Query 040193
Match_columns 80
No_of_seqs 101 out of 108
Neff 6.2
Searched_HMMs 46136
Date Fri Mar 29 06:01:04 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040193.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/040193hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF07333 SLR1-BP: S locus-rela 99.7 2.8E-17 6.1E-22 95.0 4.1 54 23-80 1-58 (58)
2 PF10868 DUF2667: Protein of u 98.0 1E-05 2.2E-10 50.9 3.7 73 3-79 5-80 (90)
3 PF00451 Toxin_2: Scorpion sho 90.6 0.67 1.5E-05 23.8 3.6 29 41-77 3-32 (32)
4 PF07127 Nodulin_late: Late no 90.4 0.35 7.7E-06 27.1 2.7 25 1-27 1-25 (54)
5 PF00304 Gamma-thionin: Gamma- 88.9 0.75 1.6E-05 25.1 3.2 35 39-80 12-47 (47)
6 PF12606 RELT: Tumour necrosis 88.6 0.74 1.6E-05 25.9 3.1 34 1-36 1-34 (50)
7 PF11415 Toxin_37: Antifungal 87.5 1.2 2.7E-05 23.3 3.3 33 41-79 1-33 (35)
8 PF15240 Pro-rich: Proline-ric 86.8 0.34 7.5E-06 33.9 1.2 19 11-29 1-19 (179)
9 PF02402 Lysis_col: Lysis prot 74.9 1.5 3.2E-05 24.3 0.8 18 1-18 1-18 (46)
10 smart00505 Knot1 Knottins. Kno 71.1 4.1 8.9E-05 21.3 2.0 33 39-78 11-45 (45)
11 PHA03072 putative viral membra 66.2 5.8 0.00013 28.0 2.4 20 2-21 27-46 (190)
12 PF03356 Pox_LP_H2: Viral late 63.0 6.9 0.00015 27.6 2.3 20 2-21 27-46 (189)
13 PF11714 Inhibitor_I53: Thromb 62.3 8.8 0.00019 23.3 2.3 20 7-26 4-23 (78)
14 PF13956 Ibs_toxin: Toxin Ibs, 59.7 5.4 0.00012 18.1 0.8 10 8-17 6-15 (19)
15 PHA02291 hypothetical protein 58.2 12 0.00026 24.6 2.6 17 1-17 1-18 (132)
16 PF04202 Mfp-3: Foot protein 3 57.4 9 0.00019 23.0 1.8 15 1-15 1-15 (71)
17 PHA03255 BDLF3; Provisional 56.7 10 0.00022 26.9 2.2 15 8-22 193-208 (234)
18 cd00107 Knot1 The "knottin" fo 56.2 13 0.00029 18.4 2.1 30 41-77 3-33 (33)
19 COG2991 Uncharacterized protei 55.9 10 0.00023 23.0 1.9 18 31-51 31-52 (77)
20 PF05294 Toxin_5: Scorpion sho 54.0 15 0.00034 18.8 2.1 20 44-76 13-32 (32)
21 PF10828 DUF2570: Protein of u 52.1 20 0.00044 22.6 2.9 21 1-21 1-21 (110)
22 PF01097 Defensin_2: Arthropod 52.1 33 0.00071 17.6 3.2 27 43-77 8-34 (34)
23 PF14147 Spore_YhaL: Sporulati 50.8 20 0.00043 20.4 2.4 20 7-27 5-24 (52)
24 PLN00214 putative protein; Pro 49.1 7.8 0.00017 25.4 0.6 28 1-28 1-32 (115)
25 CHL00020 psbN photosystem II p 47.9 23 0.00049 19.4 2.3 18 1-18 1-18 (43)
26 PF03929 PepSY_TM: PepSY-assoc 45.2 33 0.00071 16.7 2.4 13 7-19 12-24 (27)
27 TIGR01606 holin_BlyA holin, Bl 42.2 38 0.00083 19.9 2.8 20 2-21 16-35 (63)
28 PRK13183 psbN photosystem II r 41.2 36 0.00078 18.8 2.4 18 1-18 4-21 (46)
29 COG3771 Predicted membrane pro 40.7 27 0.00059 22.1 2.1 14 8-21 3-16 (97)
30 PF08027 Albumin_I: Albumin I; 40.5 12 0.00025 24.7 0.5 30 32-66 25-54 (120)
31 KOG4063 Major epididymal secre 37.1 45 0.00098 23.0 2.9 40 3-46 2-50 (158)
32 PF10690 Myticin-prepro: Mytic 35.9 42 0.0009 21.3 2.4 32 12-54 7-38 (98)
33 PHA02706 hypothetical protein; 33.1 53 0.0011 18.6 2.3 16 6-21 7-22 (58)
34 PF12729 4HB_MCP_1: Four helix 32.7 52 0.0011 20.3 2.6 14 3-16 7-20 (181)
35 TIGR02209 ftsL_broad cell divi 31.6 63 0.0014 18.7 2.7 6 1-6 1-6 (85)
36 COG5487 Small integral membran 31.1 60 0.0013 18.5 2.3 15 2-17 31-45 (54)
37 PF05102 Holin_BlyA: holin, Bl 30.8 79 0.0017 18.5 2.9 19 3-21 17-35 (61)
38 PF08120 Toxin_32: Tamulustoxi 30.3 7.8 0.00017 19.9 -1.3 33 41-77 2-34 (35)
39 PF02060 ISK_Channel: Slow vol 30.3 45 0.00098 22.2 2.0 15 5-19 43-57 (129)
40 PF09771 Tmemb_18A: Transmembr 29.2 36 0.00078 22.5 1.4 20 24-43 86-111 (125)
41 PF10794 DUF2606: Protein of u 29.2 43 0.00092 22.3 1.7 25 3-27 13-37 (131)
42 PF11912 DUF3430: Protein of u 29.1 52 0.0011 22.2 2.2 13 3-15 2-14 (212)
43 PF13172 PepSY_TM_1: PepSY-ass 27.8 87 0.0019 15.5 2.4 14 8-21 17-30 (34)
44 TIGR00247 conserved hypothetic 27.7 68 0.0015 24.0 2.8 16 1-16 1-16 (342)
45 PRK13664 hypothetical protein; 27.7 71 0.0015 18.6 2.3 15 11-25 12-26 (62)
46 PF00008 EGF: EGF-like domain 26.5 50 0.0011 16.1 1.4 18 58-77 8-25 (32)
47 PF11395 DUF2873: Protein of u 25.7 1.2E+02 0.0026 16.2 3.0 10 25-34 33-42 (43)
48 KOG3384 Selenoprotein [General 25.5 73 0.0016 21.7 2.4 32 1-35 1-32 (154)
49 PRK09039 hypothetical protein; 25.2 73 0.0016 24.0 2.6 11 11-21 29-39 (343)
50 PF10731 Anophelin: Thrombin i 24.8 72 0.0016 18.8 2.0 15 1-15 1-16 (65)
51 PHA00645 hypothetical protein 24.7 49 0.0011 21.6 1.4 28 1-28 38-65 (125)
52 PRK12750 cpxP periplasmic repr 24.5 74 0.0016 21.7 2.3 21 1-21 3-23 (170)
53 PF11044 TMEMspv1-c74-12: Plec 24.2 1.1E+02 0.0023 17.0 2.5 13 7-19 6-18 (49)
54 PF08999 SP_C-Propep: Surfacta 23.5 1.1E+02 0.0025 19.0 2.8 15 15-29 50-64 (93)
55 PF13706 PepSY_TM_3: PepSY-ass 22.9 1.2E+02 0.0026 15.3 2.6 14 8-21 16-29 (37)
56 CHL00031 psbT photosystem II p 22.8 1.3E+02 0.0027 15.5 2.5 13 6-18 4-16 (33)
57 PRK11875 psbT photosystem II r 22.8 1.2E+02 0.0027 15.4 2.7 13 6-18 4-16 (31)
58 PF02468 PsbN: Photosystem II 22.1 80 0.0017 17.2 1.7 15 4-18 4-18 (43)
59 PHA03066 Hypothetical protein; 22.0 98 0.0021 20.1 2.4 18 1-18 1-18 (110)
60 KOG4455 Uncharacterized conser 21.9 1.2E+02 0.0027 19.6 2.8 21 7-29 53-73 (110)
61 PF02495 7kD_coat: 7kD viral c 21.6 1.6E+02 0.0035 16.3 3.1 8 31-38 25-32 (59)
62 PF04068 RLI: Possible Fer4-li 21.2 22 0.00049 18.2 -0.6 16 37-52 6-23 (35)
63 PLN03207 stomagen; Provisional 20.9 1.3E+02 0.0027 19.5 2.7 10 11-20 19-28 (113)
64 PF14865 Macin: Macin; PDB: 2K 20.8 1.3E+02 0.0029 17.4 2.6 21 44-67 22-42 (59)
65 PF13980 UPF0370: Uncharacteri 20.3 1.1E+02 0.0024 17.9 2.1 15 11-25 11-25 (63)
66 KOG3950 Gamma/delta sarcoglyca 20.3 1E+02 0.0022 23.1 2.4 12 6-17 36-47 (292)
67 COG3354 FlaG Putative archaeal 20.2 1.4E+02 0.003 20.5 2.9 18 4-21 6-23 (154)
68 PF15048 OSTbeta: Organic solu 20.2 1.4E+02 0.003 19.8 2.9 18 4-21 37-54 (125)
69 TIGR03063 srtB_target sortase 20.1 1.4E+02 0.003 14.9 2.4 12 7-18 10-21 (29)
70 KOG1225 Teneurin-1 and related 20.1 33 0.00072 27.7 -0.1 27 31-64 298-325 (525)
No 1
>PF07333 SLR1-BP: S locus-related glycoprotein 1 binding pollen coat protein (SLR1-BP); InterPro: IPR010851 This entry consists of a number of cysteine rich SLR1 binding pollen coat like proteins. Adhesion of pollen grains to the stigmatic surface is a critical step during sexual reproduction in plants. In Brassica, S locus-related glycoprotein 1 (SLR1), a stigma-specific protein belonging to the S gene family of proteins, has been shown to be involved in this step. SLR1-BP specifically binds SLR1 with high affinity. The SLR1-BP gene is specifically expressed in pollen at late stages of development and is a member of the class A pollen coat protein (PCP) family, which includes PCP-A1, an SLG (S locus glycoprotein)-binding protein []. This entry also includes defensin-like proteins. The function of these proteins is uncharacterised.
Probab=99.69 E-value=2.8e-17 Score=94.98 Aligned_cols=54 Identities=33% Similarity=0.837 Sum_probs=46.9
Q ss_pred hhhhcccccccccccc---ccCChhhHHHHhHhhccCCCee-eEEeeCCCCCCcceeEeecC
Q 040193 23 VRRVDAQVKRCEEKSN---PNCSLEDCRAKCINKYINKRGF-GECIENGAHTGYDCYCFWDC 80 (80)
Q Consensus 23 ~~~~qg~~~~C~~~i~---~~C~~~~C~~~C~~k~~~~~G~-G~C~~~~~~~~~~C~C~Y~C 80 (80)
|+|+|||+.+|+++|+ ++|+.++|+++|.++| +|. |+|+++ ++++.+|+|+|+|
T Consensus 1 ~~etqg~~~~C~~~l~~~~~~C~~~~C~~~C~~k~---~g~~G~C~~~-~~~~~~C~C~Y~C 58 (58)
T PF07333_consen 1 VKETQGQERQCHEVLPNKPGPCDPQDCRSLCKKKY---KGGVGTCIPK-PKGPKQCLCTYNC 58 (58)
T ss_pred CCcccCCCCcCceeCccCCCCCChHHHHHHHHHHc---CCCceEeccC-CCCCCeeEEEeeC
Confidence 5899999556999998 6899999999999999 665 999993 3468899999998
No 2
>PF10868 DUF2667: Protein of unknown function (DUF2667); InterPro: IPR022618 This family of proteins with unknown function appears to be restricted to Arabidopsis thaliana.
Probab=97.97 E-value=1e-05 Score=50.87 Aligned_cols=73 Identities=29% Similarity=0.506 Sum_probs=46.6
Q ss_pred hhhHHHHHHHHHHHHHHHhhhhhhccccccccccccccCCh--hhHHHHhHhhccCCCeeeEEeeCC-CCCCcceeEeec
Q 040193 3 KLSFNNIFVFLLILSAALMAVRRVDAQVKRCEEKSNPNCSL--EDCRAKCINKYINKRGFGECIENG-AHTGYDCYCFWD 79 (80)
Q Consensus 3 K~s~~~~~i~~lvls~~~~~~~~~qg~~~~C~~~i~~~C~~--~~C~~~C~~k~~~~~G~G~C~~~~-~~~~~~C~C~Y~ 79 (80)
|+|..+|+ +++.+|+++..-.|..|+ ..|..-+ ..|+. .+|+..|.+-.++ ..-|.|.+.. +++...|.|-|+
T Consensus 5 k~st~~il-vvvclsiLLisp~eV~G~-~~cd~~~-G~C~~~~~~C~~~Ck~~~~~-y~GG~C~~~~~~~~~~~C~Cc~~ 80 (90)
T PF10868_consen 5 KLSTFVIL-VVVCLSILLISPTEVDGR-LKCDSPF-GACTPFSSDCNEPCKKFGSN-YYGGQCVPVGPPPGDGVCYCCYY 80 (90)
T ss_pred EEEeeehh-HHHHHHHHccccceeCCe-EccCccc-ccCCchHHHHHHHHHhhccC-CCCceeccCCCCCCCcEEEEecc
Confidence 66766665 455557655312346776 4566322 67887 7899999963321 2339999954 346678999885
No 3
>PF00451 Toxin_2: Scorpion short toxin, BmKK2; InterPro: IPR001947 Scorpion venoms contain a variety of peptides toxic to mammals, insects and crustaceans. Among these peptides there is a family of short toxins (30 to 40 residues) [, ] including charybdotoxin, kaliotoxin [], noxiustoxin [] and iberiotoxin [, ]. Charybdotoxin consists of a single polypeptide chain and is a potent, selective inhibitor of calcium-activated potassium channels in pituitary and aortic smooth muscle cells - the toxin reversibly blocks channel activity by interacting at the external pore of the channel protein[]. The tertiary structure of the toxins comprises a 3-stranded beta-sheet and a short helix, and is stabilised by a number of disulphide bridges [] as shown in the following schematic representation: +---------------------+ | | | | xxxxxxxCxxxxxCxxxCxxxxxxxxxxxCxxxxCxCxxx | | | | | +----------------+ | +----------------------+ 'C': conserved cysteine involved in a disulphide bond. ; GO: 0008200 ion channel inhibitor activity, 0009405 pathogenesis, 0005576 extracellular region; PDB: 1TSK_A 2PTA_A 1BIG_A 3ODV_A 2UVS_A 2KTX_A 1XSW_A 1KTX_A 1WMT_A 1PNH_A ....
Probab=90.64 E-value=0.67 Score=23.81 Aligned_cols=29 Identities=28% Similarity=0.840 Sum_probs=23.4
Q ss_pred CC-hhhHHHHhHhhccCCCeeeEEeeCCCCCCcceeEe
Q 040193 41 CS-LEDCRAKCINKYINKRGFGECIENGAHTGYDCYCF 77 (80)
Q Consensus 41 C~-~~~C~~~C~~k~~~~~G~G~C~~~~~~~~~~C~C~ 77 (80)
|. +.+|..-|.+.+ +.-.|.|++. .|.|+
T Consensus 3 C~~s~~C~~~Ck~~~--g~~~gKCmN~------kC~Cy 32 (32)
T PF00451_consen 3 CTGSKDCWPPCKKAT--GCLNGKCMNG------KCKCY 32 (32)
T ss_dssp TSSHHHHHHHHHHHT--SSSEEEEETT------EEEEE
T ss_pred cCCchHHHHHhhhhh--CCCCCCccCC------CceeC
Confidence 66 478999999998 4567999987 68885
No 4
>PF07127 Nodulin_late: Late nodulin protein; InterPro: IPR009810 This family consists of several plant specific late nodulin sequences which are homologous to the Pisum sativum (Garden pea) ENOD3 protein. ENOD3 is expressed in the late stages of root nodule formation and contains two pairs of cysteine residues toward the proteins C terminus which may be involved in metal-binding [].; GO: 0046872 metal ion binding, 0009878 nodule morphogenesis
Probab=90.38 E-value=0.35 Score=27.07 Aligned_cols=25 Identities=36% Similarity=0.472 Sum_probs=14.9
Q ss_pred CchhhHHHHHHHHHHHHHHHhhhhhhc
Q 040193 1 MAKLSFNNIFVFLLILSAALMAVRRVD 27 (80)
Q Consensus 1 MaK~s~~~~~i~~lvls~~~~~~~~~q 27 (80)
|||+.-.. ++++|+||.|++ +...+
T Consensus 1 Ma~ilKFv-Y~mIiflslflv-~~~~~ 25 (54)
T PF07127_consen 1 MAKILKFV-YAMIIFLSLFLV-VTNVD 25 (54)
T ss_pred CccchhhH-HHHHHHHHHHHh-hcccC
Confidence 88776643 444566677787 34443
No 5
>PF00304 Gamma-thionin: Gamma-thionin family; InterPro: IPR008176 The following small plant proteins are evolutionary related: Gamma-thionins from Triticum aestivum (Wheat) endosperm (gamma-purothionins) and gamma-hordothionins from Hordeum vulgare(Barley) are toxic to animal cells and inhibit protein synthesis in cell free systems []. A flower-specific thionin (FST) from Nicotiana tabacum (Common Tobacco)[]. Antifungal proteins (AFP) from the seeds of Brassicaceae species such as radish, mustard, turnip and Arabidopsis thaliana (Thale Cress)[]. Inhibitors of insect alpha-amylases from sorghum []. Probable protease inhibitor P322 from Solanum tuberosum (Potato). A germination-related protein from Vigna unguiculata (Cowpea) []. Anther-specific protein SF18 from sunflower. SF18 is a protein that contains a gamma-thionin domain at its N terminus and a proline-rich C-terminal domain. Glycine max (Soybean) sulphur-rich protein SE60 []. Vicia faba (Broad bean) antibacterial peptides fabatin-1 and -2. In their mature form, these proteins generally consist of about 45 to 50 amino-acid residues. As shown in the following schematic representation, these peptides contain eight conserved cysteines involved in disulphide bonds. +-------------------------------------------+ | +-------------------+ | | | | | xxCxxxxxxxxxxCxxxxxCxxxCxxxxxxxxxCxxxxxxCxCxxxC | | | | +---|----------------+ | +------------------+ 'C': conserved cysteine involved in a disulphide bond. The folded structure of Gamma-purothionin is characterised by a well-defined 3-stranded anti-parallel beta-sheet and a short alpha-helix []. Three disulphide bridges are located in the hydrophobic core between the helix and sheet, forming a cysteine-stabilised alpha-helical motif. This structure differs from that of the plant alpha- and beta- thionins, but is analogous to scorpion toxins and insect defensins.; GO: 0006952 defense response; PDB: 4AB0_A 4AAZ_B 1N4N_A 2KPY_A 1JKZ_A 1AYJ_A 1GPT_A 1BK8_A 2GL1_A 1GPS_A ....
Probab=88.91 E-value=0.75 Score=25.08 Aligned_cols=35 Identities=29% Similarity=0.599 Sum_probs=25.9
Q ss_pred ccCCh-hhHHHHhHhhccCCCeeeEEeeCCCCCCcceeEeecC
Q 040193 39 PNCSL-EDCRAKCINKYINKRGFGECIENGAHTGYDCYCFWDC 80 (80)
Q Consensus 39 ~~C~~-~~C~~~C~~k~~~~~G~G~C~~~~~~~~~~C~C~Y~C 80 (80)
..|-. +.|+..|.++- ..-|.|... ...|+|+++|
T Consensus 12 G~C~~~~~C~~~C~~eg---~~~G~C~~~----~~~C~C~~~C 47 (47)
T PF00304_consen 12 GLCFSDSNCANVCINEG---FTGGKCSGP----LRRCFCTKPC 47 (47)
T ss_dssp SS-SSHHHHHHHHHHCT---SSEEEEETT----TTEEEEEEEE
T ss_pred eECCCcchhhHHhccCC---CCCCEeCCC----CceEEEeCcC
Confidence 45754 67999999876 457999963 2479999987
No 6
>PF12606 RELT: Tumour necrosis factor receptor superfamily member 19; InterPro: IPR022248 The members of tumor necrosis factor receptor (TNFR) superfamily have been designated as the "guardians of the immune system" due to their roles in immune cell proliferation, differentiation, activation, and death (apoptosis). RELT (receptor expressed in lymphoid tissues) is a member of the TNFR superfamily. The messenger RNA of RELT is especially abundant in hematologic tissues such as spleen, lymph node, and peripheral blood leukocytes as well as in leukemias and lymphomas. RELT is able to activate the NF-kappaB pathway and selectively binds tumor necrosis factor receptor-associated factor 1 []. RELT like proteins 1 and 2 (RELL1 and RELL2) are two RELT homologues that bind to RELT. The expression of RELL1 at the mRNA level is ubiquitous, whereas expression of RELL2 mRNA is more restricted to particular tissues [].
Probab=88.64 E-value=0.74 Score=25.93 Aligned_cols=34 Identities=9% Similarity=0.168 Sum_probs=20.9
Q ss_pred CchhhHHHHHHHHHHHHHHHhhhhhhcccccccccc
Q 040193 1 MAKLSFNNIFVFLLILSAALMAVRRVDAQVKRCEEK 36 (80)
Q Consensus 1 MaK~s~~~~~i~~lvls~~~~~~~~~qg~~~~C~~~ 36 (80)
|..+....||+++.||++.+..+.++.|. +|+.-
T Consensus 1 y~~~~iV~i~iv~~lLg~~I~~~~K~ygY--kht~d 34 (50)
T PF12606_consen 1 YIAFLIVSIFIVMGLLGLSICTTLKAYGY--KHTVD 34 (50)
T ss_pred CeehHHHHHHHHHHHHHHHHHHHhhcccc--ccccC
Confidence 44455566666677776655546777775 66543
No 7
>PF11415 Toxin_37: Antifungal peptide termicin; InterPro: IPR024723 Termicin is a cysteine-rich antifungal peptide, which also exhibits weak antibacterial activity. The global fold of termicin consists of an alpha-helical segment and a two-stranded antiparallel beta-sheet forming a cysteine stabilised alphabeta motif that is also found in antibacterial and antifungal defensins from insects and from plants. The antifungal properties of termicin may be related to its marked hydrophobicity and its amphipatic structure compared to the antibacterial defensins [].; PDB: 1MM0_A.
Probab=87.54 E-value=1.2 Score=23.34 Aligned_cols=33 Identities=21% Similarity=0.538 Sum_probs=20.5
Q ss_pred CChhhHHHHhHhhccCCCeeeEEeeCCCCCCcceeEeec
Q 040193 41 CSLEDCRAKCINKYINKRGFGECIENGAHTGYDCYCFWD 79 (80)
Q Consensus 41 C~~~~C~~~C~~k~~~~~G~G~C~~~~~~~~~~C~C~Y~ 79 (80)
|+.++|.+.|..+|--.=--.-|..+ .|.|.|+
T Consensus 1 C~~~~CWa~CqaqhgiyFRRAyCdGs------~C~Cvf~ 33 (35)
T PF11415_consen 1 CDFQSCWANCQAQHGIYFRRAYCDGS------RCKCVFN 33 (35)
T ss_dssp --HHHHHHHHHHHS-TTEEEEEEETT------EEEEEE-
T ss_pred CcHHHHHHHHHHhhcchhhhhhccCC------eeEEEec
Confidence 78899999999998100023456554 6999874
No 8
>PF15240 Pro-rich: Proline-rich
Probab=86.75 E-value=0.34 Score=33.87 Aligned_cols=19 Identities=32% Similarity=0.590 Sum_probs=12.4
Q ss_pred HHHHHHHHHHhhhhhhccc
Q 040193 11 VFLLILSAALMAVRRVDAQ 29 (80)
Q Consensus 11 i~~lvls~~~~~~~~~qg~ 29 (80)
||++||+|+|.|++.||..
T Consensus 1 MLlVLLSvALLALSSAQ~~ 19 (179)
T PF15240_consen 1 MLLVLLSVALLALSSAQST 19 (179)
T ss_pred ChhHHHHHHHHHhhhcccc
Confidence 5566667766667777753
No 9
>PF02402 Lysis_col: Lysis protein; InterPro: IPR003059 The DNA sequence of the entire colicin E2 operon has been determined []. The operon comprises the colicin activity gene (ceaB), the colicin immunity gene (ceiB) and the lysis gene (celB), which is essential for colicin release from producing cells []. A putative LexA binding site is located upstream from ceaB, and a rho-independent terminator structure is located downstream from celB []. Comparison of the amino acid sequences of colicin E2 and cloacin DF13 reveal extensive similarity. These colicins have different modes of action and recognise different cell surface receptors; the two major regions of heterology at the C terminus, and in the C-terminal end of the central region are thought to correspond to the catalytic and receptor-recognition domains, respectively []. Sequence similarities between colicins E2, A and E1 [] are less striking. The colicin E2 (pyocin) immunity protein does not share similarity with either the colicin E3 or cloacin DF13 [] immunity proteins. By contrast, the lysis proteins of the ColE2, ColE1 and CloDF13 plasmids are almost identical except in the N-terminal regions, which themselves are similar to lipoprotein signal peptides []. Processing of the ColE2 prolysis protein to the mature form is prevented by globomycin, a specific inhibitor of the lipoprotein signal peptidase []. The mature ColE2 lysis protein is located in the cell envelope [].; GO: 0009405 pathogenesis, 0019835 cytolysis, 0019867 outer membrane
Probab=74.88 E-value=1.5 Score=24.29 Aligned_cols=18 Identities=39% Similarity=0.728 Sum_probs=13.8
Q ss_pred CchhhHHHHHHHHHHHHH
Q 040193 1 MAKLSFNNIFVFLLILSA 18 (80)
Q Consensus 1 MaK~s~~~~~i~~lvls~ 18 (80)
|-|+.++.||+++++|++
T Consensus 1 MkKi~~~~i~~~~~~L~a 18 (46)
T PF02402_consen 1 MKKIIFIGIFLLTMLLAA 18 (46)
T ss_pred CcEEEEeHHHHHHHHHHH
Confidence 678888888887776664
No 10
>smart00505 Knot1 Knottins. Knottins, representing plant lectins/antimicrobial peptides, plant proteinase/amylase inhibitors, plant gamma-thionins and arthropod defensins.
Probab=71.07 E-value=4.1 Score=21.33 Aligned_cols=33 Identities=27% Similarity=0.586 Sum_probs=23.0
Q ss_pred ccCChh--hHHHHhHhhccCCCeeeEEeeCCCCCCcceeEee
Q 040193 39 PNCSLE--DCRAKCINKYINKRGFGECIENGAHTGYDCYCFW 78 (80)
Q Consensus 39 ~~C~~~--~C~~~C~~k~~~~~G~G~C~~~~~~~~~~C~C~Y 78 (80)
.+|..+ .|+..|.++. ...|.|... ...|.|.+
T Consensus 11 g~C~~~~~~C~~~C~~~g---~~~G~C~~~----~~~C~C~~ 45 (45)
T smart00505 11 GNCKSSCALCAKLCKKKG---AKGGYCRGT----TRRCFCYK 45 (45)
T ss_pred CCccCCchHhHHHhhhcC---CCCCCcCCc----CCceEeeC
Confidence 457765 6999999864 345899653 23699864
No 11
>PHA03072 putative viral membrane protein; Provisional
Probab=66.22 E-value=5.8 Score=27.95 Aligned_cols=20 Identities=40% Similarity=0.461 Sum_probs=16.5
Q ss_pred chhhHHHHHHHHHHHHHHHh
Q 040193 2 AKLSFNNIFVFLLILSAALM 21 (80)
Q Consensus 2 aK~s~~~~~i~~lvls~~~~ 21 (80)
||.|...||+++|++|+++.
T Consensus 27 a~~sTl~ff~l~L~iS~llf 46 (190)
T PHA03072 27 AKTSTLIFFVIILAISVLLL 46 (190)
T ss_pred hhhhhHHHHHHHHHHHHHHH
Confidence 57788899999998888665
No 12
>PF03356 Pox_LP_H2: Viral late protein H2; InterPro: IPR005023 This entry represents the late protein H2 found in Vaccinia and other poxviruses. This protein is a highly conserved viral membrane protein found in all sequenced poxviruses, containing an N-terminal transmembrane domain and four conserved cysteines thought to be involved in the formation of intramolecular disulphide bonds []. H2 has been shown to be necessary for entry into the host cell and virus-induced cell-cell fusion, but is not required for virus morphogenesis or the attachment of virus particles to cells. It is part of an entry-fusion complex composed of eight viral membrane proteins [].
Probab=63.02 E-value=6.9 Score=27.56 Aligned_cols=20 Identities=45% Similarity=0.605 Sum_probs=16.4
Q ss_pred chhhHHHHHHHHHHHHHHHh
Q 040193 2 AKLSFNNIFVFLLILSAALM 21 (80)
Q Consensus 2 aK~s~~~~~i~~lvls~~~~ 21 (80)
||-|.+.||+++|.+|+++.
T Consensus 27 ak~sTl~ffvlil~iS~llf 46 (189)
T PF03356_consen 27 AKVSTLCFFVLILIISVLLF 46 (189)
T ss_pred hcchhHHHHHHHHHHHHHHH
Confidence 57788899998998888665
No 13
>PF11714 Inhibitor_I53: Thrombin inhibitor Madanin ; InterPro: IPR021716 Members of this family are the peptidase inhibitor madanin proteins. These proteins were isolated from tick saliva [].
Probab=62.31 E-value=8.8 Score=23.26 Aligned_cols=20 Identities=25% Similarity=0.331 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHhhhhhh
Q 040193 7 NNIFVFLLILSAALMAVRRV 26 (80)
Q Consensus 7 ~~~~i~~lvls~~~~~~~~~ 26 (80)
++|+|+..|+|+.+||-.+.
T Consensus 4 FaiLilavVaSAvVMAyPe~ 23 (78)
T PF11714_consen 4 FAILILAVVASAVVMAYPER 23 (78)
T ss_pred HHHHHHHHHHHHHHHhcccc
Confidence 35677777788888855543
No 14
>PF13956 Ibs_toxin: Toxin Ibs, type I toxin-antitoxin system
Probab=59.66 E-value=5.4 Score=18.12 Aligned_cols=10 Identities=50% Similarity=0.750 Sum_probs=4.6
Q ss_pred HHHHHHHHHH
Q 040193 8 NIFVFLLILS 17 (80)
Q Consensus 8 ~~~i~~lvls 17 (80)
+|++++|++|
T Consensus 6 IIlvvLLliS 15 (19)
T PF13956_consen 6 IILVVLLLIS 15 (19)
T ss_pred HHHHHHHhcc
Confidence 3444445444
No 15
>PHA02291 hypothetical protein
Probab=58.17 E-value=12 Score=24.60 Aligned_cols=17 Identities=29% Similarity=0.374 Sum_probs=11.9
Q ss_pred Cc-hhhHHHHHHHHHHHH
Q 040193 1 MA-KLSFNNIFVFLLILS 17 (80)
Q Consensus 1 Ma-K~s~~~~~i~~lvls 17 (80)
|+ |.|+.++++++++++
T Consensus 1 MS~K~~iFYiL~~~VL~~ 18 (132)
T PHA02291 1 MSRKASIFYILVVIVLAF 18 (132)
T ss_pred CCcchhhHHHHHHHHHHH
Confidence 55 778888877666654
No 16
>PF04202 Mfp-3: Foot protein 3; InterPro: IPR007328 Mytilus foot protein-3 (Mfp-3) is a highly polymorphic protein family located in the byssal adhesive plaques of blue mussels.
Probab=57.41 E-value=9 Score=22.96 Aligned_cols=15 Identities=33% Similarity=0.583 Sum_probs=10.3
Q ss_pred CchhhHHHHHHHHHH
Q 040193 1 MAKLSFNNIFVFLLI 15 (80)
Q Consensus 1 MaK~s~~~~~i~~lv 15 (80)
|-++|+..++.|+|+
T Consensus 1 mnn~Si~VLlaLvLI 15 (71)
T PF04202_consen 1 MNNLSIAVLLALVLI 15 (71)
T ss_pred CCchhHHHHHHHHHH
Confidence 677888776665554
No 17
>PHA03255 BDLF3; Provisional
Probab=56.70 E-value=10 Score=26.94 Aligned_cols=15 Identities=27% Similarity=0.676 Sum_probs=9.6
Q ss_pred HHHHHHHHHHH-HHhh
Q 040193 8 NIFVFLLILSA-ALMA 22 (80)
Q Consensus 8 ~~~i~~lvls~-~~~~ 22 (80)
-|+||+|+|.+ +||+
T Consensus 193 tflmlilifaagimma 208 (234)
T PHA03255 193 TFLMLILIFAAGLMMS 208 (234)
T ss_pred HHHHHHHHHHhhHhhh
Confidence 46777888854 4553
No 18
>cd00107 Knot1 The "knottin" fold is stable cysteine-rich scaffold, in which one disulfide bridge crosses the macrocycle made by two other disulfide bridges and the connecting backbone segments. Members include plant lectins/antimicrobial peptides, plant proteinase/amylase inhibitors, plant gamma-thionins, and arthropod defensins.
Probab=56.24 E-value=13 Score=18.41 Aligned_cols=30 Identities=30% Similarity=0.812 Sum_probs=20.5
Q ss_pred CCh-hhHHHHhHhhccCCCeeeEEeeCCCCCCcceeEe
Q 040193 41 CSL-EDCRAKCINKYINKRGFGECIENGAHTGYDCYCF 77 (80)
Q Consensus 41 C~~-~~C~~~C~~k~~~~~G~G~C~~~~~~~~~~C~C~ 77 (80)
|.. +.|+..|.++. ...|.|... ...|.|.
T Consensus 3 C~~~~~C~~~Ck~~g---~~~G~C~~~----~~~C~C~ 33 (33)
T cd00107 3 CFSDSYCDKECKKKG---ASGGYCYGQ----GLACWCY 33 (33)
T ss_pred CCCchhHHHHHhHcC---CCccEeCCC----CCeEEeC
Confidence 544 56999999763 445999753 2368884
No 19
>COG2991 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=55.93 E-value=10 Score=23.05 Aligned_cols=18 Identities=22% Similarity=0.645 Sum_probs=9.2
Q ss_pred cccccccc----ccCChhhHHHHhH
Q 040193 31 KRCEEKSN----PNCSLEDCRAKCI 51 (80)
Q Consensus 31 ~~C~~~i~----~~C~~~~C~~~C~ 51 (80)
..|--+-. +.|| |...|.
T Consensus 31 GSCGGi~alGi~K~Cd---C~~pCD 52 (77)
T COG2991 31 GSCGGIAALGIEKVCD---CDEPCD 52 (77)
T ss_pred cccccHHhhccchhcC---CCCchH
Confidence 45654433 5566 455554
No 20
>PF05294 Toxin_5: Scorpion short toxin; InterPro: IPR007958 This family contains various secreted scorpion short toxins which seem to be unrelated to those described in IPR001947 from INTERPRO.; GO: 0009405 pathogenesis, 0005576 extracellular region; PDB: 1SIS_A 1CHL_A.
Probab=54.02 E-value=15 Score=18.79 Aligned_cols=20 Identities=40% Similarity=1.185 Sum_probs=13.4
Q ss_pred hhHHHHhHhhccCCCeeeEEeeCCCCCCcceeE
Q 040193 44 EDCRAKCINKYINKRGFGECIENGAHTGYDCYC 76 (80)
Q Consensus 44 ~~C~~~C~~k~~~~~G~G~C~~~~~~~~~~C~C 76 (80)
.+|+.=| .|.|+|..+ +|+|
T Consensus 13 ~kC~~CC-------gg~GkC~Gp------qClC 32 (32)
T PF05294_consen 13 KKCRDCC-------GGRGKCFGP------QCLC 32 (32)
T ss_dssp HHHHHHC-------TTSEEEETT------EEEE
T ss_pred HHHHHHh-------CCCCeEcCC------cccC
Confidence 4555555 355999875 7887
No 21
>PF10828 DUF2570: Protein of unknown function (DUF2570); InterPro: IPR022538 This entry is represented by Bacteriophage IME08, pseT.3. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This is a family of proteins with unknown function.
Probab=52.14 E-value=20 Score=22.57 Aligned_cols=21 Identities=29% Similarity=0.300 Sum_probs=14.2
Q ss_pred CchhhHHHHHHHHHHHHHHHh
Q 040193 1 MAKLSFNNIFVFLLILSAALM 21 (80)
Q Consensus 1 MaK~s~~~~~i~~lvls~~~~ 21 (80)
|+|.....+.+|+++|++++.
T Consensus 1 ~~~~~~~~l~~lvl~L~~~l~ 21 (110)
T PF10828_consen 1 MKKYIYIALAVLVLGLGGWLW 21 (110)
T ss_pred ChHHHHHHHHHHHHHHHHHHH
Confidence 777777776666666666554
No 22
>PF01097 Defensin_2: Arthropod defensin; InterPro: IPR001542 Arthropod defensins are a family of insect and scorpion cysteine-rich antibacterial peptides, primarily active against Gram-positive bacteria [, , , , ]. All these peptides range in length from 38 to 51 amino acids. There are six conserved cysteines all involved in intrachain disulphide bonds. A schematic representation of peptides from the arthropod defensin family is shown below. +----------------------------+ | | xxCxxxxxxxxxxxxxxCxxxCxxxxxxxxxCxxxxxCxCxx | | | | +---|---------------+ | +-----------------+ 'C': conserved cysteine involved in a disulphide bond. Although low level sequence similarities have been reported [] between the arthropod defensins and mammalian defensins, the topological arrangement of the disulphide bonds as well as the tertiary structure [] are completely different in the two families.; GO: 0006952 defense response; PDB: 1FJN_A 1ICA_A 1L4V_A 2LLD_A 3E7R_L 3E7U_X 1ZFU_A 2B68_A 2NZ3_A 2NY8_X ....
Probab=52.12 E-value=33 Score=17.63 Aligned_cols=27 Identities=33% Similarity=0.674 Sum_probs=20.0
Q ss_pred hhhHHHHhHhhccCCCeeeEEeeCCCCCCcceeEe
Q 040193 43 LEDCRAKCINKYINKRGFGECIENGAHTGYDCYCF 77 (80)
Q Consensus 43 ~~~C~~~C~~k~~~~~G~G~C~~~~~~~~~~C~C~ 77 (80)
...|.+.|..+- ..| |-|... ..|.|+
T Consensus 8 ~~~C~~hC~~~g--~~G-GyC~~~-----~vC~Cr 34 (34)
T PF01097_consen 8 HSACAAHCLSIG--YRG-GYCNGK-----GVCVCR 34 (34)
T ss_dssp CHHHHHHHHHHT--CSE-EEEETT-----SCEEEE
T ss_pred HHHHHHHHHHhC--Ccc-eeCCCC-----CEEEeC
Confidence 467999999886 245 999863 378885
No 23
>PF14147 Spore_YhaL: Sporulation protein YhaL
Probab=50.76 E-value=20 Score=20.36 Aligned_cols=20 Identities=15% Similarity=0.198 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHhhhhhhc
Q 040193 7 NNIFVFLLILSAALMAVRRVD 27 (80)
Q Consensus 7 ~~~~i~~lvls~~~~~~~~~q 27 (80)
.|+.++-+++|++|. ++-+.
T Consensus 5 vY~vi~gI~~S~ym~-v~t~~ 24 (52)
T PF14147_consen 5 VYFVIAGIIFSGYMA-VKTAK 24 (52)
T ss_pred HHHHHHHHHHHHHHH-HHHHH
Confidence 467777788899887 55443
No 24
>PLN00214 putative protein; Provisional
Probab=49.11 E-value=7.8 Score=25.37 Aligned_cols=28 Identities=25% Similarity=0.561 Sum_probs=14.4
Q ss_pred Cchhh--HHHHHHHHHHHHHHH--hhhhhhcc
Q 040193 1 MAKLS--FNNIFVFLLILSAAL--MAVRRVDA 28 (80)
Q Consensus 1 MaK~s--~~~~~i~~lvls~~~--~~~~~~qg 28 (80)
|||++ .+.+||++-++-+|+ .++++++.
T Consensus 1 m~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~ 32 (115)
T PLN00214 1 MSKFSSQITTLFIVVALVCAFVPVFSVEEAEA 32 (115)
T ss_pred CCccccchhHHHHHHHHHHhcccccchhhhHH
Confidence 77766 445555554444432 12466654
No 25
>CHL00020 psbN photosystem II protein N
Probab=47.93 E-value=23 Score=19.37 Aligned_cols=18 Identities=28% Similarity=0.364 Sum_probs=12.7
Q ss_pred CchhhHHHHHHHHHHHHH
Q 040193 1 MAKLSFNNIFVFLLILSA 18 (80)
Q Consensus 1 MaK~s~~~~~i~~lvls~ 18 (80)
|.-.+.+.|||..|++|+
T Consensus 1 me~A~~~~i~i~~ll~~~ 18 (43)
T CHL00020 1 METATLVAIFISGLLVSF 18 (43)
T ss_pred CCchhhHHHHHHHHHHHh
Confidence 555667778887777763
No 26
>PF03929 PepSY_TM: PepSY-associated TM helix; InterPro: IPR005625 This domain represents a conserved transmembrane (TM) helix that is found in bacterial proteins. Coil residues are significantly more conserved than other residues and are frequently found within channels and transporters, where they introduce the flexibility and polarity required for transport across the membrane []. This TM helix associates with PepSY (peptidase (M4) and YpeB of subtilis). PepSY is a repeated region first identified in Thermoanaerobacter tengcongensis. The PepSY domain functions in the control of M4 peptidases through their propeptide and in the germination of spores. It may also play a part in regulating protease activity [].
Probab=45.18 E-value=33 Score=16.70 Aligned_cols=13 Identities=8% Similarity=0.427 Sum_probs=6.7
Q ss_pred HHHHHHHHHHHHH
Q 040193 7 NNIFVFLLILSAA 19 (80)
Q Consensus 7 ~~~~i~~lvls~~ 19 (80)
++++++++.+++.
T Consensus 12 ~al~~lv~~iTGl 24 (27)
T PF03929_consen 12 FALFMLVFAITGL 24 (27)
T ss_pred HHHHHHHHHHHHH
Confidence 4455555555544
No 27
>TIGR01606 holin_BlyA holin, BlyA family. This family represents a BlyA, a small holin found in Borrelia circular plasmids that prove to be temperate phage. This protein was previously proposed to be an hemolysin. BlyA is small (67 residues) and contains two largely hydrophobic helices and a highly charged C-terminus.
Probab=42.23 E-value=38 Score=19.89 Aligned_cols=20 Identities=40% Similarity=0.471 Sum_probs=14.5
Q ss_pred chhhHHHHHHHHHHHHHHHh
Q 040193 2 AKLSFNNIFVFLLILSAALM 21 (80)
Q Consensus 2 aK~s~~~~~i~~lvls~~~~ 21 (80)
+|+....+|+.++++++.+.
T Consensus 16 iklI~lmifi~~~IL~~~l~ 35 (63)
T TIGR01606 16 IKLIKLMIFISIFILSLGLI 35 (63)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 36667778888888886654
No 28
>PRK13183 psbN photosystem II reaction center protein N; Provisional
Probab=41.22 E-value=36 Score=18.83 Aligned_cols=18 Identities=17% Similarity=0.198 Sum_probs=11.6
Q ss_pred CchhhHHHHHHHHHHHHH
Q 040193 1 MAKLSFNNIFVFLLILSA 18 (80)
Q Consensus 1 MaK~s~~~~~i~~lvls~ 18 (80)
|.-.+.+.|||..|++|+
T Consensus 4 me~A~~~~i~i~~lL~~~ 21 (46)
T PRK13183 4 MSPALSLAITILAILLAL 21 (46)
T ss_pred cchhHHHHHHHHHHHHHH
Confidence 444566677777777763
No 29
>COG3771 Predicted membrane protein [Function unknown]
Probab=40.72 E-value=27 Score=22.06 Aligned_cols=14 Identities=36% Similarity=0.764 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHHh
Q 040193 8 NIFVFLLILSAALM 21 (80)
Q Consensus 8 ~~~i~~lvls~~~~ 21 (80)
||+++++||.+|++
T Consensus 3 yil~~vlvlaifli 16 (97)
T COG3771 3 YILIFVLVLAIFLI 16 (97)
T ss_pred hHHHHHHHHHHHHH
Confidence 56666777766665
No 30
>PF08027 Albumin_I: Albumin I; InterPro: IPR012512 The albumin I protein, a hormone-like peptide, stimulates kinase activity upon binding a membrane bound 43 kDa receptor. The structure of this region reveals a knottin like fold, comprise of three beta strands [].; GO: 0045735 nutrient reservoir activity, 0009405 pathogenesis; PDB: 1P8B_A 1JU8_A.
Probab=40.54 E-value=12 Score=24.72 Aligned_cols=30 Identities=37% Similarity=0.622 Sum_probs=16.0
Q ss_pred cccccccccCChhhHHHHhHhhccCCCeeeEEeeC
Q 040193 32 RCEEKSNPNCSLEDCRAKCINKYINKRGFGECIEN 66 (80)
Q Consensus 32 ~C~~~i~~~C~~~~C~~~C~~k~~~~~G~G~C~~~ 66 (80)
.|...-.++|...+|+ |.... -=+|.|+..
T Consensus 25 ~Cs~Fe~ppCgss~Cr--CiP~~---l~~G~C~~p 54 (120)
T PF08027_consen 25 VCSPFEMPPCGSSDCR--CIPWG---LFVGFCIYP 54 (120)
T ss_dssp EE-TTSSSCCC-TTSE--EEE-S---SS-EEEE-T
T ss_pred cccCCcCCCCCCCCee--EEEee---ecceEEECC
Confidence 3443322679988898 86433 346889874
No 31
>KOG4063 consensus Major epididymal secretory protein HE1 [Function unknown]
Probab=37.10 E-value=45 Score=22.96 Aligned_cols=40 Identities=28% Similarity=0.517 Sum_probs=22.5
Q ss_pred hhhHHHHHHHHHHHHHHHhhh--hhhcccccccccc----c--c-ccCChhhH
Q 040193 3 KLSFNNIFVFLLILSAALMAV--RRVDAQVKRCEEK----S--N-PNCSLEDC 46 (80)
Q Consensus 3 K~s~~~~~i~~lvls~~~~~~--~~~qg~~~~C~~~----i--~-~~C~~~~C 46 (80)
++|+..+.+|.++|| +++. .+++ - ++|-+. . . ++|+...|
T Consensus 2 ~ms~~~~v~l~alls--~a~aq~~~t~-~-k~C~ss~g~~~~V~i~~C~t~pC 50 (158)
T KOG4063|consen 2 MMSFLKTVILLALLS--LAAAQAISTG-V-KQCGSSDGTPLEVKIDGCPTTPC 50 (158)
T ss_pred chHHHHHHHHHHHHH--HhhhcccCcc-c-ccccCCCCcceEEEecCCCCCce
Confidence 456767667677766 4411 1222 1 788873 1 1 77887744
No 32
>PF10690 Myticin-prepro: Myticin pre-proprotein from the mussel; InterPro: IPR019631 Myticin is a cysteine-rich peptide produced in three isoforms, A, B and C, by Mytilus galloprovincialis (Mediterranean mussel). Isoforms A and B show antibacterial activity against Gram-positive bacteria, while isoform B is additionally active against the fungus Fusarium oxysporum and a Gram-negative bacterium, Escherichia coli (streptomycin resistant strain D31) []. Myticin-prepro is the precursor peptide. The mature molecule, named myticin, consists of 40 residues, with four intramolecular disulphide bridges and a cysteine array in the primary structure different from that of previously characterised cysteine-rich antimicrobial peptides. The first 20 amino acids are a putative signal peptide, and the antimicrobial peptide sequence is a 36-residue C-terminal extension. Such a structure suggests that myticins are synthesised as prepro-proteins that are then processed by various proteolytic events before storage in the haemocytes as the active peptide. Myticin precursors are expressed mainly in the haemocytes. ; PDB: 2EEM_A.
Probab=35.89 E-value=42 Score=21.32 Aligned_cols=32 Identities=13% Similarity=0.346 Sum_probs=7.3
Q ss_pred HHHHHHHHHhhhhhhccccccccccccccCChhhHHHHhHhhc
Q 040193 12 FLLILSAALMAVRRVDAQVKRCEEKSNPNCSLEDCRAKCINKY 54 (80)
Q Consensus 12 ~~lvls~~~~~~~~~qg~~~~C~~~i~~~C~~~~C~~~C~~k~ 54 (80)
|.+++++++. +.|+|.+ . |..--|...|....
T Consensus 7 LAv~vAViv~-v~ea~s~--~--------CtS~yC~~fCgsa~ 38 (98)
T PF10690_consen 7 LAVVVAVIVG-VQEAQSI--S--------CTSYYCKKFCGSAR 38 (98)
T ss_dssp -----------------------------HHHH-HHHHHHHTT
T ss_pred cccccccccc-ccccccc--c--------cchhHHHHhcCCCC
Confidence 3445565565 6777753 2 44444666666554
No 33
>PHA02706 hypothetical protein; Provisional
Probab=33.13 E-value=53 Score=18.64 Aligned_cols=16 Identities=19% Similarity=0.364 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHHHHh
Q 040193 6 FNNIFVFLLILSAALM 21 (80)
Q Consensus 6 ~~~~~i~~lvls~~~~ 21 (80)
.+.|-|+|.+|++..+
T Consensus 7 llviaiimmllgi~si 22 (58)
T PHA02706 7 LLVIAIIMMLLGIASI 22 (58)
T ss_pred hHHHHHHHHHHhhHHH
Confidence 3444555666676655
No 34
>PF12729 4HB_MCP_1: Four helix bundle sensory module for signal transduction; InterPro: IPR024478 This entry represents a four-helix bundle that operates as a ubiquitous sensory module in prokaryotic signal-transduction, which is known as four-helix bundles methyl-accepting chemotaxis protein (4HB_MCP) domain. The 4HB_MCP is always found between two predicted transmembrane helices indicating that it detects only extracellular signals. In many cases the domain is associated with a cytoplasmic HAMP domain suggesting that most proteins carrying the bundle might share the mechanism of transmembrane signalling which is well-characterised in E coli chemoreceptors [].
Probab=32.70 E-value=52 Score=20.34 Aligned_cols=14 Identities=36% Similarity=0.503 Sum_probs=6.6
Q ss_pred hhhHHHHHHHHHHH
Q 040193 3 KLSFNNIFVFLLIL 16 (80)
Q Consensus 3 K~s~~~~~i~~lvl 16 (80)
|+...+++++++++
T Consensus 7 KL~~~f~~~~~l~~ 20 (181)
T PF12729_consen 7 KLILGFGLIILLLL 20 (181)
T ss_pred HHHHHHHHHHHHHH
Confidence 55555444444333
No 35
>TIGR02209 ftsL_broad cell division protein FtsL. This model represents FtsL, both forms similar to that in E. coli and similar to that in B. subtilis. FtsL is one of the later proteins active in cell division septum formation. FtsL is small, low in complexity, and highly divergent. The scope of this model is broader than that of the Pfam model pfam04999.3 for FtsL, as this one includes FtsL from Bacillus subtilis and related species.
Probab=31.61 E-value=63 Score=18.71 Aligned_cols=6 Identities=33% Similarity=0.169 Sum_probs=2.4
Q ss_pred CchhhH
Q 040193 1 MAKLSF 6 (80)
Q Consensus 1 MaK~s~ 6 (80)
|.++.+
T Consensus 1 ~~~l~~ 6 (85)
T TIGR02209 1 EKKLYV 6 (85)
T ss_pred CchHHH
Confidence 344333
No 36
>COG5487 Small integral membrane protein [Function unknown]
Probab=31.07 E-value=60 Score=18.46 Aligned_cols=15 Identities=40% Similarity=0.647 Sum_probs=7.4
Q ss_pred chhhHHHHHHHHHHHH
Q 040193 2 AKLSFNNIFVFLLILS 17 (80)
Q Consensus 2 aK~s~~~~~i~~lvls 17 (80)
||+.+.. |++++++|
T Consensus 31 AkIlF~i-~~vlf~vs 45 (54)
T COG5487 31 AKILFFI-FLVLFLVS 45 (54)
T ss_pred HHHHHHH-HHHHHHHH
Confidence 4666544 33344445
No 37
>PF05102 Holin_BlyA: holin, BlyA family; InterPro: IPR006493 This family is represented by BlyA, a small holin found in Borrelia circular plasmids that prove to be temperate phage []. This protein was previously proposed to be a haemolysin. BlyA is small (67 residues) and contains two largely hydrophobic helices and a highly charged C terminus.
Probab=30.75 E-value=79 Score=18.48 Aligned_cols=19 Identities=37% Similarity=0.537 Sum_probs=12.6
Q ss_pred hhhHHHHHHHHHHHHHHHh
Q 040193 3 KLSFNNIFVFLLILSAALM 21 (80)
Q Consensus 3 K~s~~~~~i~~lvls~~~~ 21 (80)
|+....+|+.++++++.+.
T Consensus 17 klI~~~ifI~v~IL~~iii 35 (61)
T PF05102_consen 17 KLIILMIFITVLILPLIII 35 (61)
T ss_pred hhhHHHHHHHHHHHHHHHH
Confidence 5555657777777776554
No 38
>PF08120 Toxin_32: Tamulustoxin family; InterPro: IPR012636 This family consists of the tamulustoxins, which are found in the venom of Mesobuthus tamulus (Eastern Indian scorpion) (Buthus tamulus). Tamulustoxin shares no similarity with other scorpion venom toxins, although the positions of its six cysteine residues suggest that it shares the same structural scaffold. Tamulustoxin acts as a potassium channel blocker [].; GO: 0019870 potassium channel inhibitor activity, 0009405 pathogenesis, 0005576 extracellular region
Probab=30.30 E-value=7.8 Score=19.87 Aligned_cols=33 Identities=27% Similarity=0.809 Sum_probs=20.9
Q ss_pred CChhhHHHHhHhhccCCCeeeEEeeCCCCCCcceeEe
Q 040193 41 CSLEDCRAKCINKYINKRGFGECIENGAHTGYDCYCF 77 (80)
Q Consensus 41 C~~~~C~~~C~~k~~~~~G~G~C~~~~~~~~~~C~C~ 77 (80)
|..-.|...|.+..| .-.|+|+.... ...|.|.
T Consensus 2 chfvicttdcrrnsp--gtygecvkkek--gkecvck 34 (35)
T PF08120_consen 2 CHFVICTTDCRRNSP--GTYGECVKKEK--GKECVCK 34 (35)
T ss_pred ceEEEeccccccCCC--Cchhhhhhhcc--Cccceec
Confidence 334456777777764 35789987532 3568874
No 39
>PF02060 ISK_Channel: Slow voltage-gated potassium channel; InterPro: IPR000369 Potassium channels are the most diverse group of the ion channel family [, ]. They are important in shaping the action potential, and in neuronal excitability and plasticity []. The potassium channel family is composed of several functionally distinct isoforms, which can be broadly separated into 2 groups []: the practically non-inactivating 'delayed' group and the rapidly inactivating 'transient' group. These are all highly similar proteins, with only small amino acid changes causing the diversity of the voltage-dependent gating mechanism, channel conductance and toxin binding properties. Each type of K+ channel is activated by different signals and conditions depending on their type of regulation: some open in response to depolarisation of the plasma membrane; others in response to hyperpolarisation or an increase in intracellular calcium concentration; some can be regulated by binding of a transmitter, together with intracellular kinases; while others are regulated by GTP-binding proteins or other second messengers []. In eukaryotic cells, K+ channels are involved in neural signalling and generation of the cardiac rhythm, act as effectors in signal transduction pathways involving G protein-coupled receptors (GPCRs) and may have a role in target cell lysis by cytotoxic T-lymphocytes []. In prokaryotic cells, they play a role in the maintenance of ionic homeostasis []. All K+ channels discovered so far possess a core of alpha subunits, each comprising either one or two copies of a highly conserved pore loop domain (P-domain). The P-domain contains the sequence (T/SxxTxGxG), which has been termed the K+ selectivity sequence. In families that contain one P-domain, four subunits assemble to form a selective pathway for K+ across the membrane. However, it remains unclear how the 2 P-domain subunits assemble to form a selective pore. The functional diversity of these families can arise through homo- or hetero-associations of alpha subunits or association with auxiliary cytoplasmic beta subunits. K+ channel subunits containing one pore domain can be assigned into one of two superfamilies: those that possess six transmembrane (TM) domains and those that possess only two TM domains. The six TM domain superfamily can be further subdivided into conserved gene families: the voltage-gated (Kv) channels; the KCNQ channels (originally known as KvLQT channels); the EAG-like K+ channels; and three types of calcium (Ca)-activated K+ channels (BK, IK and SK) []. The 2TM domain family comprises inward-rectifying K+ channels. In addition, there are K+ channel alpha-subunits that possess two P-domains. These are usually highly regulated K+ selective leak channels. Two types of beta subunit (KCNE and KCNAB) are presently known to associate with voltage-gated alpha subunits (Kv, KCNQ and eag-like). However, not all combinations of alpha and beta subunits are possible. The KCNE family of K+ channel subunits are membrane glycoproteins that possess a single transmembrane (TM) domain. They share no structural relationship with the alpha subunit proteins, which possess pore forming domains. The subunits appear to have a regulatory function, modulating the kinetics and voltage dependence of the alpha subunits of voltage-dependent K+ channels. KCNE subunits are formed from short polypeptides of ~130 amino acids, and are divided into five subfamilies: KCNE1 (MinK/IsK), KCNE2 (MiRP1), KCNE3 (MiRP2), KCNE4 (MiRP3) and KCNE1L (AMMECR2). ; GO: 0005249 voltage-gated potassium channel activity, 0006811 ion transport, 0016020 membrane; PDB: 2K21_A.
Probab=30.25 E-value=45 Score=22.24 Aligned_cols=15 Identities=13% Similarity=0.171 Sum_probs=7.8
Q ss_pred hHHHHHHHHHHHHHH
Q 040193 5 SFNNIFVFLLILSAA 19 (80)
Q Consensus 5 s~~~~~i~~lvls~~ 19 (80)
.++||+++|.++|.|
T Consensus 43 ~~lYIL~vmgfFgff 57 (129)
T PF02060_consen 43 EYLYILVVMGFFGFF 57 (129)
T ss_dssp TT-HHHHHHHHHHHH
T ss_pred eeehHHHHHHHHHHH
Confidence 355666655555544
No 40
>PF09771 Tmemb_18A: Transmembrane protein 188; InterPro: IPR019168 The function of this family of transmembrane proteins has not, as yet, been determined.
Probab=29.25 E-value=36 Score=22.51 Aligned_cols=20 Identities=30% Similarity=0.474 Sum_probs=12.3
Q ss_pred hhhcccc---cccccccc---ccCCh
Q 040193 24 RRVDAQV---KRCEEKSN---PNCSL 43 (80)
Q Consensus 24 ~~~qg~~---~~C~~~i~---~~C~~ 43 (80)
+++.++. .+|++++. =.||.
T Consensus 86 krVvapsII~~R~R~vL~~fnmscd~ 111 (125)
T PF09771_consen 86 KRVVAPSIIASRCRSVLADFNMSCDD 111 (125)
T ss_pred hHhhCchHHHHHHHHHHhhhccCcCC
Confidence 4444443 68999887 24663
No 41
>PF10794 DUF2606: Protein of unknown function (DUF2606); InterPro: IPR019730 This entry represents bacterial proteins with unknown function.
Probab=29.16 E-value=43 Score=22.33 Aligned_cols=25 Identities=16% Similarity=0.226 Sum_probs=16.5
Q ss_pred hhhHHHHHHHHHHHHHHHhhhhhhc
Q 040193 3 KLSFNNIFVFLLILSAALMAVRRVD 27 (80)
Q Consensus 3 K~s~~~~~i~~lvls~~~~~~~~~q 27 (80)
|-|.+++|+.++++++-..+.++++
T Consensus 13 Ky~~~i~~l~i~~l~~c~~~~es~~ 37 (131)
T PF10794_consen 13 KYSKLIWFLVIIVLCGCIANNESAA 37 (131)
T ss_pred chhhHHHHHHHHHHhcccccchhhh
Confidence 5677788888888876555344444
No 42
>PF11912 DUF3430: Protein of unknown function (DUF3430); InterPro: IPR021837 This family of proteins are functionally uncharacterised. This protein is found in eukaryotes. Proteins in this family are typically between 209 to 265 amino acids in length.
Probab=29.09 E-value=52 Score=22.18 Aligned_cols=13 Identities=46% Similarity=0.636 Sum_probs=6.3
Q ss_pred hhhHHHHHHHHHH
Q 040193 3 KLSFNNIFVFLLI 15 (80)
Q Consensus 3 K~s~~~~~i~~lv 15 (80)
|++++.|++++++
T Consensus 2 Kll~~lilli~~~ 14 (212)
T PF11912_consen 2 KLLISLILLILLI 14 (212)
T ss_pred cHHHHHHHHHHHH
Confidence 6655554443333
No 43
>PF13172 PepSY_TM_1: PepSY-associated TM helix
Probab=27.76 E-value=87 Score=15.46 Aligned_cols=14 Identities=50% Similarity=0.878 Sum_probs=7.2
Q ss_pred HHHHHHHHHHHHHh
Q 040193 8 NIFVFLLILSAALM 21 (80)
Q Consensus 8 ~~~i~~lvls~~~~ 21 (80)
.++++++.++++.+
T Consensus 17 ~~~ll~~~lTG~~l 30 (34)
T PF13172_consen 17 AIFLLLLALTGALL 30 (34)
T ss_pred HHHHHHHHHHHHHH
Confidence 44455555555544
No 44
>TIGR00247 conserved hypothetical protein, YceG family. This uncharacterized protein family, found in three of four microbial genomes, virtually always once per genome, includes YceG from Escherichia coli. This protein is encoded next to PabC, 4-amino-4-deoxychorismate lyase, in E. coli and numerous other proteobacteria, but that proximity is not conserved in other lineages. Numerous members of this family have been misannotated as aminodeoxychorismate lyase, apparently because of promiximty to PabC.
Probab=27.71 E-value=68 Score=23.98 Aligned_cols=16 Identities=25% Similarity=0.517 Sum_probs=8.5
Q ss_pred CchhhHHHHHHHHHHH
Q 040193 1 MAKLSFNNIFVFLLIL 16 (80)
Q Consensus 1 MaK~s~~~~~i~~lvl 16 (80)
|-|+..+++++++|++
T Consensus 1 ~~~~~~~i~~~~vl~~ 16 (342)
T TIGR00247 1 MKKFLIIILLLFVLFF 16 (342)
T ss_pred ChhHHHHHHHHHHHHH
Confidence 6666555554444444
No 45
>PRK13664 hypothetical protein; Provisional
Probab=27.65 E-value=71 Score=18.63 Aligned_cols=15 Identities=13% Similarity=0.456 Sum_probs=6.9
Q ss_pred HHHHHHHHHHhhhhh
Q 040193 11 VFLLILSAALMAVRR 25 (80)
Q Consensus 11 i~~lvls~~~~~~~~ 25 (80)
|++|++|+.+-++++
T Consensus 12 ill~lvG~i~N~iK~ 26 (62)
T PRK13664 12 VLVFLVGVLLNVIKD 26 (62)
T ss_pred HHHHHHHHHHHHHHH
Confidence 444444654433444
No 46
>PF00008 EGF: EGF-like domain This is a sub-family of the Pfam entry This is a sub-family of the Pfam entry; InterPro: IPR006209 A sequence of about thirty to forty amino-acid residues long found in the sequence of epidermal growth factor (EGF) has been shown [, , , , ] to be present, in a more or less conserved form, in a large number of other, mostly animal proteins. The list of proteins currently known to contain one or more copies of an EGF-like pattern is large and varied. The functional significance of EGF domains in what appear to be unrelated proteins is not yet clear. However, a common feature is that these repeats are found in the extracellular domain of membrane-bound proteins or in proteins known to be secreted (exception: prostaglandin G/H synthase). The EGF domain includes six cysteine residues which have been shown (in EGF) to be involved in disulphide bonds. The main structure is a two-stranded beta-sheet followed by a loop to a C-terminal short two-stranded sheet. Subdomains between the conserved cysteines vary in length.; GO: 0005515 protein binding; PDB: 1WHE_A 1CCF_A 1APO_A 1WHF_A 2VJ3_A 1TOZ_A 4D90_B 3CFW_A 1EDM_B 1IXA_A ....
Probab=26.50 E-value=50 Score=16.11 Aligned_cols=18 Identities=44% Similarity=1.025 Sum_probs=13.4
Q ss_pred CeeeEEeeCCCCCCcceeEe
Q 040193 58 RGFGECIENGAHTGYDCYCF 77 (80)
Q Consensus 58 ~G~G~C~~~~~~~~~~C~C~ 77 (80)
|| |+|++.. .+.+.|.|.
T Consensus 8 n~-g~C~~~~-~~~y~C~C~ 25 (32)
T PF00008_consen 8 NG-GTCIDLP-GGGYTCECP 25 (32)
T ss_dssp TT-EEEEEES-TSEEEEEEB
T ss_pred CC-eEEEeCC-CCCEEeECC
Confidence 44 8999875 357889985
No 47
>PF11395 DUF2873: Protein of unknown function (DUF2873); InterPro: IPR021532 This entry is represented by the human SARS coronavirus, Orf7b; it is a family of uncharacterised viral proteins.
Probab=25.68 E-value=1.2e+02 Score=16.23 Aligned_cols=10 Identities=10% Similarity=0.401 Sum_probs=4.7
Q ss_pred hhcccccccc
Q 040193 25 RVDAQVKRCE 34 (80)
Q Consensus 25 ~~qg~~~~C~ 34 (80)
|.|.-++.|+
T Consensus 33 e~qdl~epct 42 (43)
T PF11395_consen 33 EIQDLNEPCT 42 (43)
T ss_pred hhhhhccccc
Confidence 5664334443
No 48
>KOG3384 consensus Selenoprotein [General function prediction only]
Probab=25.53 E-value=73 Score=21.73 Aligned_cols=32 Identities=22% Similarity=0.438 Sum_probs=16.8
Q ss_pred CchhhHHHHHHHHHHHHHHHhhhhhhccccccccc
Q 040193 1 MAKLSFNNIFVFLLILSAALMAVRRVDAQVKRCEE 35 (80)
Q Consensus 1 MaK~s~~~~~i~~lvls~~~~~~~~~qg~~~~C~~ 35 (80)
|+|+..+..++.+++.+.+.. .++.+- +.|.+
T Consensus 1 ~~~m~vl~~ll~~vl~~~~~~-~ee~s~--eeC~~ 32 (154)
T KOG3384|consen 1 MAKMVVLSLLLALVLASTISA-KEELST--EECED 32 (154)
T ss_pred CchHHHHHHHHHHHHHHHHHH-HHHhhH--HHHHH
Confidence 788877666554444342222 344432 45654
No 49
>PRK09039 hypothetical protein; Validated
Probab=25.19 E-value=73 Score=23.96 Aligned_cols=11 Identities=18% Similarity=0.567 Sum_probs=5.6
Q ss_pred HHHHHHHHHHh
Q 040193 11 VFLLILSAALM 21 (80)
Q Consensus 11 i~~lvls~~~~ 21 (80)
++|+||++||+
T Consensus 29 ~~~f~l~~f~~ 39 (343)
T PRK09039 29 VIMFLLTVFVV 39 (343)
T ss_pred HHHHHHHHHHH
Confidence 34444555554
No 50
>PF10731 Anophelin: Thrombin inhibitor from mosquito; InterPro: IPR018932 Members of this family are all inhibitors of thrombin, the peptidase that is at the end of the blood coagulation cascade and which creates the clot by cleaving fibrinogen. The interaction between thrombin and fibrinogen involves two different areas of contact - via the thrombin active site and via a second substrate-binding site known as an exosite. The inhibitor acts by blocking the exosite, rather than by interacting with the active site. The inhibitors are from mosquitoes that feed on human blood and which, by inhibiting thrombin, prevent the blood from clotting and keep it flowing.
Probab=24.77 E-value=72 Score=18.77 Aligned_cols=15 Identities=33% Similarity=0.443 Sum_probs=8.4
Q ss_pred Cc-hhhHHHHHHHHHH
Q 040193 1 MA-KLSFNNIFVFLLI 15 (80)
Q Consensus 1 Ma-K~s~~~~~i~~lv 15 (80)
|| |+..++|+-+.|+
T Consensus 1 MA~Kl~vialLC~aLv 16 (65)
T PF10731_consen 1 MASKLIVIALLCVALV 16 (65)
T ss_pred CcchhhHHHHHHHHHH
Confidence 66 7666665544443
No 51
>PHA00645 hypothetical protein
Probab=24.74 E-value=49 Score=21.63 Aligned_cols=28 Identities=18% Similarity=0.463 Sum_probs=16.0
Q ss_pred CchhhHHHHHHHHHHHHHHHhhhhhhcc
Q 040193 1 MAKLSFNNIFVFLLILSAALMAVRRVDA 28 (80)
Q Consensus 1 MaK~s~~~~~i~~lvls~~~~~~~~~qg 28 (80)
|+-+++.+|.++.-|+.+.+.|+..+..
T Consensus 38 ~Tnipl~v~wviggVi~~~~~~i~~tst 65 (125)
T PHA00645 38 MTNTSIAYFLVFFMVIKLSIYAIHGTST 65 (125)
T ss_pred CCCCchHHHHHHHHHHHhheeEEcccch
Confidence 4556666666666666544444566543
No 52
>PRK12750 cpxP periplasmic repressor CpxP; Reviewed
Probab=24.51 E-value=74 Score=21.71 Aligned_cols=21 Identities=29% Similarity=0.183 Sum_probs=12.8
Q ss_pred CchhhHHHHHHHHHHHHHHHh
Q 040193 1 MAKLSFNNIFVFLLILSAALM 21 (80)
Q Consensus 1 MaK~s~~~~~i~~lvls~~~~ 21 (80)
|+|-..++.+.+.|+||+.++
T Consensus 3 ~~kkl~~~~v~~~l~lg~~sa 23 (170)
T PRK12750 3 LAKKLVLAAVVLPLTLGTASA 23 (170)
T ss_pred hHHHHHHHHHHHHHHHHhhhh
Confidence 565555556667888765443
No 53
>PF11044 TMEMspv1-c74-12: Plectrovirus spv1-c74 ORF 12 transmembrane protein; InterPro: IPR022743 This is a group of proteins expressed by Plectroviruses. The Plectroviruses are single-stranded DNA viruses belonging to the Inoviridae. This entry represents putative transmembrane proteins of unknown function.
Probab=24.23 E-value=1.1e+02 Score=17.00 Aligned_cols=13 Identities=31% Similarity=0.539 Sum_probs=6.4
Q ss_pred HHHHHHHHHHHHH
Q 040193 7 NNIFVFLLILSAA 19 (80)
Q Consensus 7 ~~~~i~~lvls~~ 19 (80)
..||-++++|++|
T Consensus 6 t~iFsvvIil~If 18 (49)
T PF11044_consen 6 TTIFSVVIILGIF 18 (49)
T ss_pred HHHHHHHHHHHHH
Confidence 3445455555553
No 54
>PF08999 SP_C-Propep: Surfactant protein C, N terminal propeptide; InterPro: IPR015091 The N-terminal propeptide of surfactant protein C adopts an alpha-helical structure, with turn and extended regions. Its main function is the stabilisation of metastable surfactant protein C (SP-C), since the latter can irreversibly transform from its native alpha-helical structure to beta-sheet aggregates and form amyloid-like fibrils. The correct intracellular trafficking of proSP-C has also been reported to depend on the propeptide []. ; PDB: 1SPF_A 2YAD_F.
Probab=23.47 E-value=1.1e+02 Score=19.02 Aligned_cols=15 Identities=27% Similarity=0.392 Sum_probs=4.2
Q ss_pred HHHHHHhhhhhhccc
Q 040193 15 ILSAALMAVRRVDAQ 29 (80)
Q Consensus 15 vls~~~~~~~~~qg~ 29 (80)
++++.+|+..-+|+.
T Consensus 50 ivg~LLMGLhmsqkH 64 (93)
T PF08999_consen 50 IVGALLMGLHMSQKH 64 (93)
T ss_dssp HHHHHHH--------
T ss_pred HHHHHHHHhhhhhhh
Confidence 336667766667654
No 55
>PF13706 PepSY_TM_3: PepSY-associated TM helix
Probab=22.89 E-value=1.2e+02 Score=15.34 Aligned_cols=14 Identities=29% Similarity=0.812 Sum_probs=7.0
Q ss_pred HHHHHHHHHHHHHh
Q 040193 8 NIFVFLLILSAALM 21 (80)
Q Consensus 8 ~~~i~~lvls~~~~ 21 (80)
.+++++..+++.++
T Consensus 16 g~~l~~~~~tG~~~ 29 (37)
T PF13706_consen 16 GLLLFVIFLTGAVM 29 (37)
T ss_pred HHHHHHHHHHhHHH
Confidence 44444555555444
No 56
>CHL00031 psbT photosystem II protein T
Probab=22.84 E-value=1.3e+02 Score=15.53 Aligned_cols=13 Identities=15% Similarity=0.291 Sum_probs=7.5
Q ss_pred HHHHHHHHHHHHH
Q 040193 6 FNNIFVFLLILSA 18 (80)
Q Consensus 6 ~~~~~i~~lvls~ 18 (80)
+.|.|+++.-|++
T Consensus 4 lvYtfll~~tlgi 16 (33)
T CHL00031 4 LVYTFLLVSTLGI 16 (33)
T ss_pred hHHHHHHHHHHHH
Confidence 4566666665554
No 57
>PRK11875 psbT photosystem II reaction center protein T; Reviewed
Probab=22.77 E-value=1.2e+02 Score=15.36 Aligned_cols=13 Identities=31% Similarity=0.562 Sum_probs=7.5
Q ss_pred HHHHHHHHHHHHH
Q 040193 6 FNNIFVFLLILSA 18 (80)
Q Consensus 6 ~~~~~i~~lvls~ 18 (80)
+.|.|+++..|++
T Consensus 4 l~Ytfll~~tlgi 16 (31)
T PRK11875 4 FAYILILTLALVT 16 (31)
T ss_pred HHHHHHHHHHHHH
Confidence 4566666655554
No 58
>PF02468 PsbN: Photosystem II reaction centre N protein (psbN); InterPro: IPR003398 Oxygenic photosynthesis uses two multi-subunit photosystems (I and II) located in the cell membranes of cyanobacteria and in the thylakoid membranes of chloroplasts in plants and algae. Photosystem II (PSII) has a P680 reaction centre containing chlorophyll 'a' that uses light energy to carry out the oxidation (splitting) of water molecules, and to produce ATP via a proton pump. Photosystem I (PSI) has a P700 reaction centre containing chlorophyll that takes the electron and associated hydrogen donated from PSII to reduce NADP+ to NADPH. Both ATP and NADPH are subsequently used in the light-independent reactions to convert carbon dioxide to glucose using the hydrogen atom extracted from water by PSII, releasing oxygen as a by-product. PSII is a multisubunit protein-pigment complex containing polypeptides both intrinsic and extrinsic to the photosynthetic membrane [, ]. Within the core of the complex, the chlorophyll and beta-carotene pigments are mainly bound to the antenna proteins CP43 (PsbC) and CP47 (PsbB), which pass the excitation energy on to the reaction centre proteins D1 (Qb, PsbA) and D2 (Qa, PsbD) that bind all the redox-active cofactors involved in the energy conversion process. The PSII oxygen-evolving complex (OEC) oxidises water to provide protons for use by PSI, and consists of OEE1 (PsbO), OEE2 (PsbP) and OEE3 (PsbQ). The remaining subunits in PSII are of low molecular weight (less than 10 kDa), and are involved in PSII assembly, stabilisation, dimerisation, and photo-protection []. This family represents the low molecular weight transmembrane protein PsbN found in PSII. PsbN may have a role in PSII stability, however its actual function unknown. PsbN does not appear to be essential for photoautotrophic growth or normal PSII function.; GO: 0015979 photosynthesis, 0009523 photosystem II, 0009539 photosystem II reaction center, 0016020 membrane
Probab=22.07 E-value=80 Score=17.17 Aligned_cols=15 Identities=27% Similarity=0.377 Sum_probs=9.3
Q ss_pred hhHHHHHHHHHHHHH
Q 040193 4 LSFNNIFVFLLILSA 18 (80)
Q Consensus 4 ~s~~~~~i~~lvls~ 18 (80)
.+.+.|||..+++|+
T Consensus 4 a~~~~i~i~~~lv~~ 18 (43)
T PF02468_consen 4 ATVLAIFISCLLVSI 18 (43)
T ss_pred eeeHHHHHHHHHHHH
Confidence 345666776776664
No 59
>PHA03066 Hypothetical protein; Provisional
Probab=22.01 E-value=98 Score=20.11 Aligned_cols=18 Identities=22% Similarity=0.395 Sum_probs=11.5
Q ss_pred CchhhHHHHHHHHHHHHH
Q 040193 1 MAKLSFNNIFVFLLILSA 18 (80)
Q Consensus 1 MaK~s~~~~~i~~lvls~ 18 (80)
||-+..++||++.|++.=
T Consensus 1 ~~~~~~l~fFi~Fl~~~Y 18 (110)
T PHA03066 1 ASSLLYLLFFIIFLCISY 18 (110)
T ss_pred CchHHHHHHHHHHHHHHH
Confidence 566666777776666543
No 60
>KOG4455 consensus Uncharacterized conserved protein [Function unknown]
Probab=21.94 E-value=1.2e+02 Score=19.65 Aligned_cols=21 Identities=33% Similarity=0.365 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHhhhhhhccc
Q 040193 7 NNIFVFLLILSAALMAVRRVDAQ 29 (80)
Q Consensus 7 ~~~~i~~lvls~~~~~~~~~qg~ 29 (80)
+..|+.++++++.++ -+.|+|
T Consensus 53 i~Y~l~~~i~~il~~--~K~~~~ 73 (110)
T KOG4455|consen 53 IFYFLSVLILSILLV--LKAGGQ 73 (110)
T ss_pred HHHHHHHHHHHHHHH--HHHCCC
Confidence 334555666666666 357765
No 61
>PF02495 7kD_coat: 7kD viral coat protein; InterPro: IPR003411 This family consists of a 7 kDa coat protein from Carlavirus and Potexvirus [].
Probab=21.58 E-value=1.6e+02 Score=16.33 Aligned_cols=8 Identities=13% Similarity=0.131 Sum_probs=6.9
Q ss_pred cccccccc
Q 040193 31 KRCEEKSN 38 (80)
Q Consensus 31 ~~C~~~i~ 38 (80)
+.|.-+++
T Consensus 25 ~~C~I~It 32 (59)
T PF02495_consen 25 PSCVIVIT 32 (59)
T ss_pred CCcEEEEe
Confidence 79998887
No 62
>PF04068 RLI: Possible Fer4-like domain in RNase L inhibitor, RLI; InterPro: IPR007209 This is a possible metal-binding domain in endoribonuclease RNase L inhibitor. It is found at the N-terminal end of RNase L inhibitor proteins, adjacent to the 4Fe-4S binding domain, fer4, IPR001450 from INTERPRO. Also often found adjacent to IPR007177 from INTERPRO in uncharacterised proteins. The RNase L system plays a major role in the anti-viral and anti-proliferative activities of interferons [], and could possibly play a more general role in the regulation of RNA stability in mammalian cells. Inhibitory activity requires concentration-dependent association of RLI with RNase L [].; PDB: 3J16_B 3BK7_A.
Probab=21.15 E-value=22 Score=18.24 Aligned_cols=16 Identities=25% Similarity=0.586 Sum_probs=8.4
Q ss_pred cc-ccCChhhHHH-HhHh
Q 040193 37 SN-PNCSLEDCRA-KCIN 52 (80)
Q Consensus 37 i~-~~C~~~~C~~-~C~~ 52 (80)
|+ +.||+..|.. .|.+
T Consensus 6 ~d~~~CdPkKCt~~kl~r 23 (35)
T PF04068_consen 6 WDFDQCDPKKCTGKKLIR 23 (35)
T ss_dssp E-CCC--CCCCSS-HHHH
T ss_pred EEcCCCCccccCHHHHHh
Confidence 44 5688777777 6653
No 63
>PLN03207 stomagen; Provisional
Probab=20.93 E-value=1.3e+02 Score=19.49 Aligned_cols=10 Identities=40% Similarity=0.800 Sum_probs=4.6
Q ss_pred HHHHHHHHHH
Q 040193 11 VFLLILSAAL 20 (80)
Q Consensus 11 i~~lvls~~~ 20 (80)
++.|+|+.++
T Consensus 19 l~~llla~~v 28 (113)
T PLN03207 19 LFFLLLGAYV 28 (113)
T ss_pred HHHHHHHHHH
Confidence 3444445443
No 64
>PF14865 Macin: Macin; PDB: 2K35_A 2LN8_A.
Probab=20.75 E-value=1.3e+02 Score=17.39 Aligned_cols=21 Identities=24% Similarity=0.544 Sum_probs=12.3
Q ss_pred hhHHHHhHhhccCCCeeeEEeeCC
Q 040193 44 EDCRAKCINKYINKRGFGECIENG 67 (80)
Q Consensus 44 ~~C~~~C~~k~~~~~G~G~C~~~~ 67 (80)
.+|...|...- .--|.|+..+
T Consensus 22 ~sC~~~Ckc~G---~~gG~C~~~p 42 (59)
T PF14865_consen 22 KSCNDRCKCLG---HDGGECVLSP 42 (59)
T ss_dssp -CCHHHHHTTT----SEEEEEE-C
T ss_pred hHhhHHHHHcC---CCCCceEeCC
Confidence 46777777332 4459999764
No 65
>PF13980 UPF0370: Uncharacterised protein family (UPF0370)
Probab=20.27 E-value=1.1e+02 Score=17.93 Aligned_cols=15 Identities=7% Similarity=0.505 Sum_probs=6.8
Q ss_pred HHHHHHHHHHhhhhh
Q 040193 11 VFLLILSAALMAVRR 25 (80)
Q Consensus 11 i~~lvls~~~~~~~~ 25 (80)
|+++++|+++-|+++
T Consensus 11 iLl~lvG~i~n~iK~ 25 (63)
T PF13980_consen 11 ILLILVGMIINGIKE 25 (63)
T ss_pred HHHHHHHHHHHHHHH
Confidence 334444655443444
No 66
>KOG3950 consensus Gamma/delta sarcoglycan [Cytoskeleton]
Probab=20.25 E-value=1e+02 Score=23.10 Aligned_cols=12 Identities=33% Similarity=0.495 Sum_probs=7.4
Q ss_pred HHHHHHHHHHHH
Q 040193 6 FNNIFVFLLILS 17 (80)
Q Consensus 6 ~~~~~i~~lvls 17 (80)
++|+|+|+|.+.
T Consensus 36 cLY~fvLlL~i~ 47 (292)
T KOG3950|consen 36 CLYTFVLLLMIL 47 (292)
T ss_pred HHHHHHHHHHHH
Confidence 567776666554
No 67
>COG3354 FlaG Putative archaeal flagellar protein G [Cell motility and secretion]
Probab=20.23 E-value=1.4e+02 Score=20.51 Aligned_cols=18 Identities=22% Similarity=0.287 Sum_probs=12.5
Q ss_pred hhHHHHHHHHHHHHHHHh
Q 040193 4 LSFNNIFVFLLILSAALM 21 (80)
Q Consensus 4 ~s~~~~~i~~lvls~~~~ 21 (80)
.|=+.|||..|++++.++
T Consensus 6 ~SeLV~FIaalLiaasva 23 (154)
T COG3354 6 SSELVMFIAALLIAASVA 23 (154)
T ss_pred hhHHHHHHHHHHHHHHHH
Confidence 455678888888866554
No 68
>PF15048 OSTbeta: Organic solute transporter subunit beta protein
Probab=20.22 E-value=1.4e+02 Score=19.79 Aligned_cols=18 Identities=22% Similarity=0.301 Sum_probs=8.9
Q ss_pred hhHHHHHHHHHHHHHHHh
Q 040193 4 LSFNNIFVFLLILSAALM 21 (80)
Q Consensus 4 ~s~~~~~i~~lvls~~~~ 21 (80)
.|.+++-.+++++|.++.
T Consensus 37 ysiL~Ls~vvlvi~~~LL 54 (125)
T PF15048_consen 37 YSILALSFVVLVISFFLL 54 (125)
T ss_pred hHHHHHHHHHHHHHHHHH
Confidence 344444445555555544
No 69
>TIGR03063 srtB_target sortase B cell surface sorting signal. Two different classes of sorting signal, both analogous to the sortase A signal LPXTG, may be recognized by the sortase SrtB. These are given as NXZTN and NPKXZ. Proteins sorted by this class of sortase are less common than the sortase A and LPXTG system. This model describes a number of cell surface protein C-terminal regions from Gram-positive bacteria that appear to be sortase B (SrtB) sorting signals.
Probab=20.12 E-value=1.4e+02 Score=14.88 Aligned_cols=12 Identities=17% Similarity=0.357 Sum_probs=6.0
Q ss_pred HHHHHHHHHHHH
Q 040193 7 NNIFVFLLILSA 18 (80)
Q Consensus 7 ~~~~i~~lvls~ 18 (80)
+++++++++.|+
T Consensus 10 i~ly~~l~~~s~ 21 (29)
T TIGR03063 10 IGLYAVLFLGSG 21 (29)
T ss_pred HHHHHHHHHHHH
Confidence 355555555443
No 70
>KOG1225 consensus Teneurin-1 and related extracellular matrix proteins, contain EGF-like repeats [Signal transduction mechanisms; Extracellular structures]
Probab=20.11 E-value=33 Score=27.69 Aligned_cols=27 Identities=37% Similarity=0.935 Sum_probs=16.6
Q ss_pred cccccccc-ccCChhhHHHHhHhhccCCCeeeEEe
Q 040193 31 KRCEEKSN-PNCSLEDCRAKCINKYINKRGFGECI 64 (80)
Q Consensus 31 ~~C~~~i~-~~C~~~~C~~~C~~k~~~~~G~G~C~ 64 (80)
=.|++-+. +.|+...|-+.|. |.|.|+
T Consensus 298 CiC~~g~~G~dCs~~~cpadC~-------g~G~Ci 325 (525)
T KOG1225|consen 298 CICNPGYSGKDCSIRRCPADCS-------GHGKCI 325 (525)
T ss_pred eecCCCccccccccccCCccCC-------CCCccc
Confidence 35666666 6677766666664 446666
Done!