Query 040194
Match_columns 138
No_of_seqs 119 out of 747
Neff 6.1
Searched_HMMs 46136
Date Fri Mar 29 06:01:56 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040194.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/040194hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd01960 nsLTP1 nsLTP1: Non-spe 99.9 7.6E-27 1.7E-31 160.8 3.7 89 43-132 1-89 (89)
2 cd04660 nsLTP_like nsLTP_like: 99.5 1.1E-14 2.5E-19 97.1 2.0 67 45-121 1-69 (73)
3 cd00010 AAI_LTSS AAI_LTSS: Alp 99.4 4.8E-14 1E-18 90.7 1.7 62 52-118 1-63 (63)
4 PF14368 LTP_2: Probable lipid 99.3 3.1E-13 6.8E-18 92.7 -1.1 71 42-122 19-93 (96)
5 cd01959 nsLTP2 nsLTP2: Non-spe 99.1 4.4E-11 9.6E-16 78.8 2.5 58 50-121 4-64 (66)
6 PF00234 Tryp_alpha_amyl: Prot 98.9 2.4E-11 5.3E-16 82.8 -5.3 65 50-122 13-87 (90)
7 smart00499 AAI Plant lipid tra 98.9 1.2E-09 2.7E-14 70.9 2.5 69 45-122 1-76 (79)
8 PF07172 GRP: Glycine rich pro 59.6 8.6 0.00019 26.8 2.3 10 1-10 1-10 (95)
9 cd01958 HPS_like HPS_like: Hyd 56.2 10 0.00022 26.1 2.2 67 50-122 9-81 (85)
10 PF14547 Hydrophob_seed: Hydro 55.5 3.1 6.8E-05 28.6 -0.5 67 50-122 7-80 (85)
11 PF10717 ODV-E18: Occlusion-de 38.8 68 0.0015 22.1 4.0 12 8-19 32-43 (85)
12 PRK10081 entericidin B membran 34.2 45 0.00098 20.6 2.4 16 1-16 1-16 (48)
13 PRK09810 entericidin A; Provis 24.6 70 0.0015 19.1 1.9 9 1-9 1-9 (41)
14 PF05617 Prolamin_like: Prolam 20.7 1.1E+02 0.0025 19.1 2.6 19 61-79 23-41 (70)
15 PRK15396 murein lipoprotein; P 20.5 1.2E+02 0.0025 20.5 2.6 23 1-25 1-23 (78)
No 1
>cd01960 nsLTP1 nsLTP1: Non-specific lipid-transfer protein type 1 (nsLTP1) subfamily; Plant nsLTPs are small, soluble proteins that facilitate the transfer of fatty acids, phospholipids, glycolipids, and steroids between membranes. In addition to lipid transport and assembly, nsLTPs also play a key role in the defense of plants against pathogens. There are two closely-related types of nsLTPs, types 1 and 2, which differ in protein sequence, molecular weight, and biological properties. nsLTPs contain an internal hydrophobic cavity, which serves as the binding site for lipids. The hydrophobic cavity accommodates various fatty acid ligands containing from ten to 18 carbon atoms. In general, the cavity is larger in nsLTP1 than in nsLTP2. nsLTP1 proteins are located in extracellular layers and in vacuolar structures. They may be involved in the formation of cutin layers on plant surfaces by transporting cutin monomers. Many nsLTP1 proteins have been characterized as allergens in humans.
Probab=99.93 E-value=7.6e-27 Score=160.84 Aligned_cols=89 Identities=35% Similarity=0.817 Sum_probs=83.5
Q ss_pred CCChhhhccccCchHHhcCCCCCchHHhHHHHHhhhhhhccccCccccceeecccccCCCCCCcCcccccccccCcCCCC
Q 040194 43 VECHKVEKRFAPCLHYIKGKSKHPSKDCCRGVKKISKHVKTKADKKALCKCIQRCLRGVDHYAKSCIPSIPKKCGINFTL 122 (138)
Q Consensus 43 ~~C~~v~~~L~pCl~yl~g~~~~Ps~~CC~~vk~l~~~a~T~~dr~~~C~Cl~~~~~~~~~in~~~a~~LP~~Cgv~ip~ 122 (138)
++|.++...|.||++|++|++..|+++||+++++|++.++|+.||+.+|+|+++...++++||.+++++||++||++++|
T Consensus 1 ~~C~~v~~~l~~C~~y~~g~~~~Ps~~CC~~v~~l~~~~~t~~~~~~~C~C~~~~~~~~~~i~~~~a~~LP~~C~v~~~~ 80 (89)
T cd01960 1 ISCGQVTSLLAPCLGYLTGGGPAPSPACCSGVKSLNGLAKTTADRQAACNCLKSAAAGISGLNPGRAAGLPGKCGVSIPY 80 (89)
T ss_pred CCHHHHHhhHHhHHHHHhCCCCCCChHHhhhhHHHhhccCCCCchhhhhhcccccccccCCCCHHHHHhChHhcccCCCC
Confidence 46999999999999999988778999999999999999999999999999999887777669999999999999999999
Q ss_pred CCCCCCcCCC
Q 040194 123 PPVDAKTKCS 132 (138)
Q Consensus 123 ~~is~~~DC~ 132 (138)
+|+++|||+
T Consensus 81 -~i~~~~dC~ 89 (89)
T cd01960 81 -PISPSTDCS 89 (89)
T ss_pred -CCCCCCCCC
Confidence 899999996
No 2
>cd04660 nsLTP_like nsLTP_like: Non-specific lipid-transfer protein (nsLTP)-like subfamily; composed of predominantly uncharacterized proteins with similarity to nsLTPs, including Medicago truncatula MtN5, the root-specific Phaseolus vulgaris PVR3, Antirrhinum majus FIL1, and Lilium longiflorum LIM3. Plant nsLTPs are small, soluble proteins that facilitate the transfer of fatty acids, phospholipids, glycolipids, and steroids between membranes. The MtN5 gene is induced during root nodule development. FIL1 is thought to be important in petal and stamen formation. The LIM3 gene is induced during the early prophase stage of meiosis in lily microsporocytes.
Probab=99.48 E-value=1.1e-14 Score=97.08 Aligned_cols=67 Identities=22% Similarity=0.567 Sum_probs=53.9
Q ss_pred ChhhhccccCchHHhcCCC--CCchHHhHHHHHhhhhhhccccCccccceeecccccCCCCCCcCcccccccccCcCCC
Q 040194 45 CHKVEKRFAPCLHYIKGKS--KHPSKDCCRGVKKISKHVKTKADKKALCKCIQRCLRGVDHYAKSCIPSIPKKCGINFT 121 (138)
Q Consensus 45 C~~v~~~L~pCl~yl~g~~--~~Ps~~CC~~vk~l~~~a~T~~dr~~~C~Cl~~~~~~~~~in~~~a~~LP~~Cgv~ip 121 (138)
|+.....|.||++|+++++ ..|++.||++||+++ ++ |+|.+.....++.||.++|++||++|||++|
T Consensus 1 C~~~~~~L~~C~~yl~~~~~~~~Ps~~CC~~vk~~~--------~~--C~C~~~~~~~~~~i~~~~a~~Lp~~Cgv~~p 69 (73)
T cd04660 1 CNMDLDLLAECQPYVTGPNPPPPPSRECCAALRRAD--------LP--CLCRYKTSLVLQIIDPDKAVYLPAKCGLPLP 69 (73)
T ss_pred CCCCHHHHHHHHHHHcCCCCCCCCCHHHHHHHHcCC--------cC--CEeeccCCCcccccCHHHHHHHHHHcCCCCC
Confidence 4554578999999999876 369999999999842 33 9998765555556999999999999999876
No 3
>cd00010 AAI_LTSS AAI_LTSS: Alpha-Amylase Inhibitors (AAI), Lipid Transfer (LT) and Seed Storage (SS) Protein family; a protein family unique to higher plants that includes cereal-type alpha-amylase inhibitors, lipid transfer proteins, seed storage proteins, and similar proteins. Proteins in this family are known to play important roles, in defending plants from insects and pathogens, lipid transport between intracellular membranes, and nutrient storage. Many proteins of this family have been identified as allergens in humans. These proteins contain a common pattern of eight cysteines that form four disulfide bridges.
Probab=99.42 E-value=4.8e-14 Score=90.70 Aligned_cols=62 Identities=32% Similarity=0.742 Sum_probs=51.8
Q ss_pred ccCchHHhcCCCCCchHHhHHHHHhhhhhhccccCccccceeecccccCCCCC-CcCcccccccccCc
Q 040194 52 FAPCLHYIKGKSKHPSKDCCRGVKKISKHVKTKADKKALCKCIQRCLRGVDHY-AKSCIPSIPKKCGI 118 (138)
Q Consensus 52 L~pCl~yl~g~~~~Ps~~CC~~vk~l~~~a~T~~dr~~~C~Cl~~~~~~~~~i-n~~~a~~LP~~Cgv 118 (138)
|.||++|++|++..|+.+||++++++.+. |++++|.++++......++ |.+++..||++|||
T Consensus 1 L~~C~~y~~~~~~~Ps~~CC~~l~~~~~~-----~~~ClC~~~~~~~~~~~~~~~~~~a~~LP~~Cgv 63 (63)
T cd00010 1 LAPCLSYLTGGATAPPSDCCSGLKSVVKS-----DPKCLCAALNGPGASLLGLKNATRALALPAACGL 63 (63)
T ss_pred CcchHHHHcCCCCCCChHHHHHHHHHHhc-----ChhhHHHHHcCccccccCcccHHHHHhchHhcCC
Confidence 67999999988678999999999998753 6778888888765554345 79999999999996
No 4
>PF14368 LTP_2: Probable lipid transfer; PDB: 2RKN_A 1N89_A 1TUK_A.
Probab=99.28 E-value=3.1e-13 Score=92.70 Aligned_cols=71 Identities=27% Similarity=0.623 Sum_probs=45.5
Q ss_pred CCCChhhhccccCc---hHHhcCCCCCchHHhHHHHHhhhhhhccccCccccceeecccc-cCCCCCCcCcccccccccC
Q 040194 42 RVECHKVEKRFAPC---LHYIKGKSKHPSKDCCRGVKKISKHVKTKADKKALCKCIQRCL-RGVDHYAKSCIPSIPKKCG 117 (138)
Q Consensus 42 ~~~C~~v~~~L~pC---l~yl~g~~~~Ps~~CC~~vk~l~~~a~T~~dr~~~C~Cl~~~~-~~~~~in~~~a~~LP~~Cg 117 (138)
..+|. ..|.|| +.|++++ ..|+++||+++|++.+ .|+.++|..+++.. .++ +||.+++..||++||
T Consensus 19 ~~~c~---~~l~~c~~~~~~~~~~-~~Ps~~CC~~l~~~~~-----~~~~ClC~~~~~~~~~~~-~in~~~a~~Lp~~Cg 88 (96)
T PF14368_consen 19 CCSCA---NSLLPCCPCLCYVTGG-PAPSAACCSALKSVVQ-----ADPPCLCQLLNSPGAPGF-GINVTRALALPAACG 88 (96)
T ss_dssp TTB-H---CCCCHH--HHHHHCC------HHHHHHHCC---------HCCHHHCCCC-CCHCHH-CCTCHHHHHHHHHCT
T ss_pred cchhH---HHHhccccchhccCCC-CCCCHHHHHHHHHhcc-----CCCCCHHHhcCccccccC-CcCHHHHHHHHHHcC
Confidence 45664 346666 7888855 4899999999999853 24566666676654 444 799999999999999
Q ss_pred cCCCC
Q 040194 118 INFTL 122 (138)
Q Consensus 118 v~ip~ 122 (138)
++++.
T Consensus 89 ~~~~~ 93 (96)
T PF14368_consen 89 VPVPP 93 (96)
T ss_dssp SS-S-
T ss_pred CCCCC
Confidence 98764
No 5
>cd01959 nsLTP2 nsLTP2: Non-specific lipid-transfer protein type 2 (nsLTP2) subfamily; Plant nsLTPs are small, soluble proteins that facilitate the transfer of fatty acids, phospholipids, glycolipids, and steroids between membranes. In addition to lipid transport and assembly, nsLTPs also play a key role in the defense of plants against pathogens. There are two closely-related types of nsLTPs, types 1 and 2, which differ in protein sequence, molecular weight, and biological properties. nsLTPs contain an internal hydrophobic cavity, which serves as the binding site for lipids. nsLTP2 can bind lipids and sterols. Structure studies of rice nsLTPs show that the plasticity of the hydrophobic cavity is an important factor in ligand binding. The flexibility of the sLTP2 cavity allows its binding to rigid sterol molecules, whereas nsLTP1 cannot bind sterols despite its larger cavity size. The resulting nsLTP2/sterol complexes may bind to receptors that trigger defense responses. nsLTP2 gene exp
Probab=99.10 E-value=4.4e-11 Score=78.85 Aligned_cols=58 Identities=28% Similarity=0.627 Sum_probs=46.5
Q ss_pred ccccCchHHhcCCCCCchHHhHHHHHhhhhhhccccCccccceeec--cc-ccCCCCCCcCcccccccccCcCCC
Q 040194 50 KRFAPCLHYIKGKSKHPSKDCCRGVKKISKHVKTKADKKALCKCIQ--RC-LRGVDHYAKSCIPSIPKKCGINFT 121 (138)
Q Consensus 50 ~~L~pCl~yl~g~~~~Ps~~CC~~vk~l~~~a~T~~dr~~~C~Cl~--~~-~~~~~~in~~~a~~LP~~Cgv~ip 121 (138)
+.|.+|++|++++. .||++||+.+|+ +..|+|.. +. ..+| ||.++|++||++|||++|
T Consensus 4 ~~L~~C~~ai~~~~-~Ps~~CC~~Lk~-----------~~~CLC~y~~~p~l~~~--i~~~~A~~l~~~Cgv~~P 64 (66)
T cd01959 4 TQLSPCLPAILGGS-PPSAACCAKLKE-----------QQSCLCQYAKNPSLKQY--VNSPNARKVLAACGVPYP 64 (66)
T ss_pred hhcccCHHHHhCCC-CCCHHHHHHHhc-----------CCCCeeeeecCccHHhh--cCcHHHHHHHHHcCCCCC
Confidence 57999999999764 899999999998 12577754 32 2333 999999999999999976
No 6
>PF00234 Tryp_alpha_amyl: Protease inhibitor/seed storage/LTP family This is a small subfamily; InterPro: IPR003612 This domain is found is several proteins, including plant lipid transfer proteins [], seed storage proteins [] and trypsin-alpha amylase inhibitors [, ]. The domain forms a four-helical bundle in a right-handed superhelix with a folded leaf topology, which is stabilised by disulphide bonds, and which has an internal cavity. More information about this protein can be found at Protein of the Month: alpha-Amylase [].; PDB: 1BFA_A 1BEA_A 1MID_A 1BE2_A 1LIP_A 3GSH_A 1JTB_A 1UVC_B 1BV2_A 1UVB_A ....
Probab=98.88 E-value=2.4e-11 Score=82.81 Aligned_cols=65 Identities=25% Similarity=0.700 Sum_probs=52.0
Q ss_pred ccccCchHHhcCCCCCchHHhHHHHHhhhhhhccccCccccceeecccccCC----------CCCCcCcccccccccCcC
Q 040194 50 KRFAPCLHYIKGKSKHPSKDCCRGVKKISKHVKTKADKKALCKCIQRCLRGV----------DHYAKSCIPSIPKKCGIN 119 (138)
Q Consensus 50 ~~L~pCl~yl~g~~~~Ps~~CC~~vk~l~~~a~T~~dr~~~C~Cl~~~~~~~----------~~in~~~a~~LP~~Cgv~ 119 (138)
..+.+|..|++++...|+.+||++|++|.. ++.|..++..+.+. .+++..+|.+||+.|||.
T Consensus 13 ~~l~~c~~~~~~~~~~~~~~CC~~L~~l~~--------~C~C~~i~~~~~~~~~q~~~~~~~~~~~~~~a~~LP~~C~v~ 84 (90)
T PF00234_consen 13 VRLSPCLPYLQGGCQQPSQQCCQQLRQLDP--------QCRCEAIRQMVRQVIQQQQQGGQEMQIMAQRAQNLPSMCNVS 84 (90)
T ss_dssp SHHHGGHHHHTTSSSHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHSHHCTSTCSHHHHHHHHHHHHHHHHTTSS
T ss_pred ccccccHHHHhcccccchHHHhHHHHHHhH--------HhhCHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHCCCC
Confidence 458999999998766899999999999853 45566666554431 258999999999999999
Q ss_pred CCC
Q 040194 120 FTL 122 (138)
Q Consensus 120 ip~ 122 (138)
++|
T Consensus 85 ~~~ 87 (90)
T PF00234_consen 85 PPY 87 (90)
T ss_dssp SSS
T ss_pred CCC
Confidence 876
No 7
>smart00499 AAI Plant lipid transfer protein / seed storage protein / trypsin-alpha amylase inhibitor domain family.
Probab=98.86 E-value=1.2e-09 Score=70.94 Aligned_cols=69 Identities=29% Similarity=0.728 Sum_probs=52.8
Q ss_pred ChhhhccccCchHHhcCC--CCCchHHhHHHHHhhhhhhccccCccccceeeccc--ccCCCC---CCcCcccccccccC
Q 040194 45 CHKVEKRFAPCLHYIKGK--SKHPSKDCCRGVKKISKHVKTKADKKALCKCIQRC--LRGVDH---YAKSCIPSIPKKCG 117 (138)
Q Consensus 45 C~~v~~~L~pCl~yl~g~--~~~Ps~~CC~~vk~l~~~a~T~~dr~~~C~Cl~~~--~~~~~~---in~~~a~~LP~~Cg 117 (138)
|..+...+.+|++|+++. ...|+.+||++++.+. ...|+|.... ...... ++..++.+||+.||
T Consensus 1 C~~~~~~~~~c~~~~~~~~~~~~p~~~CC~~l~~~~---------~~~C~C~~~~~~~~~~~~~~~~~~~~a~~lp~~C~ 71 (79)
T smart00499 1 CGQVLLQLAPCLSYLTGGSPGAPPSQQCCSQLRGLN---------SAQCRCLALRAAVLGILEIPGVNAQNAASLPSACG 71 (79)
T ss_pred ChhhhhhHHhhHHHHcCCCCCCCCchHHHHHHHHhc---------ccCCcchhhhcccccccchhhhhHHHHHhhHHhcC
Confidence 666777888999999986 4578999999999984 2368887432 222211 59999999999999
Q ss_pred cCCCC
Q 040194 118 INFTL 122 (138)
Q Consensus 118 v~ip~ 122 (138)
+.+++
T Consensus 72 ~~~~~ 76 (79)
T smart00499 72 VPPPY 76 (79)
T ss_pred CCCCC
Confidence 98764
No 8
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=59.63 E-value=8.6 Score=26.83 Aligned_cols=10 Identities=30% Similarity=0.371 Sum_probs=5.0
Q ss_pred CCchhHHHHH
Q 040194 1 MNRPAIVFLV 10 (138)
Q Consensus 1 m~~~~~~~~~ 10 (138)
|.+++..|+.
T Consensus 1 MaSK~~llL~ 10 (95)
T PF07172_consen 1 MASKAFLLLG 10 (95)
T ss_pred CchhHHHHHH
Confidence 6655544433
No 9
>cd01958 HPS_like HPS_like: Hydrophobic Protein from Soybean (HPS)-like subfamily; composed of proteins with similarity to HPS, a small hydrophobic protein with unknown function related to cereal-type alpha-amylase inhibitors and lipid transfer proteins. In addition to HPS, members of this subfamily include a hybrid proline-rich protein (HyPRP) from maize, a dark-inducible protein (LeDI-2) from Lithospermum erythrorhizon, maize ZRP3 protein, and rice RcC3 protein. HyPRP is an embryo-specific protein that contains an N-terminal proline-rich domain and a C-terminal HPS-like cysteine-rich domain. It has been suggested that HyPRP may be involved in the stability and defense of the developing embryo. LeDI-2 is a root-specific protein that may be involved in regulating the biosynthesis of shikonin derivatives in L. erythrorhizon. Maize ZRP3 and rice RcC3 are root-specific proteins whose functions are yet to be determined. It has been reported that ZRP3 largely accumulates in a distinct subset
Probab=56.18 E-value=10 Score=26.15 Aligned_cols=67 Identities=15% Similarity=0.301 Sum_probs=38.8
Q ss_pred ccccCchHHhcCC----CCCchHHhHHHHHhhhhhhccccCccccceeecccccCCC-CCCcCccc-ccccccCcCCCC
Q 040194 50 KRFAPCLHYIKGK----SKHPSKDCCRGVKKISKHVKTKADKKALCKCIQRCLRGVD-HYAKSCIP-SIPKKCGINFTL 122 (138)
Q Consensus 50 ~~L~pCl~yl~g~----~~~Ps~~CC~~vk~l~~~a~T~~dr~~~C~Cl~~~~~~~~-~in~~~a~-~LP~~Cgv~ip~ 122 (138)
.+|.-|..-+... +..|..+||.-++.|.+. | -+.|+|-.--++-++ ++|..... -|-..||-..|.
T Consensus 9 lkLgvCanvL~l~~~~~g~~~~~~CC~ll~GL~dl-----d-AA~CLCtaikan~lgi~~~~pv~l~llln~CGk~~P~ 81 (85)
T cd01958 9 LKLGVCANVLGLSLLLLGTPAVQPCCPLIGGLADL-----D-AAVCLCTAIKANILGISINIPVALSLLLNSCGRNVPP 81 (85)
T ss_pred HHhchhHhhhhccccccCCCccchHHHHHcCchhh-----h-eeeeeeeeeeccccCcccccChhHHHHHHHHcCcCCC
Confidence 3556666665321 236779999999998643 1 257888643333331 24444444 344569987653
No 10
>PF14547 Hydrophob_seed: Hydrophobic seed protein
Probab=55.50 E-value=3.1 Score=28.60 Aligned_cols=67 Identities=15% Similarity=0.402 Sum_probs=39.6
Q ss_pred ccccCchHHhc----CCCCCchHHhHHHHHhhhhhhccccCccccceee--cccccCCCCCCcC-cccccccccCcCCCC
Q 040194 50 KRFAPCLHYIK----GKSKHPSKDCCRGVKKISKHVKTKADKKALCKCI--QRCLRGVDHYAKS-CIPSIPKKCGINFTL 122 (138)
Q Consensus 50 ~~L~pCl~yl~----g~~~~Ps~~CC~~vk~l~~~a~T~~dr~~~C~Cl--~~~~~~~~~in~~-~a~~LP~~Cgv~ip~ 122 (138)
.+|.-|...+. ..+..+..+||.-++.|.+. --+.|+|. |...-+.-++|.. ....|-..||-.+|.
T Consensus 7 lkLgvC~~vL~l~~~~~g~~~~~~CC~li~gL~d~------~AA~CLC~aika~vlg~i~~~ipv~l~~lln~CGk~~p~ 80 (85)
T PF14547_consen 7 LKLGVCANVLGLVNLVIGNPPRQPCCSLIAGLADL------DAAVCLCTAIKANVLGLINVNIPVALNLLLNACGKTVPS 80 (85)
T ss_pred hhhhhhhhhhhhhccccCCCCCCCcChHHhCcccc------hHHHHHHHHHhhhcccccccccccHHHHHHHHhCCcCcC
Confidence 35677777771 11235789999999998642 12579985 4222231134443 344667779987553
No 11
>PF10717 ODV-E18: Occlusion-derived virus envelope protein ODV-E18; InterPro: IPR019655 Baculovirus occlusion-derived virus (ODV) derives its envelope from an intranuclear membrane source. Occlusion-derived viral envelope proteins that are detected in viral-induced intranuclear microvesicles, but not detected in the plasma membrane, cytoplasmic membranes, or the nuclear envelope. This entry represents ODV-E18 protein which is encoded by baculovirus late genes with transcription initiating from a TAAG motif. ODV-E18 exists as a dimer in the ODV envelope, which contains a hydrophobic domain that putatively acts as a target or retention signal for intranuclear microvesicles []. ; GO: 0019031 viral envelope
Probab=38.78 E-value=68 Score=22.12 Aligned_cols=12 Identities=25% Similarity=0.180 Sum_probs=5.6
Q ss_pred HHHHHHHHHHHH
Q 040194 8 FLVVATGLGILS 19 (138)
Q Consensus 8 ~~~~~~~l~~~~ 19 (138)
+++|+++|++++
T Consensus 32 ivLVIIiLlIml 43 (85)
T PF10717_consen 32 IVLVIIILLIML 43 (85)
T ss_pred HHHHHHHHHHHH
Confidence 344444444444
No 12
>PRK10081 entericidin B membrane lipoprotein; Provisional
Probab=34.23 E-value=45 Score=20.61 Aligned_cols=16 Identities=19% Similarity=0.177 Sum_probs=8.9
Q ss_pred CCchhHHHHHHHHHHH
Q 040194 1 MNRPAIVFLVVATGLG 16 (138)
Q Consensus 1 m~~~~~~~~~~~~~l~ 16 (138)
||++.+.++++..++.
T Consensus 1 MmKk~i~~i~~~l~~~ 16 (48)
T PRK10081 1 MVKKTIAAIFSVLVLS 16 (48)
T ss_pred ChHHHHHHHHHHHHHH
Confidence 7777666554444333
No 13
>PRK09810 entericidin A; Provisional
Probab=24.58 E-value=70 Score=19.09 Aligned_cols=9 Identities=33% Similarity=0.516 Sum_probs=5.9
Q ss_pred CCchhHHHH
Q 040194 1 MNRPAIVFL 9 (138)
Q Consensus 1 m~~~~~~~~ 9 (138)
||++.+.++
T Consensus 1 mMkk~~~l~ 9 (41)
T PRK09810 1 MMKRLIVLV 9 (41)
T ss_pred ChHHHHHHH
Confidence 777766655
No 14
>PF05617 Prolamin_like: Prolamin-like; InterPro: IPR008502 This entry consists of several proteins of unknown function found exclusively in Arabidopsis thaliana.
Probab=20.75 E-value=1.1e+02 Score=19.13 Aligned_cols=19 Identities=32% Similarity=0.898 Sum_probs=14.5
Q ss_pred CCCCCchHHhHHHHHhhhh
Q 040194 61 GKSKHPSKDCCRGVKKISK 79 (138)
Q Consensus 61 g~~~~Ps~~CC~~vk~l~~ 79 (138)
|.....+.+||.++.++.+
T Consensus 23 g~~~~i~~~CC~~i~~~g~ 41 (70)
T PF05617_consen 23 GNKKNIGPECCKAINKMGK 41 (70)
T ss_pred CCCCCCChHHHHHHHHHhH
Confidence 4324788999999999764
No 15
>PRK15396 murein lipoprotein; Provisional
Probab=20.52 E-value=1.2e+02 Score=20.52 Aligned_cols=23 Identities=35% Similarity=0.417 Sum_probs=11.3
Q ss_pred CCchhHHHHHHHHHHHHHHhcCCCC
Q 040194 1 MNRPAIVFLVVATGLGILSLSGPAE 25 (138)
Q Consensus 1 m~~~~~~~~~~~~~l~~~~~~~~~~ 25 (138)
|+++++.+..++..+ +.|++.+.
T Consensus 1 m~~~kl~l~av~ls~--~LLaGCAs 23 (78)
T PRK15396 1 MNRTKLVLGAVILGS--TLLAGCSS 23 (78)
T ss_pred CchhHHHHHHHHHHH--HHHHHcCC
Confidence 555555544444433 44555554
Done!