BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 040194
(138 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1FK0|A Chain A, Structural Basis Of Non-Specific Lipid Binding In Maize
Lipid-Transfer Protein Complexes With Capric Acid
Revealed By High-Resolution X-Ray Crystallography
pdb|1FK1|A Chain A, Structural Basis Of Non-Specific Lipid Binding In Maize
Lipid-Transfer Protein Complexes With Lauric Acid
Revealed By High-Resolution X-Ray Crystallography
pdb|1FK2|A Chain A, Structural Basis Of Non-Specific Lipid Binding In Maize
Lipid-Transfer Protein Complexes With Myristic Acid
Revealed By High-Resolution X-Ray Crystallography
pdb|1FK3|A Chain A, Structural Basis Of Non-Specific Lipid Binding In Maize
Lipid-Transfer Protein Complexes With Palmitoleic Acid
Revealed By High-Resolution X-Ray Crystallography
pdb|1FK4|A Chain A, Structural Basis Of Non-Specific Lipid Binding In Maize
Lipid-Transfer Protein Complexes With Stearic Acid
Revealed By High-Resolution X-Ray Crystallography
pdb|1FK5|A Chain A, Structural Basis Of Non-Specific Lipid Binding In Maize
Lipid-Transfer Protein Complexes With Oleic Acid
Revealed By High-Resolution X-Ray Crystallography
pdb|1FK6|A Chain A, Structural Basis Of Non-Specific Lipid Binding In Maize
Lipid-Transfer Protein Complexes With Alpha-Linolenic
Acid Revealed By High-Resolution X-Ray Crystallography
pdb|1FK7|A Chain A, Structural Basis Of Non-Specific Lipid Binding In Maize
Lipid-Transfer Protein Complexes With Ricinoleic Acid
Revealed By High-Resolution X-Ray Crystallography
pdb|1AFH|A Chain A, Lipid Transfer Protein From Maize Seedlings, Nmr, 15
Structures
pdb|1MZL|A Chain A, Maize Nonspecific Lipid Transfer Protein
pdb|1MZM|A Chain A, Maize Nonspecific Lipid Transfer Protein Complexed With
Palmitate
Length = 93
Score = 72.4 bits (176), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 30/93 (32%), Positives = 48/93 (51%), Gaps = 1/93 (1%)
Query: 43 VECHKVEKRFAPCLHYIKGKSKHPSKDCCRGVKKISKHVKTKADKKALCKCIQRCLRGVD 102
+ C +V APC+ Y +G+ PS CC GV+ ++ +T AD++A C C++ GV
Sbjct: 2 ISCGQVASAIAPCISYARGQGSGPSAGCCSGVRSLNNAARTTADRRAACNCLKNAAAGVS 61
Query: 103 HYAKSCIPSIPKKCGINFTLPPVDAKTKCSKIT 135
SIP KCG++ + T CS++
Sbjct: 62 GLNAGNAASIPSKCGVSIPY-TISTSTDCSRVN 93
>pdb|1UVA|A Chain A, Lipid Binding In Rice Nonspecific Lipid Transfer Protein-1
Complexes From Oryza Sativa
pdb|1UVB|A Chain A, Lipid Binding In Rice Nonspecific Lipid Transfer Protein-1
Complexes From Oryza Sativa
pdb|1UVC|A Chain A, Lipid Binding In Rice Nonspecific Lipid Transfer Protein-1
Complexes From Oryza Sativa
pdb|1UVC|B Chain B, Lipid Binding In Rice Nonspecific Lipid Transfer Protein-1
Complexes From Oryza Sativa
pdb|1BV2|A Chain A, Lipid Transfer Protein From Rice Seeds, Nmr, 14 Structures
pdb|1RZL|A Chain A, Rice Nonspecific Lipid Transfer Protein
Length = 91
Score = 62.4 bits (150), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 29/93 (31%), Positives = 46/93 (49%), Gaps = 2/93 (2%)
Query: 43 VECHKVEKRFAPCLHYIKGKSKHPSKDCCRGVKKISKHVKTKADKKALCKCIQRCLRGVD 102
+ C +V PCL Y +G + PS CC GV+ + T AD++ C C++ RG+
Sbjct: 1 ITCGQVNSAVGPCLTYARGGA-GPSAACCSGVRSLKAAASTTADRRTACNCLKNAARGIK 59
Query: 103 HYAKSCIPSIPKKCGINFTLPPVDAKTKCSKIT 135
SIP KCG++ + A CS+++
Sbjct: 60 GLNAGNAASIPSKCGVSVPY-TISASIDCSRVS 91
>pdb|1BE2|A Chain A, Lipid Transfer Protein Complexed With Palmitate, Nmr, 10
Structures
pdb|1JTB|A Chain A, Lipid Transfer Protein Complexed With Palmitoyl Coenzyme
A, Nmr, 16 Structures
pdb|1LIP|A Chain A, Barley Lipid Transfer Protein (Nmr, 4 Structures)
Length = 91
Score = 62.0 bits (149), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 52/94 (55%), Gaps = 6/94 (6%)
Query: 43 VECHKVEKRFAPCLHYIKGKSKHPSKDCCRGVKKISKHVKTKADKKALCKCIQRCLRGVD 102
+ C +V+ + PCL Y++G PS +CC GV+ + ++ D++ +C C++ RG+
Sbjct: 1 LNCGQVDSKMKPCLTYVQG-GPGPSGECCNGVRDLHNQAQSSGDRQTVCNCLKGIARGIH 59
Query: 103 HYAKSCIPSIPKKCGIN--FTLPPVDAKTKCSKI 134
+ + SIP KC +N +T+ P CS+I
Sbjct: 60 NLNLNNAASIPSKCNVNVPYTISP---DIDCSRI 90
>pdb|1MID|A Chain A, Non-Specific Lipid Transfer Protein 1 From Barley In
Complex With L-Alfa-Lysophosphatidylcholine, Laudoyl
pdb|3GSH|A Chain A, Three-Dimensional Structure Of A Post Translational
Modified Barley Ltp1
pdb|3GSH|B Chain B, Three-Dimensional Structure Of A Post Translational
Modified Barley Ltp1
Length = 91
Score = 62.0 bits (149), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 52/94 (55%), Gaps = 6/94 (6%)
Query: 43 VECHKVEKRFAPCLHYIKGKSKHPSKDCCRGVKKISKHVKTKADKKALCKCIQRCLRGVD 102
+ C +V+ + PCL Y++G PS +CC GV+ + ++ D++ +C C++ RG+
Sbjct: 1 LNCGQVDSKMKPCLTYVQG-GPGPSGECCNGVRDLHNQAQSSGDRQTVCNCLKGIARGIH 59
Query: 103 HYAKSCIPSIPKKCGIN--FTLPPVDAKTKCSKI 134
+ + SIP KC +N +T+ P CS+I
Sbjct: 60 NLNLNNAASIPSKCNVNVPYTISP---DIDCSRI 90
>pdb|1BWO|A Chain A, The Crystal Structure Of Wheat Non-Specific Transfer
Protein Complexed With Two Molecules Of Phospholipid At
2.1 A Resolution
pdb|1BWO|B Chain B, The Crystal Structure Of Wheat Non-Specific Transfer
Protein Complexed With Two Molecules Of Phospholipid At
2.1 A Resolution
pdb|1GH1|A Chain A, Nmr Structures Of Wheat Nonspecific Lipid Transfer Protein
Length = 90
Score = 61.6 bits (148), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 50/92 (54%), Gaps = 2/92 (2%)
Query: 43 VECHKVEKRFAPCLHYIKGKSKHPSKDCCRGVKKISKHVKTKADKKALCKCIQRCLRGVD 102
++C V+ PCL Y++G PS CC GVK + ++++D+++ C C++ RG+
Sbjct: 1 IDCGHVDSLVRPCLSYVQG-GPGPSGQCCDGVKNLHNQARSQSDRQSACNCLKGIARGIH 59
Query: 103 HYAKSCIPSIPKKCGINFTLPPVDAKTKCSKI 134
+ + SIP KCG+N + CS++
Sbjct: 60 NLNEDNARSIPPKCGVNLPY-TISLNIDCSRV 90
>pdb|1CZ2|A Chain A, Solution Structure Of Wheat Ns-Ltp Complexed With
Prostaglandin B2
Length = 90
Score = 60.5 bits (145), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 49/91 (53%), Gaps = 2/91 (2%)
Query: 44 ECHKVEKRFAPCLHYIKGKSKHPSKDCCRGVKKISKHVKTKADKKALCKCIQRCLRGVDH 103
+C V+ PCL Y++G PS CC GVK + ++++D+++ C C++ RG+ +
Sbjct: 2 DCGHVDSLVRPCLSYVQG-GPGPSGQCCDGVKNLHNQARSQSDRQSACNCLKGIARGIHN 60
Query: 104 YAKSCIPSIPKKCGINFTLPPVDAKTKCSKI 134
+ SIP KCG+N + CS++
Sbjct: 61 LNEDNARSIPPKCGVNLPY-TISLNIDCSRV 90
>pdb|2LJO|A Chain A, 3d Solution Structure Of Lipid Transfer Protein Lc-Ltp2
Length = 93
Score = 55.5 bits (132), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 38/78 (48%), Gaps = 1/78 (1%)
Query: 43 VECHKVEKRFAPCLHYIKGKSKHPSKDCCRGVKKISKHVKTKADKKALCKCIQRCLRGVD 102
+ C V +PCL Y+ G PS CC GVKK+ T D++A C C++ +
Sbjct: 2 ISCGAVTSDLSPCLTYLTG-GPGPSPQCCGGVKKLLAAANTTPDRQAACNCLKSAAGSIT 60
Query: 103 HYAKSCIPSIPKKCGINF 120
+ ++P KCG+N
Sbjct: 61 KLNTNNAAALPGKCGVNI 78
>pdb|2ALG|A Chain A, Crystal Structure Of Peach Pru P3, The Prototypic Member
Of The Family Of Plant Non-Specific Lipid Transfer
Protein Pan-Allergens
pdb|2ALG|B Chain B, Crystal Structure Of Peach Pru P3, The Prototypic Member
Of The Family Of Plant Non-Specific Lipid Transfer
Protein Pan-Allergens
pdb|2B5S|A Chain A, Crystal Structure Of Peach Pru P3, The Prototypic Member
Of The Family Of Plant Non-Specific Lipid Transfer
Protein Pan-Allergens
pdb|2B5S|B Chain B, Crystal Structure Of Peach Pru P3, The Prototypic Member
Of The Family Of Plant Non-Specific Lipid Transfer
Protein Pan-Allergens
Length = 92
Score = 55.1 bits (131), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 24/92 (26%), Positives = 47/92 (51%), Gaps = 2/92 (2%)
Query: 43 VECHKVEKRFAPCLHYIKGKSKHPSKDCCRGVKKISKHVKTKADKKALCKCIQRCLRGVD 102
+ C +V APC+ Y++G P CC G++ ++ +T D++A C C+++ V
Sbjct: 2 ITCGQVSSSLAPCIPYVRGGGAVPPA-CCNGIRNVNNLARTTPDRQAACNCLKQLSASVP 60
Query: 103 HYAKSCIPSIPKKCGINFTLPPVDAKTKCSKI 134
+ ++P KCG++ + A T C+ +
Sbjct: 61 GVNPNNAAALPGKCGVSIPY-KISASTNCATV 91
>pdb|1SIY|A Chain A, Nmr Structure Of Mung Bean Non-Specific Lipid Transfer
Protein 1
Length = 91
Score = 50.8 bits (120), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 47/94 (50%), Gaps = 4/94 (4%)
Query: 43 VECHKVEKRFAPCLHYI-KGKSKHPSKDCCRGVKKISKHVKTKADKKALCKCIQRCLRGV 101
+ C +V+ A C+ ++ KG PS CC GVK I +T AD++A+C C++ V
Sbjct: 1 MTCGQVQGNLAQCIGFLQKGGVVPPS--CCTGVKNILNSSRTTADRRAVCSCLKAAAGAV 58
Query: 102 DHYAKSCIPSIPKKCGINFTLPPVDAKTKCSKIT 135
+ ++P KCG+N + T C+ I
Sbjct: 59 RGINPNNAEALPGKCGVNIPY-KISTSTNCNSIN 91
>pdb|1T12|A Chain A, Solution Structure Of A New Ltp1
Length = 91
Score = 50.1 bits (118), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 41/92 (44%), Gaps = 3/92 (3%)
Query: 43 VECHKVEKRFAPCLHYIKGKSKHPSKDCCRGVKKISKHVKTKADKKALCKCIQRCLRGVD 102
+ C +V APCL Y++ + P CC GVK + +T D++ C C++ +
Sbjct: 2 ITCGQVTSNLAPCLAYLR--NTGPLGRCCGGVKALVNSARTTEDRQIACTCLKSAAGAIS 59
Query: 103 HYAKSCIPSIPKKCGINFTLPPVDAKTKCSKI 134
+P CG+N + T CSK+
Sbjct: 60 GINLGKAAGLPSTCGVNIPY-KISPSTDCSKV 90
>pdb|1PFX|L Chain L, Porcine Factor Ixa
Length = 146
Score = 26.9 bits (58), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 19/39 (48%), Gaps = 2/39 (5%)
Query: 79 KHVKTKADKKALCKCIQRCLRGVDHYAKSCIPSIPKKCG 117
+ KT AD K LC C D KSC P++P CG
Sbjct: 97 QFCKTGADSKVLCSCTTGYRLAPDQ--KSCKPAVPFPCG 133
>pdb|1X7A|L Chain L, Porcine Factor Ixa Complexed To 1-{3-[amino(Imino)
Methyl]phenyl}-N-[4-(1h-Benzimidazol-1-Yl)-2-
Fluorophenyl]-
3-(Trifluoromethyl)-1h-Pyrazole-5-Carboxamide
Length = 146
Score = 26.9 bits (58), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 18/36 (50%), Gaps = 2/36 (5%)
Query: 82 KTKADKKALCKCIQRCLRGVDHYAKSCIPSIPKKCG 117
KT AD K LC C D KSC P++P CG
Sbjct: 100 KTGADSKVLCSCTTGYRLAPDQ--KSCKPAVPFPCG 133
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.324 0.137 0.443
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,655,942
Number of Sequences: 62578
Number of extensions: 121522
Number of successful extensions: 359
Number of sequences better than 100.0: 25
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 336
Number of HSP's gapped (non-prelim): 25
length of query: 138
length of database: 14,973,337
effective HSP length: 89
effective length of query: 49
effective length of database: 9,403,895
effective search space: 460790855
effective search space used: 460790855
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 46 (22.3 bits)