l~~L~~L~l~~ 134 (386)
-+.++++++.+..+|... .++|+.|++++| .+..+++..+..+++|++|++++| .+..+|.. +..+++|++|++++
T Consensus 14 ~~~l~~~~n~l~~iP~~~-~~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~i~~~~~~~l~~L~~L~L~~ 90 (174)
T 2r9u_A 14 QTLVNCQNIRLASVPAGI-PTDKQRLWLNNN-QITKLEPGVFDHLVNLQQLYFNSN-KLTAIPTGVFDKLTQLTQLDLND 90 (174)
T ss_dssp SSEEECCSSCCSSCCSCC-CTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCS
T ss_pred CcEEEeCCCCCCccCCCc-CCCCcEEEeCCC-CccccCHHHhcCCcCCCEEECCCC-CCCccChhHhCCcchhhEEECCC
Confidence 357788888887777642 389999999999 788887766899999999999999 89988754 68999999999999
Q ss_pred CCCCcccHh-hhccCCCCEEEccCCccc
Q 040192 135 TGIAELPKE-LNALVNLTCLNLEETWRL 161 (386)
Q Consensus 135 ~~i~~l~~~-~~~l~~L~~L~l~~~~~~ 161 (386)
|.++.+|.. +..+++|+.|++++|+..
T Consensus 91 N~l~~l~~~~~~~l~~L~~L~L~~N~~~ 118 (174)
T 2r9u_A 91 NHLKSIPRGAFDNLKSLTHIYLYNNPWD 118 (174)
T ss_dssp SCCCCCCTTTTTTCTTCSEEECCSSCBC
T ss_pred CccceeCHHHhccccCCCEEEeCCCCcc
Confidence 999998865 889999999999999543
No 142
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.05 E-value=1.2e-09 Score=89.18 Aligned_cols=104 Identities=19% Similarity=0.336 Sum_probs=89.3
Q ss_pred CccEEEecCCcccccCCCCCCCCCcEEecccCcCCCcCChhhhcCCCcCceecccCCccccccch-hhcCCCccCEEEcC
Q 040192 55 NVRRLSLMENQIENLSEVPTCPYLRTLFLNNNAPLRRIDSGFFQSMPRLNVLNLSGAIRLYSFPL-GISKLISLQHLDLS 133 (386)
Q Consensus 55 ~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~-~~~~l~~L~~L~l~ 133 (386)
..+.++++++.+..+|... .++|+.|++++| .+..+++..+..+++|++|++++| .+..++. .+..+++|++|+++
T Consensus 10 ~~~~l~~s~n~l~~ip~~~-~~~l~~L~L~~N-~i~~~~~~~~~~l~~L~~L~Ls~N-~l~~l~~~~f~~l~~L~~L~L~ 86 (170)
T 3g39_A 10 SGTTVDCSGKSLASVPTGI-PTTTQVLYLYDN-QITKLEPGVFDRLTQLTRLDLDNN-QLTVLPAGVFDKLTQLTQLSLN 86 (170)
T ss_dssp ETTEEECTTSCCSSCCSCC-CTTCSEEECCSS-CCCCCCTTTTTTCTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECC
T ss_pred CCCEEEeCCCCcCccCccC-CCCCcEEEcCCC-cCCccChhhhcCcccCCEEECCCC-CcCccChhhccCCCCCCEEECC
Confidence 3567888888888877643 489999999999 888887776899999999999999 8888865 46899999999999
Q ss_pred CCCCCcccH-hhhccCCCCEEEccCCccc
Q 040192 134 NTGIAELPK-ELNALVNLTCLNLEETWRL 161 (386)
Q Consensus 134 ~~~i~~l~~-~~~~l~~L~~L~l~~~~~~ 161 (386)
+|.++.++. .+..+++|+.|++++|+..
T Consensus 87 ~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 115 (170)
T 3g39_A 87 DNQLKSIPRGAFDNLKSLTHIWLLNNPWD 115 (170)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred CCccCEeCHHHhcCCCCCCEEEeCCCCCC
Confidence 999998886 4789999999999999654
No 143
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.79 E-value=1.9e-08 Score=91.95 Aligned_cols=102 Identities=26% Similarity=0.256 Sum_probs=73.1
Q ss_pred cEEEEcCC-CCCCCCcccccccCccEEEecC-CcccccCCC--CCCCCCcEEecccCcCCCcCChhhhcCCCcCceeccc
Q 040192 34 EHLVYAGA-GLSETPDVRKWEKNVRRLSLME-NQIENLSEV--PTCPYLRTLFLNNNAPLRRIDSGFFQSMPRLNVLNLS 109 (386)
Q Consensus 34 ~~l~~~~~-~l~~~p~~~~~~~~L~~L~l~~-~~~~~~~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~ 109 (386)
..+.+.+. ++..+|.+..+. +|+.|++++ |.+..++.. ..+++|+.|++++| .+..+++..|..+++|++|+|+
T Consensus 11 ~~v~~~~~n~l~~ip~l~~~~-~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~l~~L~~L~l~ 88 (347)
T 2ifg_A 11 SGLRCTRDGALDSLHHLPGAE-NLTELYIENQQHLQHLELRDLRGLGELRNLTIVKS-GLRFVAPDAFHFTPRLSRLNLS 88 (347)
T ss_dssp SCEECCSSCCCTTTTTSCSCS-CCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSS-CCCEECTTGGGSCSCCCEEECC
T ss_pred CEEEcCCCCCCCccCCCCCCC-CeeEEEccCCCCCCCcChhHhccccCCCEEECCCC-ccceeCHHHhcCCcCCCEEeCC
Confidence 34677777 788887766666 788888885 788776643 67888888888887 6777766667788888888888
Q ss_pred CCccccccchhhcCCCccCEEEcCCCCCC
Q 040192 110 GAIRLYSFPLGISKLISLQHLDLSNTGIA 138 (386)
Q Consensus 110 ~~~~~~~~~~~~~~l~~L~~L~l~~~~i~ 138 (386)
+| .+..+|........|+.|++.+|.+.
T Consensus 89 ~N-~l~~~~~~~~~~~~L~~l~l~~N~~~ 116 (347)
T 2ifg_A 89 FN-ALESLSWKTVQGLSLQELVLSGNPLH 116 (347)
T ss_dssp SS-CCSCCCSTTTCSCCCCEEECCSSCCC
T ss_pred CC-ccceeCHHHcccCCceEEEeeCCCcc
Confidence 87 77776544333223788888877765
No 144
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.76 E-value=2.8e-08 Score=90.83 Aligned_cols=103 Identities=18% Similarity=0.217 Sum_probs=87.9
Q ss_pred cEEEecCC-cccccCCCCCCCCCcEEeccc-CcCCCcCChhhhcCCCcCceecccCCcccccc-chhhcCCCccCEEEcC
Q 040192 57 RRLSLMEN-QIENLSEVPTCPYLRTLFLNN-NAPLRRIDSGFFQSMPRLNVLNLSGAIRLYSF-PLGISKLISLQHLDLS 133 (386)
Q Consensus 57 ~~L~l~~~-~~~~~~~~~~~~~L~~L~l~~-~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~-~~~~~~l~~L~~L~l~ 133 (386)
..++.+++ .+..+|....+++|+.|++++ | .+..+++..|+.+++|++|+|++| .+..+ |..|..+++|+.|+++
T Consensus 11 ~~v~~~~~n~l~~ip~l~~~~~L~~L~l~~~n-~l~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~l~~L~~L~l~ 88 (347)
T 2ifg_A 11 SGLRCTRDGALDSLHHLPGAENLTELYIENQQ-HLQHLELRDLRGLGELRNLTIVKS-GLRFVAPDAFHFTPRLSRLNLS 88 (347)
T ss_dssp SCEECCSSCCCTTTTTSCSCSCCSEEECCSCS-SCCEECGGGSCSCCCCSEEECCSS-CCCEECTTGGGSCSCCCEEECC
T ss_pred CEEEcCCCCCCCccCCCCCCCCeeEEEccCCC-CCCCcChhHhccccCCCEEECCCC-ccceeCHHHhcCCcCCCEEeCC
Confidence 35678887 898888888889999999996 7 888888777999999999999999 88877 4578999999999999
Q ss_pred CCCCCcccHhhhccCCCCEEEccCCccc
Q 040192 134 NTGIAELPKELNALVNLTCLNLEETWRL 161 (386)
Q Consensus 134 ~~~i~~l~~~~~~l~~L~~L~l~~~~~~ 161 (386)
+|.++.+|..+.....|+.|++.+|.+.
T Consensus 89 ~N~l~~~~~~~~~~~~L~~l~l~~N~~~ 116 (347)
T 2ifg_A 89 FNALESLSWKTVQGLSLQELVLSGNPLH 116 (347)
T ss_dssp SSCCSCCCSTTTCSCCCCEEECCSSCCC
T ss_pred CCccceeCHHHcccCCceEEEeeCCCcc
Confidence 9999999866554445999999998543
No 145
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.75 E-value=1.8e-09 Score=99.51 Aligned_cols=157 Identities=18% Similarity=0.086 Sum_probs=89.7
Q ss_pred CccEEEecCCcccccC--CC-----CCCCCCcEEecccCcCCCcCC-hhhhcCCCcCceecccCCcccccc-ch----hh
Q 040192 55 NVRRLSLMENQIENLS--EV-----PTCPYLRTLFLNNNAPLRRID-SGFFQSMPRLNVLNLSGAIRLYSF-PL----GI 121 (386)
Q Consensus 55 ~L~~L~l~~~~~~~~~--~~-----~~~~~L~~L~l~~~~~~~~~~-~~~~~~l~~L~~L~l~~~~~~~~~-~~----~~ 121 (386)
++++|++++|.+.... .. ...++|+.|++++| .+++.. ..+...+++|++|++++| .++.. .. .+
T Consensus 73 ~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n-~l~~~~~~~l~~~L~~L~~L~Ls~n-~l~~~~~~~L~~~L 150 (372)
T 3un9_A 73 SLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASC-QLDPAGLRTLLPVFLRARKLGLQLN-SLGPEACKDLRDLL 150 (372)
T ss_dssp TCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTC-CCCHHHHHHTHHHHHTEEEEECCSS-CCCHHHHHHHHHHH
T ss_pred hCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCC-CCCHHHHHHHHHHHHhccHhhcCCC-CCCHHHHHHHHHHH
Confidence 6777888877776521 11 23467778888777 444322 222334567777777777 66532 11 22
Q ss_pred -cCCCccCEEEcCCCCCCc-----ccHhhhccCCCCEEEccCCccccccc----hhhhcCCCCCcEEEEeccCCccccCC
Q 040192 122 -SKLISLQHLDLSNTGIAE-----LPKELNALVNLTCLNLEETWRLTVIP----RRLISSFSSLHVLRIFGSGYSYSDGM 191 (386)
Q Consensus 122 -~~l~~L~~L~l~~~~i~~-----l~~~~~~l~~L~~L~l~~~~~~~~~~----~~~l~~l~~L~~L~l~~~~~~~~~~~ 191 (386)
...++|+.|++++|.++. ++..+..+++|++|++++|. +++.. ...+...++|+.|++++|.+.+.+..
T Consensus 151 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~-l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~ 229 (372)
T 3un9_A 151 LHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTG-LGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAAL 229 (372)
T ss_dssp HSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSS-CHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHH
T ss_pred HhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCC-CCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHH
Confidence 235677777777777652 33445567777777777774 33321 11255666777777777766554100
Q ss_pred CcCcccccccceeecCCccccccccccCCcEEEeeccCCc
Q 040192 192 IGNGEFEQLCGFRRSKSLDVSALADLKRLNRLKIAECYGL 231 (386)
Q Consensus 192 ~~l~~L~~L~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~ 231 (386)
. ....+...++|++|++++|...
T Consensus 230 ~-----------------l~~~L~~~~~L~~L~Ls~N~i~ 252 (372)
T 3un9_A 230 A-----------------LARAAREHPSLELLHLYFNELS 252 (372)
T ss_dssp H-----------------HHHHHHHCSSCCEEECTTSSCC
T ss_pred H-----------------HHHHHHhCCCCCEEeccCCCCC
Confidence 0 0122334566777777777543
No 146
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.74 E-value=4.3e-07 Score=84.48 Aligned_cols=79 Identities=9% Similarity=0.056 Sum_probs=43.6
Q ss_pred CCCCCcEEeecCCCccchhhccCcccccCCCCcccccceeeeccccccccccC-CCcCCCCccEEeecCcccCcCCCCCc
Q 040192 273 FAPNLKSIEVDSCYALEEIVSDVPEVMMGNLNPFAQFHFLCFSYLPNLKSIYR-KPLPFPHLKEMKVIHCLKLKKLPLDS 351 (386)
Q Consensus 273 ~l~~L~~L~l~~c~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~-~~~~~~~L~~L~i~~c~~L~~l~~~~ 351 (386)
.+.+|+.+.+.+ .++.+.. ..+..+.+|+.++|.. .++.+.. ....|.+|+.+.+.. +++.++...
T Consensus 295 ~~~~L~~i~l~~--~i~~I~~-------~aF~~c~~L~~i~lp~--~v~~I~~~aF~~c~~L~~i~lp~--~l~~I~~~a 361 (394)
T 4fs7_A 295 GCSSLTEVKLLD--SVKFIGE-------EAFESCTSLVSIDLPY--LVEEIGKRSFRGCTSLSNINFPL--SLRKIGANA 361 (394)
T ss_dssp TCTTCCEEEECT--TCCEECT-------TTTTTCTTCCEECCCT--TCCEECTTTTTTCTTCCEECCCT--TCCEECTTT
T ss_pred cccccccccccc--ccceech-------hhhcCCCCCCEEEeCC--cccEEhHHhccCCCCCCEEEECc--cccEehHHH
Confidence 456666666653 2444444 3666677777777743 2444432 344567777777643 366665554
Q ss_pred ccccCcceEEEch
Q 040192 352 NRAKERKIVIRGS 364 (386)
Q Consensus 352 ~~~~~~l~i~~~~ 364 (386)
...-..|+.+..|
T Consensus 362 F~~C~~L~~i~lp 374 (394)
T 4fs7_A 362 FQGCINLKKVELP 374 (394)
T ss_dssp BTTCTTCCEEEEE
T ss_pred hhCCCCCCEEEEC
Confidence 4333455555555
No 147
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.73 E-value=6.3e-09 Score=84.19 Aligned_cols=39 Identities=13% Similarity=-0.040 Sum_probs=16.8
Q ss_pred ccceeeeccccccccccC-CCcCCCCccEEeecCcccCcC
Q 040192 308 QFHFLCFSYLPNLKSIYR-KPLPFPHLKEMKVIHCLKLKK 346 (386)
Q Consensus 308 ~L~~L~l~~~~~l~~~~~-~~~~~~~L~~L~i~~c~~L~~ 346 (386)
+|++|+|++|+.+++-.. ....+++|+.|+|++|+.++.
T Consensus 115 ~L~~L~Ls~C~~ITD~Gl~~L~~~~~L~~L~L~~c~~Itd 154 (176)
T 3e4g_A 115 SMLEMEIISCGNVTDKGIIALHHFRNLKYLFLSDLPGVKE 154 (176)
T ss_dssp HCCEEEEESCTTCCHHHHHHGGGCTTCCEEEEESCTTCCC
T ss_pred CCCEEEcCCCCcCCHHHHHHHhcCCCCCEEECCCCCCCCc
Confidence 444555544444443111 122345555555555554443
No 148
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.69 E-value=1.6e-08 Score=81.78 Aligned_cols=72 Identities=17% Similarity=0.298 Sum_probs=36.4
Q ss_pred ccccCCcEEEeeccCCccchhcccccccccCccccccCcccEEEecCCCCCCc--cccccCCCCCcEEeecCCCccchh
Q 040192 215 ADLKRLNRLKIAECYGLAELKMDYKSVVQNTGQSFVFHSLKKFQISYCKELKD--LTFLIFAPNLKSIEVDSCYALEEI 291 (386)
Q Consensus 215 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~--~~~l~~l~~L~~L~l~~c~~~~~~ 291 (386)
..+++|++|++++|..+++.....++... . .+++|++|+|++|..+++ +..+..+++|++|+|++|+.+++.
T Consensus 82 ~~~~~L~~L~L~~C~~ItD~gL~~L~~~~-~----~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~L~~L~L~~c~~Itd~ 155 (176)
T 3e4g_A 82 EGLQYVEKIRLCKCHYIEDGCLERLSQLE-N----LQKSMLEMEIISCGNVTDKGIIALHHFRNLKYLFLSDLPGVKEK 155 (176)
T ss_dssp TTCSCCCEEEEESCTTCCHHHHHHHHTCH-H----HHHHCCEEEEESCTTCCHHHHHHGGGCTTCCEEEEESCTTCCCH
T ss_pred cCCCCCCEEEeCCCCccCHHHHHHHHhcc-c----ccCCCCEEEcCCCCcCCHHHHHHHhcCCCCCEEECCCCCCCCch
Confidence 34556666666666555544444332100 0 023566666666655555 333445566666666666555543
No 149
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.66 E-value=8.6e-09 Score=95.04 Aligned_cols=153 Identities=22% Similarity=0.241 Sum_probs=112.4
Q ss_pred cccEEEEcCCCCCCCC--ccccc-----ccCccEEEecCCcccc--cCCC-CCCCCCcEEecccCcCCCcCChhhh----
Q 040192 32 KEEHLVYAGAGLSETP--DVRKW-----EKNVRRLSLMENQIEN--LSEV-PTCPYLRTLFLNNNAPLRRIDSGFF---- 97 (386)
Q Consensus 32 ~~~~l~~~~~~l~~~p--~~~~~-----~~~L~~L~l~~~~~~~--~~~~-~~~~~L~~L~l~~~~~~~~~~~~~~---- 97 (386)
....+.+.+..+.... .+... . +|++|++++|.+.+ +... ..+++|+.|++++| .+++.....+
T Consensus 73 ~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~-~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n-~l~~~~~~~L~~~L 150 (372)
T 3un9_A 73 SLRQLNLAGVRMTPVKCTVVAAVLGSGRH-ALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLN-SLGPEACKDLRDLL 150 (372)
T ss_dssp TCCEEECTTSCCCHHHHHHHHHHHSSCSS-CEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSS-CCCHHHHHHHHHHH
T ss_pred hCCEEEecCCCCCHHHHHHHHHHHhhCCC-CceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCC-CCCHHHHHHHHHHH
Confidence 3567888887776432 12222 4 89999999999876 3333 56789999999999 6765443322
Q ss_pred -cCCCcCceecccCCccccc-----cchhhcCCCccCEEEcCCCCCCc-----ccHhhhccCCCCEEEccCCccccccch
Q 040192 98 -QSMPRLNVLNLSGAIRLYS-----FPLGISKLISLQHLDLSNTGIAE-----LPKELNALVNLTCLNLEETWRLTVIPR 166 (386)
Q Consensus 98 -~~l~~L~~L~l~~~~~~~~-----~~~~~~~l~~L~~L~l~~~~i~~-----l~~~~~~l~~L~~L~l~~~~~~~~~~~ 166 (386)
...+.|++|++++| .++. ++..+..+++|++|++++|.++. +...+...++|+.|++++|. +++...
T Consensus 151 ~~~~~~L~~L~Ls~n-~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~-i~~~g~ 228 (372)
T 3un9_A 151 LHDQCQITTLRLSNN-PLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNG-AGDTAA 228 (372)
T ss_dssp HSTTCCCCEEECCSS-CCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSC-CCHHHH
T ss_pred HhcCCccceeeCCCC-CCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCC-CCHHHH
Confidence 35789999999999 7764 45556788999999999999863 34566778899999999994 443221
Q ss_pred ----hhhcCCCCCcEEEEeccCCccc
Q 040192 167 ----RLISSFSSLHVLRIFGSGYSYS 188 (386)
Q Consensus 167 ----~~l~~l~~L~~L~l~~~~~~~~ 188 (386)
.++...++|++|++++|.+...
T Consensus 229 ~~l~~~L~~~~~L~~L~Ls~N~i~~~ 254 (372)
T 3un9_A 229 LALARAAREHPSLELLHLYFNELSSE 254 (372)
T ss_dssp HHHHHHHHHCSSCCEEECTTSSCCHH
T ss_pred HHHHHHHHhCCCCCEEeccCCCCCHH
Confidence 1256779999999999988765
No 150
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.60 E-value=1.2e-07 Score=86.81 Aligned_cols=111 Identities=14% Similarity=0.043 Sum_probs=55.5
Q ss_pred ccCCcEEEeeccCCccchhcccccccccCccccccCcccEEEecCCC-------CCCcccc-c--cCCCCCcEEeecCCC
Q 040192 217 LKRLNRLKIAECYGLAELKMDYKSVVQNTGQSFVFHSLKKFQISYCK-------ELKDLTF-L--IFAPNLKSIEVDSCY 286 (386)
Q Consensus 217 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~-------~l~~~~~-l--~~l~~L~~L~l~~c~ 286 (386)
+++|++|.+..|....+ ....+. .. .+|+|++|+|+.+. .+..+.. + ..+|+|++|++.+|.
T Consensus 192 ~~~L~~L~L~~~~l~~~-~l~~l~---~~----~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~ 263 (362)
T 2ra8_A 192 RPNLKSLEIISGGLPDS-VVEDIL---GS----DLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAE 263 (362)
T ss_dssp CTTCSEEEEECSBCCHH-HHHHHH---HS----BCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCT
T ss_pred CCCCcEEEEecCCCChH-HHHHHH---Hc----cCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCC
Confidence 45677777766543322 111111 00 46777777764311 1111211 1 246777777777765
Q ss_pred ccchhhccCcccccCCCCcccccceeeecccccccc-----ccCCCcCCCCccEEeecCc
Q 040192 287 ALEEIVSDVPEVMMGNLNPFAQFHFLCFSYLPNLKS-----IYRKPLPFPHLKEMKVIHC 341 (386)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~-----~~~~~~~~~~L~~L~i~~c 341 (386)
......... .....+|+|++|+|+.+ .+.+ +......+++|+.|++++|
T Consensus 264 i~~~~~~~l-----a~a~~~~~L~~LdLs~n-~L~d~G~~~L~~~L~~l~~L~~L~L~~n 317 (362)
T 2ra8_A 264 EQNVVVEMF-----LESDILPQLETMDISAG-VLTDEGARLLLDHVDKIKHLKFINMKYN 317 (362)
T ss_dssp THHHHHHHH-----HHCSSGGGCSEEECCSS-CCBHHHHHHHHTTHHHHTTCSEEECCSB
T ss_pred CchHHHHHH-----HhCccCCCCCEEECCCC-CCChHHHHHHHhhcccCCcceEEECCCC
Confidence 332211100 11235677777777766 4443 2323345677777777765
No 151
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=98.59 E-value=3.8e-06 Score=78.04 Aligned_cols=121 Identities=12% Similarity=0.234 Sum_probs=75.4
Q ss_pred CccEEEecCCcccccCCC--CCCCCCcEEecccCc--CCCcCChhhhcCCCcCceecccCCcccccc-chhhcCCCccCE
Q 040192 55 NVRRLSLMENQIENLSEV--PTCPYLRTLFLNNNA--PLRRIDSGFFQSMPRLNVLNLSGAIRLYSF-PLGISKLISLQH 129 (386)
Q Consensus 55 ~L~~L~l~~~~~~~~~~~--~~~~~L~~L~l~~~~--~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~-~~~~~~l~~L~~ 129 (386)
.|+.+.+... ++.+... ..|.+|+.+.+..+. .+..++..+|..|..|+.+.+..+ +..+ ..++..+.+|+.
T Consensus 65 ~L~sI~iP~s-vt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~--~~~I~~~aF~~c~~L~~ 141 (394)
T 4gt6_A 65 VLTSVQIPDT-VTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS--VTEIDSEAFHHCEELDT 141 (394)
T ss_dssp CCCEEEECTT-CCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT--CSEECTTTTTTCTTCCE
T ss_pred cCEEEEECCC-eeEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc--cceehhhhhhhhccccc
Confidence 4788887643 5554433 778899998887651 356677777888888888876543 4444 346677888888
Q ss_pred EEcCCCCCCccc-HhhhccCCCCEEEccCCccccccchhhhcCCCCCcEEEEec
Q 040192 130 LDLSNTGIAELP-KELNALVNLTCLNLEETWRLTVIPRRLISSFSSLHVLRIFG 182 (386)
Q Consensus 130 L~l~~~~i~~l~-~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~ 182 (386)
+.+..+ +..+. ..+..+.+|+.+.+..+ +..+...++. ...|+.+.+..
T Consensus 142 i~lp~~-~~~I~~~~F~~c~~L~~i~~~~~--~~~I~~~aF~-~~~l~~i~ip~ 191 (394)
T 4gt6_A 142 VTIPEG-VTSVADGMFSYCYSLHTVTLPDS--VTAIEERAFT-GTALTQIHIPA 191 (394)
T ss_dssp EECCTT-CCEECTTTTTTCTTCCEEECCTT--CCEECTTTTT-TCCCSEEEECT
T ss_pred ccccce-eeeecccceecccccccccccce--eeEecccccc-ccceeEEEECC
Confidence 887643 23232 34556777777777554 3444444343 34566666544
No 152
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.52 E-value=2.3e-06 Score=79.45 Aligned_cols=105 Identities=15% Similarity=0.272 Sum_probs=76.2
Q ss_pred CCCCCCcEEecccCcCCCcCChhhhcCCCcCceecccCCcccccc-chhhcCCCccCEEEcCCCCCCcccHhhhccCCCC
Q 040192 73 PTCPYLRTLFLNNNAPLRRIDSGFFQSMPRLNVLNLSGAIRLYSF-PLGISKLISLQHLDLSNTGIAELPKELNALVNLT 151 (386)
Q Consensus 73 ~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~-~~~~~~l~~L~~L~l~~~~i~~l~~~~~~l~~L~ 151 (386)
..|++|+.+.+..+ ...++..+|.++.+|+.+.+..+ +..+ ..++.++..|+.+.+..+.. .+........+|+
T Consensus 159 ~~c~~L~~i~l~~~--~~~I~~~~F~~c~~L~~i~l~~~--~~~I~~~~F~~~~~L~~i~~~~~~~-~i~~~~~~~~~l~ 233 (394)
T 4fs7_A 159 ATCESLEYVSLPDS--METLHNGLFSGCGKLKSIKLPRN--LKIIRDYCFAECILLENMEFPNSLY-YLGDFALSKTGVK 233 (394)
T ss_dssp TTCTTCCEEECCTT--CCEECTTTTTTCTTCCBCCCCTT--CCEECTTTTTTCTTCCBCCCCTTCC-EECTTTTTTCCCC
T ss_pred cccCCCcEEecCCc--cceeccccccCCCCceEEEcCCC--ceEeCchhhccccccceeecCCCce-EeehhhcccCCCc
Confidence 78899999999764 46677777999999999998764 4444 45678888888887765432 2233344567888
Q ss_pred EEEccCCccccccchhhhcCCCCCcEEEEeccC
Q 040192 152 CLNLEETWRLTVIPRRLISSFSSLHVLRIFGSG 184 (386)
Q Consensus 152 ~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 184 (386)
.+.+... ...+...++..+..|+.+.+..+.
T Consensus 234 ~i~ip~~--~~~i~~~~f~~~~~l~~~~~~~~~ 264 (394)
T 4fs7_A 234 NIIIPDS--FTELGKSVFYGCTDLESISIQNNK 264 (394)
T ss_dssp EEEECTT--CCEECSSTTTTCSSCCEEEECCTT
T ss_pred eEEECCC--ceecccccccccccceeEEcCCCc
Confidence 8888654 355666668889999999887653
No 153
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=98.48 E-value=2.1e-05 Score=72.96 Aligned_cols=77 Identities=14% Similarity=0.208 Sum_probs=34.1
Q ss_pred ccCcccEEEecCCCCCCccc--cccCCCCCcEEeecCCCccchhhccCcccccCCCCcccccceeeeccccccccccC-C
Q 040192 250 VFHSLKKFQISYCKELKDLT--FLIFAPNLKSIEVDSCYALEEIVSDVPEVMMGNLNPFAQFHFLCFSYLPNLKSIYR-K 326 (386)
Q Consensus 250 ~~~~L~~L~l~~~~~l~~~~--~l~~l~~L~~L~l~~c~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~-~ 326 (386)
.+++|+.+.+.. .++.++ .+..+.+|+.+.|.. .++.+.. ..+.++.+|+.+.|.. .++.+.. .
T Consensus 286 ~c~~L~~i~l~~--~i~~I~~~aF~~c~~L~~i~lp~--~v~~I~~-------~aF~~C~~L~~i~ip~--sv~~I~~~a 352 (394)
T 4gt6_A 286 NCPALQDIEFSS--RITELPESVFAGCISLKSIDIPE--GITQILD-------DAFAGCEQLERIAIPS--SVTKIPESA 352 (394)
T ss_dssp TCTTCCEEECCT--TCCEECTTTTTTCTTCCEEECCT--TCCEECT-------TTTTTCTTCCEEEECT--TCCBCCGGG
T ss_pred cccccccccCCC--cccccCceeecCCCCcCEEEeCC--cccEehH-------hHhhCCCCCCEEEECc--ccCEEhHhH
Confidence 345555555532 233322 133455555555543 1344333 2555555555555532 2333321 2
Q ss_pred CcCCCCccEEeec
Q 040192 327 PLPFPHLKEMKVI 339 (386)
Q Consensus 327 ~~~~~~L~~L~i~ 339 (386)
...|.+|+.+++.
T Consensus 353 F~~C~~L~~i~~~ 365 (394)
T 4gt6_A 353 FSNCTALNNIEYS 365 (394)
T ss_dssp GTTCTTCCEEEES
T ss_pred hhCCCCCCEEEEC
Confidence 3345555555554
No 154
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.39 E-value=6.5e-07 Score=81.88 Aligned_cols=13 Identities=15% Similarity=0.470 Sum_probs=7.2
Q ss_pred cccccceeeeccc
Q 040192 305 PFAQFHFLCFSYL 317 (386)
Q Consensus 305 ~~~~L~~L~l~~~ 317 (386)
.+++|+.|++++|
T Consensus 305 ~l~~L~~L~L~~n 317 (362)
T 2ra8_A 305 KIKHLKFINMKYN 317 (362)
T ss_dssp HHTTCSEEECCSB
T ss_pred cCCcceEEECCCC
Confidence 4455555555555
No 155
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=98.34 E-value=5.8e-05 Score=69.51 Aligned_cols=125 Identities=12% Similarity=0.220 Sum_probs=72.5
Q ss_pred CcccccccCccEEEecCCcccccCCC--CCCCCCcEEecccCcCCCcCChhhhcCCCcCceecccCCccccccc-hhhcC
Q 040192 47 PDVRKWEKNVRRLSLMENQIENLSEV--PTCPYLRTLFLNNNAPLRRIDSGFFQSMPRLNVLNLSGAIRLYSFP-LGISK 123 (386)
Q Consensus 47 p~~~~~~~~L~~L~l~~~~~~~~~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~~~~ 123 (386)
|.+.... +++.+.+.. .++.+... ..|.+|+.+.+.. .+..++..+|.++ .|+.+.+-. .+..+. .+|..
T Consensus 40 ~~~~~~~-~i~~v~ip~-~vt~Ig~~aF~~C~~L~~I~lp~--~v~~Ig~~aF~~c-~l~~i~~~~--~l~~I~~~aF~~ 112 (379)
T 4h09_A 40 PWYKDRD-RISEVRVNS-GITSIGEANFNSCYNMTKVTVAS--TVTSIGDGAFADT-KLQSYTGME--RVKKFGDYVFQG 112 (379)
T ss_dssp TTGGGGG-GCSEEEECT-TEEEECTTTTTTCTTCCEEEECT--TCCEECTTTTTTC-CCCEEEECT--TCCEECTTTTTT
T ss_pred ccccccc-CCEEEEeCC-CccChHHHHhhCCCCCCEEEeCC--cceEechhhhcCC-CCceEECCc--eeeEeccceecc
Confidence 4444445 788888864 35555444 7889999999875 4677777778877 466665543 344443 34444
Q ss_pred CCccCEEEcCCCCCCcccHhhhccCCCCEEEccCCccccccchhhhcCCCCCcEEEEec
Q 040192 124 LISLQHLDLSNTGIAELPKELNALVNLTCLNLEETWRLTVIPRRLISSFSSLHVLRIFG 182 (386)
Q Consensus 124 l~~L~~L~l~~~~i~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~ 182 (386)
.+|+.+.+..+ +..+........+++.+.+..+ +..+...++..+.+++.+.+..
T Consensus 113 -~~L~~i~lp~~-~~~i~~~~F~~~~l~~~~~~~~--v~~i~~~~f~~~~~l~~~~~~~ 167 (379)
T 4h09_A 113 -TDLDDFEFPGA-TTEIGNYIFYNSSVKRIVIPKS--VTTIKDGIGYKAENLEKIEVSS 167 (379)
T ss_dssp -CCCSEEECCTT-CCEECTTTTTTCCCCEEEECTT--CCEECSCTTTTCTTCCEEEECT
T ss_pred -CCcccccCCCc-cccccccccccceeeeeeccce--eeccccchhccccccccccccc
Confidence 36888888654 2322222222234555555433 3444444466666666666544
No 156
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.94 E-value=6.9e-06 Score=67.61 Aligned_cols=88 Identities=13% Similarity=0.099 Sum_probs=45.7
Q ss_pred cCCCcCceecccCCccccc-----cchhhcCCCccCEEEcCCCCCCc-----ccHhhhccCCCCEEEc--cCCccccc--
Q 040192 98 QSMPRLNVLNLSGAIRLYS-----FPLGISKLISLQHLDLSNTGIAE-----LPKELNALVNLTCLNL--EETWRLTV-- 163 (386)
Q Consensus 98 ~~l~~L~~L~l~~~~~~~~-----~~~~~~~l~~L~~L~l~~~~i~~-----l~~~~~~l~~L~~L~l--~~~~~~~~-- 163 (386)
...+.|++|++++| .++. +...+...++|++|++++|.++. +...+...++|++|++ ++|..-..
T Consensus 62 ~~~~~L~~L~Ls~n-~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~ 140 (185)
T 1io0_A 62 KTNTYVKKFSIVGT-RSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVE 140 (185)
T ss_dssp TTCCSCCEEECTTS-CCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHH
T ss_pred HhCCCcCEEECcCC-CCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHH
Confidence 34455555655555 4432 22333444566666666666652 2344455566666666 55532211
Q ss_pred --cchhhhcCCCCCcEEEEeccCCcc
Q 040192 164 --IPRRLISSFSSLHVLRIFGSGYSY 187 (386)
Q Consensus 164 --~~~~~l~~l~~L~~L~l~~~~~~~ 187 (386)
+.. ++...++|++|++++|.+..
T Consensus 141 ~~l~~-~L~~n~~L~~L~L~~n~i~~ 165 (185)
T 1io0_A 141 MEIAN-MLEKNTTLLKFGYHFTQQGP 165 (185)
T ss_dssp HHHHH-HHHHCSSCCEEECCCSSHHH
T ss_pred HHHHH-HHHhCCCcCEEeccCCCCCh
Confidence 112 24455667777776665543
No 157
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.94 E-value=1.2e-05 Score=66.07 Aligned_cols=108 Identities=13% Similarity=0.131 Sum_probs=81.0
Q ss_pred ccccccCccEEEecCC-cccc--cCC----CCCCCCCcEEecccCcCCCcCC----hhhhcCCCcCceecccCCccccc-
Q 040192 49 VRKWEKNVRRLSLMEN-QIEN--LSE----VPTCPYLRTLFLNNNAPLRRID----SGFFQSMPRLNVLNLSGAIRLYS- 116 (386)
Q Consensus 49 ~~~~~~~L~~L~l~~~-~~~~--~~~----~~~~~~L~~L~l~~~~~~~~~~----~~~~~~l~~L~~L~l~~~~~~~~- 116 (386)
+...+ ++++|++++| .+.. +.. ....++|++|++++| .+++.. ...+...+.|++|++++| .++.
T Consensus 32 l~~~~-~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n-~i~~~g~~~l~~~L~~n~~L~~L~L~~N-~i~~~ 108 (185)
T 1io0_A 32 QNNDP-DLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGT-RSNDPVAFALAEMLKVNNTLKSLNVESN-FISGS 108 (185)
T ss_dssp HTTCT-TCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTS-CCCHHHHHHHHHHHHHCSSCCEEECCSS-CCCHH
T ss_pred HhcCC-CCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCC-CCChHHHHHHHHHHHhCCCcCEEECcCC-cCCHH
Confidence 34455 8999999999 8875 221 266889999999999 666432 122456788999999999 7774
Q ss_pred ----cchhhcCCCccCEEEc--CCCCCCc-----ccHhhhccCCCCEEEccCCc
Q 040192 117 ----FPLGISKLISLQHLDL--SNTGIAE-----LPKELNALVNLTCLNLEETW 159 (386)
Q Consensus 117 ----~~~~~~~l~~L~~L~l--~~~~i~~-----l~~~~~~l~~L~~L~l~~~~ 159 (386)
+...+...++|++|++ ++|.++. +...+...++|+.|++++|.
T Consensus 109 g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~ 162 (185)
T 1io0_A 109 GILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQ 162 (185)
T ss_dssp HHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSS
T ss_pred HHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCC
Confidence 3556677889999999 8898873 44556677899999999984
No 158
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=97.75 E-value=0.0038 Score=57.21 Aligned_cols=244 Identities=11% Similarity=0.072 Sum_probs=137.7
Q ss_pred CCCCCCCcEEecccCcCCCcCChhhhcCCCcCceecccCCcccccc-chhhcCCCccCEEEcCCCCCCcccHhhhccCCC
Q 040192 72 VPTCPYLRTLFLNNNAPLRRIDSGFFQSMPRLNVLNLSGAIRLYSF-PLGISKLISLQHLDLSNTGIAELPKELNALVNL 150 (386)
Q Consensus 72 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~-~~~~~~l~~L~~L~l~~~~i~~l~~~~~~l~~L 150 (386)
.....+|+.+.+.. .+..++..+|.+|.+|+.+.+.. .+..+ ..+|.++ +|..+.+.. .+..+........+|
T Consensus 42 ~~~~~~i~~v~ip~--~vt~Ig~~aF~~C~~L~~I~lp~--~v~~Ig~~aF~~c-~l~~i~~~~-~l~~I~~~aF~~~~L 115 (379)
T 4h09_A 42 YKDRDRISEVRVNS--GITSIGEANFNSCYNMTKVTVAS--TVTSIGDGAFADT-KLQSYTGME-RVKKFGDYVFQGTDL 115 (379)
T ss_dssp GGGGGGCSEEEECT--TEEEECTTTTTTCTTCCEEEECT--TCCEECTTTTTTC-CCCEEEECT-TCCEECTTTTTTCCC
T ss_pred cccccCCEEEEeCC--CccChHHHHhhCCCCCCEEEeCC--cceEechhhhcCC-CCceEECCc-eeeEeccceeccCCc
Confidence 35667899999876 57888888899999999999964 35555 3566666 577777654 345554333334589
Q ss_pred CEEEccCCccccccchhhhcCCCCCcEEEEeccCCccc--cCCCcCcccccccc------ee-------ecCCccc----
Q 040192 151 TCLNLEETWRLTVIPRRLISSFSSLHVLRIFGSGYSYS--DGMIGNGEFEQLCG------FR-------RSKSLDV---- 211 (386)
Q Consensus 151 ~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~--~~~~~l~~L~~L~~------~~-------~~~~~~~---- 211 (386)
+.+.+..+ +..+...++..+ +|+.+.+..+ +... ........++.... .. .......
T Consensus 116 ~~i~lp~~--~~~i~~~~F~~~-~l~~~~~~~~-v~~i~~~~f~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (379)
T 4h09_A 116 DDFEFPGA--TTEIGNYIFYNS-SVKRIVIPKS-VTTIKDGIGYKAENLEKIEVSSNNKNYVAENYVLYNKNKTILESYP 191 (379)
T ss_dssp SEEECCTT--CCEECTTTTTTC-CCCEEEECTT-CCEECSCTTTTCTTCCEEEECTTCSSEEEETTEEEETTSSEEEECC
T ss_pred ccccCCCc--cccccccccccc-eeeeeeccce-eeccccchhcccccccccccccccceeecccceecccccceecccc
Confidence 99998765 345555545544 6776666543 2211 12223333333220 00 0000001
Q ss_pred -------------------cccccccCCcEEEeeccCCccchhcccccccccCccccccCcccEEEecCCCCCCccc--c
Q 040192 212 -------------------SALADLKRLNRLKIAECYGLAELKMDYKSVVQNTGQSFVFHSLKKFQISYCKELKDLT--F 270 (386)
Q Consensus 212 -------------------~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~--~ 270 (386)
..+..+.+|+.+.+... ...+....+. .+..|+.+.+..+ ++.+. .
T Consensus 192 ~~~~~~~~~~~~~~~~i~~~~f~~~~~l~~i~~~~~--~~~i~~~~f~---------~~~~L~~i~lp~~--v~~I~~~a 258 (379)
T 4h09_A 192 AAKTGTEFTIPSTVKTVTAYGFSYGKNLKKITITSG--VTTLGDGAFY---------GMKALDEIAIPKN--VTSIGSFL 258 (379)
T ss_dssp TTCCCSEEECCTTCCEECTTTTTTCSSCSEEECCTT--CCEECTTTTT---------TCSSCCEEEECTT--CCEECTTT
T ss_pred ccccccccccccceeEEeecccccccccceeeeccc--eeEEcccccc---------CCccceEEEcCCC--ccEeCccc
Confidence 11122334444444322 1111122222 4667777776553 44432 2
Q ss_pred ccCCCCCcEEeecCCCccchhhccCcccccCCCCcccccceeeeccccccccccC-CCcCCCCccEEeecCcccCcCCCC
Q 040192 271 LIFAPNLKSIEVDSCYALEEIVSDVPEVMMGNLNPFAQFHFLCFSYLPNLKSIYR-KPLPFPHLKEMKVIHCLKLKKLPL 349 (386)
Q Consensus 271 l~~l~~L~~L~l~~c~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~-~~~~~~~L~~L~i~~c~~L~~l~~ 349 (386)
...+.+|+.+.+.. .++.+.. ..+..+++|+.+.+.+. .++.+.. ....|.+|+.+.|.+ +++.|..
T Consensus 259 F~~~~~l~~i~l~~--~i~~i~~-------~aF~~c~~L~~i~l~~~-~i~~I~~~aF~~c~~L~~i~lp~--~l~~I~~ 326 (379)
T 4h09_A 259 LQNCTALKTLNFYA--KVKTVPY-------LLCSGCSNLTKVVMDNS-AIETLEPRVFMDCVKLSSVTLPT--ALKTIQV 326 (379)
T ss_dssp TTTCTTCCEEEECC--CCSEECT-------TTTTTCTTCCEEEECCT-TCCEECTTTTTTCTTCCEEECCT--TCCEECT
T ss_pred cceeehhccccccc--cceeccc-------ccccccccccccccccc-ccceehhhhhcCCCCCCEEEcCc--cccEEHH
Confidence 45567788888754 2555544 47788899999998765 5666543 355688899988853 3445444
Q ss_pred C
Q 040192 350 D 350 (386)
Q Consensus 350 ~ 350 (386)
.
T Consensus 327 ~ 327 (379)
T 4h09_A 327 Y 327 (379)
T ss_dssp T
T ss_pred H
Confidence 3
No 159
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.71 E-value=4.9e-05 Score=66.01 Aligned_cols=60 Identities=32% Similarity=0.387 Sum_probs=25.8
Q ss_pred CCCcCceecccCCcccccc---chhhcCCCccCEEEcCCCCCCcccHhhhccC--CCCEEEccCCcc
Q 040192 99 SMPRLNVLNLSGAIRLYSF---PLGISKLISLQHLDLSNTGIAELPKELNALV--NLTCLNLEETWR 160 (386)
Q Consensus 99 ~l~~L~~L~l~~~~~~~~~---~~~~~~l~~L~~L~l~~~~i~~l~~~~~~l~--~L~~L~l~~~~~ 160 (386)
.+++|+.|++++| .+..+ +..+..+++|+.|++++|.++.+. .+..+. +|+.|++++|+.
T Consensus 168 ~l~~L~~L~Ls~N-~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~-~l~~l~~l~L~~L~L~~Npl 232 (267)
T 3rw6_A 168 NIPELLSLNLSNN-RLYRLDDMSSIVQKAPNLKILNLSGNELKSER-ELDKIKGLKLEELWLDGNSL 232 (267)
T ss_dssp HCTTCCEEECTTS-CCCCCGGGTTHHHHSTTCCEEECTTSCCCSGG-GGGGGTTSCCSEEECTTSTT
T ss_pred hCCCCCEEECCCC-CCCCCccchhHHhhCCCCCEEECCCCccCCch-hhhhcccCCcceEEccCCcC
Confidence 3444555555544 44332 223334455555555555444331 122222 445555555433
No 160
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.70 E-value=1.3e-05 Score=69.56 Aligned_cols=79 Identities=32% Similarity=0.427 Sum_probs=60.2
Q ss_pred CCCCCCcEEecccCcCCCcCCh--hhhcCCCcCceecccCCccccccchhhcCCC--ccCEEEcCCCCCCc-cc------
Q 040192 73 PTCPYLRTLFLNNNAPLRRIDS--GFFQSMPRLNVLNLSGAIRLYSFPLGISKLI--SLQHLDLSNTGIAE-LP------ 141 (386)
Q Consensus 73 ~~~~~L~~L~l~~~~~~~~~~~--~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~--~L~~L~l~~~~i~~-l~------ 141 (386)
..+++|++|++++| .+..++. ..+..+++|++|++++| .+..+. .+..+. +|+.|++++|.++. +|
T Consensus 167 ~~l~~L~~L~Ls~N-~l~~l~~l~~~~~~l~~L~~L~Ls~N-~i~~~~-~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~ 243 (267)
T 3rw6_A 167 ENIPELLSLNLSNN-RLYRLDDMSSIVQKAPNLKILNLSGN-ELKSER-ELDKIKGLKLEELWLDGNSLCDTFRDQSTYI 243 (267)
T ss_dssp HHCTTCCEEECTTS-CCCCCGGGTTHHHHSTTCCEEECTTS-CCCSGG-GGGGGTTSCCSEEECTTSTTGGGCSSHHHHH
T ss_pred hhCCCCCEEECCCC-CCCCCccchhHHhhCCCCCEEECCCC-ccCCch-hhhhcccCCcceEEccCCcCccccCcchhHH
Confidence 56899999999999 7766542 33678999999999999 887652 344444 89999999999873 43
Q ss_pred -HhhhccCCCCEEE
Q 040192 142 -KELNALVNLTCLN 154 (386)
Q Consensus 142 -~~~~~l~~L~~L~ 154 (386)
..+..+++|+.|+
T Consensus 244 ~~il~~~P~L~~LD 257 (267)
T 3rw6_A 244 SAIRERFPKLLRLD 257 (267)
T ss_dssp HHHHHHCTTCCEES
T ss_pred HHHHHHCcccCeEC
Confidence 2456778888776
No 161
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=95.40 E-value=0.024 Score=43.21 Aligned_cols=54 Identities=24% Similarity=0.416 Sum_probs=28.5
Q ss_pred EEEcCCCCCC--cccHhhhccCCCCEEEccCCccccccchhhhcCCCCCcEEEEeccCC
Q 040192 129 HLDLSNTGIA--ELPKELNALVNLTCLNLEETWRLTVIPRRLISSFSSLHVLRIFGSGY 185 (386)
Q Consensus 129 ~L~l~~~~i~--~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~ 185 (386)
.++-+++.++ .+|..+ -.+|+.|+|++| .+..++..++..+++|+.|++.+|.+
T Consensus 12 ~v~Cs~~~L~~~~vP~~l--p~~l~~L~Ls~N-~l~~l~~~~f~~l~~L~~L~L~~NP~ 67 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAF--PVDTTELVLTGN-NLTALPPGLLDALPALRTAHLGANPW 67 (130)
T ss_dssp EEECCSSCCCTTTSCSCC--CTTCSEEECTTS-CCSSCCTTTGGGCTTCCEEECCSSCC
T ss_pred EEEeCCCCCccccCCCCC--CcCCCEEECCCC-cCCccChhhhhhccccCEEEecCCCe
Confidence 4444555554 555332 234566666665 44555555555666666666665543
No 162
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=95.25 E-value=0.03 Score=42.60 Aligned_cols=52 Identities=25% Similarity=0.330 Sum_probs=34.7
Q ss_pred ccEEEEcCCCCC--CCCcccccccCccEEEecCCcccccCCC--CCCCCCcEEecccC
Q 040192 33 EEHLVYAGAGLS--ETPDVRKWEKNVRRLSLMENQIENLSEV--PTCPYLRTLFLNNN 86 (386)
Q Consensus 33 ~~~l~~~~~~l~--~~p~~~~~~~~L~~L~l~~~~~~~~~~~--~~~~~L~~L~l~~~ 86 (386)
...+.+++.++. .+|. .++.++++|+|++|.++.++.. ..+++|+.|++.+|
T Consensus 10 ~~~v~Cs~~~L~~~~vP~--~lp~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N 65 (130)
T 3rfe_A 10 GTLVDCGRRGLTWASLPT--AFPVDTTELVLTGNNLTALPPGLLDALPALRTAHLGAN 65 (130)
T ss_dssp TTEEECCSSCCCTTTSCS--CCCTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSS
T ss_pred CCEEEeCCCCCccccCCC--CCCcCCCEEECCCCcCCccChhhhhhccccCEEEecCC
Confidence 347888888887 7774 2444677777777777766554 55666666666666
No 163
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=95.07 E-value=0.031 Score=45.81 Aligned_cols=110 Identities=13% Similarity=0.054 Sum_probs=60.3
Q ss_pred CCCCCCcEEecccCcCCCcCC----hhhhcCCCcCceecccCCccccc-----cchhhcCCCccCEEEcCCCCCCc----
Q 040192 73 PTCPYLRTLFLNNNAPLRRID----SGFFQSMPRLNVLNLSGAIRLYS-----FPLGISKLISLQHLDLSNTGIAE---- 139 (386)
Q Consensus 73 ~~~~~L~~L~l~~~~~~~~~~----~~~~~~l~~L~~L~l~~~~~~~~-----~~~~~~~l~~L~~L~l~~~~i~~---- 139 (386)
..-+.|+.|+++++..+++.. ...+..-..|+.|++++| .+++ +...+..-+.|+.|+++.|.++.
T Consensus 38 ~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n-~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ 116 (197)
T 1pgv_A 38 EDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANT-AISDSEARGLIELIETSPSLRVLNVESNFLTPELLA 116 (197)
T ss_dssp TTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTS-CCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHH
T ss_pred hcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCC-CCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHH
Confidence 344566666666532333211 122445566777777777 5552 23334445667888888777762
Q ss_pred -ccHhhhccCCCCEEEccCCcc--ccc-----cchhhhcCCCCCcEEEEeccC
Q 040192 140 -LPKELNALVNLTCLNLEETWR--LTV-----IPRRLISSFSSLHVLRIFGSG 184 (386)
Q Consensus 140 -l~~~~~~l~~L~~L~l~~~~~--~~~-----~~~~~l~~l~~L~~L~l~~~~ 184 (386)
+-..+..-+.|+.|+++++.. ++. +.. ++..-++|+.|+++.+.
T Consensus 117 ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~-aL~~N~tL~~L~l~~~~ 168 (197)
T 1pgv_A 117 RLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMM-AIEENESLLRVGISFAS 168 (197)
T ss_dssp HHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHH-HHHHCSSCCEEECCCCC
T ss_pred HHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHH-HHHhCCCcCeEeccCCC
Confidence 223344455688888875421 221 112 24556778888876553
No 164
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=94.26 E-value=0.061 Score=44.01 Aligned_cols=102 Identities=11% Similarity=0.202 Sum_probs=72.3
Q ss_pred CccEEEecCC-cccc--cC----CCCCCCCCcEEecccCcCCCcCCh----hhhcCCCcCceecccCCccccc-----cc
Q 040192 55 NVRRLSLMEN-QIEN--LS----EVPTCPYLRTLFLNNNAPLRRIDS----GFFQSMPRLNVLNLSGAIRLYS-----FP 118 (386)
Q Consensus 55 ~L~~L~l~~~-~~~~--~~----~~~~~~~L~~L~l~~~~~~~~~~~----~~~~~l~~L~~L~l~~~~~~~~-----~~ 118 (386)
.|++|+++++ .+.+ .. ....-+.|+.|++++| .+++... ..+..-+.|+.|++++| .++. +.
T Consensus 42 ~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n-~igd~ga~alA~aL~~N~tL~~L~L~~N-~Ig~~Ga~ala 119 (197)
T 1pgv_A 42 DLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANT-AISDSEARGLIELIETSPSLRVLNVESN-FLTPELLARLL 119 (197)
T ss_dssp SCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTS-CCBHHHHTTHHHHHHHCSSCCEEECCSS-BCCHHHHHHHH
T ss_pred CccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCC-CCChHHHHHHHHHHhcCCccCeEecCCC-cCCHHHHHHHH
Confidence 7999999985 7664 11 1266779999999999 6764332 23456688999999999 7773 34
Q ss_pred hhhcCCCccCEEEcCCCC---CC-----cccHhhhccCCCCEEEccCC
Q 040192 119 LGISKLISLQHLDLSNTG---IA-----ELPKELNALVNLTCLNLEET 158 (386)
Q Consensus 119 ~~~~~l~~L~~L~l~~~~---i~-----~l~~~~~~l~~L~~L~l~~~ 158 (386)
.++..-+.|+.|+++++. +. .+-..+..-+.|+.|+++.+
T Consensus 120 ~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~ 167 (197)
T 1pgv_A 120 RSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFA 167 (197)
T ss_dssp HHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCC
T ss_pred HHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCC
Confidence 455556779999998753 33 12344556678999999766
No 165
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=58.40 E-value=9.5 Score=26.98 Aligned_cols=37 Identities=19% Similarity=0.327 Sum_probs=23.2
Q ss_pred CCCCCCcEEecccCcCCCcCChhhhcCCCcCceecccCC
Q 040192 73 PTCPYLRTLFLNNNAPLRRIDSGFFQSMPRLNVLNLSGA 111 (386)
Q Consensus 73 ~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~ 111 (386)
..|..|+.+.+.. .+..+...+|.+|.+|+.+.+.+.
T Consensus 17 ~~c~~L~~i~iP~--~v~~Ig~~aF~~C~~L~~i~~~~~ 53 (100)
T 2lz0_A 17 AGNTVIREITVQP--NIGLLYDGMFSGCTALEKLILTGE 53 (100)
T ss_dssp TTCTTCCCEEECT--TSSCCCTTSSTTCTTCCCEEECCS
T ss_pred cCCCCCcEEEcCC--chheEcHHHHhccCCccEEEEcCC
Confidence 5666677666665 355566655666777766666544
No 166
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=50.28 E-value=14 Score=25.99 Aligned_cols=39 Identities=10% Similarity=0.193 Sum_probs=25.2
Q ss_pred hhhccCCCCEEEccCCccccccchhhhcCCCCCcEEEEecc
Q 040192 143 ELNALVNLTCLNLEETWRLTVIPRRLISSFSSLHVLRIFGS 183 (386)
Q Consensus 143 ~~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~~ 183 (386)
.+..|.+|+.+.+..+ +..+...++..|.+|+.+.+.+.
T Consensus 15 aF~~c~~L~~i~iP~~--v~~Ig~~aF~~C~~L~~i~~~~~ 53 (100)
T 2lz0_A 15 LFAGNTVIREITVQPN--IGLLYDGMFSGCTALEKLILTGE 53 (100)
T ss_dssp TTTTCTTCCCEEECTT--SSCCCTTSSTTCTTCCCEEECCS
T ss_pred HhcCCCCCcEEEcCCc--hheEcHHHHhccCCccEEEEcCC
Confidence 4556677777776654 45566556777777777777653
Done!