BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 040195
(472 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1
Ectodomain
pdb|3RJ0|A Chain A, Plant Steroid Receptor Bri1 Ectodomain In Complex With
Brassinolide
Length = 772
Score = 137 bits (344), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 138/465 (29%), Positives = 207/465 (44%), Gaps = 61/465 (13%)
Query: 40 VTELDLSNQRIGGVLSPY--VGNLSFLRYINLSDN--GFHGEIPQEIGNLYRLEKLELSN 95
+T LDLS + G ++ +G+ S L+++N+S N F G++ + L LE L+LS
Sbjct: 99 LTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGL-KLNSLEVLDLSA 157
Query: 96 NSFSGT--IPTNLSR-CSELTHLRVANNKLEGQIPKEIGSLLKLQTLALYYNNLTGQLPD 152
NS SG + LS C EL HL ++ NK+ G + ++ + L+ L + NN + +P
Sbjct: 158 NSISGANVVGWVLSDGCGELKHLAISGNKISGDV--DVSRCVNLEFLDVSSNNFSTGIP- 214
Query: 153 FVGNLSALQVIYIRGNSLGGKIPTTLGLLRNLVYLNVNENQF------------WYVS-- 198
F+G+ SALQ + I GN L G + L LN++ NQF Y+S
Sbjct: 215 FLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPLPLKSLQYLSLA 274
Query: 199 --SFSGSLPFDILVNLPNLKKLCIAENNFVGSIPDXXXXXXXXXXXXXXGNQFEGKVSID 256
F+G +P + L L ++ N+F G++P N F G++ +D
Sbjct: 275 ENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMD 334
Query: 257 -FSSLKNLAVLNLERNNLGIGTANDLG--FVTFLT------NCSSLKLPHSIANLSSTMT 307
++ L VL+L N L + LT N S LP+ N +T+
Sbjct: 335 TLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQ 394
Query: 308 HFYIGGNQILGIIHFGIRNLVNLIALGMQSNQLHGTIPDVIGELKNLQILSLFGNFLHGS 367
Y+ N G I + N L++L + N L GTIP +G L L+ L L+ N L G
Sbjct: 395 ELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGE 454
Query: 368 IPSSLGNLTKLANLELSSNSLQGNIPLSVGNCQNLIGFDASHITLTGALPQQLLSITTXX 427
IP L + L L L N L G IP + NC NL S+ LTG +P+ + +
Sbjct: 455 IPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRL---- 510
Query: 428 XXXXXXXXXXXXXXXXXXXXXKNLILLDISGNQFSGVIPVTLSIC 472
+NL +L +S N FSG IP L C
Sbjct: 511 ---------------------ENLAILKLSNNSFSGNIPAELGDC 534
Score = 131 bits (329), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 123/382 (32%), Positives = 190/382 (49%), Gaps = 38/382 (9%)
Query: 43 LDLSNQRIGGVLSPYVGN--LSFLRYINLSDNGFHGEIPQEIGNLYRLEKLELSNNSFSG 100
LDLS+ G + P + + L+ + L +NGF G+IP + N L L LS N SG
Sbjct: 370 LDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSG 429
Query: 101 TIPTNLSRCSELTHLRVANNKLEGQIPKEIGSLLKLQTLALYYNNLTGQLPDFVGNLSAL 160
TIP++L S+L L++ N LEG+IP+E+ + L+TL L +N+LTG++P + N + L
Sbjct: 430 TIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNL 489
Query: 161 QVIYIRGNSLGGKIPTTLGLLRNLVYLNVNENQFWYVSSFSGSLPFDILVNLPNLKKLCI 220
I + N L G+IP +G L NL L ++ N SFSG++P + L + +L L +
Sbjct: 490 NWISLSNNRLTGEIPKWIGRLENLAILKLSNN------SFSGNIPAE-LGDCRSLIWLDL 542
Query: 221 AENNFVGSIPDXXXXXXXXXXXXXXGNQFEGKVSIDFSSLKNLAVLN---LERNNLGIGT 277
N F G+IP + GK++ +F + K + +++ G G
Sbjct: 543 NTNLFNGTIPAAMF-------------KQSGKIAANFIAGKRYVYIKNDGMKKECHGAGN 589
Query: 278 ANDL-GFVTFLTNCSSLKLPHSIANLSSTMTHFYIGGNQILGIIHFGIRNLVNLIALGMQ 336
+ G + N S + P +I T GG+ + G +++ L M
Sbjct: 590 LLEFQGIRSEQLNRLSTRNPCNI-------TSRVYGGHTSPTFDNNG-----SMMFLDMS 637
Query: 337 SNQLHGTIPDVIGELKNLQILSLFGNFLHGSIPSSLGNLTKLANLELSSNSLQGNIPLSV 396
N L G IP IG + L IL+L N + GSIP +G+L L L+LSSN L G IP ++
Sbjct: 638 YNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAM 697
Query: 397 GNCQNLIGFDASHITLTGALPQ 418
L D S+ L+G +P+
Sbjct: 698 SALTMLTEIDLSNNNLSGPIPE 719
Score = 123 bits (308), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 109/363 (30%), Positives = 164/363 (45%), Gaps = 32/363 (8%)
Query: 33 CGHRHQRVTELDLSNQRIGGVLSPYVGNLSFLRYINLSDNGFHGEIPQEIGNLYRLEKLE 92
C + + EL L N G + P + N S L ++LS N G IP +G+L +L L+
Sbjct: 386 CQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLK 445
Query: 93 LSNNSFSGTIPTNLSRCSELTHLRVANNKLEGQIPKEIGSLLKLQTLALYYNNLTGQLPD 152
L N G IP L L L + N L G+IP + + L ++L N LTG++P
Sbjct: 446 LWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPK 505
Query: 153 FVGNLSALQVIYIRGNSLGGKIPTTLGLLRNLVYLNVNENQFWYVSSFSGSLPFDILVNL 212
++G L L ++ + NS G IP LG R+L++L++N N F+G++P +
Sbjct: 506 WIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNL------FNGTIPAAMFKQS 559
Query: 213 PNLKKLCIAENNFVGSIPDXXXXXXXXXXXXXXGN--QFEGKVSIDFSSLKNLAVLNLER 270
+ IA +V D GN +F+G S + L N+
Sbjct: 560 GKIAANFIAGKRYVYIKND-----GMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITS 614
Query: 271 NNLGIGTANDLGFVTFLTNCSSLKLPHSIANLSSTMTHFYIGGNQILGIIHFGIRNLVNL 330
G T+ TF N S + L S N + G I I ++ L
Sbjct: 615 RVYGGHTS-----PTFDNNGSMMFLDMSY--------------NMLSGYIPKEIGSMPYL 655
Query: 331 IALGMQSNQLHGTIPDVIGELKNLQILSLFGNFLHGSIPSSLGNLTKLANLELSSNSLQG 390
L + N + G+IPD +G+L+ L IL L N L G IP ++ LT L ++LS+N+L G
Sbjct: 656 FILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSG 715
Query: 391 NIP 393
IP
Sbjct: 716 PIP 718
Score = 105 bits (263), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 113/416 (27%), Positives = 189/416 (45%), Gaps = 38/416 (9%)
Query: 40 VTELDLSNQRIGGVLSPYVGNLSFLRYINLSDNGFHGEIPQE-IGNLYRLEKLELSNNSF 98
+T LDLS G + P+ G+ S L + LS N F GE+P + + + L+ L+LS N F
Sbjct: 293 LTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEF 352
Query: 99 SGTIPTNLSRCS-ELTHLRVANNKLEGQIPKEIGSLLK--LQTLALYYNNLTGQLPDFVG 155
SG +P +L+ S L L +++N G I + K LQ L L N TG++P +
Sbjct: 353 SGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLS 412
Query: 156 NLSALQVIYIRGNSLGGKIPTTLGLLRNLVYLNVNENQFWYVSSFSGSLPFDILVNLPNL 215
N S L +++ N L G IP++LG L L L + +++ G +P +++ + L
Sbjct: 413 NCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKL------WLNMLEGEIPQELMY-VKTL 465
Query: 216 KKLCIAENNFVGSIPDXXXXXXXXXXXXXXGNQFEGKVSIDFSSLKNLAVLNLERNNLG- 274
+ L + N+ G IP N+ G++ L+NLA+L L N+
Sbjct: 466 ETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSG 525
Query: 275 -----IGTANDLGFVTFLTNCSSLKLPHSIANLSSTMTHFYIGGNQILGIIHFGIRNLV- 328
+G L ++ TN + +P ++ S + +I G + + I + G++
Sbjct: 526 NIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECH 585
Query: 329 ---NLIAL-GMQSNQLH----------------GTIPDVIGELKNLQILSLFGNFLHGSI 368
NL+ G++S QL+ G ++ L + N L G I
Sbjct: 586 GAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYI 645
Query: 369 PSSLGNLTKLANLELSSNSLQGNIPLSVGNCQNLIGFDASHITLTGALPQQLLSIT 424
P +G++ L L L N + G+IP VG+ + L D S L G +PQ + ++T
Sbjct: 646 PKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALT 701
Score = 66.6 bits (161), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 42/142 (29%), Positives = 77/142 (54%), Gaps = 2/142 (1%)
Query: 14 GVTSSWNNTINLCQWMGVTCGHRHQRVTE--LDLSNQRIGGVLSPYVGNLSFLRYINLSD 71
G+ + NL ++ G+ ++ T +++++ GG SP N + ++++S
Sbjct: 579 GMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSY 638
Query: 72 NGFHGEIPQEIGNLYRLEKLELSNNSFSGTIPTNLSRCSELTHLRVANNKLEGQIPKEIG 131
N G IP+EIG++ L L L +N SG+IP + L L +++NKL+G+IP+ +
Sbjct: 639 NMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMS 698
Query: 132 SLLKLQTLALYYNNLTGQLPDF 153
+L L + L NNL+G +P+
Sbjct: 699 ALTMLTEIDLSNNNLSGPIPEM 720
Score = 60.1 bits (144), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 50/212 (23%), Positives = 88/212 (41%), Gaps = 51/212 (24%)
Query: 27 QWMGVTCGHRHQRVTELDLSNQRIGGVLSPYVGNLSFLRYINLSDNGFHGEIPQEI---- 82
+W+G R + + L LSN G + +G+ L +++L+ N F+G IP +
Sbjct: 505 KWIG-----RLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQS 559
Query: 83 ----------------------------GNLYRLEKLE--------------LSNNSFSG 100
GNL + + +++ + G
Sbjct: 560 GKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGG 619
Query: 101 TIPTNLSRCSELTHLRVANNKLEGQIPKEIGSLLKLQTLALYYNNLTGQLPDFVGNLSAL 160
+ L ++ N L G IPKEIGS+ L L L +N+++G +PD VG+L L
Sbjct: 620 HTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGL 679
Query: 161 QVIYIRGNSLGGKIPTTLGLLRNLVYLNVNEN 192
++ + N L G+IP + L L ++++ N
Sbjct: 680 NILDLSSNKLDGRIPQAMSALTMLTEIDLSNN 711
>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
pdb|3RGZ|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
Length = 768
Score = 137 bits (344), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 138/465 (29%), Positives = 207/465 (44%), Gaps = 61/465 (13%)
Query: 40 VTELDLSNQRIGGVLSPY--VGNLSFLRYINLSDN--GFHGEIPQEIGNLYRLEKLELSN 95
+T LDLS + G ++ +G+ S L+++N+S N F G++ + L LE L+LS
Sbjct: 102 LTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGL-KLNSLEVLDLSA 160
Query: 96 NSFSGT--IPTNLSR-CSELTHLRVANNKLEGQIPKEIGSLLKLQTLALYYNNLTGQLPD 152
NS SG + LS C EL HL ++ NK+ G + ++ + L+ L + NN + +P
Sbjct: 161 NSISGANVVGWVLSDGCGELKHLAISGNKISGDV--DVSRCVNLEFLDVSSNNFSTGIP- 217
Query: 153 FVGNLSALQVIYIRGNSLGGKIPTTLGLLRNLVYLNVNENQF------------WYVS-- 198
F+G+ SALQ + I GN L G + L LN++ NQF Y+S
Sbjct: 218 FLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPLPLKSLQYLSLA 277
Query: 199 --SFSGSLPFDILVNLPNLKKLCIAENNFVGSIPDXXXXXXXXXXXXXXGNQFEGKVSID 256
F+G +P + L L ++ N+F G++P N F G++ +D
Sbjct: 278 ENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMD 337
Query: 257 -FSSLKNLAVLNLERNNLGIGTANDLG--FVTFLT------NCSSLKLPHSIANLSSTMT 307
++ L VL+L N L + LT N S LP+ N +T+
Sbjct: 338 TLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQ 397
Query: 308 HFYIGGNQILGIIHFGIRNLVNLIALGMQSNQLHGTIPDVIGELKNLQILSLFGNFLHGS 367
Y+ N G I + N L++L + N L GTIP +G L L+ L L+ N L G
Sbjct: 398 ELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGE 457
Query: 368 IPSSLGNLTKLANLELSSNSLQGNIPLSVGNCQNLIGFDASHITLTGALPQQLLSITTXX 427
IP L + L L L N L G IP + NC NL S+ LTG +P+ + +
Sbjct: 458 IPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRL---- 513
Query: 428 XXXXXXXXXXXXXXXXXXXXXKNLILLDISGNQFSGVIPVTLSIC 472
+NL +L +S N FSG IP L C
Sbjct: 514 ---------------------ENLAILKLSNNSFSGNIPAELGDC 537
Score = 130 bits (328), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 123/382 (32%), Positives = 190/382 (49%), Gaps = 38/382 (9%)
Query: 43 LDLSNQRIGGVLSPYVGN--LSFLRYINLSDNGFHGEIPQEIGNLYRLEKLELSNNSFSG 100
LDLS+ G + P + + L+ + L +NGF G+IP + N L L LS N SG
Sbjct: 373 LDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSG 432
Query: 101 TIPTNLSRCSELTHLRVANNKLEGQIPKEIGSLLKLQTLALYYNNLTGQLPDFVGNLSAL 160
TIP++L S+L L++ N LEG+IP+E+ + L+TL L +N+LTG++P + N + L
Sbjct: 433 TIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNL 492
Query: 161 QVIYIRGNSLGGKIPTTLGLLRNLVYLNVNENQFWYVSSFSGSLPFDILVNLPNLKKLCI 220
I + N L G+IP +G L NL L ++ N SFSG++P + L + +L L +
Sbjct: 493 NWISLSNNRLTGEIPKWIGRLENLAILKLSNN------SFSGNIPAE-LGDCRSLIWLDL 545
Query: 221 AENNFVGSIPDXXXXXXXXXXXXXXGNQFEGKVSIDFSSLKNLAVLN---LERNNLGIGT 277
N F G+IP + GK++ +F + K + +++ G G
Sbjct: 546 NTNLFNGTIPAAMF-------------KQSGKIAANFIAGKRYVYIKNDGMKKECHGAGN 592
Query: 278 ANDL-GFVTFLTNCSSLKLPHSIANLSSTMTHFYIGGNQILGIIHFGIRNLVNLIALGMQ 336
+ G + N S + P +I T GG+ + G +++ L M
Sbjct: 593 LLEFQGIRSEQLNRLSTRNPCNI-------TSRVYGGHTSPTFDNNG-----SMMFLDMS 640
Query: 337 SNQLHGTIPDVIGELKNLQILSLFGNFLHGSIPSSLGNLTKLANLELSSNSLQGNIPLSV 396
N L G IP IG + L IL+L N + GSIP +G+L L L+LSSN L G IP ++
Sbjct: 641 YNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAM 700
Query: 397 GNCQNLIGFDASHITLTGALPQ 418
L D S+ L+G +P+
Sbjct: 701 SALTMLTEIDLSNNNLSGPIPE 722
Score = 122 bits (307), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 109/363 (30%), Positives = 164/363 (45%), Gaps = 32/363 (8%)
Query: 33 CGHRHQRVTELDLSNQRIGGVLSPYVGNLSFLRYINLSDNGFHGEIPQEIGNLYRLEKLE 92
C + + EL L N G + P + N S L ++LS N G IP +G+L +L L+
Sbjct: 389 CQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLK 448
Query: 93 LSNNSFSGTIPTNLSRCSELTHLRVANNKLEGQIPKEIGSLLKLQTLALYYNNLTGQLPD 152
L N G IP L L L + N L G+IP + + L ++L N LTG++P
Sbjct: 449 LWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPK 508
Query: 153 FVGNLSALQVIYIRGNSLGGKIPTTLGLLRNLVYLNVNENQFWYVSSFSGSLPFDILVNL 212
++G L L ++ + NS G IP LG R+L++L++N N F+G++P +
Sbjct: 509 WIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNL------FNGTIPAAMFKQS 562
Query: 213 PNLKKLCIAENNFVGSIPDXXXXXXXXXXXXXXGN--QFEGKVSIDFSSLKNLAVLNLER 270
+ IA +V D GN +F+G S + L N+
Sbjct: 563 GKIAANFIAGKRYVYIKND-----GMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITS 617
Query: 271 NNLGIGTANDLGFVTFLTNCSSLKLPHSIANLSSTMTHFYIGGNQILGIIHFGIRNLVNL 330
G T+ TF N S + L S N + G I I ++ L
Sbjct: 618 RVYGGHTS-----PTFDNNGSMMFLDMSY--------------NMLSGYIPKEIGSMPYL 658
Query: 331 IALGMQSNQLHGTIPDVIGELKNLQILSLFGNFLHGSIPSSLGNLTKLANLELSSNSLQG 390
L + N + G+IPD +G+L+ L IL L N L G IP ++ LT L ++LS+N+L G
Sbjct: 659 FILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSG 718
Query: 391 NIP 393
IP
Sbjct: 719 PIP 721
Score = 105 bits (262), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 113/416 (27%), Positives = 189/416 (45%), Gaps = 38/416 (9%)
Query: 40 VTELDLSNQRIGGVLSPYVGNLSFLRYINLSDNGFHGEIPQE-IGNLYRLEKLELSNNSF 98
+T LDLS G + P+ G+ S L + LS N F GE+P + + + L+ L+LS N F
Sbjct: 296 LTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEF 355
Query: 99 SGTIPTNLSRCS-ELTHLRVANNKLEGQIPKEIGSLLK--LQTLALYYNNLTGQLPDFVG 155
SG +P +L+ S L L +++N G I + K LQ L L N TG++P +
Sbjct: 356 SGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLS 415
Query: 156 NLSALQVIYIRGNSLGGKIPTTLGLLRNLVYLNVNENQFWYVSSFSGSLPFDILVNLPNL 215
N S L +++ N L G IP++LG L L L + +++ G +P +++ + L
Sbjct: 416 NCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKL------WLNMLEGEIPQELMY-VKTL 468
Query: 216 KKLCIAENNFVGSIPDXXXXXXXXXXXXXXGNQFEGKVSIDFSSLKNLAVLNLERNNLG- 274
+ L + N+ G IP N+ G++ L+NLA+L L N+
Sbjct: 469 ETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSG 528
Query: 275 -----IGTANDLGFVTFLTNCSSLKLPHSIANLSSTMTHFYIGGNQILGIIHFGIRNLV- 328
+G L ++ TN + +P ++ S + +I G + + I + G++
Sbjct: 529 NIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECH 588
Query: 329 ---NLIAL-GMQSNQLH----------------GTIPDVIGELKNLQILSLFGNFLHGSI 368
NL+ G++S QL+ G ++ L + N L G I
Sbjct: 589 GAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYI 648
Query: 369 PSSLGNLTKLANLELSSNSLQGNIPLSVGNCQNLIGFDASHITLTGALPQQLLSIT 424
P +G++ L L L N + G+IP VG+ + L D S L G +PQ + ++T
Sbjct: 649 PKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALT 704
Score = 67.0 bits (162), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 41/132 (31%), Positives = 74/132 (56%), Gaps = 2/132 (1%)
Query: 24 NLCQWMGVTCGHRHQRVTE--LDLSNQRIGGVLSPYVGNLSFLRYINLSDNGFHGEIPQE 81
NL ++ G+ ++ T +++++ GG SP N + ++++S N G IP+E
Sbjct: 592 NLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKE 651
Query: 82 IGNLYRLEKLELSNNSFSGTIPTNLSRCSELTHLRVANNKLEGQIPKEIGSLLKLQTLAL 141
IG++ L L L +N SG+IP + L L +++NKL+G+IP+ + +L L + L
Sbjct: 652 IGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDL 711
Query: 142 YYNNLTGQLPDF 153
NNL+G +P+
Sbjct: 712 SNNNLSGPIPEM 723
Score = 60.5 bits (145), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 55/212 (25%), Positives = 90/212 (42%), Gaps = 51/212 (24%)
Query: 27 QWMGVTCGHRHQRVTELDLSNQRIGGVLSPYVGNLSFLRYINLSDNGFHGEIPQEI---- 82
+W+G R + + L LSN G + +G+ L +++L+ N F+G IP +
Sbjct: 508 KWIG-----RLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQS 562
Query: 83 ----------------------------GNLYRLEKLELSN-NSFSGTIPTNL-SRC--- 109
GNL + + N S P N+ SR
Sbjct: 563 GKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGG 622
Query: 110 ---------SELTHLRVANNKLEGQIPKEIGSLLKLQTLALYYNNLTGQLPDFVGNLSAL 160
+ L ++ N L G IPKEIGS+ L L L +N+++G +PD VG+L L
Sbjct: 623 HTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGL 682
Query: 161 QVIYIRGNSLGGKIPTTLGLLRNLVYLNVNEN 192
++ + N L G+IP + L L ++++ N
Sbjct: 683 NILDLSSNKLDGRIPQAMSALTMLTEIDLSNN 714
>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase
Inhibiting Protein), A Leucine Rich Repeat Protein
Involved In Plant Defense
Length = 313
Score = 72.8 bits (177), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 77/272 (28%), Positives = 112/272 (41%), Gaps = 69/272 (25%)
Query: 17 SSWNNTINLCQ--WMGVTCGHRHQ--RVTELDLSNQR---------------------IG 51
SSW T + C W+GV C Q RV LDLS IG
Sbjct: 25 SSWLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIG 84
Query: 52 GV------LSPYVGNLSFLRYINLSDNGFHGEIPQEIGNLYRLEKLELSNNSFSGTIPTN 105
G+ + P + L+ L Y+ ++ G IP + + L L+ S N+ SGT+P +
Sbjct: 85 GINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPS 144
Query: 106 LSRCSELTHLRVANNKLEGQIPKEIGSLLKLQT-LALYYNNLTGQLPDFVGNLSAL---- 160
+S L + N++ G IP GS KL T + + N LTG++P NL+
Sbjct: 145 ISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDL 204
Query: 161 -------------------QVIYIRGNSLG---GKIPTTLGLLRNLVYLNVNENQFWYVS 198
Q I++ NSL GK+ GL +NL L++ N+ +
Sbjct: 205 SRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKV----GLSKNLNGLDLRNNRIY--- 257
Query: 199 SFSGSLPFDILVNLPNLKKLCIAENNFVGSIP 230
G+LP L L L L ++ NN G IP
Sbjct: 258 ---GTLP-QGLTQLKFLHSLNVSFNNLCGEIP 285
Score = 56.6 bits (135), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 53/158 (33%), Positives = 74/158 (46%), Gaps = 17/158 (10%)
Query: 258 SSLKNLAVLNLERNNLGIGTANDLGFVTFLTNCSSLKLPHSIANLSSTMTHFYIGGNQIL 317
SSL NL LN L IG N+L +P +IA L+ + + YI +
Sbjct: 70 SSLANLPYLNF----LYIGGINNL----------VGPIPPAIAKLTQ-LHYLYITHTNVS 114
Query: 318 GIIHFGIRNLVNLIALGMQSNQLHGTIPDVIGELKNLQILSLFGNFLHGSIPSSLGNLTK 377
G I + + L+ L N L GT+P I L NL ++ GN + G+IP S G+ +K
Sbjct: 115 GAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSK 174
Query: 378 L-ANLELSSNSLQGNIPLSVGNCQNLIGFDASHITLTG 414
L ++ +S N L G IP + N NL D S L G
Sbjct: 175 LFTSMTISRNRLTGKIPPTFANL-NLAFVDLSRNMLEG 211
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 70/261 (26%), Positives = 107/261 (40%), Gaps = 34/261 (13%)
Query: 150 LPDFVGNLSALQVIYIRG-NSLGGKIPTTLGLLRNLVYLNVNENQFWYVSSFSGSLPFDI 208
+P + NL L +YI G N+L G IP + L L YL + ++ SG++P D
Sbjct: 68 IPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITH------TNVSGAIP-DF 120
Query: 209 LVNLPNLKKLCIAENNFVGSIPDXXXXXXXXXXXXXXGNQFEGKVSIDFSSLKNL-AVLN 267
L + L L + N G++P GN+ G + + S L +
Sbjct: 121 LSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMT 180
Query: 268 LERNNLGIGTANDLGFVTFLTNCSSLKLPHSIANLSSTMTHFYIGGNQILGIIHFGIRNL 327
+ RN L + K+P + ANL+ + + N + G +
Sbjct: 181 ISRNRL------------------TGKIPPTFANLN--LAFVDLSRNMLEGDASVLFGSD 220
Query: 328 VNLIALGMQSNQLHGTIPDVIGELKNLQILSLFGNFLHGSIPSSLGNLTKLANLELSSNS 387
N + + N L + V G KNL L L N ++G++P L L L +L +S N+
Sbjct: 221 KNTQKIHLAKNSLAFDLGKV-GLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNN 279
Query: 388 LQGNIPLSVGNCQNLIGFDAS 408
L G IP GN Q FD S
Sbjct: 280 LCGEIPQG-GNLQR---FDVS 296
Score = 48.9 bits (115), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 41/126 (32%), Positives = 58/126 (46%), Gaps = 28/126 (22%)
Query: 295 LPHSIANLSSTMTHFYIGGNQILGIIHFGIRNLVNLIALGMQSNQLHGTIPDVIGELKNL 354
+P S+ANL + YIGG I NLV G IP I +L L
Sbjct: 68 IPSSLANLP-YLNFLYIGG----------INNLV-------------GPIPPAIAKLTQL 103
Query: 355 QILSLFGNFLHGSIPSSLGNLTKLANLELSSNSLQGNIPLSVGNCQNLIG--FDASHITL 412
L + + G+IP L + L L+ S N+L G +P S+ + NL+G FD + I
Sbjct: 104 HYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRI-- 161
Query: 413 TGALPQ 418
+GA+P
Sbjct: 162 SGAIPD 167
Score = 48.5 bits (114), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 38/130 (29%), Positives = 66/130 (50%), Gaps = 5/130 (3%)
Query: 34 GHRHQRVTELDLSNQRIGGVLSPYVGNLSFLRYINLSDNGFHGEIPQEIGNLYRLEKLEL 93
G + T + +S R+ G + P NL+ L +++LS N G+ G+ +K+ L
Sbjct: 170 GSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHL 228
Query: 94 SNNSFSGTI-PTNLSRCSELTHLRVANNKLEGQIPKEIGSLLKLQTLALYYNNLTGQLPD 152
+ NS + + LS+ L L + NN++ G +P+ + L L +L + +NNL G++P
Sbjct: 229 AKNSLAFDLGKVGLSK--NLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ 286
Query: 153 FVGNLSALQV 162
GNL V
Sbjct: 287 -GGNLQRFDV 295
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 34/128 (26%), Positives = 54/128 (42%), Gaps = 1/128 (0%)
Query: 344 IPDVIGELKNLQILSLFG-NFLHGSIPSSLGNLTKLANLELSSNSLQGNIPLSVGNCQNL 402
IP + L L L + G N L G IP ++ LT+L L ++ ++ G IP + + L
Sbjct: 68 IPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTL 127
Query: 403 IGFDASHITLTGALPQQLLSITTXXXXXXXXXXXXXXXXXXXXXXXKNLILLDISGNQFS 462
+ D S+ L+G LP + S+ K + IS N+ +
Sbjct: 128 VTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLT 187
Query: 463 GVIPVTLS 470
G IP T +
Sbjct: 188 GKIPPTFA 195
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 25/54 (46%), Positives = 30/54 (55%), Gaps = 1/54 (1%)
Query: 43 LDLSNQRIGGVLSPYVGNLSFLRYINLSDNGFHGEIPQEIGNLYRLEKLELSNN 96
LDL N RI G L + L FL +N+S N GEIPQ GNL R + +NN
Sbjct: 249 LDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG-GNLQRFDVSAYANN 301
>pdb|1O6S|A Chain A, Internalin (Listeria Monocytogenes) E-Cadherin (Human)
Recognition Complex
pdb|1O6T|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|B Chain B, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
Length = 466
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 80/276 (28%), Positives = 114/276 (41%), Gaps = 45/276 (16%)
Query: 142 YYNNLT------GQLPDF--VGNLSALQVIYIRGNSLGGKIPTTLGLLRNLVYLNVNENQ 193
Y NNLT QL D + NL+ L I + N + P L L NL L + NQ
Sbjct: 66 YLNNLTQINFSNNQLTDITPLKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQ 123
Query: 194 FWYVSSFSGSLPFDILVNLPNLKKLCIAENNFVGSIPDXXXXX-XXXXXXXXXGNQFEGK 252
+ D L NL NL +L ++ N +I D GNQ
Sbjct: 124 ITDI---------DPLKNLTNLNRLELSSN----TISDISALSGLTSLQQLSFGNQVT-- 168
Query: 253 VSIDFSSLKNLAVLNLERNNLGIGTANDLGFVTFLTNCSSL-KLPHSIANLS-----STM 306
D L NL L ER ++ +D+ + LTN SL + I++++ + +
Sbjct: 169 ---DLKPLANLTTL--ERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNL 223
Query: 307 THFYIGGNQILGIIHFGIRNLVNLIALGMQSNQLHGTIPDVIGELKNLQILSLFGNFLHG 366
+ GNQ+ I +L NL L + +NQ+ P + L L L L N +
Sbjct: 224 DELSLNGNQLKDIGTLA--SLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISN 279
Query: 367 SIPSSLGNLTKLANLELSSNSLQGNIPLSVGNCQNL 402
P L LT L NLEL+ N L+ P+S N +NL
Sbjct: 280 ISP--LAGLTALTNLELNENQLEDISPIS--NLKNL 311
Score = 32.3 bits (72), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 51/204 (25%), Positives = 92/204 (45%), Gaps = 22/204 (10%)
Query: 27 QWMGVTCGHRHQRVTELDLSNQRIGGVLSPYVGNLSFLRYINLSDNGFHGEIPQEIGNLY 86
Q +T ++ ++ ++N +I + +P + NL+ L + L +N P + NL
Sbjct: 79 QLTDITPLKNLTKLVDILMNNNQIADI-TP-LANLTNLTGLTLFNNQITDIDP--LKNLT 134
Query: 87 RLEKLELSNNSFSGTIPTNLSRCSELTHLRVANNKLEGQIPKEIGSLLKLQTLALYYNNL 146
L +LELS+N+ S ++S S LT L+ + + K + +L L+ L + N +
Sbjct: 135 NLNRLELSSNTIS-----DISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKV 189
Query: 147 TGQLPDFVGNLSALQVIYIRGNSLGGKIPTTLGLLRNLVYLNVNENQFWYVSSFSGSLPF 206
+ + L+ L+ + N + P LG+L NL L++N NQ + +
Sbjct: 190 SDI--SVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDIGT------- 238
Query: 207 DILVNLPNLKKLCIAENNFVGSIP 230
L +L NL L +A N P
Sbjct: 239 --LASLTNLTDLDLANNQISNLAP 260
>pdb|2OMU|A Chain A, Crystal Structure Of Inla G194s+s Y369s/hec1 Complex
Length = 462
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 78/275 (28%), Positives = 112/275 (40%), Gaps = 42/275 (15%)
Query: 142 YYNNLT------GQLPDF--VGNLSALQVIYIRGNSLGGKIPTTLGLLRNLVYLNVNENQ 193
Y NNLT QL D + NL+ L I + N + P L L NL L + NQ
Sbjct: 61 YLNNLTQINFSNNQLTDITPLKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQ 118
Query: 194 FWYVSSFSGSLPFDILVNLPNLKKLCIAENNFVGSIPDXXXXXXXXXXXXXXGNQFEGKV 253
+ D L NL NL +L ++ N +I D F
Sbjct: 119 ITDI---------DPLKNLTNLNRLELSSN----TISDISALSGLTSLQQL---SFSSNQ 162
Query: 254 SIDFSSLKNLAVLNLERNNLGIGTANDLGFVTFLTNCSSL-KLPHSIANLS-----STMT 307
D L NL L ER ++ +D+ + LTN SL + I++++ + +
Sbjct: 163 VTDLKPLANLTTL--ERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLD 220
Query: 308 HFYIGGNQILGIIHFGIRNLVNLIALGMQSNQLHGTIPDVIGELKNLQILSLFGNFLHGS 367
+ GNQ+ I +L NL L + +NQ+ P + L L L L N +
Sbjct: 221 ELSLNGNQLKDIGTLA--SLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNI 276
Query: 368 IPSSLGNLTKLANLELSSNSLQGNIPLSVGNCQNL 402
P L LT L NLEL+ N L+ P+S N +NL
Sbjct: 277 SP--LAGLTALTNLELNENQLEDISPIS--NLKNL 307
Score = 38.9 bits (89), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 34/106 (32%), Positives = 51/106 (48%), Gaps = 6/106 (5%)
Query: 306 MTHFYIGGNQILGIIHFGIRNLVNLIALGMQSNQLHGTIPDVIGELKNLQILSLFGNFLH 365
+T NQ+ I ++NL L+ + M +NQ+ P + L NL L+LF N +
Sbjct: 65 LTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQIT 120
Query: 366 GSIPSSLGNLTKLANLELSSNSLQGNIPLSVGNCQNLIGFDASHIT 411
P L NLT L LELSSN++ LS + F ++ +T
Sbjct: 121 DIDP--LKNLTNLNRLELSSNTISDISALSGLTSLQQLSFSSNQVT 164
Score = 35.0 bits (79), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 51/204 (25%), Positives = 93/204 (45%), Gaps = 21/204 (10%)
Query: 27 QWMGVTCGHRHQRVTELDLSNQRIGGVLSPYVGNLSFLRYINLSDNGFHGEIPQEIGNLY 86
Q +T ++ ++ ++N +I + +P + NL+ L + L +N P + NL
Sbjct: 74 QLTDITPLKNLTKLVDILMNNNQIADI-TP-LANLTNLTGLTLFNNQITDIDP--LKNLT 129
Query: 87 RLEKLELSNNSFSGTIPTNLSRCSELTHLRVANNKLEGQIPKEIGSLLKLQTLALYYNNL 146
L +LELS+N+ S + LS + L L ++N++ P + +L L+ L + N +
Sbjct: 130 NLNRLELSSNTISDI--SALSGLTSLQQLSFSSNQVTDLKP--LANLTTLERLDISSNKV 185
Query: 147 TGQLPDFVGNLSALQVIYIRGNSLGGKIPTTLGLLRNLVYLNVNENQFWYVSSFSGSLPF 206
+ + L+ L+ + N + P LG+L NL L++N NQ + +
Sbjct: 186 SD--ISVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDIGT------- 234
Query: 207 DILVNLPNLKKLCIAENNFVGSIP 230
L +L NL L +A N P
Sbjct: 235 --LASLTNLTDLDLANNQISNLAP 256
>pdb|2OMZ|A Chain A, Crystal Structure Of Inla Y369a/hec1 Complex
Length = 466
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 80/276 (28%), Positives = 114/276 (41%), Gaps = 45/276 (16%)
Query: 142 YYNNLT------GQLPDF--VGNLSALQVIYIRGNSLGGKIPTTLGLLRNLVYLNVNENQ 193
Y NNLT QL D + NL+ L I + N + P L L NL L + NQ
Sbjct: 65 YLNNLTQINFSNNQLTDITPLKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQ 122
Query: 194 FWYVSSFSGSLPFDILVNLPNLKKLCIAENNFVGSIPDXXXXX-XXXXXXXXXGNQFEGK 252
+ D L NL NL +L ++ N +I D GNQ
Sbjct: 123 ITDI---------DPLKNLTNLNRLELSSN----TISDISALSGLTSLQQLSFGNQVT-- 167
Query: 253 VSIDFSSLKNLAVLNLERNNLGIGTANDLGFVTFLTNCSSL-KLPHSIANLS-----STM 306
D L NL L ER ++ +D+ + LTN SL + I++++ + +
Sbjct: 168 ---DLKPLANLTTL--ERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNL 222
Query: 307 THFYIGGNQILGIIHFGIRNLVNLIALGMQSNQLHGTIPDVIGELKNLQILSLFGNFLHG 366
+ GNQ+ I +L NL L + +NQ+ P + L L L L N +
Sbjct: 223 DELSLNGNQLKDIGTLA--SLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISN 278
Query: 367 SIPSSLGNLTKLANLELSSNSLQGNIPLSVGNCQNL 402
P L LT L NLEL+ N L+ P+S N +NL
Sbjct: 279 ISP--LAGLTALTNLELNENQLEDISPIS--NLKNL 310
Score = 32.3 bits (72), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 51/204 (25%), Positives = 92/204 (45%), Gaps = 22/204 (10%)
Query: 27 QWMGVTCGHRHQRVTELDLSNQRIGGVLSPYVGNLSFLRYINLSDNGFHGEIPQEIGNLY 86
Q +T ++ ++ ++N +I + +P + NL+ L + L +N P + NL
Sbjct: 78 QLTDITPLKNLTKLVDILMNNNQIADI-TP-LANLTNLTGLTLFNNQITDIDP--LKNLT 133
Query: 87 RLEKLELSNNSFSGTIPTNLSRCSELTHLRVANNKLEGQIPKEIGSLLKLQTLALYYNNL 146
L +LELS+N+ S ++S S LT L+ + + K + +L L+ L + N +
Sbjct: 134 NLNRLELSSNTIS-----DISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKV 188
Query: 147 TGQLPDFVGNLSALQVIYIRGNSLGGKIPTTLGLLRNLVYLNVNENQFWYVSSFSGSLPF 206
+ + L+ L+ + N + P LG+L NL L++N NQ + +
Sbjct: 189 SDI--SVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDIGT------- 237
Query: 207 DILVNLPNLKKLCIAENNFVGSIP 230
L +L NL L +A N P
Sbjct: 238 --LASLTNLTDLDLANNQISNLAP 259
>pdb|1P8T|A Chain A, Crystal Structure Of Nogo-66 Receptor
Length = 285
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 52/205 (25%), Positives = 82/205 (40%), Gaps = 20/205 (9%)
Query: 40 VTELDLS-NQRIGGVLSPYVGNLSFLRYINLSDNGFHGEIPQEIGNLYRLEKLELSNNSF 98
+ +LDLS N ++ V L L ++L G P L L+ L L +N+
Sbjct: 81 LEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNAL 140
Query: 99 SGTIPTNLSRCSELTHLRVANNKLEGQIPKEIGSLLKLQTLALYYNNLTGQLPDFVGNLS 158
LTHL + N++ + L L L L+ N + P +L
Sbjct: 141 QALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLG 200
Query: 159 ALQVIYIRGNSLGGKIPTTLGLLRNLVYLNVNENQF---------W-YVSSFSGSLPFDI 208
L +Y+ N+L L LR L YL +N+N + W ++ F GS ++
Sbjct: 201 RLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRARPLWAWLQKFRGS-SSEV 259
Query: 209 LVNLP------NLKKLCIAENNFVG 227
+LP +LK+L A N+ G
Sbjct: 260 PCSLPQRLAGRDLKRL--AANDLQG 282
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 64/278 (23%), Positives = 99/278 (35%), Gaps = 48/278 (17%)
Query: 154 VGNLSALQVIYIRGNSLGGKIPTTLGLLRNLVYLNVNENQFWYVSSFSGSLPFDILVNLP 213
VG +A Q I++ GN + + RNL L W S+ + L
Sbjct: 27 VGIPAASQRIFLHGNRISHVPAASFRACRNLTIL-------WLHSNVLARIDAAAFTGLA 79
Query: 214 NLKKLCIAENNFVGSIPDXXXXXXXXXXXXXXGNQFEGKVSIDFSSLKNLAVLNLER--- 270
L++L +++N Q F L L L+L+R
Sbjct: 80 LLEQLDLSDNA-----------------------QLRSVDPATFHGLGRLHTLHLDRCGL 116
Query: 271 NNLGIGTANDLGFVTFL--TNCSSLKLPHSIANLSSTMTHFYIGGNQILGIIHFGIRNLV 328
LG G L + +L + + LP +TH ++ GN+I + R L
Sbjct: 117 QELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLH 176
Query: 329 NLIALGMQSNQLHGTIPDVIGELKNLQILSLFGNFLHGSIPSSLGNLTKLANLELSSNSL 388
+L L + N++ P +L L L LF N L +L L L L L+ N
Sbjct: 177 SLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPW 236
Query: 389 QGNIPLSVGNCQN------LIGFDASHITLTGALPQQL 420
V +C+ L F S + +LPQ+L
Sbjct: 237 -------VCDCRARPLWAWLQKFRGSSSEVPCSLPQRL 267
>pdb|1OZN|A Chain A, 1.5a Crystal Structure Of The Nogo Receptor Ligand Binding
Domain Reveals A Convergent Recognition Scaffold
Mediating Inhibition Of Myelination
Length = 285
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 52/205 (25%), Positives = 82/205 (40%), Gaps = 20/205 (9%)
Query: 40 VTELDLS-NQRIGGVLSPYVGNLSFLRYINLSDNGFHGEIPQEIGNLYRLEKLELSNNSF 98
+ +LDLS N ++ V L L ++L G P L L+ L L +N+
Sbjct: 82 LEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNAL 141
Query: 99 SGTIPTNLSRCSELTHLRVANNKLEGQIPKEIGSLLKLQTLALYYNNLTGQLPDFVGNLS 158
LTHL + N++ + L L L L+ N + P +L
Sbjct: 142 QALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLG 201
Query: 159 ALQVIYIRGNSLGGKIPTTLGLLRNLVYLNVNENQF---------W-YVSSFSGSLPFDI 208
L +Y+ N+L L LR L YL +N+N + W ++ F GS ++
Sbjct: 202 RLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRARPLWAWLQKFRGS-SSEV 260
Query: 209 LVNLP------NLKKLCIAENNFVG 227
+LP +LK+L A N+ G
Sbjct: 261 PCSLPQRLAGRDLKRL--AANDLQG 283
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 64/278 (23%), Positives = 99/278 (35%), Gaps = 48/278 (17%)
Query: 154 VGNLSALQVIYIRGNSLGGKIPTTLGLLRNLVYLNVNENQFWYVSSFSGSLPFDILVNLP 213
VG +A Q I++ GN + + RNL L W S+ + L
Sbjct: 28 VGIPAASQRIFLHGNRISHVPAASFRACRNLTIL-------WLHSNVLARIDAAAFTGLA 80
Query: 214 NLKKLCIAENNFVGSIPDXXXXXXXXXXXXXXGNQFEGKVSIDFSSLKNLAVLNLER--- 270
L++L +++N Q F L L L+L+R
Sbjct: 81 LLEQLDLSDNA-----------------------QLRSVDPATFHGLGRLHTLHLDRCGL 117
Query: 271 NNLGIGTANDLGFVTFL--TNCSSLKLPHSIANLSSTMTHFYIGGNQILGIIHFGIRNLV 328
LG G L + +L + + LP +TH ++ GN+I + R L
Sbjct: 118 QELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLH 177
Query: 329 NLIALGMQSNQLHGTIPDVIGELKNLQILSLFGNFLHGSIPSSLGNLTKLANLELSSNSL 388
+L L + N++ P +L L L LF N L +L L L L L+ N
Sbjct: 178 SLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPW 237
Query: 389 QGNIPLSVGNCQN------LIGFDASHITLTGALPQQL 420
V +C+ L F S + +LPQ+L
Sbjct: 238 -------VCDCRARPLWAWLQKFRGSSSEVPCSLPQRL 268
>pdb|2OMT|A Chain A, Crystal Structure Of Inla G194s+sHEC1 COMPLEX
Length = 462
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 78/275 (28%), Positives = 112/275 (40%), Gaps = 42/275 (15%)
Query: 142 YYNNLT------GQLPDF--VGNLSALQVIYIRGNSLGGKIPTTLGLLRNLVYLNVNENQ 193
Y NNLT QL D + NL+ L I + N + P L L NL L + NQ
Sbjct: 61 YLNNLTQINFSNNQLTDITPLKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQ 118
Query: 194 FWYVSSFSGSLPFDILVNLPNLKKLCIAENNFVGSIPDXXXXXXXXXXXXXXGNQFEGKV 253
+ D L NL NL +L ++ N +I D F
Sbjct: 119 ITDI---------DPLKNLTNLNRLELSSN----TISDISALSGLTSLQQL---SFSSNQ 162
Query: 254 SIDFSSLKNLAVLNLERNNLGIGTANDLGFVTFLTNCSSL-KLPHSIANLS-----STMT 307
D L NL L ER ++ +D+ + LTN SL + I++++ + +
Sbjct: 163 VTDLKPLANLTTL--ERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLD 220
Query: 308 HFYIGGNQILGIIHFGIRNLVNLIALGMQSNQLHGTIPDVIGELKNLQILSLFGNFLHGS 367
+ GNQ+ I +L NL L + +NQ+ P + L L L L N +
Sbjct: 221 ELSLNGNQLKDIGTLA--SLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNI 276
Query: 368 IPSSLGNLTKLANLELSSNSLQGNIPLSVGNCQNL 402
P L LT L NLEL+ N L+ P+S N +NL
Sbjct: 277 SP--LAGLTALTNLELNENQLEDISPIS--NLKNL 307
Score = 38.9 bits (89), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 34/106 (32%), Positives = 51/106 (48%), Gaps = 6/106 (5%)
Query: 306 MTHFYIGGNQILGIIHFGIRNLVNLIALGMQSNQLHGTIPDVIGELKNLQILSLFGNFLH 365
+T NQ+ I ++NL L+ + M +NQ+ P + L NL L+LF N +
Sbjct: 65 LTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQIT 120
Query: 366 GSIPSSLGNLTKLANLELSSNSLQGNIPLSVGNCQNLIGFDASHIT 411
P L NLT L LELSSN++ LS + F ++ +T
Sbjct: 121 DIDP--LKNLTNLNRLELSSNTISDISALSGLTSLQQLSFSSNQVT 164
Score = 35.0 bits (79), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 51/204 (25%), Positives = 93/204 (45%), Gaps = 21/204 (10%)
Query: 27 QWMGVTCGHRHQRVTELDLSNQRIGGVLSPYVGNLSFLRYINLSDNGFHGEIPQEIGNLY 86
Q +T ++ ++ ++N +I + +P + NL+ L + L +N P + NL
Sbjct: 74 QLTDITPLKNLTKLVDILMNNNQIADI-TP-LANLTNLTGLTLFNNQITDIDP--LKNLT 129
Query: 87 RLEKLELSNNSFSGTIPTNLSRCSELTHLRVANNKLEGQIPKEIGSLLKLQTLALYYNNL 146
L +LELS+N+ S + LS + L L ++N++ P + +L L+ L + N +
Sbjct: 130 NLNRLELSSNTISDI--SALSGLTSLQQLSFSSNQVTDLKP--LANLTTLERLDISSNKV 185
Query: 147 TGQLPDFVGNLSALQVIYIRGNSLGGKIPTTLGLLRNLVYLNVNENQFWYVSSFSGSLPF 206
+ + L+ L+ + N + P LG+L NL L++N NQ + +
Sbjct: 186 SD--ISVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDIGT------- 234
Query: 207 DILVNLPNLKKLCIAENNFVGSIP 230
L +L NL L +A N P
Sbjct: 235 --LASLTNLTDLDLANNQISNLAP 256
>pdb|2OMV|A Chain A, Crystal Structure Of Inla S192n Y369s/hec1 Complex
pdb|2OMW|A Chain A, Crystal Structure Of Inla S192n Y369s/mec1 Complex
Length = 461
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 80/276 (28%), Positives = 114/276 (41%), Gaps = 45/276 (16%)
Query: 142 YYNNLT------GQLPDF--VGNLSALQVIYIRGNSLGGKIPTTLGLLRNLVYLNVNENQ 193
Y NNLT QL D + NL+ L I + N + P L L NL L + NQ
Sbjct: 61 YLNNLTQINFSNNQLTDITPLKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQ 118
Query: 194 FWYVSSFSGSLPFDILVNLPNLKKLCIAENNFVGSIPDXXXXX-XXXXXXXXXGNQFEGK 252
+ D L NL NL +L ++ N +I D GNQ
Sbjct: 119 ITDI---------DPLKNLTNLNRLELSSN----TISDISALSGLTSLQQLNFGNQV--- 162
Query: 253 VSIDFSSLKNLAVLNLERNNLGIGTANDLGFVTFLTNCSSL-KLPHSIANLS-----STM 306
D L NL L ER ++ +D+ + LTN SL + I++++ + +
Sbjct: 163 --TDLKPLANLTTL--ERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNL 218
Query: 307 THFYIGGNQILGIIHFGIRNLVNLIALGMQSNQLHGTIPDVIGELKNLQILSLFGNFLHG 366
+ GNQ+ I +L NL L + +NQ+ P + L L L L N +
Sbjct: 219 DELSLNGNQLKDIGTLA--SLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISN 274
Query: 367 SIPSSLGNLTKLANLELSSNSLQGNIPLSVGNCQNL 402
P L LT L NLEL+ N L+ P+S N +NL
Sbjct: 275 ISP--LAGLTALTNLELNENQLEDISPIS--NLKNL 306
Score = 34.3 bits (77), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 52/204 (25%), Positives = 92/204 (45%), Gaps = 22/204 (10%)
Query: 27 QWMGVTCGHRHQRVTELDLSNQRIGGVLSPYVGNLSFLRYINLSDNGFHGEIPQEIGNLY 86
Q +T ++ ++ ++N +I + +P + NL+ L + L +N P + NL
Sbjct: 74 QLTDITPLKNLTKLVDILMNNNQIADI-TP-LANLTNLTGLTLFNNQITDIDP--LKNLT 129
Query: 87 RLEKLELSNNSFSGTIPTNLSRCSELTHLRVANNKLEGQIPKEIGSLLKLQTLALYYNNL 146
L +LELS+N+ S ++S S LT L+ N + K + +L L+ L + N +
Sbjct: 130 NLNRLELSSNTIS-----DISALSGLTSLQQLNFGNQVTDLKPLANLTTLERLDISSNKV 184
Query: 147 TGQLPDFVGNLSALQVIYIRGNSLGGKIPTTLGLLRNLVYLNVNENQFWYVSSFSGSLPF 206
+ + L+ L+ + N + P LG+L NL L++N NQ + +
Sbjct: 185 SD--ISVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDIGT------- 233
Query: 207 DILVNLPNLKKLCIAENNFVGSIP 230
L +L NL L +A N P
Sbjct: 234 --LASLTNLTDLDLANNQISNLAP 255
>pdb|2OMX|A Chain A, Crystal Structure Of Inla S192n G194s+sHEC1 COMPLEX
Length = 462
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 78/275 (28%), Positives = 112/275 (40%), Gaps = 42/275 (15%)
Query: 142 YYNNLT------GQLPDF--VGNLSALQVIYIRGNSLGGKIPTTLGLLRNLVYLNVNENQ 193
Y NNLT QL D + NL+ L I + N + P L L NL L + NQ
Sbjct: 61 YLNNLTQINFSNNQLTDITPLKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQ 118
Query: 194 FWYVSSFSGSLPFDILVNLPNLKKLCIAENNFVGSIPDXXXXXXXXXXXXXXGNQFEGKV 253
+ D L NL NL +L ++ N +I D F
Sbjct: 119 ITDI---------DPLKNLTNLNRLELSSN----TISDISALSGLTSLQQL---NFSSNQ 162
Query: 254 SIDFSSLKNLAVLNLERNNLGIGTANDLGFVTFLTNCSSL-KLPHSIANLS-----STMT 307
D L NL L ER ++ +D+ + LTN SL + I++++ + +
Sbjct: 163 VTDLKPLANLTTL--ERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLD 220
Query: 308 HFYIGGNQILGIIHFGIRNLVNLIALGMQSNQLHGTIPDVIGELKNLQILSLFGNFLHGS 367
+ GNQ+ I +L NL L + +NQ+ P + L L L L N +
Sbjct: 221 ELSLNGNQLKDIGTLA--SLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNI 276
Query: 368 IPSSLGNLTKLANLELSSNSLQGNIPLSVGNCQNL 402
P L LT L NLEL+ N L+ P+S N +NL
Sbjct: 277 SP--LAGLTALTNLELNENQLEDISPIS--NLKNL 307
Score = 38.5 bits (88), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 34/106 (32%), Positives = 51/106 (48%), Gaps = 6/106 (5%)
Query: 306 MTHFYIGGNQILGIIHFGIRNLVNLIALGMQSNQLHGTIPDVIGELKNLQILSLFGNFLH 365
+T NQ+ I ++NL L+ + M +NQ+ P + L NL L+LF N +
Sbjct: 65 LTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQIT 120
Query: 366 GSIPSSLGNLTKLANLELSSNSLQGNIPLSVGNCQNLIGFDASHIT 411
P L NLT L LELSSN++ LS + F ++ +T
Sbjct: 121 DIDP--LKNLTNLNRLELSSNTISDISALSGLTSLQQLNFSSNQVT 164
Score = 35.0 bits (79), Expect = 0.092, Method: Compositional matrix adjust.
Identities = 51/204 (25%), Positives = 93/204 (45%), Gaps = 21/204 (10%)
Query: 27 QWMGVTCGHRHQRVTELDLSNQRIGGVLSPYVGNLSFLRYINLSDNGFHGEIPQEIGNLY 86
Q +T ++ ++ ++N +I + +P + NL+ L + L +N P + NL
Sbjct: 74 QLTDITPLKNLTKLVDILMNNNQIADI-TP-LANLTNLTGLTLFNNQITDIDP--LKNLT 129
Query: 87 RLEKLELSNNSFSGTIPTNLSRCSELTHLRVANNKLEGQIPKEIGSLLKLQTLALYYNNL 146
L +LELS+N+ S + LS + L L ++N++ P + +L L+ L + N +
Sbjct: 130 NLNRLELSSNTISDI--SALSGLTSLQQLNFSSNQVTDLKP--LANLTTLERLDISSNKV 185
Query: 147 TGQLPDFVGNLSALQVIYIRGNSLGGKIPTTLGLLRNLVYLNVNENQFWYVSSFSGSLPF 206
+ + L+ L+ + N + P LG+L NL L++N NQ + +
Sbjct: 186 SD--ISVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDIGT------- 234
Query: 207 DILVNLPNLKKLCIAENNFVGSIP 230
L +L NL L +A N P
Sbjct: 235 --LASLTNLTDLDLANNQISNLAP 256
>pdb|2OMY|A Chain A, Crystal Structure Of Inla S192n/hec1 Complex
Length = 461
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 80/276 (28%), Positives = 114/276 (41%), Gaps = 45/276 (16%)
Query: 142 YYNNLT------GQLPDF--VGNLSALQVIYIRGNSLGGKIPTTLGLLRNLVYLNVNENQ 193
Y NNLT QL D + NL+ L I + N + P L L NL L + NQ
Sbjct: 61 YLNNLTQINFSNNQLTDITPLKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQ 118
Query: 194 FWYVSSFSGSLPFDILVNLPNLKKLCIAENNFVGSIPDXXXXX-XXXXXXXXXGNQFEGK 252
+ D L NL NL +L ++ N +I D GNQ
Sbjct: 119 ITDI---------DPLKNLTNLNRLELSSN----TISDISALSGLTSLQQLNFGNQVT-- 163
Query: 253 VSIDFSSLKNLAVLNLERNNLGIGTANDLGFVTFLTNCSSL-KLPHSIANLS-----STM 306
D L NL L ER ++ +D+ + LTN SL + I++++ + +
Sbjct: 164 ---DLKPLANLTTL--ERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNL 218
Query: 307 THFYIGGNQILGIIHFGIRNLVNLIALGMQSNQLHGTIPDVIGELKNLQILSLFGNFLHG 366
+ GNQ+ I +L NL L + +NQ+ P + L L L L N +
Sbjct: 219 DELSLNGNQLKDIGTLA--SLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISN 274
Query: 367 SIPSSLGNLTKLANLELSSNSLQGNIPLSVGNCQNL 402
P L LT L NLEL+ N L+ P+S N +NL
Sbjct: 275 ISP--LAGLTALTNLELNENQLEDISPIS--NLKNL 306
Score = 34.3 bits (77), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 52/204 (25%), Positives = 92/204 (45%), Gaps = 22/204 (10%)
Query: 27 QWMGVTCGHRHQRVTELDLSNQRIGGVLSPYVGNLSFLRYINLSDNGFHGEIPQEIGNLY 86
Q +T ++ ++ ++N +I + +P + NL+ L + L +N P + NL
Sbjct: 74 QLTDITPLKNLTKLVDILMNNNQIADI-TP-LANLTNLTGLTLFNNQITDIDP--LKNLT 129
Query: 87 RLEKLELSNNSFSGTIPTNLSRCSELTHLRVANNKLEGQIPKEIGSLLKLQTLALYYNNL 146
L +LELS+N+ S ++S S LT L+ N + K + +L L+ L + N +
Sbjct: 130 NLNRLELSSNTIS-----DISALSGLTSLQQLNFGNQVTDLKPLANLTTLERLDISSNKV 184
Query: 147 TGQLPDFVGNLSALQVIYIRGNSLGGKIPTTLGLLRNLVYLNVNENQFWYVSSFSGSLPF 206
+ + L+ L+ + N + P LG+L NL L++N NQ + +
Sbjct: 185 SD--ISVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDIGT------- 233
Query: 207 DILVNLPNLKKLCIAENNFVGSIP 230
L +L NL L +A N P
Sbjct: 234 --LASLTNLTDLDLANNQISNLAP 255
>pdb|2O6Q|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors A29
Length = 270
Score = 42.7 bits (99), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 49/187 (26%), Positives = 77/187 (41%), Gaps = 9/187 (4%)
Query: 40 VTELDLSNQRIGGVLSPYVGNLSFLRYINLSDNGFHGEIPQEI-GNLYRLEKLELSNNSF 98
+LDL + ++ + S L+ LR + L+DN +P I L LE L +++N
Sbjct: 39 TKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQT-LPAGIFKELKNLETLWVTDNKL 97
Query: 99 SGTIPTNLSRCSELTHLRVANNKLEGQIPKEIGSLLKLQTLALYYNNLTGQLPDFVGNLS 158
+ L LR+ N+L+ P+ SL KL L+L YN L L+
Sbjct: 98 QALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLT 157
Query: 159 ALQVIYIRGNSLGGKIPTTLGLLRNLVYLNVNENQFWYVSSFSGSLPFDILVNLPNLKKL 218
+L+ + + N L L L L ++ NQ V P +L LK L
Sbjct: 158 SLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRV-------PEGAFDSLEKLKML 210
Query: 219 CIAENNF 225
+ EN +
Sbjct: 211 QLQENPW 217
Score = 37.4 bits (85), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 28/105 (26%), Positives = 42/105 (40%)
Query: 289 NCSSLKLPHSIANLSSTMTHFYIGGNQILGIIHFGIRNLVNLIALGMQSNQLHGTIPDVI 348
+CSS KL +N+ + + N++ + L L L + N+L +
Sbjct: 22 DCSSKKLTAIPSNIPADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIF 81
Query: 349 GELKNLQILSLFGNFLHGSIPSSLGNLTKLANLELSSNSLQGNIP 393
ELKNL+ L + N L L LA L L N L+ P
Sbjct: 82 KELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPP 126
Score = 35.4 bits (80), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 37/95 (38%)
Query: 295 LPHSIANLSSTMTHFYIGGNQILGIIHFGIRNLVNLIALGMQSNQLHGTIPDVIGELKNL 354
LP I + ++ N++ + LVNL L + NQL P V L L
Sbjct: 76 LPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKL 135
Query: 355 QILSLFGNFLHGSIPSSLGNLTKLANLELSSNSLQ 389
LSL N L LT L L L +N L+
Sbjct: 136 TYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLK 170
Score = 33.9 bits (76), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 40/95 (42%)
Query: 295 LPHSIANLSSTMTHFYIGGNQILGIIHFGIRNLVNLIALGMQSNQLHGTIPDVIGELKNL 354
LP + + + Y+ N++ + + L NL L + N+L V +L NL
Sbjct: 52 LPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNL 111
Query: 355 QILSLFGNFLHGSIPSSLGNLTKLANLELSSNSLQ 389
L L N L P +LTKL L L N LQ
Sbjct: 112 AELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQ 146
Score = 33.5 bits (75), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 49/185 (26%), Positives = 76/185 (41%), Gaps = 11/185 (5%)
Query: 89 EKLELSNNSFSGTIPTNLSRCSELTHLRVANNKLEGQIPKEIGSLLK-LQTLALYYNNLT 147
+KL+L +N S R ++L L + +NKL+ +P I LK L+TL + N L
Sbjct: 40 KKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQ-TLPAGIFKELKNLETLWVTDNKLQ 98
Query: 148 GQLPDFVGNLSALQVIYIRGNSLGGKIPTTLGLLRNLVYLNVNENQFWYVSSFSGSLPFD 207
L L + + N L P L L YL++ N+ SLP
Sbjct: 99 ALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNEL-------QSLPKG 151
Query: 208 ILVNLPNLKKLCIAENNFVGSIPD-XXXXXXXXXXXXXXGNQFEGKVSIDFSSLKNLAVL 266
+ L +LK+L + NN + +P+ NQ + F SL+ L +L
Sbjct: 152 VFDKLTSLKELRLY-NNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKML 210
Query: 267 NLERN 271
L+ N
Sbjct: 211 QLQEN 215
Score = 32.3 bits (72), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 30/111 (27%), Positives = 46/111 (41%), Gaps = 5/111 (4%)
Query: 257 FSSLKNLAVLNLERNNLGIGTANDLGFVTFLTNCS----SLK-LPHSIANLSSTMTHFYI 311
F L NLA L L+RN L +T LT S L+ LP + + +++ +
Sbjct: 105 FDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRL 164
Query: 312 GGNQILGIIHFGIRNLVNLIALGMQSNQLHGTIPDVIGELKNLQILSLFGN 362
NQ+ + L L L + +NQL L+ L++L L N
Sbjct: 165 YNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQEN 215
Score = 31.6 bits (70), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 35/133 (26%), Positives = 53/133 (39%), Gaps = 19/133 (14%)
Query: 257 FSSLKNLAVLNLERNNLGIGTANDLGFVTFLTNCSSLKLPHSIANLSSTMTHFYIGGNQI 316
F LKNL L + N L A +G L N + L+L NQ+
Sbjct: 81 FKELKNLETLWVTDNKL---QALPIGVFDQLVNLAELRLDR----------------NQL 121
Query: 317 LGIIHFGIRNLVNLIALGMQSNQLHGTIPDVIGELKNLQILSLFGNFLHGSIPSSLGNLT 376
+ +L L L + N+L V +L +L+ L L+ N L + LT
Sbjct: 122 KSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLT 181
Query: 377 KLANLELSSNSLQ 389
+L L+L +N L+
Sbjct: 182 ELKTLKLDNNQLK 194
>pdb|2O6S|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
pdb|2O6S|B Chain B, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
Length = 208
Score = 42.0 bits (97), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 34/121 (28%), Positives = 58/121 (47%), Gaps = 3/121 (2%)
Query: 270 RNNLGIGTANDLGFVTFLTNCSSLK-LPHSIANLSSTMTHFYIGGNQILGIIHFGIRNLV 328
R ++ G ++ TN SLK LP+ + + +++T Y+GGN++ + + L
Sbjct: 19 RTSVPTGIPAQTTYLDLETN--SLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLT 76
Query: 329 NLIALGMQSNQLHGTIPDVIGELKNLQILSLFGNFLHGSIPSSLGNLTKLANLELSSNSL 388
+L L + +NQL V +L L+ L+L N L LT+L +L L N L
Sbjct: 77 SLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQL 136
Query: 389 Q 389
+
Sbjct: 137 K 137
Score = 35.8 bits (81), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 38/150 (25%), Positives = 65/150 (43%), Gaps = 7/150 (4%)
Query: 250 EGKVSIDFSSLKNLAVLNLERNNLGI---GTANDLGFVT--FLTNCSSLKLPHSIANLSS 304
+G+ S+ L+LE N+L G ++L +T +L LP+ + N +
Sbjct: 17 QGRTSVPTGIPAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLT 76
Query: 305 TMTHFYIGGNQILGIIHFGIRNLVNLIALGMQSNQLHGTIPD-VIGELKNLQILSLFGNF 363
++T+ + NQ+ + + L L L + +NQL ++PD V +L L+ L L+ N
Sbjct: 77 SLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQ-SLPDGVFDKLTQLKDLRLYQNQ 135
Query: 364 LHGSIPSSLGNLTKLANLELSSNSLQGNIP 393
L LT L + L N P
Sbjct: 136 LKSVPDGVFDRLTSLQYIWLHDNPWDCTCP 165
Score = 29.6 bits (65), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 36/139 (25%), Positives = 57/139 (41%), Gaps = 4/139 (2%)
Query: 39 RVTELDLSNQRIGGVLSPYVGNLSFLRYINLSDNGFHGEIPQEIGN-LYRLEKLELSNNS 97
+ T LDL + + + L+ L + L N +P + N L L L LS N
Sbjct: 29 QTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQ-SLPNGVFNKLTSLTYLNLSTNQ 87
Query: 98 FSGTIPTNLSRCSELTHLRVANNKLEGQIPKEIGSLLKLQTLALYYNNLTGQLPDFV-GN 156
+ ++L L + N+L+ L +L+ L LY N L +PD V
Sbjct: 88 LQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKS-VPDGVFDR 146
Query: 157 LSALQVIYIRGNSLGGKIP 175
L++LQ I++ N P
Sbjct: 147 LTSLQYIWLHDNPWDCTCP 165
>pdb|3KJ4|A Chain A, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
Antibody
pdb|3KJ4|D Chain D, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
Antibody
Length = 286
Score = 42.0 bits (97), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 50/200 (25%), Positives = 81/200 (40%), Gaps = 18/200 (9%)
Query: 40 VTELDLSNQRIGGVLSPYV-GNLSFLRYINLSDNGFHGEIPQEIGNLYRLEKLELSNNSF 98
+ +LDLS+ V+ P L L ++L G P L L+ L L +N+
Sbjct: 81 LEQLDLSDNAQLRVVDPTTFRGLGHLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNNL 140
Query: 99 SGTIPTNLSRCSELTHLRVANNKLEGQIPKEIGSLLKLQTLALYYNNLTGQLPDFVGNLS 158
LTHL + N++ L L L L+ N++ P +L
Sbjct: 141 QALPDNTFRDLGNLTHLFLHGNRIPSVPEHAFRGLHSLDRLLLHQNHVARVHPHAFRDLG 200
Query: 159 ALQVIYIRGNSLGGKIPTTLGLLRNLVYLNVNENQF---------W-YVSSFSGSLPFDI 208
L +Y+ N+L L LR+L YL +N+N + W ++ F GS ++
Sbjct: 201 RLMTLYLFANNLSMLPAEVLVPLRSLQYLRLNDNPWVCDCRARPLWAWLQKFRGS-SSEV 259
Query: 209 LVNLP------NLKKLCIAE 222
NLP +LK+L ++
Sbjct: 260 PCNLPQRLAGRDLKRLAASD 279
Score = 35.8 bits (81), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 37/135 (27%), Positives = 55/135 (40%), Gaps = 5/135 (3%)
Query: 257 FSSLKNLAVLNLER---NNLGIGTANDLGFVTFL--TNCSSLKLPHSIANLSSTMTHFYI 311
F L +L L+L+R LG G L + +L + + LP + +TH ++
Sbjct: 100 FRGLGHLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNNLQALPDNTFRDLGNLTHLFL 159
Query: 312 GGNQILGIIHFGIRNLVNLIALGMQSNQLHGTIPDVIGELKNLQILSLFGNFLHGSIPSS 371
GN+I + R L +L L + N + P +L L L LF N L
Sbjct: 160 HGNRIPSVPEHAFRGLHSLDRLLLHQNHVARVHPHAFRDLGRLMTLYLFANNLSMLPAEV 219
Query: 372 LGNLTKLANLELSSN 386
L L L L L+ N
Sbjct: 220 LVPLRSLQYLRLNDN 234
Score = 28.9 bits (63), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 44/149 (29%), Positives = 59/149 (39%), Gaps = 10/149 (6%)
Query: 246 GNQFEGKVSIDFSSLKNLAVLNLERNNL-GIGTANDLGFVTF----LTNCSSLKL--PHS 298
GN+ + F S +NL +L L N L GI A G L++ + L++ P +
Sbjct: 40 GNRISYVPAASFQSCRNLTILWLHSNALAGIDAAAFTGLTLLEQLDLSDNAQLRVVDPTT 99
Query: 299 IANLSSTMT-HFYIGGNQILGIIHFGIRNLVNLIALGMQSNQLHGTIPDVIGELKNLQIL 357
L T H G Q LG F R L L L +Q N L + +L NL L
Sbjct: 100 FRGLGHLHTLHLDRCGLQELGPGLF--RGLAALQYLYLQDNNLQALPDNTFRDLGNLTHL 157
Query: 358 SLFGNFLHGSIPSSLGNLTKLANLELSSN 386
L GN + + L L L L N
Sbjct: 158 FLHGNRIPSVPEHAFRGLHSLDRLLLHQN 186
>pdb|4B8C|D Chain D, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|J Chain J, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|K Chain K, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|L Chain L, Nuclease Module Of The Yeast Ccr4-Not Complex
Length = 727
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 40/146 (27%), Positives = 61/146 (41%), Gaps = 28/146 (19%)
Query: 29 MGVTCGHRHQRVTELDLSNQRIGGVLSPYVGNLSFLRYINLSDNGFHGEIPQEIGNLYRL 88
M + Q LDLSN +I + S + FL + L+ N E+P EI NL L
Sbjct: 215 MPKDSKYDDQLWHALDLSNLQIFNI-SANIFKYDFLTRLYLNGNSL-TELPAEIKNLSNL 272
Query: 89 EKLELSNNSFSGTIPTNLSRCSELTHLRVANNKLEGQIPKEIGSLLKLQTLALYYNNLTG 148
L+LS+N + +P E+GS +L+ +++N+
Sbjct: 273 RVLDLSHNRLTS-------------------------LPAELGSCFQLKYF-YFFDNMVT 306
Query: 149 QLPDFVGNLSALQVIYIRGNSLGGKI 174
LP GNL LQ + + GN L +
Sbjct: 307 TLPWEFGNLCNLQFLGVEGNPLEKQF 332
>pdb|3M19|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
pdb|3M19|B Chain B, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
Length = 251
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 40/137 (29%), Positives = 55/137 (40%), Gaps = 5/137 (3%)
Query: 257 FSSLKNLAVLNLERNNL---GIGTANDLGFVTFL--TNCSSLKLPHSIANLSSTMTHFYI 311
F L L LNL+ N L G +DL + L N LP + + + + Y+
Sbjct: 55 FRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYL 114
Query: 312 GGNQILGIIHFGIRNLVNLIALGMQSNQLHGTIPDVIGELKNLQILSLFGNFLHGSIPSS 371
GGNQ+ + L L L + +NQL +L NLQ LSL N L +
Sbjct: 115 GGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGA 174
Query: 372 LGNLTKLANLELSSNSL 388
L KL + L N
Sbjct: 175 FDRLGKLQTITLFGNQF 191
Score = 33.5 bits (75), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 40/167 (23%), Positives = 70/167 (41%), Gaps = 6/167 (3%)
Query: 4 TGIPHQHDPSGVTSSWNNTINLCQWMGVTCGHRHQRVTELDLSNQRIGGVLSPYVGNLSF 63
+GIP + + S+ T++ + G+T ++T L+L ++ + + +L+
Sbjct: 31 SGIPADTEKLDLQSTGLATLSDATFRGLT------KLTWLNLDYNQLQTLSAGVFDDLTE 84
Query: 64 LRYINLSDNGFHGEIPQEIGNLYRLEKLELSNNSFSGTIPTNLSRCSELTHLRVANNKLE 123
L + L++N +L +L+KL L N R ++L LR+ N+L+
Sbjct: 85 LGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQ 144
Query: 124 GQIPKEIGSLLKLQTLALYYNNLTGQLPDFVGNLSALQVIYIRGNSL 170
L LQTL+L N L L LQ I + GN
Sbjct: 145 SIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQF 191
Score = 32.7 bits (73), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 32/91 (35%), Positives = 45/91 (49%), Gaps = 3/91 (3%)
Query: 304 STMTHFYIGGNQILGIIHFGIRNLVNLIALGMQSNQLHGTIPDVIGELKNLQILSLFGNF 363
+ +T + NQ+ + +L L LG+ +NQL V L L L L GN
Sbjct: 59 TKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQ 118
Query: 364 LHGSIPSSL-GNLTKLANLELSSNSLQGNIP 393
L S+PS + LTKL L L++N LQ +IP
Sbjct: 119 LK-SLPSGVFDRLTKLKELRLNTNQLQ-SIP 147
Score = 31.6 bits (70), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 34/127 (26%), Positives = 51/127 (40%), Gaps = 4/127 (3%)
Query: 89 EKLELSNNSFSGTIPTNLSRCSELTHLRVANNKLEGQIPKEIGSLLKLQTLALYYNNLTG 148
EKL+L + + ++LT L + N+L+ L +L TL L N L
Sbjct: 38 EKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLAS 97
Query: 149 QLPDFVGNLSALQVIYIRGNSLGGKIPTTLGLLRNLVYLNVNENQFWYVSSFSGSLPFDI 208
+L+ L +Y+ GN L L L L +N NQ + + + FD
Sbjct: 98 LPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGA----FDK 153
Query: 209 LVNLPNL 215
L NL L
Sbjct: 154 LTNLQTL 160
>pdb|3M18|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R2.1 In Complex With Hen Egg Lysozyme
Length = 251
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 40/137 (29%), Positives = 55/137 (40%), Gaps = 5/137 (3%)
Query: 257 FSSLKNLAVLNLERNNL---GIGTANDLGFVTFL--TNCSSLKLPHSIANLSSTMTHFYI 311
F L L LNL+ N L G +DL + L N LP + + + + Y+
Sbjct: 55 FRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYL 114
Query: 312 GGNQILGIIHFGIRNLVNLIALGMQSNQLHGTIPDVIGELKNLQILSLFGNFLHGSIPSS 371
GGNQ+ + L L L + +NQL +L NLQ LSL N L +
Sbjct: 115 GGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGA 174
Query: 372 LGNLTKLANLELSSNSL 388
L KL + L N
Sbjct: 175 FDRLGKLQTITLFGNQF 191
Score = 33.5 bits (75), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 40/167 (23%), Positives = 70/167 (41%), Gaps = 6/167 (3%)
Query: 4 TGIPHQHDPSGVTSSWNNTINLCQWMGVTCGHRHQRVTELDLSNQRIGGVLSPYVGNLSF 63
+GIP + + S+ T++ + G+T ++T L+L ++ + + +L+
Sbjct: 31 SGIPADTEKLDLQSTGLATLSDATFRGLT------KLTWLNLDYNQLQTLSAGVFDDLTE 84
Query: 64 LRYINLSDNGFHGEIPQEIGNLYRLEKLELSNNSFSGTIPTNLSRCSELTHLRVANNKLE 123
L + L++N +L +L+KL L N R ++L LR+ N+L+
Sbjct: 85 LGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQ 144
Query: 124 GQIPKEIGSLLKLQTLALYYNNLTGQLPDFVGNLSALQVIYIRGNSL 170
L LQTL+L N L L LQ I + GN
Sbjct: 145 SIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQF 191
Score = 32.7 bits (73), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 32/91 (35%), Positives = 45/91 (49%), Gaps = 3/91 (3%)
Query: 304 STMTHFYIGGNQILGIIHFGIRNLVNLIALGMQSNQLHGTIPDVIGELKNLQILSLFGNF 363
+ +T + NQ+ + +L L LG+ +NQL V L L L L GN
Sbjct: 59 TKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQ 118
Query: 364 LHGSIPSSL-GNLTKLANLELSSNSLQGNIP 393
L S+PS + LTKL L L++N LQ +IP
Sbjct: 119 LK-SLPSGVFDRLTKLKELRLNTNQLQ-SIP 147
Score = 31.2 bits (69), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 37/142 (26%), Positives = 57/142 (40%), Gaps = 8/142 (5%)
Query: 89 EKLELSNNSFSGTIPTNLSRCSELTHLRVANNKLEGQIPKEIGSLLKLQTLALYYNNLTG 148
EKL+L + + ++LT L + N+L+ L +L TL L N L
Sbjct: 38 EKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLAS 97
Query: 149 QLPDFVGNLSALQVIYIRGNSLGGKIPTTLGLLRNLVYLNVNENQFWYVSSFSGSLPFDI 208
+L+ L +Y+ GN L L L L +N NQ S+P
Sbjct: 98 LPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQ-------SIPAGA 150
Query: 209 LVNLPNLKKLCIAENNFVGSIP 230
L NL+ L ++ N + S+P
Sbjct: 151 FDKLTNLQTLSLSTNQ-LQSVP 171
>pdb|3RFJ|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 279
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 32/97 (32%), Positives = 47/97 (48%), Gaps = 4/97 (4%)
Query: 297 HSIANLS--STMTHFYIGGNQILGIIHFGIRNLVNLIALGMQSNQLHGTIPD-VIGELKN 353
H I+ L + +T+ + GNQ+ + + L NL L + NQL ++PD V +L N
Sbjct: 76 HDISALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQ-SLPDGVFDKLTN 134
Query: 354 LQILSLFGNFLHGSIPSSLGNLTKLANLELSSNSLQG 390
L L L+ N L LT L L+L +N LQ
Sbjct: 135 LTYLYLYHNQLQSLPKGVFDKLTNLTRLDLDNNQLQS 171
Score = 35.0 bits (79), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 38/127 (29%), Positives = 56/127 (44%), Gaps = 10/127 (7%)
Query: 106 LSRCSELTHLRVANNKLEGQIPKEIGSLLKLQTLALYYNNLTGQLPDFV-GNLSALQVIY 164
L + LT+L + N+L+ L L+ L L N L LPD V L+ L +Y
Sbjct: 81 LKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQS-LPDGVFDKLTNLTYLY 139
Query: 165 IRGNSLGGKIPTTLGLLRNLVYLNVNENQFWYVSSFSGSLPFDILVNLPNLKKLCIAENN 224
+ N L L NL L+++ NQ SLP + L LK+L + +N
Sbjct: 140 LYHNQLQSLPKGVFDKLTNLTRLDLDNNQL-------QSLPEGVFDKLTQLKQLSLNDNQ 192
Query: 225 FVGSIPD 231
+ S+PD
Sbjct: 193 -LKSVPD 198
Score = 34.3 bits (77), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 41/92 (44%)
Query: 295 LPHSIANLSSTMTHFYIGGNQILGIIHFGIRNLVNLIALGMQSNQLHGTIPDVIGELKNL 354
LP + + + +T+ Y+ NQ+ + L NL L + +NQL V +L L
Sbjct: 124 LPDGVFDKLTNLTYLYLYHNQLQSLPKGVFDKLTNLTRLDLDNNQLQSLPEGVFDKLTQL 183
Query: 355 QILSLFGNFLHGSIPSSLGNLTKLANLELSSN 386
+ LSL N L LT L ++ L +N
Sbjct: 184 KQLSLNDNQLKSVPDGVFDRLTSLTHIWLLNN 215
Score = 32.3 bits (72), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 37/144 (25%), Positives = 58/144 (40%), Gaps = 9/144 (6%)
Query: 256 DFSSLKNLAVL-NLERNNLGIGTANDLGFVTFLTNCSSL--------KLPHSIANLSSTM 306
D S++ + L N+ LG +D+ + LTN + L LP+ + + + +
Sbjct: 52 DIKSVQGIQYLPNVRYLALGGNKLHDISALKELTNLTYLILTGNQLQSLPNGVFDKLTNL 111
Query: 307 THFYIGGNQILGIIHFGIRNLVNLIALGMQSNQLHGTIPDVIGELKNLQILSLFGNFLHG 366
+ NQ+ + L NL L + NQL V +L NL L L N L
Sbjct: 112 KELVLVENQLQSLPDGVFDKLTNLTYLYLYHNQLQSLPKGVFDKLTNLTRLDLDNNQLQS 171
Query: 367 SIPSSLGNLTKLANLELSSNSLQG 390
LT+L L L+ N L+
Sbjct: 172 LPEGVFDKLTQLKQLSLNDNQLKS 195
>pdb|3RFS|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
pdb|3RFS|B Chain B, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 272
Score = 38.9 bits (89), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 33/97 (34%), Positives = 47/97 (48%), Gaps = 4/97 (4%)
Query: 297 HSIANLS--STMTHFYIGGNQILGIIHFGIRNLVNLIALGMQSNQLHGTIPD-VIGELKN 353
H I+ L + +T+ + GNQ+ + + L NL L + NQL ++PD V +L N
Sbjct: 76 HDISALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQ-SLPDGVFDKLTN 134
Query: 354 LQILSLFGNFLHGSIPSSLGNLTKLANLELSSNSLQG 390
L L+L N L LT L L+LS N LQ
Sbjct: 135 LTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQS 171
Score = 33.1 bits (74), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 37/144 (25%), Positives = 58/144 (40%), Gaps = 9/144 (6%)
Query: 256 DFSSLKNLAVL-NLERNNLGIGTANDLGFVTFLTNCSSL--------KLPHSIANLSSTM 306
D S++ + L N+ LG +D+ + LTN + L LP+ + + + +
Sbjct: 52 DIKSVQGIQYLPNVRYLALGGNKLHDISALKELTNLTYLILTGNQLQSLPNGVFDKLTNL 111
Query: 307 THFYIGGNQILGIIHFGIRNLVNLIALGMQSNQLHGTIPDVIGELKNLQILSLFGNFLHG 366
+ NQ+ + L NL L + NQL V +L NL L L N L
Sbjct: 112 KELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQS 171
Query: 367 SIPSSLGNLTKLANLELSSNSLQG 390
LT+L +L L N L+
Sbjct: 172 LPEGVFDKLTQLKDLRLYQNQLKS 195
Score = 32.3 bits (72), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 25/99 (25%), Positives = 38/99 (38%)
Query: 295 LPHSIANLSSTMTHFYIGGNQILGIIHFGIRNLVNLIALGMQSNQLHGTIPDVIGELKNL 354
LP + + + +T+ + NQ+ + L NL L + NQL V +L L
Sbjct: 124 LPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQL 183
Query: 355 QILSLFGNFLHGSIPSSLGNLTKLANLELSSNSLQGNIP 393
+ L L+ N L LT L + L N P
Sbjct: 184 KDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCP 222
Score = 30.0 bits (66), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 41/92 (44%), Gaps = 2/92 (2%)
Query: 85 LYRLEKLELSNNSFSGTIPTNLSRCSELTHLRVANNKLEGQIPKEIGSLLKLQTLALYYN 144
L L L L++N + + LT L ++ N+L+ L +L+ L LY N
Sbjct: 132 LTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQN 191
Query: 145 NLTGQLPDFV-GNLSALQVIYIRGNSLGGKIP 175
L +PD V L++LQ I++ N P
Sbjct: 192 QLKS-VPDGVFDRLTSLQYIWLHDNPWDCTCP 222
Score = 28.9 bits (63), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 37/127 (29%), Positives = 54/127 (42%), Gaps = 10/127 (7%)
Query: 106 LSRCSELTHLRVANNKLEGQIPKEIGSLLKLQTLALYYNNLTGQLPDFV-GNLSALQVIY 164
L + LT+L + N+L+ L L+ L L N L LPD V L+ L +
Sbjct: 81 LKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQS-LPDGVFDKLTNLTYLN 139
Query: 165 IRGNSLGGKIPTTLGLLRNLVYLNVNENQFWYVSSFSGSLPFDILVNLPNLKKLCIAENN 224
+ N L L NL L+++ NQ SLP + L LK L + +N
Sbjct: 140 LAHNQLQSLPKGVFDKLTNLTELDLSYNQL-------QSLPEGVFDKLTQLKDLRLYQNQ 192
Query: 225 FVGSIPD 231
+ S+PD
Sbjct: 193 -LKSVPD 198
>pdb|1W8A|A Chain A, Third Lrr Domain Of Drosophila Slit
Length = 192
Score = 37.4 bits (85), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 28/100 (28%), Positives = 47/100 (47%), Gaps = 7/100 (7%)
Query: 69 LSDNGFHGEIPQEIGNLYRLEKLELSNNSFSGTIPTNLSRCSELTHLRVANNKLEGQIPK 128
+S +G G +P L KLEL N +G P S + L++ NK++ K
Sbjct: 44 ISSDGLFGRLPH-------LVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNK 96
Query: 129 EIGSLLKLQTLALYYNNLTGQLPDFVGNLSALQVIYIRGN 168
L +L+TL LY N ++ +P +L++L + + N
Sbjct: 97 MFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASN 136
>pdb|3CIG|A Chain A, Crystal Structure Of Mouse Tlr3 Ectodomain
pdb|3CIY|A Chain A, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
pdb|3CIY|B Chain B, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
Length = 697
Score = 36.2 bits (82), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 35/123 (28%), Positives = 52/123 (42%)
Query: 287 LTNCSSLKLPHSIANLSSTMTHFYIGGNQILGIIHFGIRNLVNLIALGMQSNQLHGTIPD 346
+ +CS LKL H +L S +T + NQ+ + L L N + P+
Sbjct: 8 VADCSHLKLTHIPDDLPSNITVLNLTHNQLRRLPPTNFTRYSQLAILDAGFNSISKLEPE 67
Query: 347 VIGELKNLQILSLFGNFLHGSIPSSLGNLTKLANLELSSNSLQGNIPLSVGNCQNLIGFD 406
+ L L++L+L N L + T L L+L SNS+ N +NLI D
Sbjct: 68 LCQILPLLKVLNLQHNELSQISDQTFVFCTNLTELDLMSNSIHKIKSNPFKNQKNLIKLD 127
Query: 407 ASH 409
SH
Sbjct: 128 LSH 130
>pdb|2WFH|A Chain A, The Human Slit 2 Dimerization Domain D4
pdb|2WFH|B Chain B, The Human Slit 2 Dimerization Domain D4
Length = 193
Score = 36.2 bits (82), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 30/118 (25%), Positives = 53/118 (44%), Gaps = 7/118 (5%)
Query: 78 IPQEIGNLYRLEKLELSNNSFSGTIPTNLSRCSELTHLRVANNKLEGQIPKEIGSLLKLQ 137
IP+++ LY L N F+ +P LS LT + ++NN++ + ++ +L
Sbjct: 29 IPRDVTELY------LDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLL 81
Query: 138 TLALYYNNLTGQLPDFVGNLSALQVIYIRGNSLGGKIPTTLGLLRNLVYLNVNENQFW 195
TL L YN L P L +L+++ + GN + L L +L + N +
Sbjct: 82 TLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLY 139
Score = 34.3 bits (77), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 24/94 (25%), Positives = 47/94 (50%), Gaps = 1/94 (1%)
Query: 295 LPHSIANLSSTMTHFYIGGNQILGIIHFGIRNLVNLIALGMQSNQLHGTIPDVIGELKNL 354
+P ++N +T + N+I + + N+ L+ L + N+L P LK+L
Sbjct: 46 VPKELSNYKH-LTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSL 104
Query: 355 QILSLFGNFLHGSIPSSLGNLTKLANLELSSNSL 388
++LSL GN + + +L+ L++L + +N L
Sbjct: 105 RLLSLHGNDISVVPEGAFNDLSALSHLAIGANPL 138
Score = 29.6 bits (65), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 38/86 (44%)
Query: 37 HQRVTELDLSNQRIGGVLSPYVGNLSFLRYINLSDNGFHGEIPQEIGNLYRLEKLELSNN 96
++ +T +DLSN RI + + N++ L + LS N P+ L L L L N
Sbjct: 53 YKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGN 112
Query: 97 SFSGTIPTNLSRCSELTHLRVANNKL 122
S + S L+HL + N L
Sbjct: 113 DISVVPEGAFNDLSALSHLAIGANPL 138
>pdb|2Z80|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
pdb|2Z80|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 353
Score = 35.8 bits (81), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 48/164 (29%), Positives = 72/164 (43%), Gaps = 14/164 (8%)
Query: 38 QRVTELDLSNQRIGGVLSPYVGNLSFLRYIN-----LSDNGFHGEIPQEIGNLYRLEKLE 92
+ V LDLSN RI Y+ N R +N L+ NG + +L LE L+
Sbjct: 52 EAVKSLDLSNNRI-----TYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLD 106
Query: 93 LSNNSFSGTIPTNLSRCSELTHLRVANNKLEGQIPKEIGS-LLKLQTLAL-YYNNLTG-Q 149
LS N S + S LT L + N + + S L KLQ L + + T Q
Sbjct: 107 LSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQ 166
Query: 150 LPDFVGNLSALQVIYIRGNSLGGKIPTTLGLLRNLVYLNVNENQ 193
DF G L+ L+ + I + L P +L ++N+ +L ++ Q
Sbjct: 167 RKDFAG-LTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQ 209
>pdb|1ZIW|A Chain A, Human Toll-Like Receptor 3 Extracellular Domain Structure
Length = 680
Score = 35.8 bits (81), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 33/123 (26%), Positives = 53/123 (43%)
Query: 287 LTNCSSLKLPHSIANLSSTMTHFYIGGNQILGIIHFGIRNLVNLIALGMQSNQLHGTIPD 346
+ +CS LKL +L + +T + NQ+ + L +L + N + P+
Sbjct: 8 VADCSHLKLTQVPDDLPTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPE 67
Query: 347 VIGELKNLQILSLFGNFLHGSIPSSLGNLTKLANLELSSNSLQGNIPLSVGNCQNLIGFD 406
+ +L L++L+L N L + T L L L SNS+Q +NLI D
Sbjct: 68 LCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLD 127
Query: 407 ASH 409
SH
Sbjct: 128 LSH 130
>pdb|2V70|A Chain A, Third Lrr Domain Of Human Slit2
pdb|2V70|B Chain B, Third Lrr Domain Of Human Slit2
pdb|2V70|C Chain C, Third Lrr Domain Of Human Slit2
pdb|2V70|D Chain D, Third Lrr Domain Of Human Slit2
Length = 220
Score = 35.4 bits (80), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 39/159 (24%), Positives = 65/159 (40%), Gaps = 12/159 (7%)
Query: 41 TELDLSNQRIGGV---LSPYVGNLSFL--RYINLSDNGFHGEIPQEIGNLYRLEKLELSN 95
T +D SNQ++ + + Y L + L G ++PQ L K+ SN
Sbjct: 14 TTVDCSNQKLNKIPEHIPQYTAELRLNNNEFTVLEATGIFKKLPQ-------LRKINFSN 66
Query: 96 NSFSGTIPTNLSRCSELTHLRVANNKLEGQIPKEIGSLLKLQTLALYYNNLTGQLPDFVG 155
N + S + + + +N+LE K L L+TL L N +T D
Sbjct: 67 NKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFI 126
Query: 156 NLSALQVIYIRGNSLGGKIPTTLGLLRNLVYLNVNENQF 194
LS+++++ + N + P L +L LN+ N F
Sbjct: 127 GLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPF 165
Score = 30.0 bits (66), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 22/93 (23%), Positives = 44/93 (47%)
Query: 303 SSTMTHFYIGGNQILGIIHFGIRNLVNLIALGMQSNQLHGTIPDVIGELKNLQILSLFGN 362
+S + + N++ + H + L +L L ++SN++ D L ++++LSL+ N
Sbjct: 80 ASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDN 139
Query: 363 FLHGSIPSSLGNLTKLANLELSSNSLQGNIPLS 395
+ P + L L+ L L +N N L+
Sbjct: 140 QITTVAPGAFDTLHSLSTLNLLANPFNCNCYLA 172
>pdb|2A0Z|A Chain A, The Molecular Structure Of Toll-like Receptor 3 Ligand
Binding Domain
Length = 705
Score = 35.4 bits (80), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 33/123 (26%), Positives = 53/123 (43%)
Query: 287 LTNCSSLKLPHSIANLSSTMTHFYIGGNQILGIIHFGIRNLVNLIALGMQSNQLHGTIPD 346
+ +CS LKL +L + +T + NQ+ + L +L + N + P+
Sbjct: 13 VADCSHLKLTQVPDDLPTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPE 72
Query: 347 VIGELKNLQILSLFGNFLHGSIPSSLGNLTKLANLELSSNSLQGNIPLSVGNCQNLIGFD 406
+ +L L++L+L N L + T L L L SNS+Q +NLI D
Sbjct: 73 LCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLD 132
Query: 407 ASH 409
SH
Sbjct: 133 LSH 135
>pdb|3ULU|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form1)
pdb|3ULV|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form2)
Length = 694
Score = 35.4 bits (80), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 33/123 (26%), Positives = 53/123 (43%)
Query: 287 LTNCSSLKLPHSIANLSSTMTHFYIGGNQILGIIHFGIRNLVNLIALGMQSNQLHGTIPD 346
+ +CS LKL +L + +T + NQ+ + L +L + N + P+
Sbjct: 18 VADCSHLKLTQVPDDLPTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPE 77
Query: 347 VIGELKNLQILSLFGNFLHGSIPSSLGNLTKLANLELSSNSLQGNIPLSVGNCQNLIGFD 406
+ +L L++L+L N L + T L L L SNS+Q +NLI D
Sbjct: 78 LCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLD 137
Query: 407 ASH 409
SH
Sbjct: 138 LSH 140
>pdb|2R9U|A Chain A, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|B Chain B, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|C Chain C, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|D Chain D, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
Length = 174
Score = 35.0 bits (79), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 31/101 (30%), Positives = 46/101 (45%), Gaps = 2/101 (1%)
Query: 287 LTNCSSLKLPHSIANLSSTMTHFYIGGNQILGIIHFGIRNLVNLIALGMQSNQLHGTIPD 346
L NC +++L A + + ++ NQI + +LVNL L SN+L
Sbjct: 16 LVNCQNIRLASVPAGIPTDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTG 75
Query: 347 VIGELKNLQILSLFGNFLHGSIPS-SLGNLTKLANLELSSN 386
V +L L L L N L SIP + NL L ++ L +N
Sbjct: 76 VFDKLTQLTQLDLNDNHL-KSIPRGAFDNLKSLTHIYLYNN 115
>pdb|2Z64|A Chain A, Crystal Structure Of Mouse Tlr4 And Mouse Md-2 Complex
Length = 599
Score = 34.7 bits (78), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 41/68 (60%), Gaps = 4/68 (5%)
Query: 323 GIRNLVNLIALGMQSNQLHGTIPDVIGELKNLQILSLFGNFLHG-SIPSSLGNLTKLANL 381
G+ +L NL+A+ + L + P IG+L L+ L++ NF+H +P+ NLT L ++
Sbjct: 97 GLTSLENLVAVETKLASLE-SFP--IGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHV 153
Query: 382 ELSSNSLQ 389
+LS N +Q
Sbjct: 154 DLSYNYIQ 161
>pdb|2Z7X|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 549
Score = 34.7 bits (78), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 48/164 (29%), Positives = 72/164 (43%), Gaps = 14/164 (8%)
Query: 38 QRVTELDLSNQRIGGVLSPYVGNLSFLRYIN-----LSDNGFHGEIPQEIGNLYRLEKLE 92
+ V LDLSN RI Y+ N R +N L+ NG + +L LE L+
Sbjct: 26 EAVKSLDLSNNRIT-----YISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLD 80
Query: 93 LSNNSFSGTIPTNLSRCSELTHLRVANNKLEGQIPKEIGS-LLKLQTLAL-YYNNLTG-Q 149
LS N S + S LT L + N + + S L KLQ L + + T Q
Sbjct: 81 LSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQ 140
Query: 150 LPDFVGNLSALQVIYIRGNSLGGKIPTTLGLLRNLVYLNVNENQ 193
DF G L+ L+ + I + L P +L ++N+ +L ++ Q
Sbjct: 141 RKDFAG-LTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQ 183
>pdb|3UL7|A Chain A, Crystal Structure Of The Tv3 Mutant F63w
Length = 278
Score = 34.7 bits (78), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 43/155 (27%), Positives = 71/155 (45%), Gaps = 17/155 (10%)
Query: 58 VGNLSFLRYINLSDNGFHG-EIPQEIGNLYRLEKLELSNNSFSGTIPTNLSRCSELTHLR 116
+G+L L+ +N++ N ++P+ NL LE L+LS+N T+L ++ L
Sbjct: 121 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLN 180
Query: 117 VAN-------NKLEGQIPKEIGSLLKLQTLALYYNNLTGQLPD-FVGNLSALQVIYIRGN 168
++ N ++ KEI +L+ LAL N L +PD L++LQ I++ N
Sbjct: 181 LSLDLSLNPMNFIQPGAFKEI----RLKELALDTNQLKS-VPDGIFDRLTSLQKIWLHTN 235
Query: 169 SLGGKIPTTLGLLRNLVYLNVNENQFWYVSSFSGS 203
P L R +LN N + + SGS
Sbjct: 236 PWDCSCPRIDYLSR---WLNKNSQKEQGSAKCSGS 267
Score = 32.7 bits (73), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 43/141 (30%), Positives = 64/141 (45%), Gaps = 26/141 (18%)
Query: 254 SIDFSSLKNLAVLNLERNNLGIGTANDLGFVTFLTNCSSLKLPHSIANLSSTMTHFYIGG 313
S F S L VL+L R I T D + S+++LS+ + + G
Sbjct: 46 SYSFFSFPELQVLDLSR--CEIQTIEDGAY-------------QSLSHLSTLI----LTG 86
Query: 314 NQI--LGIIHF-GIRNLVNLIALGMQSNQLHGTIPDVIGELKNLQILSLFGNFLHG-SIP 369
N I L + F G+ +L L+A+ L P IG LK L+ L++ N + +P
Sbjct: 87 NPIQSLALGAFSGLSSLQKLVAVETNLASLEN-FP--IGHLKTLKELNVAHNLIQSFKLP 143
Query: 370 SSLGNLTKLANLELSSNSLQG 390
NLT L +L+LSSN +Q
Sbjct: 144 EYFSNLTNLEHLDLSSNKIQS 164
>pdb|3A79|A Chain A, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
pdb|3A7B|A Chain A, Crystal Structure Of Tlr2-Streptococcus Pneumoniae
Lipoteichoic Acid Complex
pdb|3A7C|A Chain A, Crystal Structure Of Tlr2-Pe-Dtpa Complex
Length = 580
Score = 34.7 bits (78), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 32/131 (24%), Positives = 59/131 (45%), Gaps = 2/131 (1%)
Query: 43 LDLSNQRIGGVLSPYVGNLSFLRYINLSDNGFHG-EIPQEIGNLYRLEKLELSN-NSFSG 100
LDLS+ + + S + G LS L+Y+NL N + + NL L+ L + N +FS
Sbjct: 105 LDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSE 164
Query: 101 TIPTNLSRCSELTHLRVANNKLEGQIPKEIGSLLKLQTLALYYNNLTGQLPDFVGNLSAL 160
+ + + L L + L + + S+ + L L+ + L F LS++
Sbjct: 165 IRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSV 224
Query: 161 QVIYIRGNSLG 171
+ + +R +L
Sbjct: 225 RYLELRDTNLA 235
>pdb|3VQ1|A Chain A, Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLEX
pdb|3VQ1|B Chain B, Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLEX
pdb|3VQ2|A Chain A, Crystal Structure Of Mouse Tlr4MD-2LPS COMPLEX
pdb|3VQ2|B Chain B, Crystal Structure Of Mouse Tlr4MD-2LPS COMPLEX
Length = 606
Score = 34.3 bits (77), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 41/68 (60%), Gaps = 4/68 (5%)
Query: 323 GIRNLVNLIALGMQSNQLHGTIPDVIGELKNLQILSLFGNFLHG-SIPSSLGNLTKLANL 381
G+ +L NL+A+ + L + P IG+L L+ L++ NF+H +P+ NLT L ++
Sbjct: 102 GLTSLENLVAVETKLASLE-SFP--IGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHV 158
Query: 382 ELSSNSLQ 389
+LS N +Q
Sbjct: 159 DLSYNYIQ 166
>pdb|3ULA|A Chain A, Crystal Structure Of The Tv3 Mutant F63w-Md-2-Eritoran
Complex
pdb|3ULA|C Chain C, Crystal Structure Of The Tv3 Mutant F63w-Md-2-Eritoran
Complex
Length = 279
Score = 34.3 bits (77), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 43/155 (27%), Positives = 71/155 (45%), Gaps = 17/155 (10%)
Query: 58 VGNLSFLRYINLSDNGFHG-EIPQEIGNLYRLEKLELSNNSFSGTIPTNLSRCSELTHLR 116
+G+L L+ +N++ N ++P+ NL LE L+LS+N T+L ++ L
Sbjct: 122 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLN 181
Query: 117 VAN-------NKLEGQIPKEIGSLLKLQTLALYYNNLTGQLPD-FVGNLSALQVIYIRGN 168
++ N ++ KEI +L+ LAL N L +PD L++LQ I++ N
Sbjct: 182 LSLDLSLNPMNFIQPGAFKEI----RLKELALDTNQLKS-VPDGIFDRLTSLQKIWLHTN 236
Query: 169 SLGGKIPTTLGLLRNLVYLNVNENQFWYVSSFSGS 203
P L R +LN N + + SGS
Sbjct: 237 PWDCSCPRIDYLSR---WLNKNSQKEQGSAKCSGS 268
Score = 32.7 bits (73), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 43/141 (30%), Positives = 64/141 (45%), Gaps = 26/141 (18%)
Query: 254 SIDFSSLKNLAVLNLERNNLGIGTANDLGFVTFLTNCSSLKLPHSIANLSSTMTHFYIGG 313
S F S L VL+L R I T D + S+++LS+ + + G
Sbjct: 47 SYSFFSFPELQVLDLSR--CEIQTIEDGAY-------------QSLSHLSTLI----LTG 87
Query: 314 NQI--LGIIHF-GIRNLVNLIALGMQSNQLHGTIPDVIGELKNLQILSLFGNFLHG-SIP 369
N I L + F G+ +L L+A+ L P IG LK L+ L++ N + +P
Sbjct: 88 NPIQSLALGAFSGLSSLQKLVAVETNLASLEN-FP--IGHLKTLKELNVAHNLIQSFKLP 144
Query: 370 SSLGNLTKLANLELSSNSLQG 390
NLT L +L+LSSN +Q
Sbjct: 145 EYFSNLTNLEHLDLSSNKIQS 165
>pdb|2Z62|A Chain A, Crystal Structure Of The Tv3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z65|A Chain A, Crystal Structure Of The Human Tlr4 Tv3
Hybrid-Md-2-Eritoran Complex
pdb|2Z65|B Chain B, Crystal Structure Of The Human Tlr4 Tv3
Hybrid-Md-2-Eritoran Complex
Length = 276
Score = 34.3 bits (77), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 43/155 (27%), Positives = 71/155 (45%), Gaps = 17/155 (10%)
Query: 58 VGNLSFLRYINLSDNGFHG-EIPQEIGNLYRLEKLELSNNSFSGTIPTNLSRCSELTHLR 116
+G+L L+ +N++ N ++P+ NL LE L+LS+N T+L ++ L
Sbjct: 120 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLN 179
Query: 117 VAN-------NKLEGQIPKEIGSLLKLQTLALYYNNLTGQLPD-FVGNLSALQVIYIRGN 168
++ N ++ KEI +L+ LAL N L +PD L++LQ I++ N
Sbjct: 180 LSLDLSLNPMNFIQPGAFKEI----RLKELALDTNQLKS-VPDGIFDRLTSLQKIWLHTN 234
Query: 169 SLGGKIPTTLGLLRNLVYLNVNENQFWYVSSFSGS 203
P L R +LN N + + SGS
Sbjct: 235 PWDCSCPRIDYLSR---WLNKNSQKEQGSAKCSGS 266
Score = 32.7 bits (73), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 43/141 (30%), Positives = 64/141 (45%), Gaps = 26/141 (18%)
Query: 254 SIDFSSLKNLAVLNLERNNLGIGTANDLGFVTFLTNCSSLKLPHSIANLSSTMTHFYIGG 313
S F S L VL+L R I T D + S+++LS+ + + G
Sbjct: 45 SYSFFSFPELQVLDLSR--CEIQTIEDGAY-------------QSLSHLSTLI----LTG 85
Query: 314 NQI--LGIIHF-GIRNLVNLIALGMQSNQLHGTIPDVIGELKNLQILSLFGNFLHG-SIP 369
N I L + F G+ +L L+A+ L P IG LK L+ L++ N + +P
Sbjct: 86 NPIQSLALGAFSGLSSLQKLVAVETNLASLEN-FP--IGHLKTLKELNVAHNLIQSFKLP 142
Query: 370 SSLGNLTKLANLELSSNSLQG 390
NLT L +L+LSSN +Q
Sbjct: 143 EYFSNLTNLEHLDLSSNKIQS 163
>pdb|2Z81|A Chain A, Crystal Structure Of The Tlr1-tlr2 Heterodimer Induced By
Binding Of A Tri-acylated Lipopeptide
pdb|2Z82|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 549
Score = 34.3 bits (77), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 32/131 (24%), Positives = 59/131 (45%), Gaps = 2/131 (1%)
Query: 43 LDLSNQRIGGVLSPYVGNLSFLRYINLSDNGFHG-EIPQEIGNLYRLEKLELSN-NSFSG 100
LDLS+ + + S + G LS L+Y+NL N + + NL L+ L + N +FS
Sbjct: 79 LDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSE 138
Query: 101 TIPTNLSRCSELTHLRVANNKLEGQIPKEIGSLLKLQTLALYYNNLTGQLPDFVGNLSAL 160
+ + + L L + L + + S+ + L L+ + L F LS++
Sbjct: 139 IRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSV 198
Query: 161 QVIYIRGNSLG 171
+ + +R +L
Sbjct: 199 RYLELRDTNLA 209
>pdb|3UL8|A Chain A, Crystal Structure Of The Tv3 Mutant V134l
Length = 279
Score = 34.3 bits (77), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 43/155 (27%), Positives = 71/155 (45%), Gaps = 17/155 (10%)
Query: 58 VGNLSFLRYINLSDNGFHG-EIPQEIGNLYRLEKLELSNNSFSGTIPTNLSRCSELTHLR 116
+G+L L+ +N++ N ++P+ NL LE L+LS+N T+L ++ L
Sbjct: 122 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLN 181
Query: 117 VAN-------NKLEGQIPKEIGSLLKLQTLALYYNNLTGQLPD-FVGNLSALQVIYIRGN 168
++ N ++ KEI +L+ LAL N L +PD L++LQ I++ N
Sbjct: 182 LSLDLSLNPMNFIQPGAFKEI----RLKELALDTNQLKS-VPDGIFDRLTSLQKIWLHTN 236
Query: 169 SLGGKIPTTLGLLRNLVYLNVNENQFWYVSSFSGS 203
P L R +LN N + + SGS
Sbjct: 237 PWDCSCPRIDYLSR---WLNKNSQKEQGSAKCSGS 268
Score = 33.5 bits (75), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 44/141 (31%), Positives = 64/141 (45%), Gaps = 26/141 (18%)
Query: 254 SIDFSSLKNLAVLNLERNNLGIGTANDLGFVTFLTNCSSLKLPHSIANLSSTMTHFYIGG 313
S F S L VL+L R I T D + S+++LS+ + + G
Sbjct: 47 SYSFFSFPELQVLDLSR--CEIQTIEDGAY-------------QSLSHLSTLI----LTG 87
Query: 314 NQI--LGIIHF-GIRNLVNLIALGMQSNQLHGTIPDVIGELKNLQILSLFGNFLHG-SIP 369
N I L + F G+ +L L+AL L P IG LK L+ L++ N + +P
Sbjct: 88 NPIQSLALGAFSGLSSLQKLVALETNLASLEN-FP--IGHLKTLKELNVAHNLIQSFKLP 144
Query: 370 SSLGNLTKLANLELSSNSLQG 390
NLT L +L+LSSN +Q
Sbjct: 145 EYFSNLTNLEHLDLSSNKIQS 165
>pdb|3UL9|A Chain A, Structure Of The Tv3 Mutant M41e
Length = 278
Score = 34.3 bits (77), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 43/155 (27%), Positives = 71/155 (45%), Gaps = 17/155 (10%)
Query: 58 VGNLSFLRYINLSDNGFHG-EIPQEIGNLYRLEKLELSNNSFSGTIPTNLSRCSELTHLR 116
+G+L L+ +N++ N ++P+ NL LE L+LS+N T+L ++ L
Sbjct: 121 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLN 180
Query: 117 VAN-------NKLEGQIPKEIGSLLKLQTLALYYNNLTGQLPD-FVGNLSALQVIYIRGN 168
++ N ++ KEI +L+ LAL N L +PD L++LQ I++ N
Sbjct: 181 LSLDLSLNPMNFIQPGAFKEI----RLKELALDTNQLKS-VPDGIFDRLTSLQKIWLHTN 235
Query: 169 SLGGKIPTTLGLLRNLVYLNVNENQFWYVSSFSGS 203
P L R +LN N + + SGS
Sbjct: 236 PWDCSCPRIDYLSR---WLNKNSQKEQGSAKCSGS 267
Score = 32.3 bits (72), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 43/141 (30%), Positives = 64/141 (45%), Gaps = 26/141 (18%)
Query: 254 SIDFSSLKNLAVLNLERNNLGIGTANDLGFVTFLTNCSSLKLPHSIANLSSTMTHFYIGG 313
S F S L VL+L R I T D + S+++LS+ + + G
Sbjct: 46 SYSFFSFPELQVLDLSR--CEIQTIEDGAY-------------QSLSHLSTLI----LTG 86
Query: 314 NQI--LGIIHF-GIRNLVNLIALGMQSNQLHGTIPDVIGELKNLQILSLFGNFLHG-SIP 369
N I L + F G+ +L L+A+ L P IG LK L+ L++ N + +P
Sbjct: 87 NPIQSLALGAFSGLSSLQKLVAVETNLASLEN-FP--IGHLKTLKELNVAHNLIQSFKLP 143
Query: 370 SSLGNLTKLANLELSSNSLQG 390
NLT L +L+LSSN +Q
Sbjct: 144 EYFSNLTNLEHLDLSSNKIQS 164
>pdb|4ECO|A Chain A, Crystal Structure Of A Hypothetical Protein (Bacegg_03329)
From Bacteroides Eggerthii Dsm 20697 At 2.70 A
Resolution
pdb|4ECO|B Chain B, Crystal Structure Of A Hypothetical Protein (Bacegg_03329)
From Bacteroides Eggerthii Dsm 20697 At 2.70 A
Resolution
Length = 636
Score = 34.3 bits (77), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 34/61 (55%), Gaps = 1/61 (1%)
Query: 95 NNSFSGTIPTNLSRCSELTHLRVANNKLEGQIPKEIGSLLKLQTLALYYNNLTGQLPDFV 154
NN + + T+L + +L L N+LEG++P GS +KL +L L YN +T +F
Sbjct: 315 NNLKTFPVETSLQKXKKLGXLECLYNQLEGKLPA-FGSEIKLASLNLAYNQITEIPANFC 373
Query: 155 G 155
G
Sbjct: 374 G 374
>pdb|2FT3|A Chain A, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|B Chain B, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|C Chain C, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|D Chain D, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|E Chain E, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|F Chain F, Crystal Structure Of The Biglycan Dimer Core Protein
Length = 332
Score = 33.5 bits (75), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 30/99 (30%), Positives = 43/99 (43%), Gaps = 3/99 (3%)
Query: 64 LRYINLSDNGFHGEIPQEIGNLYRLEKLELSNNSFSGTIPTNLSRCSELTHLRVANNKLE 123
LR + SD G +P+EI L L+L NN S + L L + NNK+
Sbjct: 35 LRVVQCSDLGLKA-VPKEISPDTTL--LDLQNNDISELRKDDFKGLQHLYALVLVNNKIS 91
Query: 124 GQIPKEIGSLLKLQTLALYYNNLTGQLPDFVGNLSALQV 162
K L KLQ L + N+L P+ +L L++
Sbjct: 92 KIHEKAFSPLRKLQKLYISKNHLVEIPPNLPSSLVELRI 130
Score = 30.8 bits (68), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 32/109 (29%), Positives = 55/109 (50%), Gaps = 8/109 (7%)
Query: 64 LRYINLSDNGFHGEIPQEIGNLYRLEKLELSNNSFSGTIPTNLSRCSELTHLRVANNKLE 123
L Y+ +S+ G IP+++ L +L L +N +L R S+L L + +N++
Sbjct: 174 LNYLRISEAKLTG-IPKDLPET--LNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIR 230
Query: 124 GQIPKEIGSLLKLQTLALYY--NNLTGQLPDFVGNLSALQVIYIRGNSL 170
E GSL L TL + NN ++P + +L LQV+Y+ N++
Sbjct: 231 MI---ENGSLSFLPTLRELHLDNNKLSRVPAGLPDLKLLQVVYLHTNNI 276
>pdb|1M10|B Chain B, Crystal Structure Of The Complex Of Glycoprotein Ib Alpha
And The Von Willebrand Factor A1 Domain
Length = 290
Score = 33.5 bits (75), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 41/143 (28%), Positives = 64/143 (44%), Gaps = 16/143 (11%)
Query: 88 LEKLELSNNSFSGTIPTNLSRCSELTHLRVANNKLEGQIPKEIGSLLKLQTLALYYNNLT 147
L++ EL+ GT+P L L +++N+L+ +P +L L L + +N LT
Sbjct: 62 LDRCELTKLQVDGTLPV-------LGTLDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLT 113
Query: 148 GQLPDFVGNLSALQVIYIRGNSLGGKIPTTLGLLRNLVYLNVNENQFWYVSSFSGSLPFD 207
+ L LQ +Y++GN L P L L L++ NQ LP
Sbjct: 114 SLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQL-------TELPAG 166
Query: 208 ILVNLPNLKKLCIAENNFVGSIP 230
+L L NL L + EN+ +IP
Sbjct: 167 LLNGLENLDTLLLQENSLY-TIP 188
>pdb|2O6R|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B61
Length = 177
Score = 33.1 bits (74), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 36/121 (29%), Positives = 53/121 (43%), Gaps = 5/121 (4%)
Query: 84 NLYRLEKLELSNNSFSGTIPTNLSRCSELTHLRVANNKLEGQIPKEIGSLLKLQTLALYY 143
L +L KL LS N + ++LT L + NKL+ L +L+ LAL
Sbjct: 50 KLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELALDT 109
Query: 144 NNLTGQLPDFV-GNLSALQVIYIRGNSLGGKIPTTLGLLRNLVYLNVNENQFWYVSSFSG 202
N L +PD + L++LQ I++ N P L R +LN N + + SG
Sbjct: 110 NQLKS-VPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYLSR---WLNKNSQKEQGSAKCSG 165
Query: 203 S 203
S
Sbjct: 166 S 166
Score = 32.3 bits (72), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 36/131 (27%), Positives = 57/131 (43%), Gaps = 11/131 (8%)
Query: 101 TIPTNLSRCSELTHLRVANNKLEGQIPKEIGSLLKLQTLALYYNNLTGQLPDFV-GNLSA 159
++PT + S T L + +NKL+ L +L L+L N + LPD V L+
Sbjct: 21 SVPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQS-LPDGVFDKLTK 77
Query: 160 LQVIYIRGNSLGGKIPTTLGLLRNLVYLNVNENQFWYVSSFSGSLPFDILVNLPNLKKLC 219
L ++Y+ N L L L L ++ NQ S+P I L +L+K+
Sbjct: 78 LTILYLHENKLQSLPNGVFDKLTQLKELALDTNQL-------KSVPDGIFDRLTSLQKIW 130
Query: 220 IAENNFVGSIP 230
+ N + S P
Sbjct: 131 LHTNPWDCSCP 141
Score = 32.0 bits (71), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 27/100 (27%), Positives = 43/100 (43%), Gaps = 2/100 (2%)
Query: 295 LPHSIANLSSTMTHFYIGGNQILGIIHFGIRNLVNLIALGMQSNQLHGTIPDVIGELKNL 354
LPH + + + +T + NQI + L L L + N+L V +L L
Sbjct: 43 LPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQL 102
Query: 355 QILSLFGNFLHGSIPSSL-GNLTKLANLELSSNSLQGNIP 393
+ L+L N L S+P + LT L + L +N + P
Sbjct: 103 KELALDTNQLK-SVPDGIFDRLTSLQKIWLHTNPWDCSCP 141
>pdb|1U0N|D Chain D, The Ternary Von Willebrand Factor A1-Glycoprotein Ibalpha-
Botrocetin Complex
Length = 265
Score = 33.1 bits (74), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 41/143 (28%), Positives = 64/143 (44%), Gaps = 16/143 (11%)
Query: 88 LEKLELSNNSFSGTIPTNLSRCSELTHLRVANNKLEGQIPKEIGSLLKLQTLALYYNNLT 147
L++ EL+ GT+P L L +++N+L+ +P +L L L + +N LT
Sbjct: 62 LDRCELTKLQVDGTLPV-------LGTLDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLT 113
Query: 148 GQLPDFVGNLSALQVIYIRGNSLGGKIPTTLGLLRNLVYLNVNENQFWYVSSFSGSLPFD 207
+ L LQ +Y++GN L P L L L++ NQ LP
Sbjct: 114 SLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQL-------TELPAG 166
Query: 208 ILVNLPNLKKLCIAENNFVGSIP 230
+L L NL L + EN+ +IP
Sbjct: 167 LLNGLENLDTLLLQENSLY-TIP 188
>pdb|3P72|A Chain A, Structure Of Platelet Glycoprotein 1b Alpha With A Bound
Peptide Inhibitor
Length = 269
Score = 33.1 bits (74), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 41/143 (28%), Positives = 64/143 (44%), Gaps = 16/143 (11%)
Query: 88 LEKLELSNNSFSGTIPTNLSRCSELTHLRVANNKLEGQIPKEIGSLLKLQTLALYYNNLT 147
L++ EL+ GT+P L L +++N+L+ +P +L L L + +N LT
Sbjct: 62 LDRCELTKLQVDGTLPV-------LGTLDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLT 113
Query: 148 GQLPDFVGNLSALQVIYIRGNSLGGKIPTTLGLLRNLVYLNVNENQFWYVSSFSGSLPFD 207
+ L LQ +Y++GN L P L L L++ NQ LP
Sbjct: 114 SLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQL-------TELPAG 166
Query: 208 ILVNLPNLKKLCIAENNFVGSIP 230
+L L NL L + EN+ +IP
Sbjct: 167 LLNGLENLDTLLLQENSLY-TIP 188
>pdb|1M0Z|A Chain A, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
pdb|1M0Z|B Chain B, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
Length = 290
Score = 33.1 bits (74), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 41/143 (28%), Positives = 64/143 (44%), Gaps = 16/143 (11%)
Query: 88 LEKLELSNNSFSGTIPTNLSRCSELTHLRVANNKLEGQIPKEIGSLLKLQTLALYYNNLT 147
L++ EL+ GT+P L L +++N+L+ +P +L L L + +N LT
Sbjct: 62 LDRCELTKLQVDGTLPV-------LGTLDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLT 113
Query: 148 GQLPDFVGNLSALQVIYIRGNSLGGKIPTTLGLLRNLVYLNVNENQFWYVSSFSGSLPFD 207
+ L LQ +Y++GN L P L L L++ NQ LP
Sbjct: 114 SLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQL-------TELPAG 166
Query: 208 ILVNLPNLKKLCIAENNFVGSIP 230
+L L NL L + EN+ +IP
Sbjct: 167 LLNGLENLDTLLLQENSLY-TIP 188
>pdb|2Z7X|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 520
Score = 32.3 bits (72), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 40/166 (24%), Positives = 73/166 (43%), Gaps = 17/166 (10%)
Query: 15 VTSSWNNTINLCQWMGVTCGHRHQRVTELDLSNQRIGGVLSPYVGNLSFLRYINLSDNGF 74
+ ++WN+ I + Q + H V +SN ++ G L + S LS +
Sbjct: 230 IETTWNSFIRILQLVW------HTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQV 283
Query: 75 HGEI---PQEIGNLYRL-EKLELSNNSFSGTIPTNL---SRCSELTHLRVANNKLEGQIP 127
++ PQ +Y + + + N + SGT ++ S+ S HL +NN L +
Sbjct: 284 VSDVFGFPQ--SYIYEIFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVF 341
Query: 128 KEIGSLLKLQTLALYYNNLT--GQLPDFVGNLSALQVIYIRGNSLG 171
+ G L +L+TL L N L ++ + + +LQ + I NS+
Sbjct: 342 ENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVS 387
>pdb|2Z63|A Chain A, Crystal Structure Of The Tv8 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 570
Score = 32.0 bits (71), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 39/145 (26%), Positives = 60/145 (41%), Gaps = 12/145 (8%)
Query: 251 GKVSIDFSSLKNLAVLNLERNNLGIGTANDLGFV-TFLTNCSSLKLPHSIANL---SSTM 306
G S+ + L V+ + N LG+ L F + L S + S+ NL +
Sbjct: 371 GTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISH 430
Query: 307 THFYIGGNQILGIIHFGIRNLVNLIALGMQSNQLHGT-IPDVIGELKNLQILSLFGNFLH 365
TH + N I L +L L M N +PD+ EL+NL L L L
Sbjct: 431 THTRVAFNGIFN-------GLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLE 483
Query: 366 GSIPSSLGNLTKLANLELSSNSLQG 390
P++ +L+ L L ++SN L+
Sbjct: 484 QLSPTAFNSLSSLQVLNMASNQLKS 508
Score = 31.2 bits (69), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 43/141 (30%), Positives = 64/141 (45%), Gaps = 26/141 (18%)
Query: 254 SIDFSSLKNLAVLNLERNNLGIGTANDLGFVTFLTNCSSLKLPHSIANLSSTMTHFYIGG 313
S F S L VL+L R I T D + S+++LS+ + + G
Sbjct: 45 SYSFFSFPELQVLDLSR--CEIQTIEDGAY-------------QSLSHLSTLI----LTG 85
Query: 314 N--QILGIIHF-GIRNLVNLIALGMQSNQLHGTIPDVIGELKNLQILSLFGNFLHG-SIP 369
N Q L + F G+ +L L+A+ L P IG LK L+ L++ N + +P
Sbjct: 86 NPIQSLALGAFSGLSSLQKLVAVETNLASLEN-FP--IGHLKTLKELNVAHNLIQSFKLP 142
Query: 370 SSLGNLTKLANLELSSNSLQG 390
NLT L +L+LSSN +Q
Sbjct: 143 EYFSNLTNLEHLDLSSNKIQS 163
>pdb|4G8A|A Chain A, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
pdb|4G8A|B Chain B, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
Length = 635
Score = 32.0 bits (71), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 44/168 (26%), Positives = 69/168 (41%), Gaps = 16/168 (9%)
Query: 251 GKVSIDFSSLKNLAVLNLERNNLGIGTANDLGFV-TFLTNCSSLKLPHSIANL---SSTM 306
G +S+ + L V+ + N LG+ L F + L S + S+ NL +
Sbjct: 395 GTISLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISH 454
Query: 307 THFYIGGNQILGIIHFGIRN-LVNLIALGMQSNQLHGT-IPDVIGELKNLQILSLFGNFL 364
TH + N GI N L +L L M N +PD+ EL+NL L L L
Sbjct: 455 THTRVAFN--------GIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQL 506
Query: 365 HGSIPSSLGNLTKLANLELSSNSL--QGNIPLSVGNCQNLIGFDASHI 410
P++ +L+ L L +S N+ P N ++ + +HI
Sbjct: 507 EQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHI 554
Score = 31.6 bits (70), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 43/141 (30%), Positives = 64/141 (45%), Gaps = 26/141 (18%)
Query: 254 SIDFSSLKNLAVLNLERNNLGIGTANDLGFVTFLTNCSSLKLPHSIANLSSTMTHFYIGG 313
S F S L VL+L R I T D + S+++LS+ + + G
Sbjct: 69 SYSFFSFPELQVLDLSR--CEIQTIEDGAY-------------QSLSHLSTLI----LTG 109
Query: 314 N--QILGIIHF-GIRNLVNLIALGMQSNQLHGTIPDVIGELKNLQILSLFGNFLHG-SIP 369
N Q L + F G+ +L L+A+ L P IG LK L+ L++ N + +P
Sbjct: 110 NPIQSLALGAFSGLSSLQKLVAVETNLASLEN-FP--IGHLKTLKELNVAHNLIQSFKLP 166
Query: 370 SSLGNLTKLANLELSSNSLQG 390
NLT L +L+LSSN +Q
Sbjct: 167 EYFSNLTNLEHLDLSSNKIQS 187
>pdb|3J0A|A Chain A, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
pdb|3J0A|B Chain B, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
Length = 844
Score = 31.6 bits (70), Expect = 1.00, Method: Compositional matrix adjust.
Identities = 75/329 (22%), Positives = 125/329 (37%), Gaps = 42/329 (12%)
Query: 34 GHRHQRVTELDLSNQRIGGVLSPYVGNLSFLRYINLSDNGFHGEIPQEIGNLYRLEKLEL 93
G V LDLS+ + + S L L+ +NL+ N + + L L+ L L
Sbjct: 262 GLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNL 321
Query: 94 SNNSFSGTIPTNLSRCSELTHLRVANNKLEGQIPKEIGSLLKLQTLALYYNNLTGQLPDF 153
S N +N ++ ++ + N + + L KLQTL L N LT
Sbjct: 322 SYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTT----- 376
Query: 154 VGNLSALQVIYIRGNSLGGKIPTTLGLLRNLVYLNVNENQFWYVSSFSGSLPFDILVNLP 213
+ + ++ I++ GN L +P + L NL++L+ N + + F L+ +P
Sbjct: 377 IHFIPSIPDIFLSGNKL-VTLP-KINLTANLIHLSENRLENLDILYF--------LLRVP 426
Query: 214 NLKKLCIAENNFVGSIPDXXXXXXXXXXXXXXGN-----QFEGKVSID-FSSLKNLAVLN 267
+L+ L + +N F D G +E ++ D F L +L VL
Sbjct: 427 HLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLY 486
Query: 268 LERNNLGIGTANDLGFVTFLTNCSSLKLPHSIANLSSTMTHFYIGGNQILGIIHFGIRNL 327
L N L LP + + + + + N++ + H +
Sbjct: 487 LNHNYLN-------------------SLPPGVFSHLTALRGLSLNSNRLTVLSHNDLP-- 525
Query: 328 VNLIALGMQSNQLHGTIPDVIGELKNLQI 356
NL L + NQL PDV L L I
Sbjct: 526 ANLEILDISRNQLLAPNPDVFVSLSVLDI 554
Score = 28.5 bits (62), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 24/43 (55%)
Query: 346 DVIGELKNLQILSLFGNFLHGSIPSSLGNLTKLANLELSSNSL 388
DV L +LQ+L L N+L+ P +LT L L L+SN L
Sbjct: 474 DVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRL 516
>pdb|2JE0|A Chain A, Crystal Structure Of Pp32
pdb|2JE0|B Chain B, Crystal Structure Of Pp32
pdb|2JE0|C Chain C, Crystal Structure Of Pp32
pdb|2JE0|D Chain D, Crystal Structure Of Pp32
pdb|2JE0|E Chain E, Crystal Structure Of Pp32
pdb|2JE0|F Chain F, Crystal Structure Of Pp32
pdb|2JE1|A Chain A, The Crystal Structure Of The Tumor Supressor Protein Pp32
( Anp32a):structural Insights Into The Anp32 Family Of
Proteins
pdb|2JE1|B Chain B, The Crystal Structure Of The Tumor Supressor Protein Pp32
( Anp32a):structural Insights Into The Anp32 Family Of
Proteins
pdb|2JE1|C Chain C, The Crystal Structure Of The Tumor Supressor Protein Pp32
( Anp32a):structural Insights Into The Anp32 Family Of
Proteins
pdb|2JE1|D Chain D, The Crystal Structure Of The Tumor Supressor Protein Pp32
( Anp32a):structural Insights Into The Anp32 Family Of
Proteins
Length = 149
Score = 31.6 bits (70), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 42/79 (53%), Gaps = 4/79 (5%)
Query: 92 ELSNNSFSGTIPTNLSRCSELTHLRVANNKLEGQIPKE-IGSLLKLQTLALYYNNLTGQL 150
ELS+N SG + +C LTHL ++ NK++ E + L L++L L+ +T L
Sbjct: 70 ELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTN-L 128
Query: 151 PDFVGNLSAL--QVIYIRG 167
D+ N+ L Q+ Y+ G
Sbjct: 129 NDYRENVFKLLPQLTYLDG 147
>pdb|2ID5|A Chain A, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|B Chain B, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|C Chain C, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|D Chain D, Crystal Structure Of The Lingo-1 Ectodomain
Length = 477
Score = 31.6 bits (70), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 33/111 (29%), Positives = 48/111 (43%)
Query: 84 NLYRLEKLELSNNSFSGTIPTNLSRCSELTHLRVANNKLEGQIPKEIGSLLKLQTLALYY 143
LYRL+ LE+S+ + T+ N LT L + + L + L+ L+ L L Y
Sbjct: 198 RLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSY 257
Query: 144 NNLTGQLPDFVGNLSALQVIYIRGNSLGGKIPTTLGLLRNLVYLNVNENQF 194
N ++ + L LQ I + G L P L L LNV+ NQ
Sbjct: 258 NPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQL 308
Score = 28.9 bits (63), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 86/352 (24%), Positives = 130/352 (36%), Gaps = 73/352 (20%)
Query: 65 RYINLSDNGFHGEIPQEIGNLYRLEKLELSNNSFSGTIPTNLSRCSELTHLRVANNKLEG 124
R ++L N E + LE+LEL+ N S P + L L + +N+
Sbjct: 35 RLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNR--- 91
Query: 125 QIPKEIGSLLKLQTLALYYNNLTGQLPDFVGNLSALQVIYIRGNSLGGKIPTTLGLLRNL 184
LKL L ++ TG LS L + I N + + L NL
Sbjct: 92 ---------LKLIPLGVF----TG--------LSNLTKLDISENKIVILLDYMFQDLYNL 130
Query: 185 VYLNVNENQFWYVS--SFSGSLPFDILVNLPNLKKLCIAENNFVGSIPDXXXXXXXXXXX 242
L V +N Y+S +FSG L +L++L + + N SIP
Sbjct: 131 KSLEVGDNDLVYISHRAFSG---------LNSLEQLTLEKCNLT-SIPTEA--------- 171
Query: 243 XXXGNQFEGKVSIDFSSLKNLAVLNLERNNLGIGTANDLGFVTFLTNCSSLKLPHSIANL 302
S L L VL L +L I D F L L++ H
Sbjct: 172 --------------LSHLHGLIVLRLR--HLNINAIRDYSFKR-LYRLKVLEISHWPYLD 214
Query: 303 SST--------MTHFYIGGNQILGIIHFGIRNLVNLIALGMQSNQLHGTIPDVIGELKNL 354
+ T +T I + + + +R+LV L L + N + ++ EL L
Sbjct: 215 TMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRL 274
Query: 355 QILSLFGNFLHGSIPSSLGNLTKLANLELSSN---SLQGNIPLSVGNCQNLI 403
Q + L G L P + L L L +S N +L+ ++ SVGN + LI
Sbjct: 275 QEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLI 326
>pdb|3FXI|A Chain A, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
pdb|3FXI|B Chain B, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
Length = 605
Score = 31.2 bits (69), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 43/141 (30%), Positives = 64/141 (45%), Gaps = 26/141 (18%)
Query: 254 SIDFSSLKNLAVLNLERNNLGIGTANDLGFVTFLTNCSSLKLPHSIANLSSTMTHFYIGG 313
S F S L VL+L R I T D + S+++LS+ + + G
Sbjct: 45 SYSFFSFPELQVLDLSR--CEIQTIEDGAY-------------QSLSHLSTLI----LTG 85
Query: 314 N--QILGIIHF-GIRNLVNLIALGMQSNQLHGTIPDVIGELKNLQILSLFGNFLHG-SIP 369
N Q L + F G+ +L L+A+ L P IG LK L+ L++ N + +P
Sbjct: 86 NPIQSLALGAFSGLSSLQKLVAVETNLASLEN-FP--IGHLKTLKELNVAHNLIQSFKLP 142
Query: 370 SSLGNLTKLANLELSSNSLQG 390
NLT L +L+LSSN +Q
Sbjct: 143 EYFSNLTNLEHLDLSSNKIQS 163
Score = 30.4 bits (67), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 44/168 (26%), Positives = 68/168 (40%), Gaps = 16/168 (9%)
Query: 251 GKVSIDFSSLKNLAVLNLERNNLGIGTANDLGFV-TFLTNCSSLKLPHSIANL---SSTM 306
G S+ + L V+ + N LG+ L F + L S + S+ NL +
Sbjct: 371 GTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISH 430
Query: 307 THFYIGGNQILGIIHFGIRN-LVNLIALGMQSNQLHGT-IPDVIGELKNLQILSLFGNFL 364
TH + N GI N L +L L M N +PD+ EL+NL L L L
Sbjct: 431 THTRVAFN--------GIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQL 482
Query: 365 HGSIPSSLGNLTKLANLELSSNSL--QGNIPLSVGNCQNLIGFDASHI 410
P++ +L+ L L +S N+ P N ++ + +HI
Sbjct: 483 EQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHI 530
>pdb|1SQ0|B Chain B, Crystal Structure Of The Complex Of The Wild-Type Von
Willebrand Factor A1 Domain And Glycoprotein Ib Alpha At
2.6 Angstrom Resolution
Length = 288
Score = 31.2 bits (69), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 40/143 (27%), Positives = 63/143 (44%), Gaps = 16/143 (11%)
Query: 88 LEKLELSNNSFSGTIPTNLSRCSELTHLRVANNKLEGQIPKEIGSLLKLQTLALYYNNLT 147
L++ EL+ GT+P L L +++N+L+ +P +L L L + +N LT
Sbjct: 62 LDRCELTKLQVDGTLPV-------LGTLDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLT 113
Query: 148 GQLPDFVGNLSALQVIYIRGNSLGGKIPTTLGLLRNLVYLNVNENQFWYVSSFSGSLPFD 207
+ L LQ +Y++GN L P L L L++ N LP
Sbjct: 114 SLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNDL-------TELPAG 166
Query: 208 ILVNLPNLKKLCIAENNFVGSIP 230
+L L NL L + EN+ +IP
Sbjct: 167 LLNGLENLDTLLLQENSLY-TIP 188
>pdb|1G9U|A Chain A, Crystal Structure Of Yopm-leucine Rich Effector Protein
From Yersinia Pestis
pdb|1JL5|A Chain A, Novel Molecular Architecture Of Yopm-A Leucine-Rich
Effector Protein From Yersinia Pestis
Length = 454
Score = 31.2 bits (69), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 52/166 (31%), Positives = 77/166 (46%), Gaps = 30/166 (18%)
Query: 56 PYVGNLSFLRYINLSDNGFHG--EIPQEI-----GNLYRLEKL-ELSNNSFSGTIPTNLS 107
P + N SFL+ I++ +N ++P + GN +LE+L EL N F I + +
Sbjct: 147 PELQNSSFLKIIDVDNNSLKKLPDLPPSLEFIAAGN-NQLEELPELQNLPFLTAIYADNN 205
Query: 108 RCSELTHLRVA-------NNKLEGQIPKEIGSLLKLQTLALYY--NNLTGQLPDFVGNLS 158
+L L ++ NN LE E+ L L L Y NNL LPD +L
Sbjct: 206 SLKKLPDLPLSLESIVAGNNILE-----ELPELQNLPFLTTIYADNNLLKTLPDLPPSLE 260
Query: 159 ALQVIYIRGNSLGGKIPTTLGLLRNLVYLNVNENQFWYVSSFSGSL 204
AL V R N L +P L ++L +L+V+EN F +S +L
Sbjct: 261 ALNV---RDNYLTD-LPE---LPQSLTFLDVSENIFSGLSELPPNL 299
>pdb|1P8V|A Chain A, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Alpha-thrombin At 2.6a
Length = 279
Score = 30.8 bits (68), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 40/143 (27%), Positives = 63/143 (44%), Gaps = 16/143 (11%)
Query: 88 LEKLELSNNSFSGTIPTNLSRCSELTHLRVANNKLEGQIPKEIGSLLKLQTLALYYNNLT 147
L++ EL+ GT+P L L +++N+L+ +P +L L L + +N LT
Sbjct: 62 LDRCELTKLQVDGTLPV-------LGTLDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLT 113
Query: 148 GQLPDFVGNLSALQVIYIRGNSLGGKIPTTLGLLRNLVYLNVNENQFWYVSSFSGSLPFD 207
+ L LQ +Y++GN L P L L L++ N LP
Sbjct: 114 SLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNL-------TELPAG 166
Query: 208 ILVNLPNLKKLCIAENNFVGSIP 230
+L L NL L + EN+ +IP
Sbjct: 167 LLNGLENLDTLLLQENSLY-TIP 188
>pdb|3ZYO|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
And Immunoglobulin Domain Of Netrin-G Ligand-3
Length = 411
Score = 30.8 bits (68), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 32/117 (27%), Positives = 50/117 (42%), Gaps = 7/117 (5%)
Query: 57 YVGNLSF-----LRYINLSDNGFHGEIPQEIGNLYRLEKLELSNNSFSGTIPTNLSRCSE 111
Y+ +F LRY+NL +IP + L RLE+LELS N P + +
Sbjct: 146 YISEAAFEGLVNLRYLNLGMCNL-KDIPN-LTALVRLEELELSGNRLDLIRPGSFQGLTS 203
Query: 112 LTHLRVANNKLEGQIPKEIGSLLKLQTLALYYNNLTGQLPDFVGNLSALQVIYIRGN 168
L L + + ++ L L+ L L +NNL D L L+ +++ N
Sbjct: 204 LRKLWLMHAQVATIERNAFDDLKSLEELNLSHNNLMSLPHDLFTPLHRLERVHLNHN 260
>pdb|3ZYN|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
pdb|3ZYN|B Chain B, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
Length = 321
Score = 30.8 bits (68), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 32/117 (27%), Positives = 50/117 (42%), Gaps = 7/117 (5%)
Query: 57 YVGNLSF-----LRYINLSDNGFHGEIPQEIGNLYRLEKLELSNNSFSGTIPTNLSRCSE 111
Y+ +F LRY+NL +IP + L RLE+LELS N P + +
Sbjct: 146 YISEAAFEGLVNLRYLNLGMCNL-KDIPN-LTALVRLEELELSGNRLDLIRPGSFQGLTS 203
Query: 112 LTHLRVANNKLEGQIPKEIGSLLKLQTLALYYNNLTGQLPDFVGNLSALQVIYIRGN 168
L L + + ++ L L+ L L +NNL D L L+ +++ N
Sbjct: 204 LRKLWLMHAQVATIERNAFDDLKSLEELNLSHNNLMSLPHDLFTPLHRLERVHLNHN 260
>pdb|1GWB|B Chain B, Structure Of Glycoprotein 1b
pdb|1GWB|A Chain A, Structure Of Glycoprotein 1b
Length = 281
Score = 30.8 bits (68), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 40/143 (27%), Positives = 63/143 (44%), Gaps = 16/143 (11%)
Query: 88 LEKLELSNNSFSGTIPTNLSRCSELTHLRVANNKLEGQIPKEIGSLLKLQTLALYYNNLT 147
L++ EL+ GT+P L L +++N+L+ +P +L L L + +N LT
Sbjct: 63 LDRCELTKLQVDGTLPV-------LGTLDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLT 114
Query: 148 GQLPDFVGNLSALQVIYIRGNSLGGKIPTTLGLLRNLVYLNVNENQFWYVSSFSGSLPFD 207
+ L LQ +Y++GN L P L L L++ N LP
Sbjct: 115 SLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNL-------TELPAG 167
Query: 208 ILVNLPNLKKLCIAENNFVGSIP 230
+L L NL L + EN+ +IP
Sbjct: 168 LLNGLENLDTLLLQENSLY-TIP 189
>pdb|3PMH|G Chain G, Mechanism Of Sulfotyrosine-Mediated Glycoprotein Ib
Interaction With Two Distinct Alpha-Thrombin Sites
Length = 290
Score = 30.8 bits (68), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 40/143 (27%), Positives = 63/143 (44%), Gaps = 16/143 (11%)
Query: 88 LEKLELSNNSFSGTIPTNLSRCSELTHLRVANNKLEGQIPKEIGSLLKLQTLALYYNNLT 147
L++ EL+ GT+P L L +++N+L+ +P +L L L + +N LT
Sbjct: 62 LDRAELTKLQVDGTLPV-------LGTLDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLT 113
Query: 148 GQLPDFVGNLSALQVIYIRGNSLGGKIPTTLGLLRNLVYLNVNENQFWYVSSFSGSLPFD 207
+ L LQ +Y++GN L P L L L++ N LP
Sbjct: 114 SLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNL-------TELPAG 166
Query: 208 ILVNLPNLKKLCIAENNFVGSIP 230
+L L NL L + EN+ +IP
Sbjct: 167 LLNGLENLDTLLLQENSLY-TIP 188
Score = 28.5 bits (62), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 36/134 (26%), Positives = 58/134 (43%), Gaps = 3/134 (2%)
Query: 37 HQRVTELDLSNQRIGGVLSPYVGNLSFLRYINLSDNGFHGEIPQEIGNLYRLEKLELSNN 96
+ R+T+L+L + + G L L ++LS N +P L L L++S N
Sbjct: 54 YTRLTQLNLDRAELTKLQ--VDGTLPVLGTLDLSHNQLQS-LPLLGQTLPALTVLDVSFN 110
Query: 97 SFSGTIPTNLSRCSELTHLRVANNKLEGQIPKEIGSLLKLQTLALYYNNLTGQLPDFVGN 156
+ L EL L + N+L+ P + KL+ L+L NNLT +
Sbjct: 111 RLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNG 170
Query: 157 LSALQVIYIRGNSL 170
L L + ++ NSL
Sbjct: 171 LENLDTLLLQENSL 184
>pdb|1P9A|G Chain G, Crystal Structure Of N-terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-alpha At 1.7 Angstrom
Resolution
pdb|1QYY|A Chain A, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
pdb|1QYY|G Chain G, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
Length = 290
Score = 30.8 bits (68), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 40/143 (27%), Positives = 63/143 (44%), Gaps = 16/143 (11%)
Query: 88 LEKLELSNNSFSGTIPTNLSRCSELTHLRVANNKLEGQIPKEIGSLLKLQTLALYYNNLT 147
L++ EL+ GT+P L L +++N+L+ +P +L L L + +N LT
Sbjct: 62 LDRAELTKLQVDGTLPV-------LGTLDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLT 113
Query: 148 GQLPDFVGNLSALQVIYIRGNSLGGKIPTTLGLLRNLVYLNVNENQFWYVSSFSGSLPFD 207
+ L LQ +Y++GN L P L L L++ N LP
Sbjct: 114 SLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNL-------TELPAG 166
Query: 208 ILVNLPNLKKLCIAENNFVGSIP 230
+L L NL L + EN+ +IP
Sbjct: 167 LLNGLENLDTLLLQENSLY-TIP 188
>pdb|1OOK|G Chain G, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Human Alpha-thrombin
Length = 290
Score = 30.8 bits (68), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 40/143 (27%), Positives = 63/143 (44%), Gaps = 16/143 (11%)
Query: 88 LEKLELSNNSFSGTIPTNLSRCSELTHLRVANNKLEGQIPKEIGSLLKLQTLALYYNNLT 147
L++ EL+ GT+P L L +++N+L+ +P +L L L + +N LT
Sbjct: 62 LDRAELTKLQVDGTLPV-------LGTLDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLT 113
Query: 148 GQLPDFVGNLSALQVIYIRGNSLGGKIPTTLGLLRNLVYLNVNENQFWYVSSFSGSLPFD 207
+ L LQ +Y++GN L P L L L++ N LP
Sbjct: 114 SLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNL-------TELPAG 166
Query: 208 ILVNLPNLKKLCIAENNFVGSIP 230
+L L NL L + EN+ +IP
Sbjct: 167 LLNGLENLDTLLLQENSLY-TIP 188
>pdb|2Z66|A Chain A, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|B Chain B, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|C Chain C, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|D Chain D, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 306
Score = 30.4 bits (67), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 64/257 (24%), Positives = 97/257 (37%), Gaps = 44/257 (17%)
Query: 165 IRGNSLG-GKIPTTLGLLRNLVYLNVNENQFWYVSSFSGSLPFDILVNLPNLKKLCIAEN 223
IR NS G +PT G+ + L + N+ SLP + L L KL ++ N
Sbjct: 12 IRCNSKGLTSVPT--GIPSSATRLELESNKLQ-------SLPHGVFDKLTQLTKLSLSSN 62
Query: 224 --NFVGSIPDXXXXXXXXXXXXXXGNQFEGKVSIDFSSLKNLAVLNLERNNLGIGTANDL 281
+F G G S+ + L V+ + N LG+ L
Sbjct: 63 GLSFKGCCSQSDF----------------GTTSLKYLDLSFNGVITMSSNFLGLEQLEHL 106
Query: 282 GFV-TFLTNCSSLKLPHSIANL---SSTMTHFYIGGNQILGIIHFGIRN-LVNLIALGMQ 336
F + L S + S+ NL + TH + N GI N L +L L M
Sbjct: 107 DFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFN--------GIFNGLSSLEVLKMA 158
Query: 337 SNQLHGT-IPDVIGELKNLQILSLFGNFLHGSIPSSLGNLTKLANLELSSNSL--QGNIP 393
N +PD+ EL+NL L L L P++ +L+ L L +S N+ P
Sbjct: 159 GNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFP 218
Query: 394 LSVGNCQNLIGFDASHI 410
N ++ + +HI
Sbjct: 219 YKCLNSLQVLDYSLNHI 235
>pdb|1XEU|A Chain A, Crystal Structure Of Internalin C From Listeria
Monocytogenes
Length = 263
Score = 30.4 bits (67), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 47/146 (32%), Positives = 72/146 (49%), Gaps = 18/146 (12%)
Query: 251 GKVSI-DFSSLKNLA-VLNLERNNLGIGTANDLGFVTFLTNCSSLKLPHS-IANLS---- 303
GK S+ D S K L+ V N +N I + L + F TN L L H+ I++LS
Sbjct: 27 GKQSVTDLVSQKELSGVQNFNGDNSNIQS---LAGMQFFTNLKELHLSHNQISDLSPLKD 83
Query: 304 -STMTHFYIGGNQILGIIHFGIRNLVNLIALGMQSNQLHGTIPDVIGELKNLQILSLFGN 362
+ + + N++ + GI + L L + +N+L T D + LKNL+ILS+ N
Sbjct: 84 LTKLEELSVNRNRLKNL--NGIPSAC-LSRLFLDNNELRDT--DSLIHLKNLEILSIRNN 138
Query: 363 FLHGSIPSSLGNLTKLANLELSSNSL 388
L + LG L+KL L+L N +
Sbjct: 139 KLKSIV--MLGFLSKLEVLDLHGNEI 162
>pdb|3B2D|A Chain A, Crystal Structure Of Human Rp105MD-1 Complex
pdb|3B2D|B Chain B, Crystal Structure Of Human Rp105MD-1 Complex
Length = 603
Score = 30.4 bits (67), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 37/135 (27%), Positives = 59/135 (43%), Gaps = 8/135 (5%)
Query: 40 VTELDLSNQRIGGVLSPYVGNLSFLRYINLSDNGFHGEIPQEIGNLYRLEKLELSNNSFS 99
V L+L R + S + L+ ++L+ G +P + L L+KL LS N F
Sbjct: 253 VESLNLQEHRFSDISSTTFQCFTQLQELDLTATHLKG-LPSGMKGLNLLKKLVLSVNHFD 311
Query: 100 GTIPTNLSRCSELTHLRVANNKLEGQIPKEIGSLLK---LQTLALYYNNLTGQ--LPDFV 154
+ + LTHL + N ++ +G L K LQTL L +N++ +
Sbjct: 312 QLCQISAANFPSLTHLYIRGNV--KKLHLGVGCLEKLGNLQTLDLSHNDIEASDCCSLQL 369
Query: 155 GNLSALQVIYIRGNS 169
NLS LQ + + N
Sbjct: 370 KNLSHLQTLNLSHNE 384
Score = 28.5 bits (62), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 43/164 (26%), Positives = 64/164 (39%), Gaps = 27/164 (16%)
Query: 29 MGVTCGHRHQRVTELDLSNQRIGG--VLSPYVGNLSFLRYINLSDNGFHGEIPQEIGNLY 86
+GV C + + LDLS+ I S + NLS L+ +NLS N
Sbjct: 338 LGVGCLEKLGNLQTLDLSHNDIEASDCCSLQLKNLSHLQTLNLSHN-------------- 383
Query: 87 RLEKLELSNNSFSGTIPTNLSRCSELTHLRVANNKLEGQIPKE-IGSLLKLQTLALYYNN 145
E L L + +F C +L L +A +L P+ +L LQ L L Y
Sbjct: 384 --EPLGLQSQAF--------KECPQLELLDLAFTRLHINAPQSPFQNLHFLQVLNLTYCF 433
Query: 146 LTGQLPDFVGNLSALQVIYIRGNSLGGKIPTTLGLLRNLVYLNV 189
L + L L+ + ++GN T LL+ + L V
Sbjct: 434 LDTSNQHLLAGLPVLRHLNLKGNHFQDGTITKTNLLQTVGSLEV 477
>pdb|3E6J|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor (Vlr)
Rbc36 In Complex With H-Trisaccharide
Length = 229
Score = 30.0 bits (66), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 41/156 (26%), Positives = 64/156 (41%), Gaps = 16/156 (10%)
Query: 76 GEIPQEI-GNLYRLEKLELSNNSFSGTIPTNLSRCSELTHLRVANNKLEGQIPKEIGSLL 134
G +P + +L +L L+L N + R L L + NKL ++P+ I L
Sbjct: 77 GALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLT 135
Query: 135 KLQTLALYYNNLTGQLPDFVGNLSALQVIYIRGNSLGGKIPTTLGLLRNLVYLNVNENQF 194
L LAL N L LS+L Y+ GN + R+++YL +
Sbjct: 136 HLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDCEC-------RDIMYL-----RN 183
Query: 195 WYVSSFSGSLPFD-ILVNLPNLKKLCIAENNFVGSI 229
W S ++ +D VN P+ K C N V ++
Sbjct: 184 WVADHTSIAMRWDGKAVNDPDSAK-CAGTNTPVRAV 218
Score = 29.6 bits (65), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 33/112 (29%), Positives = 50/112 (44%), Gaps = 8/112 (7%)
Query: 257 FSSLKNLAVLNLERNNLG---IGTANDLGFVTFL---TNCSSLKLPHSIANLSSTMTHFY 310
F SL NL L L N LG +G + L +T L TN ++ LP ++ + + +
Sbjct: 60 FDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTV-LPSAVFDRLVHLKELF 118
Query: 311 IGGNQILGIIHFGIRNLVNLIALGMQSNQLHGTIPDVIGELKNLQILSLFGN 362
+ N++ + GI L +L L + NQL L +L LFGN
Sbjct: 119 MCCNKLTELPR-GIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGN 169
Score = 28.5 bits (62), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 31/113 (27%), Positives = 45/113 (39%), Gaps = 6/113 (5%)
Query: 107 SRCSELTHLRVANNKLEGQIPKEIGSLLKLQTLALYYNNLTGQLPDFVGNLSALQVIYIR 166
S+CS +K +P I + Q L L+ N +T P +L L+ +Y+
Sbjct: 15 SQCSCSGTTVDCRSKRHASVPAGIPT--NAQILYLHDNQITKLEPGVFDSLINLKELYLG 72
Query: 167 GNSLGGKIPTTLGLLRNLVYLNVNENQFWYVSSFSGSLPFDILVNLPNLKKLC 219
N LG L L L++ NQ + S FD LV+L L C
Sbjct: 73 SNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAV----FDRLVHLKELFMCC 121
>pdb|2V9S|A Chain A, Second Lrr Domain Of Human Slit2
pdb|2V9S|B Chain B, Second Lrr Domain Of Human Slit2
pdb|2V9S|C Chain C, Second Lrr Domain Of Human Slit2
pdb|2V9S|D Chain D, Second Lrr Domain Of Human Slit2
Length = 220
Score = 29.6 bits (65), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 23/86 (26%), Positives = 36/86 (41%), Gaps = 1/86 (1%)
Query: 287 LTNCSSLKLPHSIANLSSTMTHFYIGGNQILGIIHFGIRNLVNLIALGMQSNQLHGTIPD 346
+ +C L NL T+T + N I I L + + +NQ+ PD
Sbjct: 15 IVDCRGKGLTEIPTNLPETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPD 74
Query: 347 VIGELKNLQILSLFGNFLHGSIPSSL 372
L++L L L+GN + +P SL
Sbjct: 75 AFQGLRSLNSLVLYGNKI-TELPKSL 99
Score = 28.5 bits (62), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 46/166 (27%), Positives = 67/166 (40%), Gaps = 14/166 (8%)
Query: 10 HDPSGVTSSWNNTINLCQWMGVT--CGHRHQRVTELDLSNQRIG----GVLSPYVGNLSF 63
H P+ T S NN ++ C+ G+T + + +TE+ L I G SPY
Sbjct: 4 HCPAACTCS-NNIVD-CRGKGLTEIPTNLPETITEIRLEQNTIKVIPPGAFSPYKK---- 57
Query: 64 LRYINLSDNGFHGEIPQEIGNLYRLEKLELSNNSFSGTIPTNLSRCSELTHLRVAN-NKL 122
LR I+LS+N P L L L L N + +P +L L + N NK+
Sbjct: 58 LRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKIT-ELPKSLFEGLFSLQLLLLNANKI 116
Query: 123 EGQIPKEIGSLLKLQTLALYYNNLTGQLPDFVGNLSALQVIYIRGN 168
L L L+LY N L L A+Q +++ N
Sbjct: 117 NXLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQN 162
>pdb|2V9T|B Chain B, Complex Between The Second Lrr Domain Of Slit2 And The
First Ig Domain From Robo1
Length = 220
Score = 29.6 bits (65), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 23/86 (26%), Positives = 36/86 (41%), Gaps = 1/86 (1%)
Query: 287 LTNCSSLKLPHSIANLSSTMTHFYIGGNQILGIIHFGIRNLVNLIALGMQSNQLHGTIPD 346
+ +C L NL T+T + N I I L + + +NQ+ PD
Sbjct: 15 IVDCRGKGLTEIPTNLPETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPD 74
Query: 347 VIGELKNLQILSLFGNFLHGSIPSSL 372
L++L L L+GN + +P SL
Sbjct: 75 AFQGLRSLNSLVLYGNKI-TELPKSL 99
>pdb|3IQ0|A Chain A, Crystal Structure Of A Putative Ribokinase Ii In Complex
With Atp And Mg+2 From E.Coli
pdb|3IQ0|B Chain B, Crystal Structure Of A Putative Ribokinase Ii In Complex
With Atp And Mg+2 From E.Coli
pdb|3K9E|A Chain A, Crystal Structure Of A Putative Ribokinase Ii (Apo Form)
From E.Coli
pdb|3K9E|B Chain B, Crystal Structure Of A Putative Ribokinase Ii (Apo Form)
From E.Coli
Length = 330
Score = 29.3 bits (64), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 18/71 (25%), Positives = 32/71 (45%), Gaps = 5/71 (7%)
Query: 252 KVSIDFSSLKNLAVLNLERNNLGIGTANDLGFVTFLTN-----CSSLKLPHSIANLSSTM 306
+++ D ++ ++VL LE T ++ G F+ N C L H N+
Sbjct: 72 RLAADGVDIRGISVLPLEATGSAFVTYHNSGDRDFIFNIKNAACGKLSAQHVDENILKDC 131
Query: 307 THFYIGGNQIL 317
THF+I G+ +
Sbjct: 132 THFHIXGSSLF 142
>pdb|3T6Q|A Chain A, Crystal Structure Of Mouse Rp105MD-1 Complex
pdb|3T6Q|B Chain B, Crystal Structure Of Mouse Rp105MD-1 Complex
Length = 606
Score = 28.9 bits (63), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 27/110 (24%), Positives = 44/110 (40%), Gaps = 22/110 (20%)
Query: 28 WMGVTCGHRHQRVTELDLSNQRIGGVLSPYVGNLSFLR--YINLSDNGFH---------- 75
W+G + + + D+S G+ V +++ + + N+S N FH
Sbjct: 231 WLGT-----FEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDL 285
Query: 76 -----GEIPQEIGNLYRLEKLELSNNSFSGTIPTNLSRCSELTHLRVANN 120
E+P + L L+KL LS N F + S LTHL + N
Sbjct: 286 TATHLSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGN 335
>pdb|3ZYI|A Chain A, Netring2 In Complex With Ngl2
Length = 452
Score = 28.9 bits (63), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 35/135 (25%), Positives = 54/135 (40%), Gaps = 18/135 (13%)
Query: 49 RIGGVLSPYVGNLSFLRYINLSDNGFHG---------------EIPQEIGNLYRLEKLEL 93
R+ ++ +G L L YI S+ F G ++P + L LE+LE+
Sbjct: 169 RVPSLMRLDLGELKKLEYI--SEGAFEGLFNLKYLNLGMCNIKDMPN-LTPLVGLEELEM 225
Query: 94 SNNSFSGTIPTNLSRCSELTHLRVANNKLEGQIPKEIGSLLKLQTLALYYNNLTGQLPDF 153
S N F P + S L L V N+++ L L L L +NNL+ D
Sbjct: 226 SGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDL 285
Query: 154 VGNLSALQVIYIRGN 168
L L +++ N
Sbjct: 286 FTPLRYLVELHLHHN 300
>pdb|1XCD|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 1
pdb|1XEC|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
pdb|1XEC|B Chain B, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
Length = 329
Score = 28.9 bits (63), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 39/141 (27%), Positives = 58/141 (41%), Gaps = 32/141 (22%)
Query: 64 LRYINLSDNGFHGEIPQEIGNLYRLEKLELSNNSFSGTIPTNLSRCSELTHLRVANNKLE 123
LR + SD G ++P+++ L L+L NN + + L L + NNK+
Sbjct: 33 LRVVQCSDLGLE-KVPKDLPPDTAL--LDLQNNKITEIKDGDFKNLKNLHTLILINNKIS 89
Query: 124 GQIPKEIGSLLKLQTLALYYNNLTGQLPDFVGNLSALQVIYIRGNSLGGKIPTTLGLLRN 183
P L+KL+ L L N L +LP+ K+P TL LR
Sbjct: 90 KISPGAFAPLVKLERLYLSKNQLK-ELPE--------------------KMPKTLQELR- 127
Query: 184 LVYLNVNENQFWYV--SSFSG 202
V+EN+ V S F+G
Sbjct: 128 -----VHENEITKVRKSVFNG 143
>pdb|1XKU|A Chain A, Crystal Structure Of The Dimeric Protein Core Of Decorin,
The Archetypal Small Leucine-Rich Repeat Proteoglycan
Length = 330
Score = 28.9 bits (63), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 39/141 (27%), Positives = 58/141 (41%), Gaps = 32/141 (22%)
Query: 64 LRYINLSDNGFHGEIPQEIGNLYRLEKLELSNNSFSGTIPTNLSRCSELTHLRVANNKLE 123
LR + SD G ++P+++ L L+L NN + + L L + NNK+
Sbjct: 33 LRVVQCSDLGLE-KVPKDLPPDTAL--LDLQNNKITEIKDGDFKNLKNLHTLILINNKIS 89
Query: 124 GQIPKEIGSLLKLQTLALYYNNLTGQLPDFVGNLSALQVIYIRGNSLGGKIPTTLGLLRN 183
P L+KL+ L L N L +LP+ K+P TL LR
Sbjct: 90 KISPGAFAPLVKLERLYLSKNQLK-ELPE--------------------KMPKTLQELR- 127
Query: 184 LVYLNVNENQFWYV--SSFSG 202
V+EN+ V S F+G
Sbjct: 128 -----VHENEITKVRKSVFNG 143
>pdb|2JQD|A Chain A, Structure Of The Leucine-Rich Repeat Domain Of Lanp
Length = 169
Score = 28.5 bits (62), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 41/85 (48%), Gaps = 4/85 (4%)
Query: 92 ELSNNSFSGTIPTNLSRCSELTHLRVANNKLEGQIPKE-IGSLLKLQTLALYYNNLTGQL 150
ELS N SG + +C L HL ++ NK++ E + L L++L L+ +T L
Sbjct: 75 ELSENRISGDLEVLAEKCPNLKHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTN-L 133
Query: 151 PDFVGNLSAL--QVIYIRGNSLGGK 173
+ N+ L QV+Y+ G K
Sbjct: 134 NAYRENVFKLLPQVMYLDGYDRDNK 158
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.138 0.405
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,798,129
Number of Sequences: 62578
Number of extensions: 502017
Number of successful extensions: 1746
Number of sequences better than 100.0: 102
Number of HSP's better than 100.0 without gapping: 57
Number of HSP's successfully gapped in prelim test: 45
Number of HSP's that attempted gapping in prelim test: 1097
Number of HSP's gapped (non-prelim): 397
length of query: 472
length of database: 14,973,337
effective HSP length: 102
effective length of query: 370
effective length of database: 8,590,381
effective search space: 3178440970
effective search space used: 3178440970
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (25.0 bits)