Query 040195
Match_columns 472
No_of_seqs 226 out of 3043
Neff 10.7
Searched_HMMs 46136
Date Fri Mar 29 06:02:34 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040195.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/040195hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00113 leucine-rich repeat r 100.0 1.7E-46 3.7E-51 402.2 32.6 446 10-471 42-497 (968)
2 PLN00113 leucine-rich repeat r 100.0 2.4E-44 5.2E-49 385.6 27.4 418 38-467 140-589 (968)
3 KOG4194 Membrane glycoprotein 100.0 6.4E-38 1.4E-42 289.0 10.2 399 32-459 45-449 (873)
4 KOG4194 Membrane glycoprotein 100.0 1E-37 2.2E-42 287.6 7.0 380 64-471 54-438 (873)
5 KOG0444 Cytoskeletal regulator 100.0 1.6E-33 3.5E-38 262.2 -2.6 363 38-460 7-373 (1255)
6 KOG0472 Leucine-rich repeat pr 100.0 3.3E-34 7.2E-39 253.4 -13.6 405 38-462 68-541 (565)
7 KOG0444 Cytoskeletal regulator 100.0 1.7E-31 3.7E-36 248.8 -1.5 341 38-413 32-375 (1255)
8 KOG0472 Leucine-rich repeat pr 99.9 9.5E-31 2.1E-35 231.6 -8.1 381 38-438 114-541 (565)
9 KOG0618 Serine/threonine phosp 99.9 1.3E-28 2.9E-33 239.2 -5.6 406 39-459 46-510 (1081)
10 PLN03210 Resistant to P. syrin 99.9 1.6E-24 3.5E-29 233.0 25.2 363 38-435 532-903 (1153)
11 KOG0618 Serine/threonine phosp 99.9 6.5E-27 1.4E-31 227.6 -6.5 373 38-462 21-443 (1081)
12 PLN03210 Resistant to P. syrin 99.9 1.1E-21 2.3E-26 211.4 23.5 342 77-461 549-905 (1153)
13 KOG4237 Extracellular matrix p 99.9 1.3E-23 2.8E-28 186.2 -3.9 387 38-459 67-498 (498)
14 PRK15387 E3 ubiquitin-protein 99.8 8.4E-20 1.8E-24 183.3 15.2 114 111-250 202-315 (788)
15 KOG4237 Extracellular matrix p 99.8 5.1E-22 1.1E-26 176.2 -1.5 361 88-471 69-486 (498)
16 PRK15387 E3 ubiquitin-protein 99.8 6E-19 1.3E-23 177.2 16.8 265 86-420 201-465 (788)
17 cd00116 LRR_RI Leucine-rich re 99.7 1.7E-19 3.6E-24 169.5 -0.3 287 138-461 2-319 (319)
18 PRK15370 E3 ubiquitin-protein 99.7 6.3E-17 1.4E-21 163.8 13.1 245 112-413 180-428 (754)
19 cd00116 LRR_RI Leucine-rich re 99.7 9.2E-19 2E-23 164.5 -0.6 81 67-147 3-94 (319)
20 PRK15370 E3 ubiquitin-protein 99.7 8.1E-17 1.8E-21 162.9 13.1 247 134-438 178-428 (754)
21 KOG0617 Ras suppressor protein 99.6 5E-17 1.1E-21 128.4 -3.9 160 305-471 34-194 (264)
22 KOG0617 Ras suppressor protein 99.5 1.5E-16 3.3E-21 125.7 -4.1 157 58-226 29-186 (264)
23 KOG1909 Ran GTPase-activating 99.3 2E-13 4.4E-18 120.3 -2.5 210 55-278 23-258 (382)
24 KOG1909 Ran GTPase-activating 99.3 7.6E-13 1.6E-17 116.8 -0.4 235 37-274 29-311 (382)
25 KOG4658 Apoptotic ATPase [Sign 99.2 5.4E-12 1.2E-16 130.3 2.5 181 6-189 480-675 (889)
26 KOG3207 Beta-tubulin folding c 99.2 7E-12 1.5E-16 113.9 0.7 132 305-438 198-339 (505)
27 KOG3207 Beta-tubulin folding c 99.1 1.2E-11 2.7E-16 112.3 -0.7 210 60-275 119-340 (505)
28 COG4886 Leucine-rich repeat (L 99.1 1.4E-10 3.1E-15 112.1 6.4 156 305-468 141-296 (394)
29 KOG0532 Leucine-rich repeat (L 99.0 8.2E-12 1.8E-16 117.0 -4.7 138 321-467 114-251 (722)
30 PLN03150 hypothetical protein; 99.0 1.5E-09 3.3E-14 109.9 11.0 127 17-144 390-525 (623)
31 PF14580 LRR_9: Leucine-rich r 99.0 2.5E-10 5.4E-15 94.6 4.1 82 110-194 42-125 (175)
32 PF14580 LRR_9: Leucine-rich r 99.0 1.1E-09 2.3E-14 90.9 5.8 85 108-197 17-103 (175)
33 KOG1259 Nischarin, modulator o 98.9 2.1E-10 4.6E-15 99.4 1.5 131 325-462 281-412 (490)
34 PLN03150 hypothetical protein; 98.9 2.5E-09 5.3E-14 108.4 7.7 106 354-460 420-526 (623)
35 KOG4658 Apoptotic ATPase [Sign 98.9 1.1E-09 2.4E-14 113.4 5.0 131 60-193 521-653 (889)
36 KOG1259 Nischarin, modulator o 98.9 6.5E-10 1.4E-14 96.5 2.4 205 54-274 206-412 (490)
37 COG4886 Leucine-rich repeat (L 98.9 3.7E-09 7.9E-14 102.3 7.4 194 66-275 97-291 (394)
38 KOG0532 Leucine-rich repeat (L 98.8 1.1E-10 2.5E-15 109.5 -4.1 170 65-250 78-247 (722)
39 PF13855 LRR_8: Leucine rich r 98.8 4.8E-09 1E-13 71.3 3.8 59 329-387 2-60 (61)
40 PF13855 LRR_8: Leucine rich r 98.7 1.3E-08 2.9E-13 69.2 4.5 61 352-412 1-61 (61)
41 KOG2120 SCF ubiquitin ligase, 98.7 2.6E-10 5.6E-15 98.8 -5.7 86 183-274 186-273 (419)
42 KOG0531 Protein phosphatase 1, 98.6 5.4E-09 1.2E-13 101.3 -0.0 81 330-413 234-318 (414)
43 KOG2120 SCF ubiquitin ligase, 98.6 1E-09 2.2E-14 95.2 -6.1 59 135-193 186-245 (419)
44 COG5238 RNA1 Ran GTPase-activa 98.6 2.5E-08 5.4E-13 85.6 1.7 234 37-274 29-316 (388)
45 KOG0531 Protein phosphatase 1, 98.5 1E-08 2.2E-13 99.4 -2.3 82 306-390 234-319 (414)
46 KOG4579 Leucine-rich repeat (L 98.3 3.7E-08 8E-13 75.6 -2.7 128 330-463 29-160 (177)
47 COG5238 RNA1 Ran GTPase-activa 98.3 1.6E-07 3.4E-12 80.8 0.7 148 128-278 86-259 (388)
48 KOG2982 Uncharacterized conser 98.3 2E-07 4.2E-12 81.3 0.6 113 130-249 41-158 (418)
49 KOG2982 Uncharacterized conser 98.3 4.1E-07 8.8E-12 79.4 2.5 187 83-275 68-263 (418)
50 KOG1859 Leucine-rich repeat pr 98.2 1.9E-08 4.1E-13 97.6 -6.8 126 329-461 165-291 (1096)
51 KOG4341 F-box protein containi 98.2 3.6E-08 7.9E-13 89.7 -5.4 134 326-460 292-437 (483)
52 KOG4341 F-box protein containi 98.2 2.7E-08 5.9E-13 90.5 -6.2 157 111-272 139-305 (483)
53 KOG1859 Leucine-rich repeat pr 98.2 1.2E-08 2.5E-13 99.0 -9.8 178 55-249 102-291 (1096)
54 KOG4579 Leucine-rich repeat (L 98.1 1.3E-07 2.8E-12 72.7 -3.2 137 305-445 28-166 (177)
55 KOG1644 U2-associated snRNP A' 97.9 2E-05 4.4E-10 65.1 5.4 107 305-413 43-153 (233)
56 KOG3665 ZYG-1-like serine/thre 97.9 2.7E-06 5.8E-11 86.4 0.4 134 38-173 122-265 (699)
57 PF12799 LRR_4: Leucine Rich r 97.8 1.5E-05 3.4E-10 49.4 2.9 37 425-463 2-38 (44)
58 PF13306 LRR_5: Leucine rich r 97.8 6E-05 1.3E-09 60.1 7.1 123 322-451 6-128 (129)
59 PF13306 LRR_5: Leucine rich r 97.8 8.8E-05 1.9E-09 59.1 7.1 60 57-118 7-66 (129)
60 PRK15386 type III secretion pr 97.8 0.0001 2.2E-09 69.2 8.3 31 236-271 51-82 (426)
61 KOG1644 U2-associated snRNP A' 97.7 7.1E-05 1.5E-09 62.0 5.8 12 234-245 137-148 (233)
62 PRK15386 type III secretion pr 97.7 0.00017 3.7E-09 67.8 8.7 72 304-388 52-124 (426)
63 KOG3665 ZYG-1-like serine/thre 97.7 1.8E-05 3.9E-10 80.5 2.4 150 305-457 123-283 (699)
64 PF12799 LRR_4: Leucine Rich r 97.7 5E-05 1.1E-09 47.1 3.2 36 377-413 2-37 (44)
65 KOG1947 Leucine rich repeat pr 97.3 2.5E-05 5.3E-10 77.9 -3.0 176 83-273 185-374 (482)
66 PF00560 LRR_1: Leucine Rich R 97.2 0.00021 4.5E-09 36.8 1.4 22 450-472 1-22 (22)
67 KOG1947 Leucine rich repeat pr 97.0 5.2E-05 1.1E-09 75.6 -3.3 241 107-389 185-440 (482)
68 KOG2123 Uncharacterized conser 97.0 1.5E-05 3.2E-10 69.2 -6.4 100 37-140 18-123 (388)
69 KOG2739 Leucine-rich acidic nu 96.9 0.00041 8.8E-09 60.1 1.6 88 324-413 39-129 (260)
70 KOG2123 Uncharacterized conser 96.6 6.1E-05 1.3E-09 65.5 -5.4 99 86-188 19-123 (388)
71 KOG2739 Leucine-rich acidic nu 96.5 0.0015 3.2E-08 56.7 2.3 13 158-170 91-103 (260)
72 KOG3864 Uncharacterized conser 95.6 0.002 4.2E-08 53.7 -1.2 84 305-388 102-188 (221)
73 KOG4308 LRR-containing protein 94.5 0.00017 3.6E-09 70.3 -12.3 133 306-439 146-304 (478)
74 PF08263 LRRNT_2: Leucine rich 94.4 0.034 7.3E-07 34.2 2.1 24 11-34 18-43 (43)
75 KOG3864 Uncharacterized conser 94.3 0.006 1.3E-07 50.9 -1.8 83 38-120 101-186 (221)
76 PF13504 LRR_7: Leucine rich r 94.2 0.028 6E-07 26.7 1.1 14 449-462 1-14 (17)
77 PF00560 LRR_1: Leucine Rich R 94.0 0.028 6.1E-07 28.8 1.0 8 404-411 4-11 (22)
78 PF13516 LRR_6: Leucine Rich r 93.8 0.0097 2.1E-07 31.3 -1.0 22 449-470 2-23 (24)
79 KOG4308 LRR-containing protein 93.0 0.00076 1.6E-08 65.9 -10.7 158 305-463 116-304 (478)
80 KOG0473 Leucine-rich repeat pr 90.4 0.0084 1.8E-07 51.2 -5.7 96 320-418 34-129 (326)
81 smart00369 LRR_TYP Leucine-ric 88.5 0.3 6.4E-06 26.0 1.3 22 448-469 1-22 (26)
82 smart00370 LRR Leucine-rich re 88.5 0.3 6.4E-06 26.0 1.3 22 448-469 1-22 (26)
83 KOG0473 Leucine-rich repeat pr 87.6 0.024 5.2E-07 48.5 -4.9 86 348-437 38-123 (326)
84 smart00368 LRR_RI Leucine rich 76.2 1.7 3.6E-05 23.7 1.2 16 449-464 2-17 (28)
85 smart00364 LRR_BAC Leucine-ric 71.6 2.6 5.7E-05 22.5 1.2 18 449-467 2-19 (26)
86 KOG3763 mRNA export factor TAP 70.9 2.3 5E-05 41.6 1.5 69 179-252 215-285 (585)
87 smart00365 LRR_SD22 Leucine-ri 68.7 3.9 8.5E-05 21.8 1.5 14 449-462 2-15 (26)
88 KOG4242 Predicted myosin-I-bin 65.4 26 0.00056 34.1 7.0 62 352-413 413-481 (553)
89 KOG4242 Predicted myosin-I-bin 59.6 30 0.00066 33.6 6.5 85 329-413 355-453 (553)
90 KOG3763 mRNA export factor TAP 53.5 7.5 0.00016 38.3 1.5 11 328-338 244-254 (585)
91 smart00367 LRR_CC Leucine-rich 51.6 9.6 0.00021 20.1 1.2 17 448-464 1-18 (26)
No 1
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=1.7e-46 Score=402.17 Aligned_cols=446 Identities=33% Similarity=0.530 Sum_probs=337.8
Q ss_pred CCCCCCCCCCCCCCCcccccceeeCCCCCceEEEECCCCccCcccCccccCCCCccEEeccCCcCccCcchh-hhcCCCC
Q 040195 10 HDPSGVTSSWNNTINLCQWMGVTCGHRHQRVTELDLSNQRIGGVLSPYVGNLSFLRYINLSDNGFHGEIPQE-IGNLYRL 88 (472)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~-~~~l~~L 88 (472)
.+|.+.+++|+...+||.|.|+.|.. ..+++.|+++++.+.+..+..+..+++|++|++++|.+....|.. +..+.+|
T Consensus 42 ~~~~~~~~~w~~~~~~c~w~gv~c~~-~~~v~~L~L~~~~i~~~~~~~~~~l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L 120 (968)
T PLN00113 42 NDPLKYLSNWNSSADVCLWQGITCNN-SSRVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSL 120 (968)
T ss_pred CCCcccCCCCCCCCCCCcCcceecCC-CCcEEEEEecCCCccccCChHHhCCCCCCEEECCCCccCCcCChHHhccCCCC
Confidence 46778899999888999999999974 368999999999998888888999999999999999987666655 4589999
Q ss_pred CEEEccCcccCCCCCcccCCCCCCcEEEcccCcCcccCCccccCCCCCcEEEccccCCCCCCCccccCCCCccEEEecCC
Q 040195 89 EKLELSNNSFSGTIPTNLSRCSELTHLRVANNKLEGQIPKEIGSLLKLQTLALYYNNLTGQLPDFVGNLSALQVIYIRGN 168 (472)
Q Consensus 89 ~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~i~~~~~~~l~~~~~L~~L~l~~~ 168 (472)
++|++++|.+.+..|. ..+++|++|++++|.+.+..|..+..+++|++|++++|.+.+..|..+.++++|++|++++|
T Consensus 121 ~~L~Ls~n~l~~~~p~--~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n 198 (968)
T PLN00113 121 RYLNLSNNNFTGSIPR--GSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASN 198 (968)
T ss_pred CEEECcCCccccccCc--cccCCCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCC
Confidence 9999999998866664 46789999999999998788888999999999999999988888888999999999999999
Q ss_pred ccccccccccccCCCccEEEccCCccccccccccccChhhhcCCCCccEEEcccccccccCCccCcCCCCCCEEecCCCc
Q 040195 169 SLGGKIPTTLGLLRNLVYLNVNENQFWYVSSFSGSLPFDILVNLPNLKKLCIAENNFVGSIPDSLSNASNLELLELAGNQ 248 (472)
Q Consensus 169 ~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~ 248 (472)
.+.+..|..+..+++|+.|++++|.+. +.+| ..+..+++|++|++++|.+.+..|..++++++|+.|++++|.
T Consensus 199 ~l~~~~p~~l~~l~~L~~L~L~~n~l~------~~~p-~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~ 271 (968)
T PLN00113 199 QLVGQIPRELGQMKSLKWIYLGYNNLS------GEIP-YEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNK 271 (968)
T ss_pred CCcCcCChHHcCcCCccEEECcCCccC------CcCC-hhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCe
Confidence 998888888999999999999998863 2233 345688899999999999888888889999999999999998
Q ss_pred ccccccccccccCCCCeEEcCCCcCCCCCCCCcchhhhhcccCCCc---------CCchhhhccccccEEEeecccccCc
Q 040195 249 FEGKVSIDFSSLKNLAVLNLERNNLGIGTANDLGFVTFLTNCSSLK---------LPHSIANLSSTMTHFYIGGNQILGI 319 (472)
Q Consensus 249 ~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~---------~~~~~~~~~~~l~~l~l~~~~~~~~ 319 (472)
+.+..+..+..+++|++|++++|.+.......+. .+.+++.+. .|..+.. .++++.|++++|.+...
T Consensus 272 l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~---~l~~L~~L~l~~n~~~~~~~~~~~~-l~~L~~L~L~~n~l~~~ 347 (968)
T PLN00113 272 LSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVI---QLQNLEILHLFSNNFTGKIPVALTS-LPRLQVLQLWSNKFSGE 347 (968)
T ss_pred eeccCchhHhhccCcCEEECcCCeeccCCChhHc---CCCCCcEEECCCCccCCcCChhHhc-CCCCCEEECcCCCCcCc
Confidence 8877777888899999999999887532211111 111111111 1222222 23566666666666655
Q ss_pred ccccccCccCcceEeccccccccCcchhhcCCCCCcEEEccCCcCccccccchhcccccCeeeccCCcccccCCcCccCC
Q 040195 320 IHFGIRNLVNLIALGMQSNQLHGTIPDVIGELKNLQILSLFGNFLHGSIPSSLGNLTKLANLELSSNSLQGNIPLSVGNC 399 (472)
Q Consensus 320 ~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~ 399 (472)
.+..+..+++|+.|++++|.+.+..|..+..+++|+.|++++|.+.+..|..+..+++|+.|++++|++++.+|..+..+
T Consensus 348 ~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l 427 (968)
T PLN00113 348 IPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKL 427 (968)
T ss_pred CChHHhCCCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeECChhHhcC
Confidence 56666666666666666666666666666666666666666666666666666666777777777777766666666667
Q ss_pred CCCceEeecCCcccccCChhhhhhcccceEEEcCCCcccccccccccCCCCCceEeccCCeeccccCCcccc
Q 040195 400 QNLIGFDASHITLTGALPQQLLSITTLSLYLDLSHNLLNGSLLLQVGNLKNLILLDISGNQFSGVIPVTLSI 471 (472)
Q Consensus 400 ~~L~~L~ls~~~~~~~~~~~l~~~~~l~~~L~ls~n~l~~~~~~~l~~~~~L~~L~L~~n~~~~~~p~~~~~ 471 (472)
+.|+.|++++|.+.+.++..+..+++|+ .|++++|++.+..|..+ ..++|+.|++++|++++.+|..|.+
T Consensus 428 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~-~L~L~~n~~~~~~p~~~-~~~~L~~L~ls~n~l~~~~~~~~~~ 497 (968)
T PLN00113 428 PLVYFLDISNNNLQGRINSRKWDMPSLQ-MLSLARNKFFGGLPDSF-GSKRLENLDLSRNQFSGAVPRKLGS 497 (968)
T ss_pred CCCCEEECcCCcccCccChhhccCCCCc-EEECcCceeeeecCccc-ccccceEEECcCCccCCccChhhhh
Confidence 7777777777777666666666666666 77777777766555543 3467777777777777777766543
No 2
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=2.4e-44 Score=385.56 Aligned_cols=418 Identities=34% Similarity=0.577 Sum_probs=231.0
Q ss_pred CceEEEECCCCccCcccCccccCCCCccEEeccCCcCccCcchhhhcCCCCCEEEccCcccCCCCCcccCCCCCCcEEEc
Q 040195 38 QRVTELDLSNQRIGGVLSPYVGNLSFLRYINLSDNGFHGEIPQEIGNLYRLEKLELSNNSFSGTIPTNLSRCSELTHLRV 117 (472)
Q Consensus 38 ~~l~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l 117 (472)
+++++|++++|.+.+..+..+..+++|++|++++|.+....|..+.++++|++|++++|.+.+..|..+.++++|++|++
T Consensus 140 ~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L 219 (968)
T PLN00113 140 PNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYL 219 (968)
T ss_pred CCCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEEC
Confidence 44455555555544444444555555555555555554445555555555555555555555445555555555555555
Q ss_pred ccCcCcccCCccccCCCCCcEEEccccCCCCCCCccccCCCCccEEEecCCccccccccccccCCCccEEEccCCccccc
Q 040195 118 ANNKLEGQIPKEIGSLLKLQTLALYYNNLTGQLPDFVGNLSALQVIYIRGNSLGGKIPTTLGLLRNLVYLNVNENQFWYV 197 (472)
Q Consensus 118 ~~~~~~~~~~~~l~~l~~L~~L~l~~~~i~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~ 197 (472)
++|.+.+..|..+.++++|++|++++|.+.+..|..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+.
T Consensus 220 ~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~-- 297 (968)
T PLN00113 220 GYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLS-- 297 (968)
T ss_pred cCCccCCcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeec--
Confidence 555555445555555555555555555555455555555555555555555555445555555555555555555431
Q ss_pred cccccccChhhhcCCCCccEEEcccccccccCCccCcCCCCCCEEecCCCcccccccccccccCCCCeEEcCCCcCCCCC
Q 040195 198 SSFSGSLPFDILVNLPNLKKLCIAENNFVGSIPDSLSNASNLELLELAGNQFEGKVSIDFSSLKNLAVLNLERNNLGIGT 277 (472)
Q Consensus 198 ~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~ 277 (472)
+.+ ...+..+++|+.|++++|.+.+..|..+..+++|+.|++++|.+.+..+..+..+++|+.|++++|.+....
T Consensus 298 ----~~~-p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~ 372 (968)
T PLN00113 298 ----GEI-PELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEI 372 (968)
T ss_pred ----cCC-ChhHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeC
Confidence 111 123345556666666666555555555555666666666666555555555555566666666665543211
Q ss_pred CCCcchhhhhcccCCC---------cCCchhhhccccccEEEeecccccCcccccccCccCcceEeccccccccCcchhh
Q 040195 278 ANDLGFVTFLTNCSSL---------KLPHSIANLSSTMTHFYIGGNQILGIIHFGIRNLVNLIALGMQSNQLHGTIPDVI 348 (472)
Q Consensus 278 ~~~~~~~~~~~~~~~l---------~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~ 348 (472)
...+.. ..++..+ .+|..+.. .++++.+++++|.++...+..+..+++|+.+++++|.+.+.++..+
T Consensus 373 p~~~~~---~~~L~~L~l~~n~l~~~~p~~~~~-~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~ 448 (968)
T PLN00113 373 PEGLCS---SGNLFKLILFSNSLEGEIPKSLGA-CRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRK 448 (968)
T ss_pred ChhHhC---cCCCCEEECcCCEecccCCHHHhC-CCCCCEEECcCCEeeeECChhHhcCCCCCEEECcCCcccCccChhh
Confidence 111100 0001100 01111111 2245555555555544444444444444444444444444333333
Q ss_pred cCC-----------------------CCCcEEEccCCcCccccccchhcccccCeeeccCCcccccCCcCccCCCCCceE
Q 040195 349 GEL-----------------------KNLQILSLFGNFLHGSIPSSLGNLTKLANLELSSNSLQGNIPLSVGNCQNLIGF 405 (472)
Q Consensus 349 ~~~-----------------------~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L 405 (472)
..+ ++|+.|++++|++.+..|..+..+++|+.|++++|.+.+.+|..+..+++|++|
T Consensus 449 ~~l~~L~~L~L~~n~~~~~~p~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L 528 (968)
T PLN00113 449 WDMPSLQMLSLARNKFFGGLPDSFGSKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSL 528 (968)
T ss_pred ccCCCCcEEECcCceeeeecCcccccccceEEECcCCccCCccChhhhhhhccCEEECcCCcceeeCChHHcCccCCCEE
Confidence 333 455556666666655566666666777777777777776677777777777777
Q ss_pred eecCCcccccCChhhhhhcccceEEEcCCCcccccccccccCCCCCceEeccCCeeccccCC
Q 040195 406 DASHITLTGALPQQLLSITTLSLYLDLSHNLLNGSLLLQVGNLKNLILLDISGNQFSGVIPV 467 (472)
Q Consensus 406 ~ls~~~~~~~~~~~l~~~~~l~~~L~ls~n~l~~~~~~~l~~~~~L~~L~L~~n~~~~~~p~ 467 (472)
++++|.+++.+|..+..+++|+ .|++++|++.+.+|..+.++++|+.|++++|++++.+|+
T Consensus 529 ~Ls~N~l~~~~p~~~~~l~~L~-~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~~~p~ 589 (968)
T PLN00113 529 DLSHNQLSGQIPASFSEMPVLS-QLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHGSLPS 589 (968)
T ss_pred ECCCCcccccCChhHhCcccCC-EEECCCCcccccCChhHhcCcccCEEeccCCcceeeCCC
Confidence 7777777766777777777777 777777777777777777777777777777777777764
No 3
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=100.00 E-value=6.4e-38 Score=288.98 Aligned_cols=399 Identities=19% Similarity=0.198 Sum_probs=321.5
Q ss_pred eeCCCCC-ceEEEECCCCccCcccCccccCC--CCccEEeccCCcCccCcchhhhcCCCCCEEEccCcccCCCCCcccCC
Q 040195 32 TCGHRHQ-RVTELDLSNQRIGGVLSPYVGNL--SFLRYINLSDNGFHGEIPQEIGNLYRLEKLELSNNSFSGTIPTNLSR 108 (472)
Q Consensus 32 ~~~~~~~-~l~~L~l~~~~~~~~~~~~l~~~--~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~l~~ 108 (472)
.|.+.++ +.+-+|.++..+.......+..+ ..-+.|++++|.+..+.+..|.++++|+++++..|.++ .+|+....
T Consensus 45 ~cpa~c~c~~~lldcs~~~lea~~~~~l~g~lp~~t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt-~IP~f~~~ 123 (873)
T KOG4194|consen 45 ECPATCPCNTRLLDCSDRELEAIDKSRLKGFLPSQTQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELT-RIPRFGHE 123 (873)
T ss_pred cCCCcCCCCceeeecCccccccccccccCCcCccceeeeeccccccccCcHHHHhcCCcceeeeeccchhh-hccccccc
Confidence 3433333 34568888888766544444433 34466999999999999999999999999999999988 77887777
Q ss_pred CCCCcEEEcccCcCcccCCccccCCCCCcEEEccccCCCCCCCccccCCCCccEEEecCCccccccccccccCCCccEEE
Q 040195 109 CSELTHLRVANNKLEGQIPKEIGSLLKLQTLALYYNNLTGQLPDFVGNLSALQVIYIRGNSLGGKIPTTLGLLRNLVYLN 188 (472)
Q Consensus 109 l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~i~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~ 188 (472)
..+|+.|++.+|.+.....+.++.++.|++||++.|.|..+....|..-.++++|++++|.|+......|..+.+|..|.
T Consensus 124 sghl~~L~L~~N~I~sv~se~L~~l~alrslDLSrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlk 203 (873)
T KOG4194|consen 124 SGHLEKLDLRHNLISSVTSEELSALPALRSLDLSRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLK 203 (873)
T ss_pred ccceeEEeeeccccccccHHHHHhHhhhhhhhhhhchhhcccCCCCCCCCCceEEeeccccccccccccccccchheeee
Confidence 78899999999999877788899999999999999999866666677778899999999999988888999999999999
Q ss_pred ccCCccccccccccccChhhhcCCCCccEEEcccccccccCCccCcCCCCCCEEecCCCcccccccccccccCCCCeEEc
Q 040195 189 VNENQFWYVSSFSGSLPFDILVNLPNLKKLCIAENNFVGSIPDSLSNASNLELLELAGNQFEGKVSIDFSSLKNLAVLNL 268 (472)
Q Consensus 189 l~~~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l 268 (472)
++.|++ ..+|...|..+++|+.|+|..|++...-.-.|+++++|+.|.+..|.+..-....|-.+.++++|++
T Consensus 204 LsrNri-------ttLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L 276 (873)
T KOG4194|consen 204 LSRNRI-------TTLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNL 276 (873)
T ss_pred cccCcc-------cccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeec
Confidence 999998 7778888988999999999999987544567899999999999999998777788999999999999
Q ss_pred CCCcCCCCCCCCcchhhhhcccCCCcCCchhhhccccccEEEeecccccCcccccccCccCcceEeccccccccCcchhh
Q 040195 269 ERNNLGIGTANDLGFVTFLTNCSSLKLPHSIANLSSTMTHFYIGGNQILGIIHFGIRNLVNLIALGMQSNQLHGTIPDVI 348 (472)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~ 348 (472)
+.|++...... +++. .+.|+.|+++.|.|..+....+.-+++|++|+|++|.|+...+..|
T Consensus 277 ~~N~l~~vn~g------------------~lfg-Lt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf 337 (873)
T KOG4194|consen 277 ETNRLQAVNEG------------------WLFG-LTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSF 337 (873)
T ss_pred ccchhhhhhcc------------------cccc-cchhhhhccchhhhheeecchhhhcccceeEeccccccccCChhHH
Confidence 99987632221 1222 2378888888888888888888888888888888888887777788
Q ss_pred cCCCCCcEEEccCCcCccccccchhcccccCeeeccCCccccc---CCcCccCCCCCceEeecCCcccccCChhhhhhcc
Q 040195 349 GELKNLQILSLFGNFLHGSIPSSLGNLTKLANLELSSNSLQGN---IPLSVGNCQNLIGFDASHITLTGALPQQLLSITT 425 (472)
Q Consensus 349 ~~~~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~~~~~~~---~~~~~~~~~~L~~L~ls~~~~~~~~~~~l~~~~~ 425 (472)
..+..|++|.|+.|.+....-.+|..+++|++|+|++|.+... ....+..+++|+.|.+.+|++...--..|..+..
T Consensus 338 ~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk~I~krAfsgl~~ 417 (873)
T KOG4194|consen 338 RVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLKSIPKRAFSGLEA 417 (873)
T ss_pred HHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCceeeecchhhhccCcc
Confidence 8888888888888888755555777888888888888887643 3445667888888888888887323367778888
Q ss_pred cceEEEcCCCcccccccccccCCCCCceEeccCC
Q 040195 426 LSLYLDLSHNLLNGSLLLQVGNLKNLILLDISGN 459 (472)
Q Consensus 426 l~~~L~ls~n~l~~~~~~~l~~~~~L~~L~L~~n 459 (472)
|+ .|||.+|.|-.+.+.+|.++ .|++|.+..-
T Consensus 418 LE-~LdL~~NaiaSIq~nAFe~m-~Lk~Lv~nSs 449 (873)
T KOG4194|consen 418 LE-HLDLGDNAIASIQPNAFEPM-ELKELVMNSS 449 (873)
T ss_pred cc-eecCCCCcceeecccccccc-hhhhhhhccc
Confidence 88 88888888887888888887 8888776553
No 4
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=100.00 E-value=1e-37 Score=287.65 Aligned_cols=380 Identities=21% Similarity=0.211 Sum_probs=326.8
Q ss_pred ccEEeccCCcCccCcchhhhcC--CCCCEEEccCcccCCCCCcccCCCCCCcEEEcccCcCcccCCccccCCCCCcEEEc
Q 040195 64 LRYINLSDNGFHGEIPQEIGNL--YRLEKLELSNNSFSGTIPTNLSRCSELTHLRVANNKLEGQIPKEIGSLLKLQTLAL 141 (472)
Q Consensus 64 L~~L~L~~~~~~~~~~~~~~~l--~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l 141 (472)
-+.|+.++..+....-..+... +.-+.|++++|.+....+..|.++++|+.+.+.+|.++ .+|.......+|++|++
T Consensus 54 ~~lldcs~~~lea~~~~~l~g~lp~~t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt-~IP~f~~~sghl~~L~L 132 (873)
T KOG4194|consen 54 TRLLDCSDRELEAIDKSRLKGFLPSQTQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELT-RIPRFGHESGHLEKLDL 132 (873)
T ss_pred ceeeecCccccccccccccCCcCccceeeeeccccccccCcHHHHhcCCcceeeeeccchhh-hcccccccccceeEEee
Confidence 3567777777765443444443 33466999999999888888999999999999999998 67776666678999999
Q ss_pred cccCCCCCCCccccCCCCccEEEecCCccccccccccccCCCccEEEccCCccccccccccccChhhhcCCCCccEEEcc
Q 040195 142 YYNNLTGQLPDFVGNLSALQVIYIRGNSLGGKIPTTLGLLRNLVYLNVNENQFWYVSSFSGSLPFDILVNLPNLKKLCIA 221 (472)
Q Consensus 142 ~~~~i~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~ 221 (472)
.+|.|+++-...+..++.|+.|+++.|.++......|..-.++++|++++|+|.++ ..+.|..+.+|..|.|+
T Consensus 133 ~~N~I~sv~se~L~~l~alrslDLSrN~is~i~~~sfp~~~ni~~L~La~N~It~l-------~~~~F~~lnsL~tlkLs 205 (873)
T KOG4194|consen 133 RHNLISSVTSEELSALPALRSLDLSRNLISEIPKPSFPAKVNIKKLNLASNRITTL-------ETGHFDSLNSLLTLKLS 205 (873)
T ss_pred eccccccccHHHHHhHhhhhhhhhhhchhhcccCCCCCCCCCceEEeecccccccc-------ccccccccchheeeecc
Confidence 99999988888899999999999999999866666777778999999999999555 34556677899999999
Q ss_pred cccccccCCccCcCCCCCCEEecCCCcccccccccccccCCCCeEEcCCCcCCCCCCCCcchhhhhcccCCCcCCchhhh
Q 040195 222 ENNFVGSIPDSLSNASNLELLELAGNQFEGKVSIDFSSLKNLAVLNLERNNLGIGTANDLGFVTFLTNCSSLKLPHSIAN 301 (472)
Q Consensus 222 ~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 301 (472)
.|.++...+..|.++++|+.|++..|++....-..|.++++|+.|.+..|.+. ++....+.
T Consensus 206 rNrittLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~-------------------kL~DG~Fy 266 (873)
T KOG4194|consen 206 RNRITTLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDIS-------------------KLDDGAFY 266 (873)
T ss_pred cCcccccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhhhcCcc-------------------cccCccee
Confidence 99999888888999999999999999998655567899999999999999886 34445555
Q ss_pred ccccccEEEeecccccCcccccccCccCcceEeccccccccCcchhhcCCCCCcEEEccCCcCccccccchhcccccCee
Q 040195 302 LSSTMTHFYIGGNQILGIIHFGIRNLVNLIALGMQSNQLHGTIPDVIGELKNLQILSLFGNFLHGSIPSSLGNLTKLANL 381 (472)
Q Consensus 302 ~~~~l~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L 381 (472)
...+++.|++..|.++.....++.+++.|+.|++|+|.|...-++.-..+++|++|+|+.|+++...+.+|..+..|++|
T Consensus 267 ~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~L 346 (873)
T KOG4194|consen 267 GLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEEL 346 (873)
T ss_pred eecccceeecccchhhhhhcccccccchhhhhccchhhhheeecchhhhcccceeEeccccccccCChhHHHHHHHhhhh
Confidence 56699999999999999989999999999999999999998777777788999999999999998888899999999999
Q ss_pred eccCCcccccCCcCccCCCCCceEeecCCcccccC---ChhhhhhcccceEEEcCCCcccccccccccCCCCCceEeccC
Q 040195 382 ELSSNSLQGNIPLSVGNCQNLIGFDASHITLTGAL---PQQLLSITTLSLYLDLSHNLLNGSLLLQVGNLKNLILLDISG 458 (472)
Q Consensus 382 ~l~~~~~~~~~~~~~~~~~~L~~L~ls~~~~~~~~---~~~l~~~~~l~~~L~ls~n~l~~~~~~~l~~~~~L~~L~L~~ 458 (472)
+|+.|.+...-..+|..+++|++||+++|.+...+ ...|..+++|+ .|.+.||++..+.-.+|.++.+|+.|||.+
T Consensus 347 nLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~Lr-kL~l~gNqlk~I~krAfsgl~~LE~LdL~~ 425 (873)
T KOG4194|consen 347 NLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLR-KLRLTGNQLKSIPKRAFSGLEALEHLDLGD 425 (873)
T ss_pred cccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhh-heeecCceeeecchhhhccCcccceecCCC
Confidence 99999999777778889999999999999987333 35677899999 999999999977779999999999999999
Q ss_pred CeeccccCCcccc
Q 040195 459 NQFSGVIPVTLSI 471 (472)
Q Consensus 459 n~~~~~~p~~~~~ 471 (472)
|.+...-|..|..
T Consensus 426 NaiaSIq~nAFe~ 438 (873)
T KOG4194|consen 426 NAIASIQPNAFEP 438 (873)
T ss_pred Ccceeeccccccc
Confidence 9999888988864
No 5
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.97 E-value=1.6e-33 Score=262.19 Aligned_cols=363 Identities=26% Similarity=0.365 Sum_probs=186.0
Q ss_pred CceEEEECCCCccC-cccCccccCCCCccEEeccCCcCccCcchhhhcCCCCCEEEccCcccCCCCCcccCCCCCCcEEE
Q 040195 38 QRVTELDLSNQRIG-GVLSPYVGNLSFLRYINLSDNGFHGEIPQEIGNLYRLEKLELSNNSFSGTIPTNLSRCSELTHLR 116 (472)
Q Consensus 38 ~~l~~L~l~~~~~~-~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~ 116 (472)
|=|+-+|+++|.++ +-.++....|+.++.|.|....+. ..|+.++.+.+|++|.+++|++. ..-..+..++.|+.+.
T Consensus 7 pFVrGvDfsgNDFsg~~FP~~v~qMt~~~WLkLnrt~L~-~vPeEL~~lqkLEHLs~~HN~L~-~vhGELs~Lp~LRsv~ 84 (1255)
T KOG0444|consen 7 PFVRGVDFSGNDFSGDRFPHDVEQMTQMTWLKLNRTKLE-QVPEELSRLQKLEHLSMAHNQLI-SVHGELSDLPRLRSVI 84 (1255)
T ss_pred ceeecccccCCcCCCCcCchhHHHhhheeEEEechhhhh-hChHHHHHHhhhhhhhhhhhhhH-hhhhhhccchhhHHHh
Confidence 44556666666665 334555566666666666665554 45555666666666666666554 2222344555566665
Q ss_pred cccCcCc-ccCCccccCCCCCcEEEccccCCCCCCCccccCCCCccEEEecCCccccccccccccCCCccEEEccCCccc
Q 040195 117 VANNKLE-GQIPKEIGSLLKLQTLALYYNNLTGQLPDFVGNLSALQVIYIRGNSLGGKIPTTLGLLRNLVYLNVNENQFW 195 (472)
Q Consensus 117 l~~~~~~-~~~~~~l~~l~~L~~L~l~~~~i~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~ 195 (472)
+.+|++. +-+|..+.++..|..|++++|.++ ..|..+....++-.|++++|+|.....+.+.++..|-.|+++.|++
T Consensus 85 ~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~-EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~NrL- 162 (1255)
T KOG0444|consen 85 VRDNNLKNSGIPTDIFRLKDLTILDLSHNQLR-EVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNNRL- 162 (1255)
T ss_pred hhccccccCCCCchhcccccceeeecchhhhh-hcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccchh-
Confidence 5555553 123444555555666666665555 4555555555555555555555433333444555555555555554
Q ss_pred cccccccccChhhhcCCCCccEEEcccccccccCCccCcCCCCCCEEecCCCccc-ccccccccccCCCCeEEcCCCcCC
Q 040195 196 YVSSFSGSLPFDILVNLPNLKKLCIAENNFVGSIPDSLSNASNLELLELAGNQFE-GKVSIDFSSLKNLAVLNLERNNLG 274 (472)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~-~~~~~~l~~l~~L~~L~l~~~~~~ 274 (472)
..+|+.. ..+.+|++|.|++|++...-...+..+.+|+.|++++.+=+ ...+.++..+.+|+.++++.|.+
T Consensus 163 ------e~LPPQ~-RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~L- 234 (1255)
T KOG0444|consen 163 ------EMLPPQI-RRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNL- 234 (1255)
T ss_pred ------hhcCHHH-HHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCC-
Confidence 3333322 23445555555555543221122223344444555444221 12333444455555555555544
Q ss_pred CCCCCCcchhhhhcccCCCcCCchhhhccccccEEEeecccccCcccccccCccCcceEeccccccccCcchhhcCCCCC
Q 040195 275 IGTANDLGFVTFLTNCSSLKLPHSIANLSSTMTHFYIGGNQILGIIHFGIRNLVNLIALGMQSNQLHGTIPDVIGELKNL 354 (472)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L 354 (472)
.. .|..+..+++|+.|+||+|.|+ ......+.-.+|
T Consensus 235 ------------------------------------------p~-vPecly~l~~LrrLNLS~N~it-eL~~~~~~W~~l 270 (1255)
T KOG0444|consen 235 ------------------------------------------PI-VPECLYKLRNLRRLNLSGNKIT-ELNMTEGEWENL 270 (1255)
T ss_pred ------------------------------------------Cc-chHHHhhhhhhheeccCcCcee-eeeccHHHHhhh
Confidence 32 2334445555555555555555 222222333455
Q ss_pred cEEEccCCcCccccccchhcccccCeeeccCCcccc-cCCcCccCCCCCceEeecCCcccccCChhhhhhcccceEEEcC
Q 040195 355 QILSLFGNFLHGSIPSSLGNLTKLANLELSSNSLQG-NIPLSVGNCQNLIGFDASHITLTGALPQQLLSITTLSLYLDLS 433 (472)
Q Consensus 355 ~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~~~~~~-~~~~~~~~~~~L~~L~ls~~~~~~~~~~~l~~~~~l~~~L~ls 433 (472)
++|+++.|+++ .+|+++.++++|+.|...+|+++- -+|..++.+..|+.+..++|.+. -.|..++.|..|+ .|.|+
T Consensus 271 EtLNlSrNQLt-~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~LE-lVPEglcRC~kL~-kL~L~ 347 (1255)
T KOG0444|consen 271 ETLNLSRNQLT-VLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNKLE-LVPEGLCRCVKLQ-KLKLD 347 (1255)
T ss_pred hhhccccchhc-cchHHHhhhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhccccc-cCchhhhhhHHHH-Hhccc
Confidence 55555555555 455555555555555555555442 24555555555555555555554 4555555555555 55555
Q ss_pred CCcccccccccccCCCCCceEeccCCe
Q 040195 434 HNLLNGSLLLQVGNLKNLILLDISGNQ 460 (472)
Q Consensus 434 ~n~l~~~~~~~l~~~~~L~~L~L~~n~ 460 (472)
.|++. .+|+++.-++.|+.||+.+|+
T Consensus 348 ~NrLi-TLPeaIHlL~~l~vLDlreNp 373 (1255)
T KOG0444|consen 348 HNRLI-TLPEAIHLLPDLKVLDLRENP 373 (1255)
T ss_pred cccee-echhhhhhcCCcceeeccCCc
Confidence 55554 455555555555555555554
No 6
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.97 E-value=3.3e-34 Score=253.38 Aligned_cols=405 Identities=27% Similarity=0.403 Sum_probs=269.7
Q ss_pred CceEEEECCCCccCcccCccccCCCCccEEeccCCcCccCcchhhhcCCCCCEEEccCcccCC-----------------
Q 040195 38 QRVTELDLSNQRIGGVLSPYVGNLSFLRYINLSDNGFHGEIPQEIGNLYRLEKLELSNNSFSG----------------- 100 (472)
Q Consensus 38 ~~l~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~----------------- 100 (472)
..+.+++++++..... +.+++.+..++.++.++|.+. ..|..+..+.+|..++++.|.+..
T Consensus 68 ~~l~vl~~~~n~l~~l-p~aig~l~~l~~l~vs~n~ls-~lp~~i~s~~~l~~l~~s~n~~~el~~~i~~~~~l~dl~~~ 145 (565)
T KOG0472|consen 68 ACLTVLNVHDNKLSQL-PAAIGELEALKSLNVSHNKLS-ELPEQIGSLISLVKLDCSSNELKELPDSIGRLLDLEDLDAT 145 (565)
T ss_pred cceeEEEeccchhhhC-CHHHHHHHHHHHhhcccchHh-hccHHHhhhhhhhhhhccccceeecCchHHHHhhhhhhhcc
Confidence 4567888888876443 334555555555666665554 445555555555555555555441
Q ss_pred -----CCCcccCCCCCCcEEEcccCcCcccCCccccCCCCCcEEEccccCCCCCCCccccCCCCccEEEecCCccccccc
Q 040195 101 -----TIPTNLSRCSELTHLRVANNKLEGQIPKEIGSLLKLQTLALYYNNLTGQLPDFVGNLSALQVIYIRGNSLGGKIP 175 (472)
Q Consensus 101 -----~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~i~~~~~~~l~~~~~L~~L~l~~~~~~~~~~ 175 (472)
..|..+..+.++..+++.+++++ ..|...-+++.|+++++.+|.+. .+|..++.+.+|+.|++..|++. ..|
T Consensus 146 ~N~i~slp~~~~~~~~l~~l~~~~n~l~-~l~~~~i~m~~L~~ld~~~N~L~-tlP~~lg~l~~L~~LyL~~Nki~-~lP 222 (565)
T KOG0472|consen 146 NNQISSLPEDMVNLSKLSKLDLEGNKLK-ALPENHIAMKRLKHLDCNSNLLE-TLPPELGGLESLELLYLRRNKIR-FLP 222 (565)
T ss_pred ccccccCchHHHHHHHHHHhhccccchh-hCCHHHHHHHHHHhcccchhhhh-cCChhhcchhhhHHHHhhhcccc-cCC
Confidence 33344444445555555555555 23333333677788887777775 77777888888888888888875 344
Q ss_pred cccccCCCccEEEccCCccccccccccccChhhhcCCCCccEEEcccccccccCCccCcCCCCCCEEecCCCcccccccc
Q 040195 176 TTLGLLRNLVYLNVNENQFWYVSSFSGSLPFDILVNLPNLKKLCIAENNFVGSIPDSLSNASNLELLELAGNQFEGKVSI 255 (472)
Q Consensus 176 ~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~ 255 (472)
.|..+..|+.+.++.|.+ ..+|.+....++++..|++..|+++ ..|..+.-+.+|++|++++|.++ ..+.
T Consensus 223 -ef~gcs~L~Elh~g~N~i-------~~lpae~~~~L~~l~vLDLRdNklk-e~Pde~clLrsL~rLDlSNN~is-~Lp~ 292 (565)
T KOG0472|consen 223 -EFPGCSLLKELHVGENQI-------EMLPAEHLKHLNSLLVLDLRDNKLK-EVPDEICLLRSLERLDLSNNDIS-SLPY 292 (565)
T ss_pred -CCCccHHHHHHHhcccHH-------HhhHHHHhcccccceeeeccccccc-cCchHHHHhhhhhhhcccCCccc-cCCc
Confidence 677788888888888876 6677777888999999999999998 56778888999999999999997 5667
Q ss_pred cccccCCCCeEEcCCCcCCCC--------CCCCcchhhhhcccCCCc--------------CCchhhhccccccEEEeec
Q 040195 256 DFSSLKNLAVLNLERNNLGIG--------TANDLGFVTFLTNCSSLK--------------LPHSIANLSSTMTHFYIGG 313 (472)
Q Consensus 256 ~l~~l~~L~~L~l~~~~~~~~--------~~~~~~~~~~~~~~~~l~--------------~~~~~~~~~~~l~~l~l~~ 313 (472)
.++++ .|+.|-+.+|++... ..+.+.+......+..+. .+..........+.|++++
T Consensus 293 sLgnl-hL~~L~leGNPlrTiRr~ii~~gT~~vLKyLrs~~~~dglS~se~~~e~~~t~~~~~~~~~~~~i~tkiL~~s~ 371 (565)
T KOG0472|consen 293 SLGNL-HLKFLALEGNPLRTIRREIISKGTQEVLKYLRSKIKDDGLSQSEGGTETAMTLPSESFPDIYAIITTKILDVSD 371 (565)
T ss_pred ccccc-eeeehhhcCCchHHHHHHHHcccHHHHHHHHHHhhccCCCCCCcccccccCCCCCCcccchhhhhhhhhhcccc
Confidence 78888 999999999986311 111111111111111111 0001111122455666666
Q ss_pred ccccCcccccccCc--cCcceEeccccccc-----------------------cCcchhhcCCCCCcEEEccCCcCcccc
Q 040195 314 NQILGIIHFGIRNL--VNLIALGMQSNQLH-----------------------GTIPDVIGELKNLQILSLFGNFLHGSI 368 (472)
Q Consensus 314 ~~~~~~~~~~l~~~--~~L~~L~l~~~~i~-----------------------~~~~~~~~~~~~L~~L~L~~n~l~~~~ 368 (472)
-.++.+....|..- .-+..++++.|++. +..|..+..+++|..|++++|.+- .+
T Consensus 372 ~qlt~VPdEVfea~~~~~Vt~VnfskNqL~elPk~L~~lkelvT~l~lsnn~isfv~~~l~~l~kLt~L~L~NN~Ln-~L 450 (565)
T KOG0472|consen 372 KQLTLVPDEVFEAAKSEIVTSVNFSKNQLCELPKRLVELKELVTDLVLSNNKISFVPLELSQLQKLTFLDLSNNLLN-DL 450 (565)
T ss_pred cccccCCHHHHHHhhhcceEEEecccchHhhhhhhhHHHHHHHHHHHhhcCccccchHHHHhhhcceeeecccchhh-hc
Confidence 66665544433322 12445555555543 244555667788888888888776 56
Q ss_pred ccchhcccccCeeeccCCcccccCCcCccCCCCCceEeecCCcccccCChhhhhhcccceEEEcCCCcccccccccccCC
Q 040195 369 PSSLGNLTKLANLELSSNSLQGNIPLSVGNCQNLIGFDASHITLTGALPQQLLSITTLSLYLDLSHNLLNGSLLLQVGNL 448 (472)
Q Consensus 369 ~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ls~~~~~~~~~~~l~~~~~l~~~L~ls~n~l~~~~~~~l~~~ 448 (472)
|..+..+-.|+.|+++.|.|. .+|........++.+-.++|++...-+..+.++.++. .||+.+|.+. .+|..+.++
T Consensus 451 P~e~~~lv~Lq~LnlS~NrFr-~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~-tLDL~nNdlq-~IPp~Lgnm 527 (565)
T KOG0472|consen 451 PEEMGSLVRLQTLNLSFNRFR-MLPECLYELQTLETLLASNNQIGSVDPSGLKNMRNLT-TLDLQNNDLQ-QIPPILGNM 527 (565)
T ss_pred chhhhhhhhhheecccccccc-cchHHHhhHHHHHHHHhccccccccChHHhhhhhhcc-eeccCCCchh-hCChhhccc
Confidence 777777777888888888777 6777777777788888888888733344588889998 9999999888 567788999
Q ss_pred CCCceEeccCCeec
Q 040195 449 KNLILLDISGNQFS 462 (472)
Q Consensus 449 ~~L~~L~L~~n~~~ 462 (472)
++|++|+++||+|.
T Consensus 528 tnL~hLeL~gNpfr 541 (565)
T KOG0472|consen 528 TNLRHLELDGNPFR 541 (565)
T ss_pred cceeEEEecCCccC
Confidence 99999999999986
No 7
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.96 E-value=1.7e-31 Score=248.76 Aligned_cols=341 Identities=24% Similarity=0.321 Sum_probs=252.9
Q ss_pred CceEEEECCCCccCcccCccccCCCCccEEeccCCcCccCcchhhhcCCCCCEEEccCcccCC-CCCcccCCCCCCcEEE
Q 040195 38 QRVTELDLSNQRIGGVLSPYVGNLSFLRYINLSDNGFHGEIPQEIGNLYRLEKLELSNNSFSG-TIPTNLSRCSELTHLR 116 (472)
Q Consensus 38 ~~l~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~-~~~~~l~~l~~L~~L~ 116 (472)
.+++.|.+....+ ...+..++.+.+|++|.+.+|++. .....+..++.|+.+.+..|++.. .+|..+..+..|.+|+
T Consensus 32 t~~~WLkLnrt~L-~~vPeEL~~lqkLEHLs~~HN~L~-~vhGELs~Lp~LRsv~~R~N~LKnsGiP~diF~l~dLt~lD 109 (1255)
T KOG0444|consen 32 TQMTWLKLNRTKL-EQVPEELSRLQKLEHLSMAHNQLI-SVHGELSDLPRLRSVIVRDNNLKNSGIPTDIFRLKDLTILD 109 (1255)
T ss_pred hheeEEEechhhh-hhChHHHHHHhhhhhhhhhhhhhH-hhhhhhccchhhHHHhhhccccccCCCCchhcccccceeee
Confidence 5678888888777 345678899999999999999988 455668899999999999998763 4677788999999999
Q ss_pred cccCcCcccCCccccCCCCCcEEEccccCCCCCCCccccCCCCccEEEecCCccccccccccccCCCccEEEccCCcccc
Q 040195 117 VANNKLEGQIPKEIGSLLKLQTLALYYNNLTGQLPDFVGNLSALQVIYIRGNSLGGKIPTTLGLLRNLVYLNVNENQFWY 196 (472)
Q Consensus 117 l~~~~~~~~~~~~l~~l~~L~~L~l~~~~i~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~ 196 (472)
+++|++. ..|..+..-+++-.|++++|.|..+.-..+.+++.|-.|++++|++. ..|..+..+..|++|.+++|++..
T Consensus 110 LShNqL~-EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~NrLe-~LPPQ~RRL~~LqtL~Ls~NPL~h 187 (1255)
T KOG0444|consen 110 LSHNQLR-EVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNNRLE-MLPPQIRRLSMLQTLKLSNNPLNH 187 (1255)
T ss_pred cchhhhh-hcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccchhh-hcCHHHHHHhhhhhhhcCCChhhH
Confidence 9999999 78999999999999999999998555556678999999999999997 678888999999999999998733
Q ss_pred ccccccccChhhhcCCCCccEEEcccccccc-cCCccCcCCCCCCEEecCCCcccccccccccccCCCCeEEcCCCcCCC
Q 040195 197 VSSFSGSLPFDILVNLPNLKKLCIAENNFVG-SIPDSLSNASNLELLELAGNQFEGKVSIDFSSLKNLAVLNLERNNLGI 275 (472)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~-~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~ 275 (472)
. ....+..+++|+.|.+++..-+- .+|..+..+.+|..++++.|.+. ..+..+..+++|+.|++++|.++.
T Consensus 188 f-------QLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp-~vPecly~l~~LrrLNLS~N~ite 259 (1255)
T KOG0444|consen 188 F-------QLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLP-IVPECLYKLRNLRRLNLSGNKITE 259 (1255)
T ss_pred H-------HHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCC-cchHHHhhhhhhheeccCcCceee
Confidence 3 22223355677788888765432 56777889999999999999987 667778899999999999998762
Q ss_pred CCCCCcchhhhhcccCCCcCCchhhhccccccEEEeecccccCcccccccCccCcceEecccccccc-CcchhhcCCCCC
Q 040195 276 GTANDLGFVTFLTNCSSLKLPHSIANLSSTMTHFYIGGNQILGIIHFGIRNLVNLIALGMQSNQLHG-TIPDVIGELKNL 354 (472)
Q Consensus 276 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~-~~~~~~~~~~~L 354 (472)
.... ...- .+++.|+++.|.++. +|..++++++|+.|...+|.+.- -+|..++++..|
T Consensus 260 L~~~-------------------~~~W-~~lEtLNlSrNQLt~-LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~L 318 (1255)
T KOG0444|consen 260 LNMT-------------------EGEW-ENLETLNLSRNQLTV-LPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQL 318 (1255)
T ss_pred eecc-------------------HHHH-hhhhhhccccchhcc-chHHHhhhHHHHHHHhccCcccccCCccchhhhhhh
Confidence 1110 0000 155666666666653 34456666666666666665542 245556666666
Q ss_pred cEEEccCCcCccccccchhcccccCeeeccCCcccccCCcCccCCCCCceEeecCCccc
Q 040195 355 QILSLFGNFLHGSIPSSLGNLTKLANLELSSNSLQGNIPLSVGNCQNLIGFDASHITLT 413 (472)
Q Consensus 355 ~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ls~~~~~ 413 (472)
+.+..++|.+. ..|+.++.|..|+.|.|+.|.+. .+|+++.-++.|+.|++..|+..
T Consensus 319 evf~aanN~LE-lVPEglcRC~kL~kL~L~~NrLi-TLPeaIHlL~~l~vLDlreNpnL 375 (1255)
T KOG0444|consen 319 EVFHAANNKLE-LVPEGLCRCVKLQKLKLDHNRLI-TLPEAIHLLPDLKVLDLRENPNL 375 (1255)
T ss_pred HHHHhhccccc-cCchhhhhhHHHHHhccccccee-echhhhhhcCCcceeeccCCcCc
Confidence 66666666665 56666666666666666666655 45666666666666666666554
No 8
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.95 E-value=9.5e-31 Score=231.61 Aligned_cols=381 Identities=27% Similarity=0.364 Sum_probs=281.0
Q ss_pred CceEEEECCCCccCcccCccccCCCCccEEeccCCcCccCcchhhhcCCCCCEEEccCcccCCCCCcccCCCCCCcEEEc
Q 040195 38 QRVTELDLSNQRIGGVLSPYVGNLSFLRYINLSDNGFHGEIPQEIGNLYRLEKLELSNNSFSGTIPTNLSRCSELTHLRV 117 (472)
Q Consensus 38 ~~l~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l 117 (472)
.++++++++.+.+.. .++.++.+..+..++-.+|.+. ..|.++.++.+|..+++.+|.+... |...-+++.|++++.
T Consensus 114 ~~l~~l~~s~n~~~e-l~~~i~~~~~l~dl~~~~N~i~-slp~~~~~~~~l~~l~~~~n~l~~l-~~~~i~m~~L~~ld~ 190 (565)
T KOG0472|consen 114 ISLVKLDCSSNELKE-LPDSIGRLLDLEDLDATNNQIS-SLPEDMVNLSKLSKLDLEGNKLKAL-PENHIAMKRLKHLDC 190 (565)
T ss_pred hhhhhhhccccceee-cCchHHHHhhhhhhhccccccc-cCchHHHHHHHHHHhhccccchhhC-CHHHHHHHHHHhccc
Confidence 556777777777743 4556777888888888888887 5677888889999999999999844 444445999999999
Q ss_pred ccCcCcccCCccccCCCCCcEEEccccCCCCCCCccccCCCCccEEEecCCccccccccccccCCCccEEEccCCccccc
Q 040195 118 ANNKLEGQIPKEIGSLLKLQTLALYYNNLTGQLPDFVGNLSALQVIYIRGNSLGGKIPTTLGLLRNLVYLNVNENQFWYV 197 (472)
Q Consensus 118 ~~~~~~~~~~~~l~~l~~L~~L~l~~~~i~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~ 197 (472)
..|-++ .+|..++.+.+|.-|++.+|++. ..| .|..+..|+++.++.|.+..........++++..||+.+|++..
T Consensus 191 ~~N~L~-tlP~~lg~l~~L~~LyL~~Nki~-~lP-ef~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRdNklke- 266 (565)
T KOG0472|consen 191 NSNLLE-TLPPELGGLESLELLYLRRNKIR-FLP-EFPGCSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRDNKLKE- 266 (565)
T ss_pred chhhhh-cCChhhcchhhhHHHHhhhcccc-cCC-CCCccHHHHHHHhcccHHHhhHHHHhcccccceeeecccccccc-
Confidence 999888 78999999999999999999998 667 78899999999999999874444455689999999999999844
Q ss_pred cccccccChhhhcCCCCccEEEcccccccccCCccCcCCCCCCEEecCCCccccccccccccc--CCCCeE-------Ec
Q 040195 198 SSFSGSLPFDILVNLPNLKKLCIAENNFVGSIPDSLSNASNLELLELAGNQFEGKVSIDFSSL--KNLAVL-------NL 268 (472)
Q Consensus 198 ~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l--~~L~~L-------~l 268 (472)
+|.+.. -+++|..|++++|.+++ .|..++++ .|+.|-+.+|++...-...+..- .-|++| .+
T Consensus 267 ------~Pde~c-lLrsL~rLDlSNN~is~-Lp~sLgnl-hL~~L~leGNPlrTiRr~ii~~gT~~vLKyLrs~~~~dgl 337 (565)
T KOG0472|consen 267 ------VPDEIC-LLRSLERLDLSNNDISS-LPYSLGNL-HLKFLALEGNPLRTIRREIISKGTQEVLKYLRSKIKDDGL 337 (565)
T ss_pred ------CchHHH-HhhhhhhhcccCCcccc-CCcccccc-eeeehhhcCCchHHHHHHHHcccHHHHHHHHHHhhccCCC
Confidence 443433 67889999999999984 67779999 99999999998753211111000 001111 11
Q ss_pred CCCc---CCCCCCCCcch--hhhhcccCCC--------cCCchhhhcc--ccccEEEeecccccC---------------
Q 040195 269 ERNN---LGIGTANDLGF--VTFLTNCSSL--------KLPHSIANLS--STMTHFYIGGNQILG--------------- 318 (472)
Q Consensus 269 ~~~~---~~~~~~~~~~~--~~~~~~~~~l--------~~~~~~~~~~--~~l~~l~l~~~~~~~--------------- 318 (472)
+... .+........+ ...+.+.+.+ .+|...++.. .-+..+++++|.+.+
T Consensus 338 S~se~~~e~~~t~~~~~~~~~~~~i~tkiL~~s~~qlt~VPdEVfea~~~~~Vt~VnfskNqL~elPk~L~~lkelvT~l 417 (565)
T KOG0472|consen 338 SQSEGGTETAMTLPSESFPDIYAIITTKILDVSDKQLTLVPDEVFEAAKSEIVTSVNFSKNQLCELPKRLVELKELVTDL 417 (565)
T ss_pred CCCcccccccCCCCCCcccchhhhhhhhhhcccccccccCCHHHHHHhhhcceEEEecccchHhhhhhhhHHHHHHHHHH
Confidence 1110 00000000000 0111111111 1333222221 124455555555432
Q ss_pred --------cccccccCccCcceEeccccccccCcchhhcCCCCCcEEEccCCcCccccccchhcccccCeeeccCCcccc
Q 040195 319 --------IIHFGIRNLVNLIALGMQSNQLHGTIPDVIGELKNLQILSLFGNFLHGSIPSSLGNLTKLANLELSSNSLQG 390 (472)
Q Consensus 319 --------~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~~~~~~ 390 (472)
..+..++.+++|..|++++|-+. .+|..++.+-.|+.|+++.|++. ..|+++..+..+|.+-.++|++..
T Consensus 418 ~lsnn~isfv~~~l~~l~kLt~L~L~NN~Ln-~LP~e~~~lv~Lq~LnlS~NrFr-~lP~~~y~lq~lEtllas~nqi~~ 495 (565)
T KOG0472|consen 418 VLSNNKISFVPLELSQLQKLTFLDLSNNLLN-DLPEEMGSLVRLQTLNLSFNRFR-MLPECLYELQTLETLLASNNQIGS 495 (565)
T ss_pred HhhcCccccchHHHHhhhcceeeecccchhh-hcchhhhhhhhhheecccccccc-cchHHHhhHHHHHHHHhccccccc
Confidence 24456677899999999999888 67777888889999999999998 899999999999999999999996
Q ss_pred cCCcCccCCCCCceEeecCCcccccCChhhhhhcccceEEEcCCCccc
Q 040195 391 NIPLSVGNCQNLIGFDASHITLTGALPQQLLSITTLSLYLDLSHNLLN 438 (472)
Q Consensus 391 ~~~~~~~~~~~L~~L~ls~~~~~~~~~~~l~~~~~l~~~L~ls~n~l~ 438 (472)
..+..+..+..|.+||+.+|.+. .+|..+++|++++ .|+++||.+.
T Consensus 496 vd~~~l~nm~nL~tLDL~nNdlq-~IPp~LgnmtnL~-hLeL~gNpfr 541 (565)
T KOG0472|consen 496 VDPSGLKNMRNLTTLDLQNNDLQ-QIPPILGNMTNLR-HLELDGNPFR 541 (565)
T ss_pred cChHHhhhhhhcceeccCCCchh-hCChhhcccccee-EEEecCCccC
Confidence 66666999999999999999999 8999999999999 9999999998
No 9
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.93 E-value=1.3e-28 Score=239.22 Aligned_cols=406 Identities=29% Similarity=0.351 Sum_probs=221.3
Q ss_pred ceEEEECCCCccCcccCccccCCCCccEEeccCCcCccCcchhhhcCCCCCEEEccCcccCCCCCcccCCCCCCcEEEcc
Q 040195 39 RVTELDLSNQRIGGVLSPYVGNLSFLRYINLSDNGFHGEIPQEIGNLYRLEKLELSNNSFSGTIPTNLSRCSELTHLRVA 118 (472)
Q Consensus 39 ~l~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~ 118 (472)
+++.||+++|.+ ...+..+..+.+|+.|+++.|.+. ..|....++.+|++++|.+|... ..|..+..+.+|+.|+++
T Consensus 46 ~L~~l~lsnn~~-~~fp~~it~l~~L~~ln~s~n~i~-~vp~s~~~~~~l~~lnL~~n~l~-~lP~~~~~lknl~~LdlS 122 (1081)
T KOG0618|consen 46 KLKSLDLSNNQI-SSFPIQITLLSHLRQLNLSRNYIR-SVPSSCSNMRNLQYLNLKNNRLQ-SLPASISELKNLQYLDLS 122 (1081)
T ss_pred eeEEeecccccc-ccCCchhhhHHHHhhcccchhhHh-hCchhhhhhhcchhheeccchhh-cCchhHHhhhcccccccc
Confidence 377777777766 334455667777777777777666 44566667777777777777665 566677777777777777
Q ss_pred cCcCcccCCccccCCCCC-------------------cEEEccccCCCCCCCccccCCCCccEEEecCCccccccccccc
Q 040195 119 NNKLEGQIPKEIGSLLKL-------------------QTLALYYNNLTGQLPDFVGNLSALQVIYIRGNSLGGKIPTTLG 179 (472)
Q Consensus 119 ~~~~~~~~~~~l~~l~~L-------------------~~L~l~~~~i~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~ 179 (472)
.|.+. ..|..+..+..+ +++++..+.+.+.++..+..+.. .+++.+|.+.. ..+.
T Consensus 123 ~N~f~-~~Pl~i~~lt~~~~~~~s~N~~~~~lg~~~ik~~~l~~n~l~~~~~~~i~~l~~--~ldLr~N~~~~---~dls 196 (1081)
T KOG0618|consen 123 FNHFG-PIPLVIEVLTAEEELAASNNEKIQRLGQTSIKKLDLRLNVLGGSFLIDIYNLTH--QLDLRYNEMEV---LDLS 196 (1081)
T ss_pred hhccC-CCchhHHhhhHHHHHhhhcchhhhhhccccchhhhhhhhhcccchhcchhhhhe--eeecccchhhh---hhhh
Confidence 77665 344333333333 33333333333333333333333 36666666541 1223
Q ss_pred cCCCccEEEccCCcccccc----------ccccccC-hhhhcCCCCccEEEcccccccccCCccCcCCCCCCEEecCCCc
Q 040195 180 LLRNLVYLNVNENQFWYVS----------SFSGSLP-FDILVNLPNLKKLCIAENNFVGSIPDSLSNASNLELLELAGNQ 248 (472)
Q Consensus 180 ~~~~L~~L~l~~~~l~~~~----------~~~~~~~-~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~ 248 (472)
.+.+|+.+....|.+..+. +....+. ........+|+.++++.+.+.. +|.++..+++|+.++..+|.
T Consensus 197 ~~~~l~~l~c~rn~ls~l~~~g~~l~~L~a~~n~l~~~~~~p~p~nl~~~dis~n~l~~-lp~wi~~~~nle~l~~n~N~ 275 (1081)
T KOG0618|consen 197 NLANLEVLHCERNQLSELEISGPSLTALYADHNPLTTLDVHPVPLNLQYLDISHNNLSN-LPEWIGACANLEALNANHNR 275 (1081)
T ss_pred hccchhhhhhhhcccceEEecCcchheeeeccCcceeeccccccccceeeecchhhhhc-chHHHHhcccceEecccchh
Confidence 3334444433333322111 0000000 0011123457777777777763 44777777777777777776
Q ss_pred cccc----------------------ccccccccCCCCeEEcCCCcCCCCCCCCcchhhh------hcccCCCcCCchhh
Q 040195 249 FEGK----------------------VSIDFSSLKNLAVLNLERNNLGIGTANDLGFVTF------LTNCSSLKLPHSIA 300 (472)
Q Consensus 249 ~~~~----------------------~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~------~~~~~~l~~~~~~~ 300 (472)
+... .+.-+..+++|++|++..|++.......+..+.. ....+.-..|..-.
T Consensus 276 l~~lp~ri~~~~~L~~l~~~~nel~yip~~le~~~sL~tLdL~~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e 355 (1081)
T KOG0618|consen 276 LVALPLRISRITSLVSLSAAYNELEYIPPFLEGLKSLRTLDLQSNNLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEE 355 (1081)
T ss_pred HHhhHHHHhhhhhHHHHHhhhhhhhhCCCcccccceeeeeeehhccccccchHHHhhhhHHHHHHhhhhccccccccccc
Confidence 6422 1122344667888888888776433211111111 00011111222222
Q ss_pred hccccccEEEeecccccCcccccccCccCcceEeccccccccCcchhhcCCCCCcEEEccCCcCccccccchhcccccCe
Q 040195 301 NLSSTMTHFYIGGNQILGIIHFGIRNLVNLIALGMQSNQLHGTIPDVIGELKNLQILSLFGNFLHGSIPSSLGNLTKLAN 380 (472)
Q Consensus 301 ~~~~~l~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~L~~ 380 (472)
...+.++.|++.+|.+++.....+.++++|+.|+|++|++.......+.++..|++|++++|+++ .+|..+..+..|++
T Consensus 356 ~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~-~Lp~tva~~~~L~t 434 (1081)
T KOG0618|consen 356 NNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLT-TLPDTVANLGRLHT 434 (1081)
T ss_pred hhhHHHHHHHHhcCcccccchhhhccccceeeeeecccccccCCHHHHhchHHhHHHhcccchhh-hhhHHHHhhhhhHH
Confidence 33345666666666666665556666666777777777666444445666666667777777666 55566666666777
Q ss_pred eeccCCcccccCCcCccCCCCCceEeecCCcccc-cCChhhhhhcccceEEEcCCCcccccccccccCCCCCceEeccCC
Q 040195 381 LELSSNSLQGNIPLSVGNCQNLIGFDASHITLTG-ALPQQLLSITTLSLYLDLSHNLLNGSLLLQVGNLKNLILLDISGN 459 (472)
Q Consensus 381 L~l~~~~~~~~~~~~~~~~~~L~~L~ls~~~~~~-~~~~~l~~~~~l~~~L~ls~n~l~~~~~~~l~~~~~L~~L~L~~n 459 (472)
|...+|.+. ..| .+..++.|+.+|+|.|++.. .++.. ...++|+ +||++||.-....-+.|..++++...+++-+
T Consensus 435 L~ahsN~l~-~fP-e~~~l~qL~~lDlS~N~L~~~~l~~~-~p~p~Lk-yLdlSGN~~l~~d~~~l~~l~~l~~~~i~~~ 510 (1081)
T KOG0618|consen 435 LRAHSNQLL-SFP-ELAQLPQLKVLDLSCNNLSEVTLPEA-LPSPNLK-YLDLSGNTRLVFDHKTLKVLKSLSQMDITLN 510 (1081)
T ss_pred HhhcCCcee-ech-hhhhcCcceEEecccchhhhhhhhhh-CCCcccc-eeeccCCcccccchhhhHHhhhhhheecccC
Confidence 766666666 455 56666667777777666652 12222 1125666 6777766433233455555566666655555
No 10
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.93 E-value=1.6e-24 Score=233.04 Aligned_cols=363 Identities=21% Similarity=0.288 Sum_probs=245.4
Q ss_pred CceEEEECCCCccC--cccCccccCCCCccEEeccCCcC------ccCcchhhhcCC-CCCEEEccCcccCCCCCcccCC
Q 040195 38 QRVTELDLSNQRIG--GVLSPYVGNLSFLRYINLSDNGF------HGEIPQEIGNLY-RLEKLELSNNSFSGTIPTNLSR 108 (472)
Q Consensus 38 ~~l~~L~l~~~~~~--~~~~~~l~~~~~L~~L~L~~~~~------~~~~~~~~~~l~-~L~~L~L~~~~~~~~~~~~l~~ 108 (472)
.+++.+.+....+. ......|.+|++|+.|.+..+.. ....|+.+..++ +|+.|.+.++.+. .+|..+ .
T Consensus 532 ~~v~~i~l~~~~~~~~~i~~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~-~lP~~f-~ 609 (1153)
T PLN03210 532 KKVLGITLDIDEIDELHIHENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLR-CMPSNF-R 609 (1153)
T ss_pred ceeeEEEeccCccceeeecHHHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCC-CCCCcC-C
Confidence 55666655544443 23446788999999999976532 223566677765 5999999999887 677777 5
Q ss_pred CCCCcEEEcccCcCcccCCccccCCCCCcEEEccccCCCCCCCccccCCCCccEEEecCCccccccccccccCCCccEEE
Q 040195 109 CSELTHLRVANNKLEGQIPKEIGSLLKLQTLALYYNNLTGQLPDFVGNLSALQVIYIRGNSLGGKIPTTLGLLRNLVYLN 188 (472)
Q Consensus 109 l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~i~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~ 188 (472)
..+|++|++.++.+. .++..+..+++|+.|+++++......|. ++.+++|++|++.+|......|..+..+++|+.|+
T Consensus 610 ~~~L~~L~L~~s~l~-~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~ 687 (1153)
T PLN03210 610 PENLVKLQMQGSKLE-KLWDGVHSLTGLRNIDLRGSKNLKEIPD-LSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLD 687 (1153)
T ss_pred ccCCcEEECcCcccc-ccccccccCCCCCEEECCCCCCcCcCCc-cccCCcccEEEecCCCCccccchhhhccCCCCEEe
Confidence 689999999999988 6778888999999999998764435554 77899999999999876667888899999999999
Q ss_pred ccCCccccccccccccChhhhcCCCCccEEEcccccccccCCccCcCCCCCCEEecCCCcccccccccccccCCCCeEEc
Q 040195 189 VNENQFWYVSSFSGSLPFDILVNLPNLKKLCIAENNFVGSIPDSLSNASNLELLELAGNQFEGKVSIDFSSLKNLAVLNL 268 (472)
Q Consensus 189 l~~~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l 268 (472)
+++|.. ...+|... .+++|+.|++++|.....+|.. .++|+.|++++|.+.. .+..+ .+++|++|.+
T Consensus 688 L~~c~~------L~~Lp~~i--~l~sL~~L~Lsgc~~L~~~p~~---~~nL~~L~L~~n~i~~-lP~~~-~l~~L~~L~l 754 (1153)
T PLN03210 688 MSRCEN------LEILPTGI--NLKSLYRLNLSGCSRLKSFPDI---STNISWLDLDETAIEE-FPSNL-RLENLDELIL 754 (1153)
T ss_pred CCCCCC------cCccCCcC--CCCCCCEEeCCCCCCccccccc---cCCcCeeecCCCcccc-ccccc-cccccccccc
Confidence 998741 13344332 6789999999999765555542 4678999999998763 33333 5788888888
Q ss_pred CCCcCCCCCCCCcchhhhhcccCCCcCCchhhhccccccEEEeecccccCcccccccCccCcceEeccccccccCcchhh
Q 040195 269 ERNNLGIGTANDLGFVTFLTNCSSLKLPHSIANLSSTMTHFYIGGNQILGIIHFGIRNLVNLIALGMQSNQLHGTIPDVI 348 (472)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~ 348 (472)
.++...... ..+ ..++......+++|+.|++++|......+..+.++++|+.|+|++|...+.+|...
T Consensus 755 ~~~~~~~l~-------~~~-----~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~ 822 (1153)
T PLN03210 755 CEMKSEKLW-------ERV-----QPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI 822 (1153)
T ss_pred cccchhhcc-------ccc-----cccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC
Confidence 765432100 000 00111112233467777777766555556666677777777777764433455443
Q ss_pred cCCCCCcEEEccCCcCccccccchhcccccCeeeccCCcccccCCcCccCCCCCceEeecCCcccccCChhhhhhcccce
Q 040195 349 GELKNLQILSLFGNFLHGSIPSSLGNLTKLANLELSSNSLQGNIPLSVGNCQNLIGFDASHITLTGALPQQLLSITTLSL 428 (472)
Q Consensus 349 ~~~~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ls~~~~~~~~~~~l~~~~~l~~ 428 (472)
.+++|++|++++|.....+|.. .++|++|++++|.++ .+|.++..+++|+.|++++|+....+|..+..++.++
T Consensus 823 -~L~sL~~L~Ls~c~~L~~~p~~---~~nL~~L~Ls~n~i~-~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~- 896 (1153)
T PLN03210 823 -NLESLESLDLSGCSRLRTFPDI---STNISDLNLSRTGIE-EVPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLE- 896 (1153)
T ss_pred -CccccCEEECCCCCcccccccc---ccccCEeECCCCCCc-cChHHHhcCCCCCEEECCCCCCcCccCcccccccCCC-
Confidence 5667777777776543333332 356777777777666 5666666677777777777654445666666666666
Q ss_pred EEEcCCC
Q 040195 429 YLDLSHN 435 (472)
Q Consensus 429 ~L~ls~n 435 (472)
.+++++|
T Consensus 897 ~L~l~~C 903 (1153)
T PLN03210 897 TVDFSDC 903 (1153)
T ss_pred eeecCCC
Confidence 6677666
No 11
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.91 E-value=6.5e-27 Score=227.57 Aligned_cols=373 Identities=28% Similarity=0.320 Sum_probs=229.1
Q ss_pred CceEEEECCCCccCcccCccccCCCCccEEeccCCcCccCcchhhhcCCCCCEEEccCcccCCCCCcccCCCCCCcEEEc
Q 040195 38 QRVTELDLSNQRIGGVLSPYVGNLSFLRYINLSDNGFHGEIPQEIGNLYRLEKLELSNNSFSGTIPTNLSRCSELTHLRV 117 (472)
Q Consensus 38 ~~l~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l 117 (472)
..++.|+++.|.+..-+..++++.-+|+.|++++|.+. ..|..+..+++|+.|+++.|.+. ..|....++.+|+++.+
T Consensus 21 ~~~~~ln~~~N~~l~~pl~~~~~~v~L~~l~lsnn~~~-~fp~~it~l~~L~~ln~s~n~i~-~vp~s~~~~~~l~~lnL 98 (1081)
T KOG0618|consen 21 EALQILNLRRNSLLSRPLEFVEKRVKLKSLDLSNNQIS-SFPIQITLLSHLRQLNLSRNYIR-SVPSSCSNMRNLQYLNL 98 (1081)
T ss_pred HHHHhhhccccccccCchHHhhheeeeEEeeccccccc-cCCchhhhHHHHhhcccchhhHh-hCchhhhhhhcchhhee
Confidence 34778888888776655666777777999999988877 67788888899999999988887 66777888899999999
Q ss_pred ccCcCcccCCccccCCCCCcEEEccccCCCCCCCccccCCCCccEEEecCCccccccccccccCCCccEEEccCCccccc
Q 040195 118 ANNKLEGQIPKEIGSLLKLQTLALYYNNLTGQLPDFVGNLSALQVIYIRGNSLGGKIPTTLGLLRNLVYLNVNENQFWYV 197 (472)
Q Consensus 118 ~~~~~~~~~~~~l~~l~~L~~L~l~~~~i~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~ 197 (472)
..+.+. ..|..+..+++|+.|+++.|.+. ..|..+..+..++.+..++|... ..++... ++++++..+.+.
T Consensus 99 ~~n~l~-~lP~~~~~lknl~~LdlS~N~f~-~~Pl~i~~lt~~~~~~~s~N~~~----~~lg~~~-ik~~~l~~n~l~-- 169 (1081)
T KOG0618|consen 99 KNNRLQ-SLPASISELKNLQYLDLSFNHFG-PIPLVIEVLTAEEELAASNNEKI----QRLGQTS-IKKLDLRLNVLG-- 169 (1081)
T ss_pred ccchhh-cCchhHHhhhcccccccchhccC-CCchhHHhhhHHHHHhhhcchhh----hhhcccc-chhhhhhhhhcc--
Confidence 888887 78888888899999999988887 77777878888888888887221 1222222 666666666531
Q ss_pred cccccccChhhhcCCCCcc-EEEcccccccccCCccCcCCCCCCEEecCCCcccccccccccccCCCCeEEcCCCcCCCC
Q 040195 198 SSFSGSLPFDILVNLPNLK-KLCIAENNFVGSIPDSLSNASNLELLELAGNQFEGKVSIDFSSLKNLAVLNLERNNLGIG 276 (472)
Q Consensus 198 ~~~~~~~~~~~~~~~~~L~-~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~ 276 (472)
+.++. ..-.++ .|++.+|.+.. ..+..+++|+.+....|++.... -..++++.|+...|.+...
T Consensus 170 ----~~~~~----~i~~l~~~ldLr~N~~~~---~dls~~~~l~~l~c~rn~ls~l~----~~g~~l~~L~a~~n~l~~~ 234 (1081)
T KOG0618|consen 170 ----GSFLI----DIYNLTHQLDLRYNEMEV---LDLSNLANLEVLHCERNQLSELE----ISGPSLTALYADHNPLTTL 234 (1081)
T ss_pred ----cchhc----chhhhheeeecccchhhh---hhhhhccchhhhhhhhcccceEE----ecCcchheeeeccCcceee
Confidence 22222 222334 48999988762 23567888999998888775211 2457889999999887621
Q ss_pred CCCCcchhhhhcccCCCcCCchhhhccccccEEEeecccccCcccccccCccCcceEecccccccc--------------
Q 040195 277 TANDLGFVTFLTNCSSLKLPHSIANLSSTMTHFYIGGNQILGIIHFGIRNLVNLIALGMQSNQLHG-------------- 342 (472)
Q Consensus 277 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~-------------- 342 (472)
.. ...+.+++.++++.+.++... .++..+.+|+.++..+|.+..
T Consensus 235 ~~---------------------~p~p~nl~~~dis~n~l~~lp-~wi~~~~nle~l~~n~N~l~~lp~ri~~~~~L~~l 292 (1081)
T KOG0618|consen 235 DV---------------------HPVPLNLQYLDISHNNLSNLP-EWIGACANLEALNANHNRLVALPLRISRITSLVSL 292 (1081)
T ss_pred cc---------------------ccccccceeeecchhhhhcch-HHHHhcccceEecccchhHHhhHHHHhhhhhHHHH
Confidence 11 111225666666666666554 566666666666666666541
Q ss_pred --------CcchhhcCCCCCcEEEccCCcCccccccch-h-------------------------cccccCeeeccCCcc
Q 040195 343 --------TIPDVIGELKNLQILSLFGNFLHGSIPSSL-G-------------------------NLTKLANLELSSNSL 388 (472)
Q Consensus 343 --------~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l-~-------------------------~~~~L~~L~l~~~~~ 388 (472)
-+|......++|++|+|..|++. .+|+.+ . .++.|+.|.+.+|.+
T Consensus 293 ~~~~nel~yip~~le~~~sL~tLdL~~N~L~-~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~L 371 (1081)
T KOG0618|consen 293 SAAYNELEYIPPFLEGLKSLRTLDLQSNNLP-SLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHL 371 (1081)
T ss_pred HhhhhhhhhCCCcccccceeeeeeehhcccc-ccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcc
Confidence 22333344555666666665554 222211 0 112234444444444
Q ss_pred cccCCcCccCCCCCceEeecCCcccccCC-hhhhhhcccceEEEcCCCcccccccccccCCCCCceEeccCCeec
Q 040195 389 QGNIPLSVGNCQNLIGFDASHITLTGALP-QQLLSITTLSLYLDLSHNLLNGSLLLQVGNLKNLILLDISGNQFS 462 (472)
Q Consensus 389 ~~~~~~~~~~~~~L~~L~ls~~~~~~~~~-~~l~~~~~l~~~L~ls~n~l~~~~~~~l~~~~~L~~L~L~~n~~~ 462 (472)
++..-..+..++.||.|++++|++. ++| ..+.++..|+ .|+||||+++ .+|..+..+..|++|...+|.+.
T Consensus 372 td~c~p~l~~~~hLKVLhLsyNrL~-~fpas~~~kle~Le-eL~LSGNkL~-~Lp~tva~~~~L~tL~ahsN~l~ 443 (1081)
T KOG0618|consen 372 TDSCFPVLVNFKHLKVLHLSYNRLN-SFPASKLRKLEELE-ELNLSGNKLT-TLPDTVANLGRLHTLRAHSNQLL 443 (1081)
T ss_pred cccchhhhccccceeeeeecccccc-cCCHHHHhchHHhH-HHhcccchhh-hhhHHHHhhhhhHHHhhcCCcee
Confidence 4333333444445555555555444 222 2334444444 4555555554 33444444555555554444443
No 12
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.89 E-value=1.1e-21 Score=211.39 Aligned_cols=342 Identities=20% Similarity=0.247 Sum_probs=250.5
Q ss_pred CcchhhhcCCCCCEEEccCccc------CCCCCcccCCC-CCCcEEEcccCcCcccCCccccCCCCCcEEEccccCCCCC
Q 040195 77 EIPQEIGNLYRLEKLELSNNSF------SGTIPTNLSRC-SELTHLRVANNKLEGQIPKEIGSLLKLQTLALYYNNLTGQ 149 (472)
Q Consensus 77 ~~~~~~~~l~~L~~L~L~~~~~------~~~~~~~l~~l-~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~i~~~ 149 (472)
..+.+|.++++|+.|.+..+.. ....|..+..+ ++|+.|.+.++++. .+|..+ ...+|+.|++.++.+. .
T Consensus 549 i~~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~-~lP~~f-~~~~L~~L~L~~s~l~-~ 625 (1153)
T PLN03210 549 IHENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLR-CMPSNF-RPENLVKLQMQGSKLE-K 625 (1153)
T ss_pred ecHHHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCC-CCCCcC-CccCCcEEECcCcccc-c
Confidence 4456788899999998865432 22345555554 46999999998887 667666 4689999999998887 5
Q ss_pred CCccccCCCCccEEEecCCccccccccccccCCCccEEEccCCccccccccccccChhhhcCCCCccEEEcccccccccC
Q 040195 150 LPDFVGNLSALQVIYIRGNSLGGKIPTTLGLLRNLVYLNVNENQFWYVSSFSGSLPFDILVNLPNLKKLCIAENNFVGSI 229 (472)
Q Consensus 150 ~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~ 229 (472)
++..+..+++|+.++++++......+ .+..+++|+.|++++|.. ...+| ..+..+++|+.|++++|.....+
T Consensus 626 L~~~~~~l~~Lk~L~Ls~~~~l~~ip-~ls~l~~Le~L~L~~c~~------L~~lp-~si~~L~~L~~L~L~~c~~L~~L 697 (1153)
T PLN03210 626 LWDGVHSLTGLRNIDLRGSKNLKEIP-DLSMATNLETLKLSDCSS------LVELP-SSIQYLNKLEDLDMSRCENLEIL 697 (1153)
T ss_pred cccccccCCCCCEEECCCCCCcCcCC-ccccCCcccEEEecCCCC------ccccc-hhhhccCCCCEEeCCCCCCcCcc
Confidence 66777788999999998875443444 477889999999988752 12333 23567889999999988655555
Q ss_pred CccCcCCCCCCEEecCCCcccccccccccccCCCCeEEcCCCcCCCCCCCCcchhhhhcccCCCcCCchhhhccccccEE
Q 040195 230 PDSLSNASNLELLELAGNQFEGKVSIDFSSLKNLAVLNLERNNLGIGTANDLGFVTFLTNCSSLKLPHSIANLSSTMTHF 309 (472)
Q Consensus 230 ~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~l 309 (472)
|..+ ++++|+.|++++|......+. ...+|+.|+++++.+.. +|..+ ..++++.|
T Consensus 698 p~~i-~l~sL~~L~Lsgc~~L~~~p~---~~~nL~~L~L~~n~i~~-------------------lP~~~--~l~~L~~L 752 (1153)
T PLN03210 698 PTGI-NLKSLYRLNLSGCSRLKSFPD---ISTNISWLDLDETAIEE-------------------FPSNL--RLENLDEL 752 (1153)
T ss_pred CCcC-CCCCCCEEeCCCCCCcccccc---ccCCcCeeecCCCcccc-------------------ccccc--cccccccc
Confidence 5544 688999999998854333332 24678899998887652 22111 11256666
Q ss_pred Eeeccccc-------CcccccccCccCcceEeccccccccCcchhhcCCCCCcEEEccCCcCccccccchhcccccCeee
Q 040195 310 YIGGNQIL-------GIIHFGIRNLVNLIALGMQSNQLHGTIPDVIGELKNLQILSLFGNFLHGSIPSSLGNLTKLANLE 382 (472)
Q Consensus 310 ~l~~~~~~-------~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~ 382 (472)
.+.++... ...+......++|+.|++++|.....+|..++++++|+.|++++|...+.+|..+ .+++|+.|+
T Consensus 753 ~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~ 831 (1153)
T PLN03210 753 ILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-NLESLESLD 831 (1153)
T ss_pred cccccchhhccccccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC-CccccCEEE
Confidence 66553321 1111223345789999999998777889999999999999999987555677665 689999999
Q ss_pred ccCCcccccCCcCccCCCCCceEeecCCcccccCChhhhhhcccceEEEcCCC-cccccccccccCCCCCceEeccCCee
Q 040195 383 LSSNSLQGNIPLSVGNCQNLIGFDASHITLTGALPQQLLSITTLSLYLDLSHN-LLNGSLLLQVGNLKNLILLDISGNQF 461 (472)
Q Consensus 383 l~~~~~~~~~~~~~~~~~~L~~L~ls~~~~~~~~~~~l~~~~~l~~~L~ls~n-~l~~~~~~~l~~~~~L~~L~L~~n~~ 461 (472)
+++|.....+|. ...+|+.|++++|.+. .+|..+..+++|+ .|++++| ++. .++..+..+++|+.+++++|.-
T Consensus 832 Ls~c~~L~~~p~---~~~nL~~L~Ls~n~i~-~iP~si~~l~~L~-~L~L~~C~~L~-~l~~~~~~L~~L~~L~l~~C~~ 905 (1153)
T PLN03210 832 LSGCSRLRTFPD---ISTNISDLNLSRTGIE-EVPWWIEKFSNLS-FLDMNGCNNLQ-RVSLNISKLKHLETVDFSDCGA 905 (1153)
T ss_pred CCCCCccccccc---cccccCEeECCCCCCc-cChHHHhcCCCCC-EEECCCCCCcC-ccCcccccccCCCeeecCCCcc
Confidence 999976645543 3478999999999998 7899999999999 9999996 555 5677788899999999999973
No 13
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.85 E-value=1.3e-23 Score=186.22 Aligned_cols=387 Identities=19% Similarity=0.188 Sum_probs=213.4
Q ss_pred CceEEEECCCCccCcccCccccCCCCccEEeccCCcCccCcchhhhcCCCCCEEEccC-cccCCCCCcccCCCCCCcEEE
Q 040195 38 QRVTELDLSNQRIGGVLSPYVGNLSFLRYINLSDNGFHGEIPQEIGNLYRLEKLELSN-NSFSGTIPTNLSRCSELTHLR 116 (472)
Q Consensus 38 ~~l~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~-~~~~~~~~~~l~~l~~L~~L~ 116 (472)
+....+++..|.|+.+++..|+.+++||+|+|++|.+..+.|++|..+++|..|-+.+ |+|++.....|.++..++.|.
T Consensus 67 ~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLl 146 (498)
T KOG4237|consen 67 PETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLL 146 (498)
T ss_pred CcceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHh
Confidence 4556788888888888888888888888888888888888888888888887776666 777755556677888888888
Q ss_pred cccCcCcccCCccccCCCCCcEEEccccCCCCCCCccccCCCCccEEEecCCccc-c-----------ccccccccCCCc
Q 040195 117 VANNKLEGQIPKEIGSLLKLQTLALYYNNLTGQLPDFVGNLSALQVIYIRGNSLG-G-----------KIPTTLGLLRNL 184 (472)
Q Consensus 117 l~~~~~~~~~~~~l~~l~~L~~L~l~~~~i~~~~~~~l~~~~~L~~L~l~~~~~~-~-----------~~~~~l~~~~~L 184 (472)
+.-|++.-...+.|..++++..|.+.+|.+..+....+..+..++++.+..|.+. . ..+..++.....
T Consensus 147 lNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsgarc~ 226 (498)
T KOG4237|consen 147 LNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGARCV 226 (498)
T ss_pred cChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccchhhhHHhhchhhcccceec
Confidence 8777776556667788888888888888776443446666777777766665521 0 011111111111
Q ss_pred cEEEccCCccccccccccccChhhhcCCCCccEE---EcccccccccCC-ccCcCCCCCCEEecCCCccccccccccccc
Q 040195 185 VYLNVNENQFWYVSSFSGSLPFDILVNLPNLKKL---CIAENNFVGSIP-DSLSNASNLELLELAGNQFEGKVSIDFSSL 260 (472)
Q Consensus 185 ~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~L~~L---~l~~~~l~~~~~-~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l 260 (472)
....+.+.++.. +....+.. .++++ ..+.+......| ..|..+++|++|++++|.++.....+|.+.
T Consensus 227 ~p~rl~~~Ri~q-------~~a~kf~c--~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~ 297 (498)
T KOG4237|consen 227 SPYRLYYKRINQ-------EDARKFLC--SLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGA 297 (498)
T ss_pred chHHHHHHHhcc-------cchhhhhh--hHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcch
Confidence 111122222111 11111100 01111 111111111111 235556666666666666665555566666
Q ss_pred CCCCeEEcCCCcCCCCCCCCcchhhhhcccCCCcCCchhhhccccccEEEeecccccCcccccccCccCcceEecccccc
Q 040195 261 KNLAVLNLERNNLGIGTANDLGFVTFLTNCSSLKLPHSIANLSSTMTHFYIGGNQILGIIHFGIRNLVNLIALGMQSNQL 340 (472)
Q Consensus 261 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~i 340 (472)
..++.|.+..|++.. +...++.....|+.|++.+|.|+.+.+..|....+|.+|++-.|.+
T Consensus 298 a~l~eL~L~~N~l~~-------------------v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~ 358 (498)
T KOG4237|consen 298 AELQELYLTRNKLEF-------------------VSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPF 358 (498)
T ss_pred hhhhhhhcCcchHHH-------------------HHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCcc
Confidence 666666666655531 1122222333556666666666666666666666666666655433
Q ss_pred cc-----Ccchhh-----------cCCCCCcEEEccCCcCccc---ccc---------chhcccccCeeeccCCcccccC
Q 040195 341 HG-----TIPDVI-----------GELKNLQILSLFGNFLHGS---IPS---------SLGNLTKLANLELSSNSLQGNI 392 (472)
Q Consensus 341 ~~-----~~~~~~-----------~~~~~L~~L~L~~n~l~~~---~~~---------~l~~~~~L~~L~l~~~~~~~~~ 392 (472)
.- -..+|+ ++...++.+.++...+.+. .++ +-..++-+.+..=-.|+....+
T Consensus 359 ~CnC~l~wl~~Wlr~~~~~~~~~Cq~p~~~~~~~~~dv~~~~~~c~~~ee~~~~~s~~cP~~c~c~~tVvRcSnk~lk~l 438 (498)
T KOG4237|consen 359 NCNCRLAWLGEWLRKKSVVGNPRCQSPGFVRQIPISDVAFGDFRCGGPEELGCLTSSPCPPPCTCLDTVVRCSNKLLKLL 438 (498)
T ss_pred cCccchHHHHHHHhhCCCCCCCCCCCCchhccccchhccccccccCCccccCCCCCCCCCCCcchhhhhHhhcccchhhc
Confidence 10 000111 1123455566655544321 111 1122333333222222222233
Q ss_pred CcCccCCCCCceEeecCCcccccCChhhhhhcccceEEEcCCCcccccccccccCCCCCceEeccCC
Q 040195 393 PLSVGNCQNLIGFDASHITLTGALPQQLLSITTLSLYLDLSHNLLNGSLLLQVGNLKNLILLDISGN 459 (472)
Q Consensus 393 ~~~~~~~~~L~~L~ls~~~~~~~~~~~l~~~~~l~~~L~ls~n~l~~~~~~~l~~~~~L~~L~L~~n 459 (472)
|..+ ...-.++.+.+|.++ .+|.. ....++ +++++|++...--..|++++.|.+|-|+.|
T Consensus 439 p~~i--P~d~telyl~gn~~~-~vp~~--~~~~l~--~dls~n~i~~Lsn~tf~n~tql~tlilsyn 498 (498)
T KOG4237|consen 439 PRGI--PVDVTELYLDGNAIT-SVPDE--LLRSLL--LDLSNNRISSLSNYTFSNMTQLSTLILSYN 498 (498)
T ss_pred CCCC--CchhHHHhcccchhc-ccCHH--HHhhhh--cccccCceehhhcccccchhhhheeEEecC
Confidence 3221 234467778888887 67765 344443 888888887544567788888888888765
No 14
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.83 E-value=8.4e-20 Score=183.30 Aligned_cols=114 Identities=27% Similarity=0.362 Sum_probs=56.7
Q ss_pred CCcEEEcccCcCcccCCccccCCCCCcEEEccccCCCCCCCccccCCCCccEEEecCCccccccccccccCCCccEEEcc
Q 040195 111 ELTHLRVANNKLEGQIPKEIGSLLKLQTLALYYNNLTGQLPDFVGNLSALQVIYIRGNSLGGKIPTTLGLLRNLVYLNVN 190 (472)
Q Consensus 111 ~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~i~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~ 190 (472)
.-..|+++.+.++ .+|..+. ++|+.|++.+|.++ .+|. ..++|++|++++|.++. +|. ..++|+.|+++
T Consensus 202 ~~~~LdLs~~~Lt-sLP~~l~--~~L~~L~L~~N~Lt-~LP~---lp~~Lk~LdLs~N~Lts-LP~---lp~sL~~L~Ls 270 (788)
T PRK15387 202 GNAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLT-SLPA---LPPELRTLEVSGNQLTS-LPV---LPPGLLELSIF 270 (788)
T ss_pred CCcEEEcCCCCCC-cCCcchh--cCCCEEEccCCcCC-CCCC---CCCCCcEEEecCCccCc-ccC---cccccceeecc
Confidence 3445666666665 4454443 35666666666665 3333 23556666666665552 232 13455566666
Q ss_pred CCccccccccccccChhhhcCCCCccEEEcccccccccCCccCcCCCCCCEEecCCCccc
Q 040195 191 ENQFWYVSSFSGSLPFDILVNLPNLKKLCIAENNFVGSIPDSLSNASNLELLELAGNQFE 250 (472)
Q Consensus 191 ~~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~ 250 (472)
+|.+..+.. ..++|+.|++++|.++. +|. .+++|+.|++++|.+.
T Consensus 271 ~N~L~~Lp~-----------lp~~L~~L~Ls~N~Lt~-LP~---~p~~L~~LdLS~N~L~ 315 (788)
T PRK15387 271 SNPLTHLPA-----------LPSGLCKLWIFGNQLTS-LPV---LPPGLQELSVSDNQLA 315 (788)
T ss_pred CCchhhhhh-----------chhhcCEEECcCCcccc-ccc---cccccceeECCCCccc
Confidence 655432211 11345555565555553 222 1345555555555554
No 15
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.82 E-value=5.1e-22 Score=176.20 Aligned_cols=361 Identities=21% Similarity=0.235 Sum_probs=197.5
Q ss_pred CCEEEccCcccCCCCCcccCCCCCCcEEEcccCcCcccCCccccCCCCCcEEEccc-cCCCCCCCccccCCCCccEEEec
Q 040195 88 LEKLELSNNSFSGTIPTNLSRCSELTHLRVANNKLEGQIPKEIGSLLKLQTLALYY-NNLTGQLPDFVGNLSALQVIYIR 166 (472)
Q Consensus 88 L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~-~~i~~~~~~~l~~~~~L~~L~l~ 166 (472)
-.++.|..|.|+.+.+..|+.+++|+.|++++|.|+.+.|++|..++++.+|.+.+ |+|++.....|.++..++.|.+.
T Consensus 69 tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLllN 148 (498)
T KOG4237|consen 69 TVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLLN 148 (498)
T ss_pred ceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhcC
Confidence 34555555555555555555555666666666555555555555555555555544 55554444555555555555555
Q ss_pred CCccccccccccccCCCccEEEccCCccccccccccccChhhhcCCCCccEEEcccccccccCCccCcCCCCCCEEecCC
Q 040195 167 GNSLGGKIPTTLGLLRNLVYLNVNENQFWYVSSFSGSLPFDILVNLPNLKKLCIAENNFVGSIPDSLSNASNLELLELAG 246 (472)
Q Consensus 167 ~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~ 246 (472)
-|.+.......|..++++..|.+.+|.+..+ +...+.....++.+.+..+.+.. ..+++.+....
T Consensus 149 an~i~Cir~~al~dL~~l~lLslyDn~~q~i-------~~~tf~~l~~i~tlhlA~np~ic-----dCnL~wla~~~--- 213 (498)
T KOG4237|consen 149 ANHINCIRQDALRDLPSLSLLSLYDNKIQSI-------CKGTFQGLAAIKTLHLAQNPFIC-----DCNLPWLADDL--- 213 (498)
T ss_pred hhhhcchhHHHHHHhhhcchhcccchhhhhh-------ccccccchhccchHhhhcCcccc-----ccccchhhhHH---
Confidence 5555544444555555555555555544222 22223344444444444443210 11111111100
Q ss_pred CcccccccccccccCCCCeEEcCCCcCCCCCCCCcc-----hhh-hhccc-CCCcCCchhhhccccccEEEeecccccCc
Q 040195 247 NQFEGKVSIDFSSLKNLAVLNLERNNLGIGTANDLG-----FVT-FLTNC-SSLKLPHSIANLSSTMTHFYIGGNQILGI 319 (472)
Q Consensus 247 ~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~-----~~~-~~~~~-~~l~~~~~~~~~~~~l~~l~l~~~~~~~~ 319 (472)
...+..++......-..+.+.++.......+. ++. ....+ .....|..-+...++|+++++++|.++.+
T Consensus 214 ----a~~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i 289 (498)
T KOG4237|consen 214 ----AMNPIETSGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRI 289 (498)
T ss_pred ----hhchhhcccceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchh
Confidence 00111111221122222222222211111000 000 00111 11123333344445899999999999999
Q ss_pred ccccccCccCcceEeccccccccCcchhhcCCCCCcEEEccCCcCccccccchhcccccCeeeccCCccccc--C-----
Q 040195 320 IHFGIRNLVNLIALGMQSNQLHGTIPDVIGELKNLQILSLFGNFLHGSIPSSLGNLTKLANLELSSNSLQGN--I----- 392 (472)
Q Consensus 320 ~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~~~~~~~--~----- 392 (472)
.+.+|.....+++|.|..|.+......+|..+..|+.|+|++|+|+...|.+|..+..|.+|++-.|++--. +
T Consensus 290 ~~~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~~CnC~l~wl~~ 369 (498)
T KOG4237|consen 290 EDGAFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPFNCNCRLAWLGE 369 (498)
T ss_pred hhhhhcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCcccCccchHHHHH
Confidence 999999999999999999998876667888899999999999999988888999999999999988876510 0
Q ss_pred ---------CcCccCCCCCceEeecCCcccc---cCCh------------------hhhhhccc------------ceEE
Q 040195 393 ---------PLSVGNCQNLIGFDASHITLTG---ALPQ------------------QLLSITTL------------SLYL 430 (472)
Q Consensus 393 ---------~~~~~~~~~L~~L~ls~~~~~~---~~~~------------------~l~~~~~l------------~~~L 430 (472)
...=+....++.+.++...+.+ ..|+ .+..|++. ..++
T Consensus 370 Wlr~~~~~~~~~Cq~p~~~~~~~~~dv~~~~~~c~~~ee~~~~~s~~cP~~c~c~~tVvRcSnk~lk~lp~~iP~d~tel 449 (498)
T KOG4237|consen 370 WLRKKSVVGNPRCQSPGFVRQIPISDVAFGDFRCGGPEELGCLTSSPCPPPCTCLDTVVRCSNKLLKLLPRGIPVDVTEL 449 (498)
T ss_pred HHhhCCCCCCCCCCCCchhccccchhccccccccCCccccCCCCCCCCCCCcchhhhhHhhcccchhhcCCCCCchhHHH
Confidence 0001122356666666554421 1111 12222221 1168
Q ss_pred EcCCCcccccccccccCCCCCceEeccCCeeccccCCcccc
Q 040195 431 DLSHNLLNGSLLLQVGNLKNLILLDISGNQFSGVIPVTLSI 471 (472)
Q Consensus 431 ~ls~n~l~~~~~~~l~~~~~L~~L~L~~n~~~~~~p~~~~~ 471 (472)
++.+|+++ .+|.. .+.+| .+|+++|+++.---.+|+|
T Consensus 450 yl~gn~~~-~vp~~--~~~~l-~~dls~n~i~~Lsn~tf~n 486 (498)
T KOG4237|consen 450 YLDGNAIT-SVPDE--LLRSL-LLDLSNNRISSLSNYTFSN 486 (498)
T ss_pred hcccchhc-ccCHH--HHhhh-hcccccCceehhhcccccc
Confidence 88999998 44544 66788 9999999998655555554
No 16
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.81 E-value=6e-19 Score=177.19 Aligned_cols=265 Identities=25% Similarity=0.310 Sum_probs=155.4
Q ss_pred CCCCEEEccCcccCCCCCcccCCCCCCcEEEcccCcCcccCCccccCCCCCcEEEccccCCCCCCCccccCCCCccEEEe
Q 040195 86 YRLEKLELSNNSFSGTIPTNLSRCSELTHLRVANNKLEGQIPKEIGSLLKLQTLALYYNNLTGQLPDFVGNLSALQVIYI 165 (472)
Q Consensus 86 ~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~i~~~~~~~l~~~~~L~~L~l 165 (472)
..-..|+++.+.++ .+|..+. ++|+.|.+.+|+++ .+|. ..++|++|++++|.++ .+|.. .++|+.|++
T Consensus 201 ~~~~~LdLs~~~Lt-sLP~~l~--~~L~~L~L~~N~Lt-~LP~---lp~~Lk~LdLs~N~Lt-sLP~l---p~sL~~L~L 269 (788)
T PRK15387 201 NGNAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLT-SLPA---LPPELRTLEVSGNQLT-SLPVL---PPGLLELSI 269 (788)
T ss_pred CCCcEEEcCCCCCC-cCCcchh--cCCCEEEccCCcCC-CCCC---CCCCCcEEEecCCccC-cccCc---ccccceeec
Confidence 34567888888776 5565554 47888888888877 3443 2477888888888777 34432 357788888
Q ss_pred cCCccccccccccccCCCccEEEccCCccccccccccccChhhhcCCCCccEEEcccccccccCCccCcCCCCCCEEecC
Q 040195 166 RGNSLGGKIPTTLGLLRNLVYLNVNENQFWYVSSFSGSLPFDILVNLPNLKKLCIAENNFVGSIPDSLSNASNLELLELA 245 (472)
Q Consensus 166 ~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~ 245 (472)
.+|.++ .++.. .++|+.|++++|.+..+ |. ..++|+.|++++|.+.+. |.. ..+|+.|.++
T Consensus 270 s~N~L~-~Lp~l---p~~L~~L~Ls~N~Lt~L-------P~----~p~~L~~LdLS~N~L~~L-p~l---p~~L~~L~Ls 330 (788)
T PRK15387 270 FSNPLT-HLPAL---PSGLCKLWIFGNQLTSL-------PV----LPPGLQELSVSDNQLASL-PAL---PSELCKLWAY 330 (788)
T ss_pred cCCchh-hhhhc---hhhcCEEECcCCccccc-------cc----cccccceeECCCCccccC-CCC---cccccccccc
Confidence 888776 23332 25677788888876433 21 236788888888877743 321 2457777777
Q ss_pred CCcccccccccccccCCCCeEEcCCCcCCCCCCCCcchhhhhcccCCCcCCchhhhccccccEEEeecccccCccccccc
Q 040195 246 GNQFEGKVSIDFSSLKNLAVLNLERNNLGIGTANDLGFVTFLTNCSSLKLPHSIANLSSTMTHFYIGGNQILGIIHFGIR 325 (472)
Q Consensus 246 ~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~l~ 325 (472)
+|.++.. +. ...+|+.|++++|++.. +|. .+++++.|++++|.+..+..
T Consensus 331 ~N~L~~L-P~---lp~~Lq~LdLS~N~Ls~-------------------LP~----lp~~L~~L~Ls~N~L~~LP~---- 379 (788)
T PRK15387 331 NNQLTSL-PT---LPSGLQELSVSDNQLAS-------------------LPT----LPSELYKLWAYNNRLTSLPA---- 379 (788)
T ss_pred cCccccc-cc---cccccceEecCCCccCC-------------------CCC----CCcccceehhhccccccCcc----
Confidence 7777632 21 12467777777777652 111 11245566666666554321
Q ss_pred CccCcceEeccccccccCcchhhcCCCCCcEEEccCCcCccccccchhcccccCeeeccCCcccccCCcCccCCCCCceE
Q 040195 326 NLVNLIALGMQSNQLHGTIPDVIGELKNLQILSLFGNFLHGSIPSSLGNLTKLANLELSSNSLQGNIPLSVGNCQNLIGF 405 (472)
Q Consensus 326 ~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L 405 (472)
...+|+.|++++|.+.. +|.. .++|+.|++++|.+. .+|.. ..+|+.|++++|+++ .+|..+..+++|+.|
T Consensus 380 l~~~L~~LdLs~N~Lt~-LP~l---~s~L~~LdLS~N~Ls-sIP~l---~~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~L 450 (788)
T PRK15387 380 LPSGLKELIVSGNRLTS-LPVL---PSELKELMVSGNRLT-SLPML---PSGLLSLSVYRNQLT-RLPESLIHLSSETTV 450 (788)
T ss_pred cccccceEEecCCcccC-CCCc---ccCCCEEEccCCcCC-CCCcc---hhhhhhhhhccCccc-ccChHHhhccCCCeE
Confidence 12356666666666652 3321 245666666666655 23332 234555666666665 455555556666666
Q ss_pred eecCCcccccCChhh
Q 040195 406 DASHITLTGALPQQL 420 (472)
Q Consensus 406 ~ls~~~~~~~~~~~l 420 (472)
++++|++++..+..+
T Consensus 451 dLs~N~Ls~~~~~~L 465 (788)
T PRK15387 451 NLEGNPLSERTLQAL 465 (788)
T ss_pred ECCCCCCCchHHHHH
Confidence 666666655444444
No 17
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.74 E-value=1.7e-19 Score=169.52 Aligned_cols=287 Identities=22% Similarity=0.249 Sum_probs=149.4
Q ss_pred EEEccccCCC-CCCCccccCCCCccEEEecCCccccc----cccccccCCCccEEEccCCccccccccccccChhhhcCC
Q 040195 138 TLALYYNNLT-GQLPDFVGNLSALQVIYIRGNSLGGK----IPTTLGLLRNLVYLNVNENQFWYVSSFSGSLPFDILVNL 212 (472)
Q Consensus 138 ~L~l~~~~i~-~~~~~~l~~~~~L~~L~l~~~~~~~~----~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~ 212 (472)
+|++..+.++ ......+..++.|+.+.+.++.++.. ++..+...+.+++++++++.+........ .....+..+
T Consensus 2 ~l~L~~~~l~~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~-~~~~~l~~~ 80 (319)
T cd00116 2 QLSLKGELLKTERATELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQ-SLLQGLTKG 80 (319)
T ss_pred ccccccCcccccchHHHHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHH-HHHHHHHhc
Confidence 3555555554 23344445566677777777776432 22334455667777777665421000000 001223334
Q ss_pred CCccEEEcccccccccCCccCcCCCCCCEEecCCCcccccccccccccCCCCeEEcCCCcCCCCCCCCcchhhhhcccCC
Q 040195 213 PNLKKLCIAENNFVGSIPDSLSNASNLELLELAGNQFEGKVSIDFSSLKNLAVLNLERNNLGIGTANDLGFVTFLTNCSS 292 (472)
Q Consensus 213 ~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~ 292 (472)
++|++|++++|.+....+..+..+.+ . ++|++|++++|.++..+...
T Consensus 81 ~~L~~L~l~~~~~~~~~~~~~~~l~~--------------------~-~~L~~L~ls~~~~~~~~~~~------------ 127 (319)
T cd00116 81 CGLQELDLSDNALGPDGCGVLESLLR--------------------S-SSLQELKLNNNGLGDRGLRL------------ 127 (319)
T ss_pred CceeEEEccCCCCChhHHHHHHHHhc--------------------c-CcccEEEeeCCccchHHHHH------------
Confidence 45555555555443222222221111 0 22455555444443110000
Q ss_pred CcCCchhhhccccccEEEeecccccCc----ccccccCccCcceEeccccccccC----cchhhcCCCCCcEEEccCCcC
Q 040195 293 LKLPHSIANLSSTMTHFYIGGNQILGI----IHFGIRNLVNLIALGMQSNQLHGT----IPDVIGELKNLQILSLFGNFL 364 (472)
Q Consensus 293 l~~~~~~~~~~~~l~~l~l~~~~~~~~----~~~~l~~~~~L~~L~l~~~~i~~~----~~~~~~~~~~L~~L~L~~n~l 364 (472)
+...+....++++.+++++|.++.. ....+..+++|++|++++|.+.+. ++..+..+++|++|++++|.+
T Consensus 128 --l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i 205 (319)
T cd00116 128 --LAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGL 205 (319)
T ss_pred --HHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCcc
Confidence 0001111112455555555554421 222445556777777777777642 223344556888888888877
Q ss_pred ccc----cccchhcccccCeeeccCCcccccCCcCcc-----CCCCCceEeecCCcccc----cCChhhhhhcccceEEE
Q 040195 365 HGS----IPSSLGNLTKLANLELSSNSLQGNIPLSVG-----NCQNLIGFDASHITLTG----ALPQQLLSITTLSLYLD 431 (472)
Q Consensus 365 ~~~----~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~-----~~~~L~~L~ls~~~~~~----~~~~~l~~~~~l~~~L~ 431 (472)
.+. +...+..+++|++|++++|++++.....+. ..+.|+.|++++|.+++ .+...+..++.++ +++
T Consensus 206 ~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~-~l~ 284 (319)
T cd00116 206 TDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLL-ELD 284 (319)
T ss_pred ChHHHHHHHHHhcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCcc-EEE
Confidence 533 233455677788888888877642221111 23688888888887752 2334455556777 888
Q ss_pred cCCCccccc----ccccccCC-CCCceEeccCCee
Q 040195 432 LSHNLLNGS----LLLQVGNL-KNLILLDISGNQF 461 (472)
Q Consensus 432 ls~n~l~~~----~~~~l~~~-~~L~~L~L~~n~~ 461 (472)
+++|.+++. ....+... +.|+++++.+|++
T Consensus 285 l~~N~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (319)
T cd00116 285 LRGNKFGEEGAQLLAESLLEPGNELESLWVKDDSF 319 (319)
T ss_pred CCCCCCcHHHHHHHHHHHhhcCCchhhcccCCCCC
Confidence 888888754 33444444 6788888887764
No 18
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.71 E-value=6.3e-17 Score=163.75 Aligned_cols=245 Identities=23% Similarity=0.355 Sum_probs=128.0
Q ss_pred CcEEEcccCcCcccCCccccCCCCCcEEEccccCCCCCCCccccCCCCccEEEecCCccccccccccccCCCccEEEccC
Q 040195 112 LTHLRVANNKLEGQIPKEIGSLLKLQTLALYYNNLTGQLPDFVGNLSALQVIYIRGNSLGGKIPTTLGLLRNLVYLNVNE 191 (472)
Q Consensus 112 L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~i~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~ 191 (472)
...|+++++.++ .+|..+. ++|+.|++++|.++ .+|..+. .+|++|++++|.++ .+|..+. ++|+.|++++
T Consensus 180 ~~~L~L~~~~Lt-sLP~~Ip--~~L~~L~Ls~N~Lt-sLP~~l~--~nL~~L~Ls~N~Lt-sLP~~l~--~~L~~L~Ls~ 250 (754)
T PRK15370 180 KTELRLKILGLT-TIPACIP--EQITTLILDNNELK-SLPENLQ--GNIKTLYANSNQLT-SIPATLP--DTIQEMELSI 250 (754)
T ss_pred ceEEEeCCCCcC-cCCcccc--cCCcEEEecCCCCC-cCChhhc--cCCCEEECCCCccc-cCChhhh--ccccEEECcC
Confidence 445555555554 2333322 34555555555555 3333222 35555555555554 2333221 3455666666
Q ss_pred CccccccccccccChhhhcCCCCccEEEcccccccccCCccCcCCCCCCEEecCCCcccccccccccccCCCCeEEcCCC
Q 040195 192 NQFWYVSSFSGSLPFDILVNLPNLKKLCIAENNFVGSIPDSLSNASNLELLELAGNQFEGKVSIDFSSLKNLAVLNLERN 271 (472)
Q Consensus 192 ~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~ 271 (472)
|.+..+ |... ..+|+.|++++|.++. +|..+ .++|+.|++++|.++.. +..+ .++|+.|++++|
T Consensus 251 N~L~~L-------P~~l---~s~L~~L~Ls~N~L~~-LP~~l--~~sL~~L~Ls~N~Lt~L-P~~l--p~sL~~L~Ls~N 314 (754)
T PRK15370 251 NRITEL-------PERL---PSALQSLDLFHNKISC-LPENL--PEELRYLSVYDNSIRTL-PAHL--PSGITHLNVQSN 314 (754)
T ss_pred CccCcC-------ChhH---hCCCCEEECcCCccCc-ccccc--CCCCcEEECCCCccccC-cccc--hhhHHHHHhcCC
Confidence 555222 2211 1345666666665553 33333 23566666666665532 2211 134566666666
Q ss_pred cCCCCCCCCcchhhhhcccCCCcCCchhhhccccccEEEeecccccCcccccccCccCcceEeccccccccCcchhhcCC
Q 040195 272 NLGIGTANDLGFVTFLTNCSSLKLPHSIANLSSTMTHFYIGGNQILGIIHFGIRNLVNLIALGMQSNQLHGTIPDVIGEL 351 (472)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~ 351 (472)
.+.. +|.. .+++|+.|++++|.++.+. ..+ .++|+.|++++|.+. .+|..+ .
T Consensus 315 ~Lt~-------------------LP~~---l~~sL~~L~Ls~N~Lt~LP-~~l--~~sL~~L~Ls~N~L~-~LP~~l--p 366 (754)
T PRK15370 315 SLTA-------------------LPET---LPPGLKTLEAGENALTSLP-ASL--PPELQVLDVSKNQIT-VLPETL--P 366 (754)
T ss_pred cccc-------------------CCcc---ccccceeccccCCccccCC-hhh--cCcccEEECCCCCCC-cCChhh--c
Confidence 5541 1110 1125666666666665432 222 256777777777776 444443 2
Q ss_pred CCCcEEEccCCcCccccccchhcccccCeeeccCCcccccCCcCc----cCCCCCceEeecCCccc
Q 040195 352 KNLQILSLFGNFLHGSIPSSLGNLTKLANLELSSNSLQGNIPLSV----GNCQNLIGFDASHITLT 413 (472)
Q Consensus 352 ~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~----~~~~~L~~L~ls~~~~~ 413 (472)
++|+.|++++|.+. .+|..+. ..|+.|++++|++. .+|..+ ..++.+..+++.+|++.
T Consensus 367 ~~L~~LdLs~N~Lt-~LP~~l~--~sL~~LdLs~N~L~-~LP~sl~~~~~~~~~l~~L~L~~Npls 428 (754)
T PRK15370 367 PTITTLDVSRNALT-NLPENLP--AALQIMQASRNNLV-RLPESLPHFRGEGPQPTRIIVEYNPFS 428 (754)
T ss_pred CCcCEEECCCCcCC-CCCHhHH--HHHHHHhhccCCcc-cCchhHHHHhhcCCCccEEEeeCCCcc
Confidence 57777777777776 4454433 35777777777776 444433 33466777777777776
No 19
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.71 E-value=9.2e-19 Score=164.51 Aligned_cols=81 Identities=20% Similarity=0.223 Sum_probs=41.0
Q ss_pred EeccCCcCcc-CcchhhhcCCCCCEEEccCcccCCC----CCcccCCCCCCcEEEcccCcCcc------cCCccccCCCC
Q 040195 67 INLSDNGFHG-EIPQEIGNLYRLEKLELSNNSFSGT----IPTNLSRCSELTHLRVANNKLEG------QIPKEIGSLLK 135 (472)
Q Consensus 67 L~L~~~~~~~-~~~~~~~~l~~L~~L~L~~~~~~~~----~~~~l~~l~~L~~L~l~~~~~~~------~~~~~l~~l~~ 135 (472)
|+|.++.+.+ .....+..+.+|++++++++.+... .+..+...+.+++++++++.+.. ..+..+..+++
T Consensus 3 l~L~~~~l~~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~ 82 (319)
T cd00116 3 LSLKGELLKTERATELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCG 82 (319)
T ss_pred cccccCcccccchHHHHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCc
Confidence 5555555542 3334455666677777777765421 23334455566666666655431 11123334445
Q ss_pred CcEEEccccCCC
Q 040195 136 LQTLALYYNNLT 147 (472)
Q Consensus 136 L~~L~l~~~~i~ 147 (472)
|+.|+++++.+.
T Consensus 83 L~~L~l~~~~~~ 94 (319)
T cd00116 83 LQELDLSDNALG 94 (319)
T ss_pred eeEEEccCCCCC
Confidence 555555444443
No 20
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.71 E-value=8.1e-17 Score=162.93 Aligned_cols=247 Identities=23% Similarity=0.368 Sum_probs=169.3
Q ss_pred CCCcEEEccccCCCCCCCccccCCCCccEEEecCCccccccccccccCCCccEEEccCCccccccccccccChhhhcCCC
Q 040195 134 LKLQTLALYYNNLTGQLPDFVGNLSALQVIYIRGNSLGGKIPTTLGLLRNLVYLNVNENQFWYVSSFSGSLPFDILVNLP 213 (472)
Q Consensus 134 ~~L~~L~l~~~~i~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~ 213 (472)
.+...|+++++.++ .+|..+. +.|+.|++++|.++ .++..+. ++|+.|++++|.+..+ |... .+
T Consensus 178 ~~~~~L~L~~~~Lt-sLP~~Ip--~~L~~L~Ls~N~Lt-sLP~~l~--~nL~~L~Ls~N~LtsL-------P~~l---~~ 241 (754)
T PRK15370 178 NNKTELRLKILGLT-TIPACIP--EQITTLILDNNELK-SLPENLQ--GNIKTLYANSNQLTSI-------PATL---PD 241 (754)
T ss_pred cCceEEEeCCCCcC-cCCcccc--cCCcEEEecCCCCC-cCChhhc--cCCCEEECCCCccccC-------Chhh---hc
Confidence 45678899888887 5665443 57899999999888 4555443 5899999999987433 3222 24
Q ss_pred CccEEEcccccccccCCccCcCCCCCCEEecCCCcccccccccccccCCCCeEEcCCCcCCCCCCCCcchhhhhcccCCC
Q 040195 214 NLKKLCIAENNFVGSIPDSLSNASNLELLELAGNQFEGKVSIDFSSLKNLAVLNLERNNLGIGTANDLGFVTFLTNCSSL 293 (472)
Q Consensus 214 ~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l 293 (472)
+|+.|++++|.+. .+|..+ .++|+.|++++|.+.. .+..+. ++|+.|++++|++..
T Consensus 242 ~L~~L~Ls~N~L~-~LP~~l--~s~L~~L~Ls~N~L~~-LP~~l~--~sL~~L~Ls~N~Lt~------------------ 297 (754)
T PRK15370 242 TIQEMELSINRIT-ELPERL--PSALQSLDLFHNKISC-LPENLP--EELRYLSVYDNSIRT------------------ 297 (754)
T ss_pred cccEEECcCCccC-cCChhH--hCCCCEEECcCCccCc-cccccC--CCCcEEECCCCcccc------------------
Confidence 7899999999887 445444 3578999999998873 344332 578999999987752
Q ss_pred cCCchhhhccccccEEEeecccccCcccccccCccCcceEeccccccccCcchhhcCCCCCcEEEccCCcCccccccchh
Q 040195 294 KLPHSIANLSSTMTHFYIGGNQILGIIHFGIRNLVNLIALGMQSNQLHGTIPDVIGELKNLQILSLFGNFLHGSIPSSLG 373 (472)
Q Consensus 294 ~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~ 373 (472)
+|.. .+++++.|++++|.++.+.. .+ .++|+.|++++|.+.. +|..+ .++|+.|++++|++. .+|..+
T Consensus 298 -LP~~---lp~sL~~L~Ls~N~Lt~LP~-~l--~~sL~~L~Ls~N~Lt~-LP~~l--~~sL~~L~Ls~N~L~-~LP~~l- 365 (754)
T PRK15370 298 -LPAH---LPSGITHLNVQSNSLTALPE-TL--PPGLKTLEAGENALTS-LPASL--PPELQVLDVSKNQIT-VLPETL- 365 (754)
T ss_pred -Cccc---chhhHHHHHhcCCccccCCc-cc--cccceeccccCCcccc-CChhh--cCcccEEECCCCCCC-cCChhh-
Confidence 1111 12367778888887775432 22 2678888888888774 45444 268888888888876 455544
Q ss_pred cccccCeeeccCCcccccCCcCccCCCCCceEeecCCcccccCChhhhhh----cccceEEEcCCCccc
Q 040195 374 NLTKLANLELSSNSLQGNIPLSVGNCQNLIGFDASHITLTGALPQQLLSI----TTLSLYLDLSHNLLN 438 (472)
Q Consensus 374 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ls~~~~~~~~~~~l~~~----~~l~~~L~ls~n~l~ 438 (472)
.+.|+.|++++|+++ .+|..+. .+|+.|++++|++. .+|..+.++ +.+. .+++.+|++.
T Consensus 366 -p~~L~~LdLs~N~Lt-~LP~~l~--~sL~~LdLs~N~L~-~LP~sl~~~~~~~~~l~-~L~L~~Npls 428 (754)
T PRK15370 366 -PPTITTLDVSRNALT-NLPENLP--AALQIMQASRNNLV-RLPESLPHFRGEGPQPT-RIIVEYNPFS 428 (754)
T ss_pred -cCCcCEEECCCCcCC-CCCHhHH--HHHHHHhhccCCcc-cCchhHHHHhhcCCCcc-EEEeeCCCcc
Confidence 367888888888877 4555443 36888888888887 566555443 5556 7888888776
No 21
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.57 E-value=5e-17 Score=128.36 Aligned_cols=160 Identities=29% Similarity=0.413 Sum_probs=144.2
Q ss_pred cccEEEeecccccCcccccccCccCcceEeccccccccCcchhhcCCCCCcEEEccCCcCccccccchhcccccCeeecc
Q 040195 305 TMTHFYIGGNQILGIIHFGIRNLVNLIALGMQSNQLHGTIPDVIGELKNLQILSLFGNFLHGSIPSSLGNLTKLANLELS 384 (472)
Q Consensus 305 ~l~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~ 384 (472)
.++.|.++.+.++.+ +..+..+.+|+.|++++|++. ..|..+..++.|+.|++.-|++. ..|..|+.+|.|+.|++.
T Consensus 34 ~ITrLtLSHNKl~~v-ppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~levldlt 110 (264)
T KOG0617|consen 34 NITRLTLSHNKLTVV-PPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPALEVLDLT 110 (264)
T ss_pred hhhhhhcccCceeec-CCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCCCchhhhhhcc
Confidence 677888899988865 446888999999999999998 77778899999999999999988 899999999999999999
Q ss_pred CCcccc-cCCcCccCCCCCceEeecCCcccccCChhhhhhcccceEEEcCCCcccccccccccCCCCCceEeccCCeecc
Q 040195 385 SNSLQG-NIPLSVGNCQNLIGFDASHITLTGALPQQLLSITTLSLYLDLSHNLLNGSLLLQVGNLKNLILLDISGNQFSG 463 (472)
Q Consensus 385 ~~~~~~-~~~~~~~~~~~L~~L~ls~~~~~~~~~~~l~~~~~l~~~L~ls~n~l~~~~~~~l~~~~~L~~L~L~~n~~~~ 463 (472)
.|++.+ .+|..|..+..|+.|.++.|.+. .+|..+.++++++ .|.+.+|.+. .+|..+..++.|++|.+.+|.++
T Consensus 111 ynnl~e~~lpgnff~m~tlralyl~dndfe-~lp~dvg~lt~lq-il~lrdndll-~lpkeig~lt~lrelhiqgnrl~- 186 (264)
T KOG0617|consen 111 YNNLNENSLPGNFFYMTTLRALYLGDNDFE-ILPPDVGKLTNLQ-ILSLRDNDLL-SLPKEIGDLTRLRELHIQGNRLT- 186 (264)
T ss_pred ccccccccCCcchhHHHHHHHHHhcCCCcc-cCChhhhhhccee-EEeeccCchh-hCcHHHHHHHHHHHHhcccceee-
Confidence 999874 47888999999999999999998 7899999999999 9999999888 68999999999999999999997
Q ss_pred ccCCcccc
Q 040195 464 VIPVTLSI 471 (472)
Q Consensus 464 ~~p~~~~~ 471 (472)
.+|..+++
T Consensus 187 vlppel~~ 194 (264)
T KOG0617|consen 187 VLPPELAN 194 (264)
T ss_pred ecChhhhh
Confidence 77777765
No 22
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.54 E-value=1.5e-16 Score=125.68 Aligned_cols=157 Identities=34% Similarity=0.548 Sum_probs=125.9
Q ss_pred ccCCCCccEEeccCCcCccCcchhhhcCCCCCEEEccCcccCCCCCcccCCCCCCcEEEcccCcCcccCCccccCCCCCc
Q 040195 58 VGNLSFLRYINLSDNGFHGEIPQEIGNLYRLEKLELSNNSFSGTIPTNLSRCSELTHLRVANNKLEGQIPKEIGSLLKLQ 137 (472)
Q Consensus 58 l~~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~ 137 (472)
+..+.++..|.+++|.++ ..|..++.+.+|+.|++++|++. .+|..++.+++|++|+++-|.+. ..|.+|+.+|.|+
T Consensus 29 Lf~~s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~le 105 (264)
T KOG0617|consen 29 LFNMSNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPALE 105 (264)
T ss_pred ccchhhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCCCchhh
Confidence 445677888999999988 56667899999999999999988 78888999999999999998887 8899999999999
Q ss_pred EEEccccCCCC-CCCccccCCCCccEEEecCCccccccccccccCCCccEEEccCCccccccccccccChhhhcCCCCcc
Q 040195 138 TLALYYNNLTG-QLPDFVGNLSALQVIYIRGNSLGGKIPTTLGLLRNLVYLNVNENQFWYVSSFSGSLPFDILVNLPNLK 216 (472)
Q Consensus 138 ~L~l~~~~i~~-~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~L~ 216 (472)
.|++..|.+.+ .+|..|..++.|+.|+++.|.+. ..|..++++.+|+.|.+.+|++- ++|.+ ++.+..|+
T Consensus 106 vldltynnl~e~~lpgnff~m~tlralyl~dndfe-~lp~dvg~lt~lqil~lrdndll-------~lpke-ig~lt~lr 176 (264)
T KOG0617|consen 106 VLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFE-ILPPDVGKLTNLQILSLRDNDLL-------SLPKE-IGDLTRLR 176 (264)
T ss_pred hhhccccccccccCCcchhHHHHHHHHHhcCCCcc-cCChhhhhhcceeEEeeccCchh-------hCcHH-HHHHHHHH
Confidence 99998887763 46777777888999999999886 67888888889998888888762 22322 23456667
Q ss_pred EEEccccccc
Q 040195 217 KLCIAENNFV 226 (472)
Q Consensus 217 ~L~l~~~~l~ 226 (472)
+|.+.+|+++
T Consensus 177 elhiqgnrl~ 186 (264)
T KOG0617|consen 177 ELHIQGNRLT 186 (264)
T ss_pred HHhcccceee
Confidence 7777777666
No 23
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.28 E-value=2e-13 Score=120.32 Aligned_cols=210 Identities=22% Similarity=0.277 Sum_probs=114.9
Q ss_pred CccccCCCCccEEeccCCcCccC----cchhhhcCCCCCEEEccCcc---cCCCCCc-------ccCCCCCCcEEEcccC
Q 040195 55 SPYVGNLSFLRYINLSDNGFHGE----IPQEIGNLYRLEKLELSNNS---FSGTIPT-------NLSRCSELTHLRVANN 120 (472)
Q Consensus 55 ~~~l~~~~~L~~L~L~~~~~~~~----~~~~~~~l~~L~~L~L~~~~---~~~~~~~-------~l~~l~~L~~L~l~~~ 120 (472)
...+..+..++.++|++|.+... +...+++.++|+..++++-- .....|. .+..+++|+++++|+|
T Consensus 23 ~~~~~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDN 102 (382)
T KOG1909|consen 23 EEELEPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDN 102 (382)
T ss_pred HHHhcccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeecccc
Confidence 34456677888888888877643 33445667788888877531 1112222 2234455556666555
Q ss_pred cCcccCCcc----ccCCCCCcEEEccccCCCCCCCccccCCCCccEEEecCCccccccccccccCCCccEEEccCCcccc
Q 040195 121 KLEGQIPKE----IGSLLKLQTLALYYNNLTGQLPDFVGNLSALQVIYIRGNSLGGKIPTTLGLLRNLVYLNVNENQFWY 196 (472)
Q Consensus 121 ~~~~~~~~~----l~~l~~L~~L~l~~~~i~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~ 196 (472)
.+....+.. +.++..|++|.+.+|.+.......++. -|.++ ....-...-++|+++...+|++.+
T Consensus 103 A~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~--al~~l---------~~~kk~~~~~~Lrv~i~~rNrlen 171 (382)
T KOG1909|consen 103 AFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGR--ALFEL---------AVNKKAASKPKLRVFICGRNRLEN 171 (382)
T ss_pred ccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHH--HHHHH---------HHHhccCCCcceEEEEeecccccc
Confidence 554333322 233445555555555443211111110 00000 011122345677777777777755
Q ss_pred ccccccccChhhhcCCCCccEEEcccccccc----cCCccCcCCCCCCEEecCCCcccccccc----cccccCCCCeEEc
Q 040195 197 VSSFSGSLPFDILVNLPNLKKLCIAENNFVG----SIPDSLSNASNLELLELAGNQFEGKVSI----DFSSLKNLAVLNL 268 (472)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~----~~~~~l~~~~~L~~L~l~~~~~~~~~~~----~l~~l~~L~~L~l 268 (472)
.+. ......++..+.|+.+.++.|.+.. .....|..+++|+.|+|.+|-++..... .++.+++|+.+++
T Consensus 172 ~ga---~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l 248 (382)
T KOG1909|consen 172 GGA---TALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNL 248 (382)
T ss_pred ccH---HHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecc
Confidence 542 2233456666777777777776643 1234467788888888888877644332 3555677777777
Q ss_pred CCCcCCCCCC
Q 040195 269 ERNNLGIGTA 278 (472)
Q Consensus 269 ~~~~~~~~~~ 278 (472)
+.|.+...+.
T Consensus 249 ~dcll~~~Ga 258 (382)
T KOG1909|consen 249 GDCLLENEGA 258 (382)
T ss_pred cccccccccH
Confidence 7777765443
No 24
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.25 E-value=7.6e-13 Score=116.78 Aligned_cols=235 Identities=26% Similarity=0.347 Sum_probs=173.0
Q ss_pred CCceEEEECCCCccCcc----cCccccCCCCccEEeccCCc---CccCcc-------hhhhcCCCCCEEEccCcccCCCC
Q 040195 37 HQRVTELDLSNQRIGGV----LSPYVGNLSFLRYINLSDNG---FHGEIP-------QEIGNLYRLEKLELSNNSFSGTI 102 (472)
Q Consensus 37 ~~~l~~L~l~~~~~~~~----~~~~l~~~~~L~~L~L~~~~---~~~~~~-------~~~~~l~~L~~L~L~~~~~~~~~ 102 (472)
...+..+++++|.+... ..+.+.+.++|+..+++.-. ..+..| +++..+++|++|+||+|.+....
T Consensus 29 ~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G~~g 108 (382)
T KOG1909|consen 29 MDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFGPKG 108 (382)
T ss_pred cCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccCccc
Confidence 36789999999999754 44556778899999998632 222333 34567889999999999887554
Q ss_pred Ccc----cCCCCCCcEEEcccCcCcccCCc-------------cccCCCCCcEEEccccCCCCCCC----ccccCCCCcc
Q 040195 103 PTN----LSRCSELTHLRVANNKLEGQIPK-------------EIGSLLKLQTLALYYNNLTGQLP----DFVGNLSALQ 161 (472)
Q Consensus 103 ~~~----l~~l~~L~~L~l~~~~~~~~~~~-------------~l~~l~~L~~L~l~~~~i~~~~~----~~l~~~~~L~ 161 (472)
+.. +..+..|++|.+.+|.+...... ....-++|+++.+.+|.+-+... ..+...+.|+
T Consensus 109 ~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~le 188 (382)
T KOG1909|consen 109 IRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGATALAEAFQSHPTLE 188 (382)
T ss_pred hHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccHHHHHHHHHhccccc
Confidence 443 46789999999999987632111 23345789999999998875433 3445678999
Q ss_pred EEEecCCccccc----cccccccCCCccEEEccCCccccccccccccChhhhcCCCCccEEEcccccccccCCccC----
Q 040195 162 VIYIRGNSLGGK----IPTTLGLLRNLVYLNVNENQFWYVSSFSGSLPFDILVNLPNLKKLCIAENNFVGSIPDSL---- 233 (472)
Q Consensus 162 ~L~l~~~~~~~~----~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l---- 233 (472)
++.+..|.|... ....+..+++|++||+.+|.+..-++ ......+...++|+++++++|.+.......|
T Consensus 189 evr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs---~~LakaL~s~~~L~El~l~dcll~~~Ga~a~~~al 265 (382)
T KOG1909|consen 189 EVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGS---VALAKALSSWPHLRELNLGDCLLENEGAIAFVDAL 265 (382)
T ss_pred eEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHH---HHHHHHhcccchheeecccccccccccHHHHHHHH
Confidence 999999987532 23456789999999999998865542 2234456677899999999999876443322
Q ss_pred -cCCCCCCEEecCCCccccccccc----ccccCCCCeEEcCCCcCC
Q 040195 234 -SNASNLELLELAGNQFEGKVSID----FSSLKNLAVLNLERNNLG 274 (472)
Q Consensus 234 -~~~~~L~~L~l~~~~~~~~~~~~----l~~l~~L~~L~l~~~~~~ 274 (472)
...|.|+.+.+.+|.++...... ....+.|..|++++|.+.
T Consensus 266 ~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l~ 311 (382)
T KOG1909|consen 266 KESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRLG 311 (382)
T ss_pred hccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCccccc
Confidence 34799999999999987543332 445789999999999985
No 25
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.20 E-value=5.4e-12 Score=130.29 Aligned_cols=181 Identities=22% Similarity=0.270 Sum_probs=120.5
Q ss_pred CCCCCCCCCCCCCCCCC------CCcccccc-----eeeCCCCCceEEEECCCCccCcccCccccCCCCccEEeccCCc-
Q 040195 6 IPHQHDPSGVTSSWNNT------INLCQWMG-----VTCGHRHQRVTELDLSNQRIGGVLSPYVGNLSFLRYINLSDNG- 73 (472)
Q Consensus 6 ~~~~~~~~~~~~~~~~~------~~~~~~~~-----~~~~~~~~~l~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~~~- 73 (472)
.+.|||..+..+-|... .++|--.+ ..-...+..++++.+.++.+...... ..++.|+.|-+..+.
T Consensus 480 ~~kmHDvvRe~al~ias~~~~~~e~~iv~~~~~~~~~~~~~~~~~~rr~s~~~~~~~~~~~~--~~~~~L~tLll~~n~~ 557 (889)
T KOG4658|consen 480 TVKMHDVVREMALWIASDFGKQEENQIVSDGVGLSEIPQVKSWNSVRRMSLMNNKIEHIAGS--SENPKLRTLLLQRNSD 557 (889)
T ss_pred EEEeeHHHHHHHHHHhccccccccceEEECCcCccccccccchhheeEEEEeccchhhccCC--CCCCccceEEEeecch
Confidence 47899999999999665 12222211 11123334667777777766544322 244478888888775
Q ss_pred -CccCcchhhhcCCCCCEEEccCcccCCCCCcccCCCCCCcEEEcccCcCcccCCccccCCCCCcEEEccccCCCCCCCc
Q 040195 74 -FHGEIPQEIGNLYRLEKLELSNNSFSGTIPTNLSRCSELTHLRVANNKLEGQIPKEIGSLLKLQTLALYYNNLTGQLPD 152 (472)
Q Consensus 74 -~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~i~~~~~~ 152 (472)
+.....+.|..++.|+.||+++|.-.+.+|..++.+-+|++|+++++.+. .+|..+.++++|.+|++..+......+.
T Consensus 558 ~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~-~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~ 636 (889)
T KOG4658|consen 558 WLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGIS-HLPSGLGNLKKLIYLNLEVTGRLESIPG 636 (889)
T ss_pred hhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCcc-ccchHHHHHHhhheeccccccccccccc
Confidence 45455556888888999999887655578888888888888888888888 7888888888888888887765444555
Q ss_pred cccCCCCccEEEecCCcc--ccccccccccCCCccEEEc
Q 040195 153 FVGNLSALQVIYIRGNSL--GGKIPTTLGLLRNLVYLNV 189 (472)
Q Consensus 153 ~l~~~~~L~~L~l~~~~~--~~~~~~~l~~~~~L~~L~l 189 (472)
....+++|++|.+..... +......+.++..|+.+..
T Consensus 637 i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~ 675 (889)
T KOG4658|consen 637 ILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSI 675 (889)
T ss_pred hhhhcccccEEEeeccccccchhhHHhhhcccchhhhee
Confidence 556688888888766532 2222233344445554444
No 26
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.15 E-value=7e-12 Score=113.87 Aligned_cols=132 Identities=20% Similarity=0.191 Sum_probs=80.2
Q ss_pred cccEEEeecccccC-cccccccCccCcceEeccccccccCcchhhcCCCCCcEEEccCCcCcccc-ccchhcccccCeee
Q 040195 305 TMTHFYIGGNQILG-IIHFGIRNLVNLIALGMQSNQLHGTIPDVIGELKNLQILSLFGNFLHGSI-PSSLGNLTKLANLE 382 (472)
Q Consensus 305 ~l~~l~l~~~~~~~-~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~L~~n~l~~~~-~~~l~~~~~L~~L~ 382 (472)
.++.|.+++|.++. .....+..+|+|+.|++..|............++.|++|+|++|++.+.. -.....++.|+.|+
T Consensus 198 ~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Ln 277 (505)
T KOG3207|consen 198 HLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLN 277 (505)
T ss_pred hhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhhh
Confidence 45555555555552 12223456777888888777432232333445677888888888775321 13456778888888
Q ss_pred ccCCcccccC-CcC-----ccCCCCCceEeecCCcccccCC--hhhhhhcccceEEEcCCCccc
Q 040195 383 LSSNSLQGNI-PLS-----VGNCQNLIGFDASHITLTGALP--QQLLSITTLSLYLDLSHNLLN 438 (472)
Q Consensus 383 l~~~~~~~~~-~~~-----~~~~~~L~~L~ls~~~~~~~~~--~~l~~~~~l~~~L~ls~n~l~ 438 (472)
++.|.+...- +.. ...+++|++|+++.|++. .++ ..+..+.+++ .|.+..|+++
T Consensus 278 ls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~-~w~sl~~l~~l~nlk-~l~~~~n~ln 339 (505)
T KOG3207|consen 278 LSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIR-DWRSLNHLRTLENLK-HLRITLNYLN 339 (505)
T ss_pred ccccCcchhcCCCccchhhhcccccceeeecccCccc-cccccchhhccchhh-hhhccccccc
Confidence 8888777432 222 355678888888888885 232 3445556666 6666666665
No 27
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.09 E-value=1.2e-11 Score=112.31 Aligned_cols=210 Identities=22% Similarity=0.237 Sum_probs=115.3
Q ss_pred CCCCccEEeccCCcCccCcc-hhhhcCCCCCEEEccCcccCCC--CCcccCCCCCCcEEEcccCcCcccCC-ccccCCCC
Q 040195 60 NLSFLRYINLSDNGFHGEIP-QEIGNLYRLEKLELSNNSFSGT--IPTNLSRCSELTHLRVANNKLEGQIP-KEIGSLLK 135 (472)
Q Consensus 60 ~~~~L~~L~L~~~~~~~~~~-~~~~~l~~L~~L~L~~~~~~~~--~~~~l~~l~~L~~L~l~~~~~~~~~~-~~l~~l~~ 135 (472)
++.+|+++.|.++....... .....|++++.|+|+.|-+... .......+|+|+.|+++.|.+..... ..-..+++
T Consensus 119 n~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~ 198 (505)
T KOG3207|consen 119 NLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSH 198 (505)
T ss_pred hHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhh
Confidence 45666666666665542211 2455666777777776654421 12223456677777777666541111 11124566
Q ss_pred CcEEEccccCCCCCCC-ccccCCCCccEEEecCCccccccccccccCCCccEEEccCCccccccccccccChhhhcCCCC
Q 040195 136 LQTLALYYNNLTGQLP-DFVGNLSALQVIYIRGNSLGGKIPTTLGLLRNLVYLNVNENQFWYVSSFSGSLPFDILVNLPN 214 (472)
Q Consensus 136 L~~L~l~~~~i~~~~~-~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~ 214 (472)
|+.|.++.|+++.... .....+|+|+.|++.+|............++.|+.|++++|.+-+.+.. ...+.+|.
T Consensus 199 lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~------~~~~~l~~ 272 (505)
T KOG3207|consen 199 LKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQG------YKVGTLPG 272 (505)
T ss_pred hheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccc------cccccccc
Confidence 7777777776653221 2223467777777776642212223334456677777777766444321 12345667
Q ss_pred ccEEEccccccccc-CCcc-----CcCCCCCCEEecCCCcccccc-cccccccCCCCeEEcCCCcCCC
Q 040195 215 LKKLCIAENNFVGS-IPDS-----LSNASNLELLELAGNQFEGKV-SIDFSSLKNLAVLNLERNNLGI 275 (472)
Q Consensus 215 L~~L~l~~~~l~~~-~~~~-----l~~~~~L~~L~l~~~~~~~~~-~~~l~~l~~L~~L~l~~~~~~~ 275 (472)
|..|.++.+.+.+. .|+. ...+++|+.|++..|++.+.. ...+..+++|+.|.+..+.++.
T Consensus 273 L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~ln~ 340 (505)
T KOG3207|consen 273 LNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLNYLNK 340 (505)
T ss_pred hhhhhccccCcchhcCCCccchhhhcccccceeeecccCccccccccchhhccchhhhhhcccccccc
Confidence 77777777766652 2222 345677777777777775321 2234556677777777776653
No 28
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.08 E-value=1.4e-10 Score=112.07 Aligned_cols=156 Identities=33% Similarity=0.524 Sum_probs=107.2
Q ss_pred cccEEEeecccccCcccccccCccCcceEeccccccccCcchhhcCCCCCcEEEccCCcCccccccchhcccccCeeecc
Q 040195 305 TMTHFYIGGNQILGIIHFGIRNLVNLIALGMQSNQLHGTIPDVIGELKNLQILSLFGNFLHGSIPSSLGNLTKLANLELS 384 (472)
Q Consensus 305 ~l~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~ 384 (472)
+++.++++++.+..+. ..+..+++|+.|++++|.+. .++...+..+.|+.|++++|++. .++........|+++.++
T Consensus 141 nL~~L~l~~N~i~~l~-~~~~~l~~L~~L~l~~N~l~-~l~~~~~~~~~L~~L~ls~N~i~-~l~~~~~~~~~L~~l~~~ 217 (394)
T COG4886 141 NLKELDLSDNKIESLP-SPLRNLPNLKNLDLSFNDLS-DLPKLLSNLSNLNNLDLSGNKIS-DLPPEIELLSALEELDLS 217 (394)
T ss_pred hcccccccccchhhhh-hhhhccccccccccCCchhh-hhhhhhhhhhhhhheeccCCccc-cCchhhhhhhhhhhhhhc
Confidence 3445555555544331 34567778888888888887 44444446788888888888887 555554556668888888
Q ss_pred CCcccccCCcCccCCCCCceEeecCCcccccCChhhhhhcccceEEEcCCCcccccccccccCCCCCceEeccCCeeccc
Q 040195 385 SNSLQGNIPLSVGNCQNLIGFDASHITLTGALPQQLLSITTLSLYLDLSHNLLNGSLLLQVGNLKNLILLDISGNQFSGV 464 (472)
Q Consensus 385 ~~~~~~~~~~~~~~~~~L~~L~ls~~~~~~~~~~~l~~~~~l~~~L~ls~n~l~~~~~~~l~~~~~L~~L~L~~n~~~~~ 464 (472)
+|++. ..+..+..++.+..+.+.+|++. ..+..+..++.++ .|++++|+++.... +....+++.|++++|.++..
T Consensus 218 ~N~~~-~~~~~~~~~~~l~~l~l~~n~~~-~~~~~~~~l~~l~-~L~~s~n~i~~i~~--~~~~~~l~~L~~s~n~~~~~ 292 (394)
T COG4886 218 NNSII-ELLSSLSNLKNLSGLELSNNKLE-DLPESIGNLSNLE-TLDLSNNQISSISS--LGSLTNLRELDLSGNSLSNA 292 (394)
T ss_pred CCcce-ecchhhhhcccccccccCCceee-eccchhccccccc-eecccccccccccc--ccccCccCEEeccCcccccc
Confidence 88644 45556777778888888888776 3466677777777 88888888875433 77778888888888887765
Q ss_pred cCCc
Q 040195 465 IPVT 468 (472)
Q Consensus 465 ~p~~ 468 (472)
.|..
T Consensus 293 ~~~~ 296 (394)
T COG4886 293 LPLI 296 (394)
T ss_pred chhh
Confidence 5543
No 29
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.02 E-value=8.2e-12 Score=117.03 Aligned_cols=138 Identities=31% Similarity=0.473 Sum_probs=101.5
Q ss_pred cccccCccCcceEeccccccccCcchhhcCCCCCcEEEccCCcCccccccchhcccccCeeeccCCcccccCCcCccCCC
Q 040195 321 HFGIRNLVNLIALGMQSNQLHGTIPDVIGELKNLQILSLFGNFLHGSIPSSLGNLTKLANLELSSNSLQGNIPLSVGNCQ 400 (472)
Q Consensus 321 ~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~ 400 (472)
+..+..+..|..++|+.|++. ..|..+.. -.|+.|.+++|+++ .+|+.++..+.|..|+.+.|.+. .+|..+..+.
T Consensus 114 p~~i~~L~~lt~l~ls~NqlS-~lp~~lC~-lpLkvli~sNNkl~-~lp~~ig~~~tl~~ld~s~nei~-slpsql~~l~ 189 (722)
T KOG0532|consen 114 PEAICNLEALTFLDLSSNQLS-HLPDGLCD-LPLKVLIVSNNKLT-SLPEEIGLLPTLAHLDVSKNEIQ-SLPSQLGYLT 189 (722)
T ss_pred chhhhhhhHHHHhhhccchhh-cCChhhhc-CcceeEEEecCccc-cCCcccccchhHHHhhhhhhhhh-hchHHhhhHH
Confidence 335566667777777777776 44544443 35778888888887 67777777788888888888877 6777777888
Q ss_pred CCceEeecCCcccccCChhhhhhcccceEEEcCCCcccccccccccCCCCCceEeccCCeeccccCC
Q 040195 401 NLIGFDASHITLTGALPQQLLSITTLSLYLDLSHNLLNGSLLLQVGNLKNLILLDISGNQFSGVIPV 467 (472)
Q Consensus 401 ~L~~L~ls~~~~~~~~~~~l~~~~~l~~~L~ls~n~l~~~~~~~l~~~~~L~~L~L~~n~~~~~~p~ 467 (472)
+|+.|++..|++. .+|..+..+ .|. .||+|+|++. .+|.+|.+++.|++|.|.+|++. ..|.
T Consensus 190 slr~l~vrRn~l~-~lp~El~~L-pLi-~lDfScNkis-~iPv~fr~m~~Lq~l~LenNPLq-SPPA 251 (722)
T KOG0532|consen 190 SLRDLNVRRNHLE-DLPEELCSL-PLI-RLDFSCNKIS-YLPVDFRKMRHLQVLQLENNPLQ-SPPA 251 (722)
T ss_pred HHHHHHHhhhhhh-hCCHHHhCC-cee-eeecccCcee-ecchhhhhhhhheeeeeccCCCC-CChH
Confidence 8888888888887 577777743 455 6888888887 67888888888888888888875 4443
No 30
>PLN03150 hypothetical protein; Provisional
Probab=99.02 E-value=1.5e-09 Score=109.89 Aligned_cols=127 Identities=33% Similarity=0.592 Sum_probs=78.7
Q ss_pred CCCCCCCCcc----cccceeeCCCC----CceEEEECCCCccCcccCccccCCCCccEEeccCCcCccCcchhhhcCCCC
Q 040195 17 SSWNNTINLC----QWMGVTCGHRH----QRVTELDLSNQRIGGVLSPYVGNLSFLRYINLSDNGFHGEIPQEIGNLYRL 88 (472)
Q Consensus 17 ~~~~~~~~~~----~~~~~~~~~~~----~~l~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~l~~L 88 (472)
..|.. ..|+ .|.|+.|.... ..++.|+++++.+.+..+..+..+++|+.|+|++|.+.+..|..+..+++|
T Consensus 390 ~~W~g-~~C~p~~~~w~Gv~C~~~~~~~~~~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L 468 (623)
T PLN03150 390 FGWNG-DPCVPQQHPWSGADCQFDSTKGKWFIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSL 468 (623)
T ss_pred CCCCC-CCCCCcccccccceeeccCCCCceEEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCC
Confidence 37964 3553 79999995221 236667777776666666666666666666666666665666666666666
Q ss_pred CEEEccCcccCCCCCcccCCCCCCcEEEcccCcCcccCCccccCC-CCCcEEEcccc
Q 040195 89 EKLELSNNSFSGTIPTNLSRCSELTHLRVANNKLEGQIPKEIGSL-LKLQTLALYYN 144 (472)
Q Consensus 89 ~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l-~~L~~L~l~~~ 144 (472)
+.|++++|.+.+..|..+.++++|++|++++|.+.+..|..+... .++..+++.+|
T Consensus 469 ~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~~~~~~~~l~~~~N 525 (623)
T PLN03150 469 EVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPAALGGRLLHRASFNFTDN 525 (623)
T ss_pred CEEECCCCCCCCCCchHHhcCCCCCEEECcCCcccccCChHHhhccccCceEEecCC
Confidence 666666666665666666666666666666666665555554432 23444554444
No 31
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.01 E-value=2.5e-10 Score=94.61 Aligned_cols=82 Identities=26% Similarity=0.376 Sum_probs=18.8
Q ss_pred CCCcEEEcccCcCcccCCccccCCCCCcEEEccccCCCCCCCccc-cCCCCccEEEecCCccccc-cccccccCCCccEE
Q 040195 110 SELTHLRVANNKLEGQIPKEIGSLLKLQTLALYYNNLTGQLPDFV-GNLSALQVIYIRGNSLGGK-IPTTLGLLRNLVYL 187 (472)
Q Consensus 110 ~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~i~~~~~~~l-~~~~~L~~L~l~~~~~~~~-~~~~l~~~~~L~~L 187 (472)
.+|+.|++++|.++.. +.+..++.|++|++++|.+++ ....+ ..+++|++|++++|++... ....++.+++|++|
T Consensus 42 ~~L~~L~Ls~N~I~~l--~~l~~L~~L~~L~L~~N~I~~-i~~~l~~~lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L 118 (175)
T PF14580_consen 42 DKLEVLDLSNNQITKL--EGLPGLPRLKTLDLSNNRISS-ISEGLDKNLPNLQELYLSNNKISDLNELEPLSSLPKLRVL 118 (175)
T ss_dssp TT--EEE-TTS--S----TT----TT--EEE--SS---S--CHHHHHH-TT--EEE-TTS---SCCCCGGGGG-TT--EE
T ss_pred cCCCEEECCCCCCccc--cCccChhhhhhcccCCCCCCc-cccchHHhCCcCCEEECcCCcCCChHHhHHHHcCCCccee
Confidence 3444444444444311 223334444444444444432 11112 1234444444444443311 11233344444444
Q ss_pred EccCCcc
Q 040195 188 NVNENQF 194 (472)
Q Consensus 188 ~l~~~~l 194 (472)
++.+|++
T Consensus 119 ~L~~NPv 125 (175)
T PF14580_consen 119 SLEGNPV 125 (175)
T ss_dssp E-TT-GG
T ss_pred eccCCcc
Confidence 4444443
No 32
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.95 E-value=1.1e-09 Score=90.86 Aligned_cols=85 Identities=25% Similarity=0.320 Sum_probs=18.1
Q ss_pred CCCCCcEEEcccCcCcccCCcccc-CCCCCcEEEccccCCCCCCCccccCCCCccEEEecCCcccccccccc-ccCCCcc
Q 040195 108 RCSELTHLRVANNKLEGQIPKEIG-SLLKLQTLALYYNNLTGQLPDFVGNLSALQVIYIRGNSLGGKIPTTL-GLLRNLV 185 (472)
Q Consensus 108 ~l~~L~~L~l~~~~~~~~~~~~l~-~l~~L~~L~l~~~~i~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l-~~~~~L~ 185 (472)
+..++++|+++++.++.. +.+. .+.+|+.|++++|.+.. + +.+..+++|++|++++|.++.. ...+ ..+++|+
T Consensus 17 n~~~~~~L~L~~n~I~~I--e~L~~~l~~L~~L~Ls~N~I~~-l-~~l~~L~~L~~L~L~~N~I~~i-~~~l~~~lp~L~ 91 (175)
T PF14580_consen 17 NPVKLRELNLRGNQISTI--ENLGATLDKLEVLDLSNNQITK-L-EGLPGLPRLKTLDLSNNRISSI-SEGLDKNLPNLQ 91 (175)
T ss_dssp ---------------------S--TT-TT--EEE-TTS--S----TT----TT--EEE--SS---S--CHHHHHH-TT--
T ss_pred cccccccccccccccccc--cchhhhhcCCCEEECCCCCCcc-c-cCccChhhhhhcccCCCCCCcc-ccchHHhCCcCC
Confidence 344556666666665521 2333 34556666666666552 2 2344555566666666655532 2222 2455555
Q ss_pred EEEccCCccccc
Q 040195 186 YLNVNENQFWYV 197 (472)
Q Consensus 186 ~L~l~~~~l~~~ 197 (472)
+|.+++|++.++
T Consensus 92 ~L~L~~N~I~~l 103 (175)
T PF14580_consen 92 ELYLSNNKISDL 103 (175)
T ss_dssp EEE-TTS---SC
T ss_pred EEECcCCcCCCh
Confidence 555555555333
No 33
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.95 E-value=2.1e-10 Score=99.44 Aligned_cols=131 Identities=24% Similarity=0.248 Sum_probs=104.7
Q ss_pred cCccCcceEeccccccccCcchhhcCCCCCcEEEccCCcCccccccchhcccccCeeeccCCcccccCCcCccCCCCCce
Q 040195 325 RNLVNLIALGMQSNQLHGTIPDVIGELKNLQILSLFGNFLHGSIPSSLGNLTKLANLELSSNSLQGNIPLSVGNCQNLIG 404 (472)
Q Consensus 325 ~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~ 404 (472)
.....|+++|+++|.|+ .+-+.+.-.|.++.|+++.|.+.... .+..+++|..|++++|.++ .+..+-..+-+.++
T Consensus 281 dTWq~LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~~v~--nLa~L~~L~~LDLS~N~Ls-~~~Gwh~KLGNIKt 356 (490)
T KOG1259|consen 281 DTWQELTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIRTVQ--NLAELPQLQLLDLSGNLLA-ECVGWHLKLGNIKT 356 (490)
T ss_pred chHhhhhhccccccchh-hhhhhhhhccceeEEeccccceeeeh--hhhhcccceEeecccchhH-hhhhhHhhhcCEee
Confidence 34567899999999888 44455566799999999999987333 3778899999999999988 56667777889999
Q ss_pred EeecCCcccccCChhhhhhcccceEEEcCCCccccc-ccccccCCCCCceEeccCCeec
Q 040195 405 FDASHITLTGALPQQLLSITTLSLYLDLSHNLLNGS-LLLQVGNLKNLILLDISGNQFS 462 (472)
Q Consensus 405 L~ls~~~~~~~~~~~l~~~~~l~~~L~ls~n~l~~~-~~~~l~~~~~L~~L~L~~n~~~ 462 (472)
|.+++|.+.+ ...+..+-++. .||+++|+|... -...+.+++-|+.+.|.+|++.
T Consensus 357 L~La~N~iE~--LSGL~KLYSLv-nLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~ 412 (490)
T KOG1259|consen 357 LKLAQNKIET--LSGLRKLYSLV-NLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLA 412 (490)
T ss_pred eehhhhhHhh--hhhhHhhhhhe-eccccccchhhHHHhcccccccHHHHHhhcCCCcc
Confidence 9999998862 45577788888 999999998743 2256788899999999999986
No 34
>PLN03150 hypothetical protein; Provisional
Probab=98.91 E-value=2.5e-09 Score=108.43 Aligned_cols=106 Identities=31% Similarity=0.477 Sum_probs=50.5
Q ss_pred CcEEEccCCcCccccccchhcccccCeeeccCCcccccCCcCccCCCCCceEeecCCcccccCChhhhhhcccceEEEcC
Q 040195 354 LQILSLFGNFLHGSIPSSLGNLTKLANLELSSNSLQGNIPLSVGNCQNLIGFDASHITLTGALPQQLLSITTLSLYLDLS 433 (472)
Q Consensus 354 L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ls~~~~~~~~~~~l~~~~~l~~~L~ls 433 (472)
++.|+|++|.+.+.+|..+..+++|+.|+|++|.+.+.+|..+..+++|+.|++++|.+.+.+|..+.++++|+ .|+|+
T Consensus 420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~-~L~Ls 498 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLR-ILNLN 498 (623)
T ss_pred EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCC-EEECc
Confidence 34444444444444444444444555555555544444444444445555555555554444444444444444 45555
Q ss_pred CCcccccccccccCC-CCCceEeccCCe
Q 040195 434 HNLLNGSLLLQVGNL-KNLILLDISGNQ 460 (472)
Q Consensus 434 ~n~l~~~~~~~l~~~-~~L~~L~L~~n~ 460 (472)
+|++++.+|..+... .++..+++++|.
T Consensus 499 ~N~l~g~iP~~l~~~~~~~~~l~~~~N~ 526 (623)
T PLN03150 499 GNSLSGRVPAALGGRLLHRASFNFTDNA 526 (623)
T ss_pred CCcccccCChHHhhccccCceEEecCCc
Confidence 554444444444322 234444444444
No 35
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.90 E-value=1.1e-09 Score=113.36 Aligned_cols=131 Identities=24% Similarity=0.283 Sum_probs=91.6
Q ss_pred CCCCccEEeccCCcCccCcchhhhcCCCCCEEEccCcc--cCCCCCcccCCCCCCcEEEcccCcCcccCCccccCCCCCc
Q 040195 60 NLSFLRYINLSDNGFHGEIPQEIGNLYRLEKLELSNNS--FSGTIPTNLSRCSELTHLRVANNKLEGQIPKEIGSLLKLQ 137 (472)
Q Consensus 60 ~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~--~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~ 137 (472)
.....|...+.++.+.. .+.. ..+++|++|-+..+. +.......|..++.|++||+++|.-...+|..++.+-+||
T Consensus 521 ~~~~~rr~s~~~~~~~~-~~~~-~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~Lr 598 (889)
T KOG4658|consen 521 SWNSVRRMSLMNNKIEH-IAGS-SENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLR 598 (889)
T ss_pred chhheeEEEEeccchhh-ccCC-CCCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhh
Confidence 34566777777666542 2222 234578888877774 4434445577788888888887766567888888888888
Q ss_pred EEEccccCCCCCCCccccCCCCccEEEecCCccccccccccccCCCccEEEccCCc
Q 040195 138 TLALYYNNLTGQLPDFVGNLSALQVIYIRGNSLGGKIPTTLGLLRNLVYLNVNENQ 193 (472)
Q Consensus 138 ~L~l~~~~i~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~ 193 (472)
.|+++++.+. .+|..+.++.+|.+|++..+......+.....+++|++|.+....
T Consensus 599 yL~L~~t~I~-~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~ 653 (889)
T KOG4658|consen 599 YLDLSDTGIS-HLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSA 653 (889)
T ss_pred cccccCCCcc-ccchHHHHHHhhheeccccccccccccchhhhcccccEEEeeccc
Confidence 8888888887 788888888888888888765443445555668888888876654
No 36
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.89 E-value=6.5e-10 Score=96.47 Aligned_cols=205 Identities=21% Similarity=0.189 Sum_probs=132.8
Q ss_pred cCccccCCCCccEEeccCCcCccCcchhhhcCCCCCEEEccCcccCCCCCcccCCCCCCcEEEcccCc-CcccCCccccC
Q 040195 54 LSPYVGNLSFLRYINLSDNGFHGEIPQEIGNLYRLEKLELSNNSFSGTIPTNLSRCSELTHLRVANNK-LEGQIPKEIGS 132 (472)
Q Consensus 54 ~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~-~~~~~~~~l~~ 132 (472)
++-.+..+++|..+.++.+.-..+ -+....=|.|+++...+..+.. .| .+--...+.....+.-. .++.....+.-
T Consensus 206 l~f~l~~f~~l~~~~~s~~~~~~i-~~~~~~kptl~t~~v~~s~~~~-~~-~l~pe~~~~D~~~~E~~t~~G~~~~~~dT 282 (490)
T KOG1259|consen 206 LSFNLNAFRNLKTLKFSALSTENI-VDIELLKPTLQTICVHNTTIQD-VP-SLLPETILADPSGSEPSTSNGSALVSADT 282 (490)
T ss_pred cccchHHhhhhheeeeeccchhhe-eceeecCchhheeeeecccccc-cc-cccchhhhcCccCCCCCccCCceEEecch
Confidence 334455677777777777654321 1222333667777776654431 11 12112222222121111 11111122333
Q ss_pred CCCCcEEEccccCCCCCCCccccCCCCccEEEecCCccccccccccccCCCccEEEccCCccccccccccccChhhhcCC
Q 040195 133 LLKLQTLALYYNNLTGQLPDFVGNLSALQVIYIRGNSLGGKIPTTLGLLRNLVYLNVNENQFWYVSSFSGSLPFDILVNL 212 (472)
Q Consensus 133 l~~L~~L~l~~~~i~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~ 212 (472)
.+.|+++++++|.|+ .+.....-.|+++.|+++.|.+.. .+.++.+++|+.|++++|.+..+..+ -..+
T Consensus 283 Wq~LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~~--v~nLa~L~~L~~LDLS~N~Ls~~~Gw--------h~KL 351 (490)
T KOG1259|consen 283 WQELTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIRT--VQNLAELPQLQLLDLSGNLLAECVGW--------HLKL 351 (490)
T ss_pred Hhhhhhccccccchh-hhhhhhhhccceeEEeccccceee--ehhhhhcccceEeecccchhHhhhhh--------Hhhh
Confidence 467999999999987 555656667899999999999863 34588889999999999987555432 2356
Q ss_pred CCccEEEcccccccccCCccCcCCCCCCEEecCCCccccc-ccccccccCCCCeEEcCCCcCC
Q 040195 213 PNLKKLCIAENNFVGSIPDSLSNASNLELLELAGNQFEGK-VSIDFSSLKNLAVLNLERNNLG 274 (472)
Q Consensus 213 ~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~-~~~~l~~l~~L~~L~l~~~~~~ 274 (472)
.+++.|.+.+|.+.+. ..++++-+|..|++++|++... ....++++|.|+.+.+.+|++.
T Consensus 352 GNIKtL~La~N~iE~L--SGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~ 412 (490)
T KOG1259|consen 352 GNIKTLKLAQNKIETL--SGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLA 412 (490)
T ss_pred cCEeeeehhhhhHhhh--hhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCcc
Confidence 7899999999988642 3467788889999999988643 2346889999999999999886
No 37
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.88 E-value=3.7e-09 Score=102.31 Aligned_cols=194 Identities=33% Similarity=0.523 Sum_probs=144.6
Q ss_pred EEeccCCcCccCcchhhhcCCCCCEEEccCcccCCCCCcccCCCC-CCcEEEcccCcCcccCCccccCCCCCcEEEcccc
Q 040195 66 YINLSDNGFHGEIPQEIGNLYRLEKLELSNNSFSGTIPTNLSRCS-ELTHLRVANNKLEGQIPKEIGSLLKLQTLALYYN 144 (472)
Q Consensus 66 ~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~l~~l~-~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~ 144 (472)
.+....+.+. .....+..+..++.|++.++.+. ..+....... +|+.|+++++.+. ..+..+..+++|+.|++++|
T Consensus 97 ~l~~~~~~~~-~~~~~~~~~~~l~~L~l~~n~i~-~i~~~~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N 173 (394)
T COG4886 97 SLDLNLNRLR-SNISELLELTNLTSLDLDNNNIT-DIPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFN 173 (394)
T ss_pred eeeccccccc-cCchhhhcccceeEEecCCcccc-cCccccccchhhcccccccccchh-hhhhhhhccccccccccCCc
Confidence 4666666653 23344566688999999999888 5555566664 8999999999987 55567888999999999999
Q ss_pred CCCCCCCccccCCCCccEEEecCCccccccccccccCCCccEEEccCCccccccccccccChhhhcCCCCccEEEccccc
Q 040195 145 NLTGQLPDFVGNLSALQVIYIRGNSLGGKIPTTLGLLRNLVYLNVNENQFWYVSSFSGSLPFDILVNLPNLKKLCIAENN 224 (472)
Q Consensus 145 ~i~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 224 (472)
.+. ..+......+.|+.|++++|++. ..+........|+++.+++|+.... ...+....++..+.+.++.
T Consensus 174 ~l~-~l~~~~~~~~~L~~L~ls~N~i~-~l~~~~~~~~~L~~l~~~~N~~~~~--------~~~~~~~~~l~~l~l~~n~ 243 (394)
T COG4886 174 DLS-DLPKLLSNLSNLNNLDLSGNKIS-DLPPEIELLSALEELDLSNNSIIEL--------LSSLSNLKNLSGLELSNNK 243 (394)
T ss_pred hhh-hhhhhhhhhhhhhheeccCCccc-cCchhhhhhhhhhhhhhcCCcceec--------chhhhhcccccccccCCce
Confidence 998 56655557889999999999987 4555555566799999999852111 1223456777777788887
Q ss_pred ccccCCccCcCCCCCCEEecCCCcccccccccccccCCCCeEEcCCCcCCC
Q 040195 225 FVGSIPDSLSNASNLELLELAGNQFEGKVSIDFSSLKNLAVLNLERNNLGI 275 (472)
Q Consensus 225 l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~ 275 (472)
+.. .+..++.++.++.|++++|.++.... +..+.+++.|+++++.+..
T Consensus 244 ~~~-~~~~~~~l~~l~~L~~s~n~i~~i~~--~~~~~~l~~L~~s~n~~~~ 291 (394)
T COG4886 244 LED-LPESIGNLSNLETLDLSNNQISSISS--LGSLTNLRELDLSGNSLSN 291 (394)
T ss_pred eee-ccchhccccccceecccccccccccc--ccccCccCEEeccCccccc
Confidence 763 25667788889999999999975444 7888999999999988753
No 38
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.84 E-value=1.1e-10 Score=109.53 Aligned_cols=170 Identities=31% Similarity=0.491 Sum_probs=96.4
Q ss_pred cEEeccCCcCccCcchhhhcCCCCCEEEccCcccCCCCCcccCCCCCCcEEEcccCcCcccCCccccCCCCCcEEEcccc
Q 040195 65 RYINLSDNGFHGEIPQEIGNLYRLEKLELSNNSFSGTIPTNLSRCSELTHLRVANNKLEGQIPKEIGSLLKLQTLALYYN 144 (472)
Q Consensus 65 ~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~ 144 (472)
...+++.|.+. .+|..+..+..|+.+.++.|.+. ..|..+.++..|++++++.|.+. .+|..++.+ -|+.|.+++|
T Consensus 78 ~~aDlsrNR~~-elp~~~~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC~l-pLkvli~sNN 153 (722)
T KOG0532|consen 78 VFADLSRNRFS-ELPEEACAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLS-HLPDGLCDL-PLKVLIVSNN 153 (722)
T ss_pred hhhhccccccc-cCchHHHHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhh-cCChhhhcC-cceeEEEecC
Confidence 34555555555 44555555555666666666555 45555666666666666666655 455555544 3566666666
Q ss_pred CCCCCCCccccCCCCccEEEecCCccccccccccccCCCccEEEccCCccccccccccccChhhhcCCCCccEEEccccc
Q 040195 145 NLTGQLPDFVGNLSALQVIYIRGNSLGGKIPTTLGLLRNLVYLNVNENQFWYVSSFSGSLPFDILVNLPNLKKLCIAENN 224 (472)
Q Consensus 145 ~i~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 224 (472)
+++ .+|..++..++|..|+.+.|.+. ..+..++.+.+|+.|++..|++. .+|.+.. .-.|..||++.|+
T Consensus 154 kl~-~lp~~ig~~~tl~~ld~s~nei~-slpsql~~l~slr~l~vrRn~l~-------~lp~El~--~LpLi~lDfScNk 222 (722)
T KOG0532|consen 154 KLT-SLPEEIGLLPTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRNHLE-------DLPEELC--SLPLIRLDFSCNK 222 (722)
T ss_pred ccc-cCCcccccchhHHHhhhhhhhhh-hchHHhhhHHHHHHHHHhhhhhh-------hCCHHHh--CCceeeeecccCc
Confidence 665 55555555566666666666655 44555566666666666666552 2232222 2235566666666
Q ss_pred ccccCCccCcCCCCCCEEecCCCccc
Q 040195 225 FVGSIPDSLSNASNLELLELAGNQFE 250 (472)
Q Consensus 225 l~~~~~~~l~~~~~L~~L~l~~~~~~ 250 (472)
+. .+|-.|.++..|++|-|.+|.+.
T Consensus 223 is-~iPv~fr~m~~Lq~l~LenNPLq 247 (722)
T KOG0532|consen 223 IS-YLPVDFRKMRHLQVLQLENNPLQ 247 (722)
T ss_pred ee-ecchhhhhhhhheeeeeccCCCC
Confidence 55 34555666666666666666554
No 39
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.80 E-value=4.8e-09 Score=71.35 Aligned_cols=59 Identities=37% Similarity=0.523 Sum_probs=25.9
Q ss_pred CcceEeccccccccCcchhhcCCCCCcEEEccCCcCccccccchhcccccCeeeccCCc
Q 040195 329 NLIALGMQSNQLHGTIPDVIGELKNLQILSLFGNFLHGSIPSSLGNLTKLANLELSSNS 387 (472)
Q Consensus 329 ~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~~~ 387 (472)
+|++|++++|.+....+.+|..+++|++|++++|.+....+.+|..+++|++|++++|+
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence 34444444444443333344444444444444444443333444444444444444443
No 40
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.74 E-value=1.3e-08 Score=69.18 Aligned_cols=61 Identities=38% Similarity=0.410 Sum_probs=42.3
Q ss_pred CCCcEEEccCCcCccccccchhcccccCeeeccCCcccccCCcCccCCCCCceEeecCCcc
Q 040195 352 KNLQILSLFGNFLHGSIPSSLGNLTKLANLELSSNSLQGNIPLSVGNCQNLIGFDASHITL 412 (472)
Q Consensus 352 ~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ls~~~~ 412 (472)
++|++|++++|++....+..|..+++|++|++++|.++...+.++..+++|++|++++|++
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 4567777777777655556677777777777777777755566677777777777777654
No 41
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.71 E-value=2.6e-10 Score=98.78 Aligned_cols=86 Identities=26% Similarity=0.201 Sum_probs=52.2
Q ss_pred CccEEEccCCccccccccccccChhhhcCCCCccEEEcccccccccCCccCcCCCCCCEEecCCC-cccccccc-ccccc
Q 040195 183 NLVYLNVNENQFWYVSSFSGSLPFDILVNLPNLKKLCIAENNFVGSIPDSLSNASNLELLELAGN-QFEGKVSI-DFSSL 260 (472)
Q Consensus 183 ~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~~-~~~~~~~~-~l~~l 260 (472)
.|+++|++...+. .+.....+.+|.+|+.|.+.+..+.+.+...++...+|+.++++++ .++..... .+.++
T Consensus 186 Rlq~lDLS~s~it------~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~sc 259 (419)
T KOG2120|consen 186 RLQHLDLSNSVIT------VSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSC 259 (419)
T ss_pred hhHHhhcchhhee------HHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhh
Confidence 4666666665432 1112234556677777777777777666666777777777777775 33322221 35667
Q ss_pred CCCCeEEcCCCcCC
Q 040195 261 KNLAVLNLERNNLG 274 (472)
Q Consensus 261 ~~L~~L~l~~~~~~ 274 (472)
..|..|+++-|...
T Consensus 260 s~L~~LNlsWc~l~ 273 (419)
T KOG2120|consen 260 SRLDELNLSWCFLF 273 (419)
T ss_pred hhHhhcCchHhhcc
Confidence 77777777777654
No 42
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.63 E-value=5.4e-09 Score=101.33 Aligned_cols=81 Identities=25% Similarity=0.295 Sum_probs=38.6
Q ss_pred cceEeccccccccCcchhhcCCCCCcEEEccCCcCccccccchhcccccCeeeccCCccccc---CCcC-ccCCCCCceE
Q 040195 330 LIALGMQSNQLHGTIPDVIGELKNLQILSLFGNFLHGSIPSSLGNLTKLANLELSSNSLQGN---IPLS-VGNCQNLIGF 405 (472)
Q Consensus 330 L~~L~l~~~~i~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~~~~~~~---~~~~-~~~~~~L~~L 405 (472)
|+.+++++|.+.. .+..+..+..+..|++.++++... ..+...+.+..+....+++... .... ....+.++.+
T Consensus 234 L~~l~l~~n~i~~-~~~~~~~~~~l~~l~~~~n~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (414)
T KOG0531|consen 234 LRELYLSGNRISR-SPEGLENLKNLPVLDLSSNRISNL--EGLERLPKLSELWLNDNKLALSEAISQEYITSAAPTLVTL 310 (414)
T ss_pred HHHHhcccCcccc-ccccccccccccccchhhcccccc--ccccccchHHHhccCcchhcchhhhhcccccccccccccc
Confidence 5566666665552 223344555666666666655421 1233344455555555544311 1111 3344555666
Q ss_pred eecCCccc
Q 040195 406 DASHITLT 413 (472)
Q Consensus 406 ~ls~~~~~ 413 (472)
.+.++++.
T Consensus 311 ~~~~~~~~ 318 (414)
T KOG0531|consen 311 TLELNPIR 318 (414)
T ss_pred ccccCccc
Confidence 66665554
No 43
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.57 E-value=1e-09 Score=95.16 Aligned_cols=59 Identities=29% Similarity=0.314 Sum_probs=32.6
Q ss_pred CCcEEEccccCCCC-CCCccccCCCCccEEEecCCccccccccccccCCCccEEEccCCc
Q 040195 135 KLQTLALYYNNLTG-QLPDFVGNLSALQVIYIRGNSLGGKIPTTLGLLRNLVYLNVNENQ 193 (472)
Q Consensus 135 ~L~~L~l~~~~i~~-~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~ 193 (472)
.|+++|+++..++. .+-..+..+.+|+.|.+.++++.+.+...++....|+.++++.+.
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~s 245 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCS 245 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeecccccc
Confidence 46666666655541 122223445666666666666665555556666666666666553
No 44
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.55 E-value=2.5e-08 Score=85.60 Aligned_cols=234 Identities=23% Similarity=0.246 Sum_probs=154.1
Q ss_pred CCceEEEECCCCccCcccC----ccccCCCCccEEeccCCcC---cc-------CcchhhhcCCCCCEEEccCcccCCCC
Q 040195 37 HQRVTELDLSNQRIGGVLS----PYVGNLSFLRYINLSDNGF---HG-------EIPQEIGNLYRLEKLELSNNSFSGTI 102 (472)
Q Consensus 37 ~~~l~~L~l~~~~~~~~~~----~~l~~~~~L~~L~L~~~~~---~~-------~~~~~~~~l~~L~~L~L~~~~~~~~~ 102 (472)
...+..++++||.|..... ..+.+-++|+..+++.-.. .+ .+..++.+||+|+.++|+.|.+....
T Consensus 29 ~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~~ 108 (388)
T COG5238 29 MDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSEF 108 (388)
T ss_pred hcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCccc
Confidence 3678899999999976533 4455668889888876321 11 23345678999999999999887655
Q ss_pred Cc----ccCCCCCCcEEEcccCcCcccCCcc-------------ccCCCCCcEEEccccCCCCCCCcc-----ccCCCCc
Q 040195 103 PT----NLSRCSELTHLRVANNKLEGQIPKE-------------IGSLLKLQTLALYYNNLTGQLPDF-----VGNLSAL 160 (472)
Q Consensus 103 ~~----~l~~l~~L~~L~l~~~~~~~~~~~~-------------l~~l~~L~~L~l~~~~i~~~~~~~-----l~~~~~L 160 (472)
|. .++....|++|.+++|.+....-.. ..+-|.|+++.+..|++- ..+.. +..-..|
T Consensus 109 ~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRle-ngs~~~~a~~l~sh~~l 187 (388)
T COG5238 109 PEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLE-NGSKELSAALLESHENL 187 (388)
T ss_pred chHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhc-cCcHHHHHHHHHhhcCc
Confidence 54 3567789999999998775321111 223478999999988876 33322 2233688
Q ss_pred cEEEecCCccccccc-----cccccCCCccEEEccCCccccccccccccChhhhcCCCCccEEEcccccccccCCccC--
Q 040195 161 QVIYIRGNSLGGKIP-----TTLGLLRNLVYLNVNENQFWYVSSFSGSLPFDILVNLPNLKKLCIAENNFVGSIPDSL-- 233 (472)
Q Consensus 161 ~~L~l~~~~~~~~~~-----~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l-- 233 (472)
+++.+..|.|.-... -.+..+.+|+.|++.+|.++..++ .+....+..-+.|++|.+..|.++....+.+
T Consensus 188 k~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS---~~La~al~~W~~lrEL~lnDClls~~G~~~v~~ 264 (388)
T COG5238 188 KEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGS---RYLADALCEWNLLRELRLNDCLLSNEGVKSVLR 264 (388)
T ss_pred eeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhH---HHHHHHhcccchhhhccccchhhccccHHHHHH
Confidence 999999888753322 233567899999999998765542 2233444445668899999988765433222
Q ss_pred ----cCCCCCCEEecCCCccccccccc--c-----cccCCCCeEEcCCCcCC
Q 040195 234 ----SNASNLELLELAGNQFEGKVSID--F-----SSLKNLAVLNLERNNLG 274 (472)
Q Consensus 234 ----~~~~~L~~L~l~~~~~~~~~~~~--l-----~~l~~L~~L~l~~~~~~ 274 (472)
-..|+|..|...+|...+..... + ...|-|..+.+.+|++.
T Consensus 265 ~f~e~~~p~l~~L~~~Yne~~~~~i~~~~l~~~e~~~~p~L~~le~ngNr~~ 316 (388)
T COG5238 265 RFNEKFVPNLMPLPGDYNERRGGIILDISLNEFEQDAVPLLVDLERNGNRIK 316 (388)
T ss_pred HhhhhcCCCccccccchhhhcCceeeeechhhhhhcccHHHHHHHHccCcch
Confidence 23578888888888665332221 1 23566777777777764
No 45
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.50 E-value=1e-08 Score=99.37 Aligned_cols=82 Identities=28% Similarity=0.322 Sum_probs=40.6
Q ss_pred ccEEEeecccccCcccccccCccCcceEeccccccccCcchhhcCCCCCcEEEccCCcCccc---cc-cchhcccccCee
Q 040195 306 MTHFYIGGNQILGIIHFGIRNLVNLIALGMQSNQLHGTIPDVIGELKNLQILSLFGNFLHGS---IP-SSLGNLTKLANL 381 (472)
Q Consensus 306 l~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~L~~n~l~~~---~~-~~l~~~~~L~~L 381 (472)
++.++++++.+.... ..+..+..+..+++.++.+... ..+...+.+..+....+.+... .. ......+.++.+
T Consensus 234 L~~l~l~~n~i~~~~-~~~~~~~~l~~l~~~~n~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (414)
T KOG0531|consen 234 LRELYLSGNRISRSP-EGLENLKNLPVLDLSSNRISNL--EGLERLPKLSELWLNDNKLALSEAISQEYITSAAPTLVTL 310 (414)
T ss_pred HHHHhcccCcccccc-ccccccccccccchhhcccccc--ccccccchHHHhccCcchhcchhhhhcccccccccccccc
Confidence 445555555554321 2344556666666666665532 1223344455555555554311 11 113445666666
Q ss_pred eccCCcccc
Q 040195 382 ELSSNSLQG 390 (472)
Q Consensus 382 ~l~~~~~~~ 390 (472)
.+..+++..
T Consensus 311 ~~~~~~~~~ 319 (414)
T KOG0531|consen 311 TLELNPIRK 319 (414)
T ss_pred ccccCcccc
Confidence 776666553
No 46
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.31 E-value=3.7e-08 Score=75.65 Aligned_cols=128 Identities=20% Similarity=0.271 Sum_probs=66.0
Q ss_pred cceEeccccccccCcch---hhcCCCCCcEEEccCCcCccccccchh-cccccCeeeccCCcccccCCcCccCCCCCceE
Q 040195 330 LIALGMQSNQLHGTIPD---VIGELKNLQILSLFGNFLHGSIPSSLG-NLTKLANLELSSNSLQGNIPLSVGNCQNLIGF 405 (472)
Q Consensus 330 L~~L~l~~~~i~~~~~~---~~~~~~~L~~L~L~~n~l~~~~~~~l~-~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L 405 (472)
+..++|+.|++. .+++ .+.....|+..+|++|.+. .+|..|. .++.++.|++++|.+. .+|..+..++.|+.|
T Consensus 29 ~h~ldLssc~lm-~i~davy~l~~~~el~~i~ls~N~fk-~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~l 105 (177)
T KOG4579|consen 29 LHFLDLSSCQLM-YIADAVYMLSKGYELTKISLSDNGFK-KFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSL 105 (177)
T ss_pred hhhcccccchhh-HHHHHHHHHhCCceEEEEecccchhh-hCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhc
Confidence 344455555444 2222 2233344555566666665 3333333 3456666666666666 555556666666666
Q ss_pred eecCCcccccCChhhhhhcccceEEEcCCCcccccccccccCCCCCceEeccCCeecc
Q 040195 406 DASHITLTGALPQQLLSITTLSLYLDLSHNLLNGSLLLQVGNLKNLILLDISGNQFSG 463 (472)
Q Consensus 406 ~ls~~~~~~~~~~~l~~~~~l~~~L~ls~n~l~~~~~~~l~~~~~L~~L~L~~n~~~~ 463 (472)
++++|++. ..|+-+..+.++. .|+.-+|.+. .++.++-.-...-.+++.++++.+
T Consensus 106 Nl~~N~l~-~~p~vi~~L~~l~-~Lds~~na~~-eid~dl~~s~~~al~~lgnepl~~ 160 (177)
T KOG4579|consen 106 NLRFNPLN-AEPRVIAPLIKLD-MLDSPENARA-EIDVDLFYSSLPALIKLGNEPLGD 160 (177)
T ss_pred ccccCccc-cchHHHHHHHhHH-HhcCCCCccc-cCcHHHhccccHHHHHhcCCcccc
Confidence 66666666 5566666666655 6666666554 222222222333334445555443
No 47
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.31 E-value=1.6e-07 Score=80.79 Aligned_cols=148 Identities=22% Similarity=0.192 Sum_probs=88.6
Q ss_pred ccccCCCCCcEEEccccCCCCCCCc----cccCCCCccEEEecCCcccccc-------------ccccccCCCccEEEcc
Q 040195 128 KEIGSLLKLQTLALYYNNLTGQLPD----FVGNLSALQVIYIRGNSLGGKI-------------PTTLGLLRNLVYLNVN 190 (472)
Q Consensus 128 ~~l~~l~~L~~L~l~~~~i~~~~~~----~l~~~~~L~~L~l~~~~~~~~~-------------~~~l~~~~~L~~L~l~ 190 (472)
.++.+||+|+.++++.|.+....|. .++..+.|++|.+++|.+.-.. ..-...-|.|+++...
T Consensus 86 ~aLlkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicg 165 (388)
T COG5238 86 KALLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICG 165 (388)
T ss_pred HHHhcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEec
Confidence 3455566666666666655544332 2344566677777666543110 0112345778888888
Q ss_pred CCccccccccccccChhhhcCCCCccEEEccccccccc-----CCccCcCCCCCCEEecCCCccccccccc----ccccC
Q 040195 191 ENQFWYVSSFSGSLPFDILVNLPNLKKLCIAENNFVGS-----IPDSLSNASNLELLELAGNQFEGKVSID----FSSLK 261 (472)
Q Consensus 191 ~~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~-----~~~~l~~~~~L~~L~l~~~~~~~~~~~~----l~~l~ 261 (472)
.|++...+. ......+....+|+.+.+.+|.+... ....++.+.+|+.|+++.|-++-..... ++.-+
T Consensus 166 rNRlengs~---~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~ 242 (388)
T COG5238 166 RNRLENGSK---ELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWN 242 (388)
T ss_pred cchhccCcH---HHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccc
Confidence 888755432 22223344456888888888876532 1123467788999999998776544333 33445
Q ss_pred CCCeEEcCCCcCCCCCC
Q 040195 262 NLAVLNLERNNLGIGTA 278 (472)
Q Consensus 262 ~L~~L~l~~~~~~~~~~ 278 (472)
.|+.|++..|-++..+.
T Consensus 243 ~lrEL~lnDClls~~G~ 259 (388)
T COG5238 243 LLRELRLNDCLLSNEGV 259 (388)
T ss_pred hhhhccccchhhccccH
Confidence 68888888888765444
No 48
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.27 E-value=2e-07 Score=81.28 Aligned_cols=113 Identities=22% Similarity=0.286 Sum_probs=66.1
Q ss_pred ccCCCCCcEEEccccCCCCCCCcc-c-cCCCCccEEEecCCcccc--ccccccccCCCccEEEccCCccccccccccccC
Q 040195 130 IGSLLKLQTLALYYNNLTGQLPDF-V-GNLSALQVIYIRGNSLGG--KIPTTLGLLRNLVYLNVNENQFWYVSSFSGSLP 205 (472)
Q Consensus 130 l~~l~~L~~L~l~~~~i~~~~~~~-l-~~~~~L~~L~l~~~~~~~--~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~ 205 (472)
+.....++.+.+.++.|..+.... + ..++.++++++.+|.+.+ .+...+.++|.|+.|+++.|.+...- +.+|
T Consensus 41 v~s~ra~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I---~~lp 117 (418)
T KOG2982|consen 41 VSSLRALELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDI---KSLP 117 (418)
T ss_pred eccccchhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCcc---ccCc
Confidence 334445666777777666433211 2 246778888888887762 22234467888888888888753221 2222
Q ss_pred hhhhcCCCCccEEEccccccccc-CCccCcCCCCCCEEecCCCcc
Q 040195 206 FDILVNLPNLKKLCIAENNFVGS-IPDSLSNASNLELLELAGNQF 249 (472)
Q Consensus 206 ~~~~~~~~~L~~L~l~~~~l~~~-~~~~l~~~~~L~~L~l~~~~~ 249 (472)
....+|+.|.+.+..+.-. ....+..+|.+++|+++.|.+
T Consensus 118 ----~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N~~ 158 (418)
T KOG2982|consen 118 ----LPLKNLRVLVLNGTGLSWTQSTSSLDDLPKVTELHMSDNSL 158 (418)
T ss_pred ----ccccceEEEEEcCCCCChhhhhhhhhcchhhhhhhhccchh
Confidence 1445777777777665431 122345667777777777644
No 49
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.27 E-value=4.1e-07 Score=79.35 Aligned_cols=187 Identities=18% Similarity=0.170 Sum_probs=114.6
Q ss_pred hcCCCCCEEEccCcccCC--CCCcccCCCCCCcEEEcccCcCcccCCccc-cCCCCCcEEEccccCCCCC-CCccccCCC
Q 040195 83 GNLYRLEKLELSNNSFSG--TIPTNLSRCSELTHLRVANNKLEGQIPKEI-GSLLKLQTLALYYNNLTGQ-LPDFVGNLS 158 (472)
Q Consensus 83 ~~l~~L~~L~L~~~~~~~--~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l-~~l~~L~~L~l~~~~i~~~-~~~~l~~~~ 158 (472)
..+..+++++|.+|.+.+ +....+.++|+|++|+++.|++... ...+ ....+|++|.+.++.+... ....+..+|
T Consensus 68 ~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~-I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP 146 (418)
T KOG2982|consen 68 SSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSD-IKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLP 146 (418)
T ss_pred HHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCc-cccCcccccceEEEEEcCCCCChhhhhhhhhcch
Confidence 346678888888887763 1223356788888888888877632 2222 3556788888887776533 233445667
Q ss_pred CccEEEecCCcccccc--ccccccC-CCccEEEccCCccccccccccccChhhhcCCCCccEEEccccccccc-CCccCc
Q 040195 159 ALQVIYIRGNSLGGKI--PTTLGLL-RNLVYLNVNENQFWYVSSFSGSLPFDILVNLPNLKKLCIAENNFVGS-IPDSLS 234 (472)
Q Consensus 159 ~L~~L~l~~~~~~~~~--~~~l~~~-~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~-~~~~l~ 234 (472)
.+++|.++.|.+.... ....... +.++++....|........ -.....+|++..+.+..|++.+. ..+.+.
T Consensus 147 ~vtelHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~-----~~l~r~Fpnv~sv~v~e~PlK~~s~ek~se 221 (418)
T KOG2982|consen 147 KVTELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNK-----NKLSRIFPNVNSVFVCEGPLKTESSEKGSE 221 (418)
T ss_pred hhhhhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHH-----HhHHhhcccchheeeecCcccchhhcccCC
Confidence 7777777777433111 1112211 2455555555532111000 01122468888888888887653 345566
Q ss_pred CCCCCCEEecCCCcccccc-cccccccCCCCeEEcCCCcCCC
Q 040195 235 NASNLELLELAGNQFEGKV-SIDFSSLKNLAVLNLERNNLGI 275 (472)
Q Consensus 235 ~~~~L~~L~l~~~~~~~~~-~~~l~~l~~L~~L~l~~~~~~~ 275 (472)
.+|.+--|+++.+++.+.. .+.+..+++|..|+++++++..
T Consensus 222 ~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d 263 (418)
T KOG2982|consen 222 PFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLSD 263 (418)
T ss_pred CCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCcccc
Confidence 7788888999998886542 3357888999999999998863
No 50
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.25 E-value=1.9e-08 Score=97.56 Aligned_cols=126 Identities=30% Similarity=0.337 Sum_probs=63.5
Q ss_pred CcceEeccccccccCcchhhcCCCCCcEEEccCCcCccccccchhcccccCeeeccCCcccccCCcCccCCCCCceEeec
Q 040195 329 NLIALGMQSNQLHGTIPDVIGELKNLQILSLFGNFLHGSIPSSLGNLTKLANLELSSNSLQGNIPLSVGNCQNLIGFDAS 408 (472)
Q Consensus 329 ~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ls 408 (472)
.|...+++.|.+. ..-..+.-++.|+.|+|++|++.+.. .+..++.|++|+|+.|.+...-......|. |..|+++
T Consensus 165 ~L~~a~fsyN~L~-~mD~SLqll~ale~LnLshNk~~~v~--~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~-L~~L~lr 240 (1096)
T KOG1859|consen 165 KLATASFSYNRLV-LMDESLQLLPALESLNLSHNKFTKVD--NLRRLPKLKHLDLSYNCLRHVPQLSMVGCK-LQLLNLR 240 (1096)
T ss_pred hHhhhhcchhhHH-hHHHHHHHHHHhhhhccchhhhhhhH--HHHhcccccccccccchhccccccchhhhh-heeeeec
Confidence 3444555555544 22233444556666666666665322 455566666666666665522222222333 6666666
Q ss_pred CCcccccCChhhhhhcccceEEEcCCCccccc-ccccccCCCCCceEeccCCee
Q 040195 409 HITLTGALPQQLLSITTLSLYLDLSHNLLNGS-LLLQVGNLKNLILLDISGNQF 461 (472)
Q Consensus 409 ~~~~~~~~~~~l~~~~~l~~~L~ls~n~l~~~-~~~~l~~~~~L~~L~L~~n~~ 461 (472)
+|.++ + ...+.++.+|+ -||+++|-+.+- -..-+..+.+|+.|.|.||++
T Consensus 241 nN~l~-t-L~gie~LksL~-~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl 291 (1096)
T KOG1859|consen 241 NNALT-T-LRGIENLKSLY-GLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPL 291 (1096)
T ss_pred ccHHH-h-hhhHHhhhhhh-ccchhHhhhhcchhhhHHHHHHHHHHHhhcCCcc
Confidence 66654 2 23455556666 666666655431 112223334566666666654
No 51
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.22 E-value=3.6e-08 Score=89.68 Aligned_cols=134 Identities=24% Similarity=0.245 Sum_probs=75.7
Q ss_pred CccCcceEeccccc-cccCcchhh-cCCCCCcEEEccCCc-Cccccccchh-cccccCeeeccCCcccc--cCCcCccCC
Q 040195 326 NLVNLIALGMQSNQ-LHGTIPDVI-GELKNLQILSLFGNF-LHGSIPSSLG-NLTKLANLELSSNSLQG--NIPLSVGNC 399 (472)
Q Consensus 326 ~~~~L~~L~l~~~~-i~~~~~~~~-~~~~~L~~L~L~~n~-l~~~~~~~l~-~~~~L~~L~l~~~~~~~--~~~~~~~~~ 399 (472)
.+..|+.++.+++. +.+....++ ..+.+|+.+.++.|+ +++.-...+. .++.|+.+++.+|.... .+.....+|
T Consensus 292 ~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C 371 (483)
T KOG4341|consen 292 GCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNC 371 (483)
T ss_pred hhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCC
Confidence 35566777776653 332222222 345777777777775 3332222232 45677777777775442 233444567
Q ss_pred CCCceEeecCCcc-cccCC----hhhhhhcccceEEEcCCC-cccccccccccCCCCCceEeccCCe
Q 040195 400 QNLIGFDASHITL-TGALP----QQLLSITTLSLYLDLSHN-LLNGSLLLQVGNLKNLILLDISGNQ 460 (472)
Q Consensus 400 ~~L~~L~ls~~~~-~~~~~----~~l~~~~~l~~~L~ls~n-~l~~~~~~~l~~~~~L~~L~L~~n~ 460 (472)
+.|+.+.+++|.. ++.-. ..-.+...+. .+.++++ .+++...+.+..+++|+.+++-++.
T Consensus 372 ~~lr~lslshce~itD~gi~~l~~~~c~~~~l~-~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q 437 (483)
T KOG4341|consen 372 PRLRVLSLSHCELITDEGIRHLSSSSCSLEGLE-VLELDNCPLITDATLEHLSICRNLERIELIDCQ 437 (483)
T ss_pred chhccCChhhhhhhhhhhhhhhhhccccccccc-eeeecCCCCchHHHHHHHhhCcccceeeeechh
Confidence 7777777777743 32211 1123344455 6777776 4455566667777777777777663
No 52
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.21 E-value=2.7e-08 Score=90.48 Aligned_cols=157 Identities=17% Similarity=0.086 Sum_probs=74.2
Q ss_pred CCcEEEcccCcCccc--CCccccCCCCCcEEEccccC-CCCCCCcccc-CCCCccEEEecCC-cccccccccc-ccCCCc
Q 040195 111 ELTHLRVANNKLEGQ--IPKEIGSLLKLQTLALYYNN-LTGQLPDFVG-NLSALQVIYIRGN-SLGGKIPTTL-GLLRNL 184 (472)
Q Consensus 111 ~L~~L~l~~~~~~~~--~~~~l~~l~~L~~L~l~~~~-i~~~~~~~l~-~~~~L~~L~l~~~-~~~~~~~~~l-~~~~~L 184 (472)
.|+.|.+.++.-.+. .-....++|++++|.+.++. +++.....++ .+++|+++++..| .++......+ ..+++|
T Consensus 139 ~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL 218 (483)
T KOG4341|consen 139 FLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKL 218 (483)
T ss_pred ccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhH
Confidence 566677776654321 11233456777777777664 2222222222 4677777777774 3443333322 356777
Q ss_pred cEEEccCCccccccccccccChhhhcCCCCccEEEccccccccc--CCccCcCCCCCCEEecCCC-cccccccccc-ccc
Q 040195 185 VYLNVNENQFWYVSSFSGSLPFDILVNLPNLKKLCIAENNFVGS--IPDSLSNASNLELLELAGN-QFEGKVSIDF-SSL 260 (472)
Q Consensus 185 ~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~--~~~~l~~~~~L~~L~l~~~-~~~~~~~~~l-~~l 260 (472)
+++++++++--. +.-......++..++.+.+.||.-.+. +...=+.++.+.++++..+ .+++.....+ ..+
T Consensus 219 ~~lNlSwc~qi~-----~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c 293 (483)
T KOG4341|consen 219 KYLNLSWCPQIS-----GNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGC 293 (483)
T ss_pred HHhhhccCchhh-----cCcchHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHHHhhhh
Confidence 777777775211 111112334455555665555432110 0001134455555555554 2232221111 234
Q ss_pred CCCCeEEcCCCc
Q 040195 261 KNLAVLNLERNN 272 (472)
Q Consensus 261 ~~L~~L~l~~~~ 272 (472)
..|+.+..+++.
T Consensus 294 ~~lq~l~~s~~t 305 (483)
T KOG4341|consen 294 HALQVLCYSSCT 305 (483)
T ss_pred hHhhhhcccCCC
Confidence 555666555543
No 53
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.18 E-value=1.2e-08 Score=99.03 Aligned_cols=178 Identities=24% Similarity=0.262 Sum_probs=81.3
Q ss_pred CccccCCCCccEEeccCCcCccCcchhhhcC-CCCCEEEccCcc--cC-------CCCCcccCCCCCCcEEEcccCcCcc
Q 040195 55 SPYVGNLSFLRYINLSDNGFHGEIPQEIGNL-YRLEKLELSNNS--FS-------GTIPTNLSRCSELTHLRVANNKLEG 124 (472)
Q Consensus 55 ~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~l-~~L~~L~L~~~~--~~-------~~~~~~l~~l~~L~~L~l~~~~~~~ 124 (472)
+-.+..|++||+|.+.++++.. ..++..+ .+|++|...+.- +. +.....+. --.|.+.+++.|.+.
T Consensus 102 pi~ifpF~sLr~LElrg~~L~~--~~GL~~lr~qLe~LIC~~Sl~Al~~v~ascggd~~ns~~-Wn~L~~a~fsyN~L~- 177 (1096)
T KOG1859|consen 102 PISIFPFRSLRVLELRGCDLST--AKGLQELRHQLEKLICHNSLDALRHVFASCGGDISNSPV-WNKLATASFSYNRLV- 177 (1096)
T ss_pred CceeccccceeeEEecCcchhh--hhhhHHHHHhhhhhhhhccHHHHHHHHHHhccccccchh-hhhHhhhhcchhhHH-
Confidence 4556778889999998887653 1222222 234444333210 00 00000000 024445555555554
Q ss_pred cCCccccCCCCCcEEEccccCCCCCCCccccCCCCccEEEecCCccccccccc-cccCCCccEEEccCCccccccccccc
Q 040195 125 QIPKEIGSLLKLQTLALYYNNLTGQLPDFVGNLSALQVIYIRGNSLGGKIPTT-LGLLRNLVYLNVNENQFWYVSSFSGS 203 (472)
Q Consensus 125 ~~~~~l~~l~~L~~L~l~~~~i~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~-l~~~~~L~~L~l~~~~l~~~~~~~~~ 203 (472)
.+...+.-++.|++|++++|+++.. ..+..+++|++|++++|.+. .+|.. ...+ +|+.|++++|.++..-+
T Consensus 178 ~mD~SLqll~ale~LnLshNk~~~v--~~Lr~l~~LkhLDlsyN~L~-~vp~l~~~gc-~L~~L~lrnN~l~tL~g---- 249 (1096)
T KOG1859|consen 178 LMDESLQLLPALESLNLSHNKFTKV--DNLRRLPKLKHLDLSYNCLR-HVPQLSMVGC-KLQLLNLRNNALTTLRG---- 249 (1096)
T ss_pred hHHHHHHHHHHhhhhccchhhhhhh--HHHHhcccccccccccchhc-cccccchhhh-hheeeeecccHHHhhhh----
Confidence 3334444455566666666655422 24555556666666665554 22211 1112 25555555555432211
Q ss_pred cChhhhcCCCCccEEEcccccccccC-CccCcCCCCCCEEecCCCcc
Q 040195 204 LPFDILVNLPNLKKLCIAENNFVGSI-PDSLSNASNLELLELAGNQF 249 (472)
Q Consensus 204 ~~~~~~~~~~~L~~L~l~~~~l~~~~-~~~l~~~~~L~~L~l~~~~~ 249 (472)
+.++.+|+.||+++|-+.+.- ...+..+..|+.|.+.+|++
T Consensus 250 -----ie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl 291 (1096)
T KOG1859|consen 250 -----IENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPL 291 (1096)
T ss_pred -----HHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCcc
Confidence 224455555555555544311 01123344455555555544
No 54
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.13 E-value=1.3e-07 Score=72.69 Aligned_cols=137 Identities=15% Similarity=0.190 Sum_probs=100.7
Q ss_pred cccEEEeecccccCc--ccccccCccCcceEeccccccccCcchhhcCCCCCcEEEccCCcCccccccchhcccccCeee
Q 040195 305 TMTHFYIGGNQILGI--IHFGIRNLVNLIALGMQSNQLHGTIPDVIGELKNLQILSLFGNFLHGSIPSSLGNLTKLANLE 382 (472)
Q Consensus 305 ~l~~l~l~~~~~~~~--~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~ 382 (472)
.+..+++++|.+..+ ....+.....|...+|++|.+.+..+..-.+++.++.|++++|.+. .+|+.+..++.|+.|+
T Consensus 28 E~h~ldLssc~lm~i~davy~l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~lN 106 (177)
T KOG4579|consen 28 ELHFLDLSSCQLMYIADAVYMLSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSLN 106 (177)
T ss_pred HhhhcccccchhhHHHHHHHHHhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhcc
Confidence 456778888877643 2334566678889999999999666666667789999999999998 6777799999999999
Q ss_pred ccCCcccccCCcCccCCCCCceEeecCCcccccCChhhhhhcccceEEEcCCCcccccccccc
Q 040195 383 LSSNSLQGNIPLSVGNCQNLIGFDASHITLTGALPQQLLSITTLSLYLDLSHNLLNGSLLLQV 445 (472)
Q Consensus 383 l~~~~~~~~~~~~~~~~~~L~~L~ls~~~~~~~~~~~l~~~~~l~~~L~ls~n~l~~~~~~~l 445 (472)
++.|++. ..|..+..+.+|-.|+..+|... .++-.+...+..- ...+.++.+.+.-+..+
T Consensus 107 l~~N~l~-~~p~vi~~L~~l~~Lds~~na~~-eid~dl~~s~~~a-l~~lgnepl~~~~~~kl 166 (177)
T KOG4579|consen 107 LRFNPLN-AEPRVIAPLIKLDMLDSPENARA-EIDVDLFYSSLPA-LIKLGNEPLGDETKKKL 166 (177)
T ss_pred cccCccc-cchHHHHHHHhHHHhcCCCCccc-cCcHHHhccccHH-HHHhcCCcccccCcccc
Confidence 9999998 56666777889999999999876 5554433322222 34555566665444333
No 55
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.90 E-value=2e-05 Score=65.11 Aligned_cols=107 Identities=21% Similarity=0.198 Sum_probs=82.5
Q ss_pred cccEEEeecccccCcccccccCccCcceEeccccccccCcchhhcCCCCCcEEEccCCcCccc-cccchhcccccCeeec
Q 040195 305 TMTHFYIGGNQILGIIHFGIRNLVNLIALGMQSNQLHGTIPDVIGELKNLQILSLFGNFLHGS-IPSSLGNLTKLANLEL 383 (472)
Q Consensus 305 ~l~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~L~~n~l~~~-~~~~l~~~~~L~~L~l 383 (472)
+...+++++|.+... ..|..++.|.+|.+.+|.|+...|..-..+++|+.|.+.+|.+... ....+..+|.|++|.+
T Consensus 43 ~~d~iDLtdNdl~~l--~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltl 120 (233)
T KOG1644|consen 43 QFDAIDLTDNDLRKL--DNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTL 120 (233)
T ss_pred ccceecccccchhhc--ccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceeee
Confidence 567788888887754 3577889999999999999977776656678999999999987532 2335678899999999
Q ss_pred cCCcccccCC---cCccCCCCCceEeecCCccc
Q 040195 384 SSNSLQGNIP---LSVGNCQNLIGFDASHITLT 413 (472)
Q Consensus 384 ~~~~~~~~~~---~~~~~~~~L~~L~ls~~~~~ 413 (472)
-+|+++..-. ..+..+|+|+.||+++-.-.
T Consensus 121 l~Npv~~k~~YR~yvl~klp~l~~LDF~kVt~~ 153 (233)
T KOG1644|consen 121 LGNPVEHKKNYRLYVLYKLPSLRTLDFQKVTRK 153 (233)
T ss_pred cCCchhcccCceeEEEEecCcceEeehhhhhHH
Confidence 9999885422 23567899999999987553
No 56
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.90 E-value=2.7e-06 Score=86.40 Aligned_cols=134 Identities=22% Similarity=0.284 Sum_probs=72.2
Q ss_pred CceEEEECCCCc-cCcccCcccc-CCCCccEEeccCCcCcc-CcchhhhcCCCCCEEEccCcccCCCCCcccCCCCCCcE
Q 040195 38 QRVTELDLSNQR-IGGVLSPYVG-NLSFLRYINLSDNGFHG-EIPQEIGNLYRLEKLELSNNSFSGTIPTNLSRCSELTH 114 (472)
Q Consensus 38 ~~l~~L~l~~~~-~~~~~~~~l~-~~~~L~~L~L~~~~~~~-~~~~~~~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~ 114 (472)
.++++|+++|.. +....+..++ .+|+|+.|.+.+-.+.. .......++|+|..||+++++++.. ..++++++|++
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS~LknLq~ 199 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL--SGISRLKNLQV 199 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc--HHHhccccHHH
Confidence 556677776643 3333333333 45677777776654432 2233445667777777777766533 45666677777
Q ss_pred EEcccCcCcc-cCCccccCCCCCcEEEccccCCCCCC------CccccCCCCccEEEecCCccccc
Q 040195 115 LRVANNKLEG-QIPKEIGSLLKLQTLALYYNNLTGQL------PDFVGNLSALQVIYIRGNSLGGK 173 (472)
Q Consensus 115 L~l~~~~~~~-~~~~~l~~l~~L~~L~l~~~~i~~~~------~~~l~~~~~L~~L~l~~~~~~~~ 173 (472)
|.+.+-.+.. .....+.++++|++||++........ .+.-..+|.|+.|+.+++.+.+.
T Consensus 200 L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~ 265 (699)
T KOG3665|consen 200 LSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEE 265 (699)
T ss_pred HhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHH
Confidence 6666655542 22234556677777777654433111 01112356666666666655543
No 57
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.84 E-value=1.5e-05 Score=49.41 Aligned_cols=37 Identities=41% Similarity=0.510 Sum_probs=21.3
Q ss_pred ccceEEEcCCCcccccccccccCCCCCceEeccCCeecc
Q 040195 425 TLSLYLDLSHNLLNGSLLLQVGNLKNLILLDISGNQFSG 463 (472)
Q Consensus 425 ~l~~~L~ls~n~l~~~~~~~l~~~~~L~~L~L~~n~~~~ 463 (472)
+|+ +|++++|++++ ++..+.++++|+.|++++|++++
T Consensus 2 ~L~-~L~l~~N~i~~-l~~~l~~l~~L~~L~l~~N~i~~ 38 (44)
T PF12799_consen 2 NLE-ELDLSNNQITD-LPPELSNLPNLETLNLSNNPISD 38 (44)
T ss_dssp T-S-EEEETSSS-SS-HGGHGTTCTTSSEEEETSSCCSB
T ss_pred cce-EEEccCCCCcc-cCchHhCCCCCCEEEecCCCCCC
Confidence 344 66666666663 34446666666666666666653
No 58
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=97.83 E-value=6e-05 Score=60.10 Aligned_cols=123 Identities=15% Similarity=0.162 Sum_probs=47.1
Q ss_pred ccccCccCcceEeccccccccCcchhhcCCCCCcEEEccCCcCccccccchhcccccCeeeccCCcccccCCcCccCCCC
Q 040195 322 FGIRNLVNLIALGMQSNQLHGTIPDVIGELKNLQILSLFGNFLHGSIPSSLGNLTKLANLELSSNSLQGNIPLSVGNCQN 401 (472)
Q Consensus 322 ~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 401 (472)
..|..+++|+.+.+.+ .+......+|..+++|+.+.+.++ +......+|..++.|+.+.+.+ .+.......+..++.
T Consensus 6 ~~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~ 82 (129)
T PF13306_consen 6 NAFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTN 82 (129)
T ss_dssp TTTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TT
T ss_pred HHHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-ccccccccccccccc
Confidence 3455556666666653 344344445666666666666554 4333444555555666666654 332223344555666
Q ss_pred CceEeecCCcccccCChhhhhhcccceEEEcCCCcccccccccccCCCCC
Q 040195 402 LIGFDASHITLTGALPQQLLSITTLSLYLDLSHNLLNGSLLLQVGNLKNL 451 (472)
Q Consensus 402 L~~L~ls~~~~~~~~~~~l~~~~~l~~~L~ls~n~l~~~~~~~l~~~~~L 451 (472)
|+.+.+..+ +...-...+.++ .++ .+.+.+ .+.......|.++++|
T Consensus 83 l~~i~~~~~-~~~i~~~~f~~~-~l~-~i~~~~-~~~~i~~~~F~~~~~l 128 (129)
T PF13306_consen 83 LKNIDIPSN-ITEIGSSSFSNC-NLK-EINIPS-NITKIEENAFKNCTKL 128 (129)
T ss_dssp ECEEEETTT--BEEHTTTTTT--T---EEE-TT-B-SS----GGG-----
T ss_pred ccccccCcc-ccEEchhhhcCC-Cce-EEEECC-CccEECCccccccccC
Confidence 666666543 321112334443 555 555554 2222334555555554
No 59
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=97.77 E-value=8.8e-05 Score=59.14 Aligned_cols=60 Identities=18% Similarity=0.231 Sum_probs=20.1
Q ss_pred cccCCCCccEEeccCCcCccCcchhhhcCCCCCEEEccCcccCCCCCcccCCCCCCcEEEcc
Q 040195 57 YVGNLSFLRYINLSDNGFHGEIPQEIGNLYRLEKLELSNNSFSGTIPTNLSRCSELTHLRVA 118 (472)
Q Consensus 57 ~l~~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~ 118 (472)
.|..+.+|+.+.+.. .+..+...+|.++++|+.+.+.++ +.......|..++.++.+.+.
T Consensus 7 ~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~ 66 (129)
T PF13306_consen 7 AFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFP 66 (129)
T ss_dssp TTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEET
T ss_pred HHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeeccccccccccc
Confidence 344444444444442 222233334444444444444432 222223334444444444443
No 60
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.76 E-value=0.0001 Score=69.21 Aligned_cols=31 Identities=19% Similarity=0.232 Sum_probs=14.5
Q ss_pred CCCCCEEecCCCcccccccccccccC-CCCeEEcCCC
Q 040195 236 ASNLELLELAGNQFEGKVSIDFSSLK-NLAVLNLERN 271 (472)
Q Consensus 236 ~~~L~~L~l~~~~~~~~~~~~l~~l~-~L~~L~l~~~ 271 (472)
+.+++.|++++|.++ .+..+| +|+.|.+++|
T Consensus 51 ~~~l~~L~Is~c~L~-----sLP~LP~sLtsL~Lsnc 82 (426)
T PRK15386 51 ARASGRLYIKDCDIE-----SLPVLPNELTEITIENC 82 (426)
T ss_pred hcCCCEEEeCCCCCc-----ccCCCCCCCcEEEccCC
Confidence 355555555555322 333333 3555555543
No 61
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.73 E-value=7.1e-05 Score=61.99 Aligned_cols=12 Identities=17% Similarity=0.296 Sum_probs=5.6
Q ss_pred cCCCCCCEEecC
Q 040195 234 SNASNLELLELA 245 (472)
Q Consensus 234 ~~~~~L~~L~l~ 245 (472)
..+|+|+.|+.+
T Consensus 137 ~klp~l~~LDF~ 148 (233)
T KOG1644|consen 137 YKLPSLRTLDFQ 148 (233)
T ss_pred EecCcceEeehh
Confidence 344445554444
No 62
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.70 E-value=0.00017 Score=67.79 Aligned_cols=72 Identities=17% Similarity=0.264 Sum_probs=48.2
Q ss_pred ccccEEEeecccccCcccccccCccCcceEeccccccccCcchhhcCCCCCcEEEccCC-cCccccccchhcccccCeee
Q 040195 304 STMTHFYIGGNQILGIIHFGIRNLVNLIALGMQSNQLHGTIPDVIGELKNLQILSLFGN-FLHGSIPSSLGNLTKLANLE 382 (472)
Q Consensus 304 ~~l~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~L~~n-~l~~~~~~~l~~~~~L~~L~ 382 (472)
.+++.|++++|.++.+. .+ -++|++|+++++.-....|..+ .++|+.|++++| .+. .+| +.|+.|+
T Consensus 52 ~~l~~L~Is~c~L~sLP--~L--P~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~-sLP------~sLe~L~ 118 (426)
T PRK15386 52 RASGRLYIKDCDIESLP--VL--PNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEIS-GLP------ESVRSLE 118 (426)
T ss_pred cCCCEEEeCCCCCcccC--CC--CCCCcEEEccCCCCcccCCchh--hhhhhheEccCccccc-ccc------cccceEE
Confidence 47889999999777653 22 2469999998864444556544 368999999988 443 344 3466666
Q ss_pred ccCCcc
Q 040195 383 LSSNSL 388 (472)
Q Consensus 383 l~~~~~ 388 (472)
+.++..
T Consensus 119 L~~n~~ 124 (426)
T PRK15386 119 IKGSAT 124 (426)
T ss_pred eCCCCC
Confidence 665543
No 63
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.70 E-value=1.8e-05 Score=80.53 Aligned_cols=150 Identities=19% Similarity=0.216 Sum_probs=97.0
Q ss_pred cccEEEeeccccc-Ccccccc-cCccCcceEeccccccccC-cchhhcCCCCCcEEEccCCcCccccccchhcccccCee
Q 040195 305 TMTHFYIGGNQIL-GIIHFGI-RNLVNLIALGMQSNQLHGT-IPDVIGELKNLQILSLFGNFLHGSIPSSLGNLTKLANL 381 (472)
Q Consensus 305 ~l~~l~l~~~~~~-~~~~~~l-~~~~~L~~L~l~~~~i~~~-~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L 381 (472)
+|+.|+++|...- .-.+..+ .-+|+|+.|.+++-.+... ......++++|..||+++++++.. .+++.+++|+.|
T Consensus 123 nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS~LknLq~L 200 (699)
T KOG3665|consen 123 NLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL--SGISRLKNLQVL 200 (699)
T ss_pred hhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc--HHHhccccHHHH
Confidence 7888888774332 1122222 2468889998888766432 233456788999999999988744 677888888888
Q ss_pred eccCCcccc-cCCcCccCCCCCceEeecCCcccccC------ChhhhhhcccceEEEcCCCccccccccccc-CCCCCce
Q 040195 382 ELSSNSLQG-NIPLSVGNCQNLIGFDASHITLTGAL------PQQLLSITTLSLYLDLSHNLLNGSLLLQVG-NLKNLIL 453 (472)
Q Consensus 382 ~l~~~~~~~-~~~~~~~~~~~L~~L~ls~~~~~~~~------~~~l~~~~~l~~~L~ls~n~l~~~~~~~l~-~~~~L~~ 453 (472)
.+.+-.+.. .....+..+++|+.||+|.....+.. .+.-..+|.|+ .||.|++.+.+...+.+. .-++|+.
T Consensus 201 ~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLr-fLDcSgTdi~~~~le~ll~sH~~L~~ 279 (699)
T KOG3665|consen 201 SMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELR-FLDCSGTDINEEILEELLNSHPNLQQ 279 (699)
T ss_pred hccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCcccc-EEecCCcchhHHHHHHHHHhCccHhh
Confidence 888877763 22234667888999999887654211 12233367788 888888888765444433 3355555
Q ss_pred Eecc
Q 040195 454 LDIS 457 (472)
Q Consensus 454 L~L~ 457 (472)
+..-
T Consensus 280 i~~~ 283 (699)
T KOG3665|consen 280 IAAL 283 (699)
T ss_pred hhhh
Confidence 5433
No 64
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.66 E-value=5e-05 Score=47.10 Aligned_cols=36 Identities=28% Similarity=0.492 Sum_probs=16.1
Q ss_pred ccCeeeccCCcccccCCcCccCCCCCceEeecCCccc
Q 040195 377 KLANLELSSNSLQGNIPLSVGNCQNLIGFDASHITLT 413 (472)
Q Consensus 377 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ls~~~~~ 413 (472)
+|++|++++|+++ .++..+..+++|+.|++++|+++
T Consensus 2 ~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 2 NLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp T-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred cceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence 4455555555554 33333444445555555544444
No 65
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=97.26 E-value=2.5e-05 Score=77.94 Aligned_cols=176 Identities=20% Similarity=0.148 Sum_probs=98.5
Q ss_pred hcCCCCCEEEccCcccCCC--CCcccCCCCCCcEEEcccC-cCcccCC----ccccCCCCCcEEEccccC-CCCCCCccc
Q 040195 83 GNLYRLEKLELSNNSFSGT--IPTNLSRCSELTHLRVANN-KLEGQIP----KEIGSLLKLQTLALYYNN-LTGQLPDFV 154 (472)
Q Consensus 83 ~~l~~L~~L~L~~~~~~~~--~~~~l~~l~~L~~L~l~~~-~~~~~~~----~~l~~l~~L~~L~l~~~~-i~~~~~~~l 154 (472)
..++.|+.+.+.++..... .......++.|+.|+++++ ......+ .....+++|+.++++.+. +++.....+
T Consensus 185 ~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l 264 (482)
T KOG1947|consen 185 SSCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSAL 264 (482)
T ss_pred hhCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHH
Confidence 3468888888877743322 2234567788888888763 2211111 223456788888888877 665555555
Q ss_pred cC-CCCccEEEecCCc-ccccccccc-ccCCCccEEEccCCccccccccccccChhhhcCCCCccEEEcccccccccCCc
Q 040195 155 GN-LSALQVIYIRGNS-LGGKIPTTL-GLLRNLVYLNVNENQFWYVSSFSGSLPFDILVNLPNLKKLCIAENNFVGSIPD 231 (472)
Q Consensus 155 ~~-~~~L~~L~l~~~~-~~~~~~~~l-~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~ 231 (472)
.. +++|++|.+.+|. +++.....+ ..++.|++|+++++.... ..........+++++.|.+....-
T Consensus 265 ~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~-----d~~l~~~~~~c~~l~~l~~~~~~~------ 333 (482)
T KOG1947|consen 265 ASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLT-----DSGLEALLKNCPNLRELKLLSLNG------ 333 (482)
T ss_pred HhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccch-----HHHHHHHHHhCcchhhhhhhhcCC------
Confidence 53 7888888877776 554444333 457789999988776421 111112234466666655443321
Q ss_pred cCcCCCCCCEEecCCCcc---cccccccccccCCCCeEEcCCCcC
Q 040195 232 SLSNASNLELLELAGNQF---EGKVSIDFSSLKNLAVLNLERNNL 273 (472)
Q Consensus 232 ~l~~~~~L~~L~l~~~~~---~~~~~~~l~~l~~L~~L~l~~~~~ 273 (472)
++.++.+.+.+..- ..........++.++.+.+..+..
T Consensus 334 ----c~~l~~~~l~~~~~~~~d~~~~~~~~~~~~l~~~~l~~~~~ 374 (482)
T KOG1947|consen 334 ----CPSLTDLSLSGLLTLTSDDLAELILRSCPKLTDLSLSYCGI 374 (482)
T ss_pred ----CccHHHHHHHHhhccCchhHhHHHHhcCCCcchhhhhhhhc
Confidence 34444444433221 111222345667777777766653
No 66
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=97.18 E-value=0.00021 Score=36.81 Aligned_cols=22 Identities=45% Similarity=0.673 Sum_probs=18.1
Q ss_pred CCceEeccCCeeccccCCccccC
Q 040195 450 NLILLDISGNQFSGVIPVTLSIC 472 (472)
Q Consensus 450 ~L~~L~L~~n~~~~~~p~~~~~~ 472 (472)
+|+.|+|++|+++ .+|..|++|
T Consensus 1 ~L~~Ldls~n~l~-~ip~~~~~l 22 (22)
T PF00560_consen 1 NLEYLDLSGNNLT-SIPSSFSNL 22 (22)
T ss_dssp TESEEEETSSEES-EEGTTTTT-
T ss_pred CccEEECCCCcCE-eCChhhcCC
Confidence 5889999999998 788888876
No 67
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=97.04 E-value=5.2e-05 Score=75.60 Aligned_cols=241 Identities=18% Similarity=0.125 Sum_probs=135.2
Q ss_pred CCCCCCcEEEcccCcCccc--CCccccCCCCCcEEEcccc-CCCCCCC----ccccCCCCccEEEecCCc-ccccccccc
Q 040195 107 SRCSELTHLRVANNKLEGQ--IPKEIGSLLKLQTLALYYN-NLTGQLP----DFVGNLSALQVIYIRGNS-LGGKIPTTL 178 (472)
Q Consensus 107 ~~l~~L~~L~l~~~~~~~~--~~~~l~~l~~L~~L~l~~~-~i~~~~~----~~l~~~~~L~~L~l~~~~-~~~~~~~~l 178 (472)
..++.|+.+.+.++..... .......+++|+.|+++++ ......+ .....+++|+.++++.+. +++.....+
T Consensus 185 ~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l 264 (482)
T KOG1947|consen 185 SSCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSAL 264 (482)
T ss_pred hhCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHH
Confidence 4578999999988854322 2345667899999999873 2111111 223456899999999987 666555555
Q ss_pred cc-CCCccEEEccCCc-cccccccccccChhhhcCCCCccEEEcccccccc--cCCccCcCCCCCCEEecCCCccccccc
Q 040195 179 GL-LRNLVYLNVNENQ-FWYVSSFSGSLPFDILVNLPNLKKLCIAENNFVG--SIPDSLSNASNLELLELAGNQFEGKVS 254 (472)
Q Consensus 179 ~~-~~~L~~L~l~~~~-l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~--~~~~~l~~~~~L~~L~l~~~~~~~~~~ 254 (472)
.. +++|++|.+.++. +.+. -.......+++|++|++++|.... .......++++++.+.+....-
T Consensus 265 ~~~c~~L~~L~l~~c~~lt~~------gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~~~~~~----- 333 (482)
T KOG1947|consen 265 ASRCPNLETLSLSNCSNLTDE------GLVSIAERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKLLSLNG----- 333 (482)
T ss_pred HhhCCCcceEccCCCCccchh------HHHHHHHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhhhhhcCC-----
Confidence 44 8899999987776 3222 123445678999999999887642 1222345577777765443221
Q ss_pred ccccccCCCCeEEcCCCcCCCCCCCCcchhhhhcccCCCcCCchhhhccccccEEEeecccccCcc-cccccCccCcceE
Q 040195 255 IDFSSLKNLAVLNLERNNLGIGTANDLGFVTFLTNCSSLKLPHSIANLSSTMTHFYIGGNQILGII-HFGIRNLVNLIAL 333 (472)
Q Consensus 255 ~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~l~l~~~~~~~~~-~~~l~~~~~L~~L 333 (472)
++.++.+.+..+..... ...........+.++.+.+..+...... ...+..++.|+ .
T Consensus 334 -----c~~l~~~~l~~~~~~~~----------------d~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~l~gc~~l~-~ 391 (482)
T KOG1947|consen 334 -----CPSLTDLSLSGLLTLTS----------------DDLAELILRSCPKLTDLSLSYCGISDLGLELSLRGCPNLT-E 391 (482)
T ss_pred -----CccHHHHHHHHhhccCc----------------hhHhHHHHhcCCCcchhhhhhhhccCcchHHHhcCCcccc-h
Confidence 33344443333221100 0011112222335666666666544333 23445555552 2
Q ss_pred eccccccccCcchhhcCCCCCcEEEccCCcCc-cccccchhc-ccccCeeeccCCccc
Q 040195 334 GMQSNQLHGTIPDVIGELKNLQILSLFGNFLH-GSIPSSLGN-LTKLANLELSSNSLQ 389 (472)
Q Consensus 334 ~l~~~~i~~~~~~~~~~~~~L~~L~L~~n~l~-~~~~~~l~~-~~~L~~L~l~~~~~~ 389 (472)
.+.. .......++.|+++.+... ......... +..++.+++.++...
T Consensus 392 ~l~~---------~~~~~~~l~~L~l~~~~~~t~~~l~~~~~~~~~~~~l~~~~~~~~ 440 (482)
T KOG1947|consen 392 SLEL---------RLCRSDSLRVLNLSDCRLVTDKGLRCLADSCSNLKDLDLSGCRVI 440 (482)
T ss_pred HHHH---------HhccCCccceEecccCccccccchHHHhhhhhccccCCccCcccc
Confidence 1111 1122233788888888643 222222222 677888888888654
No 68
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.00 E-value=1.5e-05 Score=69.18 Aligned_cols=100 Identities=19% Similarity=0.221 Sum_probs=72.0
Q ss_pred CCceEEEECCCCccCcccCccccCCCCccEEeccCCcCccCcchhhhcCCCCCEEEccCcccCCCC-CcccCCCCCCcEE
Q 040195 37 HQRVTELDLSNQRIGGVLSPYVGNLSFLRYINLSDNGFHGEIPQEIGNLYRLEKLELSNNSFSGTI-PTNLSRCSELTHL 115 (472)
Q Consensus 37 ~~~l~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~-~~~l~~l~~L~~L 115 (472)
...++.|++.||.++++ ....+|+.|++|.|+-|.+++. ..+..|.+|++|+|..|.|.+.. ..++.++++|+.|
T Consensus 18 l~~vkKLNcwg~~L~DI--sic~kMp~lEVLsLSvNkIssL--~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~L 93 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLDDI--SICEKMPLLEVLSLSVNKISSL--APLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTL 93 (388)
T ss_pred HHHhhhhcccCCCccHH--HHHHhcccceeEEeeccccccc--hhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhH
Confidence 45677888888888766 3456888899999988888754 34788888888888888776431 2456788888888
Q ss_pred EcccCcCcccCCc-----cccCCCCCcEEE
Q 040195 116 RVANNKLEGQIPK-----EIGSLLKLQTLA 140 (472)
Q Consensus 116 ~l~~~~~~~~~~~-----~l~~l~~L~~L~ 140 (472)
.+..|+..+..+. .+.-+|+|+.||
T Consensus 94 WL~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 94 WLDENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred hhccCCcccccchhHHHHHHHHcccchhcc
Confidence 8888877644332 234467777665
No 69
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.92 E-value=0.00041 Score=60.11 Aligned_cols=88 Identities=22% Similarity=0.236 Sum_probs=54.6
Q ss_pred ccCccCcceEeccccccccCcchhhcCCCCCcEEEccCC--cCccccccchhcccccCeeeccCCcccc-cCCcCccCCC
Q 040195 324 IRNLVNLIALGMQSNQLHGTIPDVIGELKNLQILSLFGN--FLHGSIPSSLGNLTKLANLELSSNSLQG-NIPLSVGNCQ 400 (472)
Q Consensus 324 l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~L~~n--~l~~~~~~~l~~~~~L~~L~l~~~~~~~-~~~~~~~~~~ 400 (472)
...+..|+.+++.+..++.. ..|..+++|+.|.++.| .+...+......+|+|+++++++|++.. .-...+..+.
T Consensus 39 ~d~~~~le~ls~~n~gltt~--~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~ 116 (260)
T KOG2739|consen 39 TDEFVELELLSVINVGLTTL--TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELE 116 (260)
T ss_pred cccccchhhhhhhccceeec--ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhc
Confidence 33455666666666665522 23456778888888888 4544444444556888888888887762 1122344556
Q ss_pred CCceEeecCCccc
Q 040195 401 NLIGFDASHITLT 413 (472)
Q Consensus 401 ~L~~L~ls~~~~~ 413 (472)
+|..|++.+|..+
T Consensus 117 nL~~Ldl~n~~~~ 129 (260)
T KOG2739|consen 117 NLKSLDLFNCSVT 129 (260)
T ss_pred chhhhhcccCCcc
Confidence 6777777777665
No 70
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.64 E-value=6.1e-05 Score=65.50 Aligned_cols=99 Identities=20% Similarity=0.263 Sum_probs=47.9
Q ss_pred CCCCEEEccCcccCCCCCcccCCCCCCcEEEcccCcCcccCCccccCCCCCcEEEccccCCCCCC-CccccCCCCccEEE
Q 040195 86 YRLEKLELSNNSFSGTIPTNLSRCSELTHLRVANNKLEGQIPKEIGSLLKLQTLALYYNNLTGQL-PDFVGNLSALQVIY 164 (472)
Q Consensus 86 ~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~i~~~~-~~~l~~~~~L~~L~ 164 (472)
.+.+.|++.+|.+.++ ....+|+.|++|.++-|+++. ...+..|.+|++|.|+.|.|.+.. ...+.++++|+.|-
T Consensus 19 ~~vkKLNcwg~~L~DI--sic~kMp~lEVLsLSvNkIss--L~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LW 94 (388)
T KOG2123|consen 19 ENVKKLNCWGCGLDDI--SICEKMPLLEVLSLSVNKISS--LAPLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLW 94 (388)
T ss_pred HHhhhhcccCCCccHH--HHHHhcccceeEEeecccccc--chhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHh
Confidence 3445555555555432 223455566666666665542 233555566666666665554211 12233555666665
Q ss_pred ecCCccccccc-----cccccCCCccEEE
Q 040195 165 IRGNSLGGKIP-----TTLGLLRNLVYLN 188 (472)
Q Consensus 165 l~~~~~~~~~~-----~~l~~~~~L~~L~ 188 (472)
|..|.-.+... ..+..+|+|++||
T Consensus 95 L~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 95 LDENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred hccCCcccccchhHHHHHHHHcccchhcc
Confidence 55554332211 2344556666554
No 71
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.53 E-value=0.0015 Score=56.71 Aligned_cols=13 Identities=31% Similarity=0.675 Sum_probs=5.8
Q ss_pred CCccEEEecCCcc
Q 040195 158 SALQVIYIRGNSL 170 (472)
Q Consensus 158 ~~L~~L~l~~~~~ 170 (472)
++|+++++++|++
T Consensus 91 P~l~~l~ls~Nki 103 (260)
T KOG2739|consen 91 PNLKVLNLSGNKI 103 (260)
T ss_pred CceeEEeecCCcc
Confidence 4444444444443
No 72
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.60 E-value=0.002 Score=53.73 Aligned_cols=84 Identities=18% Similarity=0.131 Sum_probs=48.4
Q ss_pred cccEEEeecccccCcccccccCccCcceEeccccc-cccCcchhhc-CCCCCcEEEccCCc-CccccccchhcccccCee
Q 040195 305 TMTHFYIGGNQILGIIHFGIRNLVNLIALGMQSNQ-LHGTIPDVIG-ELKNLQILSLFGNF-LHGSIPSSLGNLTKLANL 381 (472)
Q Consensus 305 ~l~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~-i~~~~~~~~~-~~~~L~~L~L~~n~-l~~~~~~~l~~~~~L~~L 381 (472)
.++.++-+++.|.......+..+++++.|.+.+|. +.+...+.++ -.++|+.|+|++|+ |++....++..+++|+.|
T Consensus 102 ~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L 181 (221)
T KOG3864|consen 102 KIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRL 181 (221)
T ss_pred eEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHH
Confidence 46666666666666655666666666666666663 2222222222 23666677776663 555555566666666666
Q ss_pred eccCCcc
Q 040195 382 ELSSNSL 388 (472)
Q Consensus 382 ~l~~~~~ 388 (472)
.+++-+.
T Consensus 182 ~l~~l~~ 188 (221)
T KOG3864|consen 182 HLYDLPY 188 (221)
T ss_pred HhcCchh
Confidence 6665543
No 73
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=94.48 E-value=0.00017 Score=70.34 Aligned_cols=133 Identities=22% Similarity=0.212 Sum_probs=64.6
Q ss_pred ccEEEeecccccCc----ccccccCccCcceEeccccccccC----cchhhc----CCCCCcEEEccCCcCcccc----c
Q 040195 306 MTHFYIGGNQILGI----IHFGIRNLVNLIALGMQSNQLHGT----IPDVIG----ELKNLQILSLFGNFLHGSI----P 369 (472)
Q Consensus 306 l~~l~l~~~~~~~~----~~~~l~~~~~L~~L~l~~~~i~~~----~~~~~~----~~~~L~~L~L~~n~l~~~~----~ 369 (472)
++.|++..|.++.. ....+.....++.++++.|.+... .+.++. ...++++|.+..|.++... .
T Consensus 146 l~~L~l~~c~l~~~g~~~l~~~L~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~ 225 (478)
T KOG4308|consen 146 LQTLELVSCSLTSEGAAPLAAVLEKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLD 225 (478)
T ss_pred HHHHHhhcccccccchHHHHHHHhcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHH
Confidence 34444444544433 122344456666666666655321 122222 3456667777776665321 1
Q ss_pred cchhcccc-cCeeeccCCccccc----CCcCccCC-CCCceEeecCCccccc----CChhhhhhcccceEEEcCCCcccc
Q 040195 370 SSLGNLTK-LANLELSSNSLQGN----IPLSVGNC-QNLIGFDASHITLTGA----LPQQLLSITTLSLYLDLSHNLLNG 439 (472)
Q Consensus 370 ~~l~~~~~-L~~L~l~~~~~~~~----~~~~~~~~-~~L~~L~ls~~~~~~~----~~~~l~~~~~l~~~L~ls~n~l~~ 439 (472)
..+...+. +.++++..|.+.+. ....+..+ ..++.++++.|.+.+. +...+..++.++ .+.+++|.+.+
T Consensus 226 ~~l~~~~~~~~el~l~~n~l~d~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~-~l~l~~n~l~~ 304 (478)
T KOG4308|consen 226 EVLASGESLLRELDLASNKLGDVGVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLE-ELSLSNNPLTD 304 (478)
T ss_pred HHHhccchhhHHHHHHhcCcchHHHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHH-HhhcccCcccc
Confidence 22333344 55566666665532 12223333 4556666666666522 223344445455 56666666553
No 74
>PF08263 LRRNT_2: Leucine rich repeat N-terminal domain; InterPro: IPR013210 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This domain is often found at the N terminus of tandem leucine rich repeats.; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1OGQ_A.
Probab=94.36 E-value=0.034 Score=34.22 Aligned_cols=24 Identities=63% Similarity=1.289 Sum_probs=17.1
Q ss_pred CCCCCCCCCCCC--CCcccccceeeC
Q 040195 11 DPSGVTSSWNNT--INLCQWMGVTCG 34 (472)
Q Consensus 11 ~~~~~~~~~~~~--~~~~~~~~~~~~ 34 (472)
++.+.+.+|+.. .++|.|.||.|.
T Consensus 18 ~~~~~l~~W~~~~~~~~C~W~GV~Cd 43 (43)
T PF08263_consen 18 DPSGVLSSWNPSSDSDPCSWSGVTCD 43 (43)
T ss_dssp SC-CCCTT--TT--S-CCCSTTEEE-
T ss_pred ccCcccccCCCcCCCCCeeeccEEeC
Confidence 567899999987 799999999993
No 75
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.26 E-value=0.006 Score=50.93 Aligned_cols=83 Identities=16% Similarity=0.160 Sum_probs=50.5
Q ss_pred CceEEEECCCCccCcccCccccCCCCccEEeccCCcCcc-Ccchhhh-cCCCCCEEEccCc-ccCCCCCcccCCCCCCcE
Q 040195 38 QRVTELDLSNQRIGGVLSPYVGNLSFLRYINLSDNGFHG-EIPQEIG-NLYRLEKLELSNN-SFSGTIPTNLSRCSELTH 114 (472)
Q Consensus 38 ~~l~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~-~~~~~~~-~l~~L~~L~L~~~-~~~~~~~~~l~~l~~L~~ 114 (472)
..++.+|.+++.|.......+..++.++.|.+.+|.--+ ...+.+. -.++|+.|++++| .|++.....+..+++|+.
T Consensus 101 ~~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~ 180 (221)
T KOG3864|consen 101 VKIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRR 180 (221)
T ss_pred ceEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHH
Confidence 557788888888877776777777777878777775322 1111222 2466777777766 344333444555566666
Q ss_pred EEcccC
Q 040195 115 LRVANN 120 (472)
Q Consensus 115 L~l~~~ 120 (472)
|.+.+-
T Consensus 181 L~l~~l 186 (221)
T KOG3864|consen 181 LHLYDL 186 (221)
T ss_pred HHhcCc
Confidence 655443
No 76
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=94.21 E-value=0.028 Score=26.69 Aligned_cols=14 Identities=43% Similarity=0.629 Sum_probs=7.7
Q ss_pred CCCceEeccCCeec
Q 040195 449 KNLILLDISGNQFS 462 (472)
Q Consensus 449 ~~L~~L~L~~n~~~ 462 (472)
++|+.|+|++|+++
T Consensus 1 ~~L~~L~l~~n~L~ 14 (17)
T PF13504_consen 1 PNLRTLDLSNNRLT 14 (17)
T ss_dssp TT-SEEEETSS--S
T ss_pred CccCEEECCCCCCC
Confidence 36777777777764
No 77
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=93.96 E-value=0.028 Score=28.76 Aligned_cols=8 Identities=25% Similarity=0.002 Sum_probs=2.9
Q ss_pred eEeecCCc
Q 040195 404 GFDASHIT 411 (472)
Q Consensus 404 ~L~ls~~~ 411 (472)
+|++++|.
T Consensus 4 ~Ldls~n~ 11 (22)
T PF00560_consen 4 YLDLSGNN 11 (22)
T ss_dssp EEEETSSE
T ss_pred EEECCCCc
Confidence 33333333
No 78
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=93.81 E-value=0.0097 Score=31.27 Aligned_cols=22 Identities=36% Similarity=0.380 Sum_probs=12.9
Q ss_pred CCCceEeccCCeeccccCCccc
Q 040195 449 KNLILLDISGNQFSGVIPVTLS 470 (472)
Q Consensus 449 ~~L~~L~L~~n~~~~~~p~~~~ 470 (472)
++|+.|+|++|++++..+..++
T Consensus 2 ~~L~~L~l~~n~i~~~g~~~l~ 23 (24)
T PF13516_consen 2 PNLETLDLSNNQITDEGASALA 23 (24)
T ss_dssp TT-SEEE-TSSBEHHHHHHHHH
T ss_pred CCCCEEEccCCcCCHHHHHHhC
Confidence 5677777777777766555443
No 79
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=93.03 E-value=0.00076 Score=65.86 Aligned_cols=158 Identities=23% Similarity=0.212 Sum_probs=79.2
Q ss_pred cccEEEeecccccCcccc----cccCc-cCcceEeccccccccCc----chhhcCCCCCcEEEccCCcCccc----cccc
Q 040195 305 TMTHFYIGGNQILGIIHF----GIRNL-VNLIALGMQSNQLHGTI----PDVIGELKNLQILSLFGNFLHGS----IPSS 371 (472)
Q Consensus 305 ~l~~l~l~~~~~~~~~~~----~l~~~-~~L~~L~l~~~~i~~~~----~~~~~~~~~L~~L~L~~n~l~~~----~~~~ 371 (472)
.++.++++++.+...... .+... ..++.|.+..|.++... .+.+.....++.++++.|.+... .+..
T Consensus 116 ~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L~~~~~l~~l~l~~n~l~~~g~~~l~~~ 195 (478)
T KOG4308|consen 116 TLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVLEKNEHLTELDLSLNGLIELGLLVLSQA 195 (478)
T ss_pred cHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHHhcccchhHHHHHhcccchhhhHHHhhh
Confidence 555666666655532111 11221 34455555555555432 23444556666666666665311 1222
Q ss_pred hh----cccccCeeeccCCccccc----CCcCccCCCC-CceEeecCCcccccC----Chhhhhh-cccceEEEcCCCcc
Q 040195 372 LG----NLTKLANLELSSNSLQGN----IPLSVGNCQN-LIGFDASHITLTGAL----PQQLLSI-TTLSLYLDLSHNLL 437 (472)
Q Consensus 372 l~----~~~~L~~L~l~~~~~~~~----~~~~~~~~~~-L~~L~ls~~~~~~~~----~~~l~~~-~~l~~~L~ls~n~l 437 (472)
+. ...++++|.+++|.++.. +...+...++ ++.+++..|.+.+.. ...+..+ ..++ .++++.|.+
T Consensus 196 l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d~g~~~L~~~l~~~~~~l~-~l~l~~nsi 274 (478)
T KOG4308|consen 196 LESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGDVGVEKLLPCLSVLSETLR-VLDLSRNSI 274 (478)
T ss_pred hhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcchHHHHHHHHHhcccchhhh-hhhhhcCCc
Confidence 22 345666666666665521 2233344444 556666666665321 1223333 2334 667777766
Q ss_pred ccc----ccccccCCCCCceEeccCCeecc
Q 040195 438 NGS----LLLQVGNLKNLILLDISGNQFSG 463 (472)
Q Consensus 438 ~~~----~~~~l~~~~~L~~L~L~~n~~~~ 463 (472)
++. +.+.+..++.++.+.+++|++.+
T Consensus 275 ~~~~~~~L~~~l~~~~~l~~l~l~~n~l~~ 304 (478)
T KOG4308|consen 275 TEKGVRDLAEVLVSCRQLEELSLSNNPLTD 304 (478)
T ss_pred cccchHHHHHHHhhhHHHHHhhcccCcccc
Confidence 643 33455555667777777776653
No 80
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=90.43 E-value=0.0084 Score=51.19 Aligned_cols=96 Identities=17% Similarity=0.088 Sum_probs=70.3
Q ss_pred ccccccCccCcceEeccccccccCcchhhcCCCCCcEEEccCCcCccccccchhcccccCeeeccCCcccccCCcCccCC
Q 040195 320 IHFGIRNLVNLIALGMQSNQLHGTIPDVIGELKNLQILSLFGNFLHGSIPSSLGNLTKLANLELSSNSLQGNIPLSVGNC 399 (472)
Q Consensus 320 ~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~ 399 (472)
....+..+...+.||++.|++-.. ..-|..++.+..|+++.|.+. ..|+.+.....+..+.+..|... ..|.++...
T Consensus 34 ~v~ei~~~kr~tvld~~s~r~vn~-~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~ 110 (326)
T KOG0473|consen 34 PVREIASFKRVTVLDLSSNRLVNL-GKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKE 110 (326)
T ss_pred chhhhhccceeeeehhhhhHHHhh-ccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCcccccc
Confidence 334556677788888888876633 234566778888888888877 67777777788888888888777 677788888
Q ss_pred CCCceEeecCCcccccCCh
Q 040195 400 QNLIGFDASHITLTGALPQ 418 (472)
Q Consensus 400 ~~L~~L~ls~~~~~~~~~~ 418 (472)
+.+++++..++.++..+..
T Consensus 111 ~~~k~~e~k~~~~~~~~~~ 129 (326)
T KOG0473|consen 111 PHPKKNEQKKTEFFRKLFG 129 (326)
T ss_pred CCcchhhhccCcchHHHHh
Confidence 8888888888887633333
No 81
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=88.46 E-value=0.3 Score=26.04 Aligned_cols=22 Identities=45% Similarity=0.566 Sum_probs=13.5
Q ss_pred CCCCceEeccCCeeccccCCcc
Q 040195 448 LKNLILLDISGNQFSGVIPVTL 469 (472)
Q Consensus 448 ~~~L~~L~L~~n~~~~~~p~~~ 469 (472)
+++|+.|+|++|.++...+..|
T Consensus 1 L~~L~~L~L~~N~l~~lp~~~f 22 (26)
T smart00369 1 LPNLRELDLSNNQLSSLPPGAF 22 (26)
T ss_pred CCCCCEEECCCCcCCcCCHHHc
Confidence 3567777888887764433333
No 82
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=88.46 E-value=0.3 Score=26.04 Aligned_cols=22 Identities=45% Similarity=0.566 Sum_probs=13.5
Q ss_pred CCCCceEeccCCeeccccCCcc
Q 040195 448 LKNLILLDISGNQFSGVIPVTL 469 (472)
Q Consensus 448 ~~~L~~L~L~~n~~~~~~p~~~ 469 (472)
+++|+.|+|++|.++...+..|
T Consensus 1 L~~L~~L~L~~N~l~~lp~~~f 22 (26)
T smart00370 1 LPNLRELDLSNNQLSSLPPGAF 22 (26)
T ss_pred CCCCCEEECCCCcCCcCCHHHc
Confidence 3567777888887764433333
No 83
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=87.62 E-value=0.024 Score=48.49 Aligned_cols=86 Identities=17% Similarity=0.236 Sum_probs=40.6
Q ss_pred hcCCCCCcEEEccCCcCccccccchhcccccCeeeccCCcccccCCcCccCCCCCceEeecCCcccccCChhhhhhcccc
Q 040195 348 IGELKNLQILSLFGNFLHGSIPSSLGNLTKLANLELSSNSLQGNIPLSVGNCQNLIGFDASHITLTGALPQQLLSITTLS 427 (472)
Q Consensus 348 ~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ls~~~~~~~~~~~l~~~~~l~ 427 (472)
+......+.|+++.|++. -+-.-|..++.++.|+++.|++. -.|..+.+...++.++.-+|... ..|.++...+.++
T Consensus 38 i~~~kr~tvld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~k 114 (326)
T KOG0473|consen 38 IASFKRVTVLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHPK 114 (326)
T ss_pred hhccceeeeehhhhhHHH-hhccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCCcc
Confidence 344455566666666554 22233444555555555555554 33444444444444444444443 3444444444444
Q ss_pred eEEEcCCCcc
Q 040195 428 LYLDLSHNLL 437 (472)
Q Consensus 428 ~~L~ls~n~l 437 (472)
++++.+|.+
T Consensus 115 -~~e~k~~~~ 123 (326)
T KOG0473|consen 115 -KNEQKKTEF 123 (326)
T ss_pred -hhhhccCcc
Confidence 444444443
No 84
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=76.20 E-value=1.7 Score=23.68 Aligned_cols=16 Identities=31% Similarity=0.399 Sum_probs=11.8
Q ss_pred CCCceEeccCCeeccc
Q 040195 449 KNLILLDISGNQFSGV 464 (472)
Q Consensus 449 ~~L~~L~L~~n~~~~~ 464 (472)
++|++|+|++|.+.+.
T Consensus 2 ~~L~~LdL~~N~i~~~ 17 (28)
T smart00368 2 PSLRELDLSNNKLGDE 17 (28)
T ss_pred CccCEEECCCCCCCHH
Confidence 4678888888887643
No 85
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=71.60 E-value=2.6 Score=22.47 Aligned_cols=18 Identities=33% Similarity=0.534 Sum_probs=12.8
Q ss_pred CCCceEeccCCeeccccCC
Q 040195 449 KNLILLDISGNQFSGVIPV 467 (472)
Q Consensus 449 ~~L~~L~L~~n~~~~~~p~ 467 (472)
++|+.|+.++|.++ .+|+
T Consensus 2 ~~L~~L~vs~N~Lt-~LPe 19 (26)
T smart00364 2 PSLKELNVSNNQLT-SLPE 19 (26)
T ss_pred cccceeecCCCccc-cCcc
Confidence 46777888888875 6665
No 86
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=70.90 E-value=2.3 Score=41.64 Aligned_cols=69 Identities=23% Similarity=0.297 Sum_probs=45.8
Q ss_pred ccCCCccEEEccCCccccccccccccChhhhcCCCCccEEEcccccccccCCccCc--CCCCCCEEecCCCccccc
Q 040195 179 GLLRNLVYLNVNENQFWYVSSFSGSLPFDILVNLPNLKKLCIAENNFVGSIPDSLS--NASNLELLELAGNQFEGK 252 (472)
Q Consensus 179 ~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~--~~~~L~~L~l~~~~~~~~ 252 (472)
.+.+.+..+++++|++.+++.++ +..+..|+|..|+|++|........++. +...|++|.+.+|++...
T Consensus 215 ~n~p~i~sl~lsnNrL~~Ld~~s-----slsq~apklk~L~LS~N~~~~~~~~el~K~k~l~Leel~l~GNPlc~t 285 (585)
T KOG3763|consen 215 ENFPEILSLSLSNNRLYHLDALS-----SLSQIAPKLKTLDLSHNHSKISSESELDKLKGLPLEELVLEGNPLCTT 285 (585)
T ss_pred cCCcceeeeecccchhhchhhhh-----HHHHhcchhheeecccchhhhcchhhhhhhcCCCHHHeeecCCccccc
Confidence 35678888889999887777655 2445678899999998822111122232 335678888888887543
No 87
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=68.69 E-value=3.9 Score=21.84 Aligned_cols=14 Identities=43% Similarity=0.513 Sum_probs=10.9
Q ss_pred CCCceEeccCCeec
Q 040195 449 KNLILLDISGNQFS 462 (472)
Q Consensus 449 ~~L~~L~L~~n~~~ 462 (472)
++|+.|+|++|.|+
T Consensus 2 ~~L~~L~L~~NkI~ 15 (26)
T smart00365 2 TNLEELDLSQNKIK 15 (26)
T ss_pred CccCEEECCCCccc
Confidence 57788888888875
No 88
>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]
Probab=65.35 E-value=26 Score=34.06 Aligned_cols=62 Identities=23% Similarity=0.184 Sum_probs=36.2
Q ss_pred CCCcEEEccCCcCccccc---cchhcccccCeeeccCCcccc----cCCcCccCCCCCceEeecCCccc
Q 040195 352 KNLQILSLFGNFLHGSIP---SSLGNLTKLANLELSSNSLQG----NIPLSVGNCQNLIGFDASHITLT 413 (472)
Q Consensus 352 ~~L~~L~L~~n~l~~~~~---~~l~~~~~L~~L~l~~~~~~~----~~~~~~~~~~~L~~L~ls~~~~~ 413 (472)
.-+..+.++.|+...... ..+..-+.+..|++++|.... .++..+....+++.+..+.|...
T Consensus 413 g~l~el~ls~~~lka~l~s~in~l~stqtl~kldisgn~mgd~gap~lpkalq~n~rlr~ipds~n~p~ 481 (553)
T KOG4242|consen 413 GVLAELSLSPGPLKAGLESAINKLLSTQTLAKLDISGNGMGDGGAPPLPKALQSNCRLRPIPDSLNLPE 481 (553)
T ss_pred ccccCcccCCCcccccHHHHHHhhccCcccccccccCCCcccCCCCcCccccCCCCccCCCCCCCCCcc
Confidence 345666667666652222 123345667777777776652 24555555667777777777654
No 89
>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]
Probab=59.65 E-value=30 Score=33.59 Aligned_cols=85 Identities=21% Similarity=0.099 Sum_probs=41.0
Q ss_pred CcceEeccccccccCcchh--hcCCCCCcEEEccCCcCccc-----cccchh----cccccCeeeccCCccccc---CCc
Q 040195 329 NLIALGMQSNQLHGTIPDV--IGELKNLQILSLFGNFLHGS-----IPSSLG----NLTKLANLELSSNSLQGN---IPL 394 (472)
Q Consensus 329 ~L~~L~l~~~~i~~~~~~~--~~~~~~L~~L~L~~n~l~~~-----~~~~l~----~~~~L~~L~l~~~~~~~~---~~~ 394 (472)
.++++.+++|...+++... ...-++.+.+++..-.-... ...... ..--++.++++.|+.... ...
T Consensus 355 R~q~l~~rdnnldgeg~~vgk~~~s~s~r~l~agrs~~kqvm~s~~~a~~v~k~~~~~g~l~el~ls~~~lka~l~s~in 434 (553)
T KOG4242|consen 355 RVQVLLQRDNNLDGEGGAVGKRKQSKSGRILKAGRSGDKQVMDSSTEAPPVSKKSRTHGVLAELSLSPGPLKAGLESAIN 434 (553)
T ss_pred eeeEeeccccccccccccccceeeccccccccccccCCceeccccccchhhhhhhcccccccCcccCCCcccccHHHHHH
Confidence 4777777777776654432 22345666666644322111 111111 112355666666655522 122
Q ss_pred CccCCCCCceEeecCCccc
Q 040195 395 SVGNCQNLIGFDASHITLT 413 (472)
Q Consensus 395 ~~~~~~~L~~L~ls~~~~~ 413 (472)
.+..-+.+..|++++|...
T Consensus 435 ~l~stqtl~kldisgn~mg 453 (553)
T KOG4242|consen 435 KLLSTQTLAKLDISGNGMG 453 (553)
T ss_pred hhccCcccccccccCCCcc
Confidence 2334455666666666544
No 90
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=53.52 E-value=7.5 Score=38.27 Aligned_cols=11 Identities=27% Similarity=0.371 Sum_probs=5.4
Q ss_pred cCcceEecccc
Q 040195 328 VNLIALGMQSN 338 (472)
Q Consensus 328 ~~L~~L~l~~~ 338 (472)
|+|..|+|++|
T Consensus 244 pklk~L~LS~N 254 (585)
T KOG3763|consen 244 PKLKTLDLSHN 254 (585)
T ss_pred chhheeecccc
Confidence 44445555544
No 91
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=51.60 E-value=9.6 Score=20.09 Aligned_cols=17 Identities=35% Similarity=0.387 Sum_probs=13.4
Q ss_pred CCCCceEeccCCe-eccc
Q 040195 448 LKNLILLDISGNQ-FSGV 464 (472)
Q Consensus 448 ~~~L~~L~L~~n~-~~~~ 464 (472)
+++|+.|+|++|+ +++.
T Consensus 1 c~~L~~L~l~~C~~itD~ 18 (26)
T smart00367 1 CPNLRELDLSGCTNITDE 18 (26)
T ss_pred CCCCCEeCCCCCCCcCHH
Confidence 5789999999996 6543
Done!