Query 040194
Match_columns 138
No_of_seqs 119 out of 747
Neff 6.1
Searched_HMMs 29240
Date Mon Mar 25 09:16:47 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040194.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/040194hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ljo_A Non-specific lipid-tran 100.0 2.2E-32 7.4E-37 190.3 -1.0 93 42-136 1-93 (93)
2 1afh_A Maize nonspecific lipid 100.0 2.9E-31 1E-35 184.2 0.5 93 42-135 1-93 (93)
3 1t12_A LTP 1, nonspecific lipi 100.0 5.4E-31 1.9E-35 182.3 -1.3 91 42-135 1-91 (91)
4 1bwo_A NS-LTP1, nonspecific li 100.0 7.6E-31 2.6E-35 181.2 -0.8 90 43-134 1-90 (90)
5 1siy_A LTP 1, NS-LTP1, nonspec 100.0 1.5E-30 5.2E-35 179.9 0.2 91 43-135 1-91 (91)
6 2alg_A Non-specific lipid tran 99.9 3.2E-30 1.1E-34 178.6 -2.0 92 42-135 1-92 (92)
7 2rkn_A DIR1 protein, AT5G48485 99.6 5.5E-17 1.9E-21 108.4 -1.4 70 42-122 2-75 (77)
8 1l6h_A LTP2, non-specific lipi 99.4 1.7E-14 5.7E-19 94.7 1.0 63 44-121 2-66 (69)
9 1n89_A Lipid transfer protein; 99.4 1.1E-14 3.8E-19 95.0 -1.4 59 50-121 5-65 (67)
10 3ob4_A Conglutin, maltose ABC 79.7 0.061 2.1E-06 45.1 -4.8 45 68-121 429-485 (500)
11 1sm7_A Recombinant IB pronapin 63.1 1.2 4.2E-05 30.5 -0.5 62 51-120 14-100 (109)
12 1hyp_A Hydrophobic protein fro 38.7 4.6 0.00016 26.6 -0.8 63 51-122 10-73 (80)
13 1pnb_B Napin BNIB; napin IA an 24.2 25 0.00085 22.3 0.9 47 65-121 9-67 (75)
No 1
>2ljo_A Non-specific lipid-transfer protein 2; lipid transport; NMR {Lens culinaris}
Probab=99.97 E-value=2.2e-32 Score=190.30 Aligned_cols=93 Identities=29% Similarity=0.757 Sum_probs=87.5
Q ss_pred CCCChhhhccccCchHHhcCCCCCchHHhHHHHHhhhhhhccccCccccceeecccccCCCCCCcCcccccccccCcCCC
Q 040194 42 RVECHKVEKRFAPCLHYIKGKSKHPSKDCCRGVKKISKHVKTKADKKALCKCIQRCLRGVDHYAKSCIPSIPKKCGINFT 121 (138)
Q Consensus 42 ~~~C~~v~~~L~pCl~yl~g~~~~Ps~~CC~~vk~l~~~a~T~~dr~~~C~Cl~~~~~~~~~in~~~a~~LP~~Cgv~ip 121 (138)
+++|++|...|+||++|++|+. .|++.||+|+++|++.++|+.|||++|+|+++.+..+++||.++|.+||++|||++|
T Consensus 1 AisC~~v~~~L~pCl~Yv~g~~-~p~~~CC~gv~~l~~~a~t~~dr~~~C~clk~~a~~~~~in~~~a~~LP~~CgV~~p 79 (93)
T 2ljo_A 1 AISCGAVTSDLSPCLTYLTGGP-GPSPQCCGGVKKLLAAANTTPDRQAACNCLKSAAGSITKLNTNNAAALPGKCGVNIP 79 (93)
T ss_dssp CCSSHHHHHHHHHHHHHHTTSS-CCCHHHHHHHHHHHHSCCSHHHHHHHHHHHHHHGGGCTTCCHHHHHHHHHHHTCCCS
T ss_pred CCCHHHHHHHHHhHHHHHcCCC-CCCCchhhHHHHHHHHhcCcccHHHHHHhHHhhhhccCCcCHHHHHhhhHhcCCCCC
Confidence 4789999999999999999875 699999999999999999999999999999988777778999999999999999999
Q ss_pred CCCCCCCcCCCCccc
Q 040194 122 LPPVDAKTKCSKITM 136 (138)
Q Consensus 122 ~~~is~~~DC~~i~~ 136 (138)
| +|++++||++|++
T Consensus 80 ~-~Is~~~dC~~v~~ 93 (93)
T 2ljo_A 80 Y-KISTTTNCNTVKF 93 (93)
T ss_dssp S-CCSTTCCGGGCCC
T ss_pred C-CCCCCCCCCCCCC
Confidence 9 9999999999974
No 2
>1afh_A Maize nonspecific lipid transfer protein; lipid-binding protein, molecular modeling,; NMR {Zea mays} SCOP: a.52.1.1 PDB: 1fk0_A* 1fk1_A* 1fk2_A* 1fk3_A* 1fk4_A* 1fk5_A* 1fk6_A* 1fk7_A* 1mzl_A 1mzm_A* 1bv2_A 1rzl_A* 1uva_A* 1uvb_A* 1uvc_A*
Probab=99.96 E-value=2.9e-31 Score=184.18 Aligned_cols=93 Identities=32% Similarity=0.818 Sum_probs=87.3
Q ss_pred CCCChhhhccccCchHHhcCCCCCchHHhHHHHHhhhhhhccccCccccceeecccccCCCCCCcCcccccccccCcCCC
Q 040194 42 RVECHKVEKRFAPCLHYIKGKSKHPSKDCCRGVKKISKHVKTKADKKALCKCIQRCLRGVDHYAKSCIPSIPKKCGINFT 121 (138)
Q Consensus 42 ~~~C~~v~~~L~pCl~yl~g~~~~Ps~~CC~~vk~l~~~a~T~~dr~~~C~Cl~~~~~~~~~in~~~a~~LP~~Cgv~ip 121 (138)
+++|+++...|.||++|++|++..|+++||+|||+|+++|+|+.|||..|+|++....++++||.++|++||++|||++|
T Consensus 1 a~~C~~v~~~L~pCl~y~~~~~~~Ps~~CC~gv~~l~~~a~t~~dr~~~ClC~~~~~~~~~~in~~~A~~LP~~C~v~~p 80 (93)
T 1afh_A 1 AISCGQVASAIAPCISYARGQGSGPSAGCCSGVRSLNNAARTTADRRAACNCLKNAAAGVSGLNAGNAASIPSKCGVSIP 80 (93)
T ss_dssp CCSSHHHHHHHGGGHHHHTTSCCSCCHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHTTSTTCCHHHHHHHHHHHHCCCS
T ss_pred CCChHHHHHhccCcHHHHcCCCCCChHHHHHHHHHHHHhhcCCCCCcccCEeeccccccccCcCHHHHHHHHHHcCCCCC
Confidence 36899999999999999998877899999999999999999999999999999877777778999999999999999999
Q ss_pred CCCCCCCcCCCCcc
Q 040194 122 LPPVDAKTKCSKIT 135 (138)
Q Consensus 122 ~~~is~~~DC~~i~ 135 (138)
| +|+++|||++|+
T Consensus 81 ~-~is~~~dC~~v~ 93 (93)
T 1afh_A 81 Y-TISTSTDCSRVN 93 (93)
T ss_dssp S-CCSTTCCSSSCC
T ss_pred C-CCCCCCCCccCC
Confidence 9 999999999985
No 3
>1t12_A LTP 1, nonspecific lipid-transfer protein 1; cystein rich protein, lipid transport; NMR {Nicotiana tabacum}
Probab=99.96 E-value=5.4e-31 Score=182.33 Aligned_cols=91 Identities=26% Similarity=0.700 Sum_probs=85.1
Q ss_pred CCCChhhhccccCchHHhcCCCCCchHHhHHHHHhhhhhhccccCccccceeecccccCCCCCCcCcccccccccCcCCC
Q 040194 42 RVECHKVEKRFAPCLHYIKGKSKHPSKDCCRGVKKISKHVKTKADKKALCKCIQRCLRGVDHYAKSCIPSIPKKCGINFT 121 (138)
Q Consensus 42 ~~~C~~v~~~L~pCl~yl~g~~~~Ps~~CC~~vk~l~~~a~T~~dr~~~C~Cl~~~~~~~~~in~~~a~~LP~~Cgv~ip 121 (138)
+++|+++...|.||++|++|++. |+ +||+|||+|++.|+|+.|||..|+|+++.+.++++||.++|++||++|||++|
T Consensus 1 a~~C~~v~~~L~pCl~y~~~~~~-P~-~CC~gv~~l~~~a~t~~dr~~~ClClk~~~~~~~~in~~~A~~LP~~C~v~~p 78 (91)
T 1t12_A 1 AITCGQVTSNLAPCLAYLRNTGP-LG-RCCGGVKALVNSARTTEDRQIACTCLKSAAGAISGINLGKAAGLPSTCGVNIP 78 (91)
T ss_dssp CCCHHHHHHHTHHHHHHHTTSSC-CT-THHHHHHHHHHTTCSTHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHTTCCCS
T ss_pred CCChHHHHHhccCcHHHHcCCCC-hH-HHHHHHHHHHhhccCCCCCCccCCCccccccccCCcChhHHHHHHHHcCCCCC
Confidence 36899999999999999999876 88 99999999999999999999999999877677768999999999999999999
Q ss_pred CCCCCCCcCCCCcc
Q 040194 122 LPPVDAKTKCSKIT 135 (138)
Q Consensus 122 ~~~is~~~DC~~i~ 135 (138)
| +|+++|||++|+
T Consensus 79 ~-~is~~~dC~~v~ 91 (91)
T 1t12_A 79 Y-KISPSTDCSKVQ 91 (91)
T ss_dssp S-CSSSSSCCTTCC
T ss_pred C-CCCCCCCCccCC
Confidence 9 999999999985
No 4
>1bwo_A NS-LTP1, nonspecific lipid-transfer protein; wheat, lipid binding, crystallography; HET: LPC; 2.10A {Triticum aestivum} SCOP: a.52.1.1 PDB: 1cz2_A* 1gh1_A 1be2_A* 1jtb_A* 1lip_A 1mid_A* 3cee_A* 3gsh_A*
Probab=99.96 E-value=7.6e-31 Score=181.19 Aligned_cols=90 Identities=31% Similarity=0.857 Sum_probs=84.9
Q ss_pred CCChhhhccccCchHHhcCCCCCchHHhHHHHHhhhhhhccccCccccceeecccccCCCCCCcCcccccccccCcCCCC
Q 040194 43 VECHKVEKRFAPCLHYIKGKSKHPSKDCCRGVKKISKHVKTKADKKALCKCIQRCLRGVDHYAKSCIPSIPKKCGINFTL 122 (138)
Q Consensus 43 ~~C~~v~~~L~pCl~yl~g~~~~Ps~~CC~~vk~l~~~a~T~~dr~~~C~Cl~~~~~~~~~in~~~a~~LP~~Cgv~ip~ 122 (138)
++|+++...|.||++|++|++. |+++||++||+|+++|+|+.|||..|+|+++.+.++++||.++|++||++|||++||
T Consensus 1 i~C~~v~~~L~pCl~y~~~~~~-Ps~~CC~~lk~l~~~a~t~~dr~~~ClClk~~~~~~~~in~~~A~~LP~~C~v~~p~ 79 (90)
T 1bwo_A 1 IDCGHVDSLVRPCLSYVQGGPG-PSGQCCDGVKNLHNQARSQSDRQSACNCLKGIARGIHNLNEDNARSIPPKCGVNLPY 79 (90)
T ss_dssp CCHHHHHHHHGGGHHHHTTCSC-CCHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHTTCTTCCHHHHHTHHHHHTCCCSS
T ss_pred CCHHHHHHhhcccHHHHcCCCC-CCHHHhHHHHHHHhhccCCCCCCccCcCccCchhccCCcCHHHHHHHHHHcCCCCCC
Confidence 4799999999999999998875 999999999999999999999999999998877777789999999999999999999
Q ss_pred CCCCCCcCCCCc
Q 040194 123 PPVDAKTKCSKI 134 (138)
Q Consensus 123 ~~is~~~DC~~i 134 (138)
+|+++|||++|
T Consensus 80 -~is~~~dC~~v 90 (90)
T 1bwo_A 80 -TISLNIDCSRV 90 (90)
T ss_dssp -CCCTTCCGGGC
T ss_pred -CCCCCCCCCCC
Confidence 99999999987
No 5
>1siy_A LTP 1, NS-LTP1, nonspecific lipid-transfer protein 1; alpha helix, lipid binding protein; NMR {Vigna radiata var}
Probab=99.95 E-value=1.5e-30 Score=179.90 Aligned_cols=91 Identities=27% Similarity=0.683 Sum_probs=85.5
Q ss_pred CCChhhhccccCchHHhcCCCCCchHHhHHHHHhhhhhhccccCccccceeecccccCCCCCCcCcccccccccCcCCCC
Q 040194 43 VECHKVEKRFAPCLHYIKGKSKHPSKDCCRGVKKISKHVKTKADKKALCKCIQRCLRGVDHYAKSCIPSIPKKCGINFTL 122 (138)
Q Consensus 43 ~~C~~v~~~L~pCl~yl~g~~~~Ps~~CC~~vk~l~~~a~T~~dr~~~C~Cl~~~~~~~~~in~~~a~~LP~~Cgv~ip~ 122 (138)
++|+++...|.||++|+++++. |+++||++||+|++.|+|+.|||..|+|+++.+.++++||.++|++||++|||++||
T Consensus 1 i~C~~v~~~L~pCl~yv~~~~~-Ps~~CC~~lk~l~~~a~t~~d~~~~ClC~k~~~~~~~~in~~~A~~LP~~Cgv~~p~ 79 (91)
T 1siy_A 1 MTCGQVQGNLAQCIGFLQKGGV-VPPSCCTGVKNILNSSRTTADRRAVCSCLKAAAGAVRGINPNNAEALPGKCGVNIPY 79 (91)
T ss_dssp CCTTTTHHHHHHHHHHHTSCSC-CCHHHHHHHHHHHTTTCSSHHHHHHHHHHHHHTTCCSSCCHHHHHHHHHHHTCCCSS
T ss_pred CCHHHHHHhccCcHHHHhCCCC-CcHHHHHHHHHHHhhhccCCCCCcCCcccCCcccccCCcCHHHHHHHHHHcCCCCCC
Confidence 4799999999999999998875 999999999999999999999999999998877777679999999999999999999
Q ss_pred CCCCCCcCCCCcc
Q 040194 123 PPVDAKTKCSKIT 135 (138)
Q Consensus 123 ~~is~~~DC~~i~ 135 (138)
+|+++|||++|+
T Consensus 80 -~is~~~dC~~v~ 91 (91)
T 1siy_A 80 -KISTSTNCNSIN 91 (91)
T ss_dssp -CSCTTSCSSTTC
T ss_pred -CCCCCCCCccCC
Confidence 999999999985
No 6
>2alg_A Non-specific lipid transfer protein; LTP, NS-LTP, FOOD allergen, lipid transport; HET: DAO P6G; 2.30A {Prunus persica} PDB: 2b5s_A*
Probab=99.95 E-value=3.2e-30 Score=178.61 Aligned_cols=92 Identities=25% Similarity=0.719 Sum_probs=85.3
Q ss_pred CCCChhhhccccCchHHhcCCCCCchHHhHHHHHhhhhhhccccCccccceeecccccCCCCCCcCcccccccccCcCCC
Q 040194 42 RVECHKVEKRFAPCLHYIKGKSKHPSKDCCRGVKKISKHVKTKADKKALCKCIQRCLRGVDHYAKSCIPSIPKKCGINFT 121 (138)
Q Consensus 42 ~~~C~~v~~~L~pCl~yl~g~~~~Ps~~CC~~vk~l~~~a~T~~dr~~~C~Cl~~~~~~~~~in~~~a~~LP~~Cgv~ip 121 (138)
+++|+++...|.||++|++|++ .|+++||++||+|+++|+|++|||..|+|++....++++||.++|++||++|||++|
T Consensus 1 ~~~C~~v~~~L~pCl~y~~~~~-~p~~~CC~~lk~l~~~a~t~~d~~~~ClC~~~~~~~~~~in~~~A~~LP~~Cgv~~p 79 (92)
T 2alg_A 1 MITCGQVSSSLAPCIPYVRGGG-AVPPACCNGIRNVNNLARTTPDRQAACNCLKQLSASVPGVNPNNAAALPGKCGVSIP 79 (92)
T ss_dssp CCCHHHHHHHHGGGHHHHHHCS-CCCHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHHTTCCCS
T ss_pred CCChHHHHHhccCcHHHHcCCC-CCCHHHHHHHHHHHhhhcccCCCCcCCccccCcccccCccChHHHHHHHHHcCCCCC
Confidence 3689999999999999999876 588899999999999999999999999999877667767999999999999999999
Q ss_pred CCCCCCCcCCCCcc
Q 040194 122 LPPVDAKTKCSKIT 135 (138)
Q Consensus 122 ~~~is~~~DC~~i~ 135 (138)
| +|+++|||++|+
T Consensus 80 ~-~is~~~dC~~v~ 92 (92)
T 2alg_A 80 Y-KISASTNCATVK 92 (92)
T ss_dssp S-CSSTTSCGGGCC
T ss_pred C-CCCCCCCCccCC
Confidence 9 999999999985
No 7
>2rkn_A DIR1 protein, AT5G48485; LTP, defense signaling protein, signaling protein, lipid TRA; HET: LP3; 1.60A {Arabidopsis thaliana}
Probab=99.59 E-value=5.5e-17 Score=108.36 Aligned_cols=70 Identities=21% Similarity=0.475 Sum_probs=59.5
Q ss_pred CCCChhhhccccCchHHhcCC-CCCchHHhHHHHHhhhhhhccccCccccceeeccc---ccCCCCCCcCcccccccccC
Q 040194 42 RVECHKVEKRFAPCLHYIKGK-SKHPSKDCCRGVKKISKHVKTKADKKALCKCIQRC---LRGVDHYAKSCIPSIPKKCG 117 (138)
Q Consensus 42 ~~~C~~v~~~L~pCl~yl~g~-~~~Ps~~CC~~vk~l~~~a~T~~dr~~~C~Cl~~~---~~~~~~in~~~a~~LP~~Cg 117 (138)
..+|+++...|.||++|++++ ...|+++||++||+ .|+ .|+|.+.. +.++ +||.++|++||++||
T Consensus 2 ~~~C~~~~~~L~pC~~yv~~~~~~~Ps~~CC~~lk~--------~~~--~ClC~~~~~~~~~~~-gin~~~A~~LP~~Cg 70 (77)
T 2rkn_A 2 IDLCGMSQDELNECKPAVSKENPTSPSQPCCTALQH--------ADF--ACLCGYKNSPWLGSF-GVDPELASALPKQCG 70 (77)
T ss_dssp CCBTTBCHHHHHHHGGGGBSSSCCCCCHHHHHHHTT--------CCH--HHHHTTTTCHHHHHH-TBCHHHHHHHHHHTT
T ss_pred cchHHhHHHhHhhCHHHHcCCCCCCCCHHHHHHHHh--------cCc--CCcCcccCCcchhhc-CcCHHHHHHHHHHcC
Confidence 578999999999999999974 45899999999998 133 68888644 4556 799999999999999
Q ss_pred cCCCC
Q 040194 118 INFTL 122 (138)
Q Consensus 118 v~ip~ 122 (138)
|++||
T Consensus 71 v~~p~ 75 (77)
T 2rkn_A 71 LANAP 75 (77)
T ss_dssp CSCCC
T ss_pred CCCCC
Confidence 99987
No 8
>1l6h_A LTP2, non-specific lipid transfer protein; NSLTP2, plant LTP, lipid transport; NMR {Oryza sativa} SCOP: a.52.1.1
Probab=99.43 E-value=1.7e-14 Score=94.69 Aligned_cols=63 Identities=21% Similarity=0.496 Sum_probs=50.1
Q ss_pred CChhhhccccCchHHhcCCCCCchHHhHHHHHhhhhhhccccCcccccee--ecccccCCCCCCcCcccccccccCcCCC
Q 040194 44 ECHKVEKRFAPCLHYIKGKSKHPSKDCCRGVKKISKHVKTKADKKALCKC--IQRCLRGVDHYAKSCIPSIPKKCGINFT 121 (138)
Q Consensus 44 ~C~~v~~~L~pCl~yl~g~~~~Ps~~CC~~vk~l~~~a~T~~dr~~~C~C--l~~~~~~~~~in~~~a~~LP~~Cgv~ip 121 (138)
+|.. +.|.||++|++++. .||++||++||+. ..|+| +++.... .+||.++|++||++|||++|
T Consensus 2 ~C~~--~~L~pC~~~v~~~~-~Ps~~CC~~lk~~-----------~~ClC~~~k~~~~~-~~in~~~A~~Lp~~Cgv~~P 66 (69)
T 1l6h_A 2 GCNA--GQLTVCTGAIAGGA-RPTAACCSSLRAQ-----------QGCFCQFAKDPRYG-RYVNSPNARKAVSSCGIALP 66 (69)
T ss_dssp CSTT--TTHHHHHHHHTTCC-STTHHHHHHHHHH-----------HHHHHHHTTCSSHH-HHTTTTTGGGCCCCCSSCSC
T ss_pred CCCh--hhcccCHHHHcCCC-CCCHHHHHhhCCC-----------CCCCCccccCcccc-cccCHHHHHHHHHHcCCCCC
Confidence 3554 57999999999875 7999999999972 46888 5554322 25999999999999999875
No 9
>1n89_A Lipid transfer protein; lipid transport; HET: PGM; NMR {Triticum turgidum subsp} SCOP: a.52.1.1 PDB: 1tuk_A*
Probab=99.40 E-value=1.1e-14 Score=95.02 Aligned_cols=59 Identities=20% Similarity=0.474 Sum_probs=48.3
Q ss_pred ccccCchHHhcCCCCCchHHhHHHHHhhhhhhccccCcccccee--ecccccCCCCCCcCcccccccccCcCCC
Q 040194 50 KRFAPCLHYIKGKSKHPSKDCCRGVKKISKHVKTKADKKALCKC--IQRCLRGVDHYAKSCIPSIPKKCGINFT 121 (138)
Q Consensus 50 ~~L~pCl~yl~g~~~~Ps~~CC~~vk~l~~~a~T~~dr~~~C~C--l~~~~~~~~~in~~~a~~LP~~Cgv~ip 121 (138)
+.|.||++|+++++ .||++||++||+ +..|+| +++.... .+||.++|++||++|||++|
T Consensus 5 ~~L~pC~~~v~~~~-~Ps~~CC~~lk~-----------~~~ClC~~~k~~~~~-~~in~~~A~~Lp~~Cgv~~P 65 (67)
T 1n89_A 5 SQLAVCASAILSGA-KPSGECCGNLRA-----------QQGCFCQYAKDPTYG-QYIRSPHARDTLTSCGLAVP 65 (67)
T ss_dssp STTHHHHHHHTTCC-CCCHHHHHHHHH-----------HSSHHHHGGGCSTTH-HHHTCHHHHHHHHHHTSCCS
T ss_pred hhcccCHHHHcCCC-CCCHHHHHhhCC-----------CCCCCCccccCcccc-cccCHHHHHHHHHHcCCCCC
Confidence 57999999999875 799999999997 247888 5554322 25999999999999999876
No 10
>3ob4_A Conglutin, maltose ABC transporter periplasmic protein, ARAH; alpha-amylase inhibitors (AAI), lipid transfer (LT) and SEED (SS) protein family; HET: MLR; 2.71A {Escherichia coli}
Probab=79.71 E-value=0.061 Score=45.13 Aligned_cols=45 Identities=20% Similarity=0.738 Sum_probs=28.7
Q ss_pred HHhHHHHHhhhhhhccccCcccccee--ecccccC--------C--CCCCcCcccccccccCcCCC
Q 040194 68 KDCCRGVKKISKHVKTKADKKALCKC--IQRCLRG--------V--DHYAKSCIPSIPKKCGINFT 121 (138)
Q Consensus 68 ~~CC~~vk~l~~~a~T~~dr~~~C~C--l~~~~~~--------~--~~in~~~a~~LP~~Cgv~ip 121 (138)
.+||+-++.+.+ +.-|+| ++..+.+ . ..+ ..+|..||..||+..|
T Consensus 429 ~~cc~~l~~~~~--------~~~c~c~~~~~~~~~~~~~~~~~~~~~~~-~~~a~~~p~~c~~~~~ 485 (500)
T 3ob4_A 429 ERCCNELNEFEN--------NQRCMCEALQQIMENQSDRLQGRQQEQQF-KRELRNLPQQCGLRAP 485 (500)
T ss_dssp HHHHHHHGGGTT--------CHHHHHHHHHHHHHHHHTTCCSSHHHHHH-HHHHHTHHHHTTCCCC
T ss_pred HHHHHHHHhCCc--------ccccccHHHHHHHHHHHHHhhhHHHHHHH-HHHHhhCchhcCCCCC
Confidence 789999998741 124666 4433221 0 012 3459999999999866
No 11
>1sm7_A Recombinant IB pronapin; all alpha-helix, right-handed superhelix, plant protein; NMR {Brassica napus}
Probab=63.09 E-value=1.2 Score=30.49 Aligned_cols=62 Identities=13% Similarity=0.469 Sum_probs=37.6
Q ss_pred cccCchHHhcC----CCC--C-------c--hHHhHHHHHhhhhhhccccCccccceeecccccC------CC----CCC
Q 040194 51 RFAPCLHYIKG----KSK--H-------P--SKDCCRGVKKISKHVKTKADKKALCKCIQRCLRG------VD----HYA 105 (138)
Q Consensus 51 ~L~pCl~yl~g----~~~--~-------P--s~~CC~~vk~l~~~a~T~~dr~~~C~Cl~~~~~~------~~----~in 105 (138)
.|.+|..|+.- +.. . + -..||..++.+.. ++.|.=++..+.+ ++ .-.
T Consensus 14 ~L~~C~~yv~qq~~~~~~~~~~~~~~~~~~~~qqCC~qL~~v~~--------qCrC~al~~~v~~~~~qgq~~~~~~~~~ 85 (109)
T 1sm7_A 14 HLRACQQWIRQQLAGSPFSENQWGPQQGPSLREQCCNELYQEDQ--------VCVCPTLKQAAKSVRVQGQHGPFQSTRI 85 (109)
T ss_dssp CCSSHHHHGGGGTTSSCCCSCSSSCTTCCTTHHHHHHHTTTTCH--------HHHTTTTHHHHHTSSCSSCCCTTHHHHH
T ss_pred cHHHHHHHHHHHhcCCCcccccccccccHHHHHHHHHHHHhcCc--------cCCCHHHHHHHHHHHHhcccchHHHHHH
Confidence 38899999962 110 1 1 3689999999754 3334335443322 11 012
Q ss_pred cCcccccccccCcCC
Q 040194 106 KSCIPSIPKKCGINF 120 (138)
Q Consensus 106 ~~~a~~LP~~Cgv~i 120 (138)
..+|..||+.||+..
T Consensus 86 ~~~a~~LP~~Cnl~~ 100 (109)
T 1sm7_A 86 YQIAKNLPNVCNMKQ 100 (109)
T ss_dssp HHTTSSHHHHSCCCS
T ss_pred HHHHHhCHHhcCCCC
Confidence 345889999999973
No 12
>1hyp_A Hydrophobic protein from soybean; hydrophobic SEED protein; 1.80A {Glycine max} SCOP: a.52.1.1
Probab=38.68 E-value=4.6 Score=26.64 Aligned_cols=63 Identities=22% Similarity=0.465 Sum_probs=39.8
Q ss_pred cccCchHHhcCCCCCchHHhHHHHHhhhhhhccccCccccceeecccccCCCCCCcCcccc-cccccCcCCCC
Q 040194 51 RFAPCLHYIKGKSKHPSKDCCRGVKKISKHVKTKADKKALCKCIQRCLRGVDHYAKSCIPS-IPKKCGINFTL 122 (138)
Q Consensus 51 ~L~pCl~yl~g~~~~Ps~~CC~~vk~l~~~a~T~~dr~~~C~Cl~~~~~~~~~in~~~a~~-LP~~Cgv~ip~ 122 (138)
+|.-|..-+.|. ..|..+||.-++.|.+.- -+.|+|-.--+.++ +|.....+ |-..||-.+|.
T Consensus 10 kLgvCanvL~g~-~~~~~~CC~Ll~GL~dle------AAvCLCtaik~Lgi--lnlpv~L~llln~Cgk~~P~ 73 (80)
T 1hyp_A 10 DLSICLNILGGS-LGTVDDCCALIGGLGDIE------AIVCLCIQLRALGI--LNLNRNLQLILNSCGRSYPS 73 (80)
T ss_dssp CCGGGGGGGGTC-CTTHHHHHHHHHTSCHHH------HHHHHHHHHHHHTC--SCHHHHHHHHHHHTTCSSCC
T ss_pred chhHHHHHhCcC-CCCCCccchhhhCcchhh------hhhhhhhhccccce--eecChhHHHHHHHhCCcCcC
Confidence 577788887543 247789999999986430 25788852112222 45554554 55789998663
No 13
>1pnb_B Napin BNIB; napin IA and IB, albumin SEED protein, SEED storage protein; NMR {Brassica napus} SCOP: a.52.1.3
Probab=24.21 E-value=25 Score=22.28 Aligned_cols=47 Identities=13% Similarity=0.456 Sum_probs=30.0
Q ss_pred CchHHhHHHHHhhhhhhccccCcccccee--eccccc------CCCC----CCcCcccccccccCcCCC
Q 040194 65 HPSKDCCRGVKKISKHVKTKADKKALCKC--IQRCLR------GVDH----YAKSCIPSIPKKCGINFT 121 (138)
Q Consensus 65 ~Ps~~CC~~vk~l~~~a~T~~dr~~~C~C--l~~~~~------~~~~----in~~~a~~LP~~Cgv~ip 121 (138)
..-..||+-++.+.. -|.| |+..+. .+++ -...+|..||+.||+..+
T Consensus 9 ~~~qqCC~qL~~~~~----------~CrC~aL~~~~~~~~~qgq~~~~q~~~~~q~a~~LP~~Cnl~~~ 67 (75)
T 1pnb_B 9 WLREQCCNELYQEDQ----------VCVCPTLKQAAKSVRVQGQHGPFQSTRIYQIAKNLPNVCNMKQI 67 (75)
T ss_dssp SCTHHHHHHHHTSCG----------GGSHHHHHHHHHHHHSGGGCSSCCHHHHHHHCCSCSCSSCCTTT
T ss_pred HHHHHHHHHHHhCCc----------ccccHHHHHHHHHHHHHcccchHHHHHHHHHHHhhHHhcCCCCC
Confidence 455789999998653 3666 444321 1211 124578999999999743
Done!