Query 040195
Match_columns 472
No_of_seqs 226 out of 3043
Neff 10.7
Searched_HMMs 29240
Date Mon Mar 25 09:18:00 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040195.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/040195hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rgz_A Protein brassinosteroid 100.0 2.3E-50 7.7E-55 420.4 35.9 454 10-471 25-560 (768)
2 3rgz_A Protein brassinosteroid 100.0 4.5E-47 1.5E-51 395.6 36.1 429 35-468 197-723 (768)
3 4eco_A Uncharacterized protein 100.0 1.8E-46 6.1E-51 382.5 28.5 421 14-465 55-603 (636)
4 3t6q_A CD180 antigen; protein- 100.0 4.8E-45 1.7E-49 372.0 38.5 428 37-470 32-544 (606)
5 4ecn_A Leucine-rich repeat pro 100.0 2.1E-44 7E-49 373.2 30.0 417 18-469 285-847 (876)
6 3t6q_A CD180 antigen; protein- 100.0 1.4E-43 4.9E-48 361.2 32.7 418 34-464 53-562 (606)
7 3vq2_A TLR4, TOLL-like recepto 100.0 2.6E-43 8.8E-48 359.3 34.0 419 37-470 31-541 (606)
8 2z63_A TOLL-like receptor 4, v 100.0 6.5E-43 2.2E-47 353.9 31.6 419 37-467 27-536 (570)
9 1ziw_A TOLL-like receptor 3; i 100.0 8.8E-42 3E-46 352.5 36.6 423 38-464 25-519 (680)
10 1ziw_A TOLL-like receptor 3; i 100.0 1.8E-41 6.3E-46 350.1 38.9 145 34-178 45-191 (680)
11 3vq2_A TLR4, TOLL-like recepto 100.0 1.2E-41 4.2E-46 346.9 31.1 412 34-464 52-560 (606)
12 2z81_A CD282 antigen, TOLL-lik 100.0 6.1E-42 2.1E-46 345.1 28.3 417 38-466 26-514 (549)
13 2z63_A TOLL-like receptor 4, v 100.0 2.4E-41 8.1E-46 342.4 32.0 392 34-442 48-535 (570)
14 3j0a_A TOLL-like receptor 5; m 100.0 3E-41 1E-45 355.3 29.4 421 26-470 14-547 (844)
15 4eco_A Uncharacterized protein 100.0 8.3E-41 2.8E-45 340.7 27.7 375 62-470 81-586 (636)
16 3v47_A TOLL-like receptor 5B a 100.0 4.4E-39 1.5E-43 316.5 28.8 364 62-466 30-412 (455)
17 2z7x_B TOLL-like receptor 1, v 100.0 1.3E-38 4.3E-43 318.5 30.7 393 38-464 21-483 (520)
18 3j0a_A TOLL-like receptor 5; m 100.0 5.7E-39 1.9E-43 337.9 28.3 415 33-463 43-561 (844)
19 4ecn_A Leucine-rich repeat pro 100.0 8.3E-39 2.8E-43 331.4 29.0 375 62-470 323-826 (876)
20 3v47_A TOLL-like receptor 5B a 100.0 4.3E-39 1.5E-43 316.6 24.0 371 38-442 30-412 (455)
21 2z81_A CD282 antigen, TOLL-lik 100.0 4.9E-39 1.7E-43 323.9 22.5 422 25-472 3-496 (549)
22 4g8a_A TOLL-like receptor 4; l 100.0 2.9E-37 9.9E-42 316.6 34.4 451 7-462 4-580 (635)
23 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 5.9E-37 2E-41 309.0 29.5 389 41-464 34-512 (562)
24 2z7x_B TOLL-like receptor 1, v 100.0 1.2E-36 4E-41 304.3 27.1 414 41-471 3-466 (520)
25 1o6v_A Internalin A; bacterial 100.0 3.3E-35 1.1E-39 289.2 34.1 345 37-439 45-389 (466)
26 3o6n_A APL1; leucine-rich repe 100.0 2E-34 6.8E-39 277.3 29.8 349 16-438 3-352 (390)
27 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 9.9E-35 3.4E-39 292.7 28.9 388 61-471 30-495 (562)
28 4g8a_A TOLL-like receptor 4; l 100.0 1.5E-33 5E-38 289.1 34.4 422 42-471 35-564 (635)
29 2id5_A Lingo-1, leucine rich r 100.0 3.2E-34 1.1E-38 283.4 27.9 319 42-389 15-333 (477)
30 2id5_A Lingo-1, leucine rich r 100.0 3.9E-34 1.3E-38 282.8 27.7 321 89-439 14-334 (477)
31 3bz5_A Internalin-J, INLJ; leu 100.0 2.4E-33 8.2E-38 273.8 28.8 348 36-470 40-395 (457)
32 1o6v_A Internalin A; bacterial 100.0 7.8E-33 2.7E-37 272.3 31.1 346 60-463 44-389 (466)
33 3oja_B Anopheles plasmodium-re 100.0 5.6E-33 1.9E-37 281.4 30.2 347 15-438 8-358 (597)
34 1jl5_A Outer protein YOPM; leu 100.0 1.3E-33 4.5E-38 275.3 23.7 375 38-471 11-420 (454)
35 4fmz_A Internalin; leucine ric 100.0 6.8E-32 2.3E-36 255.6 29.4 308 81-462 39-346 (347)
36 3o6n_A APL1; leucine-rich repe 100.0 2.6E-32 8.8E-37 262.5 26.6 310 37-414 44-353 (390)
37 4fmz_A Internalin; leucine ric 100.0 5.3E-32 1.8E-36 256.3 28.4 305 59-412 41-345 (347)
38 1ogq_A PGIP-2, polygalacturona 100.0 4.4E-33 1.5E-37 259.0 20.0 254 10-273 19-280 (313)
39 3oja_B Anopheles plasmodium-re 100.0 3.2E-31 1.1E-35 268.6 27.9 309 38-414 51-359 (597)
40 1z7x_W Ribonuclease inhibitor; 100.0 3.8E-35 1.3E-39 289.0 -3.8 385 37-463 2-441 (461)
41 1jl5_A Outer protein YOPM; leu 100.0 3.4E-31 1.2E-35 258.3 22.5 341 60-471 9-381 (454)
42 3bz5_A Internalin-J, INLJ; leu 100.0 1.9E-30 6.4E-35 253.4 27.6 328 54-463 34-369 (457)
43 1z7x_W Ribonuclease inhibitor; 100.0 4E-34 1.4E-38 281.7 -0.8 356 62-464 3-413 (461)
44 1xku_A Decorin; proteoglycan, 100.0 1.3E-29 4.5E-34 237.9 25.0 268 135-460 53-330 (330)
45 2ft3_A Biglycan; proteoglycan, 100.0 1.2E-29 4.1E-34 238.3 23.5 288 111-460 34-331 (332)
46 1xku_A Decorin; proteoglycan, 100.0 6.5E-29 2.2E-33 233.2 27.3 289 39-387 32-330 (330)
47 2ft3_A Biglycan; proteoglycan, 100.0 5.7E-29 1.9E-33 233.7 23.3 288 39-387 34-331 (332)
48 1ogq_A PGIP-2, polygalacturona 100.0 7.5E-29 2.6E-33 230.5 19.5 205 210-461 98-303 (313)
49 4fcg_A Uncharacterized protein 100.0 6.3E-28 2.2E-32 225.5 16.9 252 11-274 42-314 (328)
50 3ogk_B Coronatine-insensitive 100.0 3E-30 1E-34 262.1 0.2 379 60-464 110-528 (592)
51 3ogk_B Coronatine-insensitive 99.9 1.7E-29 5.7E-34 256.7 1.8 395 36-459 110-548 (592)
52 2z80_A TOLL-like receptor 2, v 99.9 7.3E-27 2.5E-31 221.3 17.8 281 133-466 30-318 (353)
53 2z80_A TOLL-like receptor 2, v 99.9 1.5E-26 5.2E-31 219.1 18.3 204 61-274 30-235 (353)
54 2z66_A Variable lymphocyte rec 99.9 3.5E-26 1.2E-30 212.3 19.5 242 26-275 7-262 (306)
55 2z66_A Variable lymphocyte rec 99.9 4.2E-26 1.4E-30 211.7 19.5 248 161-438 10-261 (306)
56 1ozn_A Reticulon 4 receptor; N 99.9 7.5E-26 2.6E-30 207.7 19.8 224 41-274 14-238 (285)
57 1ozn_A Reticulon 4 receptor; N 99.9 9E-26 3.1E-30 207.2 18.8 249 159-459 33-284 (285)
58 2p1m_B Transport inhibitor res 99.9 1.6E-28 5.4E-33 249.7 -0.2 157 36-192 64-245 (594)
59 4fcg_A Uncharacterized protein 99.9 2E-25 7E-30 208.5 20.5 235 181-462 80-314 (328)
60 3zyi_A Leucine-rich repeat-con 99.9 6.6E-25 2.2E-29 214.9 23.8 248 88-389 56-303 (452)
61 3zyj_A Leucine-rich repeat-con 99.9 4.6E-25 1.6E-29 215.2 22.3 247 160-462 45-292 (440)
62 3zyi_A Leucine-rich repeat-con 99.9 5.8E-25 2E-29 215.3 22.6 228 38-274 75-303 (452)
63 2p1m_B Transport inhibitor res 99.9 4.1E-28 1.4E-32 246.6 -2.1 402 36-460 103-542 (594)
64 3zyj_A Leucine-rich repeat-con 99.9 1.5E-24 5.1E-29 211.6 22.5 228 38-274 64-292 (440)
65 3o53_A Protein LRIM1, AGAP0063 99.9 1.8E-26 6.1E-31 215.0 8.1 238 155-457 31-270 (317)
66 3o53_A Protein LRIM1, AGAP0063 99.9 6.3E-26 2.2E-30 211.3 10.9 226 211-470 32-259 (317)
67 3g06_A SSPH2 (leucine-rich rep 99.9 4E-24 1.4E-28 214.7 24.4 268 110-448 40-307 (622)
68 3g06_A SSPH2 (leucine-rich rep 99.9 1.2E-24 4.3E-29 218.4 20.0 294 10-373 6-305 (622)
69 2o6q_A Variable lymphocyte rec 99.9 1E-23 3.5E-28 191.7 21.7 216 23-249 2-217 (270)
70 1wwl_A Monocyte differentiatio 99.9 1.2E-25 4.1E-30 208.9 7.3 270 16-342 21-310 (312)
71 1wwl_A Monocyte differentiatio 99.9 1.5E-25 5.2E-30 208.2 7.4 255 155-463 40-310 (312)
72 3oja_A Leucine-rich immune mol 99.9 1.8E-24 6.2E-29 212.9 15.2 235 182-457 34-270 (487)
73 3oja_A Leucine-rich immune mol 99.9 3.8E-24 1.3E-28 210.7 11.7 235 158-433 34-270 (487)
74 2z62_A TOLL-like receptor 4, v 99.9 2E-22 6.9E-27 183.9 18.9 204 63-274 29-237 (276)
75 2z62_A TOLL-like receptor 4, v 99.9 4.6E-22 1.6E-26 181.5 19.9 205 38-250 28-237 (276)
76 2o6q_A Variable lymphocyte rec 99.9 1.3E-21 4.4E-26 177.8 22.1 203 63-275 17-219 (270)
77 3rfs_A Internalin B, repeat mo 99.9 6.5E-22 2.2E-26 179.9 15.5 206 211-471 39-244 (272)
78 3goz_A Leucine-rich repeat-con 99.9 1.3E-23 4.4E-28 199.4 3.2 260 139-415 3-299 (362)
79 2ast_B S-phase kinase-associat 99.9 6.7E-23 2.3E-27 192.8 7.1 118 324-445 190-313 (336)
80 1p9a_G Platelet glycoprotein I 99.9 7.9E-21 2.7E-25 174.1 20.0 199 38-274 10-208 (290)
81 1p9a_G Platelet glycoprotein I 99.9 1.3E-20 4.4E-25 172.6 20.7 155 37-194 30-184 (290)
82 3goz_A Leucine-rich repeat-con 99.9 8.2E-23 2.8E-27 193.9 5.9 261 114-391 2-299 (362)
83 3rfs_A Internalin B, repeat mo 99.9 4.9E-21 1.7E-25 174.1 17.2 199 58-274 37-235 (272)
84 2ca6_A RAN GTPase-activating p 99.9 3.9E-23 1.3E-27 198.2 3.3 122 150-274 24-172 (386)
85 2ca6_A RAN GTPase-activating p 99.9 1.2E-22 4E-27 194.8 5.0 99 173-274 23-135 (386)
86 3m19_A Variable lymphocyte rec 99.9 1.5E-20 5.1E-25 168.8 18.2 165 24-194 3-167 (251)
87 2ast_B S-phase kinase-associat 99.9 1.5E-22 5.1E-27 190.4 4.9 235 25-271 36-282 (336)
88 2xwt_C Thyrotropin receptor; s 99.9 1.1E-20 3.7E-25 168.4 16.1 198 62-272 31-237 (239)
89 4glp_A Monocyte differentiatio 99.8 1.4E-20 4.7E-25 174.6 15.2 207 61-274 63-285 (310)
90 2xwt_C Thyrotropin receptor; s 99.8 2.6E-20 8.7E-25 166.0 15.9 198 37-247 30-236 (239)
91 4glp_A Monocyte differentiatio 99.8 5.5E-21 1.9E-25 177.3 11.6 152 305-463 146-308 (310)
92 3m19_A Variable lymphocyte rec 99.8 4.1E-20 1.4E-24 165.9 16.2 160 304-464 35-194 (251)
93 1h6u_A Internalin H; cell adhe 99.8 5E-20 1.7E-24 170.4 17.2 194 179-439 38-231 (308)
94 1h6u_A Internalin H; cell adhe 99.8 1.2E-19 4E-24 168.0 16.4 194 58-274 37-230 (308)
95 2o6s_A Variable lymphocyte rec 99.8 5.5E-19 1.9E-23 153.8 11.6 161 304-472 28-188 (208)
96 2o6s_A Variable lymphocyte rec 99.8 2.6E-18 8.9E-23 149.5 15.8 164 61-238 27-190 (208)
97 4ay9_X Follicle-stimulating ho 99.8 1.1E-17 3.7E-22 157.8 17.4 241 138-410 13-256 (350)
98 4ay9_X Follicle-stimulating ho 99.8 4.7E-18 1.6E-22 160.2 13.5 221 38-270 30-255 (350)
99 3e6j_A Variable lymphocyte rec 99.8 2.3E-17 8E-22 145.5 16.6 165 15-195 8-172 (229)
100 3cvr_A Invasion plasmid antige 99.8 7.9E-18 2.7E-22 167.0 14.6 188 213-448 59-253 (571)
101 2v9t_B SLIT homolog 2 protein 99.7 1.4E-17 4.8E-22 145.9 13.9 152 307-462 14-165 (220)
102 3e6j_A Variable lymphocyte rec 99.7 2.7E-17 9.3E-22 145.1 14.9 155 305-464 20-174 (229)
103 1h6t_A Internalin B; cell adhe 99.7 2E-17 6.9E-22 151.5 13.2 171 59-250 43-213 (291)
104 2v70_A SLIT-2, SLIT homolog 2 99.7 2.3E-17 7.8E-22 144.6 12.9 154 306-463 13-167 (220)
105 3cvr_A Invasion plasmid antige 99.7 2.4E-17 8.2E-22 163.6 14.7 216 15-260 32-253 (571)
106 2xot_A Amphoterin-induced prot 99.7 2E-17 7E-22 156.5 13.4 157 304-462 39-202 (361)
107 1h6t_A Internalin B; cell adhe 99.7 4.1E-17 1.4E-21 149.5 14.8 171 36-227 44-214 (291)
108 4ezg_A Putative uncharacterize 99.7 2.5E-17 8.4E-22 141.9 12.4 151 304-463 44-195 (197)
109 1m9s_A Internalin B; cell inva 99.7 8.5E-17 2.9E-21 161.4 16.7 172 59-251 40-211 (605)
110 2v9t_B SLIT homolog 2 protein 99.7 1.4E-16 4.6E-21 139.6 15.2 152 41-195 14-165 (220)
111 4ezg_A Putative uncharacterize 99.7 9.3E-17 3.2E-21 138.3 12.2 152 83-249 41-193 (197)
112 2v70_A SLIT-2, SLIT homolog 2 99.7 3.1E-16 1.1E-20 137.3 15.3 151 42-195 15-166 (220)
113 1m9s_A Internalin B; cell inva 99.7 3.1E-16 1.1E-20 157.3 17.2 174 35-229 40-213 (605)
114 4fs7_A Uncharacterized protein 99.7 1.4E-15 4.8E-20 145.8 20.6 125 321-454 269-393 (394)
115 2xot_A Amphoterin-induced prot 99.7 1.7E-16 5.9E-21 150.1 13.4 175 41-225 21-201 (361)
116 3sb4_A Hypothetical leucine ri 99.7 1.2E-16 4E-21 149.4 11.8 103 351-456 225-328 (329)
117 4fs7_A Uncharacterized protein 99.7 2.5E-15 8.6E-20 144.0 20.0 334 49-427 58-391 (394)
118 3sb4_A Hypothetical leucine ri 99.7 1.5E-16 5E-21 148.7 8.9 77 305-383 251-328 (329)
119 1xeu_A Internalin C; cellular 99.6 3.8E-16 1.3E-20 140.7 10.5 169 61-251 18-186 (263)
120 4fdw_A Leucine rich hypothetic 99.6 1.4E-14 4.8E-19 138.2 21.7 88 321-411 293-381 (401)
121 4fdw_A Leucine rich hypothetic 99.6 1.3E-14 4.3E-19 138.5 21.0 265 157-461 112-382 (401)
122 1dce_A Protein (RAB geranylger 99.6 6.5E-19 2.2E-23 175.7 -9.1 104 330-439 443-547 (567)
123 1xeu_A Internalin C; cellular 99.6 1.7E-15 5.9E-20 136.4 13.1 147 304-464 41-187 (263)
124 2ell_A Acidic leucine-rich nuc 99.6 4.5E-16 1.5E-20 130.3 8.4 136 328-468 24-165 (168)
125 1w8a_A SLIT protein; signaling 99.6 3.4E-15 1.2E-19 127.7 11.6 131 306-440 10-141 (192)
126 2je0_A Acidic leucine-rich nuc 99.6 1.1E-15 3.8E-20 125.1 7.7 128 328-458 17-149 (149)
127 4gt6_A Cell surface protein; l 99.6 5.4E-13 1.9E-17 127.7 24.9 138 316-461 253-390 (394)
128 2ell_A Acidic leucine-rich nuc 99.6 1E-14 3.5E-19 122.0 10.5 130 62-193 24-158 (168)
129 2wfh_A SLIT homolog 2 protein 99.6 2.7E-14 9.1E-19 122.1 12.6 127 307-438 13-139 (193)
130 4b8c_D Glucose-repressible alc 99.6 8.3E-16 2.8E-20 158.1 3.7 146 304-459 224-369 (727)
131 4gt6_A Cell surface protein; l 99.5 1E-12 3.4E-17 125.9 23.5 128 328-461 242-369 (394)
132 2o6r_A Variable lymphocyte rec 99.5 3.5E-14 1.2E-18 119.8 11.8 130 306-439 9-138 (177)
133 1w8a_A SLIT protein; signaling 99.5 3.3E-14 1.1E-18 121.6 11.8 112 304-415 29-141 (192)
134 1dce_A Protein (RAB geranylger 99.5 2.7E-16 9.2E-21 156.8 -1.6 141 319-466 400-550 (567)
135 2je0_A Acidic leucine-rich nuc 99.5 1.4E-14 4.8E-19 118.5 8.8 108 62-171 17-126 (149)
136 1a9n_A U2A', U2A'; complex (nu 99.5 1.9E-14 6.5E-19 121.3 8.4 133 324-462 15-153 (176)
137 2wfh_A SLIT homolog 2 protein 99.5 3.8E-13 1.3E-17 114.9 14.1 127 41-171 13-139 (193)
138 4b8c_D Glucose-repressible alc 99.5 2.2E-14 7.6E-19 147.5 7.2 143 322-469 218-361 (727)
139 2o6r_A Variable lymphocyte rec 99.5 6.2E-13 2.1E-17 112.1 14.6 128 42-172 11-138 (177)
140 1a9n_A U2A', U2A'; complex (nu 99.4 3.2E-13 1.1E-17 113.8 9.5 131 58-194 15-152 (176)
141 1ds9_A Outer arm dynein; leuci 99.4 4.4E-15 1.5E-19 127.9 -3.7 132 323-463 43-186 (198)
142 1ds9_A Outer arm dynein; leuci 99.4 2.7E-15 9.2E-20 129.2 -5.2 136 326-467 16-158 (198)
143 3un9_A NLR family member X1; l 99.3 3E-14 1E-18 134.6 -2.9 163 303-466 71-256 (372)
144 3un9_A NLR family member X1; l 99.3 1.3E-13 4.6E-18 130.1 0.7 133 329-462 127-283 (372)
145 3g39_A Variable lymphocyte rec 99.3 5E-12 1.7E-16 105.6 10.1 106 330-439 11-116 (170)
146 4h09_A Hypothetical leucine ri 99.3 3.7E-10 1.3E-14 107.4 23.4 166 212-402 193-358 (379)
147 4h09_A Hypothetical leucine ri 99.3 5.1E-10 1.7E-14 106.5 24.2 140 305-450 218-357 (379)
148 2r9u_A Variable lymphocyte rec 99.3 1.1E-11 3.7E-16 103.9 10.3 105 331-439 15-119 (174)
149 3g39_A Variable lymphocyte rec 99.3 2.3E-11 7.9E-16 101.5 11.0 107 305-414 10-116 (170)
150 2r9u_A Variable lymphocyte rec 99.3 3.6E-11 1.2E-15 100.7 11.2 109 306-418 14-122 (174)
151 2ifg_A High affinity nerve gro 99.0 7.2E-10 2.5E-14 104.1 9.4 105 331-439 11-117 (347)
152 2ifg_A High affinity nerve gro 99.0 1E-09 3.5E-14 103.0 9.3 104 307-413 11-116 (347)
153 2ra8_A Uncharacterized protein 98.9 1.5E-09 5.1E-14 101.5 7.7 157 305-465 140-323 (362)
154 2ra8_A Uncharacterized protein 98.9 1.1E-08 3.8E-13 95.6 11.1 61 207-270 166-228 (362)
155 1io0_A Tropomodulin; LRR prote 98.7 2.8E-09 9.6E-14 90.0 2.2 117 321-438 29-164 (185)
156 1io0_A Tropomodulin; LRR prote 98.7 7.2E-09 2.5E-13 87.5 3.6 118 344-462 28-164 (185)
157 3e4g_A ATP synthase subunit S, 98.6 2.3E-08 7.9E-13 82.1 3.1 82 353-435 62-149 (176)
158 3e4g_A ATP synthase subunit S, 98.5 3.9E-08 1.3E-12 80.7 3.1 84 328-411 61-150 (176)
159 3rw6_A Nuclear RNA export fact 98.1 1.1E-06 3.6E-11 77.9 3.0 40 350-389 168-209 (267)
160 3rw6_A Nuclear RNA export fact 98.0 3.5E-06 1.2E-10 74.6 5.1 80 325-406 167-257 (267)
161 1pgv_A TMD-1, tropomodulin TMD 97.8 9.8E-06 3.4E-10 67.8 3.4 115 323-438 36-170 (197)
162 1pgv_A TMD-1, tropomodulin TMD 97.7 1.2E-05 4.1E-10 67.2 2.8 116 345-461 34-169 (197)
163 3rfe_A Platelet glycoprotein I 96.3 0.0044 1.5E-07 48.1 5.1 56 380-438 12-68 (130)
164 3rfe_A Platelet glycoprotein I 95.6 0.019 6.4E-07 44.5 5.6 35 354-388 33-67 (130)
165 2lz0_A Uncharacterized protein 80.6 1.8 6E-05 31.4 3.9 47 315-362 7-53 (100)
166 2lz0_A Uncharacterized protein 76.2 7.7 0.00026 27.9 6.3 47 339-386 7-53 (100)
No 1
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=2.3e-50 Score=420.43 Aligned_cols=454 Identities=30% Similarity=0.456 Sum_probs=337.2
Q ss_pred CCCCCCCCCCCCCCCcccccceeeCCCCCceEEEECCCCccCcc---c-----------------------CccccCCCC
Q 040195 10 HDPSGVTSSWNNTINLCQWMGVTCGHRHQRVTELDLSNQRIGGV---L-----------------------SPYVGNLSF 63 (472)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~---~-----------------------~~~l~~~~~ 63 (472)
.||. .+++|+.+.+||.|.|+.|. ..+|+.|+++++.+.+. . +..+..+++
T Consensus 25 ~~~~-~l~~W~~~~~~C~w~gv~C~--~~~v~~L~L~~~~l~g~~~~l~~~l~~L~~L~~l~~~~~~~~~l~~~~~~l~~ 101 (768)
T 3rgz_A 25 PDKN-LLPDWSSNKNPCTFDGVTCR--DDKVTSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHINGSVSGFKCSAS 101 (768)
T ss_dssp SCTT-SSTTCCTTSCGGGSTTEEEE--TTEEEEEECTTSCCCEEHHHHHHHTTTCTTCCEEECTTSCEEECCCCCCCCTT
T ss_pred CCcc-cccCCCCCCCCcCCcceEEC--CCcEEEEECCCCCcCCccCccChhHhccCcccccCCcCCCcCCCchhhccCCC
Confidence 4777 89999988999999999997 47999999999877653 1 257888899
Q ss_pred ccEEeccCCcCccCcch--hhhcCCCCCEEEccCcccCCCCCccc-CCCCCCcEEEcccCcCcccCCcc---c-------
Q 040195 64 LRYINLSDNGFHGEIPQ--EIGNLYRLEKLELSNNSFSGTIPTNL-SRCSELTHLRVANNKLEGQIPKE---I------- 130 (472)
Q Consensus 64 L~~L~L~~~~~~~~~~~--~~~~l~~L~~L~L~~~~~~~~~~~~l-~~l~~L~~L~l~~~~~~~~~~~~---l------- 130 (472)
|++|+|++|.+.+..|. .+.++++|++|++++|.+.+..|..+ .++++|++|++++|.+++..+.. +
T Consensus 102 L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~ 181 (768)
T 3rgz_A 102 LTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELK 181 (768)
T ss_dssp CCEEECCSSEEEEEGGGGGGGGGCTTCCEEECCSSEEECCSSCCSCCCCTTCSEEECCSSCCEEETHHHHHHTTCCTTCC
T ss_pred CCEEECCCCcCCCcCCChHHHhCCCCCCEEECcCCccCCcCCHHHhccCCCCCEEECCCCccCCcCChhhhhhccCCCCC
Confidence 99999999998876777 88999999999999998876666554 67777888888777766433332 2
Q ss_pred ---------------cCCCCCcEEEccccCCCCCCCccccCCCCccEEEecCCccccccccccccCCCccEEEccCCccc
Q 040195 131 ---------------GSLLKLQTLALYYNNLTGQLPDFVGNLSALQVIYIRGNSLGGKIPTTLGLLRNLVYLNVNENQFW 195 (472)
Q Consensus 131 ---------------~~l~~L~~L~l~~~~i~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~ 195 (472)
..+++|++|++++|.+.+..|. +..+++|++|++++|.+++..+..+..+++|++|++++|.+.
T Consensus 182 ~L~Ls~n~l~~~~~~~~l~~L~~L~Ls~n~l~~~~~~-l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~ 260 (768)
T 3rgz_A 182 HLAISGNKISGDVDVSRCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFV 260 (768)
T ss_dssp EEECCSSEEESCCBCTTCTTCCEEECCSSCCCSCCCB-CTTCCSCCEEECCSSCCCSCHHHHTTTCSSCCEEECCSSCCE
T ss_pred EEECCCCcccccCCcccCCcCCEEECcCCcCCCCCcc-cccCCCCCEEECcCCcCCCcccHHHhcCCCCCEEECCCCccc
Confidence 3456666666666666654554 677777777777777777666777777777777777777653
Q ss_pred cccc----------------cccccChhhhcCCCCccEEEcccccccccCCccCcCCCCCCEEecCCCccccccccc-cc
Q 040195 196 YVSS----------------FSGSLPFDILVNLPNLKKLCIAENNFVGSIPDSLSNASNLELLELAGNQFEGKVSID-FS 258 (472)
Q Consensus 196 ~~~~----------------~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~-l~ 258 (472)
.... ..+.+|......+++|++|++++|.+++..|..++.+++|++|++++|.+.+..+.. +.
T Consensus 261 ~~~~~~~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~ 340 (768)
T 3rgz_A 261 GPIPPLPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLL 340 (768)
T ss_dssp ESCCCCCCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEEEECCHHHHT
T ss_pred CccCccccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHhcCCCccEEECCCCcccCcCCHHHHh
Confidence 2110 111222222222355555555555555555555555555555555555554333332 55
Q ss_pred ccCCCCeEEcCCCcCCCCCCCCcchhhhhc-ccCCCcC---------Cchhhh-ccccccEEEeecccccCcccccccCc
Q 040195 259 SLKNLAVLNLERNNLGIGTANDLGFVTFLT-NCSSLKL---------PHSIAN-LSSTMTHFYIGGNQILGIIHFGIRNL 327 (472)
Q Consensus 259 ~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~-~~~~l~~---------~~~~~~-~~~~l~~l~l~~~~~~~~~~~~l~~~ 327 (472)
.+++|++|++++|.+.......+ .... +++.+.+ +..+.. ..+++++|++++|.++...+..+..+
T Consensus 341 ~l~~L~~L~Ls~n~l~~~~p~~l---~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l 417 (768)
T 3rgz_A 341 KMRGLKVLDLSFNEFSGELPESL---TNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNC 417 (768)
T ss_dssp TCTTCCEEECCSSEEEECCCTTH---HHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGC
T ss_pred cCCCCCEEeCcCCccCccccHHH---HhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHHhcC
Confidence 55566666666655432111111 1111 2222222 111111 13478889999888888888889999
Q ss_pred cCcceEeccccccccCcchhhcCCCCCcEEEccCCcCccccccchhcccccCeeeccCCcccccCCcCccCCCCCceEee
Q 040195 328 VNLIALGMQSNQLHGTIPDVIGELKNLQILSLFGNFLHGSIPSSLGNLTKLANLELSSNSLQGNIPLSVGNCQNLIGFDA 407 (472)
Q Consensus 328 ~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l 407 (472)
++|++|++++|.+.+..|..++.+++|++|++++|.+.+..|..+..+++|++|++++|++++.+|..+..+++|++|++
T Consensus 418 ~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L 497 (768)
T 3rgz_A 418 SELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISL 497 (768)
T ss_dssp TTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEEC
T ss_pred CCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEc
Confidence 99999999999999889999999999999999999999889999999999999999999999889999999999999999
Q ss_pred cCCcccccCChhhhhhcccceEEEcCCCcccccccccccCCCCCceEeccCCeeccccCCcccc
Q 040195 408 SHITLTGALPQQLLSITTLSLYLDLSHNLLNGSLLLQVGNLKNLILLDISGNQFSGVIPVTLSI 471 (472)
Q Consensus 408 s~~~~~~~~~~~l~~~~~l~~~L~ls~n~l~~~~~~~l~~~~~L~~L~L~~n~~~~~~p~~~~~ 471 (472)
++|++.+.+|..+..+++|+ .|++++|++++.+|..+.++++|+.|++++|++++.+|..+.+
T Consensus 498 ~~N~l~~~~p~~~~~l~~L~-~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~ 560 (768)
T 3rgz_A 498 SNNRLTGEIPKWIGRLENLA-ILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFK 560 (768)
T ss_dssp CSSCCCSCCCGGGGGCTTCC-EEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGT
T ss_pred cCCccCCcCChHHhcCCCCC-EEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhc
Confidence 99999988999999999999 9999999999999999999999999999999999999988765
No 2
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=4.5e-47 Score=395.58 Aligned_cols=429 Identities=30% Similarity=0.457 Sum_probs=301.5
Q ss_pred CCCCceEEEECCCCccCcccCccccCCCCccEEeccCCcCccCcchhhhcCCCCCEEEccCcccCCCCCcccCCCCCCcE
Q 040195 35 HRHQRVTELDLSNQRIGGVLSPYVGNLSFLRYINLSDNGFHGEIPQEIGNLYRLEKLELSNNSFSGTIPTNLSRCSELTH 114 (472)
Q Consensus 35 ~~~~~l~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~ 114 (472)
...+++++|++++|.+.+..+. +..+++|++|++++|.+.+..|..+.++++|++|++++|.+.+..|.. .+++|++
T Consensus 197 ~~l~~L~~L~Ls~n~l~~~~~~-l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~--~l~~L~~ 273 (768)
T 3rgz_A 197 SRCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPL--PLKSLQY 273 (768)
T ss_dssp TTCTTCCEEECCSSCCCSCCCB-CTTCCSCCEEECCSSCCCSCHHHHTTTCSSCCEEECCSSCCEESCCCC--CCTTCCE
T ss_pred ccCCcCCEEECcCCcCCCCCcc-cccCCCCCEEECcCCcCCCcccHHHhcCCCCCEEECCCCcccCccCcc--ccCCCCE
Confidence 4557777788887777665555 778888888888888877777777788888888888877776554443 5666777
Q ss_pred EEcccCcCcccCCccccCC-CCCcEEEccccCCCCCCCccccCCCCccEEEecCCccccccccc-cccCCCccEEEccCC
Q 040195 115 LRVANNKLEGQIPKEIGSL-LKLQTLALYYNNLTGQLPDFVGNLSALQVIYIRGNSLGGKIPTT-LGLLRNLVYLNVNEN 192 (472)
Q Consensus 115 L~l~~~~~~~~~~~~l~~l-~~L~~L~l~~~~i~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~-l~~~~~L~~L~l~~~ 192 (472)
|++++|.+++..|..+... ++|++|++++|.+.+..|..+..+++|++|++++|.+++..+.. +..+++|++|++++|
T Consensus 274 L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n 353 (768)
T 3rgz_A 274 LSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFN 353 (768)
T ss_dssp EECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSS
T ss_pred EECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHhcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCC
Confidence 7777776665556655553 67777777777766666666677777777777777666555543 666666777777666
Q ss_pred cccc-ccc------------------cccccChhhh-cCCCCccEEEcccccccccCCccCcCCCCCCEEecCCCccccc
Q 040195 193 QFWY-VSS------------------FSGSLPFDIL-VNLPNLKKLCIAENNFVGSIPDSLSNASNLELLELAGNQFEGK 252 (472)
Q Consensus 193 ~l~~-~~~------------------~~~~~~~~~~-~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~ 252 (472)
.+.. +.. +.+.++.... ..+++|++|++++|.+++..|..+..+++|+.|++++|.+++.
T Consensus 354 ~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ 433 (768)
T 3rgz_A 354 EFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGT 433 (768)
T ss_dssp EEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESC
T ss_pred ccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCc
Confidence 5431 110 0111121111 1156677777777777767777777778888888888877767
Q ss_pred ccccccccCCCCeEEcCCCcCCCCCCCCcchhhhhc-----ccCCC-cCCchhhhccccccEEEeecccccCcccccccC
Q 040195 253 VSIDFSSLKNLAVLNLERNNLGIGTANDLGFVTFLT-----NCSSL-KLPHSIANLSSTMTHFYIGGNQILGIIHFGIRN 326 (472)
Q Consensus 253 ~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~-----~~~~l-~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~l~~ 326 (472)
.+..+..+++|+.|++++|.+.......+.....+. +..-. ..|..+.. .++++.|++++|.++...+..+..
T Consensus 434 ~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~-l~~L~~L~L~~N~l~~~~p~~~~~ 512 (768)
T 3rgz_A 434 IPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSN-CTNLNWISLSNNRLTGEIPKWIGR 512 (768)
T ss_dssp CCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGG-CTTCCEEECCSSCCCSCCCGGGGG
T ss_pred ccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhc-CCCCCEEEccCCccCCcCChHHhc
Confidence 777777778888888888777643222222111111 11111 12333333 347888888888888777778888
Q ss_pred ccCcceEeccccccccCcchhhcCCCCCcEEEccCCcCccccccch----------------------------------
Q 040195 327 LVNLIALGMQSNQLHGTIPDVIGELKNLQILSLFGNFLHGSIPSSL---------------------------------- 372 (472)
Q Consensus 327 ~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l---------------------------------- 372 (472)
+++|++|++++|.+.+.+|..++.+++|+.|++++|++.+.+|..+
T Consensus 513 l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 592 (768)
T 3rgz_A 513 LENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGN 592 (768)
T ss_dssp CTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEE
T ss_pred CCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhcccccccccccccccccccccccc
Confidence 8888888888888887888888888888888888887765555432
Q ss_pred ------------------------------------hcccccCeeeccCCcccccCCcCccCCCCCceEeecCCcccccC
Q 040195 373 ------------------------------------GNLTKLANLELSSNSLQGNIPLSVGNCQNLIGFDASHITLTGAL 416 (472)
Q Consensus 373 ------------------------------------~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ls~~~~~~~~ 416 (472)
..++.|+.|++++|++++.+|..+..+++|+.|++++|.+++.+
T Consensus 593 ~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~i 672 (768)
T 3rgz_A 593 LLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSI 672 (768)
T ss_dssp EEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCC
T ss_pred ccccccccchhhhccccccccccccceecccCchhhhccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCC
Confidence 23466888888888888888888888888888899888888888
Q ss_pred ChhhhhhcccceEEEcCCCcccccccccccCCCCCceEeccCCeeccccCCc
Q 040195 417 PQQLLSITTLSLYLDLSHNLLNGSLLLQVGNLKNLILLDISGNQFSGVIPVT 468 (472)
Q Consensus 417 ~~~l~~~~~l~~~L~ls~n~l~~~~~~~l~~~~~L~~L~L~~n~~~~~~p~~ 468 (472)
|..+..++.|+ .|++++|++++.+|..+..+++|+.|++++|++++.+|+.
T Consensus 673 p~~l~~L~~L~-~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~iP~~ 723 (768)
T 3rgz_A 673 PDEVGDLRGLN-ILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEM 723 (768)
T ss_dssp CGGGGGCTTCC-EEECCSSCCEECCCGGGGGCCCCSEEECCSSEEEEECCSS
T ss_pred ChHHhCCCCCC-EEECCCCcccCcCChHHhCCCCCCEEECcCCcccccCCCc
Confidence 88888888888 8899999888888888888888999999999888888864
No 3
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=1.8e-46 Score=382.46 Aligned_cols=421 Identities=22% Similarity=0.292 Sum_probs=306.3
Q ss_pred CCCCCCCCCCCcccc---cceeeCCCCCceEEEECCCCccCcccCccccCCCCccEEeccCCcC----------------
Q 040195 14 GVTSSWNNTINLCQW---MGVTCGHRHQRVTELDLSNQRIGGVLSPYVGNLSFLRYINLSDNGF---------------- 74 (472)
Q Consensus 14 ~~~~~~~~~~~~~~~---~~~~~~~~~~~l~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~~~~---------------- 74 (472)
.....|+...++|.| .|+.|..+ .+|+.|+++++.+.+..+..++++++|++|+|++|.+
T Consensus 55 ~~~~~W~~~~~~c~w~~~~GV~C~~~-~~V~~L~L~~~~l~g~lp~~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~ 133 (636)
T 4eco_A 55 QPGANWNFNKELDMWGAQPGVSLNSN-GRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANM 133 (636)
T ss_dssp ---CCCCCSSCGGGTTCCTTEEECTT-CCEEEEECTTSCCEEEECGGGGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTC
T ss_pred ccCCCCCCCCCcccccCCCCeEEcCC-CCEEEEEecCcccCCcCChHHhcCccceEEECcCCccccCCccccccccccCc
Confidence 345689999999999 99999765 7999999999999999999999999999999998843
Q ss_pred --------------------------------------------------------------ccCcchhhhcCCCCCEEE
Q 040195 75 --------------------------------------------------------------HGEIPQEIGNLYRLEKLE 92 (472)
Q Consensus 75 --------------------------------------------------------------~~~~~~~~~~l~~L~~L~ 92 (472)
++ +|..+.++++|++|+
T Consensus 134 ~~~~~~~l~l~l~~~~l~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~l~~l~l~~~~n~l~~-ip~~l~~l~~L~~L~ 212 (636)
T 4eco_A 134 SDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITF-VSKAVMRLTKLRQFY 212 (636)
T ss_dssp CHHHHHHHHTHHHHHHTCCCGGGGSCHHHHHHHHHCTTSCCCCCCCCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEE
T ss_pred hHHHHHHHHhhHHHhhhccCchhhHHHHHHHHhhcCccccccccccccchhhhhhccccCCCcc-CCHHHhcccCCCEEE
Confidence 12 456677777777777
Q ss_pred ccCcccCCC-----------------CCcccC--CCCCCcEEEcccCcCcccCCccccCCCCCcEEEccccC-CCC-CCC
Q 040195 93 LSNNSFSGT-----------------IPTNLS--RCSELTHLRVANNKLEGQIPKEIGSLLKLQTLALYYNN-LTG-QLP 151 (472)
Q Consensus 93 L~~~~~~~~-----------------~~~~l~--~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~-i~~-~~~ 151 (472)
+++|.+.+. .|..+. ++++|++|++++|.+.+..|..+.++++|++|++++|. +++ .+|
T Consensus 213 Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp 292 (636)
T 4eco_A 213 MGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLK 292 (636)
T ss_dssp EESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHH
T ss_pred CcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccccch
Confidence 777777753 677777 77777777777777776777777777777777777776 665 566
Q ss_pred ccccCC------CCccEEEecCCcccccccc--ccccCCCccEEEccCCccccccccccccChhhhcCCCCccEEEcccc
Q 040195 152 DFVGNL------SALQVIYIRGNSLGGKIPT--TLGLLRNLVYLNVNENQFWYVSSFSGSLPFDILVNLPNLKKLCIAEN 223 (472)
Q Consensus 152 ~~l~~~------~~L~~L~l~~~~~~~~~~~--~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 223 (472)
..+..+ ++|++|++++|.++ .+|. .++.+++|++|++++|.+. +.+| .+..+++|+.|++++|
T Consensus 293 ~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N~l~------g~ip--~~~~l~~L~~L~L~~N 363 (636)
T 4eco_A 293 DDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQKMKKLGMLECLYNQLE------GKLP--AFGSEIKLASLNLAYN 363 (636)
T ss_dssp HHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTCTTCCEEECCSCCCE------EECC--CCEEEEEESEEECCSS
T ss_pred HHHHhhhccccCCCCCEEECCCCcCC-ccCchhhhccCCCCCEEeCcCCcCc------cchh--hhCCCCCCCEEECCCC
Confidence 666554 77777777777777 5666 6777777777777777752 2444 3456677777777777
Q ss_pred cccccCCccCcCCCC-CCEEecCCCcccccccccccccC--CCCeEEcCCCcCCCCCCCCcchhhhhcccCCCcCCchhh
Q 040195 224 NFVGSIPDSLSNASN-LELLELAGNQFEGKVSIDFSSLK--NLAVLNLERNNLGIGTANDLGFVTFLTNCSSLKLPHSIA 300 (472)
Q Consensus 224 ~l~~~~~~~l~~~~~-L~~L~l~~~~~~~~~~~~l~~l~--~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 300 (472)
.+. .+|..+..+++ |++|++++|.++ ..+..+.... +|++|++++|.+.......+.. + ... .
T Consensus 364 ~l~-~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~------~-----~~~-~ 429 (636)
T 4eco_A 364 QIT-EIPANFCGFTEQVENLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDP------L-----DPT-P 429 (636)
T ss_dssp EEE-ECCTTSEEECTTCCEEECCSSCCS-SCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCT------T-----CSS-C
T ss_pred ccc-cccHhhhhhcccCcEEEccCCcCc-ccchhhhhcccCccCEEECcCCcCCCcchhhhcc------c-----ccc-c
Confidence 777 55666777777 777777777776 4445554443 7777777777765321111100 0 000 0
Q ss_pred hccccccEEEeecccccCcccccccCccCcceEeccccccccCcchhhcCC-------CCCcEEEccCCcCccccccchh
Q 040195 301 NLSSTMTHFYIGGNQILGIIHFGIRNLVNLIALGMQSNQLHGTIPDVIGEL-------KNLQILSLFGNFLHGSIPSSLG 373 (472)
Q Consensus 301 ~~~~~l~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~-------~~L~~L~L~~n~l~~~~~~~l~ 373 (472)
...++++.|++++|.++.+....+..+++|++|++++|.+....+..+... ++|++|++++|.++ .+|..+.
T Consensus 430 ~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~ 508 (636)
T 4eco_A 430 FKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLT-KLSDDFR 508 (636)
T ss_dssp CCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCSBCCSSSSEETTEECTTGGGCCEEECCSSCCC-BCCGGGS
T ss_pred ccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCCCcCHHHhccccccccccCCccEEECcCCcCC-ccChhhh
Confidence 012378888888888887666666778888888888888884333333322 28888888888888 6676665
Q ss_pred --cccccCeeeccCCcccccCCcCccCCCCCceEeec------CCcccccCChhhhhhcccceEEEcCCCcccccccccc
Q 040195 374 --NLTKLANLELSSNSLQGNIPLSVGNCQNLIGFDAS------HITLTGALPQQLLSITTLSLYLDLSHNLLNGSLLLQV 445 (472)
Q Consensus 374 --~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ls------~~~~~~~~~~~l~~~~~l~~~L~ls~n~l~~~~~~~l 445 (472)
.+++|++|++++|++++ +|..+..+++|+.|+++ +|.+.+.+|..+..+++|+ .|++++|+++ .+|..+
T Consensus 509 ~~~l~~L~~L~Ls~N~l~~-ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~-~L~Ls~N~l~-~ip~~~ 585 (636)
T 4eco_A 509 ATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLT-QLQIGSNDIR-KVNEKI 585 (636)
T ss_dssp TTTCTTCCEEECCSSCCSS-CCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCC-EEECCSSCCC-BCCSCC
T ss_pred hccCCCcCEEECCCCCCCC-cChhhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCC-EEECCCCcCC-ccCHhH
Confidence 78888888888888885 78888888888888884 5666777888888888888 8888888884 566655
Q ss_pred cCCCCCceEeccCCeecccc
Q 040195 446 GNLKNLILLDISGNQFSGVI 465 (472)
Q Consensus 446 ~~~~~L~~L~L~~n~~~~~~ 465 (472)
. ++|+.|+|++|+++..-
T Consensus 586 ~--~~L~~L~Ls~N~l~~~~ 603 (636)
T 4eco_A 586 T--PNISVLDIKDNPNISID 603 (636)
T ss_dssp C--TTCCEEECCSCTTCEEE
T ss_pred h--CcCCEEECcCCCCcccc
Confidence 5 78888888888776433
No 4
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=4.8e-45 Score=372.00 Aligned_cols=428 Identities=20% Similarity=0.197 Sum_probs=301.5
Q ss_pred CCceEEEECCCCccCcccCccccCCCCccEEeccCCcCccCcchhhhcCCCCCEEEccCcccCCCCCcccCCCCCCcEEE
Q 040195 37 HQRVTELDLSNQRIGGVLSPYVGNLSFLRYINLSDNGFHGEIPQEIGNLYRLEKLELSNNSFSGTIPTNLSRCSELTHLR 116 (472)
Q Consensus 37 ~~~l~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~ 116 (472)
.+++++|++++|.+....+..|.++++|++|++++|.+....|++|.++++|++|++++|.+.+..|..|.++++|++|+
T Consensus 32 ~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 111 (606)
T 3t6q_A 32 PNSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLF 111 (606)
T ss_dssp CTTCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEE
T ss_pred CCcCcEEEccCCccCcCChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCcccccChhhhcccccccEee
Confidence 36789999999999988888999999999999999999888889999999999999999999877888999999999999
Q ss_pred cccCcCcccCCccccCCCCCcEEEccccCCCCCCCccccCCCCccEEEecCCccccccccccccCCCcc--EEEccCCcc
Q 040195 117 VANNKLEGQIPKEIGSLLKLQTLALYYNNLTGQLPDFVGNLSALQVIYIRGNSLGGKIPTTLGLLRNLV--YLNVNENQF 194 (472)
Q Consensus 117 l~~~~~~~~~~~~l~~l~~L~~L~l~~~~i~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~--~L~l~~~~l 194 (472)
+++|.++...+..+.++++|++|++++|.+.+.....+..+++|++|++++|.+++..+..++.+++|+ +|++++|.+
T Consensus 112 L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~L~l~~n~l 191 (606)
T 3t6q_A 112 FIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDI 191 (606)
T ss_dssp CTTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECHHHHHTTTTCCSEEEECTTCCC
T ss_pred ccccCcccCCcchhccCCcccEEECCCCcccccCcccccCCcccCEEEcccCcccccChhhhhhhcccceeEEecCCCcc
Confidence 999999866677889999999999999999865445555699999999999999877777788888888 888888876
Q ss_pred ccccccc--------------------------------------------------------------------cccCh
Q 040195 195 WYVSSFS--------------------------------------------------------------------GSLPF 206 (472)
Q Consensus 195 ~~~~~~~--------------------------------------------------------------------~~~~~ 206 (472)
..+.... ..++.
T Consensus 192 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l~~~~~ 271 (606)
T 3t6q_A 192 AGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISS 271 (606)
T ss_dssp CEECTTTTTTCEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTCCCSSCCT
T ss_pred CccChhHhhhccccccccCCchhHHHHhhhccccchhheechhhccccccccChhHhchhhcCceeEEEeecCccCccCH
Confidence 5432100 11222
Q ss_pred hhhcCCCCccEEEcccccccccCCccCcCCCCCCEEecCCCcccccccccccccCCCCeEEcCCCcCCCC-CCCCcchhh
Q 040195 207 DILVNLPNLKKLCIAENNFVGSIPDSLSNASNLELLELAGNQFEGKVSIDFSSLKNLAVLNLERNNLGIG-TANDLGFVT 285 (472)
Q Consensus 207 ~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~-~~~~~~~~~ 285 (472)
..+..+++|++|++++|.++ .+|..+..+++|++|++++|.+....+..+..+++|++|++++|.+... ....+.
T Consensus 272 ~~~~~l~~L~~L~l~~n~l~-~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~--- 347 (606)
T 3t6q_A 272 NTFHCFSGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLE--- 347 (606)
T ss_dssp TTTTTCTTCSEEECTTSCCS-CCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTT---
T ss_pred HHhccccCCCEEeccCCccC-CCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhh---
Confidence 33455666777777777666 4455566677777777777776655555666777777777777665421 111111
Q ss_pred hhcccCCCcCC----------chhhhccccccEEEeecccccCcccccccCccCcceEeccccccccCcch-hhcCCCCC
Q 040195 286 FLTNCSSLKLP----------HSIANLSSTMTHFYIGGNQILGIIHFGIRNLVNLIALGMQSNQLHGTIPD-VIGELKNL 354 (472)
Q Consensus 286 ~~~~~~~l~~~----------~~~~~~~~~l~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~-~~~~~~~L 354 (472)
.+.+++.+.+. .......++++.|++++|.+....+..+..+++|++|++++|.+.+..+. .+..+++|
T Consensus 348 ~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L 427 (606)
T 3t6q_A 348 NLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLL 427 (606)
T ss_dssp TCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTC
T ss_pred ccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccC
Confidence 11112211111 01112223666777776666666666666667777777777766654433 36666777
Q ss_pred cEEEccCCcCccccccchhcccccCeeeccCCccccc---CCcCccCCCCCceEeecCCcccccCChhhhhhcccceEEE
Q 040195 355 QILSLFGNFLHGSIPSSLGNLTKLANLELSSNSLQGN---IPLSVGNCQNLIGFDASHITLTGALPQQLLSITTLSLYLD 431 (472)
Q Consensus 355 ~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~~~~~~~---~~~~~~~~~~L~~L~ls~~~~~~~~~~~l~~~~~l~~~L~ 431 (472)
++|++++|.+.+..+..+..+++|++|++++|++++. .+..+..+++|+.|++++|.+++..|..+..+++|+ .|+
T Consensus 428 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~-~L~ 506 (606)
T 3t6q_A 428 KVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMN-HVD 506 (606)
T ss_dssp CEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTCC-EEE
T ss_pred CEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCccChhhhccccCCC-EEE
Confidence 7777777776666666666677777777777776642 224466677777777777777655566667777777 777
Q ss_pred cCCCcccccccccccCCCCCceEeccCCeeccccCCccc
Q 040195 432 LSHNLLNGSLLLQVGNLKNLILLDISGNQFSGVIPVTLS 470 (472)
Q Consensus 432 ls~n~l~~~~~~~l~~~~~L~~L~L~~n~~~~~~p~~~~ 470 (472)
+++|++++..|+.+.++++| .|++++|.+++..|..|.
T Consensus 507 Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~~ 544 (606)
T 3t6q_A 507 LSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLP 544 (606)
T ss_dssp CCSSCCCGGGGGGGTTCCSC-EEECCSSCCCCCCGGGHH
T ss_pred CCCCccCcCChhHhCccccc-EEECcCCcccccCHhhcc
Confidence 77777776667777777777 777777777766555443
No 5
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=2.1e-44 Score=373.20 Aligned_cols=417 Identities=20% Similarity=0.281 Sum_probs=326.0
Q ss_pred CCCCCC-----Cc--ccc------------cceeeCCCCCceEEEECCCCccCcccCccccCCCCccEEec-cCCcCccC
Q 040195 18 SWNNTI-----NL--CQW------------MGVTCGHRHQRVTELDLSNQRIGGVLSPYVGNLSFLRYINL-SDNGFHGE 77 (472)
Q Consensus 18 ~~~~~~-----~~--~~~------------~~~~~~~~~~~l~~L~l~~~~~~~~~~~~l~~~~~L~~L~L-~~~~~~~~ 77 (472)
+|+... ++ |.| .|+.|.. ..+|+.|+++++.+.+..+..++++++|++|+| ++|.+.+.
T Consensus 285 ~W~~~~~~~~~~~~~C~W~~~~~~~~w~~~~GV~C~~-~~~V~~L~Ls~~~L~G~ip~~l~~L~~L~~LdLss~N~lsG~ 363 (876)
T 4ecn_A 285 NWRYYSGTINNTIHSLNWNFNKELDMWGDQPGVDLDN-NGRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSG 363 (876)
T ss_dssp GCCCCCSSCSSCCCCCSCCCSSCGGGTTCCTTEEECT-TSCEEEEECTTTCCEEEECGGGGGCTTCCEEESCCTTHHHHT
T ss_pred CCCcCCCcccccCCccccccccccccccCcCceEecC-CCCEEEEECccCCCCCcCchHHhccccceEeeeccccccccc
Confidence 786554 45 899 9999976 478999999999999999999999999999999 66532211
Q ss_pred ----------------------------------------------------------------------------cchh
Q 040195 78 ----------------------------------------------------------------------------IPQE 81 (472)
Q Consensus 78 ----------------------------------------------------------------------------~~~~ 81 (472)
+|..
T Consensus 364 ~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~l~~~~l~~~~~~~~i~~~~~l~l~~l~l~~~~N~L~~IP~~ 443 (876)
T 4ecn_A 364 RLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITFISKA 443 (876)
T ss_dssp TCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHHHHHHTCTTSCCCCCCCCCCCCTTTTTCCSCEEEEECGG
T ss_pred ccccccccccccchhHHHHHHHhhhhhhhccCcchhhhHHHHHHhhhCccccccccccccchhhceeccccCcccchhHH
Confidence 5667
Q ss_pred hhcCCCCCEEEccCcccCCC-----------------CCcccC--CCCCCcEEEcccCcCcccCCccccCCCCCcEEEcc
Q 040195 82 IGNLYRLEKLELSNNSFSGT-----------------IPTNLS--RCSELTHLRVANNKLEGQIPKEIGSLLKLQTLALY 142 (472)
Q Consensus 82 ~~~l~~L~~L~L~~~~~~~~-----------------~~~~l~--~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~ 142 (472)
+.++++|++|++++|.+.+. +|..+. ++++|++|++++|.+.+..|..+.++++|++|+++
T Consensus 444 l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls 523 (876)
T 4ecn_A 444 IQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIA 523 (876)
T ss_dssp GGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECT
T ss_pred HhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECc
Confidence 78888888888888888752 677766 88888888888888777788888888888888888
Q ss_pred ccC-CCC-CCCccccCC-------CCccEEEecCCcccccccc--ccccCCCccEEEccCCccccccccccccChhhhcC
Q 040195 143 YNN-LTG-QLPDFVGNL-------SALQVIYIRGNSLGGKIPT--TLGLLRNLVYLNVNENQFWYVSSFSGSLPFDILVN 211 (472)
Q Consensus 143 ~~~-i~~-~~~~~l~~~-------~~L~~L~l~~~~~~~~~~~--~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~ 211 (472)
+|. +++ .+|..+..+ ++|++|++++|.++ .+|. .+..+++|+.|++++|.+. .+| .+..
T Consensus 524 ~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls~N~l~-------~lp--~~~~ 593 (876)
T 4ecn_A 524 CNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVKLGLLDCVHNKVR-------HLE--AFGT 593 (876)
T ss_dssp TCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCTTCCEEECTTSCCC-------BCC--CCCT
T ss_pred CCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhhcCCCCCEEECCCCCcc-------cch--hhcC
Confidence 887 765 466555443 48888888888887 6666 7888888888888888763 333 4567
Q ss_pred CCCccEEEcccccccccCCccCcCCCC-CCEEecCCCcccccccccccccC--CCCeEEcCCCcCCCCCCCCcchhhhhc
Q 040195 212 LPNLKKLCIAENNFVGSIPDSLSNASN-LELLELAGNQFEGKVSIDFSSLK--NLAVLNLERNNLGIGTANDLGFVTFLT 288 (472)
Q Consensus 212 ~~~L~~L~l~~~~l~~~~~~~l~~~~~-L~~L~l~~~~~~~~~~~~l~~l~--~L~~L~l~~~~~~~~~~~~~~~~~~~~ 288 (472)
+++|+.|++++|.+. .+|..+..+++ |+.|++++|.++ ..+..+...+ +|+.|++++|.+.....
T Consensus 594 L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~-~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip---------- 661 (876)
T 4ecn_A 594 NVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLK-YIPNIFNAKSVYVMGSVDFSYNKIGSEGR---------- 661 (876)
T ss_dssp TSEESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCC-SCCSCCCTTCSSCEEEEECCSSCTTTTSS----------
T ss_pred CCcceEEECcCCccc-cchHHHhhccccCCEEECcCCCCC-cCchhhhccccCCCCEEECcCCcCCCccc----------
Confidence 788888888888887 66777888887 888888888887 4555555554 38888888888753210
Q ss_pred ccCCCcCCchhhh-ccccccEEEeecccccCcccccccCccCcceEeccccccccCcchhhcC--------CCCCcEEEc
Q 040195 289 NCSSLKLPHSIAN-LSSTMTHFYIGGNQILGIIHFGIRNLVNLIALGMQSNQLHGTIPDVIGE--------LKNLQILSL 359 (472)
Q Consensus 289 ~~~~l~~~~~~~~-~~~~l~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~--------~~~L~~L~L 359 (472)
.++..... ..++++.|++++|.++.+....+..+++|+.|+|++|.+. .+|..+.. +++|++|+|
T Consensus 662 -----~l~~~l~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~~~~~~~l~nl~~L~~L~L 735 (876)
T 4ecn_A 662 -----NISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMT-SIPENSLKPKDGNYKNTYLLTTIDL 735 (876)
T ss_dssp -----SCSSCTTTCCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCCCS-CCCTTSSSCTTSCCTTGGGCCEEEC
T ss_pred -----cchhhhccccCCCcCEEEccCCcCCccCHHHHccCCCCCEEECCCCcCC-ccChHHhccccccccccCCccEEEC
Confidence 01111111 1237999999999999766666678899999999999998 44443322 238999999
Q ss_pred cCCcCccccccchh--cccccCeeeccCCcccccCCcCccCCCCCceEeecC------CcccccCChhhhhhcccceEEE
Q 040195 360 FGNFLHGSIPSSLG--NLTKLANLELSSNSLQGNIPLSVGNCQNLIGFDASH------ITLTGALPQQLLSITTLSLYLD 431 (472)
Q Consensus 360 ~~n~l~~~~~~~l~--~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ls~------~~~~~~~~~~l~~~~~l~~~L~ 431 (472)
++|++. .+|..+. .+++|+.|++++|++++ +|..+..+++|+.|++++ |.+.+.+|..+..+++|+ .|+
T Consensus 736 s~N~L~-~lp~~l~~~~l~~L~~L~Ls~N~L~~-lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~-~L~ 812 (876)
T 4ecn_A 736 RFNKLT-SLSDDFRATTLPYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLI-QLQ 812 (876)
T ss_dssp CSSCCC-CCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCC-EEE
T ss_pred CCCCCc-cchHHhhhccCCCcCEEEeCCCCCCc-cchhhhcCCCCCEEECCCCCCcccccccccChHHHhcCCCCC-EEE
Confidence 999998 6777776 89999999999999996 788899999999999977 677778899999999999 999
Q ss_pred cCCCcccccccccccCCCCCceEeccCCeeccccCCcc
Q 040195 432 LSHNLLNGSLLLQVGNLKNLILLDISGNQFSGVIPVTL 469 (472)
Q Consensus 432 ls~n~l~~~~~~~l~~~~~L~~L~L~~n~~~~~~p~~~ 469 (472)
+++|++ +.+|..+. ++|+.|+|++|++...-+..|
T Consensus 813 Ls~N~L-~~Ip~~l~--~~L~~LdLs~N~l~~i~~~~~ 847 (876)
T 4ecn_A 813 IGSNDI-RKVDEKLT--PQLYILDIADNPNISIDVTSV 847 (876)
T ss_dssp CCSSCC-CBCCSCCC--SSSCEEECCSCTTCEEECGGG
T ss_pred CCCCCC-CccCHhhc--CCCCEEECCCCCCCccChHHc
Confidence 999999 46777665 699999999999876665554
No 6
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=1.4e-43 Score=361.16 Aligned_cols=418 Identities=21% Similarity=0.175 Sum_probs=326.7
Q ss_pred CCCCCceEEEECCCCccCcccCccccCCCCccEEeccCCcCccCcchhhhcCCCCCEEEccCcccCCCCCcccCCCCCCc
Q 040195 34 GHRHQRVTELDLSNQRIGGVLSPYVGNLSFLRYINLSDNGFHGEIPQEIGNLYRLEKLELSNNSFSGTIPTNLSRCSELT 113 (472)
Q Consensus 34 ~~~~~~l~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~ 113 (472)
....+++++|++++|.+....+..|.++++|++|++++|.+....|.+|.++++|++|++++|.+.+..+..+.++++|+
T Consensus 53 ~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~l~~~~~~~l~~L~ 132 (606)
T 3t6q_A 53 FSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLE 132 (606)
T ss_dssp STTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEECTTSCCSCGGGSCCTTCTTCC
T ss_pred hccCccceEEECCCCccceeChhhccCccccCeeeCCCCcccccChhhhcccccccEeeccccCcccCCcchhccCCccc
Confidence 45668889999999988888888888899999999999888877788888888888998888888765566788888888
Q ss_pred EEEcccCcCcccCCccccCCCCCcEEEccccCCCCCCCccccCCCCcc--EEEecCCcccc-------------------
Q 040195 114 HLRVANNKLEGQIPKEIGSLLKLQTLALYYNNLTGQLPDFVGNLSALQ--VIYIRGNSLGG------------------- 172 (472)
Q Consensus 114 ~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~i~~~~~~~l~~~~~L~--~L~l~~~~~~~------------------- 172 (472)
+|++++|.+.......+..+++|++|++++|.+.+..+..+..+++|+ ++++++|.+++
T Consensus 133 ~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~L~l~~n~l~~~~~~~~~~~~L~~L~l~~~ 212 (606)
T 3t6q_A 133 SLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGT 212 (606)
T ss_dssp EEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECHHHHHTTTTCCSEEEECTTCCCCEECTTTTTTCEEEEEECTTC
T ss_pred EEECCCCcccccCcccccCCcccCEEEcccCcccccChhhhhhhcccceeEEecCCCccCccChhHhhhccccccccCCc
Confidence 888888888754334445578888888888877755556666666666 55555555432
Q ss_pred --------------------------------------------------------ccccccccCCCccEEEccCCcccc
Q 040195 173 --------------------------------------------------------KIPTTLGLLRNLVYLNVNENQFWY 196 (472)
Q Consensus 173 --------------------------------------------------------~~~~~l~~~~~L~~L~l~~~~l~~ 196 (472)
..+..++.+++|++|++++|.+..
T Consensus 213 ~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~ 292 (606)
T 3t6q_A 213 QNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLSE 292 (606)
T ss_dssp SCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSCCSC
T ss_pred hhHHHHhhhccccchhheechhhccccccccChhHhchhhcCceeEEEeecCccCccCHHHhccccCCCEEeccCCccCC
Confidence 222335566778888888877643
Q ss_pred ccccccccChhhhcCCCCccEEEcccccccccCCccCcCCCCCCEEecCCCcccccc-cccccccCCCCeEEcCCCcCCC
Q 040195 197 VSSFSGSLPFDILVNLPNLKKLCIAENNFVGSIPDSLSNASNLELLELAGNQFEGKV-SIDFSSLKNLAVLNLERNNLGI 275 (472)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~-~~~l~~l~~L~~L~l~~~~~~~ 275 (472)
+|. .+..+++|++|++++|.+.+..+..+..+++|++|++++|.+.... ...+..+++|++|++++|.+..
T Consensus 293 -------lp~-~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~ 364 (606)
T 3t6q_A 293 -------LPS-GLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIET 364 (606)
T ss_dssp -------CCS-SCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCE
T ss_pred -------CCh-hhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhhccCcCCEEECCCCcccc
Confidence 332 2457788999999999888777777888899999999988876433 3457888889999999888764
Q ss_pred CC--CCCcchhhhhcccCCCc--------CCchhhhccccccEEEeecccccCccc-ccccCccCcceEeccccccccCc
Q 040195 276 GT--ANDLGFVTFLTNCSSLK--------LPHSIANLSSTMTHFYIGGNQILGIIH-FGIRNLVNLIALGMQSNQLHGTI 344 (472)
Q Consensus 276 ~~--~~~~~~~~~~~~~~~l~--------~~~~~~~~~~~l~~l~l~~~~~~~~~~-~~l~~~~~L~~L~l~~~~i~~~~ 344 (472)
.. ...+ ....+++.+. .+.......++++.|++++|.+....+ ..+..+++|++|++++|.+.+..
T Consensus 365 ~~~~~~~~---~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 441 (606)
T 3t6q_A 365 SDCCNLQL---RNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISS 441 (606)
T ss_dssp EEESTTTT---TTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTC
T ss_pred ccCcchhc---ccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCccCCcC
Confidence 32 1111 1112222222 222222334589999999999987654 34889999999999999999888
Q ss_pred chhhcCCCCCcEEEccCCcCccc---cccchhcccccCeeeccCCcccccCCcCccCCCCCceEeecCCcccccCChhhh
Q 040195 345 PDVIGELKNLQILSLFGNFLHGS---IPSSLGNLTKLANLELSSNSLQGNIPLSVGNCQNLIGFDASHITLTGALPQQLL 421 (472)
Q Consensus 345 ~~~~~~~~~L~~L~L~~n~l~~~---~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ls~~~~~~~~~~~l~ 421 (472)
+..+..+++|++|++++|.+.+. .+..+..+++|++|++++|.+++..+..+..+++|+.|++++|++++..|..+.
T Consensus 442 ~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~ 521 (606)
T 3t6q_A 442 EQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALS 521 (606)
T ss_dssp TTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCGGGGGGGT
T ss_pred HHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCccChhhhccccCCCEEECCCCccCcCChhHhC
Confidence 88999999999999999999763 235688999999999999999988889999999999999999999988888999
Q ss_pred hhcccceEEEcCCCcccccccccccCCCCCceEeccCCeeccc
Q 040195 422 SITTLSLYLDLSHNLLNGSLLLQVGNLKNLILLDISGNQFSGV 464 (472)
Q Consensus 422 ~~~~l~~~L~ls~n~l~~~~~~~l~~~~~L~~L~L~~n~~~~~ 464 (472)
+++.+ .|++++|++++..|..+..+++|+.|++++|+++..
T Consensus 522 ~l~~L--~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~ 562 (606)
T 3t6q_A 522 HLKGI--YLNLASNHISIILPSLLPILSQQRTINLRQNPLDCT 562 (606)
T ss_dssp TCCSC--EEECCSSCCCCCCGGGHHHHHTSSEEECTTCCEECS
T ss_pred ccccc--EEECcCCcccccCHhhcccCCCCCEEeCCCCCcccc
Confidence 99888 699999999998888899999999999999999743
No 7
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=2.6e-43 Score=359.27 Aligned_cols=419 Identities=21% Similarity=0.202 Sum_probs=284.6
Q ss_pred CCceEEEECCCCccCcccCccccCCCCccEEeccCCcCccCcchhhhcCCCCCEEEccCcccCCCCCcccCCCCCCcEEE
Q 040195 37 HQRVTELDLSNQRIGGVLSPYVGNLSFLRYINLSDNGFHGEIPQEIGNLYRLEKLELSNNSFSGTIPTNLSRCSELTHLR 116 (472)
Q Consensus 37 ~~~l~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~ 116 (472)
.+++++|++++|.+.+..+..|.++++|++|++++|.+....+.+|.++++|++|++++|.+.+..|..|.++++|++|+
T Consensus 31 ~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~ 110 (606)
T 3vq2_A 31 PSSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLV 110 (606)
T ss_dssp CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEE
T ss_pred CCCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccChhhcCCcccCCEEE
Confidence 37899999999999888888899999999999999999887888899999999999999999877788999999999999
Q ss_pred cccCcCcccCCccccCCCCCcEEEccccCCCC-CCCccccCCCCccEEEecCCccccccccccccCCCcc----EEEccC
Q 040195 117 VANNKLEGQIPKEIGSLLKLQTLALYYNNLTG-QLPDFVGNLSALQVIYIRGNSLGGKIPTTLGLLRNLV----YLNVNE 191 (472)
Q Consensus 117 l~~~~~~~~~~~~l~~l~~L~~L~l~~~~i~~-~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~----~L~l~~ 191 (472)
+++|.+....+..++++++|++|++++|.+.+ ..|..+..+++|++|++++|.+++..+..++.+.+|+ ++++++
T Consensus 111 L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~~l~~L~l~~ 190 (606)
T 3vq2_A 111 AVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSL 190 (606)
T ss_dssp CTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECTTTTHHHHHCTTCCCEEECTT
T ss_pred ccCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcceecChhhhhhhhccccccceeeccC
Confidence 99999986666789999999999999999875 4688899999999999999998866665555444333 555555
Q ss_pred Cccccccc------------------------------------------------------------------------
Q 040195 192 NQFWYVSS------------------------------------------------------------------------ 199 (472)
Q Consensus 192 ~~l~~~~~------------------------------------------------------------------------ 199 (472)
|.+..+..
T Consensus 191 n~l~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~ 270 (606)
T 3vq2_A 191 NPIDFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTY 270 (606)
T ss_dssp CCCCEECTTTTTTCEEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCGGGGTTGGGSEEEEEEECC
T ss_pred CCcceeCcccccCceeeeeeccCCccchhHHHHHhccccccccccccccccccCCcccccChHHhhhhhhccHhheeccc
Confidence 55432221
Q ss_pred ---cccccChhhhcCCCCccEEEcccccccccCCccCcCCCCCCEEecCCCcccccccccccccCCCCeEEcCCCcCCCC
Q 040195 200 ---FSGSLPFDILVNLPNLKKLCIAENNFVGSIPDSLSNASNLELLELAGNQFEGKVSIDFSSLKNLAVLNLERNNLGIG 276 (472)
Q Consensus 200 ---~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~ 276 (472)
+.+..+. +..+++|+.|+++++.+.. ++ .+..+++|++|++++|.+. ..+ .+ .+++|++|++++|.....
T Consensus 271 ~~~~~~~~~~--~~~l~~L~~L~l~~~~~~~-l~-~l~~~~~L~~L~l~~n~l~-~lp-~~-~l~~L~~L~l~~n~~~~~ 343 (606)
T 3vq2_A 271 TNDFSDDIVK--FHCLANVSAMSLAGVSIKY-LE-DVPKHFKWQSLSIIRCQLK-QFP-TL-DLPFLKSLTLTMNKGSIS 343 (606)
T ss_dssp CTTCCGGGGS--CGGGTTCSEEEEESCCCCC-CC-CCCTTCCCSEEEEESCCCS-SCC-CC-CCSSCCEEEEESCSSCEE
T ss_pred cccccccccc--cccCCCCCEEEecCccchh-hh-hccccccCCEEEcccccCc-ccc-cC-CCCccceeeccCCcCccc
Confidence 0011111 3344556666666665543 23 4556666666666666663 333 23 555666666655532211
Q ss_pred CCCCcchhhhhcccCCCcCC----------chhhhccccccEEEeecccccCcccccccCccCcceEeccccccccCcc-
Q 040195 277 TANDLGFVTFLTNCSSLKLP----------HSIANLSSTMTHFYIGGNQILGIIHFGIRNLVNLIALGMQSNQLHGTIP- 345 (472)
Q Consensus 277 ~~~~~~~~~~~~~~~~l~~~----------~~~~~~~~~l~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~- 345 (472)
. .+ ....+++.+.+. .......++++.|++++|.++... ..+..+++|+.|++++|.+.+..+
T Consensus 344 ~--~~---~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~ 417 (606)
T 3vq2_A 344 F--KK---VALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMS-ANFMGLEELQHLDFQHSTLKRVTEF 417 (606)
T ss_dssp C--CC---CCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEEEC-CCCTTCTTCCEEECTTSEEESTTTT
T ss_pred h--hh---ccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCccccch-hhccCCCCCCeeECCCCccCCccCh
Confidence 0 00 011111111111 111122346777777777666543 556667777777777777765555
Q ss_pred hhhcCCCCCcEEEccCCcCccccccchhcccccCeeeccCCcccc-cCCcCccCCCCCceEeecCCcccccCChhhhhhc
Q 040195 346 DVIGELKNLQILSLFGNFLHGSIPSSLGNLTKLANLELSSNSLQG-NIPLSVGNCQNLIGFDASHITLTGALPQQLLSIT 424 (472)
Q Consensus 346 ~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~~~~~~-~~~~~~~~~~~L~~L~ls~~~~~~~~~~~l~~~~ 424 (472)
..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+++ .++..+..+++|+.|++++|.+++..|..+..++
T Consensus 418 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~ 497 (606)
T 3vq2_A 418 SAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLH 497 (606)
T ss_dssp TTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCT
T ss_pred hhhhccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccc
Confidence 456667777777777777766666666777777777777777765 2566667777777777777777655566666777
Q ss_pred ccceEEEcCCCcccccccccccCCCCCceEeccCCeeccccCCccc
Q 040195 425 TLSLYLDLSHNLLNGSLLLQVGNLKNLILLDISGNQFSGVIPVTLS 470 (472)
Q Consensus 425 ~l~~~L~ls~n~l~~~~~~~l~~~~~L~~L~L~~n~~~~~~p~~~~ 470 (472)
+|+ .|++++|++++..|..+.++++|+.|+|++|+++ .+|..+.
T Consensus 498 ~L~-~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~p~~~~ 541 (606)
T 3vq2_A 498 RLQ-LLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIE-TSKGILQ 541 (606)
T ss_dssp TCC-EEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCC-CEESCGG
T ss_pred cCC-EEECCCCcCCCcCHHHccCCCcCCEEECCCCcCc-ccCHhHh
Confidence 777 7777777777666677777777777777777766 4554443
No 8
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=100.00 E-value=6.5e-43 Score=353.88 Aligned_cols=419 Identities=21% Similarity=0.212 Sum_probs=325.3
Q ss_pred CCceEEEECCCCccCcccCccccCCCCccEEeccCCcCccCcchhhhcCCCCCEEEccCcccCCCCCcccCCCCCCcEEE
Q 040195 37 HQRVTELDLSNQRIGGVLSPYVGNLSFLRYINLSDNGFHGEIPQEIGNLYRLEKLELSNNSFSGTIPTNLSRCSELTHLR 116 (472)
Q Consensus 37 ~~~l~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~ 116 (472)
.+++++|++++|.+.+..+..|..+++|++|++++|.+....+++|.++++|++|++++|.+.+..+..|..+++|++|+
T Consensus 27 ~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 106 (570)
T 2z63_A 27 PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLV 106 (570)
T ss_dssp CSSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEE
T ss_pred cccccEEEccCCccCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhhhcCcccccccc
Confidence 36799999999999888888899999999999999998877788899999999999999998877778899999999999
Q ss_pred cccCcCcccCCccccCCCCCcEEEccccCCCC-CCCccccCCCCccEEEecCCccccccccccccCCCc----cEEEccC
Q 040195 117 VANNKLEGQIPKEIGSLLKLQTLALYYNNLTG-QLPDFVGNLSALQVIYIRGNSLGGKIPTTLGLLRNL----VYLNVNE 191 (472)
Q Consensus 117 l~~~~~~~~~~~~l~~l~~L~~L~l~~~~i~~-~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L----~~L~l~~ 191 (472)
+++|.++...+..++++++|++|++++|.+.+ ..|..+..+++|++|++++|.+++..+..++.+++| +++++++
T Consensus 107 L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~~~~~L~l~~ 186 (570)
T 2z63_A 107 AVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSL 186 (570)
T ss_dssp CTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGHHHHTCTTCCCEEECTT
T ss_pred ccccccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccceecHHHccchhccchhhhhcccCC
Confidence 99999885555568899999999999999886 368889999999999999999887666777777777 7888888
Q ss_pred Cccccccccc----------------------------------------------------------------------
Q 040195 192 NQFWYVSSFS---------------------------------------------------------------------- 201 (472)
Q Consensus 192 ~~l~~~~~~~---------------------------------------------------------------------- 201 (472)
|.+..+....
T Consensus 187 n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~ 266 (570)
T 2z63_A 187 NPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAY 266 (570)
T ss_dssp CCCCEECTTTTTTCEEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGGSEEEEEEEEE
T ss_pred CCceecCHHHhccCcceeEecccccccccchhhhhcCccccceeeeccccccCchhhhhcchhhhccccccchhhhhhhc
Confidence 7654332100
Q ss_pred ----cccChhhhcCCCCccEEEcccccccccCCccCcCCCCCCEEecCCCcccccccccccccCCCCeEEcCCCcCCCCC
Q 040195 202 ----GSLPFDILVNLPNLKKLCIAENNFVGSIPDSLSNASNLELLELAGNQFEGKVSIDFSSLKNLAVLNLERNNLGIGT 277 (472)
Q Consensus 202 ----~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~ 277 (472)
.......+..+++|++|++++|.+. .+|..+..+ +|++|++++|.+.. .+. ..+++|++|++++|.+....
T Consensus 267 ~~~~~~~~~~~~~~l~~L~~L~l~~~~l~-~l~~~~~~~-~L~~L~l~~n~~~~-l~~--~~l~~L~~L~l~~n~~~~~~ 341 (570)
T 2z63_A 267 LDYYLDDIIDLFNCLTNVSSFSLVSVTIE-RVKDFSYNF-GWQHLELVNCKFGQ-FPT--LKLKSLKRLTFTSNKGGNAF 341 (570)
T ss_dssp TTEEESCSTTTTGGGTTCSEEEEESCEEC-SCCBCCSCC-CCSEEEEESCBCSS-CCB--CBCSSCCEEEEESCBSCCBC
T ss_pred chhhhhhchhhhcCcCcccEEEecCccch-hhhhhhccC-CccEEeeccCcccc-cCc--ccccccCEEeCcCCcccccc
Confidence 0001123344567777777777666 355556666 77777777776652 222 45677777777777654321
Q ss_pred CCCcchhhhhcccCCCcCC----------chhhhccccccEEEeecccccCcccccccCccCcceEeccccccccCcc-h
Q 040195 278 ANDLGFVTFLTNCSSLKLP----------HSIANLSSTMTHFYIGGNQILGIIHFGIRNLVNLIALGMQSNQLHGTIP-D 346 (472)
Q Consensus 278 ~~~~~~~~~~~~~~~l~~~----------~~~~~~~~~l~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~-~ 346 (472)
.. ....+++.+.+. .......++++.|++++|.+....+. +..+++|++|++++|.+.+..+ .
T Consensus 342 ~~-----~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~ 415 (570)
T 2z63_A 342 SE-----VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSN-FLGLEQLEHLDFQHSNLKQMSEFS 415 (570)
T ss_dssp CC-----CBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEE-EETCTTCCEEECTTSEEESCTTSC
T ss_pred cc-----ccCCCCCEEeCcCCccCccccccccccccCccCEEECCCCcccccccc-ccccCCCCEEEccCCccccccchh
Confidence 11 112222222221 11122335888999998888876554 8888999999999998886655 4
Q ss_pred hhcCCCCCcEEEccCCcCccccccchhcccccCeeeccCCccc-ccCCcCccCCCCCceEeecCCcccccCChhhhhhcc
Q 040195 347 VIGELKNLQILSLFGNFLHGSIPSSLGNLTKLANLELSSNSLQ-GNIPLSVGNCQNLIGFDASHITLTGALPQQLLSITT 425 (472)
Q Consensus 347 ~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~~~~~-~~~~~~~~~~~~L~~L~ls~~~~~~~~~~~l~~~~~ 425 (472)
.+..+++|++|++++|.+.+..+..+..+++|++|++++|.++ +.+|..+..+++|++|++++|.+++..|..+..+++
T Consensus 416 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~ 495 (570)
T 2z63_A 416 VFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSS 495 (570)
T ss_dssp TTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTT
T ss_pred hhhcCCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccC
Confidence 6788999999999999998888888889999999999999987 468888999999999999999998777888889999
Q ss_pred cceEEEcCCCcccccccccccCCCCCceEeccCCeeccccCC
Q 040195 426 LSLYLDLSHNLLNGSLLLQVGNLKNLILLDISGNQFSGVIPV 467 (472)
Q Consensus 426 l~~~L~ls~n~l~~~~~~~l~~~~~L~~L~L~~n~~~~~~p~ 467 (472)
|+ .|++++|++++..+..|.++++|+.|++++|+++...|.
T Consensus 496 L~-~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~ 536 (570)
T 2z63_A 496 LQ-VLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR 536 (570)
T ss_dssp CC-EEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTT
T ss_pred CC-EEeCCCCcCCCCCHHHhhcccCCcEEEecCCcccCCCcc
Confidence 99 999999999988888889999999999999999877765
No 9
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=8.8e-42 Score=352.53 Aligned_cols=423 Identities=20% Similarity=0.214 Sum_probs=301.8
Q ss_pred CceEEEECCCCccCcccCccccCCCCccEEeccCCcCccCcchhhhcCCCCCEEEccCcccCCCCCcccCCCCCCcEEEc
Q 040195 38 QRVTELDLSNQRIGGVLSPYVGNLSFLRYINLSDNGFHGEIPQEIGNLYRLEKLELSNNSFSGTIPTNLSRCSELTHLRV 117 (472)
Q Consensus 38 ~~l~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l 117 (472)
+++++|++++|.+....+..|.++++|++|++++|.+....++++.++++|++|++++|.+....+..|.++++|++|++
T Consensus 25 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L 104 (680)
T 1ziw_A 25 TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHL 104 (680)
T ss_dssp TTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEEC
T ss_pred CCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCccChhhhccCCCCCEEEC
Confidence 68999999999998888888999999999999999998888889999999999999999988655557999999999999
Q ss_pred ccCcCcccCCccccCCCCCcEEEccccCCCCCCCccccCCCCccEEEecCCccccccccccc--cCCCccEEEccCCccc
Q 040195 118 ANNKLEGQIPKEIGSLLKLQTLALYYNNLTGQLPDFVGNLSALQVIYIRGNSLGGKIPTTLG--LLRNLVYLNVNENQFW 195 (472)
Q Consensus 118 ~~~~~~~~~~~~l~~l~~L~~L~l~~~~i~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~--~~~~L~~L~l~~~~l~ 195 (472)
++|.+....+..+.++++|++|++++|.+.+..+..+..+++|++|++++|.+++..+..+. .+++|++|++++|.+.
T Consensus 105 ~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~ 184 (680)
T 1ziw_A 105 MSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIK 184 (680)
T ss_dssp CSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTCCCC
T ss_pred CCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccccCHHHhhccccccccEEECCCCccc
Confidence 99999866667899999999999999999887788888999999999999988866555543 4588999999998775
Q ss_pred cccccc-cccCh-------------h------hhcCCCCccEEEcccccccccCCccCcCCCC--CCEEecCCCcccccc
Q 040195 196 YVSSFS-GSLPF-------------D------ILVNLPNLKKLCIAENNFVGSIPDSLSNASN--LELLELAGNQFEGKV 253 (472)
Q Consensus 196 ~~~~~~-~~~~~-------------~------~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~--L~~L~l~~~~~~~~~ 253 (472)
.+.... ..+.. . .....++|++|++++|.+.+..+..+..++. |++|++++|.++...
T Consensus 185 ~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~~ 264 (680)
T 1ziw_A 185 EFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVG 264 (680)
T ss_dssp CBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEECTTSCCCEEC
T ss_pred ccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhhccCcCCCCEEECCCCCcCccC
Confidence 442100 00000 0 0001245666666666666555555555433 666666666666555
Q ss_pred cccccccCCCCeEEcCCCcCCCCCCCCcchhhhhcccCCCcC--------------Cc---hhhhccccccEEEeecccc
Q 040195 254 SIDFSSLKNLAVLNLERNNLGIGTANDLGFVTFLTNCSSLKL--------------PH---SIANLSSTMTHFYIGGNQI 316 (472)
Q Consensus 254 ~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~--------------~~---~~~~~~~~l~~l~l~~~~~ 316 (472)
+..+..+++|++|++++|.+.......+... .+++.+.+ |. ......++++.+++++|.+
T Consensus 265 ~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l---~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~l 341 (680)
T 1ziw_A 265 NDSFAWLPQLEYFFLEYNNIQHLFSHSLHGL---FNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDI 341 (680)
T ss_dssp TTTTTTCTTCCEEECCSCCBSEECTTTTTTC---TTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEEECCSCCB
T ss_pred cccccCcccccEeeCCCCccCccChhhhcCC---CCccEEeccchhhhcccccccccccChhhcccCCCCCEEECCCCcc
Confidence 5556666666666666666543222111111 11111111 10 1122234677777777776
Q ss_pred cCcccccccCccCcceEeccc----------------------------cccccCcchhhcCCCCCcEEEccCCcCcccc
Q 040195 317 LGIIHFGIRNLVNLIALGMQS----------------------------NQLHGTIPDVIGELKNLQILSLFGNFLHGSI 368 (472)
Q Consensus 317 ~~~~~~~l~~~~~L~~L~l~~----------------------------~~i~~~~~~~~~~~~~L~~L~L~~n~l~~~~ 368 (472)
....+..|..+++|++|++++ |.+.+..+.++..+++|++|++++|.+.+.+
T Consensus 342 ~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~ 421 (680)
T 1ziw_A 342 PGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQEL 421 (680)
T ss_dssp CCCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEEC
T ss_pred CCCChhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCcccc
Confidence 666555566665555555554 4455455566777777888888877776544
Q ss_pred c-cchhcccccCeeeccCCcccccCCcCccCCCCCceEeecCCccc--ccCChhhhhhcccceEEEcCCCcccccccccc
Q 040195 369 P-SSLGNLTKLANLELSSNSLQGNIPLSVGNCQNLIGFDASHITLT--GALPQQLLSITTLSLYLDLSHNLLNGSLLLQV 445 (472)
Q Consensus 369 ~-~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ls~~~~~--~~~~~~l~~~~~l~~~L~ls~n~l~~~~~~~l 445 (472)
+ ..+..+++|++|++++|++++..+..+..+++|+.|++++|.+. +..|..+..+++++ .|++++|++++..+..|
T Consensus 422 ~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~-~L~Ls~N~l~~i~~~~~ 500 (680)
T 1ziw_A 422 TGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLT-ILDLSNNNIANINDDML 500 (680)
T ss_dssp CSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCC-EEECCSSCCCCCCTTTT
T ss_pred CcccccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCcccccCCCCC-EEECCCCCCCcCChhhh
Confidence 4 56677778888888888777666677777888888888888775 45677888888888 99999999988777788
Q ss_pred cCCCCCceEeccCCeeccc
Q 040195 446 GNLKNLILLDISGNQFSGV 464 (472)
Q Consensus 446 ~~~~~L~~L~L~~n~~~~~ 464 (472)
.++++|+.|++++|.+++.
T Consensus 501 ~~l~~L~~L~Ls~N~l~~~ 519 (680)
T 1ziw_A 501 EGLEKLEILDLQHNNLARL 519 (680)
T ss_dssp TTCTTCCEEECCSSCCGGG
T ss_pred ccccccCEEeCCCCCcccc
Confidence 8999999999999998754
No 10
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=1.8e-41 Score=350.14 Aligned_cols=145 Identities=20% Similarity=0.206 Sum_probs=110.0
Q ss_pred CCCCCceEEEECCCCccCcccCccccCCCCccEEeccCCcCccCcchhhhcCCCCCEEEccCcccCCCCCcccCCCCCCc
Q 040195 34 GHRHQRVTELDLSNQRIGGVLSPYVGNLSFLRYINLSDNGFHGEIPQEIGNLYRLEKLELSNNSFSGTIPTNLSRCSELT 113 (472)
Q Consensus 34 ~~~~~~l~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~ 113 (472)
....+++++|++++|.+.+..+..+.++++|++|++++|.+....+.+|.++++|++|++++|.+.+..+..|.++++|+
T Consensus 45 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 124 (680)
T 1ziw_A 45 FTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLI 124 (680)
T ss_dssp GGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCC
T ss_pred HhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCccChhhhccCCCCCEEECCCCccCccChhHccccCCCC
Confidence 34457888888888888888788888888888888888888866556788888888888888888766667788888888
Q ss_pred EEEcccCcCcccCCccccCCCCCcEEEccccCCCCCCCcccc--CCCCccEEEecCCcccccccccc
Q 040195 114 HLRVANNKLEGQIPKEIGSLLKLQTLALYYNNLTGQLPDFVG--NLSALQVIYIRGNSLGGKIPTTL 178 (472)
Q Consensus 114 ~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~i~~~~~~~l~--~~~~L~~L~l~~~~~~~~~~~~l 178 (472)
+|++++|.+++..+..+.++++|++|++++|.+++..+..+. .+++|++|++++|.+++..+..+
T Consensus 125 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~ 191 (680)
T 1ziw_A 125 TLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCF 191 (680)
T ss_dssp EEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTCCCCCBCTTGG
T ss_pred EEECCCCcccccCchhhcccccCCEEEccCCcccccCHHHhhccccccccEEECCCCcccccChhhh
Confidence 888888888766677777888888888888877755444433 44677777777776654444333
No 11
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=1.2e-41 Score=346.90 Aligned_cols=412 Identities=19% Similarity=0.191 Sum_probs=315.2
Q ss_pred CCCCCceEEEECCCCccCcccCccccCCCCccEEeccCCcCccCcchhhhcCCCCCEEEccCcccCCCCCcccCCCCCCc
Q 040195 34 GHRHQRVTELDLSNQRIGGVLSPYVGNLSFLRYINLSDNGFHGEIPQEIGNLYRLEKLELSNNSFSGTIPTNLSRCSELT 113 (472)
Q Consensus 34 ~~~~~~l~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~ 113 (472)
....+++++|++++|.+.+..+..|.++++|++|++++|.+....|++|.++++|++|++++|.+.+..+..++++++|+
T Consensus 52 ~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 131 (606)
T 3vq2_A 52 FSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLK 131 (606)
T ss_dssp TTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCC
T ss_pred ccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccChhhcCCcccCCEEEccCCccccccccccCCCCCCC
Confidence 45678999999999999988888999999999999999999988899999999999999999999877667899999999
Q ss_pred EEEcccCcCcc-cCCccccCCCCCcEEEccccCCCCCCCccccCCC---------------------------CccEEEe
Q 040195 114 HLRVANNKLEG-QIPKEIGSLLKLQTLALYYNNLTGQLPDFVGNLS---------------------------ALQVIYI 165 (472)
Q Consensus 114 ~L~l~~~~~~~-~~~~~l~~l~~L~~L~l~~~~i~~~~~~~l~~~~---------------------------~L~~L~l 165 (472)
+|++++|.+.. ..|..+.++++|++|++++|.+++..+..+..++ +|++|++
T Consensus 132 ~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L 211 (606)
T 3vq2_A 132 KLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGIKLHELTL 211 (606)
T ss_dssp EEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECTTTTHHHHHCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEE
T ss_pred EEeCCCCcccceechHhHhhcCCCCEEEccCCcceecChhhhhhhhccccccceeeccCCCcceeCcccccCceeeeeec
Confidence 99999999875 4688899999999999999988765554443322 4455555
Q ss_pred cCCccc----------------------------------------------------------cccccccccCCCccEE
Q 040195 166 RGNSLG----------------------------------------------------------GKIPTTLGLLRNLVYL 187 (472)
Q Consensus 166 ~~~~~~----------------------------------------------------------~~~~~~l~~~~~L~~L 187 (472)
++|.+. +..+. +..+++|+.|
T Consensus 212 ~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~-~~~l~~L~~L 290 (606)
T 3vq2_A 212 RGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVK-FHCLANVSAM 290 (606)
T ss_dssp ESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCGGGGTTGGGSEEEEEEECCCTTCCGGGGS-CGGGTTCSEE
T ss_pred cCCccchhHHHHHhccccccccccccccccccCCcccccChHHhhhhhhccHhheeccccccccccccc-cccCCCCCEE
Confidence 554332 00111 3345666666
Q ss_pred EccCCccccccccccccChhhhcCCCCccEEEcccccccccCCccCcCCCCCCEEecCCCcccccccccccccCCCCeEE
Q 040195 188 NVNENQFWYVSSFSGSLPFDILVNLPNLKKLCIAENNFVGSIPDSLSNASNLELLELAGNQFEGKVSIDFSSLKNLAVLN 267 (472)
Q Consensus 188 ~l~~~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~ 267 (472)
+++++.+..+ + .+..+++|++|++++|.+. .+|. + .+++|++|++++|...... .+..+++|++|+
T Consensus 291 ~l~~~~~~~l-------~--~l~~~~~L~~L~l~~n~l~-~lp~-~-~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ 356 (606)
T 3vq2_A 291 SLAGVSIKYL-------E--DVPKHFKWQSLSIIRCQLK-QFPT-L-DLPFLKSLTLTMNKGSISF--KKVALPSLSYLD 356 (606)
T ss_dssp EEESCCCCCC-------C--CCCTTCCCSEEEEESCCCS-SCCC-C-CCSSCCEEEEESCSSCEEC--CCCCCTTCCEEE
T ss_pred EecCccchhh-------h--hccccccCCEEEcccccCc-cccc-C-CCCccceeeccCCcCccch--hhccCCCCCEEE
Confidence 6666665333 2 3446677777888777773 4453 3 6667777777666433222 445666666666
Q ss_pred cCCCcCCCCCCCCcchhhhhcccCCCc--------CCchhhhccccccEEEeecccccCccc-ccccCccCcceEecccc
Q 040195 268 LERNNLGIGTANDLGFVTFLTNCSSLK--------LPHSIANLSSTMTHFYIGGNQILGIIH-FGIRNLVNLIALGMQSN 338 (472)
Q Consensus 268 l~~~~~~~~~~~~~~~~~~~~~~~~l~--------~~~~~~~~~~~l~~l~l~~~~~~~~~~-~~l~~~~~L~~L~l~~~ 338 (472)
+++|.+....... .......+++.+. ++..+.. .++++.|++++|.+....+ ..+..+++|++|++++|
T Consensus 357 ls~n~l~~~~~~~-~~~~~~~~L~~L~L~~n~l~~~~~~~~~-l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n 434 (606)
T 3vq2_A 357 LSRNALSFSGCCS-YSDLGTNSLRHLDLSFNGAIIMSANFMG-LEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYT 434 (606)
T ss_dssp CCSSCEEEEEECC-HHHHCCSCCCEEECCSCSEEEECCCCTT-CTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTS
T ss_pred CcCCccCCCcchh-hhhccCCcccEeECCCCccccchhhccC-CCCCCeeECCCCccCCccChhhhhccccCCEEECcCC
Confidence 6666654221000 0111111222221 2222222 3489999999999998776 68899999999999999
Q ss_pred ccccCcchhhcCCCCCcEEEccCCcCcc-ccccchhcccccCeeeccCCcccccCCcCccCCCCCceEeecCCcccccCC
Q 040195 339 QLHGTIPDVIGELKNLQILSLFGNFLHG-SIPSSLGNLTKLANLELSSNSLQGNIPLSVGNCQNLIGFDASHITLTGALP 417 (472)
Q Consensus 339 ~i~~~~~~~~~~~~~L~~L~L~~n~l~~-~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ls~~~~~~~~~ 417 (472)
.+.+..+..+..+++|++|++++|.+.+ ..+..+..+++|++|++++|++++..+..+..+++|+.|++++|++++..|
T Consensus 435 ~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~ 514 (606)
T 3vq2_A 435 NTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDS 514 (606)
T ss_dssp CCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEG
T ss_pred CCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCH
Confidence 9998889999999999999999999987 478889999999999999999998888899999999999999999997778
Q ss_pred hhhhhhcccceEEEcCCCcccccccccccCCC-CCceEeccCCeeccc
Q 040195 418 QQLLSITTLSLYLDLSHNLLNGSLLLQVGNLK-NLILLDISGNQFSGV 464 (472)
Q Consensus 418 ~~l~~~~~l~~~L~ls~n~l~~~~~~~l~~~~-~L~~L~L~~n~~~~~ 464 (472)
..+..+++|+ .|++++|+++ .+|..+..++ +|+.|++++|++...
T Consensus 515 ~~~~~l~~L~-~L~l~~N~l~-~~p~~~~~l~~~L~~l~l~~N~~~c~ 560 (606)
T 3vq2_A 515 SHYNQLYSLS-TLDCSFNRIE-TSKGILQHFPKSLAFFNLTNNSVACI 560 (606)
T ss_dssp GGTTTCTTCC-EEECTTSCCC-CEESCGGGSCTTCCEEECCSCCCCCS
T ss_pred HHccCCCcCC-EEECCCCcCc-ccCHhHhhhcccCcEEEccCCCcccC
Confidence 9999999999 9999999999 5676788886 699999999998743
No 12
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=100.00 E-value=6.1e-42 Score=345.05 Aligned_cols=417 Identities=18% Similarity=0.163 Sum_probs=288.8
Q ss_pred CceEEEECCCCccCcccCccccCCCCccEEeccCCcCccCcchhhhcCCCCCEEEccCcccCCCCCcccCCCCCCcEEEc
Q 040195 38 QRVTELDLSNQRIGGVLSPYVGNLSFLRYINLSDNGFHGEIPQEIGNLYRLEKLELSNNSFSGTIPTNLSRCSELTHLRV 117 (472)
Q Consensus 38 ~~l~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l 117 (472)
+++++|++++|.+.+..+..+..+++|++|++++|.+....+++|.++++|++|++++|.+.+..+..|..+++|++|++
T Consensus 26 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 105 (549)
T 2z81_A 26 AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNL 105 (549)
T ss_dssp TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEEC
T ss_pred CCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEEC
Confidence 68999999999999888889999999999999999999888889999999999999999998766667999999999999
Q ss_pred ccCcCcc-cCCccccCCCCCcEEEccccCCCCCC-CccccCCCCccEEEecCCccccccccccccCCCccEEEccCCccc
Q 040195 118 ANNKLEG-QIPKEIGSLLKLQTLALYYNNLTGQL-PDFVGNLSALQVIYIRGNSLGGKIPTTLGLLRNLVYLNVNENQFW 195 (472)
Q Consensus 118 ~~~~~~~-~~~~~l~~l~~L~~L~l~~~~i~~~~-~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~ 195 (472)
++|.++. ..+..+.++++|++|++++|...+.. +..+..+++|++|++++|.+++..+..+..+++|++|++++|.+
T Consensus 106 s~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~- 184 (549)
T 2z81_A 106 MGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSES- 184 (549)
T ss_dssp TTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSBS-
T ss_pred CCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCceEecccCcc-
Confidence 9999875 34567899999999999999843344 46788999999999999999988888999999999999999876
Q ss_pred cccccccccChhhhcCCCCccEEEcccccccccC--C-ccCcCCCCCCEEecCCCcccccccc----cccccCCCCeEEc
Q 040195 196 YVSSFSGSLPFDILVNLPNLKKLCIAENNFVGSI--P-DSLSNASNLELLELAGNQFEGKVSI----DFSSLKNLAVLNL 268 (472)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~--~-~~l~~~~~L~~L~l~~~~~~~~~~~----~l~~l~~L~~L~l 268 (472)
..++...+..+++|+.|++++|.+++.. + .....+++|+.|++++|.+++.... .+..+++|+.+++
T Consensus 185 ------~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l 258 (549)
T 2z81_A 185 ------AFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEF 258 (549)
T ss_dssp ------TTHHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEE
T ss_pred ------cccchhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccccchhHHHHHHHHhhhhcccccccc
Confidence 3334444567899999999999887632 1 2234567888888888776543222 2344556666666
Q ss_pred CCCcCCCCCCCC------cchh--------------------------hh--------hcccCCCcCCchhhhccccccE
Q 040195 269 ERNNLGIGTAND------LGFV--------------------------TF--------LTNCSSLKLPHSIANLSSTMTH 308 (472)
Q Consensus 269 ~~~~~~~~~~~~------~~~~--------------------------~~--------~~~~~~l~~~~~~~~~~~~l~~ 308 (472)
++|.+...+... .... .. +.+..-..+|..+....++++.
T Consensus 259 ~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~~ip~~~~~~l~~L~~ 338 (549)
T 2z81_A 259 DDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEF 338 (549)
T ss_dssp ESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCCCCCCHHHHHHCTTCCE
T ss_pred ccccccccccccccchhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEeccCccccCCHHHHhcCccccE
Confidence 655543211000 0000 00 0011111234444333456777
Q ss_pred EEeecccccCccc---ccccCccCcceEeccccccccCcc--hhhcCCCCCcEEEccCCcCccccccchhcccccCeeec
Q 040195 309 FYIGGNQILGIIH---FGIRNLVNLIALGMQSNQLHGTIP--DVIGELKNLQILSLFGNFLHGSIPSSLGNLTKLANLEL 383 (472)
Q Consensus 309 l~l~~~~~~~~~~---~~l~~~~~L~~L~l~~~~i~~~~~--~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l 383 (472)
|++++|.+....+ ..+..+++|++|++++|.+.+..+ ..+..+++|++|++++|+++ .+|..+..+++|++|++
T Consensus 339 L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~~L~~L~L 417 (549)
T 2z81_A 339 LDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFH-PMPDSCQWPEKMRFLNL 417 (549)
T ss_dssp EECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCC-CCCSCCCCCTTCCEEEC
T ss_pred EEccCCccccccccchhhhhccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCCCCc-cCChhhcccccccEEEC
Confidence 7777777665432 235566777777777776664322 34566677777777777666 45555666666666666
Q ss_pred cCCcccccCCcC------------------ccCCCCCceEeecCCcccccCChhhhhhcccceEEEcCCCcccccccccc
Q 040195 384 SSNSLQGNIPLS------------------VGNCQNLIGFDASHITLTGALPQQLLSITTLSLYLDLSHNLLNGSLLLQV 445 (472)
Q Consensus 384 ~~~~~~~~~~~~------------------~~~~~~L~~L~ls~~~~~~~~~~~l~~~~~l~~~L~ls~n~l~~~~~~~l 445 (472)
++|.++ .++.. ...+++|++|++++|+++ .+|. ...+++++ .|++++|++++..+..+
T Consensus 418 s~N~l~-~l~~~~~~~L~~L~Ls~N~l~~~~~~l~~L~~L~Ls~N~l~-~ip~-~~~l~~L~-~L~Ls~N~l~~~~~~~~ 493 (549)
T 2z81_A 418 SSTGIR-VVKTCIPQTLEVLDVSNNNLDSFSLFLPRLQELYISRNKLK-TLPD-ASLFPVLL-VMKISRNQLKSVPDGIF 493 (549)
T ss_dssp TTSCCS-CCCTTSCTTCSEEECCSSCCSCCCCCCTTCCEEECCSSCCS-SCCC-GGGCTTCC-EEECCSSCCCCCCTTGG
T ss_pred CCCCcc-cccchhcCCceEEECCCCChhhhcccCChhcEEECCCCccC-cCCC-cccCccCC-EEecCCCccCCcCHHHH
Confidence 666655 22211 124566666777777666 4554 34566666 77777777776666666
Q ss_pred cCCCCCceEeccCCeeccccC
Q 040195 446 GNLKNLILLDISGNQFSGVIP 466 (472)
Q Consensus 446 ~~~~~L~~L~L~~n~~~~~~p 466 (472)
..+++|+.|++++|+++...|
T Consensus 494 ~~l~~L~~L~l~~N~~~~~~~ 514 (549)
T 2z81_A 494 DRLTSLQKIWLHTNPWDCSCP 514 (549)
T ss_dssp GGCTTCCEEECCSSCBCCCHH
T ss_pred hcCcccCEEEecCCCccCCCc
Confidence 677777777777777654433
No 13
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=100.00 E-value=2.4e-41 Score=342.43 Aligned_cols=392 Identities=19% Similarity=0.180 Sum_probs=313.2
Q ss_pred CCCCCceEEEECCCCccCcccCccccCCCCccEEeccCCcCccCcchhhhcCCCCCEEEccCcccCCCCCcccCCCCCCc
Q 040195 34 GHRHQRVTELDLSNQRIGGVLSPYVGNLSFLRYINLSDNGFHGEIPQEIGNLYRLEKLELSNNSFSGTIPTNLSRCSELT 113 (472)
Q Consensus 34 ~~~~~~l~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~ 113 (472)
...++++++|++++|.+.+..+..|.++++|++|++++|.+....+++|.++++|++|++++|.+....+..++++++|+
T Consensus 48 ~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~ 127 (570)
T 2z63_A 48 FFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLK 127 (570)
T ss_dssp TTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCSCTTCTTCC
T ss_pred hhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhhhcCccccccccccccccccCCCcccccccccc
Confidence 45678999999999999988888899999999999999999877778999999999999999998865555789999999
Q ss_pred EEEcccCcCcc-cCCccccCCCCCcEEEccccCCCCCCCccccCCCCc----cEEEecCCccccc---------------
Q 040195 114 HLRVANNKLEG-QIPKEIGSLLKLQTLALYYNNLTGQLPDFVGNLSAL----QVIYIRGNSLGGK--------------- 173 (472)
Q Consensus 114 ~L~l~~~~~~~-~~~~~l~~l~~L~~L~l~~~~i~~~~~~~l~~~~~L----~~L~l~~~~~~~~--------------- 173 (472)
+|++++|.+.. ..|..+.++++|++|++++|.+.+..+..+..+++| +.+++++|.+++.
T Consensus 128 ~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~~~~~L~l~~n~l~~~~~~~~~~~~L~~L~l 207 (570)
T 2z63_A 128 ELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTL 207 (570)
T ss_dssp EEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGHHHHTCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEE
T ss_pred EEecCCCccceecChhhhcccCCCCEEeCcCCccceecHHHccchhccchhhhhcccCCCCceecCHHHhccCcceeEec
Confidence 99999999875 368889999999999999998876555656555555 5566665544322
Q ss_pred ------------------------------------------------------------------cccccccCCCccEE
Q 040195 174 ------------------------------------------------------------------IPTTLGLLRNLVYL 187 (472)
Q Consensus 174 ------------------------------------------------------------------~~~~l~~~~~L~~L 187 (472)
.+..+..+++|++|
T Consensus 208 ~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L 287 (570)
T 2z63_A 208 RNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSF 287 (570)
T ss_dssp ESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGGSEEEEEEEEETTEEESCSTTTTGGGTTCSEE
T ss_pred ccccccccchhhhhcCccccceeeeccccccCchhhhhcchhhhccccccchhhhhhhcchhhhhhchhhhcCcCcccEE
Confidence 22334556778888
Q ss_pred EccCCccccccccccccChhhhcCCCCccEEEcccccccccCCccCcCCCCCCEEecCCCcccccccccccccCCCCeEE
Q 040195 188 NVNENQFWYVSSFSGSLPFDILVNLPNLKKLCIAENNFVGSIPDSLSNASNLELLELAGNQFEGKVSIDFSSLKNLAVLN 267 (472)
Q Consensus 188 ~l~~~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~ 267 (472)
++++|.+..+ +. .+..+ +|++|++++|.+. .+|. ..+++|++|++++|.+....+. ..+++|++|+
T Consensus 288 ~l~~~~l~~l-------~~-~~~~~-~L~~L~l~~n~~~-~l~~--~~l~~L~~L~l~~n~~~~~~~~--~~~~~L~~L~ 353 (570)
T 2z63_A 288 SLVSVTIERV-------KD-FSYNF-GWQHLELVNCKFG-QFPT--LKLKSLKRLTFTSNKGGNAFSE--VDLPSLEFLD 353 (570)
T ss_dssp EEESCEECSC-------CB-CCSCC-CCSEEEEESCBCS-SCCB--CBCSSCCEEEEESCBSCCBCCC--CBCTTCCEEE
T ss_pred EecCccchhh-------hh-hhccC-CccEEeeccCccc-ccCc--ccccccCEEeCcCCcccccccc--ccCCCCCEEe
Confidence 8888876433 22 23355 9999999999988 4443 4789999999999988654443 7889999999
Q ss_pred cCCCcCCCCCCCCcchhhhhcccCCCcCC--------chhhhccccccEEEeecccccCccc-ccccCccCcceEecccc
Q 040195 268 LERNNLGIGTANDLGFVTFLTNCSSLKLP--------HSIANLSSTMTHFYIGGNQILGIIH-FGIRNLVNLIALGMQSN 338 (472)
Q Consensus 268 l~~~~~~~~~~~~~~~~~~~~~~~~l~~~--------~~~~~~~~~l~~l~l~~~~~~~~~~-~~l~~~~~L~~L~l~~~ 338 (472)
+++|.+...+.. ........+++.+.+. .. ....++++.|++++|.+....+ ..+..+++|++|++++|
T Consensus 354 l~~n~l~~~~~~-~~~~~~~~~L~~L~l~~n~l~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n 431 (570)
T 2z63_A 354 LSRNGLSFKGCC-SQSDFGTTSLKYLDLSFNGVITMSSN-FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHT 431 (570)
T ss_dssp CCSSCCBEEEEE-EHHHHTCSCCCEEECCSCSEEEEEEE-EETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTS
T ss_pred CcCCccCccccc-cccccccCccCEEECCCCcccccccc-ccccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCC
Confidence 999987632100 0112222333333322 22 2234589999999999987655 57889999999999999
Q ss_pred ccccCcchhhcCCCCCcEEEccCCcCc-cccccchhcccccCeeeccCCcccccCCcCccCCCCCceEeecCCcccccCC
Q 040195 339 QLHGTIPDVIGELKNLQILSLFGNFLH-GSIPSSLGNLTKLANLELSSNSLQGNIPLSVGNCQNLIGFDASHITLTGALP 417 (472)
Q Consensus 339 ~i~~~~~~~~~~~~~L~~L~L~~n~l~-~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ls~~~~~~~~~ 417 (472)
.+.+..+..+..+++|++|++++|.+. +..|..+..+++|++|++++|++++..+..+..+++|++|++++|.+++..+
T Consensus 432 ~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 511 (570)
T 2z63_A 432 HTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPD 511 (570)
T ss_dssp CCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCT
T ss_pred cccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCCCcCCCCCH
Confidence 999888889999999999999999987 5688899999999999999999998889999999999999999999997666
Q ss_pred hhhhhhcccceEEEcCCCccccccc
Q 040195 418 QQLLSITTLSLYLDLSHNLLNGSLL 442 (472)
Q Consensus 418 ~~l~~~~~l~~~L~ls~n~l~~~~~ 442 (472)
..+..+++++ .|++++|++.+..+
T Consensus 512 ~~~~~l~~L~-~L~l~~N~~~~~~~ 535 (570)
T 2z63_A 512 GIFDRLTSLQ-KIWLHTNPWDCSCP 535 (570)
T ss_dssp TTTTTCTTCC-EEECCSSCBCCCTT
T ss_pred HHhhcccCCc-EEEecCCcccCCCc
Confidence 7788999999 99999999986544
No 14
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=3e-41 Score=355.28 Aligned_cols=421 Identities=22% Similarity=0.173 Sum_probs=275.9
Q ss_pred ccccceeeCCCCCceEEEECCCCccCcccCccccCCCCccEEeccCCcCc-cCcchhhhcCCCCCEEEccCcccCCCCCc
Q 040195 26 CQWMGVTCGHRHQRVTELDLSNQRIGGVLSPYVGNLSFLRYINLSDNGFH-GEIPQEIGNLYRLEKLELSNNSFSGTIPT 104 (472)
Q Consensus 26 ~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~-~~~~~~~~~l~~L~~L~L~~~~~~~~~~~ 104 (472)
+.|..+.. -.+++++|++++|.+....+..|.++++|++|++++|... ...+++|.++++|++|++++|.+.+..|.
T Consensus 14 ~~L~~vP~--lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~ 91 (844)
T 3j0a_A 14 CNLTQVPQ--VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPD 91 (844)
T ss_dssp CCSSCCCS--SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTT
T ss_pred CCCCCCCC--CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHh
Confidence 45666665 4588999999999998888889999999999999998544 34478899999999999999999877788
Q ss_pred ccCCCCCCcEEEcccCcCcccCCcc--ccCCCCCcEEEccccCCCCCCC-ccccCCCCccEEEecCCccccccccccccC
Q 040195 105 NLSRCSELTHLRVANNKLEGQIPKE--IGSLLKLQTLALYYNNLTGQLP-DFVGNLSALQVIYIRGNSLGGKIPTTLGLL 181 (472)
Q Consensus 105 ~l~~l~~L~~L~l~~~~~~~~~~~~--l~~l~~L~~L~l~~~~i~~~~~-~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~ 181 (472)
.|.++++|++|++++|.+.+..+.. +.++++|++|++++|.+.+..+ ..+..+++|++|++++|.+++..+..+..+
T Consensus 92 ~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l 171 (844)
T 3j0a_A 92 AFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPL 171 (844)
T ss_dssp SSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHH
T ss_pred HccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccc
Confidence 9999999999999999988655544 8889999999999999876544 578899999999999998876666666554
Q ss_pred --CCccEEEccCCcccccccc------------------------ccccC------------------------------
Q 040195 182 --RNLVYLNVNENQFWYVSSF------------------------SGSLP------------------------------ 205 (472)
Q Consensus 182 --~~L~~L~l~~~~l~~~~~~------------------------~~~~~------------------------------ 205 (472)
++|+.|++++|.+...... .+..+
T Consensus 172 ~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~ 251 (844)
T 3j0a_A 172 QGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHN 251 (844)
T ss_dssp HHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSS
T ss_pred cCCccceEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccc
Confidence 5666666665554321100 00000
Q ss_pred -----hhhhcC--CCCccEEEcccccccccCCccCcCCCCCCEEecCCCcccccccccccccCCCCeEEcCCCcCCCCCC
Q 040195 206 -----FDILVN--LPNLKKLCIAENNFVGSIPDSLSNASNLELLELAGNQFEGKVSIDFSSLKNLAVLNLERNNLGIGTA 278 (472)
Q Consensus 206 -----~~~~~~--~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~ 278 (472)
...+.. .++|+.|++++|.+.+..+..|..+++|+.|++++|.+....+..|..+++|++|++++|.+.....
T Consensus 252 l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~ 331 (844)
T 3j0a_A 252 IKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYS 331 (844)
T ss_dssp STTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCS
T ss_pred cCCCChhhhhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCH
Confidence 000111 2456666666666665555666666666666666666665555566666666666666666542111
Q ss_pred CCcchhhhhcccCCCcCCchhhhccccccEEEeecccccCcccccccCccCcceEeccccccccCcc-------------
Q 040195 279 NDLGFVTFLTNCSSLKLPHSIANLSSTMTHFYIGGNQILGIIHFGIRNLVNLIALGMQSNQLHGTIP------------- 345 (472)
Q Consensus 279 ~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~------------- 345 (472)
.. ....++++.|++++|.+....+..|..+++|+.|++++|.+.....
T Consensus 332 ------------------~~-~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~L~~L~l~~N~ 392 (844)
T 3j0a_A 332 ------------------SN-FYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTIHFIPSIPDIFLSGNK 392 (844)
T ss_dssp ------------------CS-CSSCTTCCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCCSCCCSSCCSCSEEEEESCC
T ss_pred ------------------HH-hcCCCCCCEEECCCCCCCccChhhhcCCCCCCEEECCCCCCCcccCCCCcchhccCCCC
Confidence 11 1122378888888888877777777788888888888877653210
Q ss_pred ---------------------------hhhcCCCCCcEEEccCCcCcccccc-chhcccccCeeeccCCccc-----ccC
Q 040195 346 ---------------------------DVIGELKNLQILSLFGNFLHGSIPS-SLGNLTKLANLELSSNSLQ-----GNI 392 (472)
Q Consensus 346 ---------------------------~~~~~~~~L~~L~L~~n~l~~~~~~-~l~~~~~L~~L~l~~~~~~-----~~~ 392 (472)
..+..+++|++|++++|++.+..+. .+..+++|+.|++++|.++ +..
T Consensus 393 l~~l~~~~~~l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~ 472 (844)
T 3j0a_A 393 LVTLPKINLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELC 472 (844)
T ss_dssp CCCCCCCCTTCCEEECCSCCCCSSTTHHHHTTCTTCCEEEEESCCCCCCCSSSSSCSCTTCCBCEEESCCCSSSCCSCCC
T ss_pred cccccccccccceeecccCccccCchhhhhhcCCccceeeCCCCcccccccccccccCCccccccCCCCccccccccccc
Confidence 0112344444555555444422111 2233445555555555544 122
Q ss_pred CcCccCCCCCceEeecCCcccccCChhhhhhcccceEEEcCCCcccccccccccCCCCCceEeccCCeeccccCCccc
Q 040195 393 PLSVGNCQNLIGFDASHITLTGALPQQLLSITTLSLYLDLSHNLLNGSLLLQVGNLKNLILLDISGNQFSGVIPVTLS 470 (472)
Q Consensus 393 ~~~~~~~~~L~~L~ls~~~~~~~~~~~l~~~~~l~~~L~ls~n~l~~~~~~~l~~~~~L~~L~L~~n~~~~~~p~~~~ 470 (472)
+..+..+++|+.|++++|.+++..+..+..+++|+ .|++++|++++..+..+. ++|+.|+|++|.+++..|..|.
T Consensus 473 ~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~-~L~Ls~N~l~~l~~~~~~--~~L~~L~Ls~N~l~~~~~~~~~ 547 (844)
T 3j0a_A 473 WDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALR-GLSLNSNRLTVLSHNDLP--ANLEILDISRNQLLAPNPDVFV 547 (844)
T ss_dssp SSCSSCBCCEECCCCCHHHHTTCCTTSSSSCCSCS-EEEEESCCCSSCCCCCCC--SCCCEEEEEEECCCCCCSCCCS
T ss_pred hhhhcCcccccEEECCCCcccccChhHccchhhhh-eeECCCCCCCccChhhhh--ccccEEECCCCcCCCCChhHhC
Confidence 23455566677777777766655555566667777 777777777655555544 6677777777777766666654
No 15
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=8.3e-41 Score=340.70 Aligned_cols=375 Identities=21% Similarity=0.319 Sum_probs=323.1
Q ss_pred CCccEEeccCCcCccCcchhhhcCCCCCEEEccCccc-------------------------------------------
Q 040195 62 SFLRYINLSDNGFHGEIPQEIGNLYRLEKLELSNNSF------------------------------------------- 98 (472)
Q Consensus 62 ~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~~------------------------------------------- 98 (472)
.+++.|+|+++.+.+.+|.++.++++|++|++++|.+
T Consensus 81 ~~V~~L~L~~~~l~g~lp~~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~~~~l~l~l~~~~l~~~~~~~~~~ 160 (636)
T 4eco_A 81 GRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSD 160 (636)
T ss_dssp CCEEEEECTTSCCEEEECGGGGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHHHHHHHTHHHHHHTCCCGGGGSCH
T ss_pred CCEEEEEecCcccCCcCChHHhcCccceEEECcCCccccCCccccccccccCchHHHHHHHHhhHHHhhhccCchhhHHH
Confidence 5789999999999988999999999999999998843
Q ss_pred -----------------------------------CCCCCcccCCCCCCcEEEcccCcCccc-----------------C
Q 040195 99 -----------------------------------SGTIPTNLSRCSELTHLRVANNKLEGQ-----------------I 126 (472)
Q Consensus 99 -----------------------------------~~~~~~~l~~l~~L~~L~l~~~~~~~~-----------------~ 126 (472)
++ +|..++++++|++|++++|.+++. .
T Consensus 161 ~~~~l~~~~l~~~~~~~~~~~~l~~l~l~~~~n~l~~-ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~i 239 (636)
T 4eco_A 161 LIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYK 239 (636)
T ss_dssp HHHHHHHHCTTSCCCCCCCCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHT
T ss_pred HHHHHhhcCccccccccccccchhhhhhccccCCCcc-CCHHHhcccCCCEEECcCCccccccccccccccccchhcccC
Confidence 22 567788999999999999999864 8
Q ss_pred Ccccc--CCCCCcEEEccccCCCCCCCccccCCCCccEEEecCCc-ccc-ccccccccC------CCccEEEccCCcccc
Q 040195 127 PKEIG--SLLKLQTLALYYNNLTGQLPDFVGNLSALQVIYIRGNS-LGG-KIPTTLGLL------RNLVYLNVNENQFWY 196 (472)
Q Consensus 127 ~~~l~--~l~~L~~L~l~~~~i~~~~~~~l~~~~~L~~L~l~~~~-~~~-~~~~~l~~~------~~L~~L~l~~~~l~~ 196 (472)
|..+. ++++|++|++++|.+.+..|..+..+++|++|++++|. +++ ..|..++.+ ++|++|++++|.+.
T Consensus 240 p~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~- 318 (636)
T 4eco_A 240 TEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK- 318 (636)
T ss_dssp TSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-
T ss_pred chhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC-
Confidence 88888 99999999999999988999999999999999999998 887 778777776 99999999999973
Q ss_pred ccccccccCh-hhhcCCCCccEEEcccccccccCCccCcCCCCCCEEecCCCcccccccccccccCC-CCeEEcCCCcCC
Q 040195 197 VSSFSGSLPF-DILVNLPNLKKLCIAENNFVGSIPDSLSNASNLELLELAGNQFEGKVSIDFSSLKN-LAVLNLERNNLG 274 (472)
Q Consensus 197 ~~~~~~~~~~-~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~-L~~L~l~~~~~~ 274 (472)
.+|. +.+..+++|+.|++++|.+.+.+| .+..+++|++|++++|.++ ..+..+..+++ |++|++++|.+.
T Consensus 319 ------~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~ 390 (636)
T 4eco_A 319 ------TFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKLK 390 (636)
T ss_dssp ------SCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEESEEECCSSEEE-ECCTTSEEECTTCCEEECCSSCCS
T ss_pred ------ccCchhhhccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEECCCCccc-cccHhhhhhcccCcEEEccCCcCc
Confidence 3443 357789999999999999997777 8999999999999999998 66777999999 999999999986
Q ss_pred CCCCCCcchhhhhcccCCCcCCchhhhc-cccccEEEeecccccCccccccc-------CccCcceEeccccccccCcch
Q 040195 275 IGTANDLGFVTFLTNCSSLKLPHSIANL-SSTMTHFYIGGNQILGIIHFGIR-------NLVNLIALGMQSNQLHGTIPD 346 (472)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~l~~l~l~~~~~~~~~~~~l~-------~~~~L~~L~l~~~~i~~~~~~ 346 (472)
. +|..+... .++++.|++++|.+....+..+. .+++|++|++++|.+....+.
T Consensus 391 ~-------------------lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~ 451 (636)
T 4eco_A 391 Y-------------------IPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKE 451 (636)
T ss_dssp S-------------------CCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCTH
T ss_pred c-------------------cchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccCcCCHH
Confidence 2 22222211 13799999999999988777777 788999999999999955555
Q ss_pred hhcCCCCCcEEEccCCcCccccccc-hhc-------ccccCeeeccCCcccccCCcCcc--CCCCCceEeecCCcccccC
Q 040195 347 VIGELKNLQILSLFGNFLHGSIPSS-LGN-------LTKLANLELSSNSLQGNIPLSVG--NCQNLIGFDASHITLTGAL 416 (472)
Q Consensus 347 ~~~~~~~L~~L~L~~n~l~~~~~~~-l~~-------~~~L~~L~l~~~~~~~~~~~~~~--~~~~L~~L~ls~~~~~~~~ 416 (472)
.+..+++|++|++++|.++ .++.. +.. +++|++|++++|+++ .+|..+. .+++|+.|++++|++++ +
T Consensus 452 ~~~~l~~L~~L~Ls~N~l~-~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~-i 528 (636)
T 4eco_A 452 LFSTGSPLSSINLMGNMLT-EIPKNSLKDENENFKNTYLLTSIDLRFNKLT-KLSDDFRATTLPYLVGIDLSYNSFSK-F 528 (636)
T ss_dssp HHHTTCCCSEEECCSSCCS-BCCSSSSEETTEECTTGGGCCEEECCSSCCC-BCCGGGSTTTCTTCCEEECCSSCCSS-C
T ss_pred HHccCCCCCEEECCCCCCC-CcCHHHhccccccccccCCccEEECcCCcCC-ccChhhhhccCCCcCEEECCCCCCCC-c
Confidence 6777999999999999998 44443 332 239999999999999 7888776 99999999999999995 9
Q ss_pred ChhhhhhcccceEEEc------CCCcccccccccccCCCCCceEeccCCeeccccCCccc
Q 040195 417 PQQLLSITTLSLYLDL------SHNLLNGSLLLQVGNLKNLILLDISGNQFSGVIPVTLS 470 (472)
Q Consensus 417 ~~~l~~~~~l~~~L~l------s~n~l~~~~~~~l~~~~~L~~L~L~~n~~~~~~p~~~~ 470 (472)
|..+..+++|+ .|++ ++|++.+.+|..+.++++|+.|+|++|.+ +.+|..+.
T Consensus 529 p~~~~~l~~L~-~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l-~~ip~~~~ 586 (636)
T 4eco_A 529 PTQPLNSSTLK-GFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDI-RKVNEKIT 586 (636)
T ss_dssp CCGGGGCSSCC-EEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCC
T ss_pred ChhhhcCCCCC-EEECCCCcccccCcccccChHHHhcCCCCCEEECCCCcC-CccCHhHh
Confidence 99999999999 9999 56788889999999999999999999999 68887653
No 16
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=100.00 E-value=4.4e-39 Score=316.52 Aligned_cols=364 Identities=18% Similarity=0.179 Sum_probs=189.3
Q ss_pred CCccEEeccCCcCccCcchhhhcCCCCCEEEccCcccCC-CCCcccCCCCCCcEEEcccCcCcccCCccccCCCCCcEEE
Q 040195 62 SFLRYINLSDNGFHGEIPQEIGNLYRLEKLELSNNSFSG-TIPTNLSRCSELTHLRVANNKLEGQIPKEIGSLLKLQTLA 140 (472)
Q Consensus 62 ~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~-~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~ 140 (472)
++|++|++++|.+....+..+.++++|++|++++|.+.. ..+..|..+++|++|++++|.++...+..+.++++|++|+
T Consensus 30 ~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 109 (455)
T 3v47_A 30 AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLT 109 (455)
T ss_dssp TTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEEE
T ss_pred CccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhccCcccCCEEe
Confidence 455555555555554445555555555555555555432 2234455555555555555555544455555555555555
Q ss_pred ccccCCCCCCCcc--ccCCCCccEEEecCCccccccccc-cccCCCccEEEccCCccccccccccccChhhhcC--CCCc
Q 040195 141 LYYNNLTGQLPDF--VGNLSALQVIYIRGNSLGGKIPTT-LGLLRNLVYLNVNENQFWYVSSFSGSLPFDILVN--LPNL 215 (472)
Q Consensus 141 l~~~~i~~~~~~~--l~~~~~L~~L~l~~~~~~~~~~~~-l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~--~~~L 215 (472)
+++|.+.+..+.. +..+++|++|++++|.+++..+.. +..+++|++|++++|.+.... ...+.. .++|
T Consensus 110 L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~-------~~~l~~l~~~~L 182 (455)
T 3v47_A 110 LTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSIC-------EEDLLNFQGKHF 182 (455)
T ss_dssp CTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCC-------TTTSGGGTTCEE
T ss_pred CCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccC-------hhhhhccccccc
Confidence 5555554322222 455555555555555555443433 455555555555555543221 111111 1455
Q ss_pred cEEEcccccccccCCcc--------CcCCCCCCEEecCCCccccccccccccc---CCCCeEEcCCCcCCCCCCCCcchh
Q 040195 216 KKLCIAENNFVGSIPDS--------LSNASNLELLELAGNQFEGKVSIDFSSL---KNLAVLNLERNNLGIGTANDLGFV 284 (472)
Q Consensus 216 ~~L~l~~~~l~~~~~~~--------l~~~~~L~~L~l~~~~~~~~~~~~l~~l---~~L~~L~l~~~~~~~~~~~~~~~~ 284 (472)
+.|++++|.+....+.. +..+++|++|++++|.+.+..+..+... ++|+.|++++|...........
T Consensus 183 ~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~-- 260 (455)
T 3v47_A 183 TLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTN-- 260 (455)
T ss_dssp EEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCS--
T ss_pred cccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccccchhh--
Confidence 66666666555433222 2355678888888887776555555443 6778888887765432111100
Q ss_pred hhhcccCCCcCCchhhhccccccEEEeecccccCccccccc--CccCcceEeccccccccCcchhhcCCCCCcEEEccCC
Q 040195 285 TFLTNCSSLKLPHSIANLSSTMTHFYIGGNQILGIIHFGIR--NLVNLIALGMQSNQLHGTIPDVIGELKNLQILSLFGN 362 (472)
Q Consensus 285 ~~~~~~~~l~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~l~--~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~L~~n 362 (472)
+.......+. ..++|+.|++++|.+.+..+..+..+++|++|++++|
T Consensus 261 -------------------------------~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n 309 (455)
T 3v47_A 261 -------------------------------FKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQN 309 (455)
T ss_dssp -------------------------------SCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTS
T ss_pred -------------------------------hccCcccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCC
Confidence 0000000111 1244555555555555555555555555555555555
Q ss_pred cCccccccchhcccccCeeeccCCcccccCCcCccCCCCCceEeecCCcccccCChhhhhhcccceEEEcCCCccccccc
Q 040195 363 FLHGSIPSSLGNLTKLANLELSSNSLQGNIPLSVGNCQNLIGFDASHITLTGALPQQLLSITTLSLYLDLSHNLLNGSLL 442 (472)
Q Consensus 363 ~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ls~~~~~~~~~~~l~~~~~l~~~L~ls~n~l~~~~~ 442 (472)
.+.+..+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+.+..|..+..+++|+ .|++++|++++..+
T Consensus 310 ~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~-~L~L~~N~l~~~~~ 388 (455)
T 3v47_A 310 EINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLK-ELALDTNQLKSVPD 388 (455)
T ss_dssp CCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCC-EEECCSSCCSCCCT
T ss_pred cccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhcccccccc-EEECCCCccccCCH
Confidence 55544455555555555555555555544445555555555555555555544455555555555 55555555555444
Q ss_pred ccccCCCCCceEeccCCeeccccC
Q 040195 443 LQVGNLKNLILLDISGNQFSGVIP 466 (472)
Q Consensus 443 ~~l~~~~~L~~L~L~~n~~~~~~p 466 (472)
..+..+++|+.|++++|+++...|
T Consensus 389 ~~~~~l~~L~~L~l~~N~l~~~~~ 412 (455)
T 3v47_A 389 GIFDRLTSLQKIWLHTNPWDCSCP 412 (455)
T ss_dssp TTTTTCTTCCEEECCSSCBCCCTT
T ss_pred hHhccCCcccEEEccCCCcccCCC
Confidence 445555566666666665555444
No 17
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=100.00 E-value=1.3e-38 Score=318.54 Aligned_cols=393 Identities=21% Similarity=0.204 Sum_probs=276.8
Q ss_pred CceEEEECCCCccCcccCccccCCCCccEEeccCCcCccCcchhhhcCCCCCEEEccCcccCCCCCcccCCCCCCcEEEc
Q 040195 38 QRVTELDLSNQRIGGVLSPYVGNLSFLRYINLSDNGFHGEIPQEIGNLYRLEKLELSNNSFSGTIPTNLSRCSELTHLRV 117 (472)
Q Consensus 38 ~~l~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l 117 (472)
+++++|++++|.+.+..+..|.++++|++|++++|.+.+..|++|.++++|++|++++|.+. .+|.. .+++|++|++
T Consensus 21 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~--~l~~L~~L~L 97 (520)
T 2z7x_B 21 QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLV-KISCH--PTVNLKHLDL 97 (520)
T ss_dssp TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCCC-EEECC--CCCCCSEEEC
T ss_pred ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCcee-ecCcc--ccCCccEEec
Confidence 67888888888888777777888888888888888888777888888888888888888887 44444 7888888888
Q ss_pred ccCcCcc-cCCccccCCCCCcEEEccccCCCCCCCccccCCCCc--cEEEecCCcc--cccccccccc------------
Q 040195 118 ANNKLEG-QIPKEIGSLLKLQTLALYYNNLTGQLPDFVGNLSAL--QVIYIRGNSL--GGKIPTTLGL------------ 180 (472)
Q Consensus 118 ~~~~~~~-~~~~~l~~l~~L~~L~l~~~~i~~~~~~~l~~~~~L--~~L~l~~~~~--~~~~~~~l~~------------ 180 (472)
++|.++. ..|..++++++|++|++++|.+.+ ..+..+++| ++|++++|.+ .+..+..+..
T Consensus 98 ~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~---~~~~~l~~L~L~~L~l~~n~l~~~~~~~~~l~~l~~~~l~l~l~~ 174 (520)
T 2z7x_B 98 SFNAFDALPICKEFGNMSQLKFLGLSTTHLEK---SSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPT 174 (520)
T ss_dssp CSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG---GGGGGGTTSCEEEEEEEECTTTTSSCCTTTTTTCCEEEEEEECCS
T ss_pred cCCccccccchhhhccCCcceEEEecCcccch---hhccccccceeeEEEeecccccccccccccccccccceEEEEecc
Confidence 8888875 356788888888888888888764 345666777 8888888877 5555554443
Q ss_pred --------------CCCccEEEccCCccc-cccccccccChhhhcCCCCcc---------------------------EE
Q 040195 181 --------------LRNLVYLNVNENQFW-YVSSFSGSLPFDILVNLPNLK---------------------------KL 218 (472)
Q Consensus 181 --------------~~~L~~L~l~~~~l~-~~~~~~~~~~~~~~~~~~~L~---------------------------~L 218 (472)
+++|+.+++++|.-. ......+.++ .+..+++|+ +|
T Consensus 175 n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~--~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~L 252 (520)
T 2z7x_B 175 NKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILA--KLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYF 252 (520)
T ss_dssp SSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHH--GGGGCTTCCEEEEEEEEEEHHHHHHHHHHHHTSSCSEE
T ss_pred Ccchhhhhhhhhhcccceeeccccccccccccceeecchh--hhccccchhhccccccccCHHHHHHHHHHhhhCcccEE
Confidence 344445555444200 0000001111 123344444 44
Q ss_pred EcccccccccCCccC-----cCCCCCCEEecCCCccccccccccccc---CCCCeEEcCCCcCCCCCCCCcchhhhhccc
Q 040195 219 CIAENNFVGSIPDSL-----SNASNLELLELAGNQFEGKVSIDFSSL---KNLAVLNLERNNLGIGTANDLGFVTFLTNC 290 (472)
Q Consensus 219 ~l~~~~l~~~~~~~l-----~~~~~L~~L~l~~~~~~~~~~~~l~~l---~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~ 290 (472)
++++|.+.+.+|..+ ..+++|+.+++++|.+ ......+..+ .+|+.|++++|.+....
T Consensus 253 ~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~-~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~------------- 318 (520)
T 2z7x_B 253 SISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF-GFPQSYIYEIFSNMNIKNFTVSGTRMVHML------------- 318 (520)
T ss_dssp EEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCC-CSCTHHHHHHHHTCCCSEEEEESSCCCCCC-------------
T ss_pred EeecccccCccccchhhcccccCceeEeccccccce-ecchhhhhcccccCceeEEEcCCCcccccc-------------
Confidence 444444443333333 4444444444444443 1111122222 34555555554443111
Q ss_pred CCCcCCchhhhccccccEEEeecccccCcccccccCccCcceEecccccccc--CcchhhcCCCCCcEEEccCCcCcccc
Q 040195 291 SSLKLPHSIANLSSTMTHFYIGGNQILGIIHFGIRNLVNLIALGMQSNQLHG--TIPDVIGELKNLQILSLFGNFLHGSI 368 (472)
Q Consensus 291 ~~l~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~--~~~~~~~~~~~L~~L~L~~n~l~~~~ 368 (472)
.....++++.|++++|.++...+..+..+++|++|++++|.+.+ ..|..+..+++|++|++++|.+.+.+
T Consensus 319 --------~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l 390 (520)
T 2z7x_B 319 --------CPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDE 390 (520)
T ss_dssp --------CCSSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCG
T ss_pred --------chhhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCccc
Confidence 00233589999999999998778889999999999999999986 45577889999999999999998745
Q ss_pred cc-chhcccccCeeeccCCcccccCCcCccCCCCCceEeecCCcccccCChhhhhhcccceEEEcCCCcccccccccccC
Q 040195 369 PS-SLGNLTKLANLELSSNSLQGNIPLSVGNCQNLIGFDASHITLTGALPQQLLSITTLSLYLDLSHNLLNGSLLLQVGN 447 (472)
Q Consensus 369 ~~-~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ls~~~~~~~~~~~l~~~~~l~~~L~ls~n~l~~~~~~~l~~ 447 (472)
+. .+..+++|++|++++|++++.++..+. ++|+.|++++|.++ .+|..+..+++++ .|++++|+++...+..+..
T Consensus 391 ~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~-~ip~~~~~l~~L~-~L~L~~N~l~~l~~~~~~~ 466 (520)
T 2z7x_B 391 KKGDCSWTKSLLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIK-SIPKQVVKLEALQ-ELNVASNQLKSVPDGIFDR 466 (520)
T ss_dssp GGCSCCCCTTCCEEECCSSCCCGGGGGSCC--TTCCEEECCSSCCC-CCCGGGGGCTTCC-EEECCSSCCCCCCTTTTTT
T ss_pred ccchhccCccCCEEECcCCCCCcchhhhhc--ccCCEEECCCCccc-ccchhhhcCCCCC-EEECCCCcCCccCHHHhcc
Confidence 54 477889999999999999876665543 79999999999999 7898888999999 9999999999544445899
Q ss_pred CCCCceEeccCCeeccc
Q 040195 448 LKNLILLDISGNQFSGV 464 (472)
Q Consensus 448 ~~~L~~L~L~~n~~~~~ 464 (472)
+++|+.|++++|+++..
T Consensus 467 l~~L~~L~l~~N~~~c~ 483 (520)
T 2z7x_B 467 LTSLQKIWLHTNPWDCS 483 (520)
T ss_dssp CTTCCEEECCSSCBCCC
T ss_pred CCcccEEECcCCCCccc
Confidence 99999999999998743
No 18
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=5.7e-39 Score=337.94 Aligned_cols=415 Identities=21% Similarity=0.243 Sum_probs=309.6
Q ss_pred eCCCCCceEEEECCCCccC-cccCccccCCCCccEEeccCCcCccCcchhhhcCCCCCEEEccCcccCCCCCcc--cCCC
Q 040195 33 CGHRHQRVTELDLSNQRIG-GVLSPYVGNLSFLRYINLSDNGFHGEIPQEIGNLYRLEKLELSNNSFSGTIPTN--LSRC 109 (472)
Q Consensus 33 ~~~~~~~l~~L~l~~~~~~-~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~--l~~l 109 (472)
.....+++++|++++|... ...+..|.++++|++|+|++|.+....|++|.++++|++|++++|.+.+..+.. +.++
T Consensus 43 ~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L 122 (844)
T 3j0a_A 43 SFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNL 122 (844)
T ss_dssp SCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSC
T ss_pred HCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCEeeCcCCCCCcccccCcccccc
Confidence 3466789999999999544 444788999999999999999998888999999999999999999988655544 8899
Q ss_pred CCCcEEEcccCcCcccCC-ccccCCCCCcEEEccccCCCCCCCccccCC--CCccEEEecCCccccccccccccC-----
Q 040195 110 SELTHLRVANNKLEGQIP-KEIGSLLKLQTLALYYNNLTGQLPDFVGNL--SALQVIYIRGNSLGGKIPTTLGLL----- 181 (472)
Q Consensus 110 ~~L~~L~l~~~~~~~~~~-~~l~~l~~L~~L~l~~~~i~~~~~~~l~~~--~~L~~L~l~~~~~~~~~~~~l~~~----- 181 (472)
++|++|++++|.+....+ ..+.++++|++|++++|.+.+..+..+..+ ++|+.|++++|.+.+..+..+..+
T Consensus 123 ~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~ 202 (844)
T 3j0a_A 123 KALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFR 202 (844)
T ss_dssp SSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTT
T ss_pred CCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccceEECCCCccccccccchhhcCCccc
Confidence 999999999999875544 578999999999999998887666666554 556666666555544333333322
Q ss_pred ---------------------------------------------------------------CCccEEEccCCcccccc
Q 040195 182 ---------------------------------------------------------------RNLVYLNVNENQFWYVS 198 (472)
Q Consensus 182 ---------------------------------------------------------------~~L~~L~l~~~~l~~~~ 198 (472)
++|+.|++++|.+
T Consensus 203 ~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l---- 278 (844)
T 3j0a_A 203 NMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFV---- 278 (844)
T ss_dssp TCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCC----
T ss_pred cCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCCCChhhhhccccCCccEEECCCCcc----
Confidence 3444455544443
Q ss_pred ccccccChhhhcCCCCccEEEcccccccccCCccCcCCCCCCEEecCCCcccccccccccccCCCCeEEcCCCcCCCCCC
Q 040195 199 SFSGSLPFDILVNLPNLKKLCIAENNFVGSIPDSLSNASNLELLELAGNQFEGKVSIDFSSLKNLAVLNLERNNLGIGTA 278 (472)
Q Consensus 199 ~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~ 278 (472)
..++...+..+++|+.|++++|.+.+..+..|..+++|++|++++|.++...+..+..+++|+.|++++|.+.....
T Consensus 279 ---~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~ 355 (844)
T 3j0a_A 279 ---FSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQD 355 (844)
T ss_dssp ---CEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSCSCSSCTTCCEEECCSCCCCCCCS
T ss_pred ---cccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCHHHhcCCCCCCEEECCCCCCCccCh
Confidence 22334557789999999999999998888889999999999999999987778889999999999999998864332
Q ss_pred CCcchhhhhcccCCCcCCchhhhc---cccccEEEeecccccCccc---------------------ccccCccCcceEe
Q 040195 279 NDLGFVTFLTNCSSLKLPHSIANL---SSTMTHFYIGGNQILGIIH---------------------FGIRNLVNLIALG 334 (472)
Q Consensus 279 ~~~~~~~~~~~~~~l~~~~~~~~~---~~~l~~l~l~~~~~~~~~~---------------------~~l~~~~~L~~L~ 334 (472)
..+. .+.+++.+.+....... .++++.+++++|.++.+.. ..+..+++|+.|+
T Consensus 356 ~~~~---~l~~L~~L~Ls~N~l~~i~~~~~L~~L~l~~N~l~~l~~~~~~l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~ 432 (844)
T 3j0a_A 356 QTFK---FLEKLQTLDLRDNALTTIHFIPSIPDIFLSGNKLVTLPKINLTANLIHLSENRLENLDILYFLLRVPHLQILI 432 (844)
T ss_dssp SCSC---SCCCCCEEEEETCCSCCCSSCCSCSEEEEESCCCCCCCCCCTTCCEEECCSCCCCSSTTHHHHTTCTTCCEEE
T ss_pred hhhc---CCCCCCEEECCCCCCCcccCCCCcchhccCCCCcccccccccccceeecccCccccCchhhhhhcCCccceee
Confidence 2111 11122222221111111 0133334444433332211 1134688999999
Q ss_pred ccccccccCcch-hhcCCCCCcEEEccCCcCc-----cccccchhcccccCeeeccCCcccccCCcCccCCCCCceEeec
Q 040195 335 MQSNQLHGTIPD-VIGELKNLQILSLFGNFLH-----GSIPSSLGNLTKLANLELSSNSLQGNIPLSVGNCQNLIGFDAS 408 (472)
Q Consensus 335 l~~~~i~~~~~~-~~~~~~~L~~L~L~~n~l~-----~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ls 408 (472)
+++|.+.+..+. .+..+++|+.|++++|.+. +..+..+..+++|++|++++|.+++..+..+..+++|+.|+++
T Consensus 433 Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls 512 (844)
T 3j0a_A 433 LNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLN 512 (844)
T ss_dssp EESCCCCCCCSSSSSCSCTTCCBCEEESCCCSSSCCSCCCSSCSSCBCCEECCCCCHHHHTTCCTTSSSSCCSCSEEEEE
T ss_pred CCCCcccccccccccccCCccccccCCCCccccccccccchhhhcCcccccEEECCCCcccccChhHccchhhhheeECC
Confidence 999999865433 4566899999999999986 3345668889999999999999998888889999999999999
Q ss_pred CCcccccCChhhhhhcccceEEEcCCCcccccccccccCCCCCceEeccCCeecc
Q 040195 409 HITLTGALPQQLLSITTLSLYLDLSHNLLNGSLLLQVGNLKNLILLDISGNQFSG 463 (472)
Q Consensus 409 ~~~~~~~~~~~l~~~~~l~~~L~ls~n~l~~~~~~~l~~~~~L~~L~L~~n~~~~ 463 (472)
+|.+++..+..+. ++|+ .|++++|++++..|..| .+|+.|++++|++.-
T Consensus 513 ~N~l~~l~~~~~~--~~L~-~L~Ls~N~l~~~~~~~~---~~L~~l~l~~Np~~C 561 (844)
T 3j0a_A 513 SNRLTVLSHNDLP--ANLE-ILDISRNQLLAPNPDVF---VSLSVLDITHNKFIC 561 (844)
T ss_dssp SCCCSSCCCCCCC--SCCC-EEEEEEECCCCCCSCCC---SSCCEEEEEEECCCC
T ss_pred CCCCCccChhhhh--cccc-EEECCCCcCCCCChhHh---CCcCEEEecCCCccc
Confidence 9999854444443 7888 99999999998888765 489999999999863
No 19
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=8.3e-39 Score=331.36 Aligned_cols=375 Identities=21% Similarity=0.277 Sum_probs=311.9
Q ss_pred CCccEEeccCCcCccCcchhhhcCCCCCEEEc-cCcccCCC---------------------------------------
Q 040195 62 SFLRYINLSDNGFHGEIPQEIGNLYRLEKLEL-SNNSFSGT--------------------------------------- 101 (472)
Q Consensus 62 ~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L-~~~~~~~~--------------------------------------- 101 (472)
.+++.|+|+++.+.+.+|..++++++|++|+| ++|.+.+.
T Consensus 323 ~~V~~L~Ls~~~L~G~ip~~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~ 402 (876)
T 4ecn_A 323 GRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSD 402 (876)
T ss_dssp SCEEEEECTTTCCEEEECGGGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSCH
T ss_pred CCEEEEECccCCCCCcCchHHhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhhH
Confidence 57899999999999899999999999999999 66643221
Q ss_pred -------------------------------------CCcccCCCCCCcEEEcccCcCcc-----------------cCC
Q 040195 102 -------------------------------------IPTNLSRCSELTHLRVANNKLEG-----------------QIP 127 (472)
Q Consensus 102 -------------------------------------~~~~l~~l~~L~~L~l~~~~~~~-----------------~~~ 127 (472)
+|..+.++++|++|++++|.+++ .+|
T Consensus 403 l~~~~l~~~~~~~~i~~~~~l~l~~l~l~~~~N~L~~IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP 482 (876)
T 4ecn_A 403 LLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYEN 482 (876)
T ss_dssp HHHHHHHTCTTSCCCCCCCCCCCCTTTTTCCSCEEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTT
T ss_pred HHHHHhhhCccccccccccccchhhceeccccCcccchhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCC
Confidence 66778899999999999999986 278
Q ss_pred cccc--CCCCCcEEEccccCCCCCCCccccCCCCccEEEecCCc-ccc-ccccccccCC-------CccEEEccCCcccc
Q 040195 128 KEIG--SLLKLQTLALYYNNLTGQLPDFVGNLSALQVIYIRGNS-LGG-KIPTTLGLLR-------NLVYLNVNENQFWY 196 (472)
Q Consensus 128 ~~l~--~l~~L~~L~l~~~~i~~~~~~~l~~~~~L~~L~l~~~~-~~~-~~~~~l~~~~-------~L~~L~l~~~~l~~ 196 (472)
..++ ++++|++|++++|.+.+..|..+..+++|++|++++|. +++ ..|..+..++ +|++|++++|.+.
T Consensus 483 ~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~- 561 (876)
T 4ecn_A 483 EELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE- 561 (876)
T ss_dssp SCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-
T ss_pred hhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-
Confidence 8877 99999999999999888999999999999999999998 876 6776666555 9999999999873
Q ss_pred ccccccccCh-hhhcCCCCccEEEcccccccccCCccCcCCCCCCEEecCCCcccccccccccccCC-CCeEEcCCCcCC
Q 040195 197 VSSFSGSLPF-DILVNLPNLKKLCIAENNFVGSIPDSLSNASNLELLELAGNQFEGKVSIDFSSLKN-LAVLNLERNNLG 274 (472)
Q Consensus 197 ~~~~~~~~~~-~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~-L~~L~l~~~~~~ 274 (472)
.+|. ..+..+++|+.|++++|.+. .+| .+..+++|+.|++++|.+. ..+..+..+++ |+.|++++|.+.
T Consensus 562 ------~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp-~~~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~ 632 (876)
T 4ecn_A 562 ------EFPASASLQKMVKLGLLDCVHNKVR-HLE-AFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLK 632 (876)
T ss_dssp ------BCCCHHHHTTCTTCCEEECTTSCCC-BCC-CCCTTSEESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCC
T ss_pred ------ccCChhhhhcCCCCCEEECCCCCcc-cch-hhcCCCcceEEECcCCccc-cchHHHhhccccCCEEECcCCCCC
Confidence 4443 35778999999999999998 666 7899999999999999998 66777889998 999999999886
Q ss_pred CCCCCCcchhhhhcccCCCcCCchhhhcc-ccccEEEeecccccCcccc---ccc--CccCcceEeccccccccCcchhh
Q 040195 275 IGTANDLGFVTFLTNCSSLKLPHSIANLS-STMTHFYIGGNQILGIIHF---GIR--NLVNLIALGMQSNQLHGTIPDVI 348 (472)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~l~~l~l~~~~~~~~~~~---~l~--~~~~L~~L~l~~~~i~~~~~~~~ 348 (472)
. +|..+.... ++|+.|++++|.+....+. .+. .+++|+.|++++|.+....+..+
T Consensus 633 ~-------------------lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~~lp~~~~ 693 (876)
T 4ecn_A 633 Y-------------------IPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELF 693 (876)
T ss_dssp S-------------------CCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCCSCCHHHH
T ss_pred c-------------------CchhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCCccCHHHH
Confidence 2 222222221 2599999999999765432 222 34589999999999994444455
Q ss_pred cCCCCCcEEEccCCcCccccccchh--------cccccCeeeccCCcccccCCcCcc--CCCCCceEeecCCcccccCCh
Q 040195 349 GELKNLQILSLFGNFLHGSIPSSLG--------NLTKLANLELSSNSLQGNIPLSVG--NCQNLIGFDASHITLTGALPQ 418 (472)
Q Consensus 349 ~~~~~L~~L~L~~n~l~~~~~~~l~--------~~~~L~~L~l~~~~~~~~~~~~~~--~~~~L~~L~ls~~~~~~~~~~ 418 (472)
..+++|+.|++++|.+. .+|..+. .+++|++|++++|+++ .+|..+. .+++|+.|++++|.+.+ +|.
T Consensus 694 ~~l~~L~~L~Ls~N~L~-~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~-~lp~~l~~~~l~~L~~L~Ls~N~L~~-lp~ 770 (876)
T 4ecn_A 694 ATGSPISTIILSNNLMT-SIPENSLKPKDGNYKNTYLLTTIDLRFNKLT-SLSDDFRATTLPYLSNMDVSYNCFSS-FPT 770 (876)
T ss_dssp HTTCCCSEEECCSCCCS-CCCTTSSSCTTSCCTTGGGCCEEECCSSCCC-CCCGGGSTTTCTTCCEEECCSSCCSS-CCC
T ss_pred ccCCCCCEEECCCCcCC-ccChHHhccccccccccCCccEEECCCCCCc-cchHHhhhccCCCcCEEEeCCCCCCc-cch
Confidence 68999999999999998 5554333 2349999999999999 7888887 89999999999999995 898
Q ss_pred hhhhhcccceEEEcCC------CcccccccccccCCCCCceEeccCCeeccccCCccc
Q 040195 419 QLLSITTLSLYLDLSH------NLLNGSLLLQVGNLKNLILLDISGNQFSGVIPVTLS 470 (472)
Q Consensus 419 ~l~~~~~l~~~L~ls~------n~l~~~~~~~l~~~~~L~~L~L~~n~~~~~~p~~~~ 470 (472)
.+..+++|+ .|++++ |++.+.+|..|.++++|+.|+|++|.+ +.+|..+.
T Consensus 771 ~l~~L~~L~-~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L-~~Ip~~l~ 826 (876)
T 4ecn_A 771 QPLNSSQLK-AFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDI-RKVDEKLT 826 (876)
T ss_dssp GGGGCTTCC-EEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCC
T ss_pred hhhcCCCCC-EEECCCCCCcccccccccChHHHhcCCCCCEEECCCCCC-CccCHhhc
Confidence 999999999 999976 788888999999999999999999999 68888764
No 20
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=100.00 E-value=4.3e-39 Score=316.58 Aligned_cols=371 Identities=18% Similarity=0.175 Sum_probs=287.3
Q ss_pred CceEEEECCCCccCcccCccccCCCCccEEeccCCcCcc-CcchhhhcCCCCCEEEccCcccCCCCCcccCCCCCCcEEE
Q 040195 38 QRVTELDLSNQRIGGVLSPYVGNLSFLRYINLSDNGFHG-EIPQEIGNLYRLEKLELSNNSFSGTIPTNLSRCSELTHLR 116 (472)
Q Consensus 38 ~~l~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~-~~~~~~~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~ 116 (472)
+++++|++++|.+.+..+..+.++++|++|++++|.+.. ..+..|.++++|++|++++|.+.+..|..|.++++|++|+
T Consensus 30 ~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 109 (455)
T 3v47_A 30 AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLT 109 (455)
T ss_dssp TTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEEE
T ss_pred CccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhccCcccCCEEe
Confidence 789999999999999888999999999999999998763 4567899999999999999999877788999999999999
Q ss_pred cccCcCcccCCcc--ccCCCCCcEEEccccCCCCCCCcc-ccCCCCccEEEecCCccccccccccccC--CCccEEEccC
Q 040195 117 VANNKLEGQIPKE--IGSLLKLQTLALYYNNLTGQLPDF-VGNLSALQVIYIRGNSLGGKIPTTLGLL--RNLVYLNVNE 191 (472)
Q Consensus 117 l~~~~~~~~~~~~--l~~l~~L~~L~l~~~~i~~~~~~~-l~~~~~L~~L~l~~~~~~~~~~~~l~~~--~~L~~L~l~~ 191 (472)
+++|.+++..+.. +..+++|++|++++|.+.+..|.. +..+++|++|++++|.+++..+..+..+ .+|+.+++++
T Consensus 110 L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~~ 189 (455)
T 3v47_A 110 LTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSS 189 (455)
T ss_dssp CTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEEEECTT
T ss_pred CCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhhhhcccccccccccccc
Confidence 9999998644443 889999999999999999776765 7899999999999999988777777766 7899999999
Q ss_pred CccccccccccccCh---hhhcCCCCccEEEcccccccccCCccCcC---CCCCCEEecCCCcccccccccccccCCCCe
Q 040195 192 NQFWYVSSFSGSLPF---DILVNLPNLKKLCIAENNFVGSIPDSLSN---ASNLELLELAGNQFEGKVSIDFSSLKNLAV 265 (472)
Q Consensus 192 ~~l~~~~~~~~~~~~---~~~~~~~~L~~L~l~~~~l~~~~~~~l~~---~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~ 265 (472)
|.+....... +.. ..+...++|++|++++|.+.+..+..+.. .++|+.|++++|........ ...++.+..
T Consensus 190 n~l~~~~~~~--~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~-~~~~~~~~~ 266 (455)
T 3v47_A 190 ITLQDMNEYW--LGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFG-HTNFKDPDN 266 (455)
T ss_dssp CBCTTCSTTC--TTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTT-CCSSCCCCT
T ss_pred Ccccccchhh--ccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccccc-hhhhccCcc
Confidence 9986654311 111 11235678999999999988766555533 38899999999876532111 111111110
Q ss_pred EEcCCCcCCCCCCCCcchhhhhcccCCCcCCchhhhccccccEEEeecccccCcccccccCccCcceEeccccccccCcc
Q 040195 266 LNLERNNLGIGTANDLGFVTFLTNCSSLKLPHSIANLSSTMTHFYIGGNQILGIIHFGIRNLVNLIALGMQSNQLHGTIP 345 (472)
Q Consensus 266 L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~ 345 (472)
..+.+ ...++++.+++++|.+....+..+..+++|++|++++|.+.+..+
T Consensus 267 ~~~~~------------------------------~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~ 316 (455)
T 3v47_A 267 FTFKG------------------------------LEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDD 316 (455)
T ss_dssp TTTGG------------------------------GTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECT
T ss_pred ccccc------------------------------ccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccCh
Confidence 00000 011367788888887777777777888888888888888887777
Q ss_pred hhhcCCCCCcEEEccCCcCccccccchhcccccCeeeccCCcccccCCcCccCCCCCceEeecCCcccccCChhhhhhcc
Q 040195 346 DVIGELKNLQILSLFGNFLHGSIPSSLGNLTKLANLELSSNSLQGNIPLSVGNCQNLIGFDASHITLTGALPQQLLSITT 425 (472)
Q Consensus 346 ~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ls~~~~~~~~~~~l~~~~~ 425 (472)
..|..+++|++|++++|.+.+..+..+..+++|++|++++|.+++..+..+..+++|++|++++|++++..+..+..+++
T Consensus 317 ~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~ 396 (455)
T 3v47_A 317 NAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTS 396 (455)
T ss_dssp TTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTT
T ss_pred hHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhccccccccEEECCCCccccCCHhHhccCCc
Confidence 77888888888888888887666777788888888888888888767777888888888888888887544445677788
Q ss_pred cceEEEcCCCccccccc
Q 040195 426 LSLYLDLSHNLLNGSLL 442 (472)
Q Consensus 426 l~~~L~ls~n~l~~~~~ 442 (472)
|+ .|++++|++++..|
T Consensus 397 L~-~L~l~~N~l~~~~~ 412 (455)
T 3v47_A 397 LQ-KIWLHTNPWDCSCP 412 (455)
T ss_dssp CC-EEECCSSCBCCCTT
T ss_pred cc-EEEccCCCcccCCC
Confidence 88 88888888876544
No 21
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=100.00 E-value=4.9e-39 Score=323.86 Aligned_cols=422 Identities=18% Similarity=0.175 Sum_probs=318.8
Q ss_pred cccccceeeCCCCCceEEEECCCCccCcccCccccCCCCccEEeccCCcCccCcchhhhcCCCCCEEEccCcccCCCCCc
Q 040195 25 LCQWMGVTCGHRHQRVTELDLSNQRIGGVLSPYVGNLSFLRYINLSDNGFHGEIPQEIGNLYRLEKLELSNNSFSGTIPT 104 (472)
Q Consensus 25 ~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~ 104 (472)
.|.|.++ | +.+++.++..... + .++|++|++++|.+....+..|.++++|++|++++|.+.+..+.
T Consensus 3 ~C~~~~~-c----------~~~~~~l~~ip~~-~--~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~ 68 (549)
T 2z81_A 3 SCDASGV-C----------DGRSRSFTSIPSG-L--TAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGD 68 (549)
T ss_dssp EECTTSE-E----------ECTTSCCSSCCSC-C--CTTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTT
T ss_pred cCCCCce-E----------ECCCCcccccccc-C--CCCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChh
Confidence 4777665 5 5566666655443 2 37999999999999988888999999999999999999977788
Q ss_pred ccCCCCCCcEEEcccCcCcccCCccccCCCCCcEEEccccCCCC-CCCccccCCCCccEEEecCCcccccc-ccccccCC
Q 040195 105 NLSRCSELTHLRVANNKLEGQIPKEIGSLLKLQTLALYYNNLTG-QLPDFVGNLSALQVIYIRGNSLGGKI-PTTLGLLR 182 (472)
Q Consensus 105 ~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~i~~-~~~~~l~~~~~L~~L~l~~~~~~~~~-~~~l~~~~ 182 (472)
.|..+++|++|++++|.+++..+..++++++|++|++++|.+.+ ..+..+..+++|++|++++|.+.+.. +..+..++
T Consensus 69 ~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~ 148 (549)
T 2z81_A 69 AFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLT 148 (549)
T ss_dssp TTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCC
T ss_pred hccccccCCEEECCCCccCccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhccc
Confidence 89999999999999999997666679999999999999999985 34677899999999999999843344 46789999
Q ss_pred CccEEEccCCccccccccccccChhhhcCCCCccEEEcccccccccCCccCcCCCCCCEEecCCCcccccc---cccccc
Q 040195 183 NLVYLNVNENQFWYVSSFSGSLPFDILVNLPNLKKLCIAENNFVGSIPDSLSNASNLELLELAGNQFEGKV---SIDFSS 259 (472)
Q Consensus 183 ~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~---~~~l~~ 259 (472)
+|++|++++|.+... ....+..+++|++|+++++.+.......+..+++|+.|++++|.+++.. ......
T Consensus 149 ~L~~L~L~~n~l~~~-------~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~ 221 (549)
T 2z81_A 149 SLNELEIKALSLRNY-------QSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEV 221 (549)
T ss_dssp EEEEEEEEETTCCEE-------CTTTTTTCSEEEEEEEECSBSTTHHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCC
T ss_pred ccCeeeccCCccccc-------ChhhhhccccCceEecccCcccccchhhHhhcccccEEEccCCccccccccccchhhh
Confidence 999999999987432 3345668899999999999876433333457899999999999987542 222345
Q ss_pred cCCCCeEEcCCCcCCCCCCCCcch-hhhhccc------------------------------CCCc-----CCc------
Q 040195 260 LKNLAVLNLERNNLGIGTANDLGF-VTFLTNC------------------------------SSLK-----LPH------ 297 (472)
Q Consensus 260 l~~L~~L~l~~~~~~~~~~~~~~~-~~~~~~~------------------------------~~l~-----~~~------ 297 (472)
+++|+.|++++|.+.......+.. .....++ +.+. ++.
T Consensus 222 ~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~ 301 (549)
T 2z81_A 222 SSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYD 301 (549)
T ss_dssp CCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCC
T ss_pred hhcccceeccccccchhHHHHHHHHhhhhccccccccccccccccccccccchhhhhhhcccccccccccccchhhhccc
Confidence 789999999999775321111000 0000000 0000 010
Q ss_pred --hhhhccccccEEEeecccccCcccccccCccCcceEeccccccccCcc---hhhcCCCCCcEEEccCCcCccccc--c
Q 040195 298 --SIANLSSTMTHFYIGGNQILGIIHFGIRNLVNLIALGMQSNQLHGTIP---DVIGELKNLQILSLFGNFLHGSIP--S 370 (472)
Q Consensus 298 --~~~~~~~~l~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~---~~~~~~~~L~~L~L~~n~l~~~~~--~ 370 (472)
.......+++.++++++.+..+....+..+++|++|++++|.+.+..+ ..++.+++|++|++++|.+++..+ .
T Consensus 302 l~~~~~~~~~L~~L~l~~n~l~~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~ 381 (549)
T 2z81_A 302 LSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGE 381 (549)
T ss_dssp CCHHHHHSTTCCEEEEESSCCCCCCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHH
T ss_pred chhhhhhcccceEEEeccCccccCCHHHHhcCccccEEEccCCccccccccchhhhhccccCcEEEccCCcccccccchh
Confidence 012233578899999998876555445679999999999999987654 346788999999999999985432 4
Q ss_pred chhcccccCeeeccCCcccccCCcCccCCCCCceEeecCCcccccCChhh------------------hhhcccceEEEc
Q 040195 371 SLGNLTKLANLELSSNSLQGNIPLSVGNCQNLIGFDASHITLTGALPQQL------------------LSITTLSLYLDL 432 (472)
Q Consensus 371 ~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ls~~~~~~~~~~~l------------------~~~~~l~~~L~l 432 (472)
.+..+++|++|++++|+++ .+|..+..+++|++|++++|.+. .++..+ ..+++|+ .|++
T Consensus 382 ~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~~L~~L~Ls~N~l~-~l~~~~~~~L~~L~Ls~N~l~~~~~~l~~L~-~L~L 458 (549)
T 2z81_A 382 ILLTLKNLTSLDISRNTFH-PMPDSCQWPEKMRFLNLSSTGIR-VVKTCIPQTLEVLDVSNNNLDSFSLFLPRLQ-ELYI 458 (549)
T ss_dssp HGGGCTTCCEEECTTCCCC-CCCSCCCCCTTCCEEECTTSCCS-CCCTTSCTTCSEEECCSSCCSCCCCCCTTCC-EEEC
T ss_pred hhhcCCCCCEEECCCCCCc-cCChhhcccccccEEECCCCCcc-cccchhcCCceEEECCCCChhhhcccCChhc-EEEC
Confidence 5788999999999999999 68888888899999999999876 343322 2466777 8888
Q ss_pred CCCcccccccccccCCCCCceEeccCCeeccccCCccccC
Q 040195 433 SHNLLNGSLLLQVGNLKNLILLDISGNQFSGVIPVTLSIC 472 (472)
Q Consensus 433 s~n~l~~~~~~~l~~~~~L~~L~L~~n~~~~~~p~~~~~~ 472 (472)
++|+++ .+|. ...+++|+.|+|++|++++..|..|+++
T Consensus 459 s~N~l~-~ip~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l 496 (549)
T 2z81_A 459 SRNKLK-TLPD-ASLFPVLLVMKISRNQLKSVPDGIFDRL 496 (549)
T ss_dssp CSSCCS-SCCC-GGGCTTCCEEECCSSCCCCCCTTGGGGC
T ss_pred CCCccC-cCCC-cccCccCCEEecCCCccCCcCHHHHhcC
Confidence 888887 4454 4668889999999999888777766643
No 22
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=100.00 E-value=2.9e-37 Score=316.60 Aligned_cols=451 Identities=20% Similarity=0.215 Sum_probs=308.4
Q ss_pred CCCCCCCCCCCCCCCCCC----cccc----cceeeCC---------CCCceEEEECCCCccCcccCccccCCCCccEEec
Q 040195 7 PHQHDPSGVTSSWNNTIN----LCQW----MGVTCGH---------RHQRVTELDLSNQRIGGVLSPYVGNLSFLRYINL 69 (472)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~----~~~~----~~~~~~~---------~~~~l~~L~l~~~~~~~~~~~~l~~~~~L~~L~L 69 (472)
.|++|+...++.|+...+ .|.+ ..+.|.. -++++++|++++|.++...+..|.++++|++|+|
T Consensus 4 ~~~~~~~~~~~~~~~~~p~~~~~c~~~~~~~~~~c~~~~l~~vP~~lp~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~L 83 (635)
T 4g8a_A 4 WDYKDDDDKLAAANSSIPESWEPCVEVVPNITYQCMELNFYKIPDNLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDL 83 (635)
T ss_dssp ---------------------CCSEEEETTTEEECTTSCCSSCCSSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEC
T ss_pred cccCCCcchhhcccCCCCCCCCCccccCCCCEEECCCCCcCccCCCCCcCCCEEEeeCCCCCCCCHHHHhCCCCCCEEEC
Confidence 467777777777765443 2332 2345642 1257899999999999998899999999999999
Q ss_pred cCCcCccCcchhhhcCCCCCEEEccCcccCCCCCcccCCCCCCcEEEcccCcCcccCCccccCCCCCcEEEccccCCCCC
Q 040195 70 SDNGFHGEIPQEIGNLYRLEKLELSNNSFSGTIPTNLSRCSELTHLRVANNKLEGQIPKEIGSLLKLQTLALYYNNLTGQ 149 (472)
Q Consensus 70 ~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~i~~~ 149 (472)
++|.+..+.+++|.++++|++|+|++|.+....+..|.++++|++|++++|.++...+..|+++++|++|++++|.+...
T Consensus 84 s~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~ 163 (635)
T 4g8a_A 84 SRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSF 163 (635)
T ss_dssp TTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCC
T ss_pred CCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEECCCCcCCCCChhhhhcCcccCeeccccCccccC
Confidence 99999988888999999999999999999866667899999999999999999966666799999999999999998753
Q ss_pred -CCccccCCCCccEEEecCCccccccccccccCCCc----cEEEccCCccccccccc-----------------cccCh-
Q 040195 150 -LPDFVGNLSALQVIYIRGNSLGGKIPTTLGLLRNL----VYLNVNENQFWYVSSFS-----------------GSLPF- 206 (472)
Q Consensus 150 -~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L----~~L~l~~~~l~~~~~~~-----------------~~~~~- 206 (472)
.|..+..+++|++|++++|.+++..+..+..+.++ ..++++.|.+..+.... ..+..
T Consensus 164 ~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~l~~~~~~~~ls~n~l~~i~~~~~~~~~~~~l~l~~n~~~~~~~~~ 243 (635)
T 4g8a_A 164 KLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKT 243 (635)
T ss_dssp CCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSSHHHHHH
T ss_pred CCchhhccchhhhhhcccCccccccccccccchhhhhhhhhhhhcccCcccccCcccccchhhhhhhhhcccccccccch
Confidence 57788899999999999999886666655544332 24555555432211100 00000
Q ss_pred --------------------------------------------------------hhhcCCCCccEEEcccccccccCC
Q 040195 207 --------------------------------------------------------DILVNLPNLKKLCIAENNFVGSIP 230 (472)
Q Consensus 207 --------------------------------------------------------~~~~~~~~L~~L~l~~~~l~~~~~ 230 (472)
..+....+++.+.+.++.+...
T Consensus 244 ~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~-- 321 (635)
T 4g8a_A 244 CIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDGIIDLFNCLTNVSSFSLVSVTIERV-- 321 (635)
T ss_dssp HHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGGGSEEEEEEEECCCSCEEECTTTTGGGTTCSEEEEESCEEEEC--
T ss_pred hhcCCcccccccccccccccccccccccccccccccchhhhhhhhhhhcccccchhhhhhhhcccccccccccccccc--
Confidence 0011112233333333322211
Q ss_pred ccCcCCCCCCEEecCCCcccccc-------------------cccccccCCCCeEEcCCCcCCCCCCCCcchhhhhcccC
Q 040195 231 DSLSNASNLELLELAGNQFEGKV-------------------SIDFSSLKNLAVLNLERNNLGIGTANDLGFVTFLTNCS 291 (472)
Q Consensus 231 ~~l~~~~~L~~L~l~~~~~~~~~-------------------~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~ 291 (472)
..+.....++.|++.++.+.... ......+++|+.+++++|.+...+...... ....+++
T Consensus 322 ~~~~~~~~L~~L~l~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~-~~~~~L~ 400 (635)
T 4g8a_A 322 KDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSD-FGTISLK 400 (635)
T ss_dssp GGGGSCCCCSEEEEESCEESSCCCCBCTTCCEEEEESCCSCCBCCCCBCTTCCEEECCSSCCBEEEECCHHH-HSCSCCC
T ss_pred cccccchhhhhhhcccccccCcCcccchhhhhcccccccCCCCcccccccccccchhhccccccccccccch-hhhhhhh
Confidence 11233344555555444332211 112345778888888888764321111000 0111111
Q ss_pred CCc--------CCchhhhccccccEEEeecccccCcc-cccccCccCcceEeccccccccCcchhhcCCCCCcEEEccCC
Q 040195 292 SLK--------LPHSIANLSSTMTHFYIGGNQILGII-HFGIRNLVNLIALGMQSNQLHGTIPDVIGELKNLQILSLFGN 362 (472)
Q Consensus 292 ~l~--------~~~~~~~~~~~l~~l~l~~~~~~~~~-~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~L~~n 362 (472)
.+. .+..+ ...++++.+++..+...... ...+..+++++.++++.|.+....+..+..+++|+.|++++|
T Consensus 401 ~L~~~~~~~~~~~~~~-~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N 479 (635)
T 4g8a_A 401 YLDLSFNGVITMSSNF-LGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGN 479 (635)
T ss_dssp EEECCSCSEEEECSCC-TTCTTCCEEECTTSEEESTTSSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTC
T ss_pred hhhccccccccccccc-cccccccchhhhhccccccccccccccccccccccccccccccccccccccchhhhhhhhhhc
Confidence 111 11111 22347888888877666543 346778899999999999998888888888999999999999
Q ss_pred cC-ccccccchhcccccCeeeccCCcccccCCcCccCCCCCceEeecCCcccccCChhhhhhcccceEEEcCCCcccccc
Q 040195 363 FL-HGSIPSSLGNLTKLANLELSSNSLQGNIPLSVGNCQNLIGFDASHITLTGALPQQLLSITTLSLYLDLSHNLLNGSL 441 (472)
Q Consensus 363 ~l-~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ls~~~~~~~~~~~l~~~~~l~~~L~ls~n~l~~~~ 441 (472)
.+ ....+..+..+++|++|++++|++++..+..+..+++|++|++++|++++..+..+..+++|+ .|++++|++++..
T Consensus 480 ~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~-~L~Ls~N~l~~~~ 558 (635)
T 4g8a_A 480 SFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQ-VLDYSLNHIMTSK 558 (635)
T ss_dssp EEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCBCCCGGGTTCTTCC-EEECTTSCCCBCC
T ss_pred ccccccCchhhhhccccCEEECCCCccCCcChHHHcCCCCCCEEECCCCcCCCCChhHHhCCCCCC-EEECCCCcCCCCC
Confidence 75 445777888999999999999999988888899999999999999999866677788899999 9999999999888
Q ss_pred cccccCC-CCCceEeccCCeec
Q 040195 442 LLQVGNL-KNLILLDISGNQFS 462 (472)
Q Consensus 442 ~~~l~~~-~~L~~L~L~~n~~~ 462 (472)
|+.+..+ ++|+.|+|++|+++
T Consensus 559 ~~~l~~l~~~L~~L~L~~Np~~ 580 (635)
T 4g8a_A 559 KQELQHFPSSLAFLNLTQNDFA 580 (635)
T ss_dssp SSCTTCCCTTCCEEECTTCCBC
T ss_pred HHHHHhhhCcCCEEEeeCCCCc
Confidence 8888887 68999999999886
No 23
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=100.00 E-value=5.9e-37 Score=308.97 Aligned_cols=389 Identities=18% Similarity=0.158 Sum_probs=242.3
Q ss_pred EEEECCCCccCcccCccccCCCCccEEeccCCcCccCcchhhhcCCCCCEEEccCcccCCCCCcccCCCCCCcEEEcccC
Q 040195 41 TELDLSNQRIGGVLSPYVGNLSFLRYINLSDNGFHGEIPQEIGNLYRLEKLELSNNSFSGTIPTNLSRCSELTHLRVANN 120 (472)
Q Consensus 41 ~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~ 120 (472)
++++++++.++.... .+ .++|++|++++|.+....+..|.++++|++|++++|.+.+..|..|..+++|++|++++|
T Consensus 34 ~~l~ls~~~L~~ip~-~~--~~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N 110 (562)
T 3a79_B 34 SMVDYSNRNLTHVPK-DL--PPRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHN 110 (562)
T ss_dssp CEEECTTSCCCSCCT-TS--CTTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTS
T ss_pred cEEEcCCCCCccCCC-CC--CCCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCC
Confidence 566666666654332 22 156666666666666555556666666666666666666555555666666666666666
Q ss_pred cCcccCCccccCCCCCcEEEccccCCCCC-CCccccCCCCccEEEecCCccccccccccccCCCc--cEEEccCCcc--c
Q 040195 121 KLEGQIPKEIGSLLKLQTLALYYNNLTGQ-LPDFVGNLSALQVIYIRGNSLGGKIPTTLGLLRNL--VYLNVNENQF--W 195 (472)
Q Consensus 121 ~~~~~~~~~l~~l~~L~~L~l~~~~i~~~-~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L--~~L~l~~~~l--~ 195 (472)
.++ .+|.. .+++|++|++++|.+.+. .|..+..+++|++|++++|.++.. .+..+++| ++|++++|.+ .
T Consensus 111 ~l~-~lp~~--~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~---~~~~l~~L~L~~L~L~~n~l~~~ 184 (562)
T 3a79_B 111 RLQ-NISCC--PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQL---DLLPVAHLHLSCILLDLVSYHIK 184 (562)
T ss_dssp CCC-EECSC--CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTT---TTGGGTTSCEEEEEEEESSCCCC
T ss_pred cCC-ccCcc--ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCccccC---chhhhhhceeeEEEeeccccccc
Confidence 665 33433 566666666666666532 235566666666666666665532 23333333 6666665554 1
Q ss_pred cccc--c-----------------ccccChhh----------------------------hcCCC---------------
Q 040195 196 YVSS--F-----------------SGSLPFDI----------------------------LVNLP--------------- 213 (472)
Q Consensus 196 ~~~~--~-----------------~~~~~~~~----------------------------~~~~~--------------- 213 (472)
.... + .+.++... +...+
T Consensus 185 ~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l~~~ 264 (562)
T 3a79_B 185 GGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWK 264 (562)
T ss_dssp SSSCCEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEECHH
T ss_pred ccCcccccccCcceEEEEecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEecCCcCcHH
Confidence 1100 0 00000011 11122
Q ss_pred ------------CccEEEcccccccccCCccC-----cCCCCCCEEecCCCccccccccccc---ccCCCCeEEcCCCcC
Q 040195 214 ------------NLKKLCIAENNFVGSIPDSL-----SNASNLELLELAGNQFEGKVSIDFS---SLKNLAVLNLERNNL 273 (472)
Q Consensus 214 ------------~L~~L~l~~~~l~~~~~~~l-----~~~~~L~~L~l~~~~~~~~~~~~l~---~l~~L~~L~l~~~~~ 273 (472)
+|++|++++|.+.+.+|..+ ..++.|+.+++..+.+ ......+. ...+|++|++++|.+
T Consensus 265 ~~~~~~~~~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~-~~p~~~~~~~~~~~~L~~L~l~~n~~ 343 (562)
T 3a79_B 265 CSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVF-LFSKEALYSVFAEMNIKMLSISDTPF 343 (562)
T ss_dssp HHHHHHHHHTTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCC-SSCHHHHHHHHHTCCCSEEEEESSCC
T ss_pred HHHHHHHhhhcccccEEEEeccEeeccccchhhhcccccchheehhhccccee-ecChhhhhhhhccCcceEEEccCCCc
Confidence 44444444444443333332 2222222222222222 00001111 114566666666655
Q ss_pred CCCCCCCcchhhhhcccCCCcCCchhhhccccccEEEeecccccCcccccccCccCcceEeccccccccC--cchhhcCC
Q 040195 274 GIGTANDLGFVTFLTNCSSLKLPHSIANLSSTMTHFYIGGNQILGIIHFGIRNLVNLIALGMQSNQLHGT--IPDVIGEL 351 (472)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~--~~~~~~~~ 351 (472)
..... ....++++.|++++|.++...+..+..+++|++|++++|.+.+. .|..+..+
T Consensus 344 ~~~~~---------------------~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l 402 (562)
T 3a79_B 344 IHMVC---------------------PPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNM 402 (562)
T ss_dssp CCCCC---------------------CSSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTC
T ss_pred ccccC---------------------ccCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCC
Confidence 32110 02234899999999999988888899999999999999999863 34668899
Q ss_pred CCCcEEEccCCcCcccccc-chhcccccCeeeccCCcccccCCcCccCCCCCceEeecCCcccccCChhhhhhcccceEE
Q 040195 352 KNLQILSLFGNFLHGSIPS-SLGNLTKLANLELSSNSLQGNIPLSVGNCQNLIGFDASHITLTGALPQQLLSITTLSLYL 430 (472)
Q Consensus 352 ~~L~~L~L~~n~l~~~~~~-~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ls~~~~~~~~~~~l~~~~~l~~~L 430 (472)
++|++|++++|.+.+.++. .+..+++|++|++++|++++.++..+. ++|++|++++|.++ .+|..+..+++++ .|
T Consensus 403 ~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~-~ip~~~~~l~~L~-~L 478 (562)
T 3a79_B 403 SSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIM-SIPKDVTHLQALQ-EL 478 (562)
T ss_dssp TTCCEEECTTSCCBSCCSSCCCCCCTTCCEEECCSSCCCGGGGSSCC--TTCSEEECCSSCCC-CCCTTTTSSCCCS-EE
T ss_pred CCCCEEECCCCcCCCccChhhhcCcccCCEEECCCCCCCcchhhhhc--CcCCEEECCCCcCc-ccChhhcCCCCCC-EE
Confidence 9999999999999874444 577889999999999999876665443 79999999999998 7888888999999 99
Q ss_pred EcCCCcccccccccccCCCCCceEeccCCeeccc
Q 040195 431 DLSHNLLNGSLLLQVGNLKNLILLDISGNQFSGV 464 (472)
Q Consensus 431 ~ls~n~l~~~~~~~l~~~~~L~~L~L~~n~~~~~ 464 (472)
++++|+++...+..+..+++|+.|++++|++...
T Consensus 479 ~L~~N~l~~l~~~~~~~l~~L~~L~l~~N~~~c~ 512 (562)
T 3a79_B 479 NVASNQLKSVPDGVFDRLTSLQYIWLHDNPWDCT 512 (562)
T ss_dssp ECCSSCCCCCCTTSTTTCTTCCCEECCSCCBCCC
T ss_pred ECCCCCCCCCCHHHHhcCCCCCEEEecCCCcCCC
Confidence 9999999954444489999999999999998743
No 24
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=100.00 E-value=1.2e-36 Score=304.26 Aligned_cols=414 Identities=20% Similarity=0.193 Sum_probs=313.3
Q ss_pred EEEECCCCccCcccCccccCCCCccEEeccCCcCccCcchhhhcCCCCCEEEccCcccCCCCCcccCCCCCCcEEEcccC
Q 040195 41 TELDLSNQRIGGVLSPYVGNLSFLRYINLSDNGFHGEIPQEIGNLYRLEKLELSNNSFSGTIPTNLSRCSELTHLRVANN 120 (472)
Q Consensus 41 ~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~ 120 (472)
++++++++.++... ..+. ++|++|++++|.+....+..|.++++|++|++++|.+.+..|..|.++++|++|++++|
T Consensus 3 ~~l~ls~n~l~~ip-~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N 79 (520)
T 2z7x_B 3 FLVDRSKNGLIHVP-KDLS--QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHN 79 (520)
T ss_dssp CEEECTTSCCSSCC-CSCC--TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSS
T ss_pred ceEecCCCCccccc-cccc--ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCC
Confidence 57999999998654 3343 89999999999999888889999999999999999999777889999999999999999
Q ss_pred cCcccCCccccCCCCCcEEEccccCCCC-CCCccccCCCCccEEEecCCccccccccccccCCCc--cEEEccCCcc--c
Q 040195 121 KLEGQIPKEIGSLLKLQTLALYYNNLTG-QLPDFVGNLSALQVIYIRGNSLGGKIPTTLGLLRNL--VYLNVNENQF--W 195 (472)
Q Consensus 121 ~~~~~~~~~l~~l~~L~~L~l~~~~i~~-~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L--~~L~l~~~~l--~ 195 (472)
.++ .+|.. .+++|++|++++|.+.+ ..|..+..+++|++|++++|.+++ ..+..+++| ++|++++|.+ .
T Consensus 80 ~l~-~lp~~--~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~---~~~~~l~~L~L~~L~l~~n~l~~~ 153 (520)
T 2z7x_B 80 KLV-KISCH--PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK---SSVLPIAHLNISKVLLVLGETYGE 153 (520)
T ss_dssp CCC-EEECC--CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG---GGGGGGTTSCEEEEEEEECTTTTS
T ss_pred cee-ecCcc--ccCCccEEeccCCccccccchhhhccCCcceEEEecCcccch---hhccccccceeeEEEeeccccccc
Confidence 998 45555 89999999999999986 367899999999999999999875 456777788 9999999987 2
Q ss_pred cc-----ccc--------------ccccChhhhcCCCCccEEEccccc-------ccccCCccCcCCCCCCEEecCCCcc
Q 040195 196 YV-----SSF--------------SGSLPFDILVNLPNLKKLCIAENN-------FVGSIPDSLSNASNLELLELAGNQF 249 (472)
Q Consensus 196 ~~-----~~~--------------~~~~~~~~~~~~~~L~~L~l~~~~-------l~~~~~~~l~~~~~L~~L~l~~~~~ 249 (472)
.. ... .+.++...+..+++|+.+++++|. +.+.++ .+..+++|+.|+++++.+
T Consensus 154 ~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~-~l~~l~~L~~L~l~~~~l 232 (520)
T 2z7x_B 154 KEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILA-KLQTNPKLSNLTLNNIET 232 (520)
T ss_dssp SCCTTTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHH-GGGGCTTCCEEEEEEEEE
T ss_pred ccccccccccccceEEEEeccCcchhhhhhhhhhcccceeeccccccccccccceeecchh-hhccccchhhcccccccc
Confidence 11 110 011222234456778888887775 443333 466777778877777766
Q ss_pred cccccccc---cccCCCCeEEcCCCcCCCCCCCCc-ch-hhhhcccCCC-------cCC-chhhhc--cccccEEEeecc
Q 040195 250 EGKVSIDF---SSLKNLAVLNLERNNLGIGTANDL-GF-VTFLTNCSSL-------KLP-HSIANL--SSTMTHFYIGGN 314 (472)
Q Consensus 250 ~~~~~~~l---~~l~~L~~L~l~~~~~~~~~~~~~-~~-~~~~~~~~~l-------~~~-~~~~~~--~~~l~~l~l~~~ 314 (472)
.+.....+ ...++|++|++++|.+.......+ .. ...+..++.+ .+| ..+... ..+++.|+++++
T Consensus 233 ~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~~~p~~~~~~~~~~~~L~~L~l~~n 312 (520)
T 2z7x_B 233 TWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGT 312 (520)
T ss_dssp EHHHHHHHHHHHHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCCCSCTHHHHHHHHTCCCSEEEEESS
T ss_pred CHHHHHHHHHHhhhCcccEEEeecccccCccccchhhcccccCceeEeccccccceecchhhhhcccccCceeEEEcCCC
Confidence 54322221 124578888888887652111111 00 0011111111 233 122222 136999999999
Q ss_pred cccCcccccccCccCcceEeccccccccCcchhhcCCCCCcEEEccCCcCcc--ccccchhcccccCeeeccCCcccccC
Q 040195 315 QILGIIHFGIRNLVNLIALGMQSNQLHGTIPDVIGELKNLQILSLFGNFLHG--SIPSSLGNLTKLANLELSSNSLQGNI 392 (472)
Q Consensus 315 ~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~L~~n~l~~--~~~~~l~~~~~L~~L~l~~~~~~~~~ 392 (472)
.+..... ...+++|++|++++|.+.+..|..++.+++|++|++++|.+.+ ..+..+..+++|++|++++|.+++.+
T Consensus 313 ~l~~~~~--~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l 390 (520)
T 2z7x_B 313 RMVHMLC--PSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDE 390 (520)
T ss_dssp CCCCCCC--CSSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCG
T ss_pred ccccccc--hhhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCccc
Confidence 8876432 2688999999999999998888899999999999999999986 45677899999999999999999756
Q ss_pred Cc-CccCCCCCceEeecCCcccccCChhhhhhcccceEEEcCCCcccccccccccCCCCCceEeccCCeeccccCCc-cc
Q 040195 393 PL-SVGNCQNLIGFDASHITLTGALPQQLLSITTLSLYLDLSHNLLNGSLLLQVGNLKNLILLDISGNQFSGVIPVT-LS 470 (472)
Q Consensus 393 ~~-~~~~~~~L~~L~ls~~~~~~~~~~~l~~~~~l~~~L~ls~n~l~~~~~~~l~~~~~L~~L~L~~n~~~~~~p~~-~~ 470 (472)
+. .+..+++|+.|++++|.+++..+..+. ++++ .|++++|+++ .+|..+..+++|+.|++++|+++ .+|.. |.
T Consensus 391 ~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~--~~L~-~L~Ls~N~l~-~ip~~~~~l~~L~~L~L~~N~l~-~l~~~~~~ 465 (520)
T 2z7x_B 391 KKGDCSWTKSLLSLNMSSNILTDTIFRCLP--PRIK-VLDLHSNKIK-SIPKQVVKLEALQELNVASNQLK-SVPDGIFD 465 (520)
T ss_dssp GGCSCCCCTTCCEEECCSSCCCGGGGGSCC--TTCC-EEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCC-CCCTTTTT
T ss_pred ccchhccCccCCEEECcCCCCCcchhhhhc--ccCC-EEECCCCccc-ccchhhhcCCCCCEEECCCCcCC-ccCHHHhc
Confidence 55 478899999999999999876666554 6788 9999999999 67777779999999999999998 56665 55
Q ss_pred c
Q 040195 471 I 471 (472)
Q Consensus 471 ~ 471 (472)
+
T Consensus 466 ~ 466 (520)
T 2z7x_B 466 R 466 (520)
T ss_dssp T
T ss_pred c
Confidence 4
No 25
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=100.00 E-value=3.3e-35 Score=289.22 Aligned_cols=345 Identities=28% Similarity=0.381 Sum_probs=239.8
Q ss_pred CCceEEEECCCCccCcccCccccCCCCccEEeccCCcCccCcchhhhcCCCCCEEEccCcccCCCCCcccCCCCCCcEEE
Q 040195 37 HQRVTELDLSNQRIGGVLSPYVGNLSFLRYINLSDNGFHGEIPQEIGNLYRLEKLELSNNSFSGTIPTNLSRCSELTHLR 116 (472)
Q Consensus 37 ~~~l~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~ 116 (472)
.++++.|++.++.+.... .+..+++|++|++++|.+....+ +.++++|++|++++|.+.+..+ +.++++|++|+
T Consensus 45 l~~l~~L~l~~~~i~~l~--~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~ 118 (466)
T 1o6v_A 45 LDQVTTLQADRLGIKSID--GVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGLT 118 (466)
T ss_dssp HHTCCEEECCSSCCCCCT--TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG--GTTCTTCCEEE
T ss_pred hccccEEecCCCCCccCc--chhhhcCCCEEECCCCccCCchh--hhccccCCEEECCCCccccChh--hcCCCCCCEEE
Confidence 367888888888876542 47788888888888888775443 7888888888888888874433 78888888888
Q ss_pred cccCcCcccCCccccCCCCCcEEEccccCCCCCCCccccCCCCccEEEecCCccccccccccccCCCccEEEccCCcccc
Q 040195 117 VANNKLEGQIPKEIGSLLKLQTLALYYNNLTGQLPDFVGNLSALQVIYIRGNSLGGKIPTTLGLLRNLVYLNVNENQFWY 196 (472)
Q Consensus 117 l~~~~~~~~~~~~l~~l~~L~~L~l~~~~i~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~ 196 (472)
+++|.++.. + .+..+++|++|++++|.+.+ .+ .+..+++|++|++++ .+.+ ...+..+++|++|++++|.+..
T Consensus 119 L~~n~l~~~-~-~~~~l~~L~~L~l~~n~l~~-~~-~~~~l~~L~~L~l~~-~~~~--~~~~~~l~~L~~L~l~~n~l~~ 191 (466)
T 1o6v_A 119 LFNNQITDI-D-PLKNLTNLNRLELSSNTISD-IS-ALSGLTSLQQLSFGN-QVTD--LKPLANLTTLERLDISSNKVSD 191 (466)
T ss_dssp CCSSCCCCC-G-GGTTCTTCSEEEEEEEEECC-CG-GGTTCTTCSEEEEEE-SCCC--CGGGTTCTTCCEEECCSSCCCC
T ss_pred CCCCCCCCC-h-HHcCCCCCCEEECCCCccCC-Ch-hhccCCcccEeecCC-cccC--chhhccCCCCCEEECcCCcCCC
Confidence 888888743 3 37788888888888888874 33 477888888888863 3332 2337778888888888887644
Q ss_pred ccccccccChhhhcCCCCccEEEcccccccccCCccCcCCCCCCEEecCCCcccccccccccccCCCCeEEcCCCcCCCC
Q 040195 197 VSSFSGSLPFDILVNLPNLKKLCIAENNFVGSIPDSLSNASNLELLELAGNQFEGKVSIDFSSLKNLAVLNLERNNLGIG 276 (472)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~ 276 (472)
+. .+..+++|++|++++|.+.+..+ ++.+++|+.|++++|.+++. ..+..+++|++|++++|.+...
T Consensus 192 ~~---------~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~ 258 (466)
T 1o6v_A 192 IS---------VLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNL 258 (466)
T ss_dssp CG---------GGGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCC
T ss_pred Ch---------hhccCCCCCEEEecCCccccccc--ccccCCCCEEECCCCCcccc--hhhhcCCCCCEEECCCCccccc
Confidence 32 24567888888888888775443 66778888888888877643 3567778888888888776521
Q ss_pred CCCCcchhhhhcccCCCcCCchhhhccccccEEEeecccccCcccccccCccCcceEeccccccccCcchhhcCCCCCcE
Q 040195 277 TANDLGFVTFLTNCSSLKLPHSIANLSSTMTHFYIGGNQILGIIHFGIRNLVNLIALGMQSNQLHGTIPDVIGELKNLQI 356 (472)
Q Consensus 277 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~ 356 (472)
. . ....++++.|++++|.++...+ +..+++|+.|++++|.+.+..+ +..+++|++
T Consensus 259 ~-------------------~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~ 313 (466)
T 1o6v_A 259 A-------------------P--LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP--ISNLKNLTY 313 (466)
T ss_dssp G-------------------G--GTTCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCSCCGG--GGGCTTCSE
T ss_pred h-------------------h--hhcCCCCCEEECCCCccCcccc--ccCCCccCeEEcCCCcccCchh--hcCCCCCCE
Confidence 1 0 1112367777777777665433 6667777777777777664433 566677777
Q ss_pred EEccCCcCccccccchhcccccCeeeccCCcccccCCcCccCCCCCceEeecCCcccccCChhhhhhcccceEEEcCCCc
Q 040195 357 LSLFGNFLHGSIPSSLGNLTKLANLELSSNSLQGNIPLSVGNCQNLIGFDASHITLTGALPQQLLSITTLSLYLDLSHNL 436 (472)
Q Consensus 357 L~L~~n~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ls~~~~~~~~~~~l~~~~~l~~~L~ls~n~ 436 (472)
|++++|.+.+..+ +..+++|++|++++|++++. ..+..+++|+.|++++|++.+..| +..++.++ .|++++|+
T Consensus 314 L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~-~L~l~~n~ 386 (466)
T 1o6v_A 314 LTLYFNNISDISP--VSSLTKLQRLFFYNNKVSDV--SSLANLTNINWLSAGHNQISDLTP--LANLTRIT-QLGLNDQA 386 (466)
T ss_dssp EECCSSCCSCCGG--GGGCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCBCGG--GTTCTTCC-EEECCCEE
T ss_pred EECcCCcCCCchh--hccCccCCEeECCCCccCCc--hhhccCCCCCEEeCCCCccCccch--hhcCCCCC-EEeccCCc
Confidence 7777777665443 55667777777777776643 356667777777777777764433 56666776 77777776
Q ss_pred ccc
Q 040195 437 LNG 439 (472)
Q Consensus 437 l~~ 439 (472)
+++
T Consensus 387 ~~~ 389 (466)
T 1o6v_A 387 WTN 389 (466)
T ss_dssp EEC
T ss_pred ccC
Confidence 664
No 26
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=100.00 E-value=2e-34 Score=277.29 Aligned_cols=349 Identities=17% Similarity=0.151 Sum_probs=208.2
Q ss_pred CCCCCCCCCccc-ccceeeCCCCCceEEEECCCCccCcccCccccCCCCccEEeccCCcCccCcchhhhcCCCCCEEEcc
Q 040195 16 TSSWNNTINLCQ-WMGVTCGHRHQRVTELDLSNQRIGGVLSPYVGNLSFLRYINLSDNGFHGEIPQEIGNLYRLEKLELS 94 (472)
Q Consensus 16 ~~~~~~~~~~~~-~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~ 94 (472)
++.|....+||. |.+..|.. +.+.+............-..+.++++|+++++.+....+..+..+++|++|+++
T Consensus 3 ~~~~~~~~~C~~~~~~~~c~~-----~~~~i~~~~~~~~~~~~~~~l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~ 77 (390)
T 3o6n_A 3 VKPRQPEYKCIDSNLQYDCVF-----YDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLN 77 (390)
T ss_dssp ----CCEECBCC------EEE-----ESCEECSSCCCCEESCSSGGGCCCSEEEEESCEESEECTHHHHHCCCCSEEECT
T ss_pred cCCCCCccceehhhhhhccce-----eeeeeecccccccccccccccCCceEEEecCCchhhCChhHhcccccCcEEECC
Confidence 578988889987 33344421 112222211111111112346889999999998886666668999999999999
Q ss_pred CcccCCCCCcccCCCCCCcEEEcccCcCcccCCccccCCCCCcEEEccccCCCCCCCccccCCCCccEEEecCCcccccc
Q 040195 95 NNSFSGTIPTNLSRCSELTHLRVANNKLEGQIPKEIGSLLKLQTLALYYNNLTGQLPDFVGNLSALQVIYIRGNSLGGKI 174 (472)
Q Consensus 95 ~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~i~~~~~~~l~~~~~L~~L~l~~~~~~~~~ 174 (472)
+|.+.+..+..|..+++|++|++++|.++...+..+.++++|++|++++|.+....+..+..+++|++|++++|.+++..
T Consensus 78 ~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~ 157 (390)
T 3o6n_A 78 DLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIE 157 (390)
T ss_dssp TSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCC
T ss_pred CCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCCccCcCCHHHhcCCCCCcEEECCCCccCccC
Confidence 99988777778899999999999999998777777889999999999999988544455678889999999998888666
Q ss_pred ccccccCCCccEEEccCCccccccccccccChhhhcCCCCccEEEcccccccccCCccCcCCCCCCEEecCCCccccccc
Q 040195 175 PTTLGLLRNLVYLNVNENQFWYVSSFSGSLPFDILVNLPNLKKLCIAENNFVGSIPDSLSNASNLELLELAGNQFEGKVS 254 (472)
Q Consensus 175 ~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~ 254 (472)
+..+..+++|++|++++|.+..++ +..+++|+.|++++|.+.. +...++|++|++++|.+.....
T Consensus 158 ~~~~~~l~~L~~L~l~~n~l~~~~----------~~~l~~L~~L~l~~n~l~~-----~~~~~~L~~L~l~~n~l~~~~~ 222 (390)
T 3o6n_A 158 DDTFQATTSLQNLQLSSNRLTHVD----------LSLIPSLFHANVSYNLLST-----LAIPIAVEELDASHNSINVVRG 222 (390)
T ss_dssp TTTTSSCTTCCEEECCSSCCSBCC----------GGGCTTCSEEECCSSCCSE-----EECCSSCSEEECCSSCCCEEEC
T ss_pred hhhccCCCCCCEEECCCCcCCccc----------cccccccceeecccccccc-----cCCCCcceEEECCCCeeeeccc
Confidence 667788888888888888763321 2234555666665555442 1223344455554444432211
Q ss_pred ccccccCCCCeEEcCCCcCCCCCCCCcchhhhhcccCCCcCCchhhhccccccEEEeecccccCcccccccCccCcceEe
Q 040195 255 IDFSSLKNLAVLNLERNNLGIGTANDLGFVTFLTNCSSLKLPHSIANLSSTMTHFYIGGNQILGIIHFGIRNLVNLIALG 334 (472)
Q Consensus 255 ~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~l~~~~~L~~L~ 334 (472)
...++ ++.|++++|.++.. ..+..+++|++|+
T Consensus 223 ---~~~~~-------------------------------------------L~~L~l~~n~l~~~--~~l~~l~~L~~L~ 254 (390)
T 3o6n_A 223 ---PVNVE-------------------------------------------LTILKLQHNNLTDT--AWLLNYPGLVEVD 254 (390)
T ss_dssp ---CCCSS-------------------------------------------CCEEECCSSCCCCC--GGGGGCTTCSEEE
T ss_pred ---ccccc-------------------------------------------ccEEECCCCCCccc--HHHcCCCCccEEE
Confidence 11123 33333333333322 2344555666666
Q ss_pred ccccccccCcchhhcCCCCCcEEEccCCcCccccccchhcccccCeeeccCCcccccCCcCccCCCCCceEeecCCcccc
Q 040195 335 MQSNQLHGTIPDVIGELKNLQILSLFGNFLHGSIPSSLGNLTKLANLELSSNSLQGNIPLSVGNCQNLIGFDASHITLTG 414 (472)
Q Consensus 335 l~~~~i~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ls~~~~~~ 414 (472)
+++|.+.+..+..+..+++|++|++++|++++ ++..+..+++|++|++++|+++ .++..+..+++|+.|++++|++.+
T Consensus 255 Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~l~~L~~L~L~~N~i~~ 332 (390)
T 3o6n_A 255 LSYNELEKIMYHPFVKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVT 332 (390)
T ss_dssp CCSSCCCEEESGGGTTCSSCCEEECCSSCCCE-EECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCC
T ss_pred CCCCcCCCcChhHccccccCCEEECCCCcCcc-cCcccCCCCCCCEEECCCCcce-ecCccccccCcCCEEECCCCccce
Confidence 66666655555555556666666666665552 3333344555555555555555 344444455555555555555542
Q ss_pred cCChhhhhhcccceEEEcCCCccc
Q 040195 415 ALPQQLLSITTLSLYLDLSHNLLN 438 (472)
Q Consensus 415 ~~~~~l~~~~~l~~~L~ls~n~l~ 438 (472)
++ +..+++++ .|++++|++.
T Consensus 333 -~~--~~~~~~L~-~L~l~~N~~~ 352 (390)
T 3o6n_A 333 -LK--LSTHHTLK-NLTLSHNDWD 352 (390)
T ss_dssp -CC--CCTTCCCS-EEECCSSCEE
T ss_pred -eC--chhhccCC-EEEcCCCCcc
Confidence 22 34444555 5555555554
No 27
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=100.00 E-value=9.9e-35 Score=292.74 Aligned_cols=388 Identities=20% Similarity=0.239 Sum_probs=287.5
Q ss_pred CCCccEEeccCCcCccCcchhhhcCCCCCEEEccCcccCCCCCcccCCCCCCcEEEcccCcCcccCCccccCCCCCcEEE
Q 040195 61 LSFLRYINLSDNGFHGEIPQEIGNLYRLEKLELSNNSFSGTIPTNLSRCSELTHLRVANNKLEGQIPKEIGSLLKLQTLA 140 (472)
Q Consensus 61 ~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~ 140 (472)
+...++++++++.++. +|..+. ++|++|++++|.+.+..+..|.++++|++|++++|.++...+..|.++++|++|+
T Consensus 30 ~~~~~~l~ls~~~L~~-ip~~~~--~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 106 (562)
T 3a79_B 30 NELESMVDYSNRNLTH-VPKDLP--PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLD 106 (562)
T ss_dssp ---CCEEECTTSCCCS-CCTTSC--TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEE
T ss_pred cCCCcEEEcCCCCCcc-CCCCCC--CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEE
Confidence 3345899999999884 555443 8999999999999977778899999999999999999977788999999999999
Q ss_pred ccccCCCCCCCccccCCCCccEEEecCCccccc-cccccccCCCccEEEccCCccccccccccccChhhhcCCCCc--cE
Q 040195 141 LYYNNLTGQLPDFVGNLSALQVIYIRGNSLGGK-IPTTLGLLRNLVYLNVNENQFWYVSSFSGSLPFDILVNLPNL--KK 217 (472)
Q Consensus 141 l~~~~i~~~~~~~l~~~~~L~~L~l~~~~~~~~-~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~L--~~ 217 (472)
+++|.++ .+|.. .+++|++|++++|.+++. .+..++.+++|++|++++|.+... . +..+++| +.
T Consensus 107 Ls~N~l~-~lp~~--~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~-------~---~~~l~~L~L~~ 173 (562)
T 3a79_B 107 VSHNRLQ-NISCC--PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQL-------D---LLPVAHLHLSC 173 (562)
T ss_dssp CTTSCCC-EECSC--CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTT-------T---TGGGTTSCEEE
T ss_pred CCCCcCC-ccCcc--ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCccccC-------c---hhhhhhceeeE
Confidence 9999998 56665 899999999999999863 357899999999999999987432 1 2234455 99
Q ss_pred EEcccccc--cccCCccCcC--------------------------CCCCCEEecCCCcc--------------------
Q 040195 218 LCIAENNF--VGSIPDSLSN--------------------------ASNLELLELAGNQF-------------------- 249 (472)
Q Consensus 218 L~l~~~~l--~~~~~~~l~~--------------------------~~~L~~L~l~~~~~-------------------- 249 (472)
|++++|.+ ++..+..+.. +++|+.+++++|..
T Consensus 174 L~L~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~ 253 (562)
T 3a79_B 174 ILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLN 253 (562)
T ss_dssp EEEEESSCCCCSSSCCEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEE
T ss_pred EEeecccccccccCcccccccCcceEEEEecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceE
Confidence 99999988 5555544443 34555666655521
Q ss_pred --------cccccc---cccccCCCCeEEcCCCcCCCCCCCCc-ch-hhhhcccC-------CCcCCc-hhhhc--cccc
Q 040195 250 --------EGKVSI---DFSSLKNLAVLNLERNNLGIGTANDL-GF-VTFLTNCS-------SLKLPH-SIANL--SSTM 306 (472)
Q Consensus 250 --------~~~~~~---~l~~l~~L~~L~l~~~~~~~~~~~~~-~~-~~~~~~~~-------~l~~~~-~~~~~--~~~l 306 (472)
.+.... .....++|++|++++|.+........ .. ...+..+. .+.+|. .+... ..++
T Consensus 254 L~L~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~~~p~~~~~~~~~~~~L 333 (562)
T 3a79_B 254 VTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNI 333 (562)
T ss_dssp EEEEEEEECHHHHHHHHHHHTTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCCSSCHHHHHHHHHTCCC
T ss_pred EEecCCcCcHHHHHHHHHhhhcccccEEEEeccEeeccccchhhhcccccchheehhhcccceeecChhhhhhhhccCcc
Confidence 000000 00112377888888887653211110 00 00011000 112231 11111 2369
Q ss_pred cEEEeecccccCcccccccCccCcceEeccccccccCcchhhcCCCCCcEEEccCCcCccc--cccchhcccccCeeecc
Q 040195 307 THFYIGGNQILGIIHFGIRNLVNLIALGMQSNQLHGTIPDVIGELKNLQILSLFGNFLHGS--IPSSLGNLTKLANLELS 384 (472)
Q Consensus 307 ~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~L~~n~l~~~--~~~~l~~~~~L~~L~l~ 384 (472)
+.++++++.+..... ...+++|++|++++|.+.+..+..+..+++|++|++++|.+++. .+..+..+++|++|+++
T Consensus 334 ~~L~l~~n~~~~~~~--~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~ 411 (562)
T 3a79_B 334 KMLSISDTPFIHMVC--PPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVS 411 (562)
T ss_dssp SEEEEESSCCCCCCC--CSSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECT
T ss_pred eEEEccCCCcccccC--ccCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECC
Confidence 999999998865432 26789999999999999988888999999999999999999863 45678899999999999
Q ss_pred CCcccccCCc-CccCCCCCceEeecCCcccccCChhhhhhcccceEEEcCCCcccccccccccCCCCCceEeccCCeecc
Q 040195 385 SNSLQGNIPL-SVGNCQNLIGFDASHITLTGALPQQLLSITTLSLYLDLSHNLLNGSLLLQVGNLKNLILLDISGNQFSG 463 (472)
Q Consensus 385 ~~~~~~~~~~-~~~~~~~L~~L~ls~~~~~~~~~~~l~~~~~l~~~L~ls~n~l~~~~~~~l~~~~~L~~L~L~~n~~~~ 463 (472)
+|.+++.++. .+..+++|++|++++|.+++..+..+. ++++ .|++++|+++ .+|..+..+++|+.|+|++|.++
T Consensus 412 ~N~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~--~~L~-~L~L~~N~l~-~ip~~~~~l~~L~~L~L~~N~l~- 486 (562)
T 3a79_B 412 LNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLP--PKVK-VLDLHNNRIM-SIPKDVTHLQALQELNVASNQLK- 486 (562)
T ss_dssp TSCCBSCCSSCCCCCCTTCCEEECCSSCCCGGGGSSCC--TTCS-EEECCSSCCC-CCCTTTTSSCCCSEEECCSSCCC-
T ss_pred CCcCCCccChhhhcCcccCCEEECCCCCCCcchhhhhc--CcCC-EEECCCCcCc-ccChhhcCCCCCCEEECCCCCCC-
Confidence 9999974554 578899999999999999866655443 6788 9999999999 56766679999999999999998
Q ss_pred ccCCc-ccc
Q 040195 464 VIPVT-LSI 471 (472)
Q Consensus 464 ~~p~~-~~~ 471 (472)
.+|.. |++
T Consensus 487 ~l~~~~~~~ 495 (562)
T 3a79_B 487 SVPDGVFDR 495 (562)
T ss_dssp CCCTTSTTT
T ss_pred CCCHHHHhc
Confidence 56665 554
No 28
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=100.00 E-value=1.5e-33 Score=289.09 Aligned_cols=422 Identities=20% Similarity=0.157 Sum_probs=294.6
Q ss_pred EEECCCCccCcccCccccCCCCccEEeccCCcCccCcchhhhcCCCCCEEEccCcccCCCCCcccCCCCCCcEEEcccCc
Q 040195 42 ELDLSNQRIGGVLSPYVGNLSFLRYINLSDNGFHGEIPQEIGNLYRLEKLELSNNSFSGTIPTNLSRCSELTHLRVANNK 121 (472)
Q Consensus 42 ~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 121 (472)
+++.++..++.++. .+. +++++|+|++|.++...+.+|.++++|++|+|++|.+....+.+|.++++|++|++++|+
T Consensus 35 ~~~c~~~~l~~vP~-~lp--~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~ 111 (635)
T 4g8a_A 35 TYQCMELNFYKIPD-NLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP 111 (635)
T ss_dssp EEECTTSCCSSCCS-SSC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCC
T ss_pred EEECCCCCcCccCC-CCC--cCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCc
Confidence 56677666655433 222 479999999999998888899999999999999999997777889999999999999999
Q ss_pred CcccCCccccCCCCCcEEEccccCCCCCCCccccCCCCccEEEecCCccccc-cccccccCCCccEEEccCCcccccccc
Q 040195 122 LEGQIPKEIGSLLKLQTLALYYNNLTGQLPDFVGNLSALQVIYIRGNSLGGK-IPTTLGLLRNLVYLNVNENQFWYVSSF 200 (472)
Q Consensus 122 ~~~~~~~~l~~l~~L~~L~l~~~~i~~~~~~~l~~~~~L~~L~l~~~~~~~~-~~~~l~~~~~L~~L~l~~~~l~~~~~~ 200 (472)
++...+..|.++++|++|++++|.+++..+..|+.+++|++|++++|.++.. .+..+..+++|++|++++|.+..+...
T Consensus 112 l~~l~~~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~ 191 (635)
T 4g8a_A 112 IQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCT 191 (635)
T ss_dssp CCEECGGGGTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGG
T ss_pred CCCCCHHHhcCCCCCCEEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccccccccc
Confidence 9966667899999999999999999977677899999999999999998753 467788999999999999988654320
Q ss_pred c---------------------cccChhhhcCCCCccEEEcccccccc-c------------------------------
Q 040195 201 S---------------------GSLPFDILVNLPNLKKLCIAENNFVG-S------------------------------ 228 (472)
Q Consensus 201 ~---------------------~~~~~~~~~~~~~L~~L~l~~~~l~~-~------------------------------ 228 (472)
. ..++...+ ....+..+++.++.... .
T Consensus 192 ~l~~L~~l~~~~~~~~ls~n~l~~i~~~~~-~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~ 270 (635)
T 4g8a_A 192 DLRVLHQMPLLNLSLDLSLNPMNFIQPGAF-KEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKF 270 (635)
T ss_dssp GGHHHHTCTTCCCEEECTTCCCCEECTTTT-TTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCC
T ss_pred cccchhhhhhhhhhhhcccCcccccCcccc-cchhhhhhhhhcccccccccchhhcCCcccccccccccccccccccccc
Confidence 0 00000000 11122333333321100 0
Q ss_pred ---------------------------CCccCcCCCCCCEEecCCCcccccccccccccCCCCeEEcCCCcCCCCCCCCc
Q 040195 229 ---------------------------IPDSLSNASNLELLELAGNQFEGKVSIDFSSLKNLAVLNLERNNLGIGTANDL 281 (472)
Q Consensus 229 ---------------------------~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~ 281 (472)
....+....+++.+.+.++.+.. ...+.....++.|++.++.+.......+
T Consensus 271 ~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~--~~~~~~~~~L~~L~l~~~~~~~~~~~~l 348 (635)
T 4g8a_A 271 DKSALEGLCNLTIEEFRLAYLDYYLDGIIDLFNCLTNVSSFSLVSVTIER--VKDFSYNFGWQHLELVNCKFGQFPTLKL 348 (635)
T ss_dssp CTTTTGGGGGSEEEEEEEECCCSCEEECTTTTGGGTTCSEEEEESCEEEE--CGGGGSCCCCSEEEEESCEESSCCCCBC
T ss_pred cccccccccchhhhhhhhhhhcccccchhhhhhhhccccccccccccccc--ccccccchhhhhhhcccccccCcCcccc
Confidence 00011112233334443333321 1223445667777777776543322211
Q ss_pred chhhhh----------------cccCCCcCC----------chhhhccccccEEEeecccccCcccccccCccCcceEec
Q 040195 282 GFVTFL----------------TNCSSLKLP----------HSIANLSSTMTHFYIGGNQILGIIHFGIRNLVNLIALGM 335 (472)
Q Consensus 282 ~~~~~~----------------~~~~~l~~~----------~~~~~~~~~l~~l~l~~~~~~~~~~~~l~~~~~L~~L~l 335 (472)
.....+ .+++.+.+. ........+++.+++..+..... ...+..+++|+.+++
T Consensus 349 ~~L~~l~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~~-~~~~~~l~~L~~l~l 427 (635)
T 4g8a_A 349 KSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVITM-SSNFLGLEQLEHLDF 427 (635)
T ss_dssp TTCCEEEEESCCSCCBCCCCBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEEE-CSCCTTCTTCCEEEC
T ss_pred hhhhhcccccccCCCCcccccccccccchhhccccccccccccchhhhhhhhhhhccccccccc-cccccccccccchhh
Confidence 111100 000000000 00001112344444444433322 234556777888888
Q ss_pred cccccccCcc-hhhcCCCCCcEEEccCCcCccccccchhcccccCeeeccCCccc-ccCCcCccCCCCCceEeecCCccc
Q 040195 336 QSNQLHGTIP-DVIGELKNLQILSLFGNFLHGSIPSSLGNLTKLANLELSSNSLQ-GNIPLSVGNCQNLIGFDASHITLT 413 (472)
Q Consensus 336 ~~~~i~~~~~-~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~~~~~-~~~~~~~~~~~~L~~L~ls~~~~~ 413 (472)
+++......+ ..+..+++++.++++.|.+....+..+..++.|+.|++++|.+. ...+..+..+++|+.|++++|+++
T Consensus 428 ~~~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~ 507 (635)
T 4g8a_A 428 QHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLE 507 (635)
T ss_dssp TTSEEESTTSSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCC
T ss_pred hhccccccccccccccccccccccccccccccccccccccchhhhhhhhhhcccccccCchhhhhccccCEEECCCCccC
Confidence 7776554433 46778899999999999998888888899999999999999865 346788999999999999999999
Q ss_pred ccCChhhhhhcccceEEEcCCCcccccccccccCCCCCceEeccCCeeccccCCcccc
Q 040195 414 GALPQQLLSITTLSLYLDLSHNLLNGSLLLQVGNLKNLILLDISGNQFSGVIPVTLSI 471 (472)
Q Consensus 414 ~~~~~~l~~~~~l~~~L~ls~n~l~~~~~~~l~~~~~L~~L~L~~n~~~~~~p~~~~~ 471 (472)
+..|..|.++++|+ .|+|++|++++..+..|.++++|++|+|++|++++..|..|.+
T Consensus 508 ~l~~~~f~~l~~L~-~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~ 564 (635)
T 4g8a_A 508 QLSPTAFNSLSSLQ-VLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQH 564 (635)
T ss_dssp EECTTTTTTCTTCC-EEECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTC
T ss_pred CcChHHHcCCCCCC-EEECCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHh
Confidence 77788899999999 9999999999888899999999999999999999999988764
No 29
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=100.00 E-value=3.2e-34 Score=283.44 Aligned_cols=319 Identities=21% Similarity=0.203 Sum_probs=225.8
Q ss_pred EEECCCCccCcccCccccCCCCccEEeccCCcCccCcchhhhcCCCCCEEEccCcccCCCCCcccCCCCCCcEEEcccCc
Q 040195 42 ELDLSNQRIGGVLSPYVGNLSFLRYINLSDNGFHGEIPQEIGNLYRLEKLELSNNSFSGTIPTNLSRCSELTHLRVANNK 121 (472)
Q Consensus 42 ~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 121 (472)
.++.++..+...... + .+++++|++++|.+....+..|.++++|++|++++|.+.+..|..|.++++|++|++++|.
T Consensus 15 ~v~c~~~~l~~ip~~-~--~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~ 91 (477)
T 2id5_A 15 AVLCHRKRFVAVPEG-I--PTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNR 91 (477)
T ss_dssp EEECCSCCCSSCCSC-C--CTTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred EEEeCCCCcCcCCCC-C--CCCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCc
Confidence 566666666544332 2 2577888888888877667778888888888888888776667778888888888888888
Q ss_pred CcccCCccccCCCCCcEEEccccCCCCCCCccccCCCCccEEEecCCccccccccccccCCCccEEEccCCccccccccc
Q 040195 122 LEGQIPKEIGSLLKLQTLALYYNNLTGQLPDFVGNLSALQVIYIRGNSLGGKIPTTLGLLRNLVYLNVNENQFWYVSSFS 201 (472)
Q Consensus 122 ~~~~~~~~l~~l~~L~~L~l~~~~i~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~ 201 (472)
++...+..|.++++|++|++++|.+....+..+..+++|++|++++|.+....+..|..+++|++|++++|.+
T Consensus 92 l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l------- 164 (477)
T 2id5_A 92 LKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNL------- 164 (477)
T ss_dssp CCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCC-------
T ss_pred CCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcC-------
Confidence 8755555677788888888888888766677777888888888888887766667777888888888888876
Q ss_pred cccChhhhcCCCCccEEEcccccccccCCccCcCCCCCCEEecCCCcccccccccccccCCCCeEEcCCCcCCCCCCCCc
Q 040195 202 GSLPFDILVNLPNLKKLCIAENNFVGSIPDSLSNASNLELLELAGNQFEGKVSIDFSSLKNLAVLNLERNNLGIGTANDL 281 (472)
Q Consensus 202 ~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~ 281 (472)
..++...+..+++|+.|++++|.+.+..+..|..+++|+.|++++|...+..+.......+|++|++++|.+..
T Consensus 165 ~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~------ 238 (477)
T 2id5_A 165 TSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTA------ 238 (477)
T ss_dssp SSCCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCS------
T ss_pred cccChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccc------
Confidence 34455666777888888888888777666677778888888888776654544444445577777777776642
Q ss_pred chhhhhcccCCCcCCchhhhccccccEEEeecccccCcccccccCccCcceEeccccccccCcchhhcCCCCCcEEEccC
Q 040195 282 GFVTFLTNCSSLKLPHSIANLSSTMTHFYIGGNQILGIIHFGIRNLVNLIALGMQSNQLHGTIPDVIGELKNLQILSLFG 361 (472)
Q Consensus 282 ~~~~~~~~~~~l~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~L~~ 361 (472)
++.......++|+.|++++|.++...+..|..+++|+.|++++|.+.+..+..|..+++|++|++++
T Consensus 239 -------------~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 305 (477)
T 2id5_A 239 -------------VPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSG 305 (477)
T ss_dssp -------------CCHHHHTTCTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCS
T ss_pred -------------cCHHHhcCccccCeeECCCCcCCccChhhccccccCCEEECCCCccceECHHHhcCcccCCEEECCC
Confidence 2222222223666677776666666666666777777777777777766666677777777777777
Q ss_pred CcCccccccchhcccccCeeeccCCccc
Q 040195 362 NFLHGSIPSSLGNLTKLANLELSSNSLQ 389 (472)
Q Consensus 362 n~l~~~~~~~l~~~~~L~~L~l~~~~~~ 389 (472)
|.+++..+..|..+++|++|++++|++.
T Consensus 306 N~l~~~~~~~~~~l~~L~~L~l~~N~l~ 333 (477)
T 2id5_A 306 NQLTTLEESVFHSVGNLETLILDSNPLA 333 (477)
T ss_dssp SCCSCCCGGGBSCGGGCCEEECCSSCEE
T ss_pred CcCceeCHhHcCCCcccCEEEccCCCcc
Confidence 7776555556666777777777777665
No 30
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=100.00 E-value=3.9e-34 Score=282.85 Aligned_cols=321 Identities=22% Similarity=0.192 Sum_probs=245.4
Q ss_pred CEEEccCcccCCCCCcccCCCCCCcEEEcccCcCcccCCccccCCCCCcEEEccccCCCCCCCccccCCCCccEEEecCC
Q 040195 89 EKLELSNNSFSGTIPTNLSRCSELTHLRVANNKLEGQIPKEIGSLLKLQTLALYYNNLTGQLPDFVGNLSALQVIYIRGN 168 (472)
Q Consensus 89 ~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~i~~~~~~~l~~~~~L~~L~l~~~ 168 (472)
+.++.++..+. .+|..+ .+.+++|++++|.++...+..|.++++|++|++++|.+.+..+..|..+++|++|++++|
T Consensus 14 ~~v~c~~~~l~-~ip~~~--~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n 90 (477)
T 2id5_A 14 RAVLCHRKRFV-AVPEGI--PTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSN 90 (477)
T ss_dssp TEEECCSCCCS-SCCSCC--CTTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred CEEEeCCCCcC-cCCCCC--CCCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCC
Confidence 57888887776 556554 368999999999998777788999999999999999998777888899999999999999
Q ss_pred ccccccccccccCCCccEEEccCCccccccccccccChhhhcCCCCccEEEcccccccccCCccCcCCCCCCEEecCCCc
Q 040195 169 SLGGKIPTTLGLLRNLVYLNVNENQFWYVSSFSGSLPFDILVNLPNLKKLCIAENNFVGSIPDSLSNASNLELLELAGNQ 248 (472)
Q Consensus 169 ~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~ 248 (472)
.++...+..|..+++|++|++++|.+. .++...+..+++|++|++++|.+....+..|..+++|++|++++|.
T Consensus 91 ~l~~~~~~~~~~l~~L~~L~Ls~n~i~-------~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 163 (477)
T 2id5_A 91 RLKLIPLGVFTGLSNLTKLDISENKIV-------ILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCN 163 (477)
T ss_dssp CCCSCCTTSSTTCTTCCEEECTTSCCC-------EECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCC
T ss_pred cCCccCcccccCCCCCCEEECCCCccc-------cCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCc
Confidence 988665567788999999999999873 3334556788899999999998887777788888999999999988
Q ss_pred ccccccccccccCCCCeEEcCCCcCCCCCCCCcchhhhhcccCCCcCCchhhhccccccEEEeecccccCcccccccCcc
Q 040195 249 FEGKVSIDFSSLKNLAVLNLERNNLGIGTANDLGFVTFLTNCSSLKLPHSIANLSSTMTHFYIGGNQILGIIHFGIRNLV 328 (472)
Q Consensus 249 ~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~l~~~~ 328 (472)
++......+..+++|+.|++++|.+...... .....++++.|+++++......+.......
T Consensus 164 l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~-------------------~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~ 224 (477)
T 2id5_A 164 LTSIPTEALSHLHGLIVLRLRHLNINAIRDY-------------------SFKRLYRLKVLEISHWPYLDTMTPNCLYGL 224 (477)
T ss_dssp CSSCCHHHHTTCTTCCEEEEESCCCCEECTT-------------------CSCSCTTCCEEEEECCTTCCEECTTTTTTC
T ss_pred CcccChhHhcccCCCcEEeCCCCcCcEeChh-------------------hcccCcccceeeCCCCccccccCcccccCc
Confidence 8866666788888888888888877532111 111123677888887766655555455556
Q ss_pred CcceEeccccccccCcchhhcCCCCCcEEEccCCcCccccccchhcccccCeeeccCCcccccCCcCccCCCCCceEeec
Q 040195 329 NLIALGMQSNQLHGTIPDVIGELKNLQILSLFGNFLHGSIPSSLGNLTKLANLELSSNSLQGNIPLSVGNCQNLIGFDAS 408 (472)
Q Consensus 329 ~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ls 408 (472)
+|++|++++|.+....+..+..+++|++|++++|.+.+..+..+..+++|++|++++|++++..+..+..+++|+.|+++
T Consensus 225 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 304 (477)
T 2id5_A 225 NLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVS 304 (477)
T ss_dssp CCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECC
T ss_pred cccEEECcCCcccccCHHHhcCccccCeeECCCCcCCccChhhccccccCCEEECCCCccceECHHHhcCcccCCEEECC
Confidence 78888888887775555567777888888888888776666677777888888888888777667777778888888888
Q ss_pred CCcccccCChhhhhhcccceEEEcCCCcccc
Q 040195 409 HITLTGALPQQLLSITTLSLYLDLSHNLLNG 439 (472)
Q Consensus 409 ~~~~~~~~~~~l~~~~~l~~~L~ls~n~l~~ 439 (472)
+|.+++..+..+..+++|+ .|++++|++..
T Consensus 305 ~N~l~~~~~~~~~~l~~L~-~L~l~~N~l~c 334 (477)
T 2id5_A 305 GNQLTTLEESVFHSVGNLE-TLILDSNPLAC 334 (477)
T ss_dssp SSCCSCCCGGGBSCGGGCC-EEECCSSCEEC
T ss_pred CCcCceeCHhHcCCCcccC-EEEccCCCccC
Confidence 8877744444566677777 78888887763
No 31
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=100.00 E-value=2.4e-33 Score=273.75 Aligned_cols=348 Identities=17% Similarity=0.163 Sum_probs=244.7
Q ss_pred CCCceEEEECCCCccCcccCccccCCCCccEEeccCCcCccCcchhhhcCCCCCEEEccCcccCCCCCcccCCCCCCcEE
Q 040195 36 RHQRVTELDLSNQRIGGVLSPYVGNLSFLRYINLSDNGFHGEIPQEIGNLYRLEKLELSNNSFSGTIPTNLSRCSELTHL 115 (472)
Q Consensus 36 ~~~~l~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L 115 (472)
..+++++|+++++.+.+.. .+..+++|++|++++|.+.+. + +..+++|++|++++|.+.+. + +.++++|++|
T Consensus 40 ~l~~L~~L~Ls~n~l~~~~--~l~~l~~L~~L~Ls~n~l~~~-~--~~~l~~L~~L~Ls~N~l~~~-~--~~~l~~L~~L 111 (457)
T 3bz5_A 40 QLATLTSLDCHNSSITDMT--GIEKLTGLTKLICTSNNITTL-D--LSQNTNLTYLACDSNKLTNL-D--VTPLTKLTYL 111 (457)
T ss_dssp HHTTCCEEECCSSCCCCCT--TGGGCTTCSEEECCSSCCSCC-C--CTTCTTCSEEECCSSCCSCC-C--CTTCTTCCEE
T ss_pred HcCCCCEEEccCCCcccCh--hhcccCCCCEEEccCCcCCeE-c--cccCCCCCEEECcCCCCcee-e--cCCCCcCCEE
Confidence 3478889999998887652 688889999999999888754 3 78888999999999888753 3 7888899999
Q ss_pred EcccCcCcccCCccccCCCCCcEEEccccCCCCCCCccccCCCCccEEEecCCccccccccccccCCCccEEEccCCccc
Q 040195 116 RVANNKLEGQIPKEIGSLLKLQTLALYYNNLTGQLPDFVGNLSALQVIYIRGNSLGGKIPTTLGLLRNLVYLNVNENQFW 195 (472)
Q Consensus 116 ~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~i~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~ 195 (472)
++++|.++. .+ +..+++|++|++++|.+++. + +..+++|++|++++|...+.. .+..+++|++|++++|.+.
T Consensus 112 ~L~~N~l~~-l~--~~~l~~L~~L~l~~N~l~~l-~--l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~ 183 (457)
T 3bz5_A 112 NCDTNKLTK-LD--VSQNPLLTYLNCARNTLTEI-D--VSHNTQLTELDCHLNKKITKL--DVTPQTQLTTLDCSFNKIT 183 (457)
T ss_dssp ECCSSCCSC-CC--CTTCTTCCEEECTTSCCSCC-C--CTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEEECCSSCCC
T ss_pred ECCCCcCCe-ec--CCCCCcCCEEECCCCcccee-c--cccCCcCCEEECCCCCccccc--ccccCCcCCEEECCCCccc
Confidence 999998874 33 78888999999999888753 2 678888999999888544333 4677888999999988874
Q ss_pred cccccccccChhhhcCCCCccEEEcccccccccCCccCcCCCCCCEEecCCCcccccccccccccCCCCeEEcCCCcCCC
Q 040195 196 YVSSFSGSLPFDILVNLPNLKKLCIAENNFVGSIPDSLSNASNLELLELAGNQFEGKVSIDFSSLKNLAVLNLERNNLGI 275 (472)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~ 275 (472)
.+ + +..+++|+.|++++|.+++. .++.+++|+.|++++|++++. + +..+++|+.|++++|++..
T Consensus 184 ~l-------~---l~~l~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~~i-p--~~~l~~L~~L~l~~N~l~~ 247 (457)
T 3bz5_A 184 EL-------D---VSQNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTEI-D--VTPLTQLTYFDCSVNPLTE 247 (457)
T ss_dssp CC-------C---CTTCTTCCEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSCC-C--CTTCTTCSEEECCSSCCSC
T ss_pred ee-------c---cccCCCCCEEECcCCcCCee---ccccCCCCCEEECcCCccccc-C--ccccCCCCEEEeeCCcCCC
Confidence 43 2 44678889999998888764 377888899999999888763 2 7788889999998888764
Q ss_pred CCCCCcchhhhhcccCCCcCCchhhhccccccEEEeecccccCcccccccCccCcceEeccccccccCcchhhcCCCCCc
Q 040195 276 GTANDLGFVTFLTNCSSLKLPHSIANLSSTMTHFYIGGNQILGIIHFGIRNLVNLIALGMQSNQLHGTIPDVIGELKNLQ 355 (472)
Q Consensus 276 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~ 355 (472)
..... .++++.++++.+ +|+.+++++|.+.+.+| ++.+++|+
T Consensus 248 ~~~~~----------------------l~~L~~L~l~~n--------------~L~~L~l~~n~~~~~~~--~~~l~~L~ 289 (457)
T 3bz5_A 248 LDVST----------------------LSKLTTLHCIQT--------------DLLEIDLTHNTQLIYFQ--AEGCRKIK 289 (457)
T ss_dssp CCCTT----------------------CTTCCEEECTTC--------------CCSCCCCTTCTTCCEEE--CTTCTTCC
T ss_pred cCHHH----------------------CCCCCEEeccCC--------------CCCEEECCCCccCCccc--ccccccCC
Confidence 32111 113444443322 33444444444333333 23445555
Q ss_pred EEEccCCcCcccccc--------chhcccccCeeeccCCcccccCCcCccCCCCCceEeecCCcccccCChhhhhhcccc
Q 040195 356 ILSLFGNFLHGSIPS--------SLGNLTKLANLELSSNSLQGNIPLSVGNCQNLIGFDASHITLTGALPQQLLSITTLS 427 (472)
Q Consensus 356 ~L~L~~n~l~~~~~~--------~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ls~~~~~~~~~~~l~~~~~l~ 427 (472)
.|++++|...+.++. .+..+++|++|++++|++++ + .+..+++|+.|++++|++.+ + +.+.
T Consensus 290 ~L~Ls~n~~l~~l~~~~~~L~~L~l~~~~~L~~L~L~~N~l~~-l--~l~~l~~L~~L~l~~N~l~~-l-------~~L~ 358 (457)
T 3bz5_A 290 ELDVTHNTQLYLLDCQAAGITELDLSQNPKLVYLYLNNTELTE-L--DVSHNTKLKSLSCVNAHIQD-F-------SSVG 358 (457)
T ss_dssp CCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEECTTCCCSC-C--CCTTCTTCSEEECCSSCCCB-C-------TTGG
T ss_pred EEECCCCcccceeccCCCcceEechhhcccCCEEECCCCcccc-c--ccccCCcCcEEECCCCCCCC-c-------cccc
Confidence 555555543322221 13445778888888888885 3 37778888888888888874 2 3344
Q ss_pred eEEEcCCCcccccccccccCCCCCceEeccCCeeccccCCccc
Q 040195 428 LYLDLSHNLLNGSLLLQVGNLKNLILLDISGNQFSGVIPVTLS 470 (472)
Q Consensus 428 ~~L~ls~n~l~~~~~~~l~~~~~L~~L~L~~n~~~~~~p~~~~ 470 (472)
.|++++|.+.+. .++..|+.+++++|.+++.+|..+.
T Consensus 359 -~L~l~~n~l~g~-----~~~~~l~~l~l~~N~l~g~ip~~~~ 395 (457)
T 3bz5_A 359 -KIPALNNNFEAE-----GQTITMPKETLTNNSLTIAVSPDLL 395 (457)
T ss_dssp -GSSGGGTSEEEE-----EEEEECCCBCCBTTBEEEECCTTCB
T ss_pred -cccccCCcEEec-----ceeeecCccccccCcEEEEcChhHh
Confidence 567777777654 3455778888888888888887653
No 32
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=100.00 E-value=7.8e-33 Score=272.30 Aligned_cols=346 Identities=24% Similarity=0.340 Sum_probs=291.3
Q ss_pred CCCCccEEeccCCcCccCcchhhhcCCCCCEEEccCcccCCCCCcccCCCCCCcEEEcccCcCcccCCccccCCCCCcEE
Q 040195 60 NLSFLRYINLSDNGFHGEIPQEIGNLYRLEKLELSNNSFSGTIPTNLSRCSELTHLRVANNKLEGQIPKEIGSLLKLQTL 139 (472)
Q Consensus 60 ~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L 139 (472)
.+++++.|++.++.+.. .+ .+..+++|++|++++|.+.+.. . +..+++|++|++++|.+... +. +.++++|++|
T Consensus 44 ~l~~l~~L~l~~~~i~~-l~-~~~~l~~L~~L~Ls~n~l~~~~-~-~~~l~~L~~L~l~~n~l~~~-~~-~~~l~~L~~L 117 (466)
T 1o6v_A 44 DLDQVTTLQADRLGIKS-ID-GVEYLNNLTQINFSNNQLTDIT-P-LKNLTKLVDILMNNNQIADI-TP-LANLTNLTGL 117 (466)
T ss_dssp HHHTCCEEECCSSCCCC-CT-TGGGCTTCCEEECCSSCCCCCG-G-GTTCTTCCEEECCSSCCCCC-GG-GTTCTTCCEE
T ss_pred HhccccEEecCCCCCcc-Cc-chhhhcCCCEEECCCCccCCch-h-hhccccCCEEECCCCccccC-hh-hcCCCCCCEE
Confidence 46789999999998874 34 4888999999999999998543 3 89999999999999999844 33 8999999999
Q ss_pred EccccCCCCCCCccccCCCCccEEEecCCccccccccccccCCCccEEEccCCccccccccccccChhhhcCCCCccEEE
Q 040195 140 ALYYNNLTGQLPDFVGNLSALQVIYIRGNSLGGKIPTTLGLLRNLVYLNVNENQFWYVSSFSGSLPFDILVNLPNLKKLC 219 (472)
Q Consensus 140 ~l~~~~i~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~L~~L~ 219 (472)
++++|.+.+. +. +..+++|++|++++|.+.+. ..+..+++|++|++.+ .+.. . ..+..+++|+.|+
T Consensus 118 ~L~~n~l~~~-~~-~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~l~~-~~~~-------~--~~~~~l~~L~~L~ 183 (466)
T 1o6v_A 118 TLFNNQITDI-DP-LKNLTNLNRLELSSNTISDI--SALSGLTSLQQLSFGN-QVTD-------L--KPLANLTTLERLD 183 (466)
T ss_dssp ECCSSCCCCC-GG-GTTCTTCSEEEEEEEEECCC--GGGTTCTTCSEEEEEE-SCCC-------C--GGGTTCTTCCEEE
T ss_pred ECCCCCCCCC-hH-HcCCCCCCEEECCCCccCCC--hhhccCCcccEeecCC-cccC-------c--hhhccCCCCCEEE
Confidence 9999999854 33 88999999999999998742 3588999999999964 3221 1 1266889999999
Q ss_pred cccccccccCCccCcCCCCCCEEecCCCcccccccccccccCCCCeEEcCCCcCCCCCCCCcchhhhhcccCCCcCCchh
Q 040195 220 IAENNFVGSIPDSLSNASNLELLELAGNQFEGKVSIDFSSLKNLAVLNLERNNLGIGTANDLGFVTFLTNCSSLKLPHSI 299 (472)
Q Consensus 220 l~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 299 (472)
+++|.+... ..+..+++|++|++++|.+.+..+ +..+++|+.|++++|.+... ..+
T Consensus 184 l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--------------------~~l 239 (466)
T 1o6v_A 184 ISSNKVSDI--SVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDI--------------------GTL 239 (466)
T ss_dssp CCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCC--------------------GGG
T ss_pred CcCCcCCCC--hhhccCCCCCEEEecCCccccccc--ccccCCCCEEECCCCCcccc--------------------hhh
Confidence 999998754 348899999999999999876543 77899999999999988632 011
Q ss_pred hhccccccEEEeecccccCcccccccCccCcceEeccccccccCcchhhcCCCCCcEEEccCCcCccccccchhcccccC
Q 040195 300 ANLSSTMTHFYIGGNQILGIIHFGIRNLVNLIALGMQSNQLHGTIPDVIGELKNLQILSLFGNFLHGSIPSSLGNLTKLA 379 (472)
Q Consensus 300 ~~~~~~l~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~L~ 379 (472)
...++++.|++++|.+....+ +..+++|++|++++|.+.+..+ +..+++|++|++++|.+.+..+ +..+++|+
T Consensus 240 -~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~ 312 (466)
T 1o6v_A 240 -ASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP--ISNLKNLT 312 (466)
T ss_dssp -GGCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCSCCGG--GGGCTTCS
T ss_pred -hcCCCCCEEECCCCccccchh--hhcCCCCCEEECCCCccCcccc--ccCCCccCeEEcCCCcccCchh--hcCCCCCC
Confidence 122489999999999987654 8899999999999999986544 7889999999999999986543 78899999
Q ss_pred eeeccCCcccccCCcCccCCCCCceEeecCCcccccCChhhhhhcccceEEEcCCCcccccccccccCCCCCceEeccCC
Q 040195 380 NLELSSNSLQGNIPLSVGNCQNLIGFDASHITLTGALPQQLLSITTLSLYLDLSHNLLNGSLLLQVGNLKNLILLDISGN 459 (472)
Q Consensus 380 ~L~l~~~~~~~~~~~~~~~~~~L~~L~ls~~~~~~~~~~~l~~~~~l~~~L~ls~n~l~~~~~~~l~~~~~L~~L~L~~n 459 (472)
+|++++|++++..+ +..+++|+.|++++|.+.+ . ..+..+++++ .|++++|++++..| +..+++|+.|++++|
T Consensus 313 ~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~-~-~~l~~l~~L~-~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n 385 (466)
T 1o6v_A 313 YLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSD-V-SSLANLTNIN-WLSAGHNQISDLTP--LANLTRITQLGLNDQ 385 (466)
T ss_dssp EEECCSSCCSCCGG--GGGCTTCCEEECCSSCCCC-C-GGGTTCTTCC-EEECCSSCCCBCGG--GTTCTTCCEEECCCE
T ss_pred EEECcCCcCCCchh--hccCccCCEeECCCCccCC-c-hhhccCCCCC-EEeCCCCccCccch--hhcCCCCCEEeccCC
Confidence 99999999996554 7899999999999999984 3 5788999999 99999999998776 899999999999999
Q ss_pred eecc
Q 040195 460 QFSG 463 (472)
Q Consensus 460 ~~~~ 463 (472)
++++
T Consensus 386 ~~~~ 389 (466)
T 1o6v_A 386 AWTN 389 (466)
T ss_dssp EEEC
T ss_pred cccC
Confidence 9986
No 33
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=100.00 E-value=5.6e-33 Score=281.42 Aligned_cols=347 Identities=17% Similarity=0.142 Sum_probs=212.2
Q ss_pred CCCCCCCCCCccc----ccceeeCCCCCceEEEECCCCccCcccCccccCCCCccEEeccCCcCccCcchhhhcCCCCCE
Q 040195 15 VTSSWNNTINLCQ----WMGVTCGHRHQRVTELDLSNQRIGGVLSPYVGNLSFLRYINLSDNGFHGEIPQEIGNLYRLEK 90 (472)
Q Consensus 15 ~~~~~~~~~~~~~----~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~ 90 (472)
.++.|.....||. |..+.+. ..++......... ..-..+.+++.++++++.+....+..+..+++|++
T Consensus 8 ~l~~~~~~~~C~~~~~~~~c~~~~------~~i~~~~~~~~~~--~~~l~l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~ 79 (597)
T 3oja_B 8 NVKPRQPEYKCIDSNLQYDCVFYD------VHIDMQTQDVYFG--FEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVEL 79 (597)
T ss_dssp ---CCCSEECCCCC--CCSEEECS------CEECSSCCCCEES--CSSGGGCCCSEEEESSCEESEECTHHHHHCCCCSE
T ss_pred cccCCCCCCcCcccCcCceeEecC------ceecccccccccC--cccccCCCceEEEeeCCCCCCcCHHHHccCCCCcE
Confidence 5688988888885 4433332 1122111111111 11124678899999999888776777889999999
Q ss_pred EEccCcccCCCCCcccCCCCCCcEEEcccCcCcccCCccccCCCCCcEEEccccCCCCCCCccccCCCCccEEEecCCcc
Q 040195 91 LELSNNSFSGTIPTNLSRCSELTHLRVANNKLEGQIPKEIGSLLKLQTLALYYNNLTGQLPDFVGNLSALQVIYIRGNSL 170 (472)
Q Consensus 91 L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~i~~~~~~~l~~~~~L~~L~l~~~~~ 170 (472)
|++++|.+.+..+..|..+++|++|++++|.+++..+..|+.+++|++|++++|.+....+..+..+++|++|++++|.+
T Consensus 80 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l 159 (597)
T 3oja_B 80 LNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNL 159 (597)
T ss_dssp EECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred EECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCCCCCHHHhccCCCCCEEEeeCCcC
Confidence 99999999877777899999999999999999877777788999999999999998855555568889999999999988
Q ss_pred ccccccccccCCCccEEEccCCccccccccccccChhhhcCCCCccEEEcccccccccCCccCcCCCCCCEEecCCCccc
Q 040195 171 GGKIPTTLGLLRNLVYLNVNENQFWYVSSFSGSLPFDILVNLPNLKKLCIAENNFVGSIPDSLSNASNLELLELAGNQFE 250 (472)
Q Consensus 171 ~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~ 250 (472)
++..+..+..+++|++|++++|.+..++ +..+++|+.|++++|.+.+ +...++|+.|++++|.+.
T Consensus 160 ~~~~~~~~~~l~~L~~L~L~~N~l~~~~----------~~~l~~L~~L~l~~n~l~~-----l~~~~~L~~L~ls~n~l~ 224 (597)
T 3oja_B 160 ERIEDDTFQATTSLQNLQLSSNRLTHVD----------LSLIPSLFHANVSYNLLST-----LAIPIAVEELDASHNSIN 224 (597)
T ss_dssp CBCCTTTTTTCTTCCEEECTTSCCSBCC----------GGGCTTCSEEECCSSCCSE-----EECCTTCSEEECCSSCCC
T ss_pred CCCChhhhhcCCcCcEEECcCCCCCCcC----------hhhhhhhhhhhcccCcccc-----ccCCchhheeeccCCccc
Confidence 8777777888888888888888763321 2234556666666555442 122334455555444443
Q ss_pred ccccccccccCCCCeEEcCCCcCCCCCCCCcchhhhhcccCCCcCCchhhhccccccEEEeecccccCcccccccCccCc
Q 040195 251 GKVSIDFSSLKNLAVLNLERNNLGIGTANDLGFVTFLTNCSSLKLPHSIANLSSTMTHFYIGGNQILGIIHFGIRNLVNL 330 (472)
Q Consensus 251 ~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~l~~~~~L 330 (472)
..... ..+ +++.|++++|.++.. ..+..+++|
T Consensus 225 ~~~~~---~~~-------------------------------------------~L~~L~L~~n~l~~~--~~l~~l~~L 256 (597)
T 3oja_B 225 VVRGP---VNV-------------------------------------------ELTILKLQHNNLTDT--AWLLNYPGL 256 (597)
T ss_dssp EEECS---CCS-------------------------------------------CCCEEECCSSCCCCC--GGGGGCTTC
T ss_pred ccccc---cCC-------------------------------------------CCCEEECCCCCCCCC--hhhccCCCC
Confidence 21111 012 233333333333321 234455566
Q ss_pred ceEeccccccccCcchhhcCCCCCcEEEccCCcCccccccchhcccccCeeeccCCcccccCCcCccCCCCCceEeecCC
Q 040195 331 IALGMQSNQLHGTIPDVIGELKNLQILSLFGNFLHGSIPSSLGNLTKLANLELSSNSLQGNIPLSVGNCQNLIGFDASHI 410 (472)
Q Consensus 331 ~~L~l~~~~i~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ls~~ 410 (472)
+.|++++|.+.+..|..|..+++|++|++++|.+.+ ++..+..+++|+.|++++|.++ .+|..+..+++|+.|++++|
T Consensus 257 ~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~l~~L~~L~L~~N 334 (597)
T 3oja_B 257 VEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHN 334 (597)
T ss_dssp SEEECCSSCCCEEESGGGTTCSSCCEEECTTSCCCE-EECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSS
T ss_pred CEEECCCCccCCCCHHHhcCccCCCEEECCCCCCCC-CCcccccCCCCcEEECCCCCCC-ccCcccccCCCCCEEECCCC
Confidence 666666666655555555566666666666665553 3333444555555555555555 34444455555555555555
Q ss_pred cccccCChhhhhhcccceEEEcCCCccc
Q 040195 411 TLTGALPQQLLSITTLSLYLDLSHNLLN 438 (472)
Q Consensus 411 ~~~~~~~~~l~~~~~l~~~L~ls~n~l~ 438 (472)
.+.+ ++ +..++.|+ .|++++|++.
T Consensus 335 ~l~~-~~--~~~~~~L~-~L~l~~N~~~ 358 (597)
T 3oja_B 335 SIVT-LK--LSTHHTLK-NLTLSHNDWD 358 (597)
T ss_dssp CCCC-CC--CCTTCCCS-EEECCSSCEE
T ss_pred CCCC-cC--hhhcCCCC-EEEeeCCCCC
Confidence 5542 22 33344455 5555555554
No 34
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=100.00 E-value=1.3e-33 Score=275.34 Aligned_cols=375 Identities=21% Similarity=0.222 Sum_probs=193.2
Q ss_pred CceEEEECCCCccCcccCccccCCCCccEEeccCCcCccCcchhhhcCCC-------------CCEEEccCcccCCCCCc
Q 040195 38 QRVTELDLSNQRIGGVLSPYVGNLSFLRYINLSDNGFHGEIPQEIGNLYR-------------LEKLELSNNSFSGTIPT 104 (472)
Q Consensus 38 ~~l~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~l~~-------------L~~L~L~~~~~~~~~~~ 104 (472)
.++++++++++.+ +..+..++++++|++|++++|.+.+..|..+.++.+ +++|++++|.+.+ +|.
T Consensus 11 ~~L~~L~l~~n~l-~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~l~~-lp~ 88 (454)
T 1jl5_A 11 TFLQEPLRHSSNL-TEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLSS-LPE 88 (454)
T ss_dssp ------------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSCCSC-CCS
T ss_pred ccchhhhcccCch-hhCChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEEEecCCcccc-CCC
Confidence 5677777777777 455666777777777777777766666666665554 3677777766652 333
Q ss_pred ccCCCCCCcEEEcccCcCcccCCccccCCCCCcEEEccccCCCCCCCccccCCCCccEEEecCCccccccccccccCCCc
Q 040195 105 NLSRCSELTHLRVANNKLEGQIPKEIGSLLKLQTLALYYNNLTGQLPDFVGNLSALQVIYIRGNSLGGKIPTTLGLLRNL 184 (472)
Q Consensus 105 ~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~i~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L 184 (472)
. .++|++|++++|.+++ +|.. .++|++|++++|.+.+ ++.. .++|++|++++|.+++ .+ .++.+++|
T Consensus 89 ~---~~~L~~L~l~~n~l~~-lp~~---~~~L~~L~l~~n~l~~-l~~~---~~~L~~L~L~~n~l~~-lp-~~~~l~~L 155 (454)
T 1jl5_A 89 L---PPHLESLVASCNSLTE-LPEL---PQSLKSLLVDNNNLKA-LSDL---PPLLEYLGVSNNQLEK-LP-ELQNSSFL 155 (454)
T ss_dssp C---CTTCSEEECCSSCCSS-CCCC---CTTCCEEECCSSCCSC-CCSC---CTTCCEEECCSSCCSS-CC-CCTTCTTC
T ss_pred C---cCCCCEEEccCCcCCc-cccc---cCCCcEEECCCCccCc-ccCC---CCCCCEEECcCCCCCC-Cc-ccCCCCCC
Confidence 1 3566666666666663 3332 2556666666665552 2211 1456666666666553 33 35566666
Q ss_pred cEEEccCCccccccccccccChhhhcCCCCccEEEcccccccccCCccCcCCCCCCEEecCCCcccccccccccccCCCC
Q 040195 185 VYLNVNENQFWYVSSFSGSLPFDILVNLPNLKKLCIAENNFVGSIPDSLSNASNLELLELAGNQFEGKVSIDFSSLKNLA 264 (472)
Q Consensus 185 ~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~ 264 (472)
++|++++|.+..++. ..++|++|++++|.+++ ++ .++++++|+.|++++|.+++. +. ..++|+
T Consensus 156 ~~L~l~~N~l~~lp~-----------~~~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l~~N~l~~l-~~---~~~~L~ 218 (454)
T 1jl5_A 156 KIIDVDNNSLKKLPD-----------LPPSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYADNNSLKKL-PD---LPLSLE 218 (454)
T ss_dssp CEEECCSSCCSCCCC-----------CCTTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSSC-CC---CCTTCC
T ss_pred CEEECCCCcCcccCC-----------CcccccEEECcCCcCCc-Cc-cccCCCCCCEEECCCCcCCcC-CC---CcCccc
Confidence 666666665533221 11355555555555553 23 355555555555555555421 11 113455
Q ss_pred eEEcCCCcCCCCCCCCcchhhhhcccCCCcCCc----hhhhccccccEEEeecccccCcccccccCccCcceEecccccc
Q 040195 265 VLNLERNNLGIGTANDLGFVTFLTNCSSLKLPH----SIANLSSTMTHFYIGGNQILGIIHFGIRNLVNLIALGMQSNQL 340 (472)
Q Consensus 265 ~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~----~~~~~~~~l~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~i 340 (472)
+|++++|.+.... .+. .+.+++.+.+.. .+....++++.|++++|.++.+.. ..++|++|++++|.+
T Consensus 219 ~L~l~~n~l~~lp--~~~---~l~~L~~L~l~~N~l~~l~~~~~~L~~L~l~~N~l~~l~~----~~~~L~~L~ls~N~l 289 (454)
T 1jl5_A 219 SIVAGNNILEELP--ELQ---NLPFLTTIYADNNLLKTLPDLPPSLEALNVRDNYLTDLPE----LPQSLTFLDVSENIF 289 (454)
T ss_dssp EEECCSSCCSSCC--CCT---TCTTCCEEECCSSCCSSCCSCCTTCCEEECCSSCCSCCCC----CCTTCCEEECCSSCC
T ss_pred EEECcCCcCCccc--ccC---CCCCCCEEECCCCcCCcccccccccCEEECCCCcccccCc----ccCcCCEEECcCCcc
Confidence 5555555443111 010 111111111000 001122478888888888776432 237788888888888
Q ss_pred ccCcchhhcCCCCCcEEEccCCcCccccccchhcc-cccCeeeccCCcccccCCcCccCCCCCceEeecCCcccccCChh
Q 040195 341 HGTIPDVIGELKNLQILSLFGNFLHGSIPSSLGNL-TKLANLELSSNSLQGNIPLSVGNCQNLIGFDASHITLTGALPQQ 419 (472)
Q Consensus 341 ~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~-~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ls~~~~~~~~~~~ 419 (472)
.+. +. ..++|++|++++|.+.+ ++ .+ ++|++|++++|++++ +|.. +++|++|++++|.++ .+|.
T Consensus 290 ~~l-~~---~~~~L~~L~l~~N~l~~-i~----~~~~~L~~L~Ls~N~l~~-lp~~---~~~L~~L~L~~N~l~-~lp~- 354 (454)
T 1jl5_A 290 SGL-SE---LPPNLYYLNASSNEIRS-LC----DLPPSLEELNVSNNKLIE-LPAL---PPRLERLIASFNHLA-EVPE- 354 (454)
T ss_dssp SEE-SC---CCTTCCEEECCSSCCSE-EC----CCCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCS-CCCC-
T ss_pred Ccc-cC---cCCcCCEEECcCCcCCc-cc----CCcCcCCEEECCCCcccc-cccc---CCcCCEEECCCCccc-cccc-
Confidence 752 21 12688888888888874 22 23 589999999999884 5543 689999999999998 5776
Q ss_pred hhhhcccceEEEcCCCcccc--cccccccCC-------------CCCceEeccCCeecc--ccCCcccc
Q 040195 420 LLSITTLSLYLDLSHNLLNG--SLLLQVGNL-------------KNLILLDISGNQFSG--VIPVTLSI 471 (472)
Q Consensus 420 l~~~~~l~~~L~ls~n~l~~--~~~~~l~~~-------------~~L~~L~L~~n~~~~--~~p~~~~~ 471 (472)
.+++++ .|++++|++++ .+|..+..+ ++|+.|++++|++++ .+|..+.+
T Consensus 355 --~l~~L~-~L~L~~N~l~~l~~ip~~l~~L~~n~~~~~i~~~~~~L~~L~ls~N~l~~~~~iP~sl~~ 420 (454)
T 1jl5_A 355 --LPQNLK-QLHVEYNPLREFPDIPESVEDLRMNSHLAEVPELPQNLKQLHVETNPLREFPDIPESVED 420 (454)
T ss_dssp --CCTTCC-EEECCSSCCSSCCCCCTTCCEEECCC----------------------------------
T ss_pred --hhhhcc-EEECCCCCCCcCCCChHHHHhhhhcccccccccccCcCCEEECCCCcCCccccchhhHhh
Confidence 467888 99999999998 677777777 889999999999987 78877654
No 35
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=100.00 E-value=6.8e-32 Score=255.55 Aligned_cols=308 Identities=23% Similarity=0.314 Sum_probs=216.1
Q ss_pred hhhcCCCCCEEEccCcccCCCCCcccCCCCCCcEEEcccCcCcccCCccccCCCCCcEEEccccCCCCCCCccccCCCCc
Q 040195 81 EIGNLYRLEKLELSNNSFSGTIPTNLSRCSELTHLRVANNKLEGQIPKEIGSLLKLQTLALYYNNLTGQLPDFVGNLSAL 160 (472)
Q Consensus 81 ~~~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~i~~~~~~~l~~~~~L 160 (472)
.+..+++|++|+++++.+.. .+ .+..+++|++|++++|.++. .+. +..+++|++|++++|.+.+ . ..+..+++|
T Consensus 39 ~~~~l~~L~~L~l~~~~i~~-~~-~~~~~~~L~~L~l~~n~i~~-~~~-~~~l~~L~~L~L~~n~i~~-~-~~~~~l~~L 112 (347)
T 4fmz_A 39 TQEELESITKLVVAGEKVAS-IQ-GIEYLTNLEYLNLNGNQITD-ISP-LSNLVKLTNLYIGTNKITD-I-SALQNLTNL 112 (347)
T ss_dssp CHHHHTTCSEEECCSSCCCC-CT-TGGGCTTCCEEECCSSCCCC-CGG-GTTCTTCCEEECCSSCCCC-C-GGGTTCTTC
T ss_pred cchhcccccEEEEeCCcccc-ch-hhhhcCCccEEEccCCcccc-chh-hhcCCcCCEEEccCCcccC-c-hHHcCCCcC
Confidence 35567888888888887763 33 37778888888888888773 333 7778888888888887764 3 357777788
Q ss_pred cEEEecCCccccccccccccCCCccEEEccCCccccccccccccChhhhcCCCCccEEEcccccccccCCccCcCCCCCC
Q 040195 161 QVIYIRGNSLGGKIPTTLGLLRNLVYLNVNENQFWYVSSFSGSLPFDILVNLPNLKKLCIAENNFVGSIPDSLSNASNLE 240 (472)
Q Consensus 161 ~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~ 240 (472)
++|++++|.+.+. +. +..+++|++|++++|.... .+ ..+..+++|++|++++|.+....+ +..+++|+
T Consensus 113 ~~L~l~~n~i~~~-~~-~~~l~~L~~L~l~~n~~~~------~~--~~~~~l~~L~~L~l~~~~~~~~~~--~~~l~~L~ 180 (347)
T 4fmz_A 113 RELYLNEDNISDI-SP-LANLTKMYSLNLGANHNLS------DL--SPLSNMTGLNYLTVTESKVKDVTP--IANLTDLY 180 (347)
T ss_dssp SEEECTTSCCCCC-GG-GTTCTTCCEEECTTCTTCC------CC--GGGTTCTTCCEEECCSSCCCCCGG--GGGCTTCS
T ss_pred CEEECcCCcccCc-hh-hccCCceeEEECCCCCCcc------cc--cchhhCCCCcEEEecCCCcCCchh--hccCCCCC
Confidence 8888887777632 22 6667777777777764211 11 114455566666666665543222 45555555
Q ss_pred EEecCCCcccccccccccccCCCCeEEcCCCcCCCCCCCCcchhhhhcccCCCcCCchhhhccccccEEEeecccccCcc
Q 040195 241 LLELAGNQFEGKVSIDFSSLKNLAVLNLERNNLGIGTANDLGFVTFLTNCSSLKLPHSIANLSSTMTHFYIGGNQILGII 320 (472)
Q Consensus 241 ~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~l~l~~~~~~~~~ 320 (472)
+|++++|.+.+... +..+++|+.+++++ +.+....
T Consensus 181 ~L~l~~n~l~~~~~--~~~l~~L~~L~l~~-------------------------------------------n~l~~~~ 215 (347)
T 4fmz_A 181 SLSLNYNQIEDISP--LASLTSLHYFTAYV-------------------------------------------NQITDIT 215 (347)
T ss_dssp EEECTTSCCCCCGG--GGGCTTCCEEECCS-------------------------------------------SCCCCCG
T ss_pred EEEccCCccccccc--ccCCCccceeeccc-------------------------------------------CCCCCCc
Confidence 55555555543221 44455555555554 4444332
Q ss_pred cccccCccCcceEeccccccccCcchhhcCCCCCcEEEccCCcCccccccchhcccccCeeeccCCcccccCCcCccCCC
Q 040195 321 HFGIRNLVNLIALGMQSNQLHGTIPDVIGELKNLQILSLFGNFLHGSIPSSLGNLTKLANLELSSNSLQGNIPLSVGNCQ 400 (472)
Q Consensus 321 ~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~ 400 (472)
+ +..+++|++|++++|.+.+..+ +..+++|++|++++|.+++. ..+..+++|++|++++|++++ + ..+..++
T Consensus 216 ~--~~~~~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~l~~n~l~~-~-~~~~~l~ 287 (347)
T 4fmz_A 216 P--VANMTRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQISDI--NAVKDLTKLKMLNVGSNQISD-I-SVLNNLS 287 (347)
T ss_dssp G--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCC-C-GGGGGCT
T ss_pred h--hhcCCcCCEEEccCCccCCCcc--hhcCCCCCEEECCCCccCCC--hhHhcCCCcCEEEccCCccCC-C-hhhcCCC
Confidence 2 5677888888888888875544 77889999999999988753 467888999999999998884 3 4578899
Q ss_pred CCceEeecCCcccccCChhhhhhcccceEEEcCCCcccccccccccCCCCCceEeccCCeec
Q 040195 401 NLIGFDASHITLTGALPQQLLSITTLSLYLDLSHNLLNGSLLLQVGNLKNLILLDISGNQFS 462 (472)
Q Consensus 401 ~L~~L~ls~~~~~~~~~~~l~~~~~l~~~L~ls~n~l~~~~~~~l~~~~~L~~L~L~~n~~~ 462 (472)
+|+.|++++|.+.+..+..+..+++++ .|++++|++++..| +..+++|+.|++++|+++
T Consensus 288 ~L~~L~L~~n~l~~~~~~~l~~l~~L~-~L~L~~n~l~~~~~--~~~l~~L~~L~l~~N~i~ 346 (347)
T 4fmz_A 288 QLNSLFLNNNQLGNEDMEVIGGLTNLT-TLFLSQNHITDIRP--LASLSKMDSADFANQVIK 346 (347)
T ss_dssp TCSEEECCSSCCCGGGHHHHHTCTTCS-EEECCSSSCCCCGG--GGGCTTCSEESSSCC---
T ss_pred CCCEEECcCCcCCCcChhHhhccccCC-EEEccCCccccccC--hhhhhccceeehhhhccc
Confidence 999999999999877778889999999 99999999997655 888999999999999986
No 36
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=100.00 E-value=2.6e-32 Score=262.54 Aligned_cols=310 Identities=19% Similarity=0.180 Sum_probs=260.5
Q ss_pred CCceEEEECCCCccCcccCccccCCCCccEEeccCCcCccCcchhhhcCCCCCEEEccCcccCCCCCcccCCCCCCcEEE
Q 040195 37 HQRVTELDLSNQRIGGVLSPYVGNLSFLRYINLSDNGFHGEIPQEIGNLYRLEKLELSNNSFSGTIPTNLSRCSELTHLR 116 (472)
Q Consensus 37 ~~~l~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~ 116 (472)
.++++.++++++.+.......+..+++|++|++++|.+....+.++..+++|++|++++|.+.+..+..+..+++|++|+
T Consensus 44 l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 123 (390)
T 3o6n_A 44 LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLV 123 (390)
T ss_dssp GCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred cCCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEE
Confidence 37889999999999888877889999999999999999877778999999999999999999977788899999999999
Q ss_pred cccCcCcccCCccccCCCCCcEEEccccCCCCCCCccccCCCCccEEEecCCccccccccccccCCCccEEEccCCcccc
Q 040195 117 VANNKLEGQIPKEIGSLLKLQTLALYYNNLTGQLPDFVGNLSALQVIYIRGNSLGGKIPTTLGLLRNLVYLNVNENQFWY 196 (472)
Q Consensus 117 l~~~~~~~~~~~~l~~l~~L~~L~l~~~~i~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~ 196 (472)
+++|.++...+..+.++++|++|++++|.+.+..+..+..+++|++|++++|.++.. .+..+++|+.+++++|.+..
T Consensus 124 L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~---~~~~l~~L~~L~l~~n~l~~ 200 (390)
T 3o6n_A 124 LERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV---DLSLIPSLFHANVSYNLLST 200 (390)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBC---CGGGCTTCSEEECCSSCCSE
T ss_pred CCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCcc---ccccccccceeecccccccc
Confidence 999999954445578999999999999999977788899999999999999998753 35678999999999998744
Q ss_pred ccccccccChhhhcCCCCccEEEcccccccccCCccCcCCCCCCEEecCCCcccccccccccccCCCCeEEcCCCcCCCC
Q 040195 197 VSSFSGSLPFDILVNLPNLKKLCIAENNFVGSIPDSLSNASNLELLELAGNQFEGKVSIDFSSLKNLAVLNLERNNLGIG 276 (472)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~ 276 (472)
+. ..++|++|++++|.+..... ...++|+.|++++|.+++. ..+..+++|++|++++|.+.
T Consensus 201 ~~------------~~~~L~~L~l~~n~l~~~~~---~~~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~Ls~n~l~-- 261 (390)
T 3o6n_A 201 LA------------IPIAVEELDASHNSINVVRG---PVNVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELE-- 261 (390)
T ss_dssp EE------------CCSSCSEEECCSSCCCEEEC---CCCSSCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCC--
T ss_pred cC------------CCCcceEEECCCCeeeeccc---cccccccEEECCCCCCccc--HHHcCCCCccEEECCCCcCC--
Confidence 32 44689999999999886533 2358999999999999753 56778888888888777653
Q ss_pred CCCCcchhhhhcccCCCcCCchhhhccccccEEEeecccccCcccccccCccCcceEeccccccccCcchhhcCCCCCcE
Q 040195 277 TANDLGFVTFLTNCSSLKLPHSIANLSSTMTHFYIGGNQILGIIHFGIRNLVNLIALGMQSNQLHGTIPDVIGELKNLQI 356 (472)
Q Consensus 277 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~ 356 (472)
...+..+..+++|++|++++|.+.+ .+..+..+++|++
T Consensus 262 -----------------------------------------~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~l~~L~~ 299 (390)
T 3o6n_A 262 -----------------------------------------KIMYHPFVKMQRLERLYISNNRLVA-LNLYGQPIPTLKV 299 (390)
T ss_dssp -----------------------------------------EEESGGGTTCSSCCEEECCSSCCCE-EECSSSCCTTCCE
T ss_pred -----------------------------------------CcChhHccccccCCEEECCCCcCcc-cCcccCCCCCCCE
Confidence 2334456778889999999998874 4455577899999
Q ss_pred EEccCCcCccccccchhcccccCeeeccCCcccccCCcCccCCCCCceEeecCCcccc
Q 040195 357 LSLFGNFLHGSIPSSLGNLTKLANLELSSNSLQGNIPLSVGNCQNLIGFDASHITLTG 414 (472)
Q Consensus 357 L~L~~n~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ls~~~~~~ 414 (472)
|++++|++. .++..+..+++|++|++++|+++. ++ +..+++|+.|++++|++.+
T Consensus 300 L~L~~n~l~-~~~~~~~~l~~L~~L~L~~N~i~~-~~--~~~~~~L~~L~l~~N~~~~ 353 (390)
T 3o6n_A 300 LDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVT-LK--LSTHHTLKNLTLSHNDWDC 353 (390)
T ss_dssp EECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCC-CC--CCTTCCCSEEECCSSCEEH
T ss_pred EECCCCcce-ecCccccccCcCCEEECCCCccce-eC--chhhccCCEEEcCCCCccc
Confidence 999999988 566677889999999999999884 33 6778999999999999974
No 37
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=100.00 E-value=5.3e-32 Score=256.26 Aligned_cols=305 Identities=25% Similarity=0.309 Sum_probs=152.5
Q ss_pred cCCCCccEEeccCCcCccCcchhhhcCCCCCEEEccCcccCCCCCcccCCCCCCcEEEcccCcCcccCCccccCCCCCcE
Q 040195 59 GNLSFLRYINLSDNGFHGEIPQEIGNLYRLEKLELSNNSFSGTIPTNLSRCSELTHLRVANNKLEGQIPKEIGSLLKLQT 138 (472)
Q Consensus 59 ~~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~ 138 (472)
..+++|++|+++++.+... + .+..+++|++|++++|.+.+. +. +..+++|++|++++|.++. . ..+..+++|++
T Consensus 41 ~~l~~L~~L~l~~~~i~~~-~-~~~~~~~L~~L~l~~n~i~~~-~~-~~~l~~L~~L~L~~n~i~~-~-~~~~~l~~L~~ 114 (347)
T 4fmz_A 41 EELESITKLVVAGEKVASI-Q-GIEYLTNLEYLNLNGNQITDI-SP-LSNLVKLTNLYIGTNKITD-I-SALQNLTNLRE 114 (347)
T ss_dssp HHHTTCSEEECCSSCCCCC-T-TGGGCTTCCEEECCSSCCCCC-GG-GTTCTTCCEEECCSSCCCC-C-GGGTTCTTCSE
T ss_pred hhcccccEEEEeCCccccc-h-hhhhcCCccEEEccCCccccc-hh-hhcCCcCCEEEccCCcccC-c-hHHcCCCcCCE
Confidence 3455566666666555432 2 255566666666666655532 22 5566666666666665552 2 34556666666
Q ss_pred EEccccCCCCCCCccccCCCCccEEEecCCccccccccccccCCCccEEEccCCccccccccccccChhhhcCCCCccEE
Q 040195 139 LALYYNNLTGQLPDFVGNLSALQVIYIRGNSLGGKIPTTLGLLRNLVYLNVNENQFWYVSSFSGSLPFDILVNLPNLKKL 218 (472)
Q Consensus 139 L~l~~~~i~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~L~~L 218 (472)
|++++|.+.+. +. +..+++|++|++++|..... ...+..+++|++|++++|.+..... +..+++|++|
T Consensus 115 L~l~~n~i~~~-~~-~~~l~~L~~L~l~~n~~~~~-~~~~~~l~~L~~L~l~~~~~~~~~~---------~~~l~~L~~L 182 (347)
T 4fmz_A 115 LYLNEDNISDI-SP-LANLTKMYSLNLGANHNLSD-LSPLSNMTGLNYLTVTESKVKDVTP---------IANLTDLYSL 182 (347)
T ss_dssp EECTTSCCCCC-GG-GTTCTTCCEEECTTCTTCCC-CGGGTTCTTCCEEECCSSCCCCCGG---------GGGCTTCSEE
T ss_pred EECcCCcccCc-hh-hccCCceeEEECCCCCCccc-ccchhhCCCCcEEEecCCCcCCchh---------hccCCCCCEE
Confidence 66666665532 22 55566666666666643322 2335566666666666665533221 3455666666
Q ss_pred EcccccccccCCccCcCCCCCCEEecCCCcccccccccccccCCCCeEEcCCCcCCCCCCCCcchhhhhcccCCCcCCch
Q 040195 219 CIAENNFVGSIPDSLSNASNLELLELAGNQFEGKVSIDFSSLKNLAVLNLERNNLGIGTANDLGFVTFLTNCSSLKLPHS 298 (472)
Q Consensus 219 ~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 298 (472)
++++|.+.+..+ +..+++|+.+++++|.+.+... +..+++|++|++++|.+.... .
T Consensus 183 ~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~~~~-------------------~- 238 (347)
T 4fmz_A 183 SLNYNQIEDISP--LASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDLS-------------------P- 238 (347)
T ss_dssp ECTTSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCG-------------------G-
T ss_pred EccCCccccccc--ccCCCccceeecccCCCCCCch--hhcCCcCCEEEccCCccCCCc-------------------c-
Confidence 666666654322 5566777777777776654332 566666666666666554110 0
Q ss_pred hhhccccccEEEeecccccCcccccccCccCcceEeccccccccCcchhhcCCCCCcEEEccCCcCccccccchhccccc
Q 040195 299 IANLSSTMTHFYIGGNQILGIIHFGIRNLVNLIALGMQSNQLHGTIPDVIGELKNLQILSLFGNFLHGSIPSSLGNLTKL 378 (472)
Q Consensus 299 ~~~~~~~l~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~L 378 (472)
....++++.|++++|.++.. ..+..+++|+.|++++|.+.+. ..+..+++|++|++++|.+.+..+..+..+++|
T Consensus 239 -~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L 313 (347)
T 4fmz_A 239 -LANLSQLTWLEIGTNQISDI--NAVKDLTKLKMLNVGSNQISDI--SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNL 313 (347)
T ss_dssp -GTTCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTC
T ss_pred -hhcCCCCCEEECCCCccCCC--hhHhcCCCcCEEEccCCccCCC--hhhcCCCCCCEEECcCCcCCCcChhHhhccccC
Confidence 00011333333333333322 1233444444444444444432 223444444444444444444444444444444
Q ss_pred CeeeccCCcccccCCcCccCCCCCceEeecCCcc
Q 040195 379 ANLELSSNSLQGNIPLSVGNCQNLIGFDASHITL 412 (472)
Q Consensus 379 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~ls~~~~ 412 (472)
++|++++|++++..+ +..+++|++|++++|++
T Consensus 314 ~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~N~i 345 (347)
T 4fmz_A 314 TTLFLSQNHITDIRP--LASLSKMDSADFANQVI 345 (347)
T ss_dssp SEEECCSSSCCCCGG--GGGCTTCSEESSSCC--
T ss_pred CEEEccCCccccccC--hhhhhccceeehhhhcc
Confidence 444444444442222 34444444444444443
No 38
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=100.00 E-value=4.4e-33 Score=259.04 Aligned_cols=254 Identities=31% Similarity=0.507 Sum_probs=186.8
Q ss_pred CCCCCCCCCCCCCCCccc--ccceeeCCCC--CceEEEECCCCccCc--ccCccccCCCCccEEeccC-CcCccCcchhh
Q 040195 10 HDPSGVTSSWNNTINLCQ--WMGVTCGHRH--QRVTELDLSNQRIGG--VLSPYVGNLSFLRYINLSD-NGFHGEIPQEI 82 (472)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~~--~~l~~L~l~~~~~~~--~~~~~l~~~~~L~~L~L~~-~~~~~~~~~~~ 82 (472)
.||. .++.|+.+.++|. |.|+.|.... .+|++|+++++.+.+ ..+..+.++++|++|++++ +.+.+..|..+
T Consensus 19 ~~~~-~l~~W~~~~~~C~~~w~gv~C~~~~~~~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l 97 (313)
T 1ogq_A 19 GNPT-TLSSWLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAI 97 (313)
T ss_dssp TCCG-GGTTCCTTSCTTTTCSTTEEECCSSSCCCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGG
T ss_pred CCcc-cccCCCCCCCCCcCCCcceEeCCCCCCceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhH
Confidence 3454 6899998889999 9999997554 789999999999987 7778888999999999985 77777788888
Q ss_pred hcCCCCCEEEccCcccCCCCCcccCCCCCCcEEEcccCcCcccCCccccCCCCCcEEEccccCCCCCCCccccCCC-Ccc
Q 040195 83 GNLYRLEKLELSNNSFSGTIPTNLSRCSELTHLRVANNKLEGQIPKEIGSLLKLQTLALYYNNLTGQLPDFVGNLS-ALQ 161 (472)
Q Consensus 83 ~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~i~~~~~~~l~~~~-~L~ 161 (472)
.++++|++|++++|.+.+..|..+.++++|++|++++|.+.+..|..+..+++|++|++++|.+.+..|..+..++ +|+
T Consensus 98 ~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~ 177 (313)
T 1ogq_A 98 AKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFT 177 (313)
T ss_dssp GGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCC
T ss_pred hcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCc
Confidence 8899999999988888777788888888888888888888777778888888888888888888777777787776 888
Q ss_pred EEEecCCccccccccccccCCCccEEEccCCccccccccccccChhhhcCCCCccEEEcccccccccCCccCcCCCCCCE
Q 040195 162 VIYIRGNSLGGKIPTTLGLLRNLVYLNVNENQFWYVSSFSGSLPFDILVNLPNLKKLCIAENNFVGSIPDSLSNASNLEL 241 (472)
Q Consensus 162 ~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~ 241 (472)
+|++++|.+++..+..+..++ |++|++++|.+. ......+..+++|+.|++++|.+++..+. +..+++|++
T Consensus 178 ~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~l~-------~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~ 248 (313)
T 1ogq_A 178 SMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLE-------GDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNG 248 (313)
T ss_dssp EEECCSSEEEEECCGGGGGCC-CSEEECCSSEEE-------ECCGGGCCTTSCCSEEECCSSEECCBGGG-CCCCTTCCE
T ss_pred EEECcCCeeeccCChHHhCCc-ccEEECcCCccc-------CcCCHHHhcCCCCCEEECCCCceeeecCc-ccccCCCCE
Confidence 888888888777777777665 777777777652 22233444556666666666655543333 445555555
Q ss_pred EecCCCcccccccccccccCCCCeEEcCCCcC
Q 040195 242 LELAGNQFEGKVSIDFSSLKNLAVLNLERNNL 273 (472)
Q Consensus 242 L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~ 273 (472)
|++++|.+++..+..+..+++|++|++++|++
T Consensus 249 L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l 280 (313)
T 1ogq_A 249 LDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNL 280 (313)
T ss_dssp EECCSSCCEECCCGGGGGCTTCCEEECCSSEE
T ss_pred EECcCCcccCcCChHHhcCcCCCEEECcCCcc
Confidence 55555555544444555555555555544443
No 39
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=100.00 E-value=3.2e-31 Score=268.59 Aligned_cols=309 Identities=19% Similarity=0.182 Sum_probs=249.4
Q ss_pred CceEEEECCCCccCcccCccccCCCCccEEeccCCcCccCcchhhhcCCCCCEEEccCcccCCCCCcccCCCCCCcEEEc
Q 040195 38 QRVTELDLSNQRIGGVLSPYVGNLSFLRYINLSDNGFHGEIPQEIGNLYRLEKLELSNNSFSGTIPTNLSRCSELTHLRV 117 (472)
Q Consensus 38 ~~l~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l 117 (472)
.+++.++++++.+....+..+..+++|++|++++|.+....+..|..+++|++|++++|.+.+..+..|..+++|++|++
T Consensus 51 ~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 130 (597)
T 3oja_B 51 NNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVL 130 (597)
T ss_dssp CCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEe
Confidence 67899999999998888888899999999999999999888889999999999999999999888888999999999999
Q ss_pred ccCcCcccCCccccCCCCCcEEEccccCCCCCCCccccCCCCccEEEecCCccccccccccccCCCccEEEccCCccccc
Q 040195 118 ANNKLEGQIPKEIGSLLKLQTLALYYNNLTGQLPDFVGNLSALQVIYIRGNSLGGKIPTTLGLLRNLVYLNVNENQFWYV 197 (472)
Q Consensus 118 ~~~~~~~~~~~~l~~l~~L~~L~l~~~~i~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~ 197 (472)
++|.++...+..|..+++|++|++++|.+.+..+..+..+++|++|++++|.+++. .+..+++|+.|++++|.+..+
T Consensus 131 ~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~---~~~~l~~L~~L~l~~n~l~~l 207 (597)
T 3oja_B 131 ERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV---DLSLIPSLFHANVSYNLLSTL 207 (597)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBC---CGGGCTTCSEEECCSSCCSEE
T ss_pred eCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCc---ChhhhhhhhhhhcccCccccc
Confidence 99999965555679999999999999999988888899999999999999998754 356789999999999987433
Q ss_pred cccccccChhhhcCCCCccEEEcccccccccCCccCcCCCCCCEEecCCCcccccccccccccCCCCeEEcCCCcCCCCC
Q 040195 198 SSFSGSLPFDILVNLPNLKKLCIAENNFVGSIPDSLSNASNLELLELAGNQFEGKVSIDFSSLKNLAVLNLERNNLGIGT 277 (472)
Q Consensus 198 ~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~ 277 (472)
...++|+.|++++|.+....+. ..++|+.|++++|.+++ +..+..+++|+.|++++|.+.
T Consensus 208 ------------~~~~~L~~L~ls~n~l~~~~~~---~~~~L~~L~L~~n~l~~--~~~l~~l~~L~~L~Ls~N~l~--- 267 (597)
T 3oja_B 208 ------------AIPIAVEELDASHNSINVVRGP---VNVELTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELE--- 267 (597)
T ss_dssp ------------ECCTTCSEEECCSSCCCEEECS---CCSCCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCC---
T ss_pred ------------cCCchhheeeccCCcccccccc---cCCCCCEEECCCCCCCC--ChhhccCCCCCEEECCCCccC---
Confidence 2456899999999998764433 24789999999999975 356788888888888887664
Q ss_pred CCCcchhhhhcccCCCcCCchhhhccccccEEEeecccccCcccccccCccCcceEeccccccccCcchhhcCCCCCcEE
Q 040195 278 ANDLGFVTFLTNCSSLKLPHSIANLSSTMTHFYIGGNQILGIIHFGIRNLVNLIALGMQSNQLHGTIPDVIGELKNLQIL 357 (472)
Q Consensus 278 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L 357 (472)
...+..|..+++|+.|+|++|.+.+ ++..+..+++|+.|
T Consensus 268 ----------------------------------------~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L 306 (597)
T 3oja_B 268 ----------------------------------------KIMYHPFVKMQRLERLYISNNRLVA-LNLYGQPIPTLKVL 306 (597)
T ss_dssp ----------------------------------------EEESGGGTTCSSCCEEECTTSCCCE-EECSSSCCTTCCEE
T ss_pred ----------------------------------------CCCHHHhcCccCCCEEECCCCCCCC-CCcccccCCCCcEE
Confidence 2233455666777777777777764 34445567777777
Q ss_pred EccCCcCccccccchhcccccCeeeccCCcccccCCcCccCCCCCceEeecCCcccc
Q 040195 358 SLFGNFLHGSIPSSLGNLTKLANLELSSNSLQGNIPLSVGNCQNLIGFDASHITLTG 414 (472)
Q Consensus 358 ~L~~n~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ls~~~~~~ 414 (472)
++++|.+. .+|..+..+++|+.|++++|+++. ++ +..+++|+.|++++|++.+
T Consensus 307 ~Ls~N~l~-~i~~~~~~l~~L~~L~L~~N~l~~-~~--~~~~~~L~~L~l~~N~~~~ 359 (597)
T 3oja_B 307 DLSHNHLL-HVERNQPQFDRLENLYLDHNSIVT-LK--LSTHHTLKNLTLSHNDWDC 359 (597)
T ss_dssp ECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCC-CC--CCTTCCCSEEECCSSCEEH
T ss_pred ECCCCCCC-ccCcccccCCCCCEEECCCCCCCC-cC--hhhcCCCCEEEeeCCCCCC
Confidence 77777776 456666777777777777777763 22 5566777777777777763
No 40
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.98 E-value=3.8e-35 Score=289.01 Aligned_cols=385 Identities=18% Similarity=0.134 Sum_probs=232.5
Q ss_pred CCceEEEECCCCccCcccCc-cccCCCCccEEeccCCcCccC----cchhhhcCCCCCEEEccCcccCCCCCccc-CCCC
Q 040195 37 HQRVTELDLSNQRIGGVLSP-YVGNLSFLRYINLSDNGFHGE----IPQEIGNLYRLEKLELSNNSFSGTIPTNL-SRCS 110 (472)
Q Consensus 37 ~~~l~~L~l~~~~~~~~~~~-~l~~~~~L~~L~L~~~~~~~~----~~~~~~~l~~L~~L~L~~~~~~~~~~~~l-~~l~ 110 (472)
.+++++|+++++.+...... .+..+++|++|++++|.+... ++..+..+++|++|++++|.+.+..+..+ ..++
T Consensus 2 ~~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~ 81 (461)
T 1z7x_W 2 SLDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQ 81 (461)
T ss_dssp CEEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTC
T ss_pred CccceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHh
Confidence 36788899998888765433 367888999999998887642 35567778889999998888764333222 2333
Q ss_pred ----CCcEEEcccCcCcc----cCCccccCCCCCcEEEccccCCCCCCCcccc-----CCCCccEEEecCCcccccc---
Q 040195 111 ----ELTHLRVANNKLEG----QIPKEIGSLLKLQTLALYYNNLTGQLPDFVG-----NLSALQVIYIRGNSLGGKI--- 174 (472)
Q Consensus 111 ----~L~~L~l~~~~~~~----~~~~~l~~l~~L~~L~l~~~~i~~~~~~~l~-----~~~~L~~L~l~~~~~~~~~--- 174 (472)
+|++|++++|.++. .++..+..+++|++|++++|.+.+..+..+. ..++|++|++++|.+++..
T Consensus 82 ~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~ 161 (461)
T 1z7x_W 82 TPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEP 161 (461)
T ss_dssp STTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHH
T ss_pred hCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHH
Confidence 68888888888773 3466677888888888888877643333332 2457888888888776533
Q ss_pred -ccccccCCCccEEEccCCccccccccccccChhhhcCCCCccEEEccccccccc----CCccCcCCCCCCEEecCCCcc
Q 040195 175 -PTTLGLLRNLVYLNVNENQFWYVSSFSGSLPFDILVNLPNLKKLCIAENNFVGS----IPDSLSNASNLELLELAGNQF 249 (472)
Q Consensus 175 -~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~----~~~~l~~~~~L~~L~l~~~~~ 249 (472)
+..+..+++|++|++++|.+.+.+. ..+........++|++|++++|.++.. ++..+..+++|++|++++|.+
T Consensus 162 l~~~l~~~~~L~~L~L~~n~i~~~~~--~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l 239 (461)
T 1z7x_W 162 LASVLRAKPDFKELTVSNNDINEAGV--RVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKL 239 (461)
T ss_dssp HHHHHHHCTTCCEEECCSSBCHHHHH--HHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBC
T ss_pred HHHHHhhCCCCCEEECcCCCcchHHH--HHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcC
Confidence 3445566788888888877643221 111111112345677777777766642 244455666777777777766
Q ss_pred cccccccc-----cccCCCCeEEcCCCcCCCCCCCCcchhhhhcccCCCcCCchhhhccccccEEEeecccccCcccccc
Q 040195 250 EGKVSIDF-----SSLKNLAVLNLERNNLGIGTANDLGFVTFLTNCSSLKLPHSIANLSSTMTHFYIGGNQILGIIHFGI 324 (472)
Q Consensus 250 ~~~~~~~l-----~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~l 324 (472)
++.....+ ..+++|++|++++|.++..+.. ..+..+
T Consensus 240 ~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~---------------------------------------~l~~~l 280 (461)
T 1z7x_W 240 GDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCG---------------------------------------DLCRVL 280 (461)
T ss_dssp HHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHH---------------------------------------HHHHHH
T ss_pred ChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHH---------------------------------------HHHHHH
Confidence 54332221 2355666666666655421100 012234
Q ss_pred cCccCcceEeccccccccCcchhhc-----CCCCCcEEEccCCcCccc----cccchhcccccCeeeccCCcccccCCcC
Q 040195 325 RNLVNLIALGMQSNQLHGTIPDVIG-----ELKNLQILSLFGNFLHGS----IPSSLGNLTKLANLELSSNSLQGNIPLS 395 (472)
Q Consensus 325 ~~~~~L~~L~l~~~~i~~~~~~~~~-----~~~~L~~L~L~~n~l~~~----~~~~l~~~~~L~~L~l~~~~~~~~~~~~ 395 (472)
..+++|++|++++|.+.+..+..+. ..++|++|++++|.+++. ++..+..+++|++|++++|.+++..+..
T Consensus 281 ~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~ 360 (461)
T 1z7x_W 281 RAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRE 360 (461)
T ss_dssp HHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHH
T ss_pred hhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHH
Confidence 4456666666666666544333222 125677777777766544 3444555677777777777666433322
Q ss_pred ccC-----CCCCceEeecCCcccc----cCChhhhhhcccceEEEcCCCccccccccccc-----CCCCCceEeccCCee
Q 040195 396 VGN-----CQNLIGFDASHITLTG----ALPQQLLSITTLSLYLDLSHNLLNGSLLLQVG-----NLKNLILLDISGNQF 461 (472)
Q Consensus 396 ~~~-----~~~L~~L~ls~~~~~~----~~~~~l~~~~~l~~~L~ls~n~l~~~~~~~l~-----~~~~L~~L~L~~n~~ 461 (472)
+.. .++|++|++++|.+++ .++..+..+++++ .|++++|++++.....+. ....|+.|++.++.+
T Consensus 361 l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~-~L~l~~N~i~~~~~~~l~~~l~~~~~~L~~L~~~~~~~ 439 (461)
T 1z7x_W 361 LCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLR-ELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYW 439 (461)
T ss_dssp HHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCC-EEECCSSSCCHHHHHHHHHHHTSTTCCCCEEECTTCCC
T ss_pred HHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCcc-EEECCCCCCCHHHHHHHHHHhccCCcchhheeeccccc
Confidence 221 5677777777777764 5566666677777 777777777654222221 123566666666655
Q ss_pred cc
Q 040195 462 SG 463 (472)
Q Consensus 462 ~~ 463 (472)
..
T Consensus 440 ~~ 441 (461)
T 1z7x_W 440 SE 441 (461)
T ss_dssp CH
T ss_pred CH
Confidence 43
No 41
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.98 E-value=3.4e-31 Score=258.30 Aligned_cols=341 Identities=24% Similarity=0.296 Sum_probs=222.5
Q ss_pred CCCCccEEeccCCcCccCcchhhhcCCCCCEEEccCcccCCCCCcccCCCCCC-------------cEEEcccCcCcccC
Q 040195 60 NLSFLRYINLSDNGFHGEIPQEIGNLYRLEKLELSNNSFSGTIPTNLSRCSEL-------------THLRVANNKLEGQI 126 (472)
Q Consensus 60 ~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L-------------~~L~l~~~~~~~~~ 126 (472)
+.++|++|+++++.+ +.+|..++++++|++|++++|.+.+..|..++++++| ++|++++|.+++ +
T Consensus 9 ~~~~L~~L~l~~n~l-~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~l~~-l 86 (454)
T 1jl5_A 9 SNTFLQEPLRHSSNL-TEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLSS-L 86 (454)
T ss_dssp --------------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSCCSC-C
T ss_pred ccccchhhhcccCch-hhCChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEEEecCCcccc-C
Confidence 468999999999999 4889999999999999999999988899999888765 999999999884 4
Q ss_pred CccccCCCCCcEEEccccCCCCCCCccccCCCCccEEEecCCccccccccccccCCCccEEEccCCccccccccccccCh
Q 040195 127 PKEIGSLLKLQTLALYYNNLTGQLPDFVGNLSALQVIYIRGNSLGGKIPTTLGLLRNLVYLNVNENQFWYVSSFSGSLPF 206 (472)
Q Consensus 127 ~~~l~~l~~L~~L~l~~~~i~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~ 206 (472)
|.. .++|++|++++|.+++ +|.. .++|++|++++|.+++ .+.. .++|++|++++|.+.. +|
T Consensus 87 p~~---~~~L~~L~l~~n~l~~-lp~~---~~~L~~L~l~~n~l~~-l~~~---~~~L~~L~L~~n~l~~-------lp- 147 (454)
T 1jl5_A 87 PEL---PPHLESLVASCNSLTE-LPEL---PQSLKSLLVDNNNLKA-LSDL---PPLLEYLGVSNNQLEK-------LP- 147 (454)
T ss_dssp CSC---CTTCSEEECCSSCCSS-CCCC---CTTCCEEECCSSCCSC-CCSC---CTTCCEEECCSSCCSS-------CC-
T ss_pred CCC---cCCCCEEEccCCcCCc-cccc---cCCCcEEECCCCccCc-ccCC---CCCCCEEECcCCCCCC-------Cc-
Confidence 442 3799999999999985 5543 4899999999998874 2221 2699999999998743 44
Q ss_pred hhhcCCCCccEEEcccccccccCCccCcCCCCCCEEecCCCcccccccccccccCCCCeEEcCCCcCCCCCCCCcchhhh
Q 040195 207 DILVNLPNLKKLCIAENNFVGSIPDSLSNASNLELLELAGNQFEGKVSIDFSSLKNLAVLNLERNNLGIGTANDLGFVTF 286 (472)
Q Consensus 207 ~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~ 286 (472)
.+..+++|++|++++|.+++ +|.. .++|++|++++|.+++ .+ .+..+++|++|++++|.+...+.
T Consensus 148 -~~~~l~~L~~L~l~~N~l~~-lp~~---~~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l~~N~l~~l~~-------- 212 (454)
T 1jl5_A 148 -ELQNSSFLKIIDVDNNSLKK-LPDL---PPSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYADNNSLKKLPD-------- 212 (454)
T ss_dssp -CCTTCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSSCCC--------
T ss_pred -ccCCCCCCCEEECCCCcCcc-cCCC---cccccEEECcCCcCCc-Cc-cccCCCCCCEEECCCCcCCcCCC--------
Confidence 26689999999999999985 4443 3699999999999986 33 68999999999999998863211
Q ss_pred hcccCCCcCCchhhhccccccEEEeecccccCcccccccCccCcceEeccccccccCcchhhcCCCCCcEEEccCCcCcc
Q 040195 287 LTNCSSLKLPHSIANLSSTMTHFYIGGNQILGIIHFGIRNLVNLIALGMQSNQLHGTIPDVIGELKNLQILSLFGNFLHG 366 (472)
Q Consensus 287 ~~~~~~l~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~L~~n~l~~ 366 (472)
..++++.|++++|.+..+. .+..+++|++|++++|.+.+ +|.. .++|++|++++|.+.+
T Consensus 213 ---------------~~~~L~~L~l~~n~l~~lp--~~~~l~~L~~L~l~~N~l~~-l~~~---~~~L~~L~l~~N~l~~ 271 (454)
T 1jl5_A 213 ---------------LPLSLESIVAGNNILEELP--ELQNLPFLTTIYADNNLLKT-LPDL---PPSLEALNVRDNYLTD 271 (454)
T ss_dssp ---------------CCTTCCEEECCSSCCSSCC--CCTTCTTCCEEECCSSCCSS-CCSC---CTTCCEEECCSSCCSC
T ss_pred ---------------CcCcccEEECcCCcCCccc--ccCCCCCCCEEECCCCcCCc-cccc---ccccCEEECCCCcccc
Confidence 0124555555555555322 24555555555555555542 2211 2444555555554442
Q ss_pred ccccch-----------------hcccccCeeeccCCcccccCCcCccCCCCCceEeecCCcccccCChhhhhhcccceE
Q 040195 367 SIPSSL-----------------GNLTKLANLELSSNSLQGNIPLSVGNCQNLIGFDASHITLTGALPQQLLSITTLSLY 429 (472)
Q Consensus 367 ~~~~~l-----------------~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ls~~~~~~~~~~~l~~~~~l~~~ 429 (472)
++..+ ...++|++|++++|++++ ++ ...++|+.|++++|.+.+ +|.. +++++ .
T Consensus 272 -l~~~~~~L~~L~ls~N~l~~l~~~~~~L~~L~l~~N~l~~-i~---~~~~~L~~L~Ls~N~l~~-lp~~---~~~L~-~ 341 (454)
T 1jl5_A 272 -LPELPQSLTFLDVSENIFSGLSELPPNLYYLNASSNEIRS-LC---DLPPSLEELNVSNNKLIE-LPAL---PPRLE-R 341 (454)
T ss_dssp -CCCCCTTCCEEECCSSCCSEESCCCTTCCEEECCSSCCSE-EC---CCCTTCCEEECCSSCCSC-CCCC---CTTCC-E
T ss_pred -cCcccCcCCEEECcCCccCcccCcCCcCCEEECcCCcCCc-cc---CCcCcCCEEECCCCcccc-cccc---CCcCC-E
Confidence 22111 011455555555555552 11 112589999999998884 6654 46788 9
Q ss_pred EEcCCCcccccccccccCCCCCceEeccCCeecc--ccCCcccc
Q 040195 430 LDLSHNLLNGSLLLQVGNLKNLILLDISGNQFSG--VIPVTLSI 471 (472)
Q Consensus 430 L~ls~n~l~~~~~~~l~~~~~L~~L~L~~n~~~~--~~p~~~~~ 471 (472)
|++++|+++. +|. .+++|+.|++++|++++ .+|..+++
T Consensus 342 L~L~~N~l~~-lp~---~l~~L~~L~L~~N~l~~l~~ip~~l~~ 381 (454)
T 1jl5_A 342 LIASFNHLAE-VPE---LPQNLKQLHVEYNPLREFPDIPESVED 381 (454)
T ss_dssp EECCSSCCSC-CCC---CCTTCCEEECCSSCCSSCCCCCTTCCE
T ss_pred EECCCCcccc-ccc---hhhhccEEECCCCCCCcCCCChHHHHh
Confidence 9999999984 454 47899999999999998 78887754
No 42
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.98 E-value=1.9e-30 Score=253.35 Aligned_cols=328 Identities=20% Similarity=0.161 Sum_probs=232.6
Q ss_pred cCccccCCCCccEEeccCCcCccCcchhhhcCCCCCEEEccCcccCCCCCcccCCCCCCcEEEcccCcCcccCCccccCC
Q 040195 54 LSPYVGNLSFLRYINLSDNGFHGEIPQEIGNLYRLEKLELSNNSFSGTIPTNLSRCSELTHLRVANNKLEGQIPKEIGSL 133 (472)
Q Consensus 54 ~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l 133 (472)
.+..+..+++|++|+++++.+.+. | .+..+++|++|++++|.+.+. + +..+++|++|++++|.+++. + +.++
T Consensus 34 ~~~~~~~l~~L~~L~Ls~n~l~~~-~-~l~~l~~L~~L~Ls~n~l~~~-~--~~~l~~L~~L~Ls~N~l~~~-~--~~~l 105 (457)
T 3bz5_A 34 DTISEEQLATLTSLDCHNSSITDM-T-GIEKLTGLTKLICTSNNITTL-D--LSQNTNLTYLACDSNKLTNL-D--VTPL 105 (457)
T ss_dssp SEEEHHHHTTCCEEECCSSCCCCC-T-TGGGCTTCSEEECCSSCCSCC-C--CTTCTTCSEEECCSSCCSCC-C--CTTC
T ss_pred cccChhHcCCCCEEEccCCCcccC-h-hhcccCCCCEEEccCCcCCeE-c--cccCCCCCEEECcCCCCcee-e--cCCC
Confidence 334567788899999998888754 4 688888999999998888753 3 77888899999998888753 2 7788
Q ss_pred CCCcEEEccccCCCCCCCccccCCCCccEEEecCCccccccccccccCCCccEEEccCCccccccccccccChhhhcCCC
Q 040195 134 LKLQTLALYYNNLTGQLPDFVGNLSALQVIYIRGNSLGGKIPTTLGLLRNLVYLNVNENQFWYVSSFSGSLPFDILVNLP 213 (472)
Q Consensus 134 ~~L~~L~l~~~~i~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~ 213 (472)
++|++|++++|.+++ .+ +..+++|++|++++|.+++. .++.+++|++|++++|... +.+ .+..++
T Consensus 106 ~~L~~L~L~~N~l~~-l~--~~~l~~L~~L~l~~N~l~~l---~l~~l~~L~~L~l~~n~~~------~~~---~~~~l~ 170 (457)
T 3bz5_A 106 TKLTYLNCDTNKLTK-LD--VSQNPLLTYLNCARNTLTEI---DVSHNTQLTELDCHLNKKI------TKL---DVTPQT 170 (457)
T ss_dssp TTCCEEECCSSCCSC-CC--CTTCTTCCEEECTTSCCSCC---CCTTCTTCCEEECTTCSCC------CCC---CCTTCT
T ss_pred CcCCEEECCCCcCCe-ec--CCCCCcCCEEECCCCcccee---ccccCCcCCEEECCCCCcc------ccc---ccccCC
Confidence 889999998888875 33 77888888888888888753 3677888888888888421 222 144677
Q ss_pred CccEEEcccccccccCCccCcCCCCCCEEecCCCcccccccccccccCCCCeEEcCCCcCCCCCCCCcchhhhhcccCCC
Q 040195 214 NLKKLCIAENNFVGSIPDSLSNASNLELLELAGNQFEGKVSIDFSSLKNLAVLNLERNNLGIGTANDLGFVTFLTNCSSL 293 (472)
Q Consensus 214 ~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l 293 (472)
+|+.|++++|.+++. + +..+++|+.|++++|.+++. .+..+++|++|++++|+++..
T Consensus 171 ~L~~L~ls~n~l~~l-~--l~~l~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~~i----------------- 227 (457)
T 3bz5_A 171 QLTTLDCSFNKITEL-D--VSQNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTEI----------------- 227 (457)
T ss_dssp TCCEEECCSSCCCCC-C--CTTCTTCCEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSCC-----------------
T ss_pred cCCEEECCCCcccee-c--cccCCCCCEEECcCCcCCee---ccccCCCCCEEECcCCccccc-----------------
Confidence 888888888887753 3 67778888888888887753 366777888888888776531
Q ss_pred cCCchhhhccccccEEEeecccccCcccccccCccCcceEeccccccccCcchhhcCCCCCcEEEccCCcCccccccchh
Q 040195 294 KLPHSIANLSSTMTHFYIGGNQILGIIHFGIRNLVNLIALGMQSNQLHGTIPDVIGELKNLQILSLFGNFLHGSIPSSLG 373 (472)
Q Consensus 294 ~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~ 373 (472)
| +. ..++++.|++++|.++... +..+++|+.|+++++ +|+.|++++|.+.+.+| +.
T Consensus 228 --p--~~-~l~~L~~L~l~~N~l~~~~---~~~l~~L~~L~l~~n--------------~L~~L~l~~n~~~~~~~--~~ 283 (457)
T 3bz5_A 228 --D--VT-PLTQLTYFDCSVNPLTELD---VSTLSKLTTLHCIQT--------------DLLEIDLTHNTQLIYFQ--AE 283 (457)
T ss_dssp --C--CT-TCTTCSEEECCSSCCSCCC---CTTCTTCCEEECTTC--------------CCSCCCCTTCTTCCEEE--CT
T ss_pred --C--cc-ccCCCCEEEeeCCcCCCcC---HHHCCCCCEEeccCC--------------CCCEEECCCCccCCccc--cc
Confidence 1 00 1125666677666666542 345566666665543 45667777777665555 46
Q ss_pred cccccCeeeccCCcccccCCc--------CccCCCCCceEeecCCcccccCChhhhhhcccceEEEcCCCcccccccccc
Q 040195 374 NLTKLANLELSSNSLQGNIPL--------SVGNCQNLIGFDASHITLTGALPQQLLSITTLSLYLDLSHNLLNGSLLLQV 445 (472)
Q Consensus 374 ~~~~L~~L~l~~~~~~~~~~~--------~~~~~~~L~~L~ls~~~~~~~~~~~l~~~~~l~~~L~ls~n~l~~~~~~~l 445 (472)
.+++|+.|++++|+..+.++. .+..+++|+.|++++|.+++ ++ +..++.|+ .|++++|++++
T Consensus 284 ~l~~L~~L~Ls~n~~l~~l~~~~~~L~~L~l~~~~~L~~L~L~~N~l~~-l~--l~~l~~L~-~L~l~~N~l~~------ 353 (457)
T 3bz5_A 284 GCRKIKELDVTHNTQLYLLDCQAAGITELDLSQNPKLVYLYLNNTELTE-LD--VSHNTKLK-SLSCVNAHIQD------ 353 (457)
T ss_dssp TCTTCCCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEECTTCCCSC-CC--CTTCTTCS-EEECCSSCCCB------
T ss_pred ccccCCEEECCCCcccceeccCCCcceEechhhcccCCEEECCCCcccc-cc--cccCCcCc-EEECCCCCCCC------
Confidence 789999999999986655442 24556777888888887774 32 67777777 78888887764
Q ss_pred cCCCCCceEeccCCeecc
Q 040195 446 GNLKNLILLDISGNQFSG 463 (472)
Q Consensus 446 ~~~~~L~~L~L~~n~~~~ 463 (472)
+++|..|++++|.+++
T Consensus 354 --l~~L~~L~l~~n~l~g 369 (457)
T 3bz5_A 354 --FSSVGKIPALNNNFEA 369 (457)
T ss_dssp --CTTGGGSSGGGTSEEE
T ss_pred --ccccccccccCCcEEe
Confidence 2456666777777654
No 43
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.97 E-value=4e-34 Score=281.72 Aligned_cols=356 Identities=20% Similarity=0.149 Sum_probs=233.9
Q ss_pred CCccEEeccCCcCccCcch-hhhcCCCCCEEEccCcccCCC----CCcccCCCCCCcEEEcccCcCcccCCccc-cCCC-
Q 040195 62 SFLRYINLSDNGFHGEIPQ-EIGNLYRLEKLELSNNSFSGT----IPTNLSRCSELTHLRVANNKLEGQIPKEI-GSLL- 134 (472)
Q Consensus 62 ~~L~~L~L~~~~~~~~~~~-~~~~l~~L~~L~L~~~~~~~~----~~~~l~~l~~L~~L~l~~~~~~~~~~~~l-~~l~- 134 (472)
++|++|+++++.+...... .+..+++|++|++++|.+.+. ++..+..+++|++|++++|.+....+..+ ..++
T Consensus 3 ~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~ 82 (461)
T 1z7x_W 3 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQT 82 (461)
T ss_dssp EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCS
T ss_pred ccceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhh
Confidence 5678899988887654333 377888899999988887632 34556777888888888888764333322 2233
Q ss_pred ---CCcEEEccccCCCC----CCCccccCCCCccEEEecCCccccccccccc-----cCCCccEEEccCCcccccccccc
Q 040195 135 ---KLQTLALYYNNLTG----QLPDFVGNLSALQVIYIRGNSLGGKIPTTLG-----LLRNLVYLNVNENQFWYVSSFSG 202 (472)
Q Consensus 135 ---~L~~L~l~~~~i~~----~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~-----~~~~L~~L~l~~~~l~~~~~~~~ 202 (472)
+|++|++++|.+++ .++..+..+++|++|++++|.+++..+..+. ..++|++|++++|.+.....
T Consensus 83 ~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~--- 159 (461)
T 1z7x_W 83 PSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASC--- 159 (461)
T ss_dssp TTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGH---
T ss_pred CCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHH---
Confidence 57788887777763 2356666777777777777776543333322 23456666666666533211
Q ss_pred ccChhhhcCCCCccEEEcccccccccCCccCc-----CCCCCCEEecCCCcccccc----cccccccCCCCeEEcCCCcC
Q 040195 203 SLPFDILVNLPNLKKLCIAENNFVGSIPDSLS-----NASNLELLELAGNQFEGKV----SIDFSSLKNLAVLNLERNNL 273 (472)
Q Consensus 203 ~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~-----~~~~L~~L~l~~~~~~~~~----~~~l~~l~~L~~L~l~~~~~ 273 (472)
......+..+++|++|++++|.+....+..+. ..++|++|++++|.+++.. +..+..+++|++|++++
T Consensus 160 ~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~--- 236 (461)
T 1z7x_W 160 EPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGS--- 236 (461)
T ss_dssp HHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCS---
T ss_pred HHHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccC---
Confidence 00012233445555555555554432221111 2345555555555544321 22333444555555544
Q ss_pred CCCCCCCcchhhhhcccCCCcCCchhhhccccccEEEeecccccCcc-----cccccCccCcceEeccccccccC----c
Q 040195 274 GIGTANDLGFVTFLTNCSSLKLPHSIANLSSTMTHFYIGGNQILGII-----HFGIRNLVNLIALGMQSNQLHGT----I 344 (472)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~l~l~~~~~~~~~-----~~~l~~~~~L~~L~l~~~~i~~~----~ 344 (472)
|.++... ...+..+++|++|++++|.+.+. +
T Consensus 237 ----------------------------------------n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l 276 (461)
T 1z7x_W 237 ----------------------------------------NKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDL 276 (461)
T ss_dssp ----------------------------------------SBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHH
T ss_pred ----------------------------------------CcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHH
Confidence 4443321 22233578999999999988864 4
Q ss_pred chhhcCCCCCcEEEccCCcCccccccchhc-----ccccCeeeccCCccccc----CCcCccCCCCCceEeecCCccccc
Q 040195 345 PDVIGELKNLQILSLFGNFLHGSIPSSLGN-----LTKLANLELSSNSLQGN----IPLSVGNCQNLIGFDASHITLTGA 415 (472)
Q Consensus 345 ~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~-----~~~L~~L~l~~~~~~~~----~~~~~~~~~~L~~L~ls~~~~~~~ 415 (472)
+..+..+++|++|++++|.+.+..+..+.. .++|++|++++|.+++. ++..+..+++|++|++++|.+.+.
T Consensus 277 ~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~ 356 (461)
T 1z7x_W 277 CRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDA 356 (461)
T ss_dssp HHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHH
T ss_pred HHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccc
Confidence 666777999999999999997655544443 26999999999999854 455677889999999999999865
Q ss_pred CChhhhh-----hcccceEEEcCCCcccc----cccccccCCCCCceEeccCCeeccc
Q 040195 416 LPQQLLS-----ITTLSLYLDLSHNLLNG----SLLLQVGNLKNLILLDISGNQFSGV 464 (472)
Q Consensus 416 ~~~~l~~-----~~~l~~~L~ls~n~l~~----~~~~~l~~~~~L~~L~L~~n~~~~~ 464 (472)
.+..+.. .++++ .|++++|++++ .++..+..+++|++|++++|++++.
T Consensus 357 ~~~~l~~~l~~~~~~L~-~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~i~~~ 413 (461)
T 1z7x_W 357 GVRELCQGLGQPGSVLR-VLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDA 413 (461)
T ss_dssp HHHHHHHHHTSTTCCCC-EEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCHH
T ss_pred cHHHHHHHHcCCCCceE-EEECCCCCCChhhHHHHHHHHHhCCCccEEECCCCCCCHH
Confidence 5555544 56888 99999999996 6788888999999999999999865
No 44
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.97 E-value=1.3e-29 Score=237.92 Aligned_cols=268 Identities=18% Similarity=0.212 Sum_probs=148.7
Q ss_pred CCcEEEccccCCCCCCCccccCCCCccEEEecCCccccccccccccCCCccEEEccCCccccccccccccChhhhcCCCC
Q 040195 135 KLQTLALYYNNLTGQLPDFVGNLSALQVIYIRGNSLGGKIPTTLGLLRNLVYLNVNENQFWYVSSFSGSLPFDILVNLPN 214 (472)
Q Consensus 135 ~L~~L~l~~~~i~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~ 214 (472)
++++|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+..+ +... .++
T Consensus 53 ~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l-------~~~~---~~~ 122 (330)
T 1xku_A 53 DTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKEL-------PEKM---PKT 122 (330)
T ss_dssp TCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCSBC-------CSSC---CTT
T ss_pred CCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCcCCcc-------Chhh---ccc
Confidence 444444444444433333444445555555555544443344445555555555555544222 1111 145
Q ss_pred ccEEEcccccccccCCccCcCCCCCCEEecCCCcccc--cccccccccCCCCeEEcCCCcCCCCCCCCcchhhhhcccCC
Q 040195 215 LKKLCIAENNFVGSIPDSLSNASNLELLELAGNQFEG--KVSIDFSSLKNLAVLNLERNNLGIGTANDLGFVTFLTNCSS 292 (472)
Q Consensus 215 L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~--~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~ 292 (472)
|++|++++|.+.+..+..+.++++|+.|++++|.+.. ..+..+..+++|++|++++|.+..
T Consensus 123 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~----------------- 185 (330)
T 1xku_A 123 LQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITT----------------- 185 (330)
T ss_dssp CCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCS-----------------
T ss_pred ccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCcccc-----------------
Confidence 5666666666555444556666777777777766643 334456667777777777766541
Q ss_pred CcCCchhhhccccccEEEeecccccCcccccccCccCcceEeccccccccCcchhhcCCCCCcEEEccCCcCccccccch
Q 040195 293 LKLPHSIANLSSTMTHFYIGGNQILGIIHFGIRNLVNLIALGMQSNQLHGTIPDVIGELKNLQILSLFGNFLHGSIPSSL 372 (472)
Q Consensus 293 l~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l 372 (472)
++. .+ .++|++|++++|.+.+..+..+..+++|++|++++|.+.+..+..+
T Consensus 186 --l~~-------------------------~~--~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~ 236 (330)
T 1xku_A 186 --IPQ-------------------------GL--PPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSL 236 (330)
T ss_dssp --CCS-------------------------SC--CTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTG
T ss_pred --CCc-------------------------cc--cccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhc
Confidence 110 00 1455555555555555555556666666666666666655555556
Q ss_pred hcccccCeeeccCCcccccCCcCccCCCCCceEeecCCcccccCChhhh------hhcccceEEEcCCCcccc--ccccc
Q 040195 373 GNLTKLANLELSSNSLQGNIPLSVGNCQNLIGFDASHITLTGALPQQLL------SITTLSLYLDLSHNLLNG--SLLLQ 444 (472)
Q Consensus 373 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ls~~~~~~~~~~~l~------~~~~l~~~L~ls~n~l~~--~~~~~ 444 (472)
..+++|++|++++|+++ .+|..+..+++|++|++++|++++..+..+. ....+. .+++++|++.. ..|..
T Consensus 237 ~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~-~l~l~~N~~~~~~i~~~~ 314 (330)
T 1xku_A 237 ANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYS-GVSLFSNPVQYWEIQPST 314 (330)
T ss_dssp GGSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCS-EEECCSSSSCGGGSCGGG
T ss_pred cCCCCCCEEECCCCcCc-cCChhhccCCCcCEEECCCCcCCccChhhcCCccccccccccc-ceEeecCcccccccCccc
Confidence 66666666666666666 5555666666666666666666632222232 124556 78888887753 45677
Q ss_pred ccCCCCCceEeccCCe
Q 040195 445 VGNLKNLILLDISGNQ 460 (472)
Q Consensus 445 l~~~~~L~~L~L~~n~ 460 (472)
|..+++++.++|++|+
T Consensus 315 f~~~~~l~~l~L~~N~ 330 (330)
T 1xku_A 315 FRCVYVRAAVQLGNYK 330 (330)
T ss_dssp GTTCCCGGGEEC----
T ss_pred cccccceeEEEecccC
Confidence 8888888888888874
No 45
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.97 E-value=1.2e-29 Score=238.34 Aligned_cols=288 Identities=19% Similarity=0.216 Sum_probs=170.5
Q ss_pred CCcEEEcccCcCcccCCccccCCCCCcEEEccccCCCCCCCccccCCCCccEEEecCCccccccccccccCCCccEEEcc
Q 040195 111 ELTHLRVANNKLEGQIPKEIGSLLKLQTLALYYNNLTGQLPDFVGNLSALQVIYIRGNSLGGKIPTTLGLLRNLVYLNVN 190 (472)
Q Consensus 111 ~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~i~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~ 190 (472)
+++.++++++.++ .+|..+. ++|++|++++|.+.+..+..+..+++|++|++++|.+++..+..+..+++|++|+++
T Consensus 34 ~l~~l~~~~~~l~-~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 110 (332)
T 2ft3_A 34 HLRVVQCSDLGLK-AVPKEIS--PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYIS 110 (332)
T ss_dssp ETTEEECCSSCCS-SCCSCCC--TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECC
T ss_pred cCCEEECCCCCcc-ccCCCCC--CCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECC
Confidence 3455555555554 3333332 455556666555554444455556666666666666655445556666666666666
Q ss_pred CCccccccccccccChhhhcCCCCccEEEcccccccccCCccCcCCCCCCEEecCCCcccc--cccccccccCCCCeEEc
Q 040195 191 ENQFWYVSSFSGSLPFDILVNLPNLKKLCIAENNFVGSIPDSLSNASNLELLELAGNQFEG--KVSIDFSSLKNLAVLNL 268 (472)
Q Consensus 191 ~~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~--~~~~~l~~l~~L~~L~l 268 (472)
+|.+..+ +...+ ++|++|++++|.+....+..+..+++|+.|++++|.++. ..+..+..+ +|++|++
T Consensus 111 ~n~l~~l-------~~~~~---~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l 179 (332)
T 2ft3_A 111 KNHLVEI-------PPNLP---SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRI 179 (332)
T ss_dssp SSCCCSC-------CSSCC---TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBC
T ss_pred CCcCCcc-------Ccccc---ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEEC
Confidence 6655322 21111 566666666666665555556677777777777776643 334445555 6777777
Q ss_pred CCCcCCCCCCCCcchhhhhcccCCCcCCchhhhccccccEEEeecccccCcccccccCccCcceEeccccccccCcchhh
Q 040195 269 ERNNLGIGTANDLGFVTFLTNCSSLKLPHSIANLSSTMTHFYIGGNQILGIIHFGIRNLVNLIALGMQSNQLHGTIPDVI 348 (472)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~ 348 (472)
++|.++. +|. .+ .++|++|++++|.+.+..+..+
T Consensus 180 ~~n~l~~-------------------l~~-------------------------~~--~~~L~~L~l~~n~i~~~~~~~l 213 (332)
T 2ft3_A 180 SEAKLTG-------------------IPK-------------------------DL--PETLNELHLDHNKIQAIELEDL 213 (332)
T ss_dssp CSSBCSS-------------------CCS-------------------------SS--CSSCSCCBCCSSCCCCCCTTSS
T ss_pred cCCCCCc-------------------cCc-------------------------cc--cCCCCEEECCCCcCCccCHHHh
Confidence 7666541 110 01 1456666666666665555556
Q ss_pred cCCCCCcEEEccCCcCccccccchhcccccCeeeccCCcccccCCcCccCCCCCceEeecCCcccccCChhhhh------
Q 040195 349 GELKNLQILSLFGNFLHGSIPSSLGNLTKLANLELSSNSLQGNIPLSVGNCQNLIGFDASHITLTGALPQQLLS------ 422 (472)
Q Consensus 349 ~~~~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ls~~~~~~~~~~~l~~------ 422 (472)
..+++|++|++++|.+.+..+..+..+++|++|++++|+++ .+|..+..+++|+.|++++|++++..+..+..
T Consensus 214 ~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~ 292 (332)
T 2ft3_A 214 LRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVK 292 (332)
T ss_dssp TTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCC-BCCTTGGGCTTCCEEECCSSCCCBCCTTSSSCSSCCSS
T ss_pred cCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCe-ecChhhhcCccCCEEECCCCCCCccChhHccccccccc
Confidence 66666666666666666555556666666777777777666 56666666777777777777666333333332
Q ss_pred hcccceEEEcCCCccc--ccccccccCCCCCceEeccCCe
Q 040195 423 ITTLSLYLDLSHNLLN--GSLLLQVGNLKNLILLDISGNQ 460 (472)
Q Consensus 423 ~~~l~~~L~ls~n~l~--~~~~~~l~~~~~L~~L~L~~n~ 460 (472)
...++ .|++++|++. +..+..|..+++|+.+++++|+
T Consensus 293 ~~~l~-~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 293 RAYYN-GISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK 331 (332)
T ss_dssp SCCBS-EEECCSSSSCGGGSCGGGGTTBCCSTTEEC----
T ss_pred ccccc-ceEeecCcccccccCcccccccchhhhhhccccc
Confidence 24466 8888888876 5667788888899999998875
No 46
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.97 E-value=6.5e-29 Score=233.21 Aligned_cols=289 Identities=19% Similarity=0.225 Sum_probs=210.9
Q ss_pred ceEEEECCCCccCcccCccccCCCCccEEeccCCcCccCcchhhhcCCCCCEEEccCcccCCCCCcccCCCCCCcEEEcc
Q 040195 39 RVTELDLSNQRIGGVLSPYVGNLSFLRYINLSDNGFHGEIPQEIGNLYRLEKLELSNNSFSGTIPTNLSRCSELTHLRVA 118 (472)
Q Consensus 39 ~l~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~ 118 (472)
+++.++++++.+...... + .+++++|++++|.+....+..+.++++|++|++++|.+.+..|..|..+++|++|+++
T Consensus 32 ~l~~l~~~~~~l~~lp~~-~--~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls 108 (330)
T 1xku_A 32 HLRVVQCSDLGLEKVPKD-L--PPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLS 108 (330)
T ss_dssp ETTEEECTTSCCCSCCCS-C--CTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECC
T ss_pred CCeEEEecCCCccccCcc-C--CCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECC
Confidence 567788888877654332 2 3688899999998887777788899999999999998887778888899999999999
Q ss_pred cCcCcccCCccccCCCCCcEEEccccCCCCCCCccccCCCCccEEEecCCcccc--ccccccccCCCccEEEccCCcccc
Q 040195 119 NNKLEGQIPKEIGSLLKLQTLALYYNNLTGQLPDFVGNLSALQVIYIRGNSLGG--KIPTTLGLLRNLVYLNVNENQFWY 196 (472)
Q Consensus 119 ~~~~~~~~~~~l~~l~~L~~L~l~~~~i~~~~~~~l~~~~~L~~L~l~~~~~~~--~~~~~l~~~~~L~~L~l~~~~l~~ 196 (472)
+|.++ ..+..+. ++|++|++++|.+.+..+..+..+++|++|++++|.+.. ..+..+..+++|++|++++|.+..
T Consensus 109 ~n~l~-~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~ 185 (330)
T 1xku_A 109 KNQLK-ELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITT 185 (330)
T ss_dssp SSCCS-BCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCS
T ss_pred CCcCC-ccChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCcccc
Confidence 99887 4555443 789999999988886666678888899999998888753 455677888888888888888744
Q ss_pred ccccccccChhhhcCCCCccEEEcccccccccCCccCcCCCCCCEEecCCCcccccccccccccCCCCeEEcCCCcCCCC
Q 040195 197 VSSFSGSLPFDILVNLPNLKKLCIAENNFVGSIPDSLSNASNLELLELAGNQFEGKVSIDFSSLKNLAVLNLERNNLGIG 276 (472)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~ 276 (472)
+. ... .++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+..
T Consensus 186 l~-------~~~---~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~- 254 (330)
T 1xku_A 186 IP-------QGL---PPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVK- 254 (330)
T ss_dssp CC-------SSC---CTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCSS-
T ss_pred CC-------ccc---cccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCcc-
Confidence 32 221 2678888888888877767778888888888888888876666677777778888777776641
Q ss_pred CCCCcchhhhhcccCCCcCCchhhhccccccEEEeecccccCcccccccCccCcceEeccccccccCcchhhcC------
Q 040195 277 TANDLGFVTFLTNCSSLKLPHSIANLSSTMTHFYIGGNQILGIIHFGIRNLVNLIALGMQSNQLHGTIPDVIGE------ 350 (472)
Q Consensus 277 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~------ 350 (472)
.+..+..+++|++|++++|.+.+..+..|..
T Consensus 255 -------------------------------------------lp~~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~ 291 (330)
T 1xku_A 255 -------------------------------------------VPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTK 291 (330)
T ss_dssp -------------------------------------------CCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTT
T ss_pred -------------------------------------------CChhhccCCCcCEEECCCCcCCccChhhcCCcccccc
Confidence 1223455566666666666666554444432
Q ss_pred CCCCcEEEccCCcCcc--ccccchhcccccCeeeccCCc
Q 040195 351 LKNLQILSLFGNFLHG--SIPSSLGNLTKLANLELSSNS 387 (472)
Q Consensus 351 ~~~L~~L~L~~n~l~~--~~~~~l~~~~~L~~L~l~~~~ 387 (472)
.+.++.|++++|++.. ..+..+..++.++.+++++|+
T Consensus 292 ~~~l~~l~l~~N~~~~~~i~~~~f~~~~~l~~l~L~~N~ 330 (330)
T 1xku_A 292 KASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNYK 330 (330)
T ss_dssp SCCCSEEECCSSSSCGGGSCGGGGTTCCCGGGEEC----
T ss_pred cccccceEeecCcccccccCccccccccceeEEEecccC
Confidence 3677788888887753 345567777888888887764
No 47
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.97 E-value=5.7e-29 Score=233.75 Aligned_cols=288 Identities=21% Similarity=0.234 Sum_probs=191.6
Q ss_pred ceEEEECCCCccCcccCccccCCCCccEEeccCCcCccCcchhhhcCCCCCEEEccCcccCCCCCcccCCCCCCcEEEcc
Q 040195 39 RVTELDLSNQRIGGVLSPYVGNLSFLRYINLSDNGFHGEIPQEIGNLYRLEKLELSNNSFSGTIPTNLSRCSELTHLRVA 118 (472)
Q Consensus 39 ~l~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~ 118 (472)
+++.++++++.+...... + .+++++|++++|.+....+..+.++++|++|++++|.+.+..+..|.++++|++|+++
T Consensus 34 ~l~~l~~~~~~l~~ip~~-~--~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 110 (332)
T 2ft3_A 34 HLRVVQCSDLGLKAVPKE-I--SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYIS 110 (332)
T ss_dssp ETTEEECCSSCCSSCCSC-C--CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECC
T ss_pred cCCEEECCCCCccccCCC-C--CCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECC
Confidence 456777777777544332 2 3577888888887776666677788888888888887776667777778888888888
Q ss_pred cCcCcccCCccccCCCCCcEEEccccCCCCCCCccccCCCCccEEEecCCcccc--ccccccccCCCccEEEccCCcccc
Q 040195 119 NNKLEGQIPKEIGSLLKLQTLALYYNNLTGQLPDFVGNLSALQVIYIRGNSLGG--KIPTTLGLLRNLVYLNVNENQFWY 196 (472)
Q Consensus 119 ~~~~~~~~~~~l~~l~~L~~L~l~~~~i~~~~~~~l~~~~~L~~L~l~~~~~~~--~~~~~l~~~~~L~~L~l~~~~l~~ 196 (472)
+|.++ ..+..+. ++|++|++++|.+....+..+..+++|++|++++|.++. ..+..+..+ +|++|++++|.+..
T Consensus 111 ~n~l~-~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~~ 186 (332)
T 2ft3_A 111 KNHLV-EIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLTG 186 (332)
T ss_dssp SSCCC-SCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCSS
T ss_pred CCcCC-ccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCCCc
Confidence 87777 4444443 677888888777775555567777777777777777642 344555555 77777777777643
Q ss_pred ccccccccChhhhcCCCCccEEEcccccccccCCccCcCCCCCCEEecCCCcccccccccccccCCCCeEEcCCCcCCCC
Q 040195 197 VSSFSGSLPFDILVNLPNLKKLCIAENNFVGSIPDSLSNASNLELLELAGNQFEGKVSIDFSSLKNLAVLNLERNNLGIG 276 (472)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~ 276 (472)
++ ... .++|++|++++|.+++..+..+..+++|+.|++++|.+++..+..+..+++|++|++++|.+.
T Consensus 187 l~-------~~~---~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-- 254 (332)
T 2ft3_A 187 IP-------KDL---PETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-- 254 (332)
T ss_dssp CC-------SSS---CSSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCC--
T ss_pred cC-------ccc---cCCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCe--
Confidence 32 211 156677777777766655566666777777777777666555555666666666666666553
Q ss_pred CCCCcchhhhhcccCCCcCCchhhhccccccEEEeecccccCcccccccCccCcceEeccccccccCcchhhcC------
Q 040195 277 TANDLGFVTFLTNCSSLKLPHSIANLSSTMTHFYIGGNQILGIIHFGIRNLVNLIALGMQSNQLHGTIPDVIGE------ 350 (472)
Q Consensus 277 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~------ 350 (472)
. .+..+..+++|+.|++++|.+++..+..|..
T Consensus 255 -----------------------------------------~-lp~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~ 292 (332)
T 2ft3_A 255 -----------------------------------------R-VPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVK 292 (332)
T ss_dssp -----------------------------------------B-CCTTGGGCTTCCEEECCSSCCCBCCTTSSSCSSCCSS
T ss_pred -----------------------------------------e-cChhhhcCccCCEEECCCCCCCccChhHccccccccc
Confidence 1 2233556677777777777777655555543
Q ss_pred CCCCcEEEccCCcCc--cccccchhcccccCeeeccCCc
Q 040195 351 LKNLQILSLFGNFLH--GSIPSSLGNLTKLANLELSSNS 387 (472)
Q Consensus 351 ~~~L~~L~L~~n~l~--~~~~~~l~~~~~L~~L~l~~~~ 387 (472)
.+.|+.|++++|++. +..+..+..+++|+.+++++|+
T Consensus 293 ~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 293 RAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK 331 (332)
T ss_dssp SCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC----
T ss_pred cccccceEeecCcccccccCcccccccchhhhhhccccc
Confidence 366888888888876 4566677788888888888774
No 48
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.96 E-value=7.5e-29 Score=230.46 Aligned_cols=205 Identities=29% Similarity=0.433 Sum_probs=144.7
Q ss_pred cCCCCccEEEcccccccccCCccCcCCCCCCEEecCCCcccccccccccccCCCCeEEcCCCcCCCCCCCCcchhhhhcc
Q 040195 210 VNLPNLKKLCIAENNFVGSIPDSLSNASNLELLELAGNQFEGKVSIDFSSLKNLAVLNLERNNLGIGTANDLGFVTFLTN 289 (472)
Q Consensus 210 ~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~ 289 (472)
..+++|++|++++|.+++..|..+.++++|++|++++|.+++..+..+..+++|++|++++|.+.
T Consensus 98 ~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~--------------- 162 (313)
T 1ogq_A 98 AKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRIS--------------- 162 (313)
T ss_dssp GGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCE---------------
T ss_pred hcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCccc---------------
Confidence 34455555555555555555556666666777777766666555556666666666666665542
Q ss_pred cCCCcCCchhhhccccccEEEeecccccCcccccccCcc-CcceEeccccccccCcchhhcCCCCCcEEEccCCcCcccc
Q 040195 290 CSSLKLPHSIANLSSTMTHFYIGGNQILGIIHFGIRNLV-NLIALGMQSNQLHGTIPDVIGELKNLQILSLFGNFLHGSI 368 (472)
Q Consensus 290 ~~~l~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~l~~~~-~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~L~~n~l~~~~ 368 (472)
...+..+..++ +|++|++++|.+.+..|..+..++ |++|++++|.+.+..
T Consensus 163 ----------------------------~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~l~~~~ 213 (313)
T 1ogq_A 163 ----------------------------GAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGDA 213 (313)
T ss_dssp ----------------------------EECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSEEEECC
T ss_pred ----------------------------CcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCcccCcC
Confidence 12233344554 677777777777766666676666 888888888777777
Q ss_pred ccchhcccccCeeeccCCcccccCCcCccCCCCCceEeecCCcccccCChhhhhhcccceEEEcCCCcccccccccccCC
Q 040195 369 PSSLGNLTKLANLELSSNSLQGNIPLSVGNCQNLIGFDASHITLTGALPQQLLSITTLSLYLDLSHNLLNGSLLLQVGNL 448 (472)
Q Consensus 369 ~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ls~~~~~~~~~~~l~~~~~l~~~L~ls~n~l~~~~~~~l~~~ 448 (472)
+..+..+++|++|++++|.+++.++. +..+++|++|++++|.+++.+|..+..+++++ .|++++|++++.+|.. ..+
T Consensus 214 ~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~-~L~Ls~N~l~~~ip~~-~~l 290 (313)
T 1ogq_A 214 SVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLH-SLNVSFNNLCGEIPQG-GNL 290 (313)
T ss_dssp GGGCCTTSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCC-EEECCSSEEEEECCCS-TTG
T ss_pred CHHHhcCCCCCEEECCCCceeeecCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCC-EEECcCCcccccCCCC-ccc
Confidence 77777788888888888887755544 66778888888888888877888888888888 8888888888777765 778
Q ss_pred CCCceEeccCCee
Q 040195 449 KNLILLDISGNQF 461 (472)
Q Consensus 449 ~~L~~L~L~~n~~ 461 (472)
++|+.+++++|+.
T Consensus 291 ~~L~~l~l~~N~~ 303 (313)
T 1ogq_A 291 QRFDVSAYANNKC 303 (313)
T ss_dssp GGSCGGGTCSSSE
T ss_pred cccChHHhcCCCC
Confidence 8888889998884
No 49
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.95 E-value=6.3e-28 Score=225.52 Aligned_cols=252 Identities=20% Similarity=0.319 Sum_probs=219.2
Q ss_pred CCCCCCCCC----CCCCCcccccceeeC--------CCCCceEEEECCCCccCcccCccccCCCCccEEeccCCcCccCc
Q 040195 11 DPSGVTSSW----NNTINLCQWMGVTCG--------HRHQRVTELDLSNQRIGGVLSPYVGNLSFLRYINLSDNGFHGEI 78 (472)
Q Consensus 11 ~~~~~~~~~----~~~~~~~~~~~~~~~--------~~~~~l~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~ 78 (472)
|+.+..+.| .....+|.|.|+.|. ....+++.|+++++.+. ..+..+.++++|++|++++|.+. .+
T Consensus 42 ~~~~~~~~w~~~~~~~~~~~~~~g~~~~~~~~~l~~~~~~~l~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~n~l~-~l 119 (328)
T 4fcg_A 42 DRNRWHSAWRQANSNNPQIETRTGRALKATADLLEDATQPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-EL 119 (328)
T ss_dssp CCTTHHHHHHHHTTTCTTSCCSHHHHHHHHHHHHHHHTSTTCCEEEEESSCCS-SCCSCGGGGTTCSEEEEESSCCC-CC
T ss_pred CchhhhhhhcccccccccccccCCcchhhhHHHHhcccccceeEEEccCCCch-hcChhhhhCCCCCEEECCCCCcc-ch
Confidence 444556778 567789999999983 34588999999999997 45566888999999999999998 78
Q ss_pred chhhhcCCCCCEEEccCcccCCCCCcccCCCCCCcEEEcccCcCcccCCccccC---------CCCCcEEEccccCCCCC
Q 040195 79 PQEIGNLYRLEKLELSNNSFSGTIPTNLSRCSELTHLRVANNKLEGQIPKEIGS---------LLKLQTLALYYNNLTGQ 149 (472)
Q Consensus 79 ~~~~~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~---------l~~L~~L~l~~~~i~~~ 149 (472)
|..+.++++|++|++++|.+. .+|..+..+++|++|++++|...+..|..+.. +++|++|++++|.++ .
T Consensus 120 p~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-~ 197 (328)
T 4fcg_A 120 PDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-S 197 (328)
T ss_dssp CSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC-C
T ss_pred hHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcC-c
Confidence 888999999999999999998 77888999999999999998877677776654 999999999999998 7
Q ss_pred CCccccCCCCccEEEecCCccccccccccccCCCccEEEccCCccccccccccccChhhhcCCCCccEEEcccccccccC
Q 040195 150 LPDFVGNLSALQVIYIRGNSLGGKIPTTLGLLRNLVYLNVNENQFWYVSSFSGSLPFDILVNLPNLKKLCIAENNFVGSI 229 (472)
Q Consensus 150 ~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~ 229 (472)
+|..+..+++|++|++++|.++ ..+..+..+++|++|++++|.+. +.++ ..+..+++|+.|++++|.+.+.+
T Consensus 198 lp~~l~~l~~L~~L~L~~N~l~-~l~~~l~~l~~L~~L~Ls~n~~~------~~~p-~~~~~l~~L~~L~L~~n~~~~~~ 269 (328)
T 4fcg_A 198 LPASIANLQNLKSLKIRNSPLS-ALGPAIHHLPKLEELDLRGCTAL------RNYP-PIFGGRAPLKRLILKDCSNLLTL 269 (328)
T ss_dssp CCGGGGGCTTCCEEEEESSCCC-CCCGGGGGCTTCCEEECTTCTTC------CBCC-CCTTCCCCCCEEECTTCTTCCBC
T ss_pred chHhhcCCCCCCEEEccCCCCC-cCchhhccCCCCCEEECcCCcch------hhhH-HHhcCCCCCCEEECCCCCchhhc
Confidence 8888999999999999999998 46667899999999999998753 2233 34668899999999999998889
Q ss_pred CccCcCCCCCCEEecCCCcccccccccccccCCCCeEEcCCCcCC
Q 040195 230 PDSLSNASNLELLELAGNQFEGKVSIDFSSLKNLAVLNLERNNLG 274 (472)
Q Consensus 230 ~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 274 (472)
|..+..+++|+.|++++|.+.+..+..+..+++++.+.+..+.+.
T Consensus 270 p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~~~~ 314 (328)
T 4fcg_A 270 PLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQA 314 (328)
T ss_dssp CTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGGGSC
T ss_pred chhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHHHHH
Confidence 989999999999999999998899999999999999999877654
No 50
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.95 E-value=3e-30 Score=262.14 Aligned_cols=379 Identities=16% Similarity=0.093 Sum_probs=199.4
Q ss_pred CCCCccEEeccCCcCccCcchhhhc-CCC-CCEEEccCcc-cCC-CCCcccCCCCCCcEEEcccCcCcccC----Ccccc
Q 040195 60 NLSFLRYINLSDNGFHGEIPQEIGN-LYR-LEKLELSNNS-FSG-TIPTNLSRCSELTHLRVANNKLEGQI----PKEIG 131 (472)
Q Consensus 60 ~~~~L~~L~L~~~~~~~~~~~~~~~-l~~-L~~L~L~~~~-~~~-~~~~~l~~l~~L~~L~l~~~~~~~~~----~~~l~ 131 (472)
.+++|++|+|+++.+.+..+..+.. ++. |++|++++|. +.. ..+.....+++|++|++++|.+++.. +....
T Consensus 110 ~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~ 189 (592)
T 3ogk_B 110 NLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQ 189 (592)
T ss_dssp HCTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHH
T ss_pred hCCCCCeEEeeccEecHHHHHHHHHhccccCcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHh
Confidence 4555666666655544333333333 233 6666665553 110 01111234555666666655544221 11233
Q ss_pred CCCCCcEEEccccCCCC----CCCccccCCCCccEEEecCCccccccccccccCCCccEEEccCCccccccccccccChh
Q 040195 132 SLLKLQTLALYYNNLTG----QLPDFVGNLSALQVIYIRGNSLGGKIPTTLGLLRNLVYLNVNENQFWYVSSFSGSLPFD 207 (472)
Q Consensus 132 ~l~~L~~L~l~~~~i~~----~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~ 207 (472)
.+++|++|+++++.+.+ .++..+..+++|++|++++|.+.+ .+..+..+++|++|+++....... ......
T Consensus 190 ~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~-l~~~~~~~~~L~~L~l~~~~~~~~----~~~~~~ 264 (592)
T 3ogk_B 190 HNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILE-LVGFFKAAANLEEFCGGSLNEDIG----MPEKYM 264 (592)
T ss_dssp HCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGG-GHHHHHHCTTCCEEEECBCCCCTT----CTTSSS
T ss_pred cCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHH-HHHHHhhhhHHHhhcccccccccc----hHHHHH
Confidence 45556666665555541 122223345556666666555542 344455555566555553211000 000011
Q ss_pred hhcCCCCccEEEcccccccccCCccCcCCCCCCEEecCCCccccccc-ccccccCCCCeEEcCCCcCCCCCCCCcchhhh
Q 040195 208 ILVNLPNLKKLCIAENNFVGSIPDSLSNASNLELLELAGNQFEGKVS-IDFSSLKNLAVLNLERNNLGIGTANDLGFVTF 286 (472)
Q Consensus 208 ~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~-~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~ 286 (472)
.+..+++|+.+.+.++.. ..++..+..+++|++|++++|.+++... ..+..+++|++|+++ +.+...
T Consensus 265 ~l~~~~~L~~L~l~~~~~-~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~-~~~~~~---------- 332 (592)
T 3ogk_B 265 NLVFPRKLCRLGLSYMGP-NEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETR-NVIGDR---------- 332 (592)
T ss_dssp CCCCCTTCCEEEETTCCT-TTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEE-GGGHHH----------
T ss_pred HhhccccccccCccccch-hHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEecc-CccCHH----------
Confidence 223445555555554322 1233444455555666665555433222 123455555555555 222110
Q ss_pred hcccCCCcCCchhhhccccccEEEeec-----------ccccCccc-ccccCccCcceEeccccccccCcchhhcC-CCC
Q 040195 287 LTNCSSLKLPHSIANLSSTMTHFYIGG-----------NQILGIIH-FGIRNLVNLIALGMQSNQLHGTIPDVIGE-LKN 353 (472)
Q Consensus 287 ~~~~~~l~~~~~~~~~~~~l~~l~l~~-----------~~~~~~~~-~~l~~~~~L~~L~l~~~~i~~~~~~~~~~-~~~ 353 (472)
....+....++|++|++++ +.++.... .....+++|++|+++.+.+++..+..+.. +++
T Consensus 333 --------~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~ 404 (592)
T 3ogk_B 333 --------GLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKN 404 (592)
T ss_dssp --------HHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCS
T ss_pred --------HHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCC
Confidence 0011122334788888883 34443222 22345788888888777777666555554 788
Q ss_pred CcEEEcc----CCcCccc-----cccchhcccccCeeeccCCc--ccccCCcCc-cCCCCCceEeecCCcccc-cCChhh
Q 040195 354 LQILSLF----GNFLHGS-----IPSSLGNLTKLANLELSSNS--LQGNIPLSV-GNCQNLIGFDASHITLTG-ALPQQL 420 (472)
Q Consensus 354 L~~L~L~----~n~l~~~-----~~~~l~~~~~L~~L~l~~~~--~~~~~~~~~-~~~~~L~~L~ls~~~~~~-~~~~~l 420 (472)
|++|+++ .+.+++. ++..+..+++|++|+++.|. +++.....+ ..+++|++|++++|.+++ .++..+
T Consensus 405 L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~ 484 (592)
T 3ogk_B 405 LCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFS 484 (592)
T ss_dssp CCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHH
T ss_pred CcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHH
Confidence 8888886 4556542 33345667888888887554 443333223 347888888888888764 234445
Q ss_pred hhhcccceEEEcCCCccccc-ccccccCCCCCceEeccCCeeccc
Q 040195 421 LSITTLSLYLDLSHNLLNGS-LLLQVGNLKNLILLDISGNQFSGV 464 (472)
Q Consensus 421 ~~~~~l~~~L~ls~n~l~~~-~~~~l~~~~~L~~L~L~~n~~~~~ 464 (472)
..+++|+ .|++++|.+++. .+.....+++|+.|+|++|++++.
T Consensus 485 ~~~~~L~-~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~it~~ 528 (592)
T 3ogk_B 485 RGCPNLQ-KLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRASMT 528 (592)
T ss_dssp TCCTTCC-EEEEESCCCBHHHHHHHHHHCSSCCEEEEESCBCCTT
T ss_pred hcCcccC-eeeccCCCCcHHHHHHHHHhcCccCeeECcCCcCCHH
Confidence 6677788 888888887654 333445678888888888887765
No 51
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.95 E-value=1.7e-29 Score=256.71 Aligned_cols=395 Identities=12% Similarity=0.057 Sum_probs=283.2
Q ss_pred CCCceEEEECCCCccCcccCccccC-CCC-ccEEeccCCcC-cc-CcchhhhcCCCCCEEEccCcccCCCCC----cccC
Q 040195 36 RHQRVTELDLSNQRIGGVLSPYVGN-LSF-LRYINLSDNGF-HG-EIPQEIGNLYRLEKLELSNNSFSGTIP----TNLS 107 (472)
Q Consensus 36 ~~~~l~~L~l~~~~~~~~~~~~l~~-~~~-L~~L~L~~~~~-~~-~~~~~~~~l~~L~~L~L~~~~~~~~~~----~~l~ 107 (472)
.++++++|+++++.+.+.....+.. +++ |++|++++|.. .. ..+.....+++|++|++++|.+.+... ..+.
T Consensus 110 ~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~ 189 (592)
T 3ogk_B 110 NLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQ 189 (592)
T ss_dssp HCTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHH
T ss_pred hCCCCCeEEeeccEecHHHHHHHHHhccccCcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHh
Confidence 4588999999999887765555555 444 99999999862 21 122334589999999999998865532 2346
Q ss_pred CCCCCcEEEcccCcCcc----cCCccccCCCCCcEEEccccCCCCCCCccccCCCCccEEEecCCccc---ccccccccc
Q 040195 108 RCSELTHLRVANNKLEG----QIPKEIGSLLKLQTLALYYNNLTGQLPDFVGNLSALQVIYIRGNSLG---GKIPTTLGL 180 (472)
Q Consensus 108 ~l~~L~~L~l~~~~~~~----~~~~~l~~l~~L~~L~l~~~~i~~~~~~~l~~~~~L~~L~l~~~~~~---~~~~~~l~~ 180 (472)
.+++|++|+++++.++. .++..+.++++|++|++++|.+. ..+..+..+++|++|.++..... ......+..
T Consensus 190 ~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~-~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~ 268 (592)
T 3ogk_B 190 HNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEIL-ELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVF 268 (592)
T ss_dssp HCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGG-GGHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCC
T ss_pred cCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHH-HHHHHHhhhhHHHhhcccccccccchHHHHHHhhc
Confidence 78999999999998862 33444667899999999999887 46788889999999999864322 233456678
Q ss_pred CCCccEEEccCCccccccccccccChhhhcCCCCccEEEcccccccccCC-ccCcCCCCCCEEecCCCcccccccc-ccc
Q 040195 181 LRNLVYLNVNENQFWYVSSFSGSLPFDILVNLPNLKKLCIAENNFVGSIP-DSLSNASNLELLELAGNQFEGKVSI-DFS 258 (472)
Q Consensus 181 ~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~-~~l~~~~~L~~L~l~~~~~~~~~~~-~l~ 258 (472)
+++|+.++++++... .+ ...+..+++|++|++++|.++.... ..+..+++|++|+++ +.+.+.... ...
T Consensus 269 ~~~L~~L~l~~~~~~-------~l-~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~-~~~~~~~l~~~~~ 339 (592)
T 3ogk_B 269 PRKLCRLGLSYMGPN-------EM-PILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETR-NVIGDRGLEVLAQ 339 (592)
T ss_dssp CTTCCEEEETTCCTT-------TG-GGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEE-GGGHHHHHHHHHH
T ss_pred cccccccCccccchh-------HH-HHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEecc-CccCHHHHHHHHH
Confidence 899999999876421 22 2345578899999999998764322 346789999999999 444433333 346
Q ss_pred ccCCCCeEEcCC-----------CcCCCCCCCCcchhhhhcccCCCcCCchhhhccccccEEEeecccccCcccccccC-
Q 040195 259 SLKNLAVLNLER-----------NNLGIGTANDLGFVTFLTNCSSLKLPHSIANLSSTMTHFYIGGNQILGIIHFGIRN- 326 (472)
Q Consensus 259 ~l~~L~~L~l~~-----------~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~l~~- 326 (472)
.+++|++|++++ +.++..+ + ..+....++|+.|++..+.++......+..
T Consensus 340 ~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~-----------------~-~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~ 401 (592)
T 3ogk_B 340 YCKQLKRLRIERGADEQGMEDEEGLVSQRG-----------------L-IALAQGCQELEYMAVYVSDITNESLESIGTY 401 (592)
T ss_dssp HCTTCCEEEEECCCCSSTTSSTTCCCCHHH-----------------H-HHHHHHCTTCSEEEEEESCCCHHHHHHHHHH
T ss_pred hCCCCCEEEeecCccccccccccCccCHHH-----------------H-HHHHhhCccCeEEEeecCCccHHHHHHHHhh
Confidence 789999999994 2332110 0 111223458999999888887765555655
Q ss_pred ccCcceEecc----ccccccC-----cchhhcCCCCCcEEEccCCc--Cccccccchh-cccccCeeeccCCccccc-CC
Q 040195 327 LVNLIALGMQ----SNQLHGT-----IPDVIGELKNLQILSLFGNF--LHGSIPSSLG-NLTKLANLELSSNSLQGN-IP 393 (472)
Q Consensus 327 ~~~L~~L~l~----~~~i~~~-----~~~~~~~~~~L~~L~L~~n~--l~~~~~~~l~-~~~~L~~L~l~~~~~~~~-~~ 393 (472)
+++|+.|+++ .+.+++. .+..+..+++|++|+++.|. +++.....+. .+++|++|++++|++++. ++
T Consensus 402 ~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~ 481 (592)
T 3ogk_B 402 LKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLM 481 (592)
T ss_dssp CCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHH
T ss_pred CCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHH
Confidence 8999999997 4566643 33346678999999998654 5555444444 489999999999998853 34
Q ss_pred cCccCCCCCceEeecCCccccc-CChhhhhhcccceEEEcCCCccccccccccc-CCCCCceEeccCC
Q 040195 394 LSVGNCQNLIGFDASHITLTGA-LPQQLLSITTLSLYLDLSHNLLNGSLLLQVG-NLKNLILLDISGN 459 (472)
Q Consensus 394 ~~~~~~~~L~~L~ls~~~~~~~-~~~~l~~~~~l~~~L~ls~n~l~~~~~~~l~-~~~~L~~L~L~~n 459 (472)
..+..+++|++|++++|.+++. ++.....+++|+ .|++++|++++.....+. .++.+....+..+
T Consensus 482 ~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~-~L~ls~n~it~~~~~~l~~~~p~l~~~~~~~~ 548 (592)
T 3ogk_B 482 EFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLR-YLWVQGYRASMTGQDLMQMARPYWNIELIPSR 548 (592)
T ss_dssp HHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCC-EEEEESCBCCTTCTTGGGGCCTTEEEEEECCC
T ss_pred HHHhcCcccCeeeccCCCCcHHHHHHHHHhcCccC-eeECcCCcCCHHHHHHHHHhCCCcEEEEecCc
Confidence 4557889999999999998754 334456789999 999999999876554443 5566666655544
No 52
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.95 E-value=7.3e-27 Score=221.28 Aligned_cols=281 Identities=18% Similarity=0.147 Sum_probs=173.8
Q ss_pred CCCCcEEEccccCCCCCCCccccCCCCccEEEecCCccccccccccccCCCccEEEccCCccccccccccccChhhhcCC
Q 040195 133 LLKLQTLALYYNNLTGQLPDFVGNLSALQVIYIRGNSLGGKIPTTLGLLRNLVYLNVNENQFWYVSSFSGSLPFDILVNL 212 (472)
Q Consensus 133 l~~L~~L~l~~~~i~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~ 212 (472)
++.....+++++.++ .+|..+. ++|++|++++|.+++..+..+..+++|++|++++|.+.. ++...+..+
T Consensus 30 C~~~~~c~~~~~~l~-~iP~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~-------~~~~~~~~l 99 (353)
T 2z80_A 30 CDRNGICKGSSGSLN-SIPSGLT--EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINT-------IEEDSFSSL 99 (353)
T ss_dssp ECTTSEEECCSTTCS-SCCTTCC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCE-------ECTTTTTTC
T ss_pred CCCCeEeeCCCCCcc-ccccccc--ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCc-------cCHhhcCCC
Confidence 444555666666666 4454333 467777777777665444456666666666666665522 222334455
Q ss_pred CCccEEEcccccccccCCccCcCCCCCCEEecCCCccccccc-ccccccCCCCeEEcCCCcCCCCCCCCcchhhhhcccC
Q 040195 213 PNLKKLCIAENNFVGSIPDSLSNASNLELLELAGNQFEGKVS-IDFSSLKNLAVLNLERNNLGIGTANDLGFVTFLTNCS 291 (472)
Q Consensus 213 ~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~-~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~ 291 (472)
++|++|++++|.+++..+..++++++|++|++++|.++.... ..+..+++|++|++++|.
T Consensus 100 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~------------------- 160 (353)
T 2z80_A 100 GSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMD------------------- 160 (353)
T ss_dssp TTCCEEECCSSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESS-------------------
T ss_pred CCCCEEECCCCcCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCc-------------------
Confidence 555555555555554333335555555555555555543322 234444444444444442
Q ss_pred CCcCCchhhhccccccEEEeecccccCcccccccCccCcceEeccccccccCcchhhcCCCCCcEEEccCCcCccccccc
Q 040195 292 SLKLPHSIANLSSTMTHFYIGGNQILGIIHFGIRNLVNLIALGMQSNQLHGTIPDVIGELKNLQILSLFGNFLHGSIPSS 371 (472)
Q Consensus 292 ~l~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~ 371 (472)
.+....+..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+.......
T Consensus 161 -----------------------~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~ 217 (353)
T 2z80_A 161 -----------------------TFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIF 217 (353)
T ss_dssp -----------------------SCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCSTTHHHHH
T ss_pred -----------------------cccccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCccccchhhh
Confidence 234444455667777788888877777666777777788888888888776433333
Q ss_pred hhcccccCeeeccCCcccccCCcCc---cCCCCCceEeecCCcccc----cCChhhhhhcccceEEEcCCCccccccccc
Q 040195 372 LGNLTKLANLELSSNSLQGNIPLSV---GNCQNLIGFDASHITLTG----ALPQQLLSITTLSLYLDLSHNLLNGSLLLQ 444 (472)
Q Consensus 372 l~~~~~L~~L~l~~~~~~~~~~~~~---~~~~~L~~L~ls~~~~~~----~~~~~l~~~~~l~~~L~ls~n~l~~~~~~~ 444 (472)
+..+++|++|++++|.+++..+..+ ...+.++.++++++.+.+ .+|..+..+++++ .|++++|+++......
T Consensus 218 ~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~-~L~Ls~N~l~~i~~~~ 296 (353)
T 2z80_A 218 VDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLL-ELEFSRNQLKSVPDGI 296 (353)
T ss_dssp HHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCC-EEECCSSCCCCCCTTT
T ss_pred hhhcccccEEECCCCccccccccccccccccchhhccccccccccCcchhhhHHHHhcccCCC-EEECCCCCCCccCHHH
Confidence 4457788888888887774333222 235677788888877763 3566777888888 8999999888544444
Q ss_pred ccCCCCCceEeccCCeeccccC
Q 040195 445 VGNLKNLILLDISGNQFSGVIP 466 (472)
Q Consensus 445 l~~~~~L~~L~L~~n~~~~~~p 466 (472)
|..+++|+.|++++|+++...|
T Consensus 297 ~~~l~~L~~L~L~~N~~~~~~~ 318 (353)
T 2z80_A 297 FDRLTSLQKIWLHTNPWDCSCP 318 (353)
T ss_dssp TTTCTTCCEEECCSSCBCCCHH
T ss_pred HhcCCCCCEEEeeCCCccCcCC
Confidence 6888899999999998875543
No 53
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.94 E-value=1.5e-26 Score=219.08 Aligned_cols=204 Identities=23% Similarity=0.267 Sum_probs=119.7
Q ss_pred CCCccEEeccCCcCccCcchhhhcCCCCCEEEccCcccCCCCCcccCCCCCCcEEEcccCcCcccCCccccCCCCCcEEE
Q 040195 61 LSFLRYINLSDNGFHGEIPQEIGNLYRLEKLELSNNSFSGTIPTNLSRCSELTHLRVANNKLEGQIPKEIGSLLKLQTLA 140 (472)
Q Consensus 61 ~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~ 140 (472)
++.....+.+++.++ .+|..+. ++|++|++++|.+.+..+..+.++++|++|++++|.++...+..+.++++|++|+
T Consensus 30 C~~~~~c~~~~~~l~-~iP~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 106 (353)
T 2z80_A 30 CDRNGICKGSSGSLN-SIPSGLT--EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLD 106 (353)
T ss_dssp ECTTSEEECCSTTCS-SCCTTCC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEE
T ss_pred CCCCeEeeCCCCCcc-ccccccc--ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEE
Confidence 344445666666666 3343332 4677777777777655455667777777777777777655556677777777777
Q ss_pred ccccCCCCCCCccccCCCCccEEEecCCccccccc-cccccCCCccEEEccCCc-cccccccccccChhhhcCCCCccEE
Q 040195 141 LYYNNLTGQLPDFVGNLSALQVIYIRGNSLGGKIP-TTLGLLRNLVYLNVNENQ-FWYVSSFSGSLPFDILVNLPNLKKL 218 (472)
Q Consensus 141 l~~~~i~~~~~~~l~~~~~L~~L~l~~~~~~~~~~-~~l~~~~~L~~L~l~~~~-l~~~~~~~~~~~~~~~~~~~~L~~L 218 (472)
+++|.+++..+..+..+++|++|++++|.++.... ..+..+++|++|++++|. + ..++...+..+++|++|
T Consensus 107 Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~-------~~~~~~~~~~l~~L~~L 179 (353)
T 2z80_A 107 LSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTF-------TKIQRKDFAGLTFLEEL 179 (353)
T ss_dssp CCSSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSC-------CEECTTTTTTCCEEEEE
T ss_pred CCCCcCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccc-------cccCHHHccCCCCCCEE
Confidence 77777764434446667777777777776663322 355666666666666663 3 22333344455666666
Q ss_pred EcccccccccCCccCcCCCCCCEEecCCCcccccccccccccCCCCeEEcCCCcCC
Q 040195 219 CIAENNFVGSIPDSLSNASNLELLELAGNQFEGKVSIDFSSLKNLAVLNLERNNLG 274 (472)
Q Consensus 219 ~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 274 (472)
++++|.+.+..+..+..+++|++|++++|.+.......+..+++|+.|++++|.+.
T Consensus 180 ~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~ 235 (353)
T 2z80_A 180 EIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLD 235 (353)
T ss_dssp EEEETTCCEECTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCT
T ss_pred ECCCCCcCccCHHHHhccccCCeecCCCCccccchhhhhhhcccccEEECCCCccc
Confidence 66666665555555555666666666665554333323334455555555555443
No 54
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.94 E-value=3.5e-26 Score=212.26 Aligned_cols=242 Identities=24% Similarity=0.309 Sum_probs=209.3
Q ss_pred ccccceeeCC---------CCCceEEEECCCCccCcccCccccCCCCccEEeccCCcCccC--cchhhhcCCCCCEEEcc
Q 040195 26 CQWMGVTCGH---------RHQRVTELDLSNQRIGGVLSPYVGNLSFLRYINLSDNGFHGE--IPQEIGNLYRLEKLELS 94 (472)
Q Consensus 26 ~~~~~~~~~~---------~~~~l~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~--~~~~~~~l~~L~~L~L~ 94 (472)
|.|.++.|.. ..+++++|+++++.+.......+.++++|++|++++|.+... .+..+..+++|++|+++
T Consensus 7 C~~~~l~c~~~~l~~ip~~~~~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls 86 (306)
T 2z66_A 7 CSGTEIRCNSKGLTSVPTGIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLS 86 (306)
T ss_dssp EETTEEECCSSCCSSCCSCCCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECC
T ss_pred eCCCEEEcCCCCcccCCCCCCCCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECC
Confidence 6777777743 236899999999999887777889999999999999988743 25677889999999999
Q ss_pred CcccCCCCCcccCCCCCCcEEEcccCcCcccCC-ccccCCCCCcEEEccccCCCCCCCccccCCCCccEEEecCCcccc-
Q 040195 95 NNSFSGTIPTNLSRCSELTHLRVANNKLEGQIP-KEIGSLLKLQTLALYYNNLTGQLPDFVGNLSALQVIYIRGNSLGG- 172 (472)
Q Consensus 95 ~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~-~~l~~l~~L~~L~l~~~~i~~~~~~~l~~~~~L~~L~l~~~~~~~- 172 (472)
+|.+. ..+..+..+++|++|++++|.++...+ ..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+++
T Consensus 87 ~n~i~-~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~ 165 (306)
T 2z66_A 87 FNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQEN 165 (306)
T ss_dssp SCSEE-EEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGG
T ss_pred CCccc-cChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccc
Confidence 99987 566678899999999999999985443 578899999999999999987788888999999999999999976
Q ss_pred ccccccccCCCccEEEccCCccccccccccccChhhhcCCCCccEEEcccccccccCCccCcCCCCCCEEecCCCccccc
Q 040195 173 KIPTTLGLLRNLVYLNVNENQFWYVSSFSGSLPFDILVNLPNLKKLCIAENNFVGSIPDSLSNASNLELLELAGNQFEGK 252 (472)
Q Consensus 173 ~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~ 252 (472)
..+..+..+++|++|++++|.+.. ++...+..+++|++|++++|.+++..+..+..+++|+.|++++|.+.+.
T Consensus 166 ~~~~~~~~l~~L~~L~Ls~n~l~~-------~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~ 238 (306)
T 2z66_A 166 FLPDIFTELRNLTFLDLSQCQLEQ-------LSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTS 238 (306)
T ss_dssp EECSCCTTCTTCCEEECTTSCCCE-------ECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBC
T ss_pred cchhHHhhCcCCCEEECCCCCcCC-------cCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCccc
Confidence 567888999999999999998743 4445667889999999999999987777789999999999999999988
Q ss_pred ccccccccC-CCCeEEcCCCcCCC
Q 040195 253 VSIDFSSLK-NLAVLNLERNNLGI 275 (472)
Q Consensus 253 ~~~~l~~l~-~L~~L~l~~~~~~~ 275 (472)
.+..+..++ +|++|++++|++..
T Consensus 239 ~~~~~~~~~~~L~~L~L~~N~~~~ 262 (306)
T 2z66_A 239 KKQELQHFPSSLAFLNLTQNDFAC 262 (306)
T ss_dssp SSSSCCCCCTTCCEEECTTCCEEC
T ss_pred CHHHHHhhhccCCEEEccCCCeec
Confidence 888888885 99999999999863
No 55
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.94 E-value=4.2e-26 Score=211.67 Aligned_cols=248 Identities=23% Similarity=0.278 Sum_probs=129.7
Q ss_pred cEEEecCCccccccccccccCCCccEEEccCCccccccccccccChhhhcCCCCccEEEccccccccc--CCccCcCCCC
Q 040195 161 QVIYIRGNSLGGKIPTTLGLLRNLVYLNVNENQFWYVSSFSGSLPFDILVNLPNLKKLCIAENNFVGS--IPDSLSNASN 238 (472)
Q Consensus 161 ~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~--~~~~l~~~~~ 238 (472)
+.++.+++.++ .+|..+ .++|++|++++|.+ ..++...+..+++|++|++++|.+... .+..+..+++
T Consensus 10 ~~l~c~~~~l~-~ip~~~--~~~l~~L~L~~n~l-------~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~ 79 (306)
T 2z66_A 10 TEIRCNSKGLT-SVPTGI--PSSATRLELESNKL-------QSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTS 79 (306)
T ss_dssp TEEECCSSCCS-SCCSCC--CTTCCEEECCSSCC-------CCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSC
T ss_pred CEEEcCCCCcc-cCCCCC--CCCCCEEECCCCcc-------CccCHhHhhccccCCEEECCCCccCcccCcccccccccc
Confidence 35666666665 334332 25777777777776 344445566677777777777766532 1344556677
Q ss_pred CCEEecCCCcccccccccccccCCCCeEEcCCCcCCCCCCCCcchhhhhcccCCCcCCchhhhccccccEEEeecccccC
Q 040195 239 LELLELAGNQFEGKVSIDFSSLKNLAVLNLERNNLGIGTANDLGFVTFLTNCSSLKLPHSIANLSSTMTHFYIGGNQILG 318 (472)
Q Consensus 239 L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~l~l~~~~~~~ 318 (472)
|++|++++|.+.. .+..+..+++|++|++++|.+...... ......++++.|++++|.+..
T Consensus 80 L~~L~Ls~n~i~~-l~~~~~~l~~L~~L~l~~n~l~~~~~~------------------~~~~~l~~L~~L~l~~n~l~~ 140 (306)
T 2z66_A 80 LKYLDLSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEF------------------SVFLSLRNLIYLDISHTHTRV 140 (306)
T ss_dssp CCEEECCSCSEEE-EEEEEETCTTCCEEECTTSEEESSTTT------------------TTTTTCTTCCEEECTTSCCEE
T ss_pred cCEEECCCCcccc-ChhhcCCCCCCCEEECCCCcccccccc------------------hhhhhccCCCEEECCCCcCCc
Confidence 7777777777663 334466677777777777665421100 000111245555555555544
Q ss_pred cccccccCccCcceEecccccccc-CcchhhcCCCCCcEEEccCCcCccccccchhcccccCeeeccCCcccccCCcCcc
Q 040195 319 IIHFGIRNLVNLIALGMQSNQLHG-TIPDVIGELKNLQILSLFGNFLHGSIPSSLGNLTKLANLELSSNSLQGNIPLSVG 397 (472)
Q Consensus 319 ~~~~~l~~~~~L~~L~l~~~~i~~-~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~ 397 (472)
..+..+..+++|++|++++|.+.+ ..|..+..+++|++|++++|.+++..+..+..+++|++|++++|++++..+..+.
T Consensus 141 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~ 220 (306)
T 2z66_A 141 AFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYK 220 (306)
T ss_dssp CSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGT
T ss_pred cchhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhcc
Confidence 444444455555555555555443 2344444555555555555555444444444555555555555555433333444
Q ss_pred CCCCCceEeecCCcccccCChhhhhhc-ccceEEEcCCCccc
Q 040195 398 NCQNLIGFDASHITLTGALPQQLLSIT-TLSLYLDLSHNLLN 438 (472)
Q Consensus 398 ~~~~L~~L~ls~~~~~~~~~~~l~~~~-~l~~~L~ls~n~l~ 438 (472)
.+++|+.|++++|.+.+..+..+..++ +++ .|++++|+++
T Consensus 221 ~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~-~L~L~~N~~~ 261 (306)
T 2z66_A 221 CLNSLQVLDYSLNHIMTSKKQELQHFPSSLA-FLNLTQNDFA 261 (306)
T ss_dssp TCTTCCEEECTTSCCCBCSSSSCCCCCTTCC-EEECTTCCEE
T ss_pred CcccCCEeECCCCCCcccCHHHHHhhhccCC-EEEccCCCee
Confidence 455555555555555444444444442 444 5555555444
No 56
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.94 E-value=7.5e-26 Score=207.72 Aligned_cols=224 Identities=22% Similarity=0.222 Sum_probs=192.6
Q ss_pred EEEECCCCccCcccCccccCCCCccEEeccCCcCccCcchhhhcCCCCCEEEccCcccCCCCCcccCCCCCCcEEEcccC
Q 040195 41 TELDLSNQRIGGVLSPYVGNLSFLRYINLSDNGFHGEIPQEIGNLYRLEKLELSNNSFSGTIPTNLSRCSELTHLRVANN 120 (472)
Q Consensus 41 ~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~ 120 (472)
++++.+++.+...... ..++|++|+++++.+....+..+..+++|++|++++|.+.+..+..|..+++|++|++++|
T Consensus 14 ~~~~c~~~~l~~ip~~---~~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 90 (285)
T 1ozn_A 14 VTTSCPQQGLQAVPVG---IPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDN 90 (285)
T ss_dssp CEEECCSSCCSSCCTT---CCTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSC
T ss_pred eEEEcCcCCcccCCcC---CCCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCC
Confidence 6788888887665432 3568999999999998777788999999999999999988777888999999999999999
Q ss_pred c-CcccCCccccCCCCCcEEEccccCCCCCCCccccCCCCccEEEecCCccccccccccccCCCccEEEccCCccccccc
Q 040195 121 K-LEGQIPKEIGSLLKLQTLALYYNNLTGQLPDFVGNLSALQVIYIRGNSLGGKIPTTLGLLRNLVYLNVNENQFWYVSS 199 (472)
Q Consensus 121 ~-~~~~~~~~l~~l~~L~~L~l~~~~i~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~ 199 (472)
. +....+..+..+++|++|++++|.+.+..+..+..+++|++|++++|.++...+..+..+++|++|++++|.+.
T Consensus 91 ~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~---- 166 (285)
T 1ozn_A 91 AQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRIS---- 166 (285)
T ss_dssp TTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC----
T ss_pred CCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCccc----
Confidence 7 77566778899999999999999998777888889999999999999998666667888999999999999874
Q ss_pred cccccChhhhcCCCCccEEEcccccccccCCccCcCCCCCCEEecCCCcccccccccccccCCCCeEEcCCCcCC
Q 040195 200 FSGSLPFDILVNLPNLKKLCIAENNFVGSIPDSLSNASNLELLELAGNQFEGKVSIDFSSLKNLAVLNLERNNLG 274 (472)
Q Consensus 200 ~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 274 (472)
.++...+..+++|+.|++++|.+.+..+..+..+++|+.|++++|.+++..+..+..+++|++|++++|++.
T Consensus 167 ---~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~ 238 (285)
T 1ozn_A 167 ---SVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWV 238 (285)
T ss_dssp ---EECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEE
T ss_pred ---ccCHHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCcc
Confidence 444555778899999999999999888888999999999999999998766667889999999999999875
No 57
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.94 E-value=9e-26 Score=207.16 Aligned_cols=249 Identities=21% Similarity=0.198 Sum_probs=123.9
Q ss_pred CccEEEecCCccccccccccccCCCccEEEccCCccccccccccccChhhhcCCCCccEEEccccc-ccccCCccCcCCC
Q 040195 159 ALQVIYIRGNSLGGKIPTTLGLLRNLVYLNVNENQFWYVSSFSGSLPFDILVNLPNLKKLCIAENN-FVGSIPDSLSNAS 237 (472)
Q Consensus 159 ~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~-l~~~~~~~l~~~~ 237 (472)
+|++|++++|.+++..+..+..+++|++|++++|.+.. +....+..+++|++|++++|. +....+..+..++
T Consensus 33 ~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~-------~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~ 105 (285)
T 1ozn_A 33 ASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLAR-------IDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLG 105 (285)
T ss_dssp TCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCE-------ECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCT
T ss_pred CceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccce-------eCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCc
Confidence 44444444444443333334444444444444444311 111223334444444444443 3333344455555
Q ss_pred CCCEEecCCCcccccccccccccCCCCeEEcCCCcCCCCCCCCcchhhhhcccCCCcCCchhhhccccccEEEeeccccc
Q 040195 238 NLELLELAGNQFEGKVSIDFSSLKNLAVLNLERNNLGIGTANDLGFVTFLTNCSSLKLPHSIANLSSTMTHFYIGGNQIL 317 (472)
Q Consensus 238 ~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~l~l~~~~~~ 317 (472)
+|++|++++|.++...+..+..+++|++|++++|.+.
T Consensus 106 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~------------------------------------------- 142 (285)
T 1ozn_A 106 RLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQ------------------------------------------- 142 (285)
T ss_dssp TCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCC-------------------------------------------
T ss_pred CCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCccc-------------------------------------------
Confidence 5555555555555444444555555555555554432
Q ss_pred CcccccccCccCcceEeccccccccCcchhhcCCCCCcEEEccCCcCccccccchhcccccCeeeccCCcccccCCcCcc
Q 040195 318 GIIHFGIRNLVNLIALGMQSNQLHGTIPDVIGELKNLQILSLFGNFLHGSIPSSLGNLTKLANLELSSNSLQGNIPLSVG 397 (472)
Q Consensus 318 ~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~ 397 (472)
...+..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+.+..+..+..+++|++|++++|++++..+..+.
T Consensus 143 ~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~ 222 (285)
T 1ozn_A 143 ALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALA 222 (285)
T ss_dssp CCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHT
T ss_pred ccCHhHhccCCCccEEECCCCcccccCHHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcc
Confidence 22222344555566666666655544444555666666666666666655566666666666666666666643334456
Q ss_pred CCCCCceEeecCCcccccCChhhhhhcccceEEEcCCCcccccccccccC--CCCCceEeccCC
Q 040195 398 NCQNLIGFDASHITLTGALPQQLLSITTLSLYLDLSHNLLNGSLLLQVGN--LKNLILLDISGN 459 (472)
Q Consensus 398 ~~~~L~~L~ls~~~~~~~~~~~l~~~~~l~~~L~ls~n~l~~~~~~~l~~--~~~L~~L~L~~n 459 (472)
.+++|+.|++++|++....+. ......++ .+..+.+.+....|+.+.+ +..++..++.+|
T Consensus 223 ~l~~L~~L~l~~N~~~c~~~~-~~~~~~l~-~~~~~~~~~~c~~p~~l~g~~l~~l~~~~l~~C 284 (285)
T 1ozn_A 223 PLRALQYLRLNDNPWVCDCRA-RPLWAWLQ-KFRGSSSEVPCSLPQRLAGRDLKRLAANDLQGC 284 (285)
T ss_dssp TCTTCCEEECCSSCEECSGGG-HHHHHHHH-HCCSEECCCBEEESGGGTTCBGGGSCGGGSCCC
T ss_pred cCcccCEEeccCCCccCCCCc-HHHHHHHH-hcccccCccccCCchHhCCcChhhcCHHHhccC
Confidence 666666666666666522111 11112233 4445556665555655543 344555555554
No 58
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.94 E-value=1.6e-28 Score=249.67 Aligned_cols=157 Identities=16% Similarity=0.180 Sum_probs=91.6
Q ss_pred CCCceEEEECCCCccCccc---------------CccccCCCCccEEeccCCcCccCcchhhh-cCCCCCEEEccCc-cc
Q 040195 36 RHQRVTELDLSNQRIGGVL---------------SPYVGNLSFLRYINLSDNGFHGEIPQEIG-NLYRLEKLELSNN-SF 98 (472)
Q Consensus 36 ~~~~l~~L~l~~~~~~~~~---------------~~~l~~~~~L~~L~L~~~~~~~~~~~~~~-~l~~L~~L~L~~~-~~ 98 (472)
+++++++|+++++...... ......+++|++|+++++.+.+..+..+. .+++|++|++++| .+
T Consensus 64 ~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~ 143 (594)
T 2p1m_B 64 RFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGF 143 (594)
T ss_dssp HCTTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEE
T ss_pred hCCCceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCC
Confidence 3467777777776421111 01123567788888887776655445554 5778888888777 33
Q ss_pred CCC-CCcccCCCCCCcEEEcccCcCcccCCccc----cCCCCCcEEEccccC--CCCC-CCccccCCCCccEEEecCCcc
Q 040195 99 SGT-IPTNLSRCSELTHLRVANNKLEGQIPKEI----GSLLKLQTLALYYNN--LTGQ-LPDFVGNLSALQVIYIRGNSL 170 (472)
Q Consensus 99 ~~~-~~~~l~~l~~L~~L~l~~~~~~~~~~~~l----~~l~~L~~L~l~~~~--i~~~-~~~~l~~~~~L~~L~l~~~~~ 170 (472)
.+. .+..+..+++|++|++++|.++...+..+ ..+++|++|+++++. +... ....+..+++|++|++++|..
T Consensus 144 ~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~ 223 (594)
T 2p1m_B 144 STDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVP 223 (594)
T ss_dssp EHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSC
T ss_pred CHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCc
Confidence 321 23334467788888888777654333222 356678888887775 2111 111123457788888877732
Q ss_pred ccccccccccCCCccEEEccCC
Q 040195 171 GGKIPTTLGLLRNLVYLNVNEN 192 (472)
Q Consensus 171 ~~~~~~~l~~~~~L~~L~l~~~ 192 (472)
.+..+..+..+++|++|++..+
T Consensus 224 ~~~l~~~~~~~~~L~~L~l~~~ 245 (594)
T 2p1m_B 224 LEKLATLLQRAPQLEELGTGGY 245 (594)
T ss_dssp HHHHHHHHHHCTTCSEEECSBC
T ss_pred HHHHHHHHhcCCcceEcccccc
Confidence 2235556667777777776554
No 59
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.94 E-value=2e-25 Score=208.50 Aligned_cols=235 Identities=21% Similarity=0.268 Sum_probs=176.4
Q ss_pred CCCccEEEccCCccccccccccccChhhhcCCCCccEEEcccccccccCCccCcCCCCCCEEecCCCccccccccccccc
Q 040195 181 LRNLVYLNVNENQFWYVSSFSGSLPFDILVNLPNLKKLCIAENNFVGSIPDSLSNASNLELLELAGNQFEGKVSIDFSSL 260 (472)
Q Consensus 181 ~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l 260 (472)
.++++.|++++|.+. .+|.. +..+++|++|++++|.++ .+|..++.+++|++|++++|.++ ..+..+..+
T Consensus 80 ~~~l~~L~L~~n~l~-------~lp~~-l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l 149 (328)
T 4fcg_A 80 QPGRVALELRSVPLP-------QFPDQ-AFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASL 149 (328)
T ss_dssp STTCCEEEEESSCCS-------SCCSC-GGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGC
T ss_pred ccceeEEEccCCCch-------hcChh-hhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcC
Confidence 356777777777663 33322 234667777777777776 55666677777777777777766 445566677
Q ss_pred CCCCeEEcCCCcCCCCCCCCcchhhhhcccCCCcCCchhhhccccccEEEeecccccCcccccccCccCcceEecccccc
Q 040195 261 KNLAVLNLERNNLGIGTANDLGFVTFLTNCSSLKLPHSIANLSSTMTHFYIGGNQILGIIHFGIRNLVNLIALGMQSNQL 340 (472)
Q Consensus 261 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~i 340 (472)
++|++|++++|++... +|. .+.... ....+..+++|++|++++|.+
T Consensus 150 ~~L~~L~L~~n~~~~~------------------~p~-------~~~~~~---------~~~~~~~l~~L~~L~L~~n~l 195 (328)
T 4fcg_A 150 NRLRELSIRACPELTE------------------LPE-------PLASTD---------ASGEHQGLVNLQSLRLEWTGI 195 (328)
T ss_dssp TTCCEEEEEEETTCCC------------------CCS-------CSEEEC----------CCCEEESTTCCEEEEEEECC
T ss_pred cCCCEEECCCCCCccc------------------cCh-------hHhhcc---------chhhhccCCCCCEEECcCCCc
Confidence 7777777776554321 111 111110 112345688999999999998
Q ss_pred ccCcchhhcCCCCCcEEEccCCcCccccccchhcccccCeeeccCCcccccCCcCccCCCCCceEeecCCcccccCChhh
Q 040195 341 HGTIPDVIGELKNLQILSLFGNFLHGSIPSSLGNLTKLANLELSSNSLQGNIPLSVGNCQNLIGFDASHITLTGALPQQL 420 (472)
Q Consensus 341 ~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ls~~~~~~~~~~~l 420 (472)
. .+|..++.+++|++|++++|.+. .++..+..+++|++|++++|++.+.+|..+..+++|+.|++++|.+.+.+|..+
T Consensus 196 ~-~lp~~l~~l~~L~~L~L~~N~l~-~l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~ 273 (328)
T 4fcg_A 196 R-SLPASIANLQNLKSLKIRNSPLS-ALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDI 273 (328)
T ss_dssp C-CCCGGGGGCTTCCEEEEESSCCC-CCCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTG
T ss_pred C-cchHhhcCCCCCCEEEccCCCCC-cCchhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhh
Confidence 8 77778888999999999999988 466678889999999999999888888889999999999999998888889889
Q ss_pred hhhcccceEEEcCCCcccccccccccCCCCCceEeccCCeec
Q 040195 421 LSITTLSLYLDLSHNLLNGSLLLQVGNLKNLILLDISGNQFS 462 (472)
Q Consensus 421 ~~~~~l~~~L~ls~n~l~~~~~~~l~~~~~L~~L~L~~n~~~ 462 (472)
..+++|+ .|++++|++.+.+|..+.++++|+.+++..+.+.
T Consensus 274 ~~l~~L~-~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~~~~ 314 (328)
T 4fcg_A 274 HRLTQLE-KLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQA 314 (328)
T ss_dssp GGCTTCC-EEECTTCTTCCCCCGGGGGSCTTCEEECCGGGSC
T ss_pred hcCCCCC-EEeCCCCCchhhccHHHhhccCceEEeCCHHHHH
Confidence 9999999 9999999988899999999999999999887654
No 60
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.93 E-value=6.6e-25 Score=214.91 Aligned_cols=248 Identities=21% Similarity=0.203 Sum_probs=137.4
Q ss_pred CCEEEccCcccCCCCCcccCCCCCCcEEEcccCcCcccCCccccCCCCCcEEEccccCCCCCCCccccCCCCccEEEecC
Q 040195 88 LEKLELSNNSFSGTIPTNLSRCSELTHLRVANNKLEGQIPKEIGSLLKLQTLALYYNNLTGQLPDFVGNLSALQVIYIRG 167 (472)
Q Consensus 88 L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~i~~~~~~~l~~~~~L~~L~l~~ 167 (472)
...++.++..+. .+|..+. +++++|++++|.++...+..|.++++|++|++++|.+.+..+..+..+++|++|++++
T Consensus 56 ~~~v~c~~~~l~-~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~ 132 (452)
T 3zyi_A 56 FSKVVCTRRGLS-EVPQGIP--SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFD 132 (452)
T ss_dssp SCEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CcEEEECCCCcC-ccCCCCC--CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCC
Confidence 456666666665 4454332 5677777777777655566666777777777777766655556666666666666666
Q ss_pred CccccccccccccCCCccEEEccCCccccccccccccChhhhcCCCCccEEEcccccccccCCccCcCCCCCCEEecCCC
Q 040195 168 NSLGGKIPTTLGLLRNLVYLNVNENQFWYVSSFSGSLPFDILVNLPNLKKLCIAENNFVGSIPDSLSNASNLELLELAGN 247 (472)
Q Consensus 168 ~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~~ 247 (472)
|.++...+..+..+++|++|++++|.+. .++...+..+++|+.|++++|.
T Consensus 133 n~l~~~~~~~~~~l~~L~~L~L~~N~l~-------~~~~~~~~~l~~L~~L~l~~~~----------------------- 182 (452)
T 3zyi_A 133 NWLTVIPSGAFEYLSKLRELWLRNNPIE-------SIPSYAFNRVPSLMRLDLGELK----------------------- 182 (452)
T ss_dssp SCCSBCCTTTSSSCTTCCEEECCSCCCC-------EECTTTTTTCTTCCEEECCCCT-----------------------
T ss_pred CcCCccChhhhcccCCCCEEECCCCCcc-------eeCHhHHhcCCcccEEeCCCCC-----------------------
Confidence 6666444444555666666666666542 2223334444444444444422
Q ss_pred cccccccccccccCCCCeEEcCCCcCCCCCCCCcchhhhhcccCCCcCCchhhhccccccEEEeecccccCcccccccCc
Q 040195 248 QFEGKVSIDFSSLKNLAVLNLERNNLGIGTANDLGFVTFLTNCSSLKLPHSIANLSSTMTHFYIGGNQILGIIHFGIRNL 327 (472)
Q Consensus 248 ~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~l~~~ 327 (472)
.+.......+..+++|++|++++|.+... +. + ...++|+.|++++|.++...+..|..+
T Consensus 183 ~l~~i~~~~~~~l~~L~~L~L~~n~l~~~-------------------~~-~-~~l~~L~~L~Ls~N~l~~~~~~~~~~l 241 (452)
T 3zyi_A 183 KLEYISEGAFEGLFNLKYLNLGMCNIKDM-------------------PN-L-TPLVGLEELEMSGNHFPEIRPGSFHGL 241 (452)
T ss_dssp TCCEECTTTTTTCTTCCEEECTTSCCSSC-------------------CC-C-TTCTTCCEEECTTSCCSEECGGGGTTC
T ss_pred CccccChhhccCCCCCCEEECCCCccccc-------------------cc-c-cccccccEEECcCCcCcccCcccccCc
Confidence 22222223344445555555554444310 00 0 000134444444444444444556666
Q ss_pred cCcceEeccccccccCcchhhcCCCCCcEEEccCCcCccccccchhcccccCeeeccCCccc
Q 040195 328 VNLIALGMQSNQLHGTIPDVIGELKNLQILSLFGNFLHGSIPSSLGNLTKLANLELSSNSLQ 389 (472)
Q Consensus 328 ~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~~~~~ 389 (472)
++|+.|++++|.+.+..+..|..+++|++|+|++|.+++..+..+..+++|++|++++|++.
T Consensus 242 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~ 303 (452)
T 3zyi_A 242 SSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWN 303 (452)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSCEE
T ss_pred cCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCCEEEccCCCcC
Confidence 66666666666666555666666666666666666666555555566666666666666655
No 61
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.93 E-value=4.6e-25 Score=215.23 Aligned_cols=247 Identities=23% Similarity=0.240 Sum_probs=144.1
Q ss_pred ccEEEecCCccccccccccccCCCccEEEccCCccccccccccccChhhhcCCCCccEEEcccccccccCCccCcCCCCC
Q 040195 160 LQVIYIRGNSLGGKIPTTLGLLRNLVYLNVNENQFWYVSSFSGSLPFDILVNLPNLKKLCIAENNFVGSIPDSLSNASNL 239 (472)
Q Consensus 160 L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L 239 (472)
.+.++..+..++ .+|..+. ++++.|++++|.+. .++...+..+++|++|++++|.+....+..|.++++|
T Consensus 45 ~~~v~c~~~~l~-~iP~~~~--~~l~~L~L~~n~i~-------~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L 114 (440)
T 3zyj_A 45 FSKVICVRKNLR-EVPDGIS--TNTRLLNLHENQIQ-------IIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANL 114 (440)
T ss_dssp SCEEECCSCCCS-SCCSCCC--TTCSEEECCSCCCC-------EECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSC
T ss_pred CCEEEeCCCCcC-cCCCCCC--CCCcEEEccCCcCC-------eeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccC
Confidence 344555555554 3333332 45566666666552 2223334455555555555555554444555555555
Q ss_pred CEEecCCCcccccccccccccCCCCeEEcCCCcCCCCCCCCcchhhhhcccCCCcCCchhhhccccccEEEeecccccCc
Q 040195 240 ELLELAGNQFEGKVSIDFSSLKNLAVLNLERNNLGIGTANDLGFVTFLTNCSSLKLPHSIANLSSTMTHFYIGGNQILGI 319 (472)
Q Consensus 240 ~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~l~l~~~~~~~~ 319 (472)
++|++++|.++......|..+++|++|++++|. +..+
T Consensus 115 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~-------------------------------------------i~~~ 151 (440)
T 3zyj_A 115 NTLELFDNRLTTIPNGAFVYLSKLKELWLRNNP-------------------------------------------IESI 151 (440)
T ss_dssp CEEECCSSCCSSCCTTTSCSCSSCCEEECCSCC-------------------------------------------CCEE
T ss_pred CEEECCCCcCCeeCHhHhhccccCceeeCCCCc-------------------------------------------cccc
Confidence 555555555554444445555555555555554 4444
Q ss_pred ccccccCccCcceEecccc-ccccCcchhhcCCCCCcEEEccCCcCccccccchhcccccCeeeccCCcccccCCcCccC
Q 040195 320 IHFGIRNLVNLIALGMQSN-QLHGTIPDVIGELKNLQILSLFGNFLHGSIPSSLGNLTKLANLELSSNSLQGNIPLSVGN 398 (472)
Q Consensus 320 ~~~~l~~~~~L~~L~l~~~-~i~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~ 398 (472)
....|..+++|++|++++| .+....+..|..+++|++|++++|.++ .++ .+..+++|++|++++|++++..+..+..
T Consensus 152 ~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~-~~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~ 229 (440)
T 3zyj_A 152 PSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR-EIP-NLTPLIKLDELDLSGNHLSAIRPGSFQG 229 (440)
T ss_dssp CTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCS-SCC-CCTTCSSCCEEECTTSCCCEECTTTTTT
T ss_pred CHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCc-ccc-ccCCCcccCEEECCCCccCccChhhhcc
Confidence 4445566666666666664 333333345666677777777777666 333 3556667777777777766655666666
Q ss_pred CCCCceEeecCCcccccCChhhhhhcccceEEEcCCCcccccccccccCCCCCceEeccCCeec
Q 040195 399 CQNLIGFDASHITLTGALPQQLLSITTLSLYLDLSHNLLNGSLLLQVGNLKNLILLDISGNQFS 462 (472)
Q Consensus 399 ~~~L~~L~ls~~~~~~~~~~~l~~~~~l~~~L~ls~n~l~~~~~~~l~~~~~L~~L~L~~n~~~ 462 (472)
+++|+.|++++|.+.+..+..+..+++|+ .|++++|+++...+..|..+++|+.|+|++|++.
T Consensus 230 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~-~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~ 292 (440)
T 3zyj_A 230 LMHLQKLWMIQSQIQVIERNAFDNLQSLV-EINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWN 292 (440)
T ss_dssp CTTCCEEECTTCCCCEECTTSSTTCTTCC-EEECTTSCCCCCCTTTTSSCTTCCEEECCSSCEE
T ss_pred CccCCEEECCCCceeEEChhhhcCCCCCC-EEECCCCCCCccChhHhccccCCCEEEcCCCCcc
Confidence 77777777777776655556666666676 7777777776665566666777777777777653
No 62
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.93 E-value=5.8e-25 Score=215.27 Aligned_cols=228 Identities=21% Similarity=0.177 Sum_probs=201.7
Q ss_pred CceEEEECCCCccCcccCccccCCCCccEEeccCCcCccCcchhhhcCCCCCEEEccCcccCCCCCcccCCCCCCcEEEc
Q 040195 38 QRVTELDLSNQRIGGVLSPYVGNLSFLRYINLSDNGFHGEIPQEIGNLYRLEKLELSNNSFSGTIPTNLSRCSELTHLRV 117 (472)
Q Consensus 38 ~~l~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l 117 (472)
++++.|++++|.+....+..|..+++|++|+|++|.+....+..|.++++|++|++++|.+....+..|..+++|++|++
T Consensus 75 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 154 (452)
T 3zyi_A 75 SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWL 154 (452)
T ss_dssp TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEEC
T ss_pred CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEEC
Confidence 68999999999999988899999999999999999999888889999999999999999998777777999999999999
Q ss_pred ccCcCcccCCccccCCCCCcEEEcccc-CCCCCCCccccCCCCccEEEecCCccccccccccccCCCccEEEccCCcccc
Q 040195 118 ANNKLEGQIPKEIGSLLKLQTLALYYN-NLTGQLPDFVGNLSALQVIYIRGNSLGGKIPTTLGLLRNLVYLNVNENQFWY 196 (472)
Q Consensus 118 ~~~~~~~~~~~~l~~l~~L~~L~l~~~-~i~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~ 196 (472)
++|.+....+..+.++++|++|+++++ .+....+..+..+++|++|++++|.+++. ..+..+++|++|++++|.+.
T Consensus 155 ~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~- 231 (452)
T 3zyi_A 155 RNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDM--PNLTPLVGLEELEMSGNHFP- 231 (452)
T ss_dssp CSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSC--CCCTTCTTCCEEECTTSCCS-
T ss_pred CCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCccccc--ccccccccccEEECcCCcCc-
Confidence 999998666678999999999999984 45544445688899999999999999743 45788999999999999983
Q ss_pred ccccccccChhhhcCCCCccEEEcccccccccCCccCcCCCCCCEEecCCCcccccccccccccCCCCeEEcCCCcCC
Q 040195 197 VSSFSGSLPFDILVNLPNLKKLCIAENNFVGSIPDSLSNASNLELLELAGNQFEGKVSIDFSSLKNLAVLNLERNNLG 274 (472)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 274 (472)
.++...+..+++|+.|++++|.+....+..|..+++|+.|++++|.++......+..+++|+.|++++|++.
T Consensus 232 ------~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~ 303 (452)
T 3zyi_A 232 ------EIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWN 303 (452)
T ss_dssp ------EECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSCEE
T ss_pred ------ccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCCEEEccCCCcC
Confidence 444566788999999999999999888888999999999999999999777778889999999999999875
No 63
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.93 E-value=4.1e-28 Score=246.55 Aligned_cols=402 Identities=14% Similarity=0.108 Sum_probs=262.8
Q ss_pred CCCceEEEECCCCccCcccCcccc-CCCCccEEeccCC-cCccC-cchhhhcCCCCCEEEccCcccCCCCCccc----CC
Q 040195 36 RHQRVTELDLSNQRIGGVLSPYVG-NLSFLRYINLSDN-GFHGE-IPQEIGNLYRLEKLELSNNSFSGTIPTNL----SR 108 (472)
Q Consensus 36 ~~~~l~~L~l~~~~~~~~~~~~l~-~~~~L~~L~L~~~-~~~~~-~~~~~~~l~~L~~L~L~~~~~~~~~~~~l----~~ 108 (472)
.++++++|+++++.+.+.....+. .+++|++|++++| .+... .+..+.++++|++|++++|.+.+..+..+ ..
T Consensus 103 ~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~ 182 (594)
T 2p1m_B 103 SYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDT 182 (594)
T ss_dssp HCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTT
T ss_pred hCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhc
Confidence 347899999999998876666665 6899999999998 44432 34445689999999999998775444333 46
Q ss_pred CCCCcEEEcccCc--Ccc-cCCccccCCCCCcEEEcccc-CCCCCCCccccCCCCccEEEecCCc-------cccccccc
Q 040195 109 CSELTHLRVANNK--LEG-QIPKEIGSLLKLQTLALYYN-NLTGQLPDFVGNLSALQVIYIRGNS-------LGGKIPTT 177 (472)
Q Consensus 109 l~~L~~L~l~~~~--~~~-~~~~~l~~l~~L~~L~l~~~-~i~~~~~~~l~~~~~L~~L~l~~~~-------~~~~~~~~ 177 (472)
+++|++|++++|. +.. .+...+..+++|++|++++| .+. ..+..+..+++|++|.+..+. +. ..+..
T Consensus 183 ~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~-~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~-~l~~~ 260 (594)
T 2p1m_B 183 YTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLE-KLATLLQRAPQLEELGTGGYTAEVRPDVYS-GLSVA 260 (594)
T ss_dssp CCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHH-HHHHHHHHCTTCSEEECSBCCCCCCHHHHH-HHHHH
T ss_pred CCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHH-HHHHHHhcCCcceEcccccccCccchhhHH-HHHHH
Confidence 7899999999986 221 11222345799999999988 343 366777789999999976553 22 23346
Q ss_pred cccCCCccEE-EccCCccccccccccccChhhhcCCCCccEEEcccccccccC-CccCcCCCCCCEEecCCCcccccccc
Q 040195 178 LGLLRNLVYL-NVNENQFWYVSSFSGSLPFDILVNLPNLKKLCIAENNFVGSI-PDSLSNASNLELLELAGNQFEGKVSI 255 (472)
Q Consensus 178 l~~~~~L~~L-~l~~~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~-~~~l~~~~~L~~L~l~~~~~~~~~~~ 255 (472)
+..+++|+.+ .+.+... ..+ ......+++|++|++++|.++... ...+..+++|++|++++| +.+....
T Consensus 261 l~~~~~L~~Ls~~~~~~~-------~~l-~~~~~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~ 331 (594)
T 2p1m_B 261 LSGCKELRCLSGFWDAVP-------AYL-PAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLE 331 (594)
T ss_dssp HHTCTTCCEEECCBTCCG-------GGG-GGGHHHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHH
T ss_pred HhcCCCcccccCCcccch-------hhH-HHHHHhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc-cCHHHHH
Confidence 7788899988 3333221 111 123345789999999999865432 223567899999999987 4433333
Q ss_pred cc-cccCCCCeEEcCCCcCCC-CCCCCcchhhhhcccCCCcCCchhhhccccccEEEeecccccCccccccc-CccCcce
Q 040195 256 DF-SSLKNLAVLNLERNNLGI-GTANDLGFVTFLTNCSSLKLPHSIANLSSTMTHFYIGGNQILGIIHFGIR-NLVNLIA 332 (472)
Q Consensus 256 ~l-~~l~~L~~L~l~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~l~-~~~~L~~ 332 (472)
.+ ..+++|++|++.++.-.+ .....+... ....+....++|+.|.+..+.++......+. .+++|+.
T Consensus 332 ~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~----------~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~ 401 (594)
T 2p1m_B 332 VLASTCKDLRELRVFPSEPFVMEPNVALTEQ----------GLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTR 401 (594)
T ss_dssp HHHHHCTTCCEEEEECSCTTCSSCSSCCCHH----------HHHHHHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCE
T ss_pred HHHHhCCCCCEEEEecCcccccccCCCCCHH----------HHHHHHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcce
Confidence 23 358899999985532100 000000000 0011122234788888877777765444444 4788888
Q ss_pred Eecc--c----cccccC-----cchhhcCCCCCcEEEccCCcCccccccchhc-ccccCeeeccCCcccccCCcCc-cCC
Q 040195 333 LGMQ--S----NQLHGT-----IPDVIGELKNLQILSLFGNFLHGSIPSSLGN-LTKLANLELSSNSLQGNIPLSV-GNC 399 (472)
Q Consensus 333 L~l~--~----~~i~~~-----~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~-~~~L~~L~l~~~~~~~~~~~~~-~~~ 399 (472)
|+++ + +.+++. .+..+..+++|++|++++ .+++.....+.. +++|++|++++|.+++.....+ ..+
T Consensus 402 L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~ 480 (594)
T 2p1m_B 402 FRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG-LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGC 480 (594)
T ss_dssp EEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS-SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHC
T ss_pred eEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC-cccHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcC
Confidence 8888 3 344421 122356678899999877 565555555554 7889999998888875444333 568
Q ss_pred CCCceEeecCCcccccCCh-hhhhhcccceEEEcCCCcccccccccc-cCCCCCceEeccCCe
Q 040195 400 QNLIGFDASHITLTGALPQ-QLLSITTLSLYLDLSHNLLNGSLLLQV-GNLKNLILLDISGNQ 460 (472)
Q Consensus 400 ~~L~~L~ls~~~~~~~~~~-~l~~~~~l~~~L~ls~n~l~~~~~~~l-~~~~~L~~L~L~~n~ 460 (472)
++|++|++++|++++..+. ....+++|+ .|++++|+++......+ ..+++|+...+..+.
T Consensus 481 ~~L~~L~L~~n~~~~~~~~~~~~~l~~L~-~L~l~~~~~~~~~~~~l~~~lp~l~i~~~~~~~ 542 (594)
T 2p1m_B 481 DSLRKLEIRDCPFGDKALLANASKLETMR-SLWMSSCSVSFGACKLLGQKMPKLNVEVIDERG 542 (594)
T ss_dssp TTCCEEEEESCSCCHHHHHHTGGGGGGSS-EEEEESSCCBHHHHHHHHHHCTTEEEEEECSSS
T ss_pred CCcCEEECcCCCCcHHHHHHHHHhCCCCC-EEeeeCCCCCHHHHHHHHHhCCCCEEEEecCCC
Confidence 8899999999888643333 334478888 89998888865544445 456777666666554
No 64
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.93 E-value=1.5e-24 Score=211.63 Aligned_cols=228 Identities=21% Similarity=0.200 Sum_probs=201.2
Q ss_pred CceEEEECCCCccCcccCccccCCCCccEEeccCCcCccCcchhhhcCCCCCEEEccCcccCCCCCcccCCCCCCcEEEc
Q 040195 38 QRVTELDLSNQRIGGVLSPYVGNLSFLRYINLSDNGFHGEIPQEIGNLYRLEKLELSNNSFSGTIPTNLSRCSELTHLRV 117 (472)
Q Consensus 38 ~~l~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l 117 (472)
++++.|++++|.+....+..|..+++|++|+|++|.+....+.+|.++++|++|++++|.+....+..|..+++|++|++
T Consensus 64 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 143 (440)
T 3zyj_A 64 TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWL 143 (440)
T ss_dssp TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEEC
T ss_pred CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeCHhHhhccccCceeeC
Confidence 67899999999999988899999999999999999999888889999999999999999998666677999999999999
Q ss_pred ccCcCcccCCccccCCCCCcEEEcccc-CCCCCCCccccCCCCccEEEecCCccccccccccccCCCccEEEccCCcccc
Q 040195 118 ANNKLEGQIPKEIGSLLKLQTLALYYN-NLTGQLPDFVGNLSALQVIYIRGNSLGGKIPTTLGLLRNLVYLNVNENQFWY 196 (472)
Q Consensus 118 ~~~~~~~~~~~~l~~l~~L~~L~l~~~-~i~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~ 196 (472)
++|.+....+..+.++++|++|+++++ .+....+..+..+++|++|++++|.++. .+ .+..+++|++|++++|.+.
T Consensus 144 ~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~-~~-~~~~l~~L~~L~Ls~N~l~- 220 (440)
T 3zyj_A 144 RNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLRE-IP-NLTPLIKLDELDLSGNHLS- 220 (440)
T ss_dssp CSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSS-CC-CCTTCSSCCEEECTTSCCC-
T ss_pred CCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCcc-cc-ccCCCcccCEEECCCCccC-
Confidence 999998766678999999999999985 4544445578899999999999999873 33 5788999999999999884
Q ss_pred ccccccccChhhhcCCCCccEEEcccccccccCCccCcCCCCCCEEecCCCcccccccccccccCCCCeEEcCCCcCC
Q 040195 197 VSSFSGSLPFDILVNLPNLKKLCIAENNFVGSIPDSLSNASNLELLELAGNQFEGKVSIDFSSLKNLAVLNLERNNLG 274 (472)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 274 (472)
.++...+..+++|+.|++++|.+++..+..|..+++|+.|++++|.++......+..+++|+.|++++|++.
T Consensus 221 ------~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~ 292 (440)
T 3zyj_A 221 ------AIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWN 292 (440)
T ss_dssp ------EECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSCEE
T ss_pred ------ccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCCcc
Confidence 344456778999999999999999888888999999999999999999877778899999999999999875
No 65
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.93 E-value=1.8e-26 Score=215.01 Aligned_cols=238 Identities=18% Similarity=0.162 Sum_probs=109.8
Q ss_pred cCCCCccEEEecCCccccccccccccCCCccEEEccCCccccccccccccChhhhcCCCCccEEEcccccccccCCccCc
Q 040195 155 GNLSALQVIYIRGNSLGGKIPTTLGLLRNLVYLNVNENQFWYVSSFSGSLPFDILVNLPNLKKLCIAENNFVGSIPDSLS 234 (472)
Q Consensus 155 ~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~ 234 (472)
..+++|++|++++|.+++..+..+..+++|++|++++|.+..... +..+++|+.|++++|.+++..
T Consensus 31 ~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~---------~~~l~~L~~L~Ls~n~l~~l~----- 96 (317)
T 3o53_A 31 QSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD---------LESLSTLRTLDLNNNYVQELL----- 96 (317)
T ss_dssp TTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE---------ETTCTTCCEEECCSSEEEEEE-----
T ss_pred ccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh---------hhhcCCCCEEECcCCcccccc-----
Confidence 344556666666666655444555566666666666665432210 334555555555555554321
Q ss_pred CCCCCCEEecCCCcccccccccccccCCCCeEEcCCCcCCCCCCCCcchhhhhcccCCCcCCchhhhccccccEEEeecc
Q 040195 235 NASNLELLELAGNQFEGKVSIDFSSLKNLAVLNLERNNLGIGTANDLGFVTFLTNCSSLKLPHSIANLSSTMTHFYIGGN 314 (472)
Q Consensus 235 ~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~l~l~~~ 314 (472)
..++|+.|++++|.++..... .+++|++|++++|.+
T Consensus 97 ~~~~L~~L~l~~n~l~~~~~~---~~~~L~~L~l~~N~l----------------------------------------- 132 (317)
T 3o53_A 97 VGPSIETLHAANNNISRVSCS---RGQGKKNIYLANNKI----------------------------------------- 132 (317)
T ss_dssp ECTTCCEEECCSSCCSEEEEC---CCSSCEEEECCSSCC-----------------------------------------
T ss_pred CCCCcCEEECCCCccCCcCcc---ccCCCCEEECCCCCC-----------------------------------------
Confidence 225555555555555433222 234455555555444
Q ss_pred cccCcccccccCccCcceEeccccccccCcchhh-cCCCCCcEEEccCCcCccccccchhcccccCeeeccCCcccccCC
Q 040195 315 QILGIIHFGIRNLVNLIALGMQSNQLHGTIPDVI-GELKNLQILSLFGNFLHGSIPSSLGNLTKLANLELSSNSLQGNIP 393 (472)
Q Consensus 315 ~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~-~~~~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~ 393 (472)
+...+..+..+++|++|++++|.+.+..+..+ ..+++|++|++++|.+++. + ....+++|++|++++|.+++ ++
T Consensus 133 --~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~-~-~~~~l~~L~~L~Ls~N~l~~-l~ 207 (317)
T 3o53_A 133 --TMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV-K-GQVVFAKLKTLDLSSNKLAF-MG 207 (317)
T ss_dssp --CSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE-E-CCCCCTTCCEEECCSSCCCE-EC
T ss_pred --CCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCccc-c-cccccccCCEEECCCCcCCc-ch
Confidence 44333344444444444444444443333332 2344444444444444422 1 11224444444444444442 22
Q ss_pred cCccCCCCCceEeecCCcccccCChhhhhhcccceEEEcCCCccc-ccccccccCCCCCceEecc
Q 040195 394 LSVGNCQNLIGFDASHITLTGALPQQLLSITTLSLYLDLSHNLLN-GSLLLQVGNLKNLILLDIS 457 (472)
Q Consensus 394 ~~~~~~~~L~~L~ls~~~~~~~~~~~l~~~~~l~~~L~ls~n~l~-~~~~~~l~~~~~L~~L~L~ 457 (472)
..+..+++|+.|++++|.+. .+|..+..+++++ .|++++|++. +..+..+..+++|+.++++
T Consensus 208 ~~~~~l~~L~~L~L~~N~l~-~l~~~~~~l~~L~-~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~ 270 (317)
T 3o53_A 208 PEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLE-HFDLRGNGFHCGTLRDFFSKNQRVQTVAKQ 270 (317)
T ss_dssp GGGGGGTTCSEEECTTSCCC-EECTTCCCCTTCC-EEECTTCCCBHHHHHHHHHTCHHHHHHHHH
T ss_pred hhhcccCcccEEECcCCccc-chhhHhhcCCCCC-EEEccCCCccCcCHHHHHhccccceEEECC
Confidence 23444444444444444444 3444444444444 4444444444 3334444444444444444
No 66
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.93 E-value=6.3e-26 Score=211.30 Aligned_cols=226 Identities=20% Similarity=0.175 Sum_probs=162.4
Q ss_pred CCCCccEEEcccccccccCCccCcCCCCCCEEecCCCcccccccccccccCCCCeEEcCCCcCCCCCCCCcchhhhhccc
Q 040195 211 NLPNLKKLCIAENNFVGSIPDSLSNASNLELLELAGNQFEGKVSIDFSSLKNLAVLNLERNNLGIGTANDLGFVTFLTNC 290 (472)
Q Consensus 211 ~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~ 290 (472)
.+++|++|++++|.+++..+..|..+++|++|++++|.+++..+ +..+++|++|++++|.+...
T Consensus 32 ~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n~l~~l-------------- 95 (317)
T 3o53_A 32 SAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQEL-------------- 95 (317)
T ss_dssp TGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECCSSEEEEE--------------
T ss_pred cCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECcCCccccc--------------
Confidence 34445555555555544444445555555555555555543222 45555555555555544310
Q ss_pred CCCcCCchhhhccccccEEEeecccccCcccccccCccCcceEeccccccccCcchhhcCCCCCcEEEccCCcCcccccc
Q 040195 291 SSLKLPHSIANLSSTMTHFYIGGNQILGIIHFGIRNLVNLIALGMQSNQLHGTIPDVIGELKNLQILSLFGNFLHGSIPS 370 (472)
Q Consensus 291 ~~l~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~ 370 (472)
+ ..++++.|++++|.++..... .+++|++|++++|.+.+..+..+..+++|++|++++|.+.+..+.
T Consensus 96 -----~-----~~~~L~~L~l~~n~l~~~~~~---~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~ 162 (317)
T 3o53_A 96 -----L-----VGPSIETLHAANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFA 162 (317)
T ss_dssp -----E-----ECTTCCEEECCSSCCSEEEEC---CCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGG
T ss_pred -----c-----CCCCcCEEECCCCccCCcCcc---ccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHH
Confidence 0 002566666666666554332 367899999999999987777888899999999999999877666
Q ss_pred ch-hcccccCeeeccCCcccccCCcCccCCCCCceEeecCCcccccCChhhhhhcccceEEEcCCCcccccccccccCCC
Q 040195 371 SL-GNLTKLANLELSSNSLQGNIPLSVGNCQNLIGFDASHITLTGALPQQLLSITTLSLYLDLSHNLLNGSLLLQVGNLK 449 (472)
Q Consensus 371 ~l-~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ls~~~~~~~~~~~l~~~~~l~~~L~ls~n~l~~~~~~~l~~~~ 449 (472)
.+ ..+++|++|++++|.+++. + ....+++|++|++++|.+. .++..+..+++++ .|++++|+++ .+|..+..++
T Consensus 163 ~~~~~l~~L~~L~L~~N~l~~~-~-~~~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~L~-~L~L~~N~l~-~l~~~~~~l~ 237 (317)
T 3o53_A 163 ELAASSDTLEHLNLQYNFIYDV-K-GQVVFAKLKTLDLSSNKLA-FMGPEFQSAAGVT-WISLRNNKLV-LIEKALRFSQ 237 (317)
T ss_dssp GGGGGTTTCCEEECTTSCCCEE-E-CCCCCTTCCEEECCSSCCC-EECGGGGGGTTCS-EEECTTSCCC-EECTTCCCCT
T ss_pred HHhhccCcCCEEECCCCcCccc-c-cccccccCCEEECCCCcCC-cchhhhcccCccc-EEECcCCccc-chhhHhhcCC
Confidence 66 4789999999999999854 3 3345899999999999999 5667799999999 9999999999 4677899999
Q ss_pred CCceEeccCCeec-cccCCccc
Q 040195 450 NLILLDISGNQFS-GVIPVTLS 470 (472)
Q Consensus 450 ~L~~L~L~~n~~~-~~~p~~~~ 470 (472)
+|+.|++++|+++ +.+|..++
T Consensus 238 ~L~~L~l~~N~~~~~~~~~~~~ 259 (317)
T 3o53_A 238 NLEHFDLRGNGFHCGTLRDFFS 259 (317)
T ss_dssp TCCEEECTTCCCBHHHHHHHHH
T ss_pred CCCEEEccCCCccCcCHHHHHh
Confidence 9999999999998 66665544
No 67
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.93 E-value=4e-24 Score=214.69 Aligned_cols=268 Identities=25% Similarity=0.324 Sum_probs=183.3
Q ss_pred CCCcEEEcccCcCcccCCccccCCCCCcEEEccccCCCCCCCccccCCCCccEEEecCCccccccccccccCCCccEEEc
Q 040195 110 SELTHLRVANNKLEGQIPKEIGSLLKLQTLALYYNNLTGQLPDFVGNLSALQVIYIRGNSLGGKIPTTLGLLRNLVYLNV 189 (472)
Q Consensus 110 ~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~i~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l 189 (472)
.++++|+++++.++ .+|..+. ++|++|++++|.++ .+|. .+++|++|++++|.++. ++. .+++|++|++
T Consensus 40 ~~l~~L~ls~n~L~-~lp~~l~--~~L~~L~L~~N~l~-~lp~---~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~L 108 (622)
T 3g06_A 40 NGNAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLT-SLPA---LPPELRTLEVSGNQLTS-LPV---LPPGLLELSI 108 (622)
T ss_dssp HCCCEEECCSSCCS-CCCSCCC--TTCSEEEECSCCCS-CCCC---CCTTCCEEEECSCCCSC-CCC---CCTTCCEEEE
T ss_pred CCCcEEEecCCCcC-ccChhhC--CCCcEEEecCCCCC-CCCC---cCCCCCEEEcCCCcCCc-CCC---CCCCCCEEEC
Confidence 35788999998888 5666554 78999999998887 4554 56888999999888873 443 6688888888
Q ss_pred cCCccccccccccccChhhhcCCCCccEEEcccccccccCCccCcCCCCCCEEecCCCcccccccccccccCCCCeEEcC
Q 040195 190 NENQFWYVSSFSGSLPFDILVNLPNLKKLCIAENNFVGSIPDSLSNASNLELLELAGNQFEGKVSIDFSSLKNLAVLNLE 269 (472)
Q Consensus 190 ~~~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~ 269 (472)
++|.+..+. . .+++|+.|++++|.++. +|.. +++|++|++++|.++... . .+++|+.|+++
T Consensus 109 s~N~l~~l~-------~----~l~~L~~L~L~~N~l~~-lp~~---l~~L~~L~Ls~N~l~~l~-~---~~~~L~~L~L~ 169 (622)
T 3g06_A 109 FSNPLTHLP-------A----LPSGLCKLWIFGNQLTS-LPVL---PPGLQELSVSDNQLASLP-A---LPSELCKLWAY 169 (622)
T ss_dssp CSCCCCCCC-------C----CCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSCCC-C---CCTTCCEEECC
T ss_pred cCCcCCCCC-------C----CCCCcCEEECCCCCCCc-CCCC---CCCCCEEECcCCcCCCcC-C---ccCCCCEEECC
Confidence 888874432 2 45778888888888775 3332 478888888888776422 1 34678888888
Q ss_pred CCcCCCCCCCCcchhhhhcccCCCcCCchhhhccccccEEEeecccccCcccccccCccCcceEeccccccccCcchhhc
Q 040195 270 RNNLGIGTANDLGFVTFLTNCSSLKLPHSIANLSSTMTHFYIGGNQILGIIHFGIRNLVNLIALGMQSNQLHGTIPDVIG 349 (472)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~ 349 (472)
+|.+.. ++ ...++|+.|++++|.++.+.. ..++|+.|++++|.+.. ++.
T Consensus 170 ~N~l~~-------------------l~----~~~~~L~~L~Ls~N~l~~l~~----~~~~L~~L~L~~N~l~~-l~~--- 218 (622)
T 3g06_A 170 NNQLTS-------------------LP----MLPSGLQELSVSDNQLASLPT----LPSELYKLWAYNNRLTS-LPA--- 218 (622)
T ss_dssp SSCCSC-------------------CC----CCCTTCCEEECCSSCCSCCCC----CCTTCCEEECCSSCCSS-CCC---
T ss_pred CCCCCC-------------------Cc----ccCCCCcEEECCCCCCCCCCC----ccchhhEEECcCCcccc-cCC---
Confidence 887752 11 112367777777777765432 23677777777777763 332
Q ss_pred CCCCCcEEEccCCcCccccccchhcccccCeeeccCCcccccCCcCccCCCCCceEeecCCcccccCChhhhhhcccceE
Q 040195 350 ELKNLQILSLFGNFLHGSIPSSLGNLTKLANLELSSNSLQGNIPLSVGNCQNLIGFDASHITLTGALPQQLLSITTLSLY 429 (472)
Q Consensus 350 ~~~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ls~~~~~~~~~~~l~~~~~l~~~ 429 (472)
.+++|++|++++|.+++ ++ ..+++|+.|++++|.++ .+|. .+++|+.|++++|.++ .+|..+.++++++ .
T Consensus 219 ~~~~L~~L~Ls~N~L~~-lp---~~l~~L~~L~Ls~N~L~-~lp~---~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~-~ 288 (622)
T 3g06_A 219 LPSGLKELIVSGNRLTS-LP---VLPSELKELMVSGNRLT-SLPM---LPSGLLSLSVYRNQLT-RLPESLIHLSSET-T 288 (622)
T ss_dssp CCTTCCEEECCSSCCSC-CC---CCCTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCC-SCCGGGGGSCTTC-E
T ss_pred CCCCCCEEEccCCccCc-CC---CCCCcCcEEECCCCCCC-cCCc---ccccCcEEeCCCCCCC-cCCHHHhhccccC-E
Confidence 24677777777777763 33 34567777777777776 4444 5667777777777777 6677777777777 7
Q ss_pred EEcCCCcccccccccccCC
Q 040195 430 LDLSHNLLNGSLLLQVGNL 448 (472)
Q Consensus 430 L~ls~n~l~~~~~~~l~~~ 448 (472)
|++++|++++..+..+..+
T Consensus 289 L~L~~N~l~~~~~~~l~~L 307 (622)
T 3g06_A 289 VNLEGNPLSERTLQALREI 307 (622)
T ss_dssp EECCSCCCCHHHHHHHHHH
T ss_pred EEecCCCCCCcCHHHHHhc
Confidence 7777777776666555433
No 68
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.92 E-value=1.2e-24 Score=218.37 Aligned_cols=294 Identities=23% Similarity=0.310 Sum_probs=193.0
Q ss_pred CCCCCCCCCCCCCCCcccccceee------CCCCCceEEEECCCCccCcccCccccCCCCccEEeccCCcCccCcchhhh
Q 040195 10 HDPSGVTSSWNNTINLCQWMGVTC------GHRHQRVTELDLSNQRIGGVLSPYVGNLSFLRYINLSDNGFHGEIPQEIG 83 (472)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~l~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~ 83 (472)
.|+......|.....+|+|.+..+ .-...+++.|+++++.+..... .+. ++|++|++++|.+.. +|.
T Consensus 6 ~~~~~~w~~W~~~~~~~~~~~r~~~~~~~~~c~~~~l~~L~ls~n~L~~lp~-~l~--~~L~~L~L~~N~l~~-lp~--- 78 (622)
T 3g06_A 6 AEYDAVWSAWRRAAPAEESRGRAAVVQKMRACLNNGNAVLNVGESGLTTLPD-CLP--AHITTLVIPDNNLTS-LPA--- 78 (622)
T ss_dssp ----CHHHHHHHTCCGGGHHHHHHHHHHHHHHHHHCCCEEECCSSCCSCCCS-CCC--TTCSEEEECSCCCSC-CCC---
T ss_pred HHHHHHHHHHHhcCCcchhccccccCcccccccCCCCcEEEecCCCcCccCh-hhC--CCCcEEEecCCCCCC-CCC---
Confidence 345556678988889999965421 1112458899999999875533 333 789999999998874 443
Q ss_pred cCCCCCEEEccCcccCCCCCcccCCCCCCcEEEcccCcCcccCCccccCCCCCcEEEccccCCCCCCCccccCCCCccEE
Q 040195 84 NLYRLEKLELSNNSFSGTIPTNLSRCSELTHLRVANNKLEGQIPKEIGSLLKLQTLALYYNNLTGQLPDFVGNLSALQVI 163 (472)
Q Consensus 84 ~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~i~~~~~~~l~~~~~L~~L 163 (472)
.+++|++|++++|.+. .+|. .+++|++|++++|.++. ++. .+++|+.|++++|.++. +|.. +++|++|
T Consensus 79 ~l~~L~~L~Ls~N~l~-~lp~---~l~~L~~L~Ls~N~l~~-l~~---~l~~L~~L~L~~N~l~~-lp~~---l~~L~~L 146 (622)
T 3g06_A 79 LPPELRTLEVSGNQLT-SLPV---LPPGLLELSIFSNPLTH-LPA---LPSGLCKLWIFGNQLTS-LPVL---PPGLQEL 146 (622)
T ss_dssp CCTTCCEEEECSCCCS-CCCC---CCTTCCEEEECSCCCCC-CCC---CCTTCCEEECCSSCCSC-CCCC---CTTCCEE
T ss_pred cCCCCCEEEcCCCcCC-cCCC---CCCCCCEEECcCCcCCC-CCC---CCCCcCEEECCCCCCCc-CCCC---CCCCCEE
Confidence 5788999999999887 4454 67889999999998873 444 56788899998888873 4442 4788888
Q ss_pred EecCCccccccccccccCCCccEEEccCCccccccccccccChhhhcCCCCccEEEcccccccccCCccCcCCCCCCEEe
Q 040195 164 YIRGNSLGGKIPTTLGLLRNLVYLNVNENQFWYVSSFSGSLPFDILVNLPNLKKLCIAENNFVGSIPDSLSNASNLELLE 243 (472)
Q Consensus 164 ~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~ 243 (472)
++++|.+++ ++. .+++|+.|++++|.+..+ + ..+++|+.|++++|.+++ ++. ..++|+.|+
T Consensus 147 ~Ls~N~l~~-l~~---~~~~L~~L~L~~N~l~~l-------~----~~~~~L~~L~Ls~N~l~~-l~~---~~~~L~~L~ 207 (622)
T 3g06_A 147 SVSDNQLAS-LPA---LPSELCKLWAYNNQLTSL-------P----MLPSGLQELSVSDNQLAS-LPT---LPSELYKLW 207 (622)
T ss_dssp ECCSSCCSC-CCC---CCTTCCEEECCSSCCSCC-------C----CCCTTCCEEECCSSCCSC-CCC---CCTTCCEEE
T ss_pred ECcCCcCCC-cCC---ccCCCCEEECCCCCCCCC-------c----ccCCCCcEEECCCCCCCC-CCC---ccchhhEEE
Confidence 888888763 332 346788888888877433 2 245778888888887774 332 246778888
Q ss_pred cCCCcccccccccccccCCCCeEEcCCCcCCCCCCCCcchhhhhcccCCCcCCchhhhccccccEEEeecccccCccccc
Q 040195 244 LAGNQFEGKVSIDFSSLKNLAVLNLERNNLGIGTANDLGFVTFLTNCSSLKLPHSIANLSSTMTHFYIGGNQILGIIHFG 323 (472)
Q Consensus 244 l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~ 323 (472)
+++|.++... . .+++|+.|++++|.++. +| ...++|+.|++++|.++.+..
T Consensus 208 L~~N~l~~l~-~---~~~~L~~L~Ls~N~L~~-------------------lp----~~l~~L~~L~Ls~N~L~~lp~-- 258 (622)
T 3g06_A 208 AYNNRLTSLP-A---LPSGLKELIVSGNRLTS-------------------LP----VLPSELKELMVSGNRLTSLPM-- 258 (622)
T ss_dssp CCSSCCSSCC-C---CCTTCCEEECCSSCCSC-------------------CC----CCCTTCCEEECCSSCCSCCCC--
T ss_pred CcCCcccccC-C---CCCCCCEEEccCCccCc-------------------CC----CCCCcCcEEECCCCCCCcCCc--
Confidence 8887776322 1 24667777777776652 11 111356666666666664332
Q ss_pred ccCccCcceEeccccccccCcchhhcCCCCCcEEEccCCcCccccccchh
Q 040195 324 IRNLVNLIALGMQSNQLHGTIPDVIGELKNLQILSLFGNFLHGSIPSSLG 373 (472)
Q Consensus 324 l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~ 373 (472)
.+++|+.|++++|.+. .+|..+..+++|+.|++++|++.+..+..+.
T Consensus 259 --~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L~~N~l~~~~~~~l~ 305 (622)
T 3g06_A 259 --LPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQALR 305 (622)
T ss_dssp --CCTTCCEEECCSSCCC-SCCGGGGGSCTTCEEECCSCCCCHHHHHHHH
T ss_pred --ccccCcEEeCCCCCCC-cCCHHHhhccccCEEEecCCCCCCcCHHHHH
Confidence 4456666666666666 4455566666666666666666655544443
No 69
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.92 E-value=1e-23 Score=191.65 Aligned_cols=216 Identities=21% Similarity=0.275 Sum_probs=140.2
Q ss_pred CCcccccceeeCCCCCceEEEECCCCccCcccCccccCCCCccEEeccCCcCccCcchhhhcCCCCCEEEccCcccCCCC
Q 040195 23 INLCQWMGVTCGHRHQRVTELDLSNQRIGGVLSPYVGNLSFLRYINLSDNGFHGEIPQEIGNLYRLEKLELSNNSFSGTI 102 (472)
Q Consensus 23 ~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~ 102 (472)
.++|.|.|+.|.- ..+.+.++++++.++.... .+ .+++++|++++|.+....+.+|.++++|++|++++|.+....
T Consensus 2 ~~~C~~~~~~C~c-~~~~~~l~~~~~~l~~ip~-~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~ 77 (270)
T 2o6q_A 2 EALCKKDGGVCSC-NNNKNSVDCSSKKLTAIPS-NI--PADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLP 77 (270)
T ss_dssp CCCBGGGTCSBEE-ETTTTEEECTTSCCSSCCS-CC--CTTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCC
T ss_pred CccCCCCCCCCEe-CCCCCEEEccCCCCCccCC-CC--CCCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeC
Confidence 3789999999842 2456789999988876433 22 257888888888888766677888888888888888887555
Q ss_pred CcccCCCCCCcEEEcccCcCcccCCccccCCCCCcEEEccccCCCCCCCccccCCCCccEEEecCCccccccccccccCC
Q 040195 103 PTNLSRCSELTHLRVANNKLEGQIPKEIGSLLKLQTLALYYNNLTGQLPDFVGNLSALQVIYIRGNSLGGKIPTTLGLLR 182 (472)
Q Consensus 103 ~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~i~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~ 182 (472)
+..|..+++|++|++++|.+....+..+..+++|++|++++|.+....+..+..+++|++|++++|.++...+..+..++
T Consensus 78 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~ 157 (270)
T 2o6q_A 78 AGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLT 157 (270)
T ss_dssp TTTTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCT
T ss_pred hhhhcCCCCCCEEECCCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCc
Confidence 55567788888888888887755555667777788888877777765556666777777777777766644444455666
Q ss_pred CccEEEccCCccccccccccccChhhhcCCCCccEEEcccccccccCCccCcCCCCCCEEecCCCcc
Q 040195 183 NLVYLNVNENQFWYVSSFSGSLPFDILVNLPNLKKLCIAENNFVGSIPDSLSNASNLELLELAGNQF 249 (472)
Q Consensus 183 ~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~~ 249 (472)
+|++|++++|.+. .++...+..+++|+.|++++|.+++..+..+..+++|+.|++++|++
T Consensus 158 ~L~~L~L~~n~l~-------~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~ 217 (270)
T 2o6q_A 158 SLKELRLYNNQLK-------RVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPW 217 (270)
T ss_dssp TCCEEECCSSCCS-------CCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCB
T ss_pred ccceeEecCCcCc-------EeChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCe
Confidence 6666666666542 22222333444444444444444433333344444444444444433
No 70
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.92 E-value=1.2e-25 Score=208.89 Aligned_cols=270 Identities=16% Similarity=0.144 Sum_probs=161.1
Q ss_pred CCCCCCCCCcccccceeeCCCCCceEEEECCCCccCcccCccccCCCCccEEeccCCcCcc-Ccchhhh-------cCCC
Q 040195 16 TSSWNNTINLCQWMGVTCGHRHQRVTELDLSNQRIGGVLSPYVGNLSFLRYINLSDNGFHG-EIPQEIG-------NLYR 87 (472)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~-~~~~~~~-------~l~~ 87 (472)
..+|.....|+.+..+......++++.+++++|.+ ..+..+... |++|+++++.+.. ..+..+. ++++
T Consensus 21 ~~~~~~~~~c~~~~~~~~~~~~~~L~~l~l~~n~l--~~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~ 96 (312)
T 1wwl_A 21 KPDWSSAFNCLGAADVELYGGGRSLEYLLKRVDTE--ADLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISG 96 (312)
T ss_dssp SCCGGGGGGSSSCSEEEEEEEEEECTTHHHHCCTT--CCCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSC
T ss_pred ccchHHHhhhhccccEEEEccCCCceeEeeccccc--ccHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCC
Confidence 45676666666665554433445667777777776 333333332 7777777776632 2343333 5777
Q ss_pred CCEEEccCcccCCCCCccc--CCCCCCcEEEcccCcCcccCCccccCC-----CCCcEEEccccCCCCCCCccccCCCCc
Q 040195 88 LEKLELSNNSFSGTIPTNL--SRCSELTHLRVANNKLEGQIPKEIGSL-----LKLQTLALYYNNLTGQLPDFVGNLSAL 160 (472)
Q Consensus 88 L~~L~L~~~~~~~~~~~~l--~~l~~L~~L~l~~~~~~~~~~~~l~~l-----~~L~~L~l~~~~i~~~~~~~l~~~~~L 160 (472)
|++|++++|.+.+..|..+ ..+++|++|++++|.+++. +..+..+ ++|++|++++|.+.+..+..+..+++|
T Consensus 97 L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L 175 (312)
T 1wwl_A 97 LQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPAL 175 (312)
T ss_dssp CCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSC
T ss_pred ccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCC
Confidence 7777777777776666654 6777777777777777744 5555555 677777777777776655667777777
Q ss_pred cEEEecCCccccc--ccccc--ccCCCccEEEccCCccccccccccccChhhhcCCCCccEEEcccccccccCC-ccCcC
Q 040195 161 QVIYIRGNSLGGK--IPTTL--GLLRNLVYLNVNENQFWYVSSFSGSLPFDILVNLPNLKKLCIAENNFVGSIP-DSLSN 235 (472)
Q Consensus 161 ~~L~l~~~~~~~~--~~~~l--~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~-~~l~~ 235 (472)
++|++++|.+.+. .+..+ ..+++|++|++++|.+..+. .++...+..+++|+.|++++|.+.+..+ ..+..
T Consensus 176 ~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~----~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~ 251 (312)
T 1wwl_A 176 STLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPS----GVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDW 251 (312)
T ss_dssp CEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHH----HHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCC
T ss_pred CEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchH----HHHHHHHhcCCCCCEEECCCCcCCcccchhhhhh
Confidence 7777777765432 12222 56667777777777654321 1222333445566666666665554332 23334
Q ss_pred CCCCCEEecCCCcccccccccccccCCCCeEEcCCCcCCCCCCCCcchhhhhcccCCCcCCchhhhccccccEEEeeccc
Q 040195 236 ASNLELLELAGNQFEGKVSIDFSSLKNLAVLNLERNNLGIGTANDLGFVTFLTNCSSLKLPHSIANLSSTMTHFYIGGNQ 315 (472)
Q Consensus 236 ~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~l~l~~~~ 315 (472)
+++|++|++++|.++ ..+..+. + +++.|++++|.
T Consensus 252 l~~L~~L~Ls~N~l~-~ip~~~~--~-------------------------------------------~L~~L~Ls~N~ 285 (312)
T 1wwl_A 252 PSQLNSLNLSFTGLK-QVPKGLP--A-------------------------------------------KLSVLDLSYNR 285 (312)
T ss_dssp CTTCCEEECTTSCCS-SCCSSCC--S-------------------------------------------EEEEEECCSSC
T ss_pred cCCCCEEECCCCccC-hhhhhcc--C-------------------------------------------CceEEECCCCC
Confidence 455555555555544 2222221 2 56666666666
Q ss_pred ccCcccccccCccCcceEecccccccc
Q 040195 316 ILGIIHFGIRNLVNLIALGMQSNQLHG 342 (472)
Q Consensus 316 ~~~~~~~~l~~~~~L~~L~l~~~~i~~ 342 (472)
++.. +. +..+++|++|++++|.+++
T Consensus 286 l~~~-p~-~~~l~~L~~L~L~~N~l~~ 310 (312)
T 1wwl_A 286 LDRN-PS-PDELPQVGNLSLKGNPFLD 310 (312)
T ss_dssp CCSC-CC-TTTSCEEEEEECTTCTTTC
T ss_pred CCCC-hh-HhhCCCCCEEeccCCCCCC
Confidence 6655 22 6777888888888887764
No 71
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.92 E-value=1.5e-25 Score=208.22 Aligned_cols=255 Identities=21% Similarity=0.260 Sum_probs=171.7
Q ss_pred cCCCCccEEEecCCccccccccccccCCCccEEEccCCccccccccccccChhh------hcCCCCccEEEccccccccc
Q 040195 155 GNLSALQVIYIRGNSLGGKIPTTLGLLRNLVYLNVNENQFWYVSSFSGSLPFDI------LVNLPNLKKLCIAENNFVGS 228 (472)
Q Consensus 155 ~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~------~~~~~~L~~L~l~~~~l~~~ 228 (472)
+..++|+.+++++|.+ ..|..+... |+.|++++|.+... .++... +..+++|++|++++|.+++.
T Consensus 40 ~~~~~L~~l~l~~n~l--~~p~~~~~~--L~~L~L~~n~l~~~-----~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~ 110 (312)
T 1wwl_A 40 GGGRSLEYLLKRVDTE--ADLGQFTDI--IKSLSLKRLTVRAA-----RIPSRILFGALRVLGISGLQELTLENLEVTGT 110 (312)
T ss_dssp EEEEECTTHHHHCCTT--CCCHHHHHH--HHHCCCCEEEEEEE-----ECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSC
T ss_pred ccCCCceeEeeccccc--ccHHHHHHH--HhhcccccccccCC-----CcCHHHHHHHHHhcCcCCccEEEccCCcccch
Confidence 3445566666666666 344433332 66666666655322 111111 11345566666666655544
Q ss_pred CCccC--cCCCCCCEEecCCCcccccccccccccCCCCeEEcCCCcCCCCCCCCcchhhhhcccCCCcCCchhhhccccc
Q 040195 229 IPDSL--SNASNLELLELAGNQFEGKVSIDFSSLKNLAVLNLERNNLGIGTANDLGFVTFLTNCSSLKLPHSIANLSSTM 306 (472)
Q Consensus 229 ~~~~l--~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l 306 (472)
.|..+ ..+++|++|++++|.+++. +..+..++. ...+++
T Consensus 111 ~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~--------------------------------------~~~~~L 151 (312)
T 1wwl_A 111 APPPLLEATGPDLNILNLRNVSWATR-DAWLAELQQ--------------------------------------WLKPGL 151 (312)
T ss_dssp CCCCSSSCCSCCCSEEEEESCBCSSS-SSHHHHHHT--------------------------------------TCCTTC
T ss_pred hHHHHHHhcCCCccEEEccCCCCcch-hHHHHHHHH--------------------------------------hhcCCC
Confidence 44433 4555555555555555433 333333200 001366
Q ss_pred cEEEeecccccCcccccccCccCcceEeccccccccC--cchhh--cCCCCCcEEEccCCcCccc---cccchhcccccC
Q 040195 307 THFYIGGNQILGIIHFGIRNLVNLIALGMQSNQLHGT--IPDVI--GELKNLQILSLFGNFLHGS---IPSSLGNLTKLA 379 (472)
Q Consensus 307 ~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~--~~~~~--~~~~~L~~L~L~~n~l~~~---~~~~l~~~~~L~ 379 (472)
++|++++|.+....+..+..+++|++|++++|.+.+. .+..+ ..+++|++|++++|.+++. ....+..+++|+
T Consensus 152 ~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~ 231 (312)
T 1wwl_A 152 KVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQ 231 (312)
T ss_dssp CEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCS
T ss_pred cEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCC
Confidence 7777777777777767888999999999999987654 23333 7889999999999998732 223445779999
Q ss_pred eeeccCCcccccCC-cCccCCCCCceEeecCCcccccCChhhhhhcccceEEEcCCCcccccccccccCCCCCceEeccC
Q 040195 380 NLELSSNSLQGNIP-LSVGNCQNLIGFDASHITLTGALPQQLLSITTLSLYLDLSHNLLNGSLLLQVGNLKNLILLDISG 458 (472)
Q Consensus 380 ~L~l~~~~~~~~~~-~~~~~~~~L~~L~ls~~~~~~~~~~~l~~~~~l~~~L~ls~n~l~~~~~~~l~~~~~L~~L~L~~ 458 (472)
+|++++|.+++..+ ..+..+++|++|++++|.++ .+|..+. ++++ .|++++|++++. |. +..+++|+.|++++
T Consensus 232 ~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~-~ip~~~~--~~L~-~L~Ls~N~l~~~-p~-~~~l~~L~~L~L~~ 305 (312)
T 1wwl_A 232 GLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKGLP--AKLS-VLDLSYNRLDRN-PS-PDELPQVGNLSLKG 305 (312)
T ss_dssp EEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCS-SCCSSCC--SEEE-EEECCSSCCCSC-CC-TTTSCEEEEEECTT
T ss_pred EEECCCCcCCcccchhhhhhcCCCCEEECCCCccC-hhhhhcc--CCce-EEECCCCCCCCC-hh-HhhCCCCCEEeccC
Confidence 99999999997664 45667899999999999998 7887766 7888 999999999976 55 89999999999999
Q ss_pred Ceecc
Q 040195 459 NQFSG 463 (472)
Q Consensus 459 n~~~~ 463 (472)
|++++
T Consensus 306 N~l~~ 310 (312)
T 1wwl_A 306 NPFLD 310 (312)
T ss_dssp CTTTC
T ss_pred CCCCC
Confidence 99975
No 72
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.91 E-value=1.8e-24 Score=212.92 Aligned_cols=235 Identities=18% Similarity=0.179 Sum_probs=115.6
Q ss_pred CCccEEEccCCccccccccccccChhhhcCCCCccEEEcccccccccCCccCcCCCCCCEEecCCCcccccccccccccC
Q 040195 182 RNLVYLNVNENQFWYVSSFSGSLPFDILVNLPNLKKLCIAENNFVGSIPDSLSNASNLELLELAGNQFEGKVSIDFSSLK 261 (472)
Q Consensus 182 ~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~ 261 (472)
++|++|++++|.+ ..++...+..+++|+.|++++|.+++..+ +..+++|+.|++++|.+++. ...+
T Consensus 34 ~~L~~L~Ls~n~l-------~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l-----~~~~ 99 (487)
T 3oja_A 34 WNVKELDLSGNPL-------SQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQEL-----LVGP 99 (487)
T ss_dssp GGCCEEECCSSCC-------CCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEE-----EECT
T ss_pred CCccEEEeeCCcC-------CCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCC-----CCCC
Confidence 3566666666665 22333445556666666666666654333 55666666666666655532 2235
Q ss_pred CCCeEEcCCCcCCCCCCCCcchhhhhcccCCCcCCchhhhccccccEEEeecccccCcccccccCccCcceEeccccccc
Q 040195 262 NLAVLNLERNNLGIGTANDLGFVTFLTNCSSLKLPHSIANLSSTMTHFYIGGNQILGIIHFGIRNLVNLIALGMQSNQLH 341 (472)
Q Consensus 262 ~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~ 341 (472)
+|+.|++++|.+...... ..++++.|++++|.++...+..+..+++|+.|++++|.+.
T Consensus 100 ~L~~L~L~~N~l~~~~~~----------------------~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~ 157 (487)
T 3oja_A 100 SIETLHAANNNISRVSCS----------------------RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEID 157 (487)
T ss_dssp TCCEEECCSSCCCCEEEC----------------------CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCC
T ss_pred CcCEEECcCCcCCCCCcc----------------------ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCC
Confidence 666666666655421100 0124555555555555544444455555555555555555
Q ss_pred cCcchhhc-CCCCCcEEEccCCcCccccccchhcccccCeeeccCCcccccCCcCccCCCCCceEeecCCcccccCChhh
Q 040195 342 GTIPDVIG-ELKNLQILSLFGNFLHGSIPSSLGNLTKLANLELSSNSLQGNIPLSVGNCQNLIGFDASHITLTGALPQQL 420 (472)
Q Consensus 342 ~~~~~~~~-~~~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ls~~~~~~~~~~~l 420 (472)
+..|..+. .+++|++|++++|.+++.. ....+++|+.|++++|.+++ ++..+..+++|+.|++++|.+. .+|..+
T Consensus 158 ~~~~~~l~~~l~~L~~L~Ls~N~l~~~~--~~~~l~~L~~L~Ls~N~l~~-~~~~~~~l~~L~~L~Ls~N~l~-~lp~~l 233 (487)
T 3oja_A 158 TVNFAELAASSDTLEHLNLQYNFIYDVK--GQVVFAKLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKLV-LIEKAL 233 (487)
T ss_dssp EEEGGGGGGGTTTCCEEECTTSCCCEEE--CCCCCTTCCEEECCSSCCCE-ECGGGGGGTTCSEEECTTSCCC-EECTTC
T ss_pred CcChHHHhhhCCcccEEecCCCcccccc--ccccCCCCCEEECCCCCCCC-CCHhHcCCCCccEEEecCCcCc-ccchhh
Confidence 44444433 3455555555555554331 12234555555555555542 2223444555555555555554 244444
Q ss_pred hhhcccceEEEcCCCccc-ccccccccCCCCCceEecc
Q 040195 421 LSITTLSLYLDLSHNLLN-GSLLLQVGNLKNLILLDIS 457 (472)
Q Consensus 421 ~~~~~l~~~L~ls~n~l~-~~~~~~l~~~~~L~~L~L~ 457 (472)
..+++++ .|++++|.+. +..|..+..++.|+.++++
T Consensus 234 ~~l~~L~-~L~l~~N~l~c~~~~~~~~~l~~L~~l~~~ 270 (487)
T 3oja_A 234 RFSQNLE-HFDLRGNGFHCGTLRDFFSKNQRVQTVAKQ 270 (487)
T ss_dssp CCCTTCC-EEECTTCCBCHHHHHHHHTTCHHHHHHHHH
T ss_pred ccCCCCC-EEEcCCCCCcCcchHHHHHhCCCCcEEecc
Confidence 4444454 5555555444 3333444444444444443
No 73
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.90 E-value=3.8e-24 Score=210.66 Aligned_cols=235 Identities=18% Similarity=0.143 Sum_probs=143.6
Q ss_pred CCccEEEecCCccccccccccccCCCccEEEccCCccccccccccccChhhhcCCCCccEEEcccccccccCCccCcCCC
Q 040195 158 SALQVIYIRGNSLGGKIPTTLGLLRNLVYLNVNENQFWYVSSFSGSLPFDILVNLPNLKKLCIAENNFVGSIPDSLSNAS 237 (472)
Q Consensus 158 ~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~ 237 (472)
++|++|++++|.+++..+..|..+++|++|++++|.+.... + +..+++|+.|++++|.+++.. ..+
T Consensus 34 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~------~---l~~l~~L~~L~Ls~N~l~~l~-----~~~ 99 (487)
T 3oja_A 34 WNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETL------D---LESLSTLRTLDLNNNYVQELL-----VGP 99 (487)
T ss_dssp GGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEE------E---CTTCTTCCEEECCSSEEEEEE-----ECT
T ss_pred CCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCc------c---cccCCCCCEEEecCCcCCCCC-----CCC
Confidence 36777777777776655566677777777777777653321 1 445667777777777666432 236
Q ss_pred CCCEEecCCCcccccccccccccCCCCeEEcCCCcCCCCCCCCcchhhhhcccCCCcCCchhhhccccccEEEeeccccc
Q 040195 238 NLELLELAGNQFEGKVSIDFSSLKNLAVLNLERNNLGIGTANDLGFVTFLTNCSSLKLPHSIANLSSTMTHFYIGGNQIL 317 (472)
Q Consensus 238 ~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~l~l~~~~~~ 317 (472)
+|+.|++++|.+.+..+. .+++|+.|++++|.++.... ..+ ...++|+.|++++|.++
T Consensus 100 ~L~~L~L~~N~l~~~~~~---~l~~L~~L~L~~N~l~~~~~------------------~~~-~~l~~L~~L~Ls~N~l~ 157 (487)
T 3oja_A 100 SIETLHAANNNISRVSCS---RGQGKKNIYLANNKITMLRD------------------LDE-GCRSRVQYLDLKLNEID 157 (487)
T ss_dssp TCCEEECCSSCCCCEEEC---CCSSCEEEECCSSCCCSGGG------------------BCG-GGGSSEEEEECTTSCCC
T ss_pred CcCEEECcCCcCCCCCcc---ccCCCCEEECCCCCCCCCCc------------------hhh-cCCCCCCEEECCCCCCC
Confidence 677777777766644332 34667777777776653111 111 11236677777777776
Q ss_pred Cccccccc-CccCcceEeccccccccCcchhhcCCCCCcEEEccCCcCccccccchhcccccCeeeccCCcccccCCcCc
Q 040195 318 GIIHFGIR-NLVNLIALGMQSNQLHGTIPDVIGELKNLQILSLFGNFLHGSIPSSLGNLTKLANLELSSNSLQGNIPLSV 396 (472)
Q Consensus 318 ~~~~~~l~-~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~ 396 (472)
...+..+. .+++|+.|++++|.+.+..+ ...+++|++|++++|.+++ ++..+..+++|+.|++++|.++ .+|..+
T Consensus 158 ~~~~~~l~~~l~~L~~L~Ls~N~l~~~~~--~~~l~~L~~L~Ls~N~l~~-~~~~~~~l~~L~~L~Ls~N~l~-~lp~~l 233 (487)
T 3oja_A 158 TVNFAELAASSDTLEHLNLQYNFIYDVKG--QVVFAKLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKLV-LIEKAL 233 (487)
T ss_dssp EEEGGGGGGGTTTCCEEECTTSCCCEEEC--CCCCTTCCEEECCSSCCCE-ECGGGGGGTTCSEEECTTSCCC-EECTTC
T ss_pred CcChHHHhhhCCcccEEecCCCccccccc--cccCCCCCEEECCCCCCCC-CCHhHcCCCCccEEEecCCcCc-ccchhh
Confidence 65555554 56777777777777664422 2346777777777777764 3334666777777777777776 356666
Q ss_pred cCCCCCceEeecCCccc-ccCChhhhhhcccceEEEcC
Q 040195 397 GNCQNLIGFDASHITLT-GALPQQLLSITTLSLYLDLS 433 (472)
Q Consensus 397 ~~~~~L~~L~ls~~~~~-~~~~~~l~~~~~l~~~L~ls 433 (472)
..+++|+.|++++|++. +.+|..+..++.++ .++++
T Consensus 234 ~~l~~L~~L~l~~N~l~c~~~~~~~~~l~~L~-~l~~~ 270 (487)
T 3oja_A 234 RFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQ-TVAKQ 270 (487)
T ss_dssp CCCTTCCEEECTTCCBCHHHHHHHHTTCHHHH-HHHHH
T ss_pred ccCCCCCEEEcCCCCCcCcchHHHHHhCCCCc-EEecc
Confidence 66777777777777766 44555555555555 55554
No 74
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.89 E-value=2e-22 Score=183.88 Aligned_cols=204 Identities=21% Similarity=0.175 Sum_probs=112.9
Q ss_pred CccEEeccCCcCccCcchhhhcCCCCCEEEccCcccCCCCCcccCCCCCCcEEEcccCcCcccCCccccCCCCCcEEEcc
Q 040195 63 FLRYINLSDNGFHGEIPQEIGNLYRLEKLELSNNSFSGTIPTNLSRCSELTHLRVANNKLEGQIPKEIGSLLKLQTLALY 142 (472)
Q Consensus 63 ~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~ 142 (472)
+|++|++++|.+....+..+.++++|++|++++|.+.+..+..|..+++|++|++++|.++...+..+.++++|++|+++
T Consensus 29 ~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~ 108 (276)
T 2z62_A 29 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAV 108 (276)
T ss_dssp TCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECT
T ss_pred CccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEECC
Confidence 45556665555554444455555566666666555554444455555666666666665554444555555666666666
Q ss_pred ccCCCCCCCccccCCCCccEEEecCCccccc-cccccccCCCccEEEccCCccccccccccccChhhhcCCCCcc----E
Q 040195 143 YNNLTGQLPDFVGNLSALQVIYIRGNSLGGK-IPTTLGLLRNLVYLNVNENQFWYVSSFSGSLPFDILVNLPNLK----K 217 (472)
Q Consensus 143 ~~~i~~~~~~~l~~~~~L~~L~l~~~~~~~~-~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~L~----~ 217 (472)
+|.+.+..+..+..+++|++|++++|.++.. .+..+..+++|++|++++|.+..+ +...+..+++|+ +
T Consensus 109 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~-------~~~~~~~l~~L~~l~l~ 181 (276)
T 2z62_A 109 ETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSI-------YCTDLRVLHQMPLLNLS 181 (276)
T ss_dssp TSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEE-------CGGGGHHHHTCTTCCEE
T ss_pred CCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcC-------CHHHhhhhhhcccccee
Confidence 6555544444455556666666666655532 345555566666666666655332 112222222333 5
Q ss_pred EEcccccccccCCccCcCCCCCCEEecCCCcccccccccccccCCCCeEEcCCCcCC
Q 040195 218 LCIAENNFVGSIPDSLSNASNLELLELAGNQFEGKVSIDFSSLKNLAVLNLERNNLG 274 (472)
Q Consensus 218 L~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 274 (472)
|++++|.+.+..+..+. ..+|++|++++|.++......+..+++|++|++++|++.
T Consensus 182 L~ls~n~l~~~~~~~~~-~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~ 237 (276)
T 2z62_A 182 LDLSLNPMNFIQPGAFK-EIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWD 237 (276)
T ss_dssp EECCSSCCCEECTTSSC-SCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBC
T ss_pred eecCCCcccccCccccC-CCcccEEECCCCceeecCHhHhcccccccEEEccCCccc
Confidence 66666666644443332 336667777777666555555566677777777777665
No 75
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.89 E-value=4.6e-22 Score=181.52 Aligned_cols=205 Identities=20% Similarity=0.225 Sum_probs=180.5
Q ss_pred CceEEEECCCCccCcccCccccCCCCccEEeccCCcCccCcchhhhcCCCCCEEEccCcccCCCCCcccCCCCCCcEEEc
Q 040195 38 QRVTELDLSNQRIGGVLSPYVGNLSFLRYINLSDNGFHGEIPQEIGNLYRLEKLELSNNSFSGTIPTNLSRCSELTHLRV 117 (472)
Q Consensus 38 ~~l~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l 117 (472)
+++++|++++|.+....+..+..+++|++|++++|.+....+..+.++++|++|++++|.+.+..+..+.++++|++|++
T Consensus 28 ~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l 107 (276)
T 2z62_A 28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA 107 (276)
T ss_dssp TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEEC
T ss_pred CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEEC
Confidence 57999999999999888888999999999999999998777788999999999999999998777788999999999999
Q ss_pred ccCcCcccCCccccCCCCCcEEEccccCCCCC-CCccccCCCCccEEEecCCccccccccccccCCCcc----EEEccCC
Q 040195 118 ANNKLEGQIPKEIGSLLKLQTLALYYNNLTGQ-LPDFVGNLSALQVIYIRGNSLGGKIPTTLGLLRNLV----YLNVNEN 192 (472)
Q Consensus 118 ~~~~~~~~~~~~l~~l~~L~~L~l~~~~i~~~-~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~----~L~l~~~ 192 (472)
++|.+....+..+..+++|++|++++|.+.+. .|..+..+++|++|++++|.+++..+..+..+++|+ +|++++|
T Consensus 108 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n 187 (276)
T 2z62_A 108 VETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLN 187 (276)
T ss_dssp TTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSS
T ss_pred CCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCCC
Confidence 99999866666799999999999999999864 588999999999999999999877667777777777 8999999
Q ss_pred ccccccccccccChhhhcCCCCccEEEcccccccccCCccCcCCCCCCEEecCCCccc
Q 040195 193 QFWYVSSFSGSLPFDILVNLPNLKKLCIAENNFVGSIPDSLSNASNLELLELAGNQFE 250 (472)
Q Consensus 193 ~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~ 250 (472)
.+..+ +...+ ...+|++|++++|.+++..+..+..+++|+.|++++|++.
T Consensus 188 ~l~~~-------~~~~~-~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~ 237 (276)
T 2z62_A 188 PMNFI-------QPGAF-KEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWD 237 (276)
T ss_dssp CCCEE-------CTTSS-CSCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBC
T ss_pred ccccc-------Ccccc-CCCcccEEECCCCceeecCHhHhcccccccEEEccCCccc
Confidence 98544 33333 3348999999999999877777899999999999999987
No 76
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.89 E-value=1.3e-21 Score=177.81 Aligned_cols=203 Identities=25% Similarity=0.314 Sum_probs=177.9
Q ss_pred CccEEeccCCcCccCcchhhhcCCCCCEEEccCcccCCCCCcccCCCCCCcEEEcccCcCcccCCccccCCCCCcEEEcc
Q 040195 63 FLRYINLSDNGFHGEIPQEIGNLYRLEKLELSNNSFSGTIPTNLSRCSELTHLRVANNKLEGQIPKEIGSLLKLQTLALY 142 (472)
Q Consensus 63 ~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~ 142 (472)
+.+.++++++.++. +|..+. +++++|++++|.+....+..|.++++|++|++++|.++...+..+..+++|++|+++
T Consensus 17 ~~~~l~~~~~~l~~-ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~ 93 (270)
T 2o6q_A 17 NKNSVDCSSKKLTA-IPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVT 93 (270)
T ss_dssp TTTEEECTTSCCSS-CCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECC
T ss_pred CCCEEEccCCCCCc-cCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECC
Confidence 57899999999884 554443 689999999999997767789999999999999999986656667899999999999
Q ss_pred ccCCCCCCCccccCCCCccEEEecCCccccccccccccCCCccEEEccCCccccccccccccChhhhcCCCCccEEEccc
Q 040195 143 YNNLTGQLPDFVGNLSALQVIYIRGNSLGGKIPTTLGLLRNLVYLNVNENQFWYVSSFSGSLPFDILVNLPNLKKLCIAE 222 (472)
Q Consensus 143 ~~~i~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~ 222 (472)
+|.+....+..+..+++|++|++++|.++...+..+..+++|++|++++|.+. .++...+..+++|++|++++
T Consensus 94 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-------~~~~~~~~~l~~L~~L~L~~ 166 (270)
T 2o6q_A 94 DNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQ-------SLPKGVFDKLTSLKELRLYN 166 (270)
T ss_dssp SSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-------CCCTTTTTTCTTCCEEECCS
T ss_pred CCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCC-------ccCHhHccCCcccceeEecC
Confidence 99999777777889999999999999999777778899999999999999884 45556677899999999999
Q ss_pred ccccccCCccCcCCCCCCEEecCCCcccccccccccccCCCCeEEcCCCcCCC
Q 040195 223 NNFVGSIPDSLSNASNLELLELAGNQFEGKVSIDFSSLKNLAVLNLERNNLGI 275 (472)
Q Consensus 223 ~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~ 275 (472)
|.++...+..|..+++|+.|++++|.++......+..+++|+.|++++|++.-
T Consensus 167 n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c 219 (270)
T 2o6q_A 167 NQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWDC 219 (270)
T ss_dssp SCCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred CcCcEeChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCeeC
Confidence 99998777789999999999999999987777778899999999999999864
No 77
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.88 E-value=6.5e-22 Score=179.90 Aligned_cols=206 Identities=24% Similarity=0.254 Sum_probs=114.9
Q ss_pred CCCCccEEEcccccccccCCccCcCCCCCCEEecCCCcccccccccccccCCCCeEEcCCCcCCCCCCCCcchhhhhccc
Q 040195 211 NLPNLKKLCIAENNFVGSIPDSLSNASNLELLELAGNQFEGKVSIDFSSLKNLAVLNLERNNLGIGTANDLGFVTFLTNC 290 (472)
Q Consensus 211 ~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~ 290 (472)
.+++|+.|++.++.+... ..++.+++|++|++++|.+++ ...+..+++|++|++++|.+.
T Consensus 39 ~l~~L~~L~l~~~~i~~~--~~l~~l~~L~~L~l~~n~l~~--~~~l~~l~~L~~L~L~~n~l~---------------- 98 (272)
T 3rfs_A 39 ELNSIDQIIANNSDIKSV--QGIQYLPNVRYLALGGNKLHD--ISALKELTNLTYLILTGNQLQ---------------- 98 (272)
T ss_dssp HHTTCCEEECTTSCCCCC--TTGGGCTTCCEEECTTSCCCC--CGGGTTCTTCCEEECTTSCCC----------------
T ss_pred cccceeeeeeCCCCcccc--cccccCCCCcEEECCCCCCCC--chhhcCCCCCCEEECCCCccC----------------
Confidence 456677777777766532 235667777777777776654 234566666666666666554
Q ss_pred CCCcCCchhhhccccccEEEeecccccCcccccccCccCcceEeccccccccCcchhhcCCCCCcEEEccCCcCcccccc
Q 040195 291 SSLKLPHSIANLSSTMTHFYIGGNQILGIIHFGIRNLVNLIALGMQSNQLHGTIPDVIGELKNLQILSLFGNFLHGSIPS 370 (472)
Q Consensus 291 ~~l~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~ 370 (472)
...+..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+++..+.
T Consensus 99 ---------------------------~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~ 151 (272)
T 3rfs_A 99 ---------------------------SLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKG 151 (272)
T ss_dssp ---------------------------CCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTT
T ss_pred ---------------------------ccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHH
Confidence 33333344555555555555555544444455555555555555555544444
Q ss_pred chhcccccCeeeccCCcccccCCcCccCCCCCceEeecCCcccccCChhhhhhcccceEEEcCCCcccccccccccCCCC
Q 040195 371 SLGNLTKLANLELSSNSLQGNIPLSVGNCQNLIGFDASHITLTGALPQQLLSITTLSLYLDLSHNLLNGSLLLQVGNLKN 450 (472)
Q Consensus 371 ~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ls~~~~~~~~~~~l~~~~~l~~~L~ls~n~l~~~~~~~l~~~~~ 450 (472)
.+..+++|++|++++|++++..+..+..+++|+.|++++|.+.+..+..+..+++++ .|++++|++.+ .+++
T Consensus 152 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~-~L~l~~N~~~~-------~~~~ 223 (272)
T 3rfs_A 152 VFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQ-YIWLHDNPWDC-------TCPG 223 (272)
T ss_dssp TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCC-EEECCSSCBCC-------CTTT
T ss_pred HhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCC-EEEccCCCccc-------cCcH
Confidence 445555555555555555544444445555555555555555543334445555555 56665555542 2335
Q ss_pred CceEeccCCeeccccCCcccc
Q 040195 451 LILLDISGNQFSGVIPVTLSI 471 (472)
Q Consensus 451 L~~L~L~~n~~~~~~p~~~~~ 471 (472)
|+.++++.|.+++.+|..+++
T Consensus 224 l~~l~~~~n~~~g~ip~~~~~ 244 (272)
T 3rfs_A 224 IRYLSEWINKHSGVVRNSAGS 244 (272)
T ss_dssp THHHHHHHHHTGGGBBCTTSC
T ss_pred HHHHHHHHHhCCCcccCcccc
Confidence 555555666655555555543
No 78
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.87 E-value=1.3e-23 Score=199.44 Aligned_cols=260 Identities=19% Similarity=0.257 Sum_probs=146.4
Q ss_pred EEccccCCCCCCCccccCCCCccEEEecCCccccccc----cccccCC-CccEEEccCCccccccccccccChhhhcC-C
Q 040195 139 LALYYNNLTGQLPDFVGNLSALQVIYIRGNSLGGKIP----TTLGLLR-NLVYLNVNENQFWYVSSFSGSLPFDILVN-L 212 (472)
Q Consensus 139 L~l~~~~i~~~~~~~l~~~~~L~~L~l~~~~~~~~~~----~~l~~~~-~L~~L~l~~~~l~~~~~~~~~~~~~~~~~-~ 212 (472)
+.++.+.+++..|..+...++|++|++++|.+++..+ ..+..++ +|++|++++|.+.+... ..+ ...+.. .
T Consensus 3 ~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~--~~l-~~~l~~~~ 79 (362)
T 3goz_A 3 YKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNS--DEL-VQILAAIP 79 (362)
T ss_dssp EECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCH--HHH-HHHHHTSC
T ss_pred cccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHH--HHH-HHHHhccC
Confidence 5667777776666666566668888888888876555 5666777 78888888887744321 000 111222 2
Q ss_pred CCccEEEcccccccccCCcc----CcCC-CCCCEEecCCCcccccccccccc-----cCCCCeEEcCCCcCCCCCCCCcc
Q 040195 213 PNLKKLCIAENNFVGSIPDS----LSNA-SNLELLELAGNQFEGKVSIDFSS-----LKNLAVLNLERNNLGIGTANDLG 282 (472)
Q Consensus 213 ~~L~~L~l~~~~l~~~~~~~----l~~~-~~L~~L~l~~~~~~~~~~~~l~~-----l~~L~~L~l~~~~~~~~~~~~~~ 282 (472)
++|++|++++|.+++..+.. +..+ ++|++|++++|.+++.....+.. .++|++|++++|.++..+...
T Consensus 80 ~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~-- 157 (362)
T 3goz_A 80 ANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDE-- 157 (362)
T ss_dssp TTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHH--
T ss_pred CCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHH--
Confidence 77888888888777544432 3344 67888888888776655544332 257777777777765322211
Q ss_pred hhhhhcccCCCcCCchhhhccccccEEEeecccccCcccccc----cCc-cCcceEeccccccccCc----chhhcC-CC
Q 040195 283 FVTFLTNCSSLKLPHSIANLSSTMTHFYIGGNQILGIIHFGI----RNL-VNLIALGMQSNQLHGTI----PDVIGE-LK 352 (472)
Q Consensus 283 ~~~~~~~~~~l~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~l----~~~-~~L~~L~l~~~~i~~~~----~~~~~~-~~ 352 (472)
++..+...++++++|++++|.++...+..+ ..+ ++|++|++++|.+.+.. +..+.. .+
T Consensus 158 ------------l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~ 225 (362)
T 3goz_A 158 ------------LIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPN 225 (362)
T ss_dssp ------------HHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCT
T ss_pred ------------HHHHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCC
Confidence 111122222356666666666655443322 233 36666666666665422 223333 34
Q ss_pred CCcEEEccCCcCccccc----cchhcccccCeeeccCCcccc-------cCCcCccCCCCCceEeecCCccccc
Q 040195 353 NLQILSLFGNFLHGSIP----SSLGNLTKLANLELSSNSLQG-------NIPLSVGNCQNLIGFDASHITLTGA 415 (472)
Q Consensus 353 ~L~~L~L~~n~l~~~~~----~~l~~~~~L~~L~l~~~~~~~-------~~~~~~~~~~~L~~L~ls~~~~~~~ 415 (472)
+|++|++++|.+.+..+ ..+..+++|++|++++|.+.+ .++..+..+++|+.|++++|++.+.
T Consensus 226 ~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~~ 299 (362)
T 3goz_A 226 HVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPS 299 (362)
T ss_dssp TCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCGG
T ss_pred CceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCCc
Confidence 66666666666654322 223445566666666665321 1223444555566666666655543
No 79
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.87 E-value=6.7e-23 Score=192.82 Aligned_cols=118 Identities=17% Similarity=0.199 Sum_probs=57.5
Q ss_pred ccCcc-CcceEecccc--ccc-cCcchhhcCCCCCcEEEccCCc-CccccccchhcccccCeeeccCCc-ccccCCcCcc
Q 040195 324 IRNLV-NLIALGMQSN--QLH-GTIPDVIGELKNLQILSLFGNF-LHGSIPSSLGNLTKLANLELSSNS-LQGNIPLSVG 397 (472)
Q Consensus 324 l~~~~-~L~~L~l~~~--~i~-~~~~~~~~~~~~L~~L~L~~n~-l~~~~~~~l~~~~~L~~L~l~~~~-~~~~~~~~~~ 397 (472)
+..++ +|++|++++| .+. ...+..+..+++|++|++++|. +++..+..+..+++|++|++++|. +.......+.
T Consensus 190 ~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~ 269 (336)
T 2ast_B 190 VAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELG 269 (336)
T ss_dssp HHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGG
T ss_pred HHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHh
Confidence 44455 6666666666 233 2333444555666666666665 444445555555666666666663 2222222344
Q ss_pred CCCCCceEeecCCcccccCChhhhhhcccceEEEcCCCcccccccccc
Q 040195 398 NCQNLIGFDASHITLTGALPQQLLSITTLSLYLDLSHNLLNGSLLLQV 445 (472)
Q Consensus 398 ~~~~L~~L~ls~~~~~~~~~~~l~~~~~l~~~L~ls~n~l~~~~~~~l 445 (472)
.+++|+.|++++| +.+.....+. ..+. .|++++|++++..|..+
T Consensus 270 ~~~~L~~L~l~~~-i~~~~~~~l~--~~l~-~L~l~~n~l~~~~~~~~ 313 (336)
T 2ast_B 270 EIPTLKTLQVFGI-VPDGTLQLLK--EALP-HLQINCSHFTTIARPTI 313 (336)
T ss_dssp GCTTCCEEECTTS-SCTTCHHHHH--HHST-TSEESCCCSCCTTCSSC
T ss_pred cCCCCCEEeccCc-cCHHHHHHHH--hhCc-ceEEecccCccccCCcc
Confidence 5556666666655 3321111111 1133 44455555555544443
No 80
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.87 E-value=7.9e-21 Score=174.05 Aligned_cols=199 Identities=23% Similarity=0.235 Sum_probs=103.4
Q ss_pred CceEEEECCCCccCcccCccccCCCCccEEeccCCcCccCcchhhhcCCCCCEEEccCcccCCCCCcccCCCCCCcEEEc
Q 040195 38 QRVTELDLSNQRIGGVLSPYVGNLSFLRYINLSDNGFHGEIPQEIGNLYRLEKLELSNNSFSGTIPTNLSRCSELTHLRV 117 (472)
Q Consensus 38 ~~l~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l 117 (472)
+++++++++++.+....... .+++++|++++|.+....+..+..+++|++|++++|.+....+ ...+++|++|++
T Consensus 10 ~~l~~l~~~~~~l~~ip~~~---~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~L 84 (290)
T 1p9a_G 10 ASHLEVNCDKRNLTALPPDL---PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQV--DGTLPVLGTLDL 84 (290)
T ss_dssp TTCCEEECTTSCCSSCCSCC---CTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEEC--CSCCTTCCEEEC
T ss_pred CCccEEECCCCCCCcCCCCC---CCCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccC--CCCCCcCCEEEC
Confidence 45666666666655443221 1456666666666655555556666666666666665553221 145555555555
Q ss_pred ccCcCcccCCccccCCCCCcEEEccccCCCCCCCccccCCCCccEEEecCCccccccccccccCCCccEEEccCCccccc
Q 040195 118 ANNKLEGQIPKEIGSLLKLQTLALYYNNLTGQLPDFVGNLSALQVIYIRGNSLGGKIPTTLGLLRNLVYLNVNENQFWYV 197 (472)
Q Consensus 118 ~~~~~~~~~~~~l~~l~~L~~L~l~~~~i~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~ 197 (472)
++|.++ .++..+..+++|++|++++|.++...+..|..+++|++|++++|.++...+..|..+
T Consensus 85 s~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l---------------- 147 (290)
T 1p9a_G 85 SHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPT---------------- 147 (290)
T ss_dssp CSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTC----------------
T ss_pred CCCcCC-cCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccc----------------
Confidence 555555 344445555555555555555554334444555555555555555543333334444
Q ss_pred cccccccChhhhcCCCCccEEEcccccccccCCccCcCCCCCCEEecCCCcccccccccccccCCCCeEEcCCCcCC
Q 040195 198 SSFSGSLPFDILVNLPNLKKLCIAENNFVGSIPDSLSNASNLELLELAGNQFEGKVSIDFSSLKNLAVLNLERNNLG 274 (472)
Q Consensus 198 ~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 274 (472)
++|+.|++++|.++...+..|..+++|+.|++++|.++ ..+..+...++|+.+++++|++.
T Consensus 148 ---------------~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~~~~~L~~l~L~~Np~~ 208 (290)
T 1p9a_G 148 ---------------PKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWL 208 (290)
T ss_dssp ---------------TTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBC
T ss_pred ---------------cCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCC-ccChhhcccccCCeEEeCCCCcc
Confidence 44555555555554443444455555555555555555 23333444555666666666553
No 81
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.86 E-value=1.3e-20 Score=172.64 Aligned_cols=155 Identities=25% Similarity=0.203 Sum_probs=136.8
Q ss_pred CCceEEEECCCCccCcccCccccCCCCccEEeccCCcCccCcchhhhcCCCCCEEEccCcccCCCCCcccCCCCCCcEEE
Q 040195 37 HQRVTELDLSNQRIGGVLSPYVGNLSFLRYINLSDNGFHGEIPQEIGNLYRLEKLELSNNSFSGTIPTNLSRCSELTHLR 116 (472)
Q Consensus 37 ~~~l~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~ 116 (472)
.+++++|++++|.+....+..+..+++|++|++++|.+....+ ...+++|++|++++|.+. .+|..+..+++|++|+
T Consensus 30 ~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~L~~L~ 106 (290)
T 1p9a_G 30 PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQV--DGTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLD 106 (290)
T ss_dssp CTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEEC--CSCCTTCCEEECCSSCCS-SCCCCTTTCTTCCEEE
T ss_pred CCCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccC--CCCCCcCCEEECCCCcCC-cCchhhccCCCCCEEE
Confidence 3789999999999998888899999999999999999885433 378999999999999998 6788889999999999
Q ss_pred cccCcCcccCCccccCCCCCcEEEccccCCCCCCCccccCCCCccEEEecCCccccccccccccCCCccEEEccCCcc
Q 040195 117 VANNKLEGQIPKEIGSLLKLQTLALYYNNLTGQLPDFVGNLSALQVIYIRGNSLGGKIPTTLGLLRNLVYLNVNENQF 194 (472)
Q Consensus 117 l~~~~~~~~~~~~l~~l~~L~~L~l~~~~i~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l 194 (472)
+++|.++...+..|..+++|++|++++|.+....+..+..+++|+.|++++|.++...+..+..+++|++|++++|.+
T Consensus 107 l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l 184 (290)
T 1p9a_G 107 VSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSL 184 (290)
T ss_dssp CCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCC
T ss_pred CCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcC
Confidence 999999976667899999999999999999977777788999999999999999865555667788888888888876
No 82
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.86 E-value=8.2e-23 Score=193.94 Aligned_cols=261 Identities=21% Similarity=0.259 Sum_probs=166.4
Q ss_pred EEEcccCcCcccCCccccCCCCCcEEEccccCCCCCCC----ccccCCC-CccEEEecCCccccccccccccC-----CC
Q 040195 114 HLRVANNKLEGQIPKEIGSLLKLQTLALYYNNLTGQLP----DFVGNLS-ALQVIYIRGNSLGGKIPTTLGLL-----RN 183 (472)
Q Consensus 114 ~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~i~~~~~----~~l~~~~-~L~~L~l~~~~~~~~~~~~l~~~-----~~ 183 (472)
+.+++++.+++..+..+...++|++|++++|.+++..+ ..+..++ +|++|++++|.+++..+..+..+ ++
T Consensus 2 ~~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~ 81 (362)
T 3goz_A 2 NYKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPAN 81 (362)
T ss_dssp EEECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTT
T ss_pred ccccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCC
Confidence 35677777776666656555668888888888875555 5666777 78888888888876655555553 78
Q ss_pred ccEEEccCCccccccccccccChhhhcCC-CCccEEEcccccccccCCcc----CcC-CCCCCEEecCCCccccccccc-
Q 040195 184 LVYLNVNENQFWYVSSFSGSLPFDILVNL-PNLKKLCIAENNFVGSIPDS----LSN-ASNLELLELAGNQFEGKVSID- 256 (472)
Q Consensus 184 L~~L~l~~~~l~~~~~~~~~~~~~~~~~~-~~L~~L~l~~~~l~~~~~~~----l~~-~~~L~~L~l~~~~~~~~~~~~- 256 (472)
|++|++++|.+.+... ......+... ++|++|++++|.+++..+.. +.. .++|++|++++|.+++.....
T Consensus 82 L~~L~Ls~n~l~~~~~---~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l 158 (362)
T 3goz_A 82 VTSLNLSGNFLSYKSS---DELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDEL 158 (362)
T ss_dssp CCEEECCSSCGGGSCH---HHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHH
T ss_pred ccEEECcCCcCChHHH---HHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHH
Confidence 8888888887644321 0011223344 68888888888877654433 233 358888888888877544333
Q ss_pred ---ccccC-CCCeEEcCCCcCCCCCCCCcchhhhhcccCCCcCCchhhhccccccEEEeecccccCcc----cccccC-c
Q 040195 257 ---FSSLK-NLAVLNLERNNLGIGTANDLGFVTFLTNCSSLKLPHSIANLSSTMTHFYIGGNQILGII----HFGIRN-L 327 (472)
Q Consensus 257 ---l~~l~-~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~l~l~~~~~~~~~----~~~l~~-~ 327 (472)
+...+ +|++|++++|.++..+...+ ...+...+++++.|++++|.++... +..+.. .
T Consensus 159 ~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l--------------~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~ 224 (362)
T 3goz_A 159 IQILAAIPANVNSLNLRGNNLASKNCAEL--------------AKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIP 224 (362)
T ss_dssp HHHHHTSCTTCCEEECTTSCGGGSCHHHH--------------HHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSC
T ss_pred HHHHhcCCccccEeeecCCCCchhhHHHH--------------HHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCC
Confidence 34444 78888888887753221110 0111222237888888888877632 223333 3
Q ss_pred cCcceEeccccccccCcc----hhhcCCCCCcEEEccCCcCccc-------cccchhcccccCeeeccCCccccc
Q 040195 328 VNLIALGMQSNQLHGTIP----DVIGELKNLQILSLFGNFLHGS-------IPSSLGNLTKLANLELSSNSLQGN 391 (472)
Q Consensus 328 ~~L~~L~l~~~~i~~~~~----~~~~~~~~L~~L~L~~n~l~~~-------~~~~l~~~~~L~~L~l~~~~~~~~ 391 (472)
++|++|++++|.+.+..+ ..+..+++|++|++++|.+.+. ++..+..+++|++|++++|++...
T Consensus 225 ~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~~ 299 (362)
T 3goz_A 225 NHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPS 299 (362)
T ss_dssp TTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCGG
T ss_pred CCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCCc
Confidence 578888888888876544 3345667888888888874322 233456677788888888887754
No 83
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.86 E-value=4.9e-21 Score=174.11 Aligned_cols=199 Identities=22% Similarity=0.248 Sum_probs=124.5
Q ss_pred ccCCCCccEEeccCCcCccCcchhhhcCCCCCEEEccCcccCCCCCcccCCCCCCcEEEcccCcCcccCCccccCCCCCc
Q 040195 58 VGNLSFLRYINLSDNGFHGEIPQEIGNLYRLEKLELSNNSFSGTIPTNLSRCSELTHLRVANNKLEGQIPKEIGSLLKLQ 137 (472)
Q Consensus 58 l~~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~ 137 (472)
+..+++|+.|+++++.+... ..+..+++|++|++++|.+.+. ..+..+++|++|++++|.++...+..+..+++|+
T Consensus 37 ~~~l~~L~~L~l~~~~i~~~--~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 112 (272)
T 3rfs_A 37 QNELNSIDQIIANNSDIKSV--QGIQYLPNVRYLALGGNKLHDI--SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLK 112 (272)
T ss_dssp HHHHTTCCEEECTTSCCCCC--TTGGGCTTCCEEECTTSCCCCC--GGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCC
T ss_pred cccccceeeeeeCCCCcccc--cccccCCCCcEEECCCCCCCCc--hhhcCCCCCCEEECCCCccCccChhHhcCCcCCC
Confidence 44566666666666665522 2456666667777766666532 3566666677777776666655445566666777
Q ss_pred EEEccccCCCCCCCccccCCCCccEEEecCCccccccccccccCCCccEEEccCCccccccccccccChhhhcCCCCccE
Q 040195 138 TLALYYNNLTGQLPDFVGNLSALQVIYIRGNSLGGKIPTTLGLLRNLVYLNVNENQFWYVSSFSGSLPFDILVNLPNLKK 217 (472)
Q Consensus 138 ~L~l~~~~i~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~L~~ 217 (472)
+|++++|.+.+..+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+. .++...+..+++|+.
T Consensus 113 ~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-------~~~~~~~~~l~~L~~ 185 (272)
T 3rfs_A 113 ELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQ-------SLPEGVFDKLTQLKD 185 (272)
T ss_dssp EEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-------CCCTTTTTTCTTCCE
T ss_pred EEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcC-------ccCHHHhcCCccCCE
Confidence 7777766666555555666667777777777666544455566667777777777652 333344556667777
Q ss_pred EEcccccccccCCccCcCCCCCCEEecCCCcccccccccccccCCCCeEEcCCCcCC
Q 040195 218 LCIAENNFVGSIPDSLSNASNLELLELAGNQFEGKVSIDFSSLKNLAVLNLERNNLG 274 (472)
Q Consensus 218 L~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 274 (472)
|++++|.+++..+..+..+++|+.|++++|.+. +.+++|+.++++.|.++
T Consensus 186 L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~-------~~~~~l~~l~~~~n~~~ 235 (272)
T 3rfs_A 186 LRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWD-------CTCPGIRYLSEWINKHS 235 (272)
T ss_dssp EECCSSCCSCCCTTTTTTCTTCCEEECCSSCBC-------CCTTTTHHHHHHHHHTG
T ss_pred EECCCCcCCccCHHHHhCCcCCCEEEccCCCcc-------ccCcHHHHHHHHHHhCC
Confidence 777777776665566667777777777777654 23556666666666554
No 84
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.86 E-value=3.9e-23 Score=198.16 Aligned_cols=122 Identities=20% Similarity=0.267 Sum_probs=63.5
Q ss_pred CCccccCCCCccEEEecCCccccccc----cccccCCCccEEEccCCccccccccccccChh------hhcCCCCccEEE
Q 040195 150 LPDFVGNLSALQVIYIRGNSLGGKIP----TTLGLLRNLVYLNVNENQFWYVSSFSGSLPFD------ILVNLPNLKKLC 219 (472)
Q Consensus 150 ~~~~l~~~~~L~~L~l~~~~~~~~~~----~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~------~~~~~~~L~~L~ 219 (472)
++..+..+++|++|++++|.++...+ ..+..+++|++|++++|.+..+. +.+|.. .+..+++|++|+
T Consensus 24 l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~---~~~~~~~~~l~~~l~~~~~L~~L~ 100 (386)
T 2ca6_A 24 VFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVK---DEIPEALRLLLQALLKCPKLHTVR 100 (386)
T ss_dssp TSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCG---GGSHHHHHHHHHHHTTCTTCCEEE
T ss_pred HHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccc---cchhHHHHHHHHHHhhCCcccEEE
Confidence 34444555566666666665554322 22445666666666665443221 111211 134556666666
Q ss_pred cccccccc----cCCccCcCCCCCCEEecCCCcccccccccccc----c---------CCCCeEEcCCCcCC
Q 040195 220 IAENNFVG----SIPDSLSNASNLELLELAGNQFEGKVSIDFSS----L---------KNLAVLNLERNNLG 274 (472)
Q Consensus 220 l~~~~l~~----~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~----l---------~~L~~L~l~~~~~~ 274 (472)
+++|.+.. .++..+..+++|+.|++++|.++......+.. + ++|++|++++|.++
T Consensus 101 Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~ 172 (386)
T 2ca6_A 101 LSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLE 172 (386)
T ss_dssp CCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCT
T ss_pred CCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCC
Confidence 66666554 23344556666777777766665433333222 2 56666666666554
No 85
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.86 E-value=1.2e-22 Score=194.78 Aligned_cols=99 Identities=17% Similarity=0.131 Sum_probs=62.8
Q ss_pred ccccccccCCCccEEEccCCccccccccccccChhhhcCCCCccEEEccccccc---ccCCcc-------CcCCCCCCEE
Q 040195 173 KIPTTLGLLRNLVYLNVNENQFWYVSSFSGSLPFDILVNLPNLKKLCIAENNFV---GSIPDS-------LSNASNLELL 242 (472)
Q Consensus 173 ~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~---~~~~~~-------l~~~~~L~~L 242 (472)
.++..+..+++|++|++++|.+..... ......+..+++|+.|++++|.+. +.+|.. +..+++|++|
T Consensus 23 ~l~~~l~~~~~L~~L~L~~n~i~~~~~---~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L 99 (386)
T 2ca6_A 23 SVFAVLLEDDSVKEIVLSGNTIGTEAA---RWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTV 99 (386)
T ss_dssp TTSHHHHHCSCCCEEECTTSEECHHHH---HHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEE
T ss_pred HHHHHHhcCCCccEEECCCCCCCHHHH---HHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEE
Confidence 344566677888888888887644321 001123456788888888876433 223322 3567788888
Q ss_pred ecCCCccccc----ccccccccCCCCeEEcCCCcCC
Q 040195 243 ELAGNQFEGK----VSIDFSSLKNLAVLNLERNNLG 274 (472)
Q Consensus 243 ~l~~~~~~~~----~~~~l~~l~~L~~L~l~~~~~~ 274 (472)
++++|.++.. .+..+..+++|++|++++|.++
T Consensus 100 ~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~ 135 (386)
T 2ca6_A 100 RLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLG 135 (386)
T ss_dssp ECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCH
T ss_pred ECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCC
Confidence 8888877652 3445667778888888777764
No 86
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.86 E-value=1.5e-20 Score=168.78 Aligned_cols=165 Identities=22% Similarity=0.243 Sum_probs=117.0
Q ss_pred CcccccceeeCCCCCceEEEECCCCccCcccCccccCCCCccEEeccCCcCccCcchhhhcCCCCCEEEccCcccCCCCC
Q 040195 24 NLCQWMGVTCGHRHQRVTELDLSNQRIGGVLSPYVGNLSFLRYINLSDNGFHGEIPQEIGNLYRLEKLELSNNSFSGTIP 103 (472)
Q Consensus 24 ~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~ 103 (472)
.|+.|.|..|. ...++++++++.+...... +. ++++.|++++|.+....+..+.++++|++|++++|.+.+..+
T Consensus 3 ~Cp~~~gC~C~---~~~~~l~~~~~~l~~~p~~-~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 76 (251)
T 3m19_A 3 TCETVTGCTCN---EGKKEVDCQGKSLDSVPSG-IP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSA 76 (251)
T ss_dssp -CHHHHSSEEE---GGGTEEECTTCCCSSCCSC-CC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCT
T ss_pred cCCCCCceEcC---CCCeEEecCCCCccccCCC-CC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCH
Confidence 58889999994 3456788988888665433 22 578888888888887777778888888888888888876666
Q ss_pred cccCCCCCCcEEEcccCcCcccCCccccCCCCCcEEEccccCCCCCCCccccCCCCccEEEecCCccccccccccccCCC
Q 040195 104 TNLSRCSELTHLRVANNKLEGQIPKEIGSLLKLQTLALYYNNLTGQLPDFVGNLSALQVIYIRGNSLGGKIPTTLGLLRN 183 (472)
Q Consensus 104 ~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~i~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~ 183 (472)
..|..+++|++|++++|.++...+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++
T Consensus 77 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~ 156 (251)
T 3m19_A 77 GVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTN 156 (251)
T ss_dssp TTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTT
T ss_pred hHhccCCcCCEEECCCCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcC
Confidence 66778888888888888877555566677777777777777777555555566667777777766666444444555555
Q ss_pred ccEEEccCCcc
Q 040195 184 LVYLNVNENQF 194 (472)
Q Consensus 184 L~~L~l~~~~l 194 (472)
|++|++++|.+
T Consensus 157 L~~L~L~~N~l 167 (251)
T 3m19_A 157 LQTLSLSTNQL 167 (251)
T ss_dssp CCEEECCSSCC
T ss_pred CCEEECCCCcC
Confidence 55555555554
No 87
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.85 E-value=1.5e-22 Score=190.44 Aligned_cols=235 Identities=16% Similarity=0.221 Sum_probs=129.1
Q ss_pred cccccceeeCCCCCceEEEECCCCccCcccCccccCC--CCccEEeccCCcCccCcchhhhcCCCCCEEEccCcccCCC-
Q 040195 25 LCQWMGVTCGHRHQRVTELDLSNQRIGGVLSPYVGNL--SFLRYINLSDNGFHGEIPQEIGNLYRLEKLELSNNSFSGT- 101 (472)
Q Consensus 25 ~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~l~~~--~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~- 101 (472)
|..|..+.+.+ ..+++++++++.+.. ..+..+ ++++.|+++++.+.+..+. +..+++|++|++++|.+.+.
T Consensus 36 c~~W~~~~~~~--~~~~~l~l~~~~~~~---~~~~~~~~~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~ 109 (336)
T 2ast_B 36 CKRWYRLASDE--SLWQTLDLTGKNLHP---DVTGRLLSQGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVST 109 (336)
T ss_dssp CHHHHHHHTCS--TTSSEEECTTCBCCH---HHHHHHHHTTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHH
T ss_pred HHHHHHHhcCc--hhheeeccccccCCH---HHHHhhhhccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHH
Confidence 44555555432 345667777766542 234444 6667777776666544333 34566677777766665533
Q ss_pred CCcccCCCCCCcEEEcccCcCcccCCccccCCCCCcEEEcccc-CCCCC-CCccccCCCCccEEEecCC-ccccc-cccc
Q 040195 102 IPTNLSRCSELTHLRVANNKLEGQIPKEIGSLLKLQTLALYYN-NLTGQ-LPDFVGNLSALQVIYIRGN-SLGGK-IPTT 177 (472)
Q Consensus 102 ~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~-~i~~~-~~~~l~~~~~L~~L~l~~~-~~~~~-~~~~ 177 (472)
.+..+..+++|++|++++|.++...+..+..+++|++|++++| .+++. .+..+..+++|++|++++| .+++. .+..
T Consensus 110 ~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~ 189 (336)
T 2ast_B 110 LHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVA 189 (336)
T ss_dssp HHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHH
T ss_pred HHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHH
Confidence 4455566666666666666665555555666666666666666 44431 3444555666666666666 55532 3344
Q ss_pred cccCC-CccEEEccCCc--cccccccccccChhhhcCCCCccEEEccccc-ccccCCccCcCCCCCCEEecCCC-ccccc
Q 040195 178 LGLLR-NLVYLNVNENQ--FWYVSSFSGSLPFDILVNLPNLKKLCIAENN-FVGSIPDSLSNASNLELLELAGN-QFEGK 252 (472)
Q Consensus 178 l~~~~-~L~~L~l~~~~--l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~-l~~~~~~~l~~~~~L~~L~l~~~-~~~~~ 252 (472)
+..++ +|++|++++|. +.+ +.+ ...+..+++|++|++++|. +++..+..+..+++|+.|++++| .+.+.
T Consensus 190 ~~~l~~~L~~L~l~~~~~~~~~-----~~l-~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~ 263 (336)
T 2ast_B 190 VAHVSETITQLNLSGYRKNLQK-----SDL-STLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPE 263 (336)
T ss_dssp HHHSCTTCCEEECCSCGGGSCH-----HHH-HHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGG
T ss_pred HHhcccCCCEEEeCCCcccCCH-----HHH-HHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHH
Confidence 55566 66666666663 211 001 1223345666666666665 44444445555566666666665 23322
Q ss_pred ccccccccCCCCeEEcCCC
Q 040195 253 VSIDFSSLKNLAVLNLERN 271 (472)
Q Consensus 253 ~~~~l~~l~~L~~L~l~~~ 271 (472)
....+..+++|++|++++|
T Consensus 264 ~~~~l~~~~~L~~L~l~~~ 282 (336)
T 2ast_B 264 TLLELGEIPTLKTLQVFGI 282 (336)
T ss_dssp GGGGGGGCTTCCEEECTTS
T ss_pred HHHHHhcCCCCCEEeccCc
Confidence 2334555555666655555
No 88
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.85 E-value=1.1e-20 Score=168.44 Aligned_cols=198 Identities=17% Similarity=0.198 Sum_probs=161.9
Q ss_pred CCccEEeccCCcCccCcchhhhcCCCCCEEEccCcc-cCCCCCcccCCCCCCcEEEccc-CcCcccCCccccCCCCCcEE
Q 040195 62 SFLRYINLSDNGFHGEIPQEIGNLYRLEKLELSNNS-FSGTIPTNLSRCSELTHLRVAN-NKLEGQIPKEIGSLLKLQTL 139 (472)
Q Consensus 62 ~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~-~~~~~~~~l~~l~~L~~L~l~~-~~~~~~~~~~l~~l~~L~~L 139 (472)
++|++|++++|.+....+..|.++++|++|++++|. +....+..|..+++|++|++++ |.++...+..|..+++|++|
T Consensus 31 ~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L 110 (239)
T 2xwt_C 31 PSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFL 110 (239)
T ss_dssp TTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEE
T ss_pred CcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEE
Confidence 378999999999887777788899999999999996 7756666788999999999998 88886666778899999999
Q ss_pred EccccCCCCCCCccccCCCCcc---EEEecCC-ccccccccccccCCCcc-EEEccCCccccccccccccChhhhcCCCC
Q 040195 140 ALYYNNLTGQLPDFVGNLSALQ---VIYIRGN-SLGGKIPTTLGLLRNLV-YLNVNENQFWYVSSFSGSLPFDILVNLPN 214 (472)
Q Consensus 140 ~l~~~~i~~~~~~~l~~~~~L~---~L~l~~~-~~~~~~~~~l~~~~~L~-~L~l~~~~l~~~~~~~~~~~~~~~~~~~~ 214 (472)
++++|.+.+ +|. +..+++|+ +|++++| .++...+..|..+++|+ +|++++|.+. .++...+.. ++
T Consensus 111 ~l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~-------~i~~~~~~~-~~ 180 (239)
T 2xwt_C 111 GIFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFT-------SVQGYAFNG-TK 180 (239)
T ss_dssp EEEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCC-------EECTTTTTT-CE
T ss_pred eCCCCCCcc-ccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCc-------ccCHhhcCC-CC
Confidence 999999884 565 77888887 9999999 88866666788899999 9999999874 344445545 78
Q ss_pred ccEEEccccc-ccccCCccCcCC-CCCCEEecCCCcccccccccccccCCCCeEEcCCCc
Q 040195 215 LKKLCIAENN-FVGSIPDSLSNA-SNLELLELAGNQFEGKVSIDFSSLKNLAVLNLERNN 272 (472)
Q Consensus 215 L~~L~l~~~~-l~~~~~~~l~~~-~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 272 (472)
|++|++++|. ++...+..|..+ ++|+.|++++|.++..... .+++|+.|+++++.
T Consensus 181 L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~l~~~---~~~~L~~L~l~~~~ 237 (239)
T 2xwt_C 181 LDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSK---GLEHLKELIARNTW 237 (239)
T ss_dssp EEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCCCCCCT---TCTTCSEEECTTC-
T ss_pred CCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCccccCChh---HhccCceeeccCcc
Confidence 9999999995 887777788888 9999999999999754333 67889999988753
No 89
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.84 E-value=1.4e-20 Score=174.65 Aligned_cols=207 Identities=17% Similarity=0.156 Sum_probs=142.4
Q ss_pred CCCccEEeccCCcCccCcch---hhhcCCCCCEEEccCcccCCCCCccc--CCCCCCcEEEcccCcCcccCC----cccc
Q 040195 61 LSFLRYINLSDNGFHGEIPQ---EIGNLYRLEKLELSNNSFSGTIPTNL--SRCSELTHLRVANNKLEGQIP----KEIG 131 (472)
Q Consensus 61 ~~~L~~L~L~~~~~~~~~~~---~~~~l~~L~~L~L~~~~~~~~~~~~l--~~l~~L~~L~l~~~~~~~~~~----~~l~ 131 (472)
...++.+.+.++.+...... .+..+++|++|++++|.+.+..|..+ ..+++|++|++++|.++...+ ..+.
T Consensus 63 ~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~ 142 (310)
T 4glp_A 63 ALRVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQW 142 (310)
T ss_dssp SCCCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTT
T ss_pred hcceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhh
Confidence 34577888887766532111 12345779999999999887777777 888999999999998875433 3345
Q ss_pred CCCCCcEEEccccCCCCCCCccccCCCCccEEEecCCccccc--c--ccccccCCCccEEEccCCccccccccccccChh
Q 040195 132 SLLKLQTLALYYNNLTGQLPDFVGNLSALQVIYIRGNSLGGK--I--PTTLGLLRNLVYLNVNENQFWYVSSFSGSLPFD 207 (472)
Q Consensus 132 ~l~~L~~L~l~~~~i~~~~~~~l~~~~~L~~L~l~~~~~~~~--~--~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~ 207 (472)
.+++|++|++++|.+.+..+..+..+++|++|++++|.+.+. . ...+..+++|++|++++|.+..++. .+..
T Consensus 143 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~----~~~~ 218 (310)
T 4glp_A 143 LKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTG----VCAA 218 (310)
T ss_dssp BCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHH----HHHH
T ss_pred hccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHH----HHHH
Confidence 688999999999998877778888889999999999886532 1 2234677888888888888743321 1112
Q ss_pred hhcCCCCccEEEcccccccccCCccCcCC---CCCCEEecCCCcccccccccccccCCCCeEEcCCCcCC
Q 040195 208 ILVNLPNLKKLCIAENNFVGSIPDSLSNA---SNLELLELAGNQFEGKVSIDFSSLKNLAVLNLERNNLG 274 (472)
Q Consensus 208 ~~~~~~~L~~L~l~~~~l~~~~~~~l~~~---~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 274 (472)
.+..+++|++|++++|.+.+..|..+..+ ++|++|++++|.++ ..+..+. ++|+.|++++|+++
T Consensus 219 l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~ 285 (310)
T 4glp_A 219 LAAAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLE-QVPKGLP--AKLRVLDLSSNRLN 285 (310)
T ss_dssp HHHHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCC-SCCSCCC--SCCSCEECCSCCCC
T ss_pred HHhcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCC-chhhhhc--CCCCEEECCCCcCC
Confidence 34566788888888888776655555554 57777777777776 3333332 56666666666553
No 90
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.84 E-value=2.6e-20 Score=166.05 Aligned_cols=198 Identities=15% Similarity=0.149 Sum_probs=168.6
Q ss_pred CCceEEEECCCCccCcccCccccCCCCccEEeccCCc-CccCcchhhhcCCCCCEEEccC-cccCCCCCcccCCCCCCcE
Q 040195 37 HQRVTELDLSNQRIGGVLSPYVGNLSFLRYINLSDNG-FHGEIPQEIGNLYRLEKLELSN-NSFSGTIPTNLSRCSELTH 114 (472)
Q Consensus 37 ~~~l~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~~~-~~~~~~~~~~~l~~L~~L~L~~-~~~~~~~~~~l~~l~~L~~ 114 (472)
.+++++|++++|.+.......+..+++|++|++++|. +....+.+|.++++|++|++++ |.+....+..|..+++|++
T Consensus 30 ~~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~ 109 (239)
T 2xwt_C 30 PPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKF 109 (239)
T ss_dssp CTTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCE
T ss_pred CCcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCE
Confidence 3589999999999999888899999999999999997 8867777899999999999998 8888666778999999999
Q ss_pred EEcccCcCcccCCccccCCCCCc---EEEcccc-CCCCCCCccccCCCCcc-EEEecCCccccccccccccCCCccEEEc
Q 040195 115 LRVANNKLEGQIPKEIGSLLKLQ---TLALYYN-NLTGQLPDFVGNLSALQ-VIYIRGNSLGGKIPTTLGLLRNLVYLNV 189 (472)
Q Consensus 115 L~l~~~~~~~~~~~~l~~l~~L~---~L~l~~~-~i~~~~~~~l~~~~~L~-~L~l~~~~~~~~~~~~l~~~~~L~~L~l 189 (472)
|++++|.++. ++. +..+++|+ +|++++| .+....+..+..+++|+ +|++++|.++......+.. ++|++|++
T Consensus 110 L~l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~~~~~-~~L~~L~L 186 (239)
T 2xwt_C 110 LGIFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNG-TKLDAVYL 186 (239)
T ss_dssp EEEEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEECTTTTTT-CEEEEEEC
T ss_pred EeCCCCCCcc-ccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcccCHhhcCC-CCCCEEEc
Confidence 9999999984 555 88888888 9999999 89866667789999999 9999999998433344444 89999999
Q ss_pred cCCc-cccccccccccChhhhcCC-CCccEEEcccccccccCCccCcCCCCCCEEecCCC
Q 040195 190 NENQ-FWYVSSFSGSLPFDILVNL-PNLKKLCIAENNFVGSIPDSLSNASNLELLELAGN 247 (472)
Q Consensus 190 ~~~~-l~~~~~~~~~~~~~~~~~~-~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~~ 247 (472)
++|+ + ..++...+..+ ++|+.|++++|.++...+. .+++|+.|.++++
T Consensus 187 ~~n~~l-------~~i~~~~~~~l~~~L~~L~l~~N~l~~l~~~---~~~~L~~L~l~~~ 236 (239)
T 2xwt_C 187 NKNKYL-------TVIDKDAFGGVYSGPSLLDVSQTSVTALPSK---GLEHLKELIARNT 236 (239)
T ss_dssp TTCTTC-------CEECTTTTTTCSBCCSEEECTTCCCCCCCCT---TCTTCSEEECTTC
T ss_pred CCCCCc-------ccCCHHHhhccccCCcEEECCCCccccCChh---HhccCceeeccCc
Confidence 9995 7 44555667788 9999999999999864433 5788999998875
No 91
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.84 E-value=5.5e-21 Score=177.32 Aligned_cols=152 Identities=23% Similarity=0.242 Sum_probs=116.4
Q ss_pred cccEEEeecccccCcccccccCccCcceEeccccccccC--c--chhhcCCCCCcEEEccCCcCcccccc----chhccc
Q 040195 305 TMTHFYIGGNQILGIIHFGIRNLVNLIALGMQSNQLHGT--I--PDVIGELKNLQILSLFGNFLHGSIPS----SLGNLT 376 (472)
Q Consensus 305 ~l~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~--~--~~~~~~~~~L~~L~L~~n~l~~~~~~----~l~~~~ 376 (472)
+++.|++++|.+....+..+..+++|++|++++|.+.+. . +..++.+++|++|++++|.++. .+. .+..++
T Consensus 146 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~~l~ 224 (310)
T 4glp_A 146 GLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMET-PTGVCAALAAAGV 224 (310)
T ss_dssp CCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCC-HHHHHHHHHHHTC
T ss_pred CCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCc-hHHHHHHHHhcCC
Confidence 555666666666666666777888889999988886542 1 2234678899999999998862 222 246778
Q ss_pred ccCeeeccCCcccccCCcCccCC---CCCceEeecCCcccccCChhhhhhcccceEEEcCCCcccccccccccCCCCCce
Q 040195 377 KLANLELSSNSLQGNIPLSVGNC---QNLIGFDASHITLTGALPQQLLSITTLSLYLDLSHNLLNGSLLLQVGNLKNLIL 453 (472)
Q Consensus 377 ~L~~L~l~~~~~~~~~~~~~~~~---~~L~~L~ls~~~~~~~~~~~l~~~~~l~~~L~ls~n~l~~~~~~~l~~~~~L~~ 453 (472)
+|++|++++|.+++..|..+..+ ++|+.|++++|.++ .+|..+. ++++ .|++++|++++. |. +..+++|+.
T Consensus 225 ~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~--~~L~-~L~Ls~N~l~~~-~~-~~~l~~L~~ 298 (310)
T 4glp_A 225 QPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLE-QVPKGLP--AKLR-VLDLSSNRLNRA-PQ-PDELPEVDN 298 (310)
T ss_dssp CCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCC-SCCSCCC--SCCS-CEECCSCCCCSC-CC-TTSCCCCSC
T ss_pred CCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCC-chhhhhc--CCCC-EEECCCCcCCCC-ch-hhhCCCccE
Confidence 99999999999987767666666 69999999999998 6777664 7888 999999999864 33 678899999
Q ss_pred EeccCCeecc
Q 040195 454 LDISGNQFSG 463 (472)
Q Consensus 454 L~L~~n~~~~ 463 (472)
|+|++|++++
T Consensus 299 L~L~~N~l~~ 308 (310)
T 4glp_A 299 LTLDGNPFLV 308 (310)
T ss_dssp EECSSTTTSC
T ss_pred EECcCCCCCC
Confidence 9999999875
No 92
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.84 E-value=4.1e-20 Score=165.95 Aligned_cols=160 Identities=23% Similarity=0.218 Sum_probs=140.4
Q ss_pred ccccEEEeecccccCcccccccCccCcceEeccccccccCcchhhcCCCCCcEEEccCCcCccccccchhcccccCeeec
Q 040195 304 STMTHFYIGGNQILGIIHFGIRNLVNLIALGMQSNQLHGTIPDVIGELKNLQILSLFGNFLHGSIPSSLGNLTKLANLEL 383 (472)
Q Consensus 304 ~~l~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l 383 (472)
+.++.|+++++.+....+..|..+++|++|++++|.+.+..+..|..+++|++|++++|.+++..+..+..+++|++|++
T Consensus 35 ~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 114 (251)
T 3m19_A 35 ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYL 114 (251)
T ss_dssp TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCCcccccChhHhcccCCCCEEEc
Confidence 47899999999999888888999999999999999999888888889999999999999998777778889999999999
Q ss_pred cCCcccccCCcCccCCCCCceEeecCCcccccCChhhhhhcccceEEEcCCCcccccccccccCCCCCceEeccCCeecc
Q 040195 384 SSNSLQGNIPLSVGNCQNLIGFDASHITLTGALPQQLLSITTLSLYLDLSHNLLNGSLLLQVGNLKNLILLDISGNQFSG 463 (472)
Q Consensus 384 ~~~~~~~~~~~~~~~~~~L~~L~ls~~~~~~~~~~~l~~~~~l~~~L~ls~n~l~~~~~~~l~~~~~L~~L~L~~n~~~~ 463 (472)
++|.++...+..+..+++|+.|++++|.+.+..+..+..+++|+ .|++++|++++..+..|..+++|+.|+|++|+++.
T Consensus 115 ~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~-~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c 193 (251)
T 3m19_A 115 GGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQ-TLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDC 193 (251)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCC-EEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCT
T ss_pred CCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCC-EEECCCCcCCccCHHHHhCCCCCCEEEeeCCceeC
Confidence 99999966666678899999999999999854445788889999 99999999998777789999999999999999875
Q ss_pred c
Q 040195 464 V 464 (472)
Q Consensus 464 ~ 464 (472)
.
T Consensus 194 ~ 194 (251)
T 3m19_A 194 S 194 (251)
T ss_dssp T
T ss_pred C
Confidence 4
No 93
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.84 E-value=5e-20 Score=170.44 Aligned_cols=194 Identities=24% Similarity=0.344 Sum_probs=117.3
Q ss_pred ccCCCccEEEccCCccccccccccccChhhhcCCCCccEEEcccccccccCCccCcCCCCCCEEecCCCccccccccccc
Q 040195 179 GLLRNLVYLNVNENQFWYVSSFSGSLPFDILVNLPNLKKLCIAENNFVGSIPDSLSNASNLELLELAGNQFEGKVSIDFS 258 (472)
Q Consensus 179 ~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~ 258 (472)
..+++|++|++++|.+..+. .+..+++|+.|++++|.+.+..+ +..+++|+.|++++|.+++. ..+.
T Consensus 38 ~~l~~L~~L~l~~~~i~~l~---------~~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~l~~~--~~~~ 104 (308)
T 1h6u_A 38 ADLDGITTLSAFGTGVTTIE---------GVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKNV--SAIA 104 (308)
T ss_dssp HHHHTCCEEECTTSCCCCCT---------TGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCSCC--GGGT
T ss_pred HHcCCcCEEEeeCCCccCch---------hhhccCCCCEEEccCCcCCCChh--HccCCCCCEEEccCCcCCCc--hhhc
Confidence 34556666666666553221 13345555555555555543222 45555555555555555432 2344
Q ss_pred ccCCCCeEEcCCCcCCCCCCCCcchhhhhcccCCCcCCchhhhccccccEEEeecccccCcccccccCccCcceEecccc
Q 040195 259 SLKNLAVLNLERNNLGIGTANDLGFVTFLTNCSSLKLPHSIANLSSTMTHFYIGGNQILGIIHFGIRNLVNLIALGMQSN 338 (472)
Q Consensus 259 ~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~ 338 (472)
.+++|++|++++|. ++... .+..+++|++|++++|
T Consensus 105 ~l~~L~~L~l~~n~-------------------------------------------l~~~~--~l~~l~~L~~L~l~~n 139 (308)
T 1h6u_A 105 GLQSIKTLDLTSTQ-------------------------------------------ITDVT--PLAGLSNLQVLYLDLN 139 (308)
T ss_dssp TCTTCCEEECTTSC-------------------------------------------CCCCG--GGTTCTTCCEEECCSS
T ss_pred CCCCCCEEECCCCC-------------------------------------------CCCch--hhcCCCCCCEEECCCC
Confidence 44444444444443 33321 2566777888888888
Q ss_pred ccccCcchhhcCCCCCcEEEccCCcCccccccchhcccccCeeeccCCcccccCCcCccCCCCCceEeecCCcccccCCh
Q 040195 339 QLHGTIPDVIGELKNLQILSLFGNFLHGSIPSSLGNLTKLANLELSSNSLQGNIPLSVGNCQNLIGFDASHITLTGALPQ 418 (472)
Q Consensus 339 ~i~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ls~~~~~~~~~~ 418 (472)
.+.+..+ +..+++|++|++++|.+.+..+ +..+++|++|++++|.+++..+ +..+++|+.|++++|++.+ ++
T Consensus 140 ~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~L~~N~l~~-~~- 211 (308)
T 1h6u_A 140 QITNISP--LAGLTNLQYLSIGNAQVSDLTP--LANLSKLTTLKADDNKISDISP--LASLPNLIEVHLKNNQISD-VS- 211 (308)
T ss_dssp CCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECTTSCCCB-CG-
T ss_pred ccCcCcc--ccCCCCccEEEccCCcCCCChh--hcCCCCCCEEECCCCccCcChh--hcCCCCCCEEEccCCccCc-cc-
Confidence 7775433 6677888888888887774332 6777788888888887774322 6677778888888887773 33
Q ss_pred hhhhhcccceEEEcCCCcccc
Q 040195 419 QLLSITTLSLYLDLSHNLLNG 439 (472)
Q Consensus 419 ~l~~~~~l~~~L~ls~n~l~~ 439 (472)
.+..+++++ .|++++|++++
T Consensus 212 ~l~~l~~L~-~L~l~~N~i~~ 231 (308)
T 1h6u_A 212 PLANTSNLF-IVTLTNQTITN 231 (308)
T ss_dssp GGTTCTTCC-EEEEEEEEEEC
T ss_pred cccCCCCCC-EEEccCCeeec
Confidence 367777777 78888777764
No 94
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.82 E-value=1.2e-19 Score=167.96 Aligned_cols=194 Identities=26% Similarity=0.357 Sum_probs=133.2
Q ss_pred ccCCCCccEEeccCCcCccCcchhhhcCCCCCEEEccCcccCCCCCcccCCCCCCcEEEcccCcCcccCCccccCCCCCc
Q 040195 58 VGNLSFLRYINLSDNGFHGEIPQEIGNLYRLEKLELSNNSFSGTIPTNLSRCSELTHLRVANNKLEGQIPKEIGSLLKLQ 137 (472)
Q Consensus 58 l~~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~ 137 (472)
...+++|++|+++++.+.. .+ .+..+++|++|++++|.+.+. +. +..+++|++|++++|.++. . ..+..+++|+
T Consensus 37 ~~~l~~L~~L~l~~~~i~~-l~-~~~~l~~L~~L~L~~n~i~~~-~~-~~~l~~L~~L~L~~n~l~~-~-~~~~~l~~L~ 110 (308)
T 1h6u_A 37 QADLDGITTLSAFGTGVTT-IE-GVQYLNNLIGLELKDNQITDL-AP-LKNLTKITELELSGNPLKN-V-SAIAGLQSIK 110 (308)
T ss_dssp HHHHHTCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCC-GG-GTTCCSCCEEECCSCCCSC-C-GGGTTCTTCC
T ss_pred HHHcCCcCEEEeeCCCccC-ch-hhhccCCCCEEEccCCcCCCC-hh-HccCCCCCEEEccCCcCCC-c-hhhcCCCCCC
Confidence 3456677777777777663 23 467777777777777777643 33 6777777777777777763 2 3577777777
Q ss_pred EEEccccCCCCCCCccccCCCCccEEEecCCccccccccccccCCCccEEEccCCccccccccccccChhhhcCCCCccE
Q 040195 138 TLALYYNNLTGQLPDFVGNLSALQVIYIRGNSLGGKIPTTLGLLRNLVYLNVNENQFWYVSSFSGSLPFDILVNLPNLKK 217 (472)
Q Consensus 138 ~L~l~~~~i~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~L~~ 217 (472)
+|++++|.+.+ .+ .+..+++|++|++++|.+++.. .+..+++|++|++++|.+.++. . +..+++|+.
T Consensus 111 ~L~l~~n~l~~-~~-~l~~l~~L~~L~l~~n~l~~~~--~l~~l~~L~~L~l~~n~l~~~~-------~--l~~l~~L~~ 177 (308)
T 1h6u_A 111 TLDLTSTQITD-VT-PLAGLSNLQVLYLDLNQITNIS--PLAGLTNLQYLSIGNAQVSDLT-------P--LANLSKLTT 177 (308)
T ss_dssp EEECTTSCCCC-CG-GGTTCTTCCEEECCSSCCCCCG--GGGGCTTCCEEECCSSCCCCCG-------G--GTTCTTCCE
T ss_pred EEECCCCCCCC-ch-hhcCCCCCCEEECCCCccCcCc--cccCCCCccEEEccCCcCCCCh-------h--hcCCCCCCE
Confidence 77777777764 33 2677777777777777776432 2667777888888777764332 1 456777888
Q ss_pred EEcccccccccCCccCcCCCCCCEEecCCCcccccccccccccCCCCeEEcCCCcCC
Q 040195 218 LCIAENNFVGSIPDSLSNASNLELLELAGNQFEGKVSIDFSSLKNLAVLNLERNNLG 274 (472)
Q Consensus 218 L~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 274 (472)
|++++|.+++..+ +..+++|+.|++++|.+++.. .+..+++|+.|++++|+++
T Consensus 178 L~l~~n~l~~~~~--l~~l~~L~~L~L~~N~l~~~~--~l~~l~~L~~L~l~~N~i~ 230 (308)
T 1h6u_A 178 LKADDNKISDISP--LASLPNLIEVHLKNNQISDVS--PLANTSNLFIVTLTNQTIT 230 (308)
T ss_dssp EECCSSCCCCCGG--GGGCTTCCEEECTTSCCCBCG--GGTTCTTCCEEEEEEEEEE
T ss_pred EECCCCccCcChh--hcCCCCCCEEEccCCccCccc--cccCCCCCCEEEccCCeee
Confidence 8888877765432 677788888888888776544 3677788888888888765
No 95
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.78 E-value=5.5e-19 Score=153.80 Aligned_cols=161 Identities=21% Similarity=0.187 Sum_probs=141.8
Q ss_pred ccccEEEeecccccCcccccccCccCcceEeccccccccCcchhhcCCCCCcEEEccCCcCccccccchhcccccCeeec
Q 040195 304 STMTHFYIGGNQILGIIHFGIRNLVNLIALGMQSNQLHGTIPDVIGELKNLQILSLFGNFLHGSIPSSLGNLTKLANLEL 383 (472)
Q Consensus 304 ~~l~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l 383 (472)
++++.|+++++.++...+..+..+++|++|++++|.+.+..+..|..+++|++|++++|.+.+..+..+..+++|++|++
T Consensus 28 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 107 (208)
T 2o6s_A 28 AQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELAL 107 (208)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEEc
Confidence 48999999999999888778899999999999999999777777889999999999999999776777889999999999
Q ss_pred cCCcccccCCcCccCCCCCceEeecCCcccccCChhhhhhcccceEEEcCCCcccccccccccCCCCCceEeccCCeecc
Q 040195 384 SSNSLQGNIPLSVGNCQNLIGFDASHITLTGALPQQLLSITTLSLYLDLSHNLLNGSLLLQVGNLKNLILLDISGNQFSG 463 (472)
Q Consensus 384 ~~~~~~~~~~~~~~~~~~L~~L~ls~~~~~~~~~~~l~~~~~l~~~L~ls~n~l~~~~~~~l~~~~~L~~L~L~~n~~~~ 463 (472)
++|.+++..+..+..+++|+.|++++|.+++..+..+..+++++ .|++++|.+.+ .+++|+.|+++.|.+++
T Consensus 108 ~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~-~L~l~~N~~~~-------~~~~l~~L~~~~n~~~g 179 (208)
T 2o6s_A 108 NTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQ-YIWLHDNPWDC-------TCPGIRYLSEWINKHSG 179 (208)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCC-EEECCSCCBCC-------CTTTTHHHHHHHHHCTT
T ss_pred CCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCcc-EEEecCCCeec-------CCCCHHHHHHHHHhCCc
Confidence 99999966666788999999999999999854455578899999 99999998763 45689999999999999
Q ss_pred ccCCccccC
Q 040195 464 VIPVTLSIC 472 (472)
Q Consensus 464 ~~p~~~~~~ 472 (472)
.+|..++++
T Consensus 180 ~ip~~~~~l 188 (208)
T 2o6s_A 180 VVRNSAGSV 188 (208)
T ss_dssp TBBCTTSSB
T ss_pred eeeccCccc
Confidence 999887753
No 96
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.78 E-value=2.6e-18 Score=149.51 Aligned_cols=164 Identities=20% Similarity=0.251 Sum_probs=133.7
Q ss_pred CCCccEEeccCCcCccCcchhhhcCCCCCEEEccCcccCCCCCcccCCCCCCcEEEcccCcCcccCCccccCCCCCcEEE
Q 040195 61 LSFLRYINLSDNGFHGEIPQEIGNLYRLEKLELSNNSFSGTIPTNLSRCSELTHLRVANNKLEGQIPKEIGSLLKLQTLA 140 (472)
Q Consensus 61 ~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~ 140 (472)
.++|++|++++|.+....+..+..+++|++|++++|.+....+..|..+++|++|++++|.++...+..+..+++|++|+
T Consensus 27 ~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 106 (208)
T 2o6s_A 27 PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELA 106 (208)
T ss_dssp CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEE
Confidence 45889999999988877777788899999999999988866666678899999999999998866556678889999999
Q ss_pred ccccCCCCCCCccccCCCCccEEEecCCccccccccccccCCCccEEEccCCccccccccccccChhhhcCCCCccEEEc
Q 040195 141 LYYNNLTGQLPDFVGNLSALQVIYIRGNSLGGKIPTTLGLLRNLVYLNVNENQFWYVSSFSGSLPFDILVNLPNLKKLCI 220 (472)
Q Consensus 141 l~~~~i~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~L~~L~l 220 (472)
+++|.+.+..+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+ ...+++|+.|++
T Consensus 107 L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~--------------~~~~~~l~~L~~ 172 (208)
T 2o6s_A 107 LNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPW--------------DCTCPGIRYLSE 172 (208)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCB--------------CCCTTTTHHHHH
T ss_pred cCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCe--------------ecCCCCHHHHHH
Confidence 999998866666678889999999999988866556678889999999998864 124678888888
Q ss_pred ccccccccCCccCcCCCC
Q 040195 221 AENNFVGSIPDSLSNASN 238 (472)
Q Consensus 221 ~~~~l~~~~~~~l~~~~~ 238 (472)
..+.+++.+|..++.++.
T Consensus 173 ~~n~~~g~ip~~~~~l~~ 190 (208)
T 2o6s_A 173 WINKHSGVVRNSAGSVAP 190 (208)
T ss_dssp HHHHCTTTBBCTTSSBCT
T ss_pred HHHhCCceeeccCccccC
Confidence 888888888777766554
No 97
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.76 E-value=1.1e-17 Score=157.82 Aligned_cols=241 Identities=18% Similarity=0.184 Sum_probs=138.6
Q ss_pred EEEccccCCCCCCCccccCCCCccEEEecCCccccccccccccCCCccEEEccCCccccccccccccChhhhcCCCCccE
Q 040195 138 TLALYYNNLTGQLPDFVGNLSALQVIYIRGNSLGGKIPTTLGLLRNLVYLNVNENQFWYVSSFSGSLPFDILVNLPNLKK 217 (472)
Q Consensus 138 ~L~l~~~~i~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~L~~ 217 (472)
+++.++++++ .+|..+ .+++++|++++|+++...+..|..+++|++|++++|.+. +.++...+..++++.+
T Consensus 13 ~v~C~~~~Lt-~iP~~l--~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~------~~i~~~~f~~L~~l~~ 83 (350)
T 4ay9_X 13 VFLCQESKVT-EIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVL------EVIEADVFSNLPKLHE 83 (350)
T ss_dssp EEEEESTTCC-SCCTTC--CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTC------CEECTTSBCSCTTCCE
T ss_pred EEEecCCCCC-ccCcCc--CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCC------CccChhHhhcchhhhh
Confidence 3444444444 333332 134555555555555333334555555555555555431 2233334445555444
Q ss_pred -EEcccccccccCCccCcCCCCCCEEecCCCcccccccccccccCCCCeEEcCCC-cCCCCCCCCcchhhhhcccCCCcC
Q 040195 218 -LCIAENNFVGSIPDSLSNASNLELLELAGNQFEGKVSIDFSSLKNLAVLNLERN-NLGIGTANDLGFVTFLTNCSSLKL 295 (472)
Q Consensus 218 -L~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~-~~~~~~~~~~~~~~~~~~~~~l~~ 295 (472)
+.+.+|.++...+..|..+++|++|++++|.+.......+....++..+++.++ .+......
T Consensus 84 ~l~~~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~---------------- 147 (350)
T 4ay9_X 84 IRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERN---------------- 147 (350)
T ss_dssp EEEEEETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTT----------------
T ss_pred hhcccCCcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhcccccccccccc----------------
Confidence 334445565555566666677777777766666544444445555666666442 33211100
Q ss_pred CchhhhccccccEEEeecccccCcccccccCccCcceEeccc-cccccCcchhhcCCCCCcEEEccCCcCccccccchhc
Q 040195 296 PHSIANLSSTMTHFYIGGNQILGIIHFGIRNLVNLIALGMQS-NQLHGTIPDVIGELKNLQILSLFGNFLHGSIPSSLGN 374 (472)
Q Consensus 296 ~~~~~~~~~~l~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~-~~i~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~ 374 (472)
.+......++.|++++|.++.+....+ ..++|+++++++ |.+....+.+|..+++|++|++++|+++..-+..
T Consensus 148 --~f~~~~~~l~~L~L~~N~i~~i~~~~f-~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~~~--- 221 (350)
T 4ay9_X 148 --SFVGLSFESVILWLNKNGIQEIHNSAF-NGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYG--- 221 (350)
T ss_dssp --SSTTSBSSCEEEECCSSCCCEECTTSS-TTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCSSS---
T ss_pred --chhhcchhhhhhccccccccCCChhhc-cccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccChhh---
Confidence 111122356778888888776655444 456789999975 5666555567888999999999999988443333
Q ss_pred ccccCeeeccCCcccccCCcCccCCCCCceEeecCC
Q 040195 375 LTKLANLELSSNSLQGNIPLSVGNCQNLIGFDASHI 410 (472)
Q Consensus 375 ~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ls~~ 410 (472)
+.+|+.|.+.++.-...+| .+..+++|+.+++.++
T Consensus 222 ~~~L~~L~~l~~~~l~~lP-~l~~l~~L~~l~l~~~ 256 (350)
T 4ay9_X 222 LENLKKLRARSTYNLKKLP-TLEKLVALMEASLTYP 256 (350)
T ss_dssp CTTCCEEECTTCTTCCCCC-CTTTCCSCCEEECSCH
T ss_pred hccchHhhhccCCCcCcCC-CchhCcChhhCcCCCC
Confidence 4556666665554444566 4778889999998764
No 98
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.76 E-value=4.7e-18 Score=160.24 Aligned_cols=221 Identities=17% Similarity=0.114 Sum_probs=113.0
Q ss_pred CceEEEECCCCccCcccCccccCCCCccEEeccCCcCccC-cchhhhcCCCCCE-EEccCcccCCCCCcccCCCCCCcEE
Q 040195 38 QRVTELDLSNQRIGGVLSPYVGNLSFLRYINLSDNGFHGE-IPQEIGNLYRLEK-LELSNNSFSGTIPTNLSRCSELTHL 115 (472)
Q Consensus 38 ~~l~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~-~~~~~~~l~~L~~-L~L~~~~~~~~~~~~l~~l~~L~~L 115 (472)
+++++|++++|.++.+....|.++++|++|+|++|.+.+. .+++|.+++++++ +.+.+|.+....+..|..+++|++|
T Consensus 30 ~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~~L 109 (350)
T 4ay9_X 30 RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYL 109 (350)
T ss_dssp TTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECTTSBCCCTTCCEE
T ss_pred CCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCchhhhhccccccc
Confidence 4556666666666655555566666666666666655332 2344556665554 3334455554445556666666666
Q ss_pred EcccCcCcccCCccccCCCCCcEEEccc-cCCCCCCCccccCC-CCccEEEecCCccccccccccccCCCccEEEccC-C
Q 040195 116 RVANNKLEGQIPKEIGSLLKLQTLALYY-NNLTGQLPDFVGNL-SALQVIYIRGNSLGGKIPTTLGLLRNLVYLNVNE-N 192 (472)
Q Consensus 116 ~l~~~~~~~~~~~~l~~l~~L~~L~l~~-~~i~~~~~~~l~~~-~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~-~ 192 (472)
++++|.+....+..+....++..+++.+ +.+....+..+..+ ..++.|++++|.++. ++.......+|+++++.+ |
T Consensus 110 ~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~-i~~~~f~~~~L~~l~l~~~n 188 (350)
T 4ay9_X 110 LISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQE-IHNSAFNGTQLDELNLSDNN 188 (350)
T ss_dssp EEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCE-ECTTSSTTEEEEEEECTTCT
T ss_pred cccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccccC-CChhhccccchhHHhhccCC
Confidence 6666666543333444455555565543 33443333334443 245566666666653 233223344566666653 3
Q ss_pred ccccccccccccChhhhcCCCCccEEEcccccccccCCccCcCCCCCCEEecCCCcccccccccccccCCCCeEEcCC
Q 040195 193 QFWYVSSFSGSLPFDILVNLPNLKKLCIAENNFVGSIPDSLSNASNLELLELAGNQFEGKVSIDFSSLKNLAVLNLER 270 (472)
Q Consensus 193 ~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~ 270 (472)
.+ +.++.+.+..+++|+.|++++|.++...+..| .+|+.|.+.++.--...+ .+..+++|+.+++.+
T Consensus 189 ~l-------~~i~~~~f~~l~~L~~LdLs~N~l~~lp~~~~---~~L~~L~~l~~~~l~~lP-~l~~l~~L~~l~l~~ 255 (350)
T 4ay9_X 189 NL-------EELPNDVFHGASGPVILDISRTRIHSLPSYGL---ENLKKLRARSTYNLKKLP-TLEKLVALMEASLTY 255 (350)
T ss_dssp TC-------CCCCTTTTTTEECCSEEECTTSCCCCCCSSSC---TTCCEEECTTCTTCCCCC-CTTTCCSCCEEECSC
T ss_pred cc-------cCCCHHHhccCcccchhhcCCCCcCccChhhh---ccchHhhhccCCCcCcCC-CchhCcChhhCcCCC
Confidence 33 44444555566666666666666654333333 334444433332111222 345556666666543
No 99
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.75 E-value=2.3e-17 Score=145.52 Aligned_cols=165 Identities=21% Similarity=0.216 Sum_probs=124.3
Q ss_pred CCCCCCCCCCcccccceeeCCCCCceEEEECCCCccCcccCccccCCCCccEEeccCCcCccCcchhhhcCCCCCEEEcc
Q 040195 15 VTSSWNNTINLCQWMGVTCGHRHQRVTELDLSNQRIGGVLSPYVGNLSFLRYINLSDNGFHGEIPQEIGNLYRLEKLELS 94 (472)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~ 94 (472)
....|..+...|.|.++.|.. +.+..... .+ .++|++|++++|.+....+..+..+++|++|+++
T Consensus 8 ~~~~~~~~~~~Cs~~~v~c~~------------~~l~~ip~-~~--~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~ 72 (229)
T 3e6j_A 8 HHSAACPSQCSCSGTTVDCRS------------KRHASVPA-GI--PTNAQILYLHDNQITKLEPGVFDSLINLKELYLG 72 (229)
T ss_dssp ---CCCCTTCEEETTEEECTT------------SCCSSCCS-CC--CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred hhhccCCCCCEEeCCEeEccC------------CCcCccCC-CC--CCCCCEEEcCCCccCccCHHHhhCccCCcEEECC
Confidence 334555677999998888742 33333322 11 2778888888888887777788888888888888
Q ss_pred CcccCCCCCcccCCCCCCcEEEcccCcCcccCCccccCCCCCcEEEccccCCCCCCCccccCCCCccEEEecCCcccccc
Q 040195 95 NNSFSGTIPTNLSRCSELTHLRVANNKLEGQIPKEIGSLLKLQTLALYYNNLTGQLPDFVGNLSALQVIYIRGNSLGGKI 174 (472)
Q Consensus 95 ~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~i~~~~~~~l~~~~~L~~L~l~~~~~~~~~ 174 (472)
+|.+....+..|..+++|++|++++|.++...+..+..+++|++|++++|.+. .+|..+..+++|++|++++|.++...
T Consensus 73 ~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~ 151 (229)
T 3e6j_A 73 SNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIP 151 (229)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCC
T ss_pred CCCCCCcChhhcccCCCcCEEECCCCcCCccChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEECCCCcCCccC
Confidence 88887555566788888888888888888665666788888888888888887 67777788888888888888887655
Q ss_pred ccccccCCCccEEEccCCccc
Q 040195 175 PTTLGLLRNLVYLNVNENQFW 195 (472)
Q Consensus 175 ~~~l~~~~~L~~L~l~~~~l~ 195 (472)
+..+..+++|+.|++++|++.
T Consensus 152 ~~~~~~l~~L~~L~l~~N~~~ 172 (229)
T 3e6j_A 152 HGAFDRLSSLTHAYLFGNPWD 172 (229)
T ss_dssp TTTTTTCTTCCEEECTTSCBC
T ss_pred HHHHhCCCCCCEEEeeCCCcc
Confidence 566788888888888888764
No 100
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.75 E-value=7.9e-18 Score=167.01 Aligned_cols=188 Identities=24% Similarity=0.358 Sum_probs=139.7
Q ss_pred CCccEEEcccccccccCCccCcCCCCCCEEecCCCcccccccccccccCCCCeEEcCCCcCCCCCCCCcchhhhhcccCC
Q 040195 213 PNLKKLCIAENNFVGSIPDSLSNASNLELLELAGNQFEGKVSIDFSSLKNLAVLNLERNNLGIGTANDLGFVTFLTNCSS 292 (472)
Q Consensus 213 ~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~ 292 (472)
.+++.|++++|.+++ +|..+ .++|++|++++|.++. .+ ..+++|++|++++|.++.
T Consensus 59 ~~L~~L~Ls~n~L~~-lp~~l--~~~L~~L~Ls~N~l~~-ip---~~l~~L~~L~Ls~N~l~~----------------- 114 (571)
T 3cvr_A 59 NQFSELQLNRLNLSS-LPDNL--PPQITVLEITQNALIS-LP---ELPASLEYLDACDNRLST----------------- 114 (571)
T ss_dssp TTCSEEECCSSCCSC-CCSCC--CTTCSEEECCSSCCSC-CC---CCCTTCCEEECCSSCCSC-----------------
T ss_pred CCccEEEeCCCCCCc-cCHhH--cCCCCEEECcCCCCcc-cc---cccCCCCEEEccCCCCCC-----------------
Confidence 389999999999886 55544 3789999999999883 33 457899999999998762
Q ss_pred CcCCchhhhccccccEEEeecccccCcccccccCccCcceEeccccccccCcchhhcCCCCCcEEEccCCcCccccccch
Q 040195 293 LKLPHSIANLSSTMTHFYIGGNQILGIIHFGIRNLVNLIALGMQSNQLHGTIPDVIGELKNLQILSLFGNFLHGSIPSSL 372 (472)
Q Consensus 293 l~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l 372 (472)
+|. +. .+|+.|++++|.++.+.. .+++|+.|++++|.+.+ +|. .+++|++|++++|.+++ +|. +
T Consensus 115 --ip~-l~---~~L~~L~Ls~N~l~~lp~----~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~L~~-lp~-l 178 (571)
T 3cvr_A 115 --LPE-LP---ASLKHLDVDNNQLTMLPE----LPALLEYINADNNQLTM-LPE---LPTSLEVLSVRNNQLTF-LPE-L 178 (571)
T ss_dssp --CCC-CC---TTCCEEECCSSCCSCCCC----CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC-C
T ss_pred --cch-hh---cCCCEEECCCCcCCCCCC----cCccccEEeCCCCccCc-CCC---cCCCcCEEECCCCCCCC-cch-h
Confidence 222 11 178888888888887433 56888888888888875 443 46788888888888875 555 5
Q ss_pred hcccccCeeeccCCcccccCCcCccCCCCC-------ceEeecCCcccccCChhhhhhcccceEEEcCCCcccccccccc
Q 040195 373 GNLTKLANLELSSNSLQGNIPLSVGNCQNL-------IGFDASHITLTGALPQQLLSITTLSLYLDLSHNLLNGSLLLQV 445 (472)
Q Consensus 373 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L-------~~L~ls~~~~~~~~~~~l~~~~~l~~~L~ls~n~l~~~~~~~l 445 (472)
. ++|+.|++++|.++ .+|. +.. +| +.|++++|.++ .+|..+..+++++ .|++++|++++..|..+
T Consensus 179 ~--~~L~~L~Ls~N~L~-~lp~-~~~--~L~~~~~~L~~L~Ls~N~l~-~lp~~l~~l~~L~-~L~L~~N~l~~~~p~~l 250 (571)
T 3cvr_A 179 P--ESLEALDVSTNLLE-SLPA-VPV--RNHHSEETEIFFRCRENRIT-HIPENILSLDPTC-TIILEDNPLSSRIRESL 250 (571)
T ss_dssp C--TTCCEEECCSSCCS-SCCC-CC----------CCEEEECCSSCCC-CCCGGGGGSCTTE-EEECCSSSCCHHHHHHH
T ss_pred h--CCCCEEECcCCCCC-chhh-HHH--hhhcccccceEEecCCCcce-ecCHHHhcCCCCC-EEEeeCCcCCCcCHHHH
Confidence 4 78888888888888 5655 433 66 88888888888 6787777788888 88888888887777666
Q ss_pred cCC
Q 040195 446 GNL 448 (472)
Q Consensus 446 ~~~ 448 (472)
..+
T Consensus 251 ~~l 253 (571)
T 3cvr_A 251 SQQ 253 (571)
T ss_dssp HHH
T ss_pred HHh
Confidence 654
No 101
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.75 E-value=1.4e-17 Score=145.92 Aligned_cols=152 Identities=15% Similarity=0.154 Sum_probs=116.8
Q ss_pred cEEEeecccccCcccccccCccCcceEeccccccccCcchhhcCCCCCcEEEccCCcCccccccchhcccccCeeeccCC
Q 040195 307 THFYIGGNQILGIIHFGIRNLVNLIALGMQSNQLHGTIPDVIGELKNLQILSLFGNFLHGSIPSSLGNLTKLANLELSSN 386 (472)
Q Consensus 307 ~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~~ 386 (472)
+.++++++.++.+.. .+. ++|+.|++++|.+....+..|..+++|++|++++|.+.+..+..|..+++|++|++++|
T Consensus 14 ~~v~c~~~~l~~iP~-~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N 90 (220)
T 2v9t_B 14 NIVDCRGKGLTEIPT-NLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGN 90 (220)
T ss_dssp TEEECTTSCCSSCCS-SCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSS
T ss_pred CEEEcCCCCcCcCCC-ccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCC
Confidence 566777777665533 222 67888888888888666667778888888888888888777778888888888888888
Q ss_pred cccccCCcCccCCCCCceEeecCCcccccCChhhhhhcccceEEEcCCCcccccccccccCCCCCceEeccCCeec
Q 040195 387 SLQGNIPLSVGNCQNLIGFDASHITLTGALPQQLLSITTLSLYLDLSHNLLNGSLLLQVGNLKNLILLDISGNQFS 462 (472)
Q Consensus 387 ~~~~~~~~~~~~~~~L~~L~ls~~~~~~~~~~~l~~~~~l~~~L~ls~n~l~~~~~~~l~~~~~L~~L~L~~n~~~ 462 (472)
.++...+..+..+++|++|++++|.+.+..+..+..+++|+ .|++++|++++..+..|..+++|+.|+|++|++.
T Consensus 91 ~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~-~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 165 (220)
T 2v9t_B 91 KITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLN-LLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFI 165 (220)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCC-EEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEE
T ss_pred cCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCC-EEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcC
Confidence 88854445567788888888888888865567777888888 8888888888776777888888888888888774
No 102
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.74 E-value=2.7e-17 Score=145.08 Aligned_cols=155 Identities=24% Similarity=0.177 Sum_probs=128.5
Q ss_pred cccEEEeecccccCcccccccCccCcceEeccccccccCcchhhcCCCCCcEEEccCCcCccccccchhcccccCeeecc
Q 040195 305 TMTHFYIGGNQILGIIHFGIRNLVNLIALGMQSNQLHGTIPDVIGELKNLQILSLFGNFLHGSIPSSLGNLTKLANLELS 384 (472)
Q Consensus 305 ~l~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~ 384 (472)
..+.++++++.++.+... + .++|+.|++++|.+.+..+..|..+++|++|++++|.+....+..|..+++|++|+++
T Consensus 20 s~~~v~c~~~~l~~ip~~-~--~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls 96 (229)
T 3e6j_A 20 SGTTVDCRSKRHASVPAG-I--PTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLG 96 (229)
T ss_dssp ETTEEECTTSCCSSCCSC-C--CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred eCCEeEccCCCcCccCCC-C--CCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECC
Confidence 466788887777765432 2 3789999999999988778888889999999999999876666677889999999999
Q ss_pred CCcccccCCcCccCCCCCceEeecCCcccccCChhhhhhcccceEEEcCCCcccccccccccCCCCCceEeccCCeeccc
Q 040195 385 SNSLQGNIPLSVGNCQNLIGFDASHITLTGALPQQLLSITTLSLYLDLSHNLLNGSLLLQVGNLKNLILLDISGNQFSGV 464 (472)
Q Consensus 385 ~~~~~~~~~~~~~~~~~L~~L~ls~~~~~~~~~~~l~~~~~l~~~L~ls~n~l~~~~~~~l~~~~~L~~L~L~~n~~~~~ 464 (472)
+|.++...+..+..+++|+.|++++|.+. .+|..+..+++|+ .|++++|++++..+..|..+++|+.|++++|++...
T Consensus 97 ~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~-~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~ 174 (229)
T 3e6j_A 97 TNQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLT-HLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDCE 174 (229)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCS-EEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCTT
T ss_pred CCcCCccChhHhCcchhhCeEeccCCccc-ccCcccccCCCCC-EEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccCC
Confidence 99988666666788999999999999998 7888888889998 999999999877667788899999999999988643
No 103
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.73 E-value=2e-17 Score=151.51 Aligned_cols=171 Identities=25% Similarity=0.348 Sum_probs=95.0
Q ss_pred cCCCCccEEeccCCcCccCcchhhhcCCCCCEEEccCcccCCCCCcccCCCCCCcEEEcccCcCcccCCccccCCCCCcE
Q 040195 59 GNLSFLRYINLSDNGFHGEIPQEIGNLYRLEKLELSNNSFSGTIPTNLSRCSELTHLRVANNKLEGQIPKEIGSLLKLQT 138 (472)
Q Consensus 59 ~~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~ 138 (472)
..+++|++|++++|.+... ..+..+++|++|++++|.+.+..+ +..+++|++|++++|.++. . ..+..+++|++
T Consensus 43 ~~l~~L~~L~l~~~~i~~~--~~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~-~-~~l~~l~~L~~ 116 (291)
T 1h6t_A 43 NELNSIDQIIANNSDIKSV--QGIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKD-L-SSLKDLKKLKS 116 (291)
T ss_dssp HHHHTCCEEECTTSCCCCC--TTGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC-G-GGGTTCTTCCE
T ss_pred hhcCcccEEEccCCCcccC--hhHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCCC-C-hhhccCCCCCE
Confidence 3455666666666655533 235556666666666666653322 5566666666666666552 2 23556666666
Q ss_pred EEccccCCCCCCCccccCCCCccEEEecCCccccccccccccCCCccEEEccCCccccccccccccChhhhcCCCCccEE
Q 040195 139 LALYYNNLTGQLPDFVGNLSALQVIYIRGNSLGGKIPTTLGLLRNLVYLNVNENQFWYVSSFSGSLPFDILVNLPNLKKL 218 (472)
Q Consensus 139 L~l~~~~i~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~L~~L 218 (472)
|++++|.+.+. ..+..+++|++|++++|.+++. ..+..+++|++|++++|.+.++. . +..+++|+.|
T Consensus 117 L~L~~n~i~~~--~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~-------~--l~~l~~L~~L 183 (291)
T 1h6t_A 117 LSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIV-------P--LAGLTKLQNL 183 (291)
T ss_dssp EECTTSCCCCC--GGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCG-------G--GTTCTTCCEE
T ss_pred EECCCCcCCCC--hhhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccch-------h--hcCCCccCEE
Confidence 66666666532 3455566666666666665532 44555666666666666553321 1 3355556666
Q ss_pred EcccccccccCCccCcCCCCCCEEecCCCccc
Q 040195 219 CIAENNFVGSIPDSLSNASNLELLELAGNQFE 250 (472)
Q Consensus 219 ~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~ 250 (472)
++++|.+++. + .+..+++|+.|++++|.+.
T Consensus 184 ~L~~N~i~~l-~-~l~~l~~L~~L~l~~n~i~ 213 (291)
T 1h6t_A 184 YLSKNHISDL-R-ALAGLKNLDVLELFSQECL 213 (291)
T ss_dssp ECCSSCCCBC-G-GGTTCTTCSEEEEEEEEEE
T ss_pred ECCCCcCCCC-h-hhccCCCCCEEECcCCccc
Confidence 6666655532 2 2555566666666665554
No 104
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.73 E-value=2.3e-17 Score=144.57 Aligned_cols=154 Identities=14% Similarity=0.136 Sum_probs=124.7
Q ss_pred ccEEEeecccccCcccccccCccCcceEeccccccccCcc-hhhcCCCCCcEEEccCCcCccccccchhcccccCeeecc
Q 040195 306 MTHFYIGGNQILGIIHFGIRNLVNLIALGMQSNQLHGTIP-DVIGELKNLQILSLFGNFLHGSIPSSLGNLTKLANLELS 384 (472)
Q Consensus 306 l~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~-~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~ 384 (472)
.+.++++++.++.+.. .+ .+.+++|++++|.+.+..+ ..|..+++|++|++++|.+++..+..|..+++|++|+++
T Consensus 13 ~~~l~~s~n~l~~iP~-~~--~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls 89 (220)
T 2v70_A 13 GTTVDCSNQKLNKIPE-HI--PQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLT 89 (220)
T ss_dssp TTEEECCSSCCSSCCS-CC--CTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred CCEeEeCCCCcccCcc-CC--CCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECC
Confidence 4578888888776533 23 2457889999998886644 457888899999999998887777788888999999999
Q ss_pred CCcccccCCcCccCCCCCceEeecCCcccccCChhhhhhcccceEEEcCCCcccccccccccCCCCCceEeccCCeecc
Q 040195 385 SNSLQGNIPLSVGNCQNLIGFDASHITLTGALPQQLLSITTLSLYLDLSHNLLNGSLLLQVGNLKNLILLDISGNQFSG 463 (472)
Q Consensus 385 ~~~~~~~~~~~~~~~~~L~~L~ls~~~~~~~~~~~l~~~~~l~~~L~ls~n~l~~~~~~~l~~~~~L~~L~L~~n~~~~ 463 (472)
+|.+++..+..+..+++|++|++++|.+.+..+..+..+++|+ .|++++|++++..|..|..+++|+.|+|++|++..
T Consensus 90 ~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~-~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c 167 (220)
T 2v70_A 90 SNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVR-LLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNC 167 (220)
T ss_dssp SSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCS-EEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEEC
T ss_pred CCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCC-EEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcC
Confidence 9998866666788889999999999998866677888888888 89999999988778888888999999999998863
No 105
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.73 E-value=2.4e-17 Score=163.56 Aligned_cols=216 Identities=22% Similarity=0.296 Sum_probs=164.2
Q ss_pred CCCCCCCCCCcc-----cccce-eeCCCCCceEEEECCCCccCcccCccccCCCCccEEeccCCcCccCcchhhhcCCCC
Q 040195 15 VTSSWNNTINLC-----QWMGV-TCGHRHQRVTELDLSNQRIGGVLSPYVGNLSFLRYINLSDNGFHGEIPQEIGNLYRL 88 (472)
Q Consensus 15 ~~~~~~~~~~~~-----~~~~~-~~~~~~~~l~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~l~~L 88 (472)
.+..|......| .|.++ .|.. .+++.|+++++.+.+. +..+ +++|++|++++|.+. .+| ..+++|
T Consensus 32 ~l~~W~~~~~~~~~~~~~~~~l~~C~~--~~L~~L~Ls~n~L~~l-p~~l--~~~L~~L~Ls~N~l~-~ip---~~l~~L 102 (571)
T 3cvr_A 32 AWDKWEKQALPGENRNEAVSLLKECLI--NQFSELQLNRLNLSSL-PDNL--PPQITVLEITQNALI-SLP---ELPASL 102 (571)
T ss_dssp HHHHHHTTCCTTCCHHHHHHHHHHHHH--TTCSEEECCSSCCSCC-CSCC--CTTCSEEECCSSCCS-CCC---CCCTTC
T ss_pred HHHHHhccCCccccccchhhhcccccc--CCccEEEeCCCCCCcc-CHhH--cCCCCEEECcCCCCc-ccc---cccCCC
Confidence 345687677777 67777 5632 5899999999999874 3333 378999999999988 455 457899
Q ss_pred CEEEccCcccCCCCCcccCCCCCCcEEEcccCcCcccCCccccCCCCCcEEEccccCCCCCCCccccCCCCccEEEecCC
Q 040195 89 EKLELSNNSFSGTIPTNLSRCSELTHLRVANNKLEGQIPKEIGSLLKLQTLALYYNNLTGQLPDFVGNLSALQVIYIRGN 168 (472)
Q Consensus 89 ~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~i~~~~~~~l~~~~~L~~L~l~~~ 168 (472)
++|++++|.+.+ +|. +.. +|++|++++|.+++ +|. .+++|+.|++++|.+++ +|. .+++|++|++++|
T Consensus 103 ~~L~Ls~N~l~~-ip~-l~~--~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N 170 (571)
T 3cvr_A 103 EYLDACDNRLST-LPE-LPA--SLKHLDVDNNQLTM-LPE---LPALLEYINADNNQLTM-LPE---LPTSLEVLSVRNN 170 (571)
T ss_dssp CEEECCSSCCSC-CCC-CCT--TCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSS
T ss_pred CEEEccCCCCCC-cch-hhc--CCCEEECCCCcCCC-CCC---cCccccEEeCCCCccCc-CCC---cCCCcCEEECCCC
Confidence 999999999985 666 655 99999999999985 555 67999999999999985 554 5789999999999
Q ss_pred ccccccccccccCCCccEEEccCCccccccccccccChhhhcCCCCccEEEcccccccccCCccCcCCCCCCEEecCCCc
Q 040195 169 SLGGKIPTTLGLLRNLVYLNVNENQFWYVSSFSGSLPFDILVNLPNLKKLCIAENNFVGSIPDSLSNASNLELLELAGNQ 248 (472)
Q Consensus 169 ~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~ 248 (472)
.+++ ++. +. ++|++|++++|.+..++. ++.......+.|+.|++++|.++. +|..+..+++|+.|++++|.
T Consensus 171 ~L~~-lp~-l~--~~L~~L~Ls~N~L~~lp~----~~~~L~~~~~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~L~~N~ 241 (571)
T 3cvr_A 171 QLTF-LPE-LP--ESLEALDVSTNLLESLPA----VPVRNHHSEETEIFFRCRENRITH-IPENILSLDPTCTIILEDNP 241 (571)
T ss_dssp CCSC-CCC-CC--TTCCEEECCSSCCSSCCC----CC--------CCEEEECCSSCCCC-CCGGGGGSCTTEEEECCSSS
T ss_pred CCCC-cch-hh--CCCCEEECcCCCCCchhh----HHHhhhcccccceEEecCCCccee-cCHHHhcCCCCCEEEeeCCc
Confidence 9985 555 55 899999999999865432 111111222334999999999984 66667779999999999999
Q ss_pred cccccccccccc
Q 040195 249 FEGKVSIDFSSL 260 (472)
Q Consensus 249 ~~~~~~~~l~~l 260 (472)
+++..+..+..+
T Consensus 242 l~~~~p~~l~~l 253 (571)
T 3cvr_A 242 LSSRIRESLSQQ 253 (571)
T ss_dssp CCHHHHHHHHHH
T ss_pred CCCcCHHHHHHh
Confidence 987766666554
No 106
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.73 E-value=2e-17 Score=156.55 Aligned_cols=157 Identities=22% Similarity=0.172 Sum_probs=139.4
Q ss_pred ccccEEEeecccccCccccccc-CccCcceEeccccccccCcchhhcCCCCCcEEEccCCcCccccccchhcccccCeee
Q 040195 304 STMTHFYIGGNQILGIIHFGIR-NLVNLIALGMQSNQLHGTIPDVIGELKNLQILSLFGNFLHGSIPSSLGNLTKLANLE 382 (472)
Q Consensus 304 ~~l~~l~l~~~~~~~~~~~~l~-~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~ 382 (472)
+.++.|++++|.++......+. .+++|+.|+|++|.+.+..+..|..+++|++|+|++|.+....+..|..+++|++|+
T Consensus 39 ~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 118 (361)
T 2xot_A 39 SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLL 118 (361)
T ss_dssp TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEE
T ss_pred CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCCcCCcCCHHHhCCCcCCCEEE
Confidence 4689999999999988888887 899999999999999988778899999999999999999977777899999999999
Q ss_pred ccCCcccccCCcCccCCCCCceEeecCCcccccCChhh----hhhcccceEEEcCCCcccccccccccCCCC--CceEec
Q 040195 383 LSSNSLQGNIPLSVGNCQNLIGFDASHITLTGALPQQL----LSITTLSLYLDLSHNLLNGSLLLQVGNLKN--LILLDI 456 (472)
Q Consensus 383 l~~~~~~~~~~~~~~~~~~L~~L~ls~~~~~~~~~~~l----~~~~~l~~~L~ls~n~l~~~~~~~l~~~~~--L~~L~L 456 (472)
+++|+++...+..+..+++|+.|++++|.++ .+|..+ ..+++|+ .|+|++|+++...+..+..++. ++.|+|
T Consensus 119 L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~~~~l~~L~-~L~L~~N~l~~l~~~~~~~l~~~~l~~l~l 196 (361)
T 2xot_A 119 LYNNHIVVVDRNAFEDMAQLQKLYLSQNQIS-RFPVELIKDGNKLPKLM-LLDLSSNKLKKLPLTDLQKLPAWVKNGLYL 196 (361)
T ss_dssp CCSSCCCEECTTTTTTCTTCCEEECCSSCCC-SCCGGGTC----CTTCC-EEECCSSCCCCCCHHHHHHSCHHHHTTEEC
T ss_pred CCCCcccEECHHHhCCcccCCEEECCCCcCC-eeCHHHhcCcccCCcCC-EEECCCCCCCccCHHHhhhccHhhcceEEe
Confidence 9999999777889999999999999999999 466554 5688999 9999999999777778888887 489999
Q ss_pred cCCeec
Q 040195 457 SGNQFS 462 (472)
Q Consensus 457 ~~n~~~ 462 (472)
++|++.
T Consensus 197 ~~N~~~ 202 (361)
T 2xot_A 197 HNNPLE 202 (361)
T ss_dssp CSSCEE
T ss_pred cCCCcc
Confidence 999985
No 107
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.73 E-value=4.1e-17 Score=149.47 Aligned_cols=171 Identities=22% Similarity=0.289 Sum_probs=147.5
Q ss_pred CCCceEEEECCCCccCcccCccccCCCCccEEeccCCcCccCcchhhhcCCCCCEEEccCcccCCCCCcccCCCCCCcEE
Q 040195 36 RHQRVTELDLSNQRIGGVLSPYVGNLSFLRYINLSDNGFHGEIPQEIGNLYRLEKLELSNNSFSGTIPTNLSRCSELTHL 115 (472)
Q Consensus 36 ~~~~l~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L 115 (472)
..++++.|+++++.+... ..+..+++|++|++++|.+.+..+ +..+++|++|++++|.+.+ . ..+..+++|++|
T Consensus 44 ~l~~L~~L~l~~~~i~~~--~~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~-~-~~l~~l~~L~~L 117 (291)
T 1h6t_A 44 ELNSIDQIIANNSDIKSV--QGIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKD-L-SSLKDLKKLKSL 117 (291)
T ss_dssp HHHTCCEEECTTSCCCCC--TTGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC-G-GGGTTCTTCCEE
T ss_pred hcCcccEEEccCCCcccC--hhHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCCC-C-hhhccCCCCCEE
Confidence 347899999999998776 358899999999999999986544 8999999999999999874 3 348999999999
Q ss_pred EcccCcCcccCCccccCCCCCcEEEccccCCCCCCCccccCCCCccEEEecCCccccccccccccCCCccEEEccCCccc
Q 040195 116 RVANNKLEGQIPKEIGSLLKLQTLALYYNNLTGQLPDFVGNLSALQVIYIRGNSLGGKIPTTLGLLRNLVYLNVNENQFW 195 (472)
Q Consensus 116 ~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~i~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~ 195 (472)
++++|.+... ..+..+++|++|++++|.+.+. ..+..+++|++|++++|.+++..+ +..+++|++|++++|.+.
T Consensus 118 ~L~~n~i~~~--~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N~i~ 191 (291)
T 1h6t_A 118 SLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHIS 191 (291)
T ss_dssp ECTTSCCCCC--GGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCC
T ss_pred ECCCCcCCCC--hhhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccchh--hcCCCccCEEECCCCcCC
Confidence 9999999843 5688999999999999999854 678899999999999999985443 889999999999999985
Q ss_pred cccccccccChhhhcCCCCccEEEcccccccc
Q 040195 196 YVSSFSGSLPFDILVNLPNLKKLCIAENNFVG 227 (472)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~ 227 (472)
++. .+..+++|+.|++++|.+..
T Consensus 192 ~l~---------~l~~l~~L~~L~l~~n~i~~ 214 (291)
T 1h6t_A 192 DLR---------ALAGLKNLDVLELFSQECLN 214 (291)
T ss_dssp BCG---------GGTTCTTCSEEEEEEEEEEC
T ss_pred CCh---------hhccCCCCCEEECcCCcccC
Confidence 542 25688999999999999875
No 108
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.73 E-value=2.5e-17 Score=141.89 Aligned_cols=151 Identities=18% Similarity=0.245 Sum_probs=130.7
Q ss_pred ccccEEEeecccccCcccccccCccCcceEeccccccccCcchhhcCCCCCcEEEccCCcCccccccchhcccccCeeec
Q 040195 304 STMTHFYIGGNQILGIIHFGIRNLVNLIALGMQSNQLHGTIPDVIGELKNLQILSLFGNFLHGSIPSSLGNLTKLANLEL 383 (472)
Q Consensus 304 ~~l~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l 383 (472)
++++.++++++.+.... .+..+++|++|++++|.+... ..+..+++|++|++++|.+.+..+..+..+++|++|++
T Consensus 44 ~~L~~L~l~~n~i~~l~--~l~~l~~L~~L~l~~n~~~~~--~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L 119 (197)
T 4ezg_A 44 NSLTYITLANINVTDLT--GIEYAHNIKDLTINNIHATNY--NPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDI 119 (197)
T ss_dssp HTCCEEEEESSCCSCCT--TGGGCTTCSEEEEESCCCSCC--GGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEEC
T ss_pred CCccEEeccCCCccChH--HHhcCCCCCEEEccCCCCCcc--hhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEe
Confidence 48999999999998654 588899999999999977633 46888999999999999999878888999999999999
Q ss_pred cCCcccccCCcCccCCCCCceEeecCCc-ccccCChhhhhhcccceEEEcCCCcccccccccccCCCCCceEeccCCeec
Q 040195 384 SSNSLQGNIPLSVGNCQNLIGFDASHIT-LTGALPQQLLSITTLSLYLDLSHNLLNGSLLLQVGNLKNLILLDISGNQFS 462 (472)
Q Consensus 384 ~~~~~~~~~~~~~~~~~~L~~L~ls~~~-~~~~~~~~l~~~~~l~~~L~ls~n~l~~~~~~~l~~~~~L~~L~L~~n~~~ 462 (472)
++|.+++..+..+..+++|+.|++++|. +. .++ .+..+++|+ .|++++|++++. + .+..+++|+.|++++|++.
T Consensus 120 s~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~-~~~-~l~~l~~L~-~L~l~~n~i~~~-~-~l~~l~~L~~L~l~~N~i~ 194 (197)
T 4ezg_A 120 SHSAHDDSILTKINTLPKVNSIDLSYNGAIT-DIM-PLKTLPELK-SLNIQFDGVHDY-R-GIEDFPKLNQLYAFSQTIG 194 (197)
T ss_dssp CSSBCBGGGHHHHTTCSSCCEEECCSCTBCC-CCG-GGGGCSSCC-EEECTTBCCCCC-T-TGGGCSSCCEEEECBC---
T ss_pred cCCccCcHhHHHHhhCCCCCEEEccCCCCcc-ccH-hhcCCCCCC-EEECCCCCCcCh-H-HhccCCCCCEEEeeCcccC
Confidence 9999997778888999999999999998 65 555 688999999 999999999864 3 7899999999999999986
Q ss_pred c
Q 040195 463 G 463 (472)
Q Consensus 463 ~ 463 (472)
+
T Consensus 195 ~ 195 (197)
T 4ezg_A 195 G 195 (197)
T ss_dssp -
T ss_pred C
Confidence 4
No 109
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.72 E-value=8.5e-17 Score=161.40 Aligned_cols=172 Identities=24% Similarity=0.354 Sum_probs=92.9
Q ss_pred cCCCCccEEeccCCcCccCcchhhhcCCCCCEEEccCcccCCCCCcccCCCCCCcEEEcccCcCcccCCccccCCCCCcE
Q 040195 59 GNLSFLRYINLSDNGFHGEIPQEIGNLYRLEKLELSNNSFSGTIPTNLSRCSELTHLRVANNKLEGQIPKEIGSLLKLQT 138 (472)
Q Consensus 59 ~~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~ 138 (472)
..+++|+.|+++++.+... + .+..+++|+.|+|++|.+.+..+ +..+++|+.|++++|.+.. . ..+..+++|++
T Consensus 40 ~~L~~L~~L~l~~n~i~~l-~-~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~-l-~~l~~l~~L~~ 113 (605)
T 1m9s_A 40 NELNSIDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIKD-L-SSLKDLKKLKS 113 (605)
T ss_dssp HHHTTCCCCBCTTCCCCCC-T-TGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCC-C-TTSTTCTTCCE
T ss_pred hcCCCCCEEECcCCCCCCC-h-HHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcCCCCCC-C-hhhccCCCCCE
Confidence 4455566666666555432 2 35556666666666665553322 5556666666666665552 2 24555566666
Q ss_pred EEccccCCCCCCCccccCCCCccEEEecCCccccccccccccCCCccEEEccCCccccccccccccChhhhcCCCCccEE
Q 040195 139 LALYYNNLTGQLPDFVGNLSALQVIYIRGNSLGGKIPTTLGLLRNLVYLNVNENQFWYVSSFSGSLPFDILVNLPNLKKL 218 (472)
Q Consensus 139 L~l~~~~i~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~L~~L 218 (472)
|++++|.+.+ . ..+..+++|+.|++++|.+++. ..+..+++|+.|++++|.+.... . +..+++|+.|
T Consensus 114 L~Ls~N~l~~-l-~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~-------~--l~~l~~L~~L 180 (605)
T 1m9s_A 114 LSLEHNGISD-I-NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIV-------P--LAGLTKLQNL 180 (605)
T ss_dssp EECTTSCCCC-C-GGGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCG-------G--GTTCTTCCEE
T ss_pred EEecCCCCCC-C-ccccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCch-------h--hccCCCCCEE
Confidence 6666665553 2 3355556666666666655532 44555566666666666543221 1 3355566666
Q ss_pred EcccccccccCCccCcCCCCCCEEecCCCcccc
Q 040195 219 CIAENNFVGSIPDSLSNASNLELLELAGNQFEG 251 (472)
Q Consensus 219 ~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~ 251 (472)
+|++|.+.+. ..+..+++|+.|++++|.+..
T Consensus 181 ~Ls~N~i~~l--~~l~~l~~L~~L~L~~N~l~~ 211 (605)
T 1m9s_A 181 YLSKNHISDL--RALAGLKNLDVLELFSQECLN 211 (605)
T ss_dssp ECCSSCCCBC--GGGTTCTTCSEEECCSEEEEC
T ss_pred ECcCCCCCCC--hHHccCCCCCEEEccCCcCcC
Confidence 6666655542 235556666666666665543
No 110
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.71 E-value=1.4e-16 Score=139.62 Aligned_cols=152 Identities=21% Similarity=0.257 Sum_probs=120.7
Q ss_pred EEEECCCCccCcccCccccCCCCccEEeccCCcCccCcchhhhcCCCCCEEEccCcccCCCCCcccCCCCCCcEEEcccC
Q 040195 41 TELDLSNQRIGGVLSPYVGNLSFLRYINLSDNGFHGEIPQEIGNLYRLEKLELSNNSFSGTIPTNLSRCSELTHLRVANN 120 (472)
Q Consensus 41 ~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~ 120 (472)
+.++++++.+...... + .+++++|++++|.+....+..|..+++|++|++++|.+....+..|..+++|++|++++|
T Consensus 14 ~~v~c~~~~l~~iP~~-l--~~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N 90 (220)
T 2v9t_B 14 NIVDCRGKGLTEIPTN-L--PETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGN 90 (220)
T ss_dssp TEEECTTSCCSSCCSS-C--CTTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSS
T ss_pred CEEEcCCCCcCcCCCc-c--CcCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCC
Confidence 3577777777655432 2 267888999998888777778888888999999988888777888888888999999888
Q ss_pred cCcccCCccccCCCCCcEEEccccCCCCCCCccccCCCCccEEEecCCccccccccccccCCCccEEEccCCccc
Q 040195 121 KLEGQIPKEIGSLLKLQTLALYYNNLTGQLPDFVGNLSALQVIYIRGNSLGGKIPTTLGLLRNLVYLNVNENQFW 195 (472)
Q Consensus 121 ~~~~~~~~~l~~l~~L~~L~l~~~~i~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~ 195 (472)
.++...+..|..+++|++|++++|.+.+..+..+..+++|++|++++|.+++..+..+..+++|++|++++|++.
T Consensus 91 ~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 165 (220)
T 2v9t_B 91 KITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFI 165 (220)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEE
T ss_pred cCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcC
Confidence 888555556778888888888888888777778888888888888888888666667778888888888888753
No 111
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.70 E-value=9.3e-17 Score=138.26 Aligned_cols=152 Identities=17% Similarity=0.216 Sum_probs=83.2
Q ss_pred hcCCCCCEEEccCcccCCCCCcccCCCCCCcEEEcccCcCcccCCccccCCCCCcEEEccccCCCCCCCccccCCCCccE
Q 040195 83 GNLYRLEKLELSNNSFSGTIPTNLSRCSELTHLRVANNKLEGQIPKEIGSLLKLQTLALYYNNLTGQLPDFVGNLSALQV 162 (472)
Q Consensus 83 ~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~i~~~~~~~l~~~~~L~~ 162 (472)
+.+++|++|++++|.+. ..+ .+..+++|++|++++|.++ .+..+..+++|++|++++|.+.+..+..+..+++|++
T Consensus 41 ~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~~--~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~ 116 (197)
T 4ezg_A 41 AQMNSLTYITLANINVT-DLT-GIEYAHNIKDLTINNIHAT--NYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTL 116 (197)
T ss_dssp HHHHTCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCCCS--CCGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCE
T ss_pred hhcCCccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCCCC--cchhhhcCCCCCEEEeECCccCcccChhhcCCCCCCE
Confidence 44556666666666665 333 4556666666666666544 2235556666666666666665445555666666666
Q ss_pred EEecCCccccccccccccCCCccEEEccCCc-cccccccccccChhhhcCCCCccEEEcccccccccCCccCcCCCCCCE
Q 040195 163 IYIRGNSLGGKIPTTLGLLRNLVYLNVNENQ-FWYVSSFSGSLPFDILVNLPNLKKLCIAENNFVGSIPDSLSNASNLEL 241 (472)
Q Consensus 163 L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~-l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~ 241 (472)
|++++|.+++..+..+..+++|++|++++|. +.++ + .+..+++|+.|++++|.+++. + .+..+++|+.
T Consensus 117 L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~-------~--~l~~l~~L~~L~l~~n~i~~~-~-~l~~l~~L~~ 185 (197)
T 4ezg_A 117 LDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDI-------M--PLKTLPELKSLNIQFDGVHDY-R-GIEDFPKLNQ 185 (197)
T ss_dssp EECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCC-------G--GGGGCSSCCEEECTTBCCCCC-T-TGGGCSSCCE
T ss_pred EEecCCccCcHhHHHHhhCCCCCEEEccCCCCcccc-------H--hhcCCCCCCEEECCCCCCcCh-H-HhccCCCCCE
Confidence 6666666655455556666666666666664 3222 1 133445555555555554432 1 3444555555
Q ss_pred EecCCCcc
Q 040195 242 LELAGNQF 249 (472)
Q Consensus 242 L~l~~~~~ 249 (472)
|++++|++
T Consensus 186 L~l~~N~i 193 (197)
T 4ezg_A 186 LYAFSQTI 193 (197)
T ss_dssp EEECBC--
T ss_pred EEeeCccc
Confidence 55555544
No 112
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.70 E-value=3.1e-16 Score=137.31 Aligned_cols=151 Identities=24% Similarity=0.283 Sum_probs=127.8
Q ss_pred EEECCCCccCcccCccccCCCCccEEeccCCcCccCcc-hhhhcCCCCCEEEccCcccCCCCCcccCCCCCCcEEEcccC
Q 040195 42 ELDLSNQRIGGVLSPYVGNLSFLRYINLSDNGFHGEIP-QEIGNLYRLEKLELSNNSFSGTIPTNLSRCSELTHLRVANN 120 (472)
Q Consensus 42 ~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~-~~~~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~ 120 (472)
.++++++.++.... .+ ...+++|++++|.+....+ ..|..+++|++|++++|.+.+..+..|..+++|++|++++|
T Consensus 15 ~l~~s~n~l~~iP~-~~--~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N 91 (220)
T 2v70_A 15 TVDCSNQKLNKIPE-HI--PQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSN 91 (220)
T ss_dssp EEECCSSCCSSCCS-CC--CTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred EeEeCCCCcccCcc-CC--CCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCC
Confidence 78888888876543 23 3456899999999886644 55889999999999999998777778999999999999999
Q ss_pred cCcccCCccccCCCCCcEEEccccCCCCCCCccccCCCCccEEEecCCccccccccccccCCCccEEEccCCccc
Q 040195 121 KLEGQIPKEIGSLLKLQTLALYYNNLTGQLPDFVGNLSALQVIYIRGNSLGGKIPTTLGLLRNLVYLNVNENQFW 195 (472)
Q Consensus 121 ~~~~~~~~~l~~l~~L~~L~l~~~~i~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~ 195 (472)
.++...+..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+++..+..|..+++|++|++++|.+.
T Consensus 92 ~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 166 (220)
T 2v70_A 92 RLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFN 166 (220)
T ss_dssp CCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEE
T ss_pred ccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCc
Confidence 998777777889999999999999998777888889999999999999998777888888999999999998864
No 113
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.69 E-value=3.1e-16 Score=157.34 Aligned_cols=174 Identities=21% Similarity=0.276 Sum_probs=149.1
Q ss_pred CCCCceEEEECCCCccCcccCccccCCCCccEEeccCCcCccCcchhhhcCCCCCEEEccCcccCCCCCcccCCCCCCcE
Q 040195 35 HRHQRVTELDLSNQRIGGVLSPYVGNLSFLRYINLSDNGFHGEIPQEIGNLYRLEKLELSNNSFSGTIPTNLSRCSELTH 114 (472)
Q Consensus 35 ~~~~~l~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~ 114 (472)
...++++.|+++++.+.... .+..+++|+.|+|++|.+....+ +..+++|+.|+|++|.+.+ . ..+..+++|++
T Consensus 40 ~~L~~L~~L~l~~n~i~~l~--~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~-l-~~l~~l~~L~~ 113 (605)
T 1m9s_A 40 NELNSIDQIIANNSDIKSVQ--GIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIKD-L-SSLKDLKKLKS 113 (605)
T ss_dssp HHHTTCCCCBCTTCCCCCCT--TGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCC-C-TTSTTCTTCCE
T ss_pred hcCCCCCEEECcCCCCCCCh--HHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcCCCCCC-C-hhhccCCCCCE
Confidence 34578999999999987653 58999999999999999986554 8999999999999999874 3 36899999999
Q ss_pred EEcccCcCcccCCccccCCCCCcEEEccccCCCCCCCccccCCCCccEEEecCCccccccccccccCCCccEEEccCCcc
Q 040195 115 LRVANNKLEGQIPKEIGSLLKLQTLALYYNNLTGQLPDFVGNLSALQVIYIRGNSLGGKIPTTLGLLRNLVYLNVNENQF 194 (472)
Q Consensus 115 L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~i~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l 194 (472)
|++++|.+.. ...+..+++|+.|++++|.+.+. ..+..+++|+.|++++|.+.+..+ +..+++|+.|++++|.+
T Consensus 114 L~Ls~N~l~~--l~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~i 187 (605)
T 1m9s_A 114 LSLEHNGISD--INGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHI 187 (605)
T ss_dssp EECTTSCCCC--CGGGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCC
T ss_pred EEecCCCCCC--CccccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCchh--hccCCCCCEEECcCCCC
Confidence 9999999984 35688999999999999999854 678899999999999999986544 88999999999999998
Q ss_pred ccccccccccChhhhcCCCCccEEEcccccccccC
Q 040195 195 WYVSSFSGSLPFDILVNLPNLKKLCIAENNFVGSI 229 (472)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~ 229 (472)
..+. .+..+++|+.|++++|.+....
T Consensus 188 ~~l~---------~l~~l~~L~~L~L~~N~l~~~p 213 (605)
T 1m9s_A 188 SDLR---------ALAGLKNLDVLELFSQECLNKP 213 (605)
T ss_dssp CBCG---------GGTTCTTCSEEECCSEEEECCC
T ss_pred CCCh---------HHccCCCCCEEEccCCcCcCCc
Confidence 5542 3568899999999999987643
No 114
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.69 E-value=1.4e-15 Score=145.76 Aligned_cols=125 Identities=12% Similarity=0.064 Sum_probs=65.5
Q ss_pred cccccCccCcceEeccccccccCcchhhcCCCCCcEEEccCCcCccccccchhcccccCeeeccCCcccccCCcCccCCC
Q 040195 321 HFGIRNLVNLIALGMQSNQLHGTIPDVIGELKNLQILSLFGNFLHGSIPSSLGNLTKLANLELSSNSLQGNIPLSVGNCQ 400 (472)
Q Consensus 321 ~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~ 400 (472)
...|..+..++.+.+....+. ..+|..+.+|+++.+.++ +......+|..+.+|+.+++.++ ++.....+|..|.
T Consensus 269 ~~~F~~~~~l~~~~~~~~~i~---~~~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~ 343 (394)
T 4fs7_A 269 GSLFYNCSGLKKVIYGSVIVP---EKTFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCT 343 (394)
T ss_dssp SCTTTTCTTCCEEEECSSEEC---TTTTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCT
T ss_pred ccccccccccceeccCceeec---cccccccccccccccccc-cceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCC
Confidence 334555555555555443322 124555666666666544 33234445666666666666543 4433455666666
Q ss_pred CCceEeecCCcccccCChhhhhhcccceEEEcCCCcccccccccccCCCCCceE
Q 040195 401 NLIGFDASHITLTGALPQQLLSITTLSLYLDLSHNLLNGSLLLQVGNLKNLILL 454 (472)
Q Consensus 401 ~L~~L~ls~~~~~~~~~~~l~~~~~l~~~L~ls~n~l~~~~~~~l~~~~~L~~L 454 (472)
+|+.+.+..+ +..-....|.+|.+|+ .+++..+ +. ....+|.++++|+.+
T Consensus 344 ~L~~i~lp~~-l~~I~~~aF~~C~~L~-~i~lp~~-~~-~~~~~F~~c~~L~~I 393 (394)
T 4fs7_A 344 SLSNINFPLS-LRKIGANAFQGCINLK-KVELPKR-LE-QYRYDFEDTTKFKWI 393 (394)
T ss_dssp TCCEECCCTT-CCEECTTTBTTCTTCC-EEEEEGG-GG-GGGGGBCTTCEEEEE
T ss_pred CCCEEEECcc-ccEehHHHhhCCCCCC-EEEECCC-CE-EhhheecCCCCCcEE
Confidence 6666666554 3322234566666666 6666543 11 122456666666654
No 115
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.69 E-value=1.7e-16 Score=150.13 Aligned_cols=175 Identities=22% Similarity=0.275 Sum_probs=113.9
Q ss_pred EEEECCCCccCcccCccccCCCCccEEeccCCcCccCcchhhh-cCCCCCEEEccCcccCCCCCcccCCCCCCcEEEccc
Q 040195 41 TELDLSNQRIGGVLSPYVGNLSFLRYINLSDNGFHGEIPQEIG-NLYRLEKLELSNNSFSGTIPTNLSRCSELTHLRVAN 119 (472)
Q Consensus 41 ~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~-~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~ 119 (472)
+.++++++.+...... + ...+++|+|++|.+....+..+. ++++|++|++++|.+....+..|..+++|++|++++
T Consensus 21 ~~l~c~~~~l~~iP~~-~--~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~ 97 (361)
T 2xot_A 21 NILSCSKQQLPNVPQS-L--PSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSS 97 (361)
T ss_dssp TEEECCSSCCSSCCSS-C--CTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CEEEeCCCCcCccCcc-C--CCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCC
Confidence 3677777777654332 2 24577888888877766666666 778888888888877766666677777888888888
Q ss_pred CcCcccCCccccCCCCCcEEEccccCCCCCCCccccCCCCccEEEecCCcccccccccc---ccCCCccEEEccCCcccc
Q 040195 120 NKLEGQIPKEIGSLLKLQTLALYYNNLTGQLPDFVGNLSALQVIYIRGNSLGGKIPTTL---GLLRNLVYLNVNENQFWY 196 (472)
Q Consensus 120 ~~~~~~~~~~l~~l~~L~~L~l~~~~i~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l---~~~~~L~~L~l~~~~l~~ 196 (472)
|.++...+..|..+++|++|++++|.+....+..|..+++|++|++++|.++......+ ..+++|+.|++++|.+
T Consensus 98 N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l-- 175 (361)
T 2xot_A 98 NHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKL-- 175 (361)
T ss_dssp SCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCC--
T ss_pred CcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCC--
Confidence 77775555567777777777777777776556667777777777777777764333333 4566677777776665
Q ss_pred ccccccccChhhhcCCCC--ccEEEcccccc
Q 040195 197 VSSFSGSLPFDILVNLPN--LKKLCIAENNF 225 (472)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~--L~~L~l~~~~l 225 (472)
..++...+..++. ++.|++.+|.+
T Consensus 176 -----~~l~~~~~~~l~~~~l~~l~l~~N~~ 201 (361)
T 2xot_A 176 -----KKLPLTDLQKLPAWVKNGLYLHNNPL 201 (361)
T ss_dssp -----CCCCHHHHHHSCHHHHTTEECCSSCE
T ss_pred -----CccCHHHhhhccHhhcceEEecCCCc
Confidence 2333334444443 24555555544
No 116
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.68 E-value=1.2e-16 Score=149.38 Aligned_cols=103 Identities=16% Similarity=0.088 Sum_probs=66.7
Q ss_pred CCCCcEEEccCCcCccccccchhcccccCeeeccCCcccccCCcCccCCCCCc-eEeecCCcccccCChhhhhhcccceE
Q 040195 351 LKNLQILSLFGNFLHGSIPSSLGNLTKLANLELSSNSLQGNIPLSVGNCQNLI-GFDASHITLTGALPQQLLSITTLSLY 429 (472)
Q Consensus 351 ~~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~-~L~ls~~~~~~~~~~~l~~~~~l~~~ 429 (472)
+++|+++++++|.++.....+|..+++|+++++.+| ++.....+|..|++|+ .+++.+ .++...+..|.+|++|+ .
T Consensus 225 ~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~-~ 301 (329)
T 3sb4_A 225 MPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLR-Y 301 (329)
T ss_dssp CTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEE-E
T ss_pred cCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCC-E
Confidence 566666666666666555556666666666666665 5544455666677776 777766 44433346677777777 7
Q ss_pred EEcCCCcccccccccccCCCCCceEec
Q 040195 430 LDLSHNLLNGSLLLQVGNLKNLILLDI 456 (472)
Q Consensus 430 L~ls~n~l~~~~~~~l~~~~~L~~L~L 456 (472)
+++++|.++.....+|.++++|+.|+.
T Consensus 302 l~l~~n~i~~I~~~aF~~~~~L~~ly~ 328 (329)
T 3sb4_A 302 VLATGDKITTLGDELFGNGVPSKLIYK 328 (329)
T ss_dssp EEECSSCCCEECTTTTCTTCCCCEEEC
T ss_pred EEeCCCccCccchhhhcCCcchhhhcc
Confidence 777777777666677777777777653
No 117
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.67 E-value=2.5e-15 Score=143.98 Aligned_cols=334 Identities=10% Similarity=0.035 Sum_probs=225.3
Q ss_pred ccCcccCccccCCCCccEEeccCCcCccCcchhhhcCCCCCEEEccCcccCCCCCcccCCCCCCcEEEcccCcCcccCCc
Q 040195 49 RIGGVLSPYVGNLSFLRYINLSDNGFHGEIPQEIGNLYRLEKLELSNNSFSGTIPTNLSRCSELTHLRVANNKLEGQIPK 128 (472)
Q Consensus 49 ~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~ 128 (472)
.++.+...+|..+.+|+.+.|..+ ++.+...+|.+|.+|+.+++..+ +.......|.++..|+.+.+..+ +......
T Consensus 58 ~VtsIg~~AF~~c~~L~~i~lp~~-i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~-l~~i~~~ 134 (394)
T 4fs7_A 58 DVVSIGYAAFQGCRKVTEIKIPST-VREIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLM-LKSIGVE 134 (394)
T ss_dssp EEEEECTTTTTTCTTEEEEECCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTT
T ss_pred eEeEhHHHHhhCCCCceEEEeCCC-ccCcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCc-eeeecce
Confidence 355666778889999999999753 55566778999999999999765 54455677888888888877654 3334555
Q ss_pred cccCCCCCcEEEccccCCCCCCCccccCCCCccEEEecCCccccccccccccCCCccEEEccCCccccccccccccChhh
Q 040195 129 EIGSLLKLQTLALYYNNLTGQLPDFVGNLSALQVIYIRGNSLGGKIPTTLGLLRNLVYLNVNENQFWYVSSFSGSLPFDI 208 (472)
Q Consensus 129 ~l~~l~~L~~L~l~~~~i~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~ 208 (472)
+|..+..++...... +......+|..+++|+.+.+..+. .......|..+.+|+.+.+..+ + ..+....
T Consensus 135 aF~~~~~~~~~~~~~--~~~i~~~aF~~c~~L~~i~l~~~~-~~I~~~~F~~c~~L~~i~l~~~-~-------~~I~~~~ 203 (394)
T 4fs7_A 135 AFKGCDFKEITIPEG--VTVIGDEAFATCESLEYVSLPDSM-ETLHNGLFSGCGKLKSIKLPRN-L-------KIIRDYC 203 (394)
T ss_dssp TTTTCCCSEEECCTT--CCEECTTTTTTCTTCCEEECCTTC-CEECTTTTTTCTTCCBCCCCTT-C-------CEECTTT
T ss_pred eeecccccccccCcc--ccccchhhhcccCCCcEEecCCcc-ceeccccccCCCCceEEEcCCC-c-------eEeCchh
Confidence 666665444333222 222445678888899998887653 2244567788888888888765 2 3445566
Q ss_pred hcCCCCccEEEcccccccccCCccCcCCCCCCEEecCCCcccccccccccccCCCCeEEcCCCcCCCCCCCCcchhhhhc
Q 040195 209 LVNLPNLKKLCIAENNFVGSIPDSLSNASNLELLELAGNQFEGKVSIDFSSLKNLAVLNLERNNLGIGTANDLGFVTFLT 288 (472)
Q Consensus 209 ~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 288 (472)
+..+..|+.+.+..+... +........+|+.+.+... ++......+..+..++.+.+..+...
T Consensus 204 F~~~~~L~~i~~~~~~~~--i~~~~~~~~~l~~i~ip~~-~~~i~~~~f~~~~~l~~~~~~~~~~~-------------- 266 (394)
T 4fs7_A 204 FAECILLENMEFPNSLYY--LGDFALSKTGVKNIIIPDS-FTELGKSVFYGCTDLESISIQNNKLR-------------- 266 (394)
T ss_dssp TTTCTTCCBCCCCTTCCE--ECTTTTTTCCCCEEEECTT-CCEECSSTTTTCSSCCEEEECCTTCE--------------
T ss_pred hccccccceeecCCCceE--eehhhcccCCCceEEECCC-ceecccccccccccceeEEcCCCcce--------------
Confidence 777888888877665432 2223345578888888654 33345566778888888888765432
Q ss_pred ccCCCcCCchhhhccccccEEEeecccccCcccccccCccCcceEeccccccccCcchhhcCCCCCcEEEccCCcCcccc
Q 040195 289 NCSSLKLPHSIANLSSTMTHFYIGGNQILGIIHFGIRNLVNLIALGMQSNQLHGTIPDVIGELKNLQILSLFGNFLHGSI 368 (472)
Q Consensus 289 ~~~~l~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~L~~n~l~~~~ 368 (472)
+....+.....++.+......+ ....|..+.+|+.+.+.++ +......+|..+.+|+++++.++ ++...
T Consensus 267 ------i~~~~F~~~~~l~~~~~~~~~i---~~~~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~ 335 (394)
T 4fs7_A 267 ------IGGSLFYNCSGLKKVIYGSVIV---PEKTFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VEEIG 335 (394)
T ss_dssp ------ECSCTTTTCTTCCEEEECSSEE---CTTTTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CCEEC
T ss_pred ------eeccccccccccceeccCceee---ccccccccccccccccccc-cceechhhhcCCCCCCEEEeCCc-ccEEh
Confidence 1111222233555555554433 3346778888999988765 55455678888999999999755 55456
Q ss_pred ccchhcccccCeeeccCCcccccCCcCccCCCCCceEeecCCcccccCChhhhhhcccc
Q 040195 369 PSSLGNLTKLANLELSSNSLQGNIPLSVGNCQNLIGFDASHITLTGALPQQLLSITTLS 427 (472)
Q Consensus 369 ~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ls~~~~~~~~~~~l~~~~~l~ 427 (472)
..+|..+.+|+.+++..+ ++.....+|..|++|+.+++..+- . .+...|.+|++|+
T Consensus 336 ~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp~~~-~-~~~~~F~~c~~L~ 391 (394)
T 4fs7_A 336 KRSFRGCTSLSNINFPLS-LRKIGANAFQGCINLKKVELPKRL-E-QYRYDFEDTTKFK 391 (394)
T ss_dssp TTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCEEEEEGGG-G-GGGGGBCTTCEEE
T ss_pred HHhccCCCCCCEEEECcc-ccEehHHHhhCCCCCCEEEECCCC-E-EhhheecCCCCCc
Confidence 678889999999999876 655567788999999999997652 2 2345677777776
No 118
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.66 E-value=1.5e-16 Score=148.72 Aligned_cols=77 Identities=13% Similarity=0.006 Sum_probs=52.0
Q ss_pred cccEEEeecccccCcccccccCccCcc-eEeccccccccCcchhhcCCCCCcEEEccCCcCccccccchhcccccCeeec
Q 040195 305 TMTHFYIGGNQILGIIHFGIRNLVNLI-ALGMQSNQLHGTIPDVIGELKNLQILSLFGNFLHGSIPSSLGNLTKLANLEL 383 (472)
Q Consensus 305 ~l~~l~l~~~~~~~~~~~~l~~~~~L~-~L~l~~~~i~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l 383 (472)
+|+.+++..+ +..+...+|..+++|+ .+++.+ .+....+.+|..+++|++++++++.+......+|..+++|+.++.
T Consensus 251 ~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L~~ly~ 328 (329)
T 3sb4_A 251 YLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKITTLGDELFGNGVPSKLIYK 328 (329)
T ss_dssp TCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSSCCCEECTTTTCTTCCCCEEEC
T ss_pred CCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEEeCCCccCccchhhhcCCcchhhhcc
Confidence 3444444433 3444555677777777 777777 566566677778888888888777777666667777888877753
No 119
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.65 E-value=3.8e-16 Score=140.70 Aligned_cols=169 Identities=19% Similarity=0.319 Sum_probs=97.0
Q ss_pred CCCccEEeccCCcCccCcchhhhcCCCCCEEEccCcccCCCCCcccCCCCCCcEEEcccCcCcccCCccccCCCCCcEEE
Q 040195 61 LSFLRYINLSDNGFHGEIPQEIGNLYRLEKLELSNNSFSGTIPTNLSRCSELTHLRVANNKLEGQIPKEIGSLLKLQTLA 140 (472)
Q Consensus 61 ~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~ 140 (472)
+.++..++++.+.+.+.. .+..+++|++|++++|.+. ..+ .+..+++|++|++++|.++.. +. +..+++|++|+
T Consensus 18 l~~l~~l~l~~~~i~~~~--~~~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~L~~N~i~~~-~~-l~~l~~L~~L~ 91 (263)
T 1xeu_A 18 LANAVKQNLGKQSVTDLV--SQKELSGVQNFNGDNSNIQ-SLA-GMQFFTNLKELHLSHNQISDL-SP-LKDLTKLEELS 91 (263)
T ss_dssp HHHHHHHHHTCSCTTSEE--CHHHHTTCSEEECTTSCCC-CCT-TGGGCTTCCEEECCSSCCCCC-GG-GTTCSSCCEEE
T ss_pred HHHHHHHHhcCCCccccc--chhhcCcCcEEECcCCCcc-cch-HHhhCCCCCEEECCCCccCCC-hh-hccCCCCCEEE
Confidence 344555556665555322 3556666666666666655 233 455666666666666666532 22 66666666666
Q ss_pred ccccCCCCCCCccccCCCCccEEEecCCccccccccccccCCCccEEEccCCccccccccccccChhhhcCCCCccEEEc
Q 040195 141 LYYNNLTGQLPDFVGNLSALQVIYIRGNSLGGKIPTTLGLLRNLVYLNVNENQFWYVSSFSGSLPFDILVNLPNLKKLCI 220 (472)
Q Consensus 141 l~~~~i~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~L~~L~l 220 (472)
+++|.+.+ .+. +.. ++|++|++++|.+++. ..+..+++|++|++++|.+.++. .+..+++|+.|++
T Consensus 92 L~~N~l~~-l~~-~~~-~~L~~L~L~~N~l~~~--~~l~~l~~L~~L~Ls~N~i~~~~---------~l~~l~~L~~L~L 157 (263)
T 1xeu_A 92 VNRNRLKN-LNG-IPS-ACLSRLFLDNNELRDT--DSLIHLKNLEILSIRNNKLKSIV---------MLGFLSKLEVLDL 157 (263)
T ss_dssp CCSSCCSC-CTT-CCC-SSCCEEECCSSCCSBS--GGGTTCTTCCEEECTTSCCCBCG---------GGGGCTTCCEEEC
T ss_pred CCCCccCC-cCc-ccc-CcccEEEccCCccCCC--hhhcCcccccEEECCCCcCCCCh---------HHccCCCCCEEEC
Confidence 66666653 222 222 6666666666666532 34566666666666666653331 2345566666666
Q ss_pred ccccccccCCccCcCCCCCCEEecCCCcccc
Q 040195 221 AENNFVGSIPDSLSNASNLELLELAGNQFEG 251 (472)
Q Consensus 221 ~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~ 251 (472)
++|.+.+. ..+..+++|+.|++++|.+..
T Consensus 158 ~~N~i~~~--~~l~~l~~L~~L~l~~N~~~~ 186 (263)
T 1xeu_A 158 HGNEITNT--GGLTRLKKVNWIDLTGQKCVN 186 (263)
T ss_dssp TTSCCCBC--TTSTTCCCCCEEEEEEEEEEC
T ss_pred CCCcCcch--HHhccCCCCCEEeCCCCcccC
Confidence 66666544 446666667777776666653
No 120
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.65 E-value=1.4e-14 Score=138.19 Aligned_cols=88 Identities=7% Similarity=0.066 Sum_probs=44.6
Q ss_pred cccccCccCcceEeccccccccCcchhhcCCCCCcEEEccCCcCccccccchhcccccCeeeccCCcccccCCcCccCCC
Q 040195 321 HFGIRNLVNLIALGMQSNQLHGTIPDVIGELKNLQILSLFGNFLHGSIPSSLGNLTKLANLELSSNSLQGNIPLSVGNCQ 400 (472)
Q Consensus 321 ~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~ 400 (472)
...|..|++|+.+++.+ .+......+|..+++|+.+.|.++ ++.....+|..+ +|+.+++.+|.........+..++
T Consensus 293 ~~aF~~c~~L~~l~l~~-~i~~I~~~aF~~c~~L~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n~~~~l~~~~F~~~~ 369 (401)
T 4fdw_A 293 PYCLEGCPKLARFEIPE-SIRILGQGLLGGNRKVTQLTIPAN-VTQINFSAFNNT-GIKEVKVEGTTPPQVFEKVWYGFP 369 (401)
T ss_dssp TTTTTTCTTCCEECCCT-TCCEECTTTTTTCCSCCEEEECTT-CCEECTTSSSSS-CCCEEEECCSSCCBCCCSSCCCSC
T ss_pred HHHhhCCccCCeEEeCC-ceEEEhhhhhcCCCCccEEEECcc-ccEEcHHhCCCC-CCCEEEEcCCCCcccccccccCCC
Confidence 34555555666666553 244344445555566666666443 333344455555 566666655555433334444442
Q ss_pred -CCceEeecCCc
Q 040195 401 -NLIGFDASHIT 411 (472)
Q Consensus 401 -~L~~L~ls~~~ 411 (472)
.++.|.+..+.
T Consensus 370 ~~l~~l~vp~~~ 381 (401)
T 4fdw_A 370 DDITVIRVPAES 381 (401)
T ss_dssp TTCCEEEECGGG
T ss_pred CCccEEEeCHHH
Confidence 45555555443
No 121
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.64 E-value=1.3e-14 Score=138.50 Aligned_cols=265 Identities=11% Similarity=0.096 Sum_probs=170.2
Q ss_pred CCCccEEEecCCccccccccccccCCCccEEEccCCccccccccccccChhhhcCCCCccEEEcccccccccCCccCcCC
Q 040195 157 LSALQVIYIRGNSLGGKIPTTLGLLRNLVYLNVNENQFWYVSSFSGSLPFDILVNLPNLKKLCIAENNFVGSIPDSLSNA 236 (472)
Q Consensus 157 ~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~ 236 (472)
+..++.+.+..+ ++......|.++ +|+.+.+..+ + ..+....|.++ +|+++.+.. .+.......|.++
T Consensus 112 ~~~l~~i~ip~~-i~~I~~~aF~~~-~L~~i~l~~~-i-------~~I~~~aF~~~-~L~~i~lp~-~l~~I~~~aF~~c 179 (401)
T 4fdw_A 112 LKGYNEIILPNS-VKSIPKDAFRNS-QIAKVVLNEG-L-------KSIGDMAFFNS-TVQEIVFPS-TLEQLKEDIFYYC 179 (401)
T ss_dssp CSSCSEEECCTT-CCEECTTTTTTC-CCSEEECCTT-C-------CEECTTTTTTC-CCCEEECCT-TCCEECSSTTTTC
T ss_pred cCCccEEEECCc-cCEehHhhcccC-CccEEEeCCC-c-------cEECHHhcCCC-CceEEEeCC-CccEehHHHhhCc
Confidence 456666666653 333444556654 6888887665 3 33444455553 578888775 5555566677788
Q ss_pred CCCCEEecCCCcccccccccccccCCCCeEEcCCCcCCCCCCCCcchhhhhcccCCCcCCchhhhccccccEEEeecccc
Q 040195 237 SNLELLELAGNQFEGKVSIDFSSLKNLAVLNLERNNLGIGTANDLGFVTFLTNCSSLKLPHSIANLSSTMTHFYIGGNQI 316 (472)
Q Consensus 237 ~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~l~l~~~~~ 316 (472)
++|+.+++..|.++......|. +.+|+.+.+..+ +. .+....+..+++|+.+.+..+ +
T Consensus 180 ~~L~~l~l~~n~l~~I~~~aF~-~~~L~~l~lp~~-l~-------------------~I~~~aF~~~~~L~~l~l~~~-l 237 (401)
T 4fdw_A 180 YNLKKADLSKTKITKLPASTFV-YAGIEEVLLPVT-LK-------------------EIGSQAFLKTSQLKTIEIPEN-V 237 (401)
T ss_dssp TTCCEEECTTSCCSEECTTTTT-TCCCSEEECCTT-CC-------------------EECTTTTTTCTTCCCEECCTT-C
T ss_pred ccCCeeecCCCcceEechhhEe-ecccCEEEeCCc-hh-------------------eehhhHhhCCCCCCEEecCCC-c
Confidence 8888888887777766666665 577777777643 22 122223333446677777653 4
Q ss_pred cCcccccccCccCcceEeccccccccCcchhhcCCCCCcEEEccCCcCc-----cccccchhcccccCeeeccCCccccc
Q 040195 317 LGIIHFGIRNLVNLIALGMQSNQLHGTIPDVIGELKNLQILSLFGNFLH-----GSIPSSLGNLTKLANLELSSNSLQGN 391 (472)
Q Consensus 317 ~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~L~~n~l~-----~~~~~~l~~~~~L~~L~l~~~~~~~~ 391 (472)
+.+...+|.. .+|+.+.+. +.+......+|..+++|+++.+.++.+. .....+|..+++|+.+++.+ .++..
T Consensus 238 ~~I~~~aF~~-~~L~~i~lp-~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~-~i~~I 314 (401)
T 4fdw_A 238 STIGQEAFRE-SGITTVKLP-NGVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE-SIRIL 314 (401)
T ss_dssp CEECTTTTTT-CCCSEEEEE-TTCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT-TCCEE
T ss_pred cCcccccccc-CCccEEEeC-CCccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC-ceEEE
Confidence 5555556666 678888874 3455455667778888888888776553 34556777788888888874 45545
Q ss_pred CCcCccCCCCCceEeecCCcccccCChhhhhhcccceEEEcCCCcccccccccccCCC-CCceEeccCCee
Q 040195 392 IPLSVGNCQNLIGFDASHITLTGALPQQLLSITTLSLYLDLSHNLLNGSLLLQVGNLK-NLILLDISGNQF 461 (472)
Q Consensus 392 ~~~~~~~~~~L~~L~ls~~~~~~~~~~~l~~~~~l~~~L~ls~n~l~~~~~~~l~~~~-~L~~L~L~~n~~ 461 (472)
...+|..|++|+.+.+..+ ++......|.++ +|+ .+++++|.........|.+++ +++.|.+..+.+
T Consensus 315 ~~~aF~~c~~L~~l~lp~~-l~~I~~~aF~~~-~L~-~l~l~~n~~~~l~~~~F~~~~~~l~~l~vp~~~~ 382 (401)
T 4fdw_A 315 GQGLLGGNRKVTQLTIPAN-VTQINFSAFNNT-GIK-EVKVEGTTPPQVFEKVWYGFPDDITVIRVPAESV 382 (401)
T ss_dssp CTTTTTTCCSCCEEEECTT-CCEECTTSSSSS-CCC-EEEECCSSCCBCCCSSCCCSCTTCCEEEECGGGH
T ss_pred hhhhhcCCCCccEEEECcc-ccEEcHHhCCCC-CCC-EEEEcCCCCcccccccccCCCCCccEEEeCHHHH
Confidence 5667777888888888655 442334566777 777 788888777655566677664 677777776654
No 122
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.64 E-value=6.5e-19 Score=175.71 Aligned_cols=104 Identities=26% Similarity=0.279 Sum_probs=53.9
Q ss_pred cceEeccccccccCcchhhcCCCCCcEEEccCCcCccccccchhcccccCeeeccCCcccccCCcCccCCCCCceEeecC
Q 040195 330 LIALGMQSNQLHGTIPDVIGELKNLQILSLFGNFLHGSIPSSLGNLTKLANLELSSNSLQGNIPLSVGNCQNLIGFDASH 409 (472)
Q Consensus 330 L~~L~l~~~~i~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ls~ 409 (472)
|+.|++++|.+.+ +|. ++.+++|+.|++++|.++ .+|..+..+++|+.|++++|.+++ +| .+..+++|+.|++++
T Consensus 443 L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~ 517 (567)
T 1dce_A 443 VRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLCN 517 (567)
T ss_dssp CSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCS
T ss_pred ceEEEecCCCCCC-CcC-ccccccCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECCC
Confidence 4555555555553 333 455555555555555555 444555555555555555555553 33 455555555555555
Q ss_pred CcccccC-ChhhhhhcccceEEEcCCCcccc
Q 040195 410 ITLTGAL-PQQLLSITTLSLYLDLSHNLLNG 439 (472)
Q Consensus 410 ~~~~~~~-~~~l~~~~~l~~~L~ls~n~l~~ 439 (472)
|.+++.. |..+..+++|+ .|++++|++++
T Consensus 518 N~l~~~~~p~~l~~l~~L~-~L~L~~N~l~~ 547 (567)
T 1dce_A 518 NRLQQSAAIQPLVSCPRLV-LLNLQGNSLCQ 547 (567)
T ss_dssp SCCCSSSTTGGGGGCTTCC-EEECTTSGGGG
T ss_pred CCCCCCCCcHHHhcCCCCC-EEEecCCcCCC
Confidence 5555332 45555555555 55555555554
No 123
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.63 E-value=1.7e-15 Score=136.38 Aligned_cols=147 Identities=24% Similarity=0.302 Sum_probs=127.2
Q ss_pred ccccEEEeecccccCcccccccCccCcceEeccccccccCcchhhcCCCCCcEEEccCCcCccccccchhcccccCeeec
Q 040195 304 STMTHFYIGGNQILGIIHFGIRNLVNLIALGMQSNQLHGTIPDVIGELKNLQILSLFGNFLHGSIPSSLGNLTKLANLEL 383 (472)
Q Consensus 304 ~~l~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l 383 (472)
++++.|++++|.++... .+..+++|++|++++|.+.+..+ +..+++|++|++++|++.+ ++. +.. ++|++|++
T Consensus 41 ~~L~~L~l~~n~i~~l~--~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~L~~N~l~~-l~~-~~~-~~L~~L~L 113 (263)
T 1xeu_A 41 SGVQNFNGDNSNIQSLA--GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELSVNRNRLKN-LNG-IPS-ACLSRLFL 113 (263)
T ss_dssp TTCSEEECTTSCCCCCT--TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEECCSSCCSC-CTT-CCC-SSCCEEEC
T ss_pred CcCcEEECcCCCcccch--HHhhCCCCCEEECCCCccCCChh--hccCCCCCEEECCCCccCC-cCc-ccc-CcccEEEc
Confidence 38999999999998764 68889999999999999996654 8899999999999999985 333 233 99999999
Q ss_pred cCCcccccCCcCccCCCCCceEeecCCcccccCChhhhhhcccceEEEcCCCcccccccccccCCCCCceEeccCCeecc
Q 040195 384 SSNSLQGNIPLSVGNCQNLIGFDASHITLTGALPQQLLSITTLSLYLDLSHNLLNGSLLLQVGNLKNLILLDISGNQFSG 463 (472)
Q Consensus 384 ~~~~~~~~~~~~~~~~~~L~~L~ls~~~~~~~~~~~l~~~~~l~~~L~ls~n~l~~~~~~~l~~~~~L~~L~L~~n~~~~ 463 (472)
++|.+++ + ..+..+++|+.|++++|.+++ ++ .+..+++|+ .|++++|++++. ..+..+++|+.|++++|+++.
T Consensus 114 ~~N~l~~-~-~~l~~l~~L~~L~Ls~N~i~~-~~-~l~~l~~L~-~L~L~~N~i~~~--~~l~~l~~L~~L~l~~N~~~~ 186 (263)
T 1xeu_A 114 DNNELRD-T-DSLIHLKNLEILSIRNNKLKS-IV-MLGFLSKLE-VLDLHGNEITNT--GGLTRLKKVNWIDLTGQKCVN 186 (263)
T ss_dssp CSSCCSB-S-GGGTTCTTCCEEECTTSCCCB-CG-GGGGCTTCC-EEECTTSCCCBC--TTSTTCCCCCEEEEEEEEEEC
T ss_pred cCCccCC-C-hhhcCcccccEEECCCCcCCC-Ch-HHccCCCCC-EEECCCCcCcch--HHhccCCCCCEEeCCCCcccC
Confidence 9999985 3 358899999999999999984 44 688899999 999999999976 678999999999999999975
Q ss_pred c
Q 040195 464 V 464 (472)
Q Consensus 464 ~ 464 (472)
.
T Consensus 187 ~ 187 (263)
T 1xeu_A 187 E 187 (263)
T ss_dssp C
T ss_pred C
Confidence 4
No 124
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.63 E-value=4.5e-16 Score=130.35 Aligned_cols=136 Identities=26% Similarity=0.259 Sum_probs=88.5
Q ss_pred cCcceEeccccccc-cCcchhhcCCCCCcEEEccCCcCccccccchhcccccCeeeccCCcccccCCcCccCCCCCceEe
Q 040195 328 VNLIALGMQSNQLH-GTIPDVIGELKNLQILSLFGNFLHGSIPSSLGNLTKLANLELSSNSLQGNIPLSVGNCQNLIGFD 406 (472)
Q Consensus 328 ~~L~~L~l~~~~i~-~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ 406 (472)
++|++|++++|.+. +.+|..+..+++|++|++++|.+.+. ..+..+++|++|++++|.+++.++..+..+++|+.|+
T Consensus 24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 101 (168)
T 2ell_A 24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLN 101 (168)
T ss_dssp TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEE
T ss_pred ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEe
Confidence 55666666666665 34455556666666666666666543 4556666677777777766654555555577777777
Q ss_pred ecCCcccccCC--hhhhhhcccceEEEcCCCccccccc---ccccCCCCCceEeccCCeeccccCCc
Q 040195 407 ASHITLTGALP--QQLLSITTLSLYLDLSHNLLNGSLL---LQVGNLKNLILLDISGNQFSGVIPVT 468 (472)
Q Consensus 407 ls~~~~~~~~~--~~l~~~~~l~~~L~ls~n~l~~~~~---~~l~~~~~L~~L~L~~n~~~~~~p~~ 468 (472)
+++|.+.+ ++ ..+..+++|+ .|++++|++++..+ ..+..+++|+.|++++|.+. .+|..
T Consensus 102 Ls~N~l~~-~~~~~~l~~l~~L~-~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~-~~~~~ 165 (168)
T 2ell_A 102 LSGNKLKD-ISTLEPLKKLECLK-SLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQ-EAPDS 165 (168)
T ss_dssp CBSSSCCS-SGGGGGGSSCSCCC-EEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSC-BCCSS
T ss_pred ccCCccCc-chhHHHHhcCCCCC-EEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChh-hcccc
Confidence 77777663 33 5666777777 77777777775544 46777788888888888765 45543
No 125
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.61 E-value=3.4e-15 Score=127.71 Aligned_cols=131 Identities=21% Similarity=0.261 Sum_probs=92.5
Q ss_pred ccEEEeecccccCcccccccCccCcceEeccccccccCcch-hhcCCCCCcEEEccCCcCccccccchhcccccCeeecc
Q 040195 306 MTHFYIGGNQILGIIHFGIRNLVNLIALGMQSNQLHGTIPD-VIGELKNLQILSLFGNFLHGSIPSSLGNLTKLANLELS 384 (472)
Q Consensus 306 l~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~-~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~ 384 (472)
.+.++++++.++.+.. .+. +++++|++++|.+.+..+. .|..+++|++|++++|.+++..+..|..+++|++|+++
T Consensus 10 ~~~l~~s~~~l~~ip~-~~~--~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls 86 (192)
T 1w8a_A 10 GTTVDCTGRGLKEIPR-DIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLG 86 (192)
T ss_dssp TTEEECTTSCCSSCCS-CCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECC
T ss_pred CCEEEcCCCCcCcCcc-CCC--CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECC
Confidence 3677777777765433 222 3777777777777755543 46777777777777777776667777777777777777
Q ss_pred CCcccccCCcCccCCCCCceEeecCCcccccCChhhhhhcccceEEEcCCCccccc
Q 040195 385 SNSLQGNIPLSVGNCQNLIGFDASHITLTGALPQQLLSITTLSLYLDLSHNLLNGS 440 (472)
Q Consensus 385 ~~~~~~~~~~~~~~~~~L~~L~ls~~~~~~~~~~~l~~~~~l~~~L~ls~n~l~~~ 440 (472)
+|++++..+..+..+++|++|++++|.+++..|..+..+++++ .|++++|++...
T Consensus 87 ~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~-~L~L~~N~l~c~ 141 (192)
T 1w8a_A 87 ENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLT-SLNLASNPFNCN 141 (192)
T ss_dssp SCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCC-EEECTTCCBCCS
T ss_pred CCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCC-EEEeCCCCccCc
Confidence 7777766666677777777777777777766666777777777 777777777643
No 126
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.60 E-value=1.1e-15 Score=125.12 Aligned_cols=128 Identities=23% Similarity=0.279 Sum_probs=85.0
Q ss_pred cCcceEeccccccc-cCcchhhcCCCCCcEEEccCCcCccccccchhcccccCeeeccCCcccccCCcCccCCCCCceEe
Q 040195 328 VNLIALGMQSNQLH-GTIPDVIGELKNLQILSLFGNFLHGSIPSSLGNLTKLANLELSSNSLQGNIPLSVGNCQNLIGFD 406 (472)
Q Consensus 328 ~~L~~L~l~~~~i~-~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ 406 (472)
++|+.|++++|.+. +.+|..+..+++|++|++++|.+.+. ..+..+++|++|++++|.+++.++..+..+++|++|+
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ 94 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLN 94 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEE
T ss_pred ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEE
Confidence 56666667666665 45555566667777777777766644 5566677777777777777654555555677777777
Q ss_pred ecCCccccc-CChhhhhhcccceEEEcCCCccccccc---ccccCCCCCceEeccC
Q 040195 407 ASHITLTGA-LPQQLLSITTLSLYLDLSHNLLNGSLL---LQVGNLKNLILLDISG 458 (472)
Q Consensus 407 ls~~~~~~~-~~~~l~~~~~l~~~L~ls~n~l~~~~~---~~l~~~~~L~~L~L~~ 458 (472)
+++|.+.+. .+..+..+++++ .|++++|++++..+ ..+..+++|+.|++++
T Consensus 95 ls~N~i~~~~~~~~~~~l~~L~-~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~d 149 (149)
T 2je0_A 95 LSGNKIKDLSTIEPLKKLENLK-SLDLFNCEVTNLNDYRENVFKLLPQLTYLDGYD 149 (149)
T ss_dssp CTTSCCCSHHHHGGGGGCTTCC-EEECTTCGGGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred CCCCcCCChHHHHHHhhCCCCC-EEeCcCCcccchHHHHHHHHHHCCCcccccCCC
Confidence 777777631 225667777777 77777777775544 4667777777777753
No 127
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=99.58 E-value=5.4e-13 Score=127.70 Aligned_cols=138 Identities=11% Similarity=0.104 Sum_probs=96.7
Q ss_pred ccCcccccccCccCcceEeccccccccCcchhhcCCCCCcEEEccCCcCccccccchhcccccCeeeccCCcccccCCcC
Q 040195 316 ILGIIHFGIRNLVNLIALGMQSNQLHGTIPDVIGELKNLQILSLFGNFLHGSIPSSLGNLTKLANLELSSNSLQGNIPLS 395 (472)
Q Consensus 316 ~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~ 395 (472)
+..+...+|..+..|+.+.+.++... ....+|..+++|+.+.+.. .++.....+|..+.+|+.+++.++ ++.....+
T Consensus 253 v~~i~~~aF~~c~~L~~i~lp~~~~~-I~~~aF~~c~~L~~i~l~~-~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~a 329 (394)
T 4gt6_A 253 VARIETHAFDSCAYLASVKMPDSVVS-IGTGAFMNCPALQDIEFSS-RITELPESVFAGCISLKSIDIPEG-ITQILDDA 329 (394)
T ss_dssp EEEECTTTTTTCSSCCEEECCTTCCE-ECTTTTTTCTTCCEEECCT-TCCEECTTTTTTCTTCCEEECCTT-CCEECTTT
T ss_pred ceEcccceeeecccccEEecccccce-ecCcccccccccccccCCC-cccccCceeecCCCCcCEEEeCCc-ccEehHhH
Confidence 33445567888899999998766443 5566788899999999964 344456668889999999999765 55455778
Q ss_pred ccCCCCCceEeecCCcccccCChhhhhhcccceEEEcCCCcccccccccccCCCCCceEeccCCee
Q 040195 396 VGNCQNLIGFDASHITLTGALPQQLLSITTLSLYLDLSHNLLNGSLLLQVGNLKNLILLDISGNQF 461 (472)
Q Consensus 396 ~~~~~~L~~L~ls~~~~~~~~~~~l~~~~~l~~~L~ls~n~l~~~~~~~l~~~~~L~~L~L~~n~~ 461 (472)
|..|.+|+.+.+..+ ++.--...|.+|.+|+ .+++.++... ...+..+.+|+.+.+..+.+
T Consensus 330 F~~C~~L~~i~ip~s-v~~I~~~aF~~C~~L~-~i~~~~~~~~---~~~~~~~~~L~~i~i~~~~~ 390 (394)
T 4gt6_A 330 FAGCEQLERIAIPSS-VTKIPESAFSNCTALN-NIEYSGSRSQ---WNAISTDSGLQNLPVAPGSI 390 (394)
T ss_dssp TTTCTTCCEEEECTT-CCBCCGGGGTTCTTCC-EEEESSCHHH---HHTCBCCCCC----------
T ss_pred hhCCCCCCEEEECcc-cCEEhHhHhhCCCCCC-EEEECCceee---hhhhhccCCCCEEEeCCCCE
Confidence 999999999999765 4423356788999999 9999988654 25677888999998887764
No 128
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.57 E-value=1e-14 Score=121.99 Aligned_cols=130 Identities=22% Similarity=0.266 Sum_probs=54.6
Q ss_pred CCccEEeccCCcCc-cCcchhhhcCCCCCEEEccCcccCCCCCcccCCCCCCcEEEcccCcCcccCCccccCCCCCcEEE
Q 040195 62 SFLRYINLSDNGFH-GEIPQEIGNLYRLEKLELSNNSFSGTIPTNLSRCSELTHLRVANNKLEGQIPKEIGSLLKLQTLA 140 (472)
Q Consensus 62 ~~L~~L~L~~~~~~-~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~ 140 (472)
++|++|++++|.+. ...|..+..+++|++|++++|.+.+. ..+..+++|++|++++|.+....+..+..+++|++|+
T Consensus 24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 101 (168)
T 2ell_A 24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLN 101 (168)
T ss_dssp TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEE
T ss_pred ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEe
Confidence 34444444444443 22333344444444444444444422 3344444444444444444432333333344444444
Q ss_pred ccccCCCCCC-CccccCCCCccEEEecCCccccccc---cccccCCCccEEEccCCc
Q 040195 141 LYYNNLTGQL-PDFVGNLSALQVIYIRGNSLGGKIP---TTLGLLRNLVYLNVNENQ 193 (472)
Q Consensus 141 l~~~~i~~~~-~~~l~~~~~L~~L~l~~~~~~~~~~---~~l~~~~~L~~L~l~~~~ 193 (472)
+++|.+++.. +..+..+++|++|++++|.+++..+ ..+..+++|++|++++|.
T Consensus 102 Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~ 158 (168)
T 2ell_A 102 LSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDRE 158 (168)
T ss_dssp CBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETT
T ss_pred ccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCC
Confidence 4444444211 1334444444444444444432221 133344444444444443
No 129
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.56 E-value=2.7e-14 Score=122.11 Aligned_cols=127 Identities=20% Similarity=0.202 Sum_probs=75.1
Q ss_pred cEEEeecccccCcccccccCccCcceEeccccccccCcchhhcCCCCCcEEEccCCcCccccccchhcccccCeeeccCC
Q 040195 307 THFYIGGNQILGIIHFGIRNLVNLIALGMQSNQLHGTIPDVIGELKNLQILSLFGNFLHGSIPSSLGNLTKLANLELSSN 386 (472)
Q Consensus 307 ~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~~ 386 (472)
+.++++++.++.+... + .++|++|++++|.+. .+|..|..+++|++|++++|.+++..+..|..+++|++|++++|
T Consensus 13 ~~l~~~~~~l~~ip~~-~--~~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N 88 (193)
T 2wfh_A 13 TVVRCSNKGLKVLPKG-I--PRDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYN 88 (193)
T ss_dssp TEEECTTSCCSSCCSC-C--CTTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEcCCCCCCcCCCC-C--CCCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCC
Confidence 4566666666544321 2 245666666666665 44455666666666666666666555555666666666666666
Q ss_pred cccccCCcCccCCCCCceEeecCCcccccCChhhhhhcccceEEEcCCCccc
Q 040195 387 SLQGNIPLSVGNCQNLIGFDASHITLTGALPQQLLSITTLSLYLDLSHNLLN 438 (472)
Q Consensus 387 ~~~~~~~~~~~~~~~L~~L~ls~~~~~~~~~~~l~~~~~l~~~L~ls~n~l~ 438 (472)
.++...+..+..+++|+.|++++|.+....+..+..+++++ .|++++|++.
T Consensus 89 ~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~-~L~L~~N~~~ 139 (193)
T 2wfh_A 89 RLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALS-HLAIGANPLY 139 (193)
T ss_dssp CCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCC-EEECCSSCEE
T ss_pred ccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCcccc-EEEeCCCCee
Confidence 66655555566666666666666666632223455556666 6666666554
No 130
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.56 E-value=8.3e-16 Score=158.14 Aligned_cols=146 Identities=24% Similarity=0.264 Sum_probs=112.7
Q ss_pred ccccEEEeecccccCcccccccCccCcceEeccccccccCcchhhcCCCCCcEEEccCCcCccccccchhcccccCeeec
Q 040195 304 STMTHFYIGGNQILGIIHFGIRNLVNLIALGMQSNQLHGTIPDVIGELKNLQILSLFGNFLHGSIPSSLGNLTKLANLEL 383 (472)
Q Consensus 304 ~~l~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l 383 (472)
+.|+.|++++|.+..+ +..+..+++|++|+|++|.+. .+|..|+.+++|++|+|++|.++ .+|..+..+++|++|+|
T Consensus 224 ~~L~~L~Ls~n~l~~l-~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L 300 (727)
T 4b8c_D 224 QLWHALDLSNLQIFNI-SANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCFQLKYFYF 300 (727)
T ss_dssp CCCCEEECTTSCCSCC-CGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGGGTTCSEEEC
T ss_pred CCCcEEECCCCCCCCC-ChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhcCCCCCCEEEC
Confidence 3677777777777644 334558899999999999998 77888899999999999999998 67888999999999999
Q ss_pred cCCcccccCCcCccCCCCCceEeecCCcccccCChhhhhhcccceEEEcCCCcccccccccccCCCCCceEeccCC
Q 040195 384 SSNSLQGNIPLSVGNCQNLIGFDASHITLTGALPQQLLSITTLSLYLDLSHNLLNGSLLLQVGNLKNLILLDISGN 459 (472)
Q Consensus 384 ~~~~~~~~~~~~~~~~~~L~~L~ls~~~~~~~~~~~l~~~~~l~~~L~ls~n~l~~~~~~~l~~~~~L~~L~L~~n 459 (472)
++|.++ .+|..+..+++|+.|++++|.+.+.+|..+.........+++++|.+++.+|. .|+.|++++|
T Consensus 301 ~~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p~------~l~~l~l~~n 369 (727)
T 4b8c_D 301 FDNMVT-TLPWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLPH------ERRFIEINTD 369 (727)
T ss_dssp CSSCCC-CCCSSTTSCTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCCC------C---------
T ss_pred CCCCCC-ccChhhhcCCCccEEeCCCCccCCCChHHHhhcchhhhHHhhccCcccCcCcc------ccceeEeecc
Confidence 999998 78888999999999999999999777777766544332578999999876664 4566677776
No 131
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=99.54 E-value=1e-12 Score=125.87 Aligned_cols=128 Identities=13% Similarity=0.118 Sum_probs=98.0
Q ss_pred cCcceEeccccccccCcchhhcCCCCCcEEEccCCcCccccccchhcccccCeeeccCCcccccCCcCccCCCCCceEee
Q 040195 328 VNLIALGMQSNQLHGTIPDVIGELKNLQILSLFGNFLHGSIPSSLGNLTKLANLELSSNSLQGNIPLSVGNCQNLIGFDA 407 (472)
Q Consensus 328 ~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l 407 (472)
..+..+.+.+. +......+|..++.|+.+.+.++... ....+|..++.|+.+.+.. .++.....+|..|.+|+.+.+
T Consensus 242 ~~~~~~~ip~~-v~~i~~~aF~~c~~L~~i~lp~~~~~-I~~~aF~~c~~L~~i~l~~-~i~~I~~~aF~~c~~L~~i~l 318 (394)
T 4gt6_A 242 REDPAFKIPNG-VARIETHAFDSCAYLASVKMPDSVVS-IGTGAFMNCPALQDIEFSS-RITELPESVFAGCISLKSIDI 318 (394)
T ss_dssp CCCSEEECCTT-EEEECTTTTTTCSSCCEEECCTTCCE-ECTTTTTTCTTCCEEECCT-TCCEECTTTTTTCTTCCEEEC
T ss_pred cccceEEcCCc-ceEcccceeeecccccEEecccccce-ecCcccccccccccccCCC-cccccCceeecCCCCcCEEEe
Confidence 34455555432 33355568999999999999877554 5667888999999999974 455456778999999999999
Q ss_pred cCCcccccCChhhhhhcccceEEEcCCCcccccccccccCCCCCceEeccCCee
Q 040195 408 SHITLTGALPQQLLSITTLSLYLDLSHNLLNGSLLLQVGNLKNLILLDISGNQF 461 (472)
Q Consensus 408 s~~~~~~~~~~~l~~~~~l~~~L~ls~n~l~~~~~~~l~~~~~L~~L~L~~n~~ 461 (472)
..+ ++.-....|.+|.+|+ .+.+..+ ++.+...+|.+|++|+.+++.++..
T Consensus 319 p~~-v~~I~~~aF~~C~~L~-~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~~~ 369 (394)
T 4gt6_A 319 PEG-ITQILDDAFAGCEQLE-RIAIPSS-VTKIPESAFSNCTALNNIEYSGSRS 369 (394)
T ss_dssp CTT-CCEECTTTTTTCTTCC-EEEECTT-CCBCCGGGGTTCTTCCEEEESSCHH
T ss_pred CCc-ccEehHhHhhCCCCCC-EEEECcc-cCEEhHhHhhCCCCCCEEEECCcee
Confidence 875 4423356789999999 9999765 5556678999999999999999864
No 132
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.54 E-value=3.5e-14 Score=119.85 Aligned_cols=130 Identities=21% Similarity=0.123 Sum_probs=74.0
Q ss_pred ccEEEeecccccCcccccccCccCcceEeccccccccCcchhhcCCCCCcEEEccCCcCccccccchhcccccCeeeccC
Q 040195 306 MTHFYIGGNQILGIIHFGIRNLVNLIALGMQSNQLHGTIPDVIGELKNLQILSLFGNFLHGSIPSSLGNLTKLANLELSS 385 (472)
Q Consensus 306 l~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~ 385 (472)
.+.++++++.++.+... ..++|+.|++++|.+.+..+..+..+++|++|++++|.+.+..+..+..+++|++|++++
T Consensus 9 ~~~l~~~~~~l~~~p~~---~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 85 (177)
T 2o6r_A 9 GTEIRCNSKGLTSVPTG---IPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHE 85 (177)
T ss_dssp TTEEECCSSCCSSCCTT---CCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCEEEecCCCCccCCCC---CCCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCC
Confidence 45666666665544321 124666666666666655555556666666666666666644444555666666666666
Q ss_pred CcccccCCcCccCCCCCceEeecCCcccccCChhhhhhcccceEEEcCCCcccc
Q 040195 386 NSLQGNIPLSVGNCQNLIGFDASHITLTGALPQQLLSITTLSLYLDLSHNLLNG 439 (472)
Q Consensus 386 ~~~~~~~~~~~~~~~~L~~L~ls~~~~~~~~~~~l~~~~~l~~~L~ls~n~l~~ 439 (472)
|.+++..+..+..+++|+.|++++|.+.+..+..+..+++++ .|++++|++.+
T Consensus 86 N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~-~L~l~~N~~~~ 138 (177)
T 2o6r_A 86 NKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQ-KIWLHTNPWDC 138 (177)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCC-EEECCSSCBCC
T ss_pred CCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccC-EEEecCCCeec
Confidence 666644444455566666666666666532222334455555 66666665554
No 133
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.54 E-value=3.3e-14 Score=121.56 Aligned_cols=112 Identities=21% Similarity=0.226 Sum_probs=92.8
Q ss_pred ccccEEEeecccccCcccc-cccCccCcceEeccccccccCcchhhcCCCCCcEEEccCCcCccccccchhcccccCeee
Q 040195 304 STMTHFYIGGNQILGIIHF-GIRNLVNLIALGMQSNQLHGTIPDVIGELKNLQILSLFGNFLHGSIPSSLGNLTKLANLE 382 (472)
Q Consensus 304 ~~l~~l~l~~~~~~~~~~~-~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~ 382 (472)
..++.|+++++.++...+. .+..+++|++|++++|.+.+..|..|..+++|++|++++|.+++..+..|..+++|++|+
T Consensus 29 ~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 108 (192)
T 1w8a_A 29 LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLN 108 (192)
T ss_dssp TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEE
T ss_pred CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCHHHhcCCCCCCEEE
Confidence 3788888888888876654 478888888888888888877788888888888888888888877777788888888888
Q ss_pred ccCCcccccCCcCccCCCCCceEeecCCccccc
Q 040195 383 LSSNSLQGNIPLSVGNCQNLIGFDASHITLTGA 415 (472)
Q Consensus 383 l~~~~~~~~~~~~~~~~~~L~~L~ls~~~~~~~ 415 (472)
+++|++++..+..+..+++|+.|++++|++.+.
T Consensus 109 L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~ 141 (192)
T 1w8a_A 109 LYDNQISCVMPGSFEHLNSLTSLNLASNPFNCN 141 (192)
T ss_dssp CCSSCCCEECTTSSTTCTTCCEEECTTCCBCCS
T ss_pred CCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCc
Confidence 888888877788888888888888888888743
No 134
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.54 E-value=2.7e-16 Score=156.83 Aligned_cols=141 Identities=21% Similarity=0.243 Sum_probs=113.7
Q ss_pred cccccccCccCcceEe-ccccccccCcc--------hhhcCCCCCcEEEccCCcCccccccchhcccccCeeeccCCccc
Q 040195 319 IIHFGIRNLVNLIALG-MQSNQLHGTIP--------DVIGELKNLQILSLFGNFLHGSIPSSLGNLTKLANLELSSNSLQ 389 (472)
Q Consensus 319 ~~~~~l~~~~~L~~L~-l~~~~i~~~~~--------~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~~~~~ 389 (472)
..+..+..+++|+.|+ ++.+.+..... ..+. ...|+.|++++|.+++ +|. +..+++|+.|++++|.++
T Consensus 400 ~~~~~l~~l~~L~~L~~l~~n~~~~L~~l~l~~n~i~~l~-~~~L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~ 476 (567)
T 1dce_A 400 YEKETLQYFSTLKAVDPMRAAYLDDLRSKFLLENSVLKME-YADVRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRLR 476 (567)
T ss_dssp GHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHHH-HTTCSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCCC
T ss_pred CCHHHHHHHHhcccCcchhhcccchhhhhhhhcccccccC-ccCceEEEecCCCCCC-CcC-ccccccCcEeecCccccc
Confidence 3444566666777776 45443321100 0111 1359999999999985 565 899999999999999999
Q ss_pred ccCCcCccCCCCCceEeecCCcccccCChhhhhhcccceEEEcCCCcccccc-cccccCCCCCceEeccCCeeccccC
Q 040195 390 GNIPLSVGNCQNLIGFDASHITLTGALPQQLLSITTLSLYLDLSHNLLNGSL-LLQVGNLKNLILLDISGNQFSGVIP 466 (472)
Q Consensus 390 ~~~~~~~~~~~~L~~L~ls~~~~~~~~~~~l~~~~~l~~~L~ls~n~l~~~~-~~~l~~~~~L~~L~L~~n~~~~~~p 466 (472)
.+|..+..+++|+.|++++|.+++ +| .+..+++|+ .|++++|++++.. |..+..+++|+.|+|++|++++..|
T Consensus 477 -~lp~~~~~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~-~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~ 550 (567)
T 1dce_A 477 -ALPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQ-ELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEG 550 (567)
T ss_dssp -CCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCC-EEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSS
T ss_pred -ccchhhhcCCCCCEEECCCCCCCC-Cc-ccCCCCCCc-EEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCcc
Confidence 889999999999999999999994 77 899999999 9999999999876 8999999999999999999986655
No 135
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.54 E-value=1.4e-14 Score=118.53 Aligned_cols=108 Identities=18% Similarity=0.222 Sum_probs=45.6
Q ss_pred CCccEEeccCCcCc-cCcchhhhcCCCCCEEEccCcccCCCCCcccCCCCCCcEEEcccCcCcccCCccccCCCCCcEEE
Q 040195 62 SFLRYINLSDNGFH-GEIPQEIGNLYRLEKLELSNNSFSGTIPTNLSRCSELTHLRVANNKLEGQIPKEIGSLLKLQTLA 140 (472)
Q Consensus 62 ~~L~~L~L~~~~~~-~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~ 140 (472)
++|++|++++|.+. +..|..+..+++|++|++++|.+.+. ..+..+++|++|++++|.+++..+..+..+++|++|+
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ 94 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLN 94 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEE
T ss_pred ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEE
Confidence 34444444444443 23333344444444444444444322 3344444444444444444432333333344444444
Q ss_pred ccccCCCCC-CCccccCCCCccEEEecCCccc
Q 040195 141 LYYNNLTGQ-LPDFVGNLSALQVIYIRGNSLG 171 (472)
Q Consensus 141 l~~~~i~~~-~~~~l~~~~~L~~L~l~~~~~~ 171 (472)
+++|.+++. .+..+..+++|++|++++|.++
T Consensus 95 ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~ 126 (149)
T 2je0_A 95 LSGNKIKDLSTIEPLKKLENLKSLDLFNCEVT 126 (149)
T ss_dssp CTTSCCCSHHHHGGGGGCTTCCEEECTTCGGG
T ss_pred CCCCcCCChHHHHHHhhCCCCCEEeCcCCccc
Confidence 444444321 1133444444444444444443
No 136
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.52 E-value=1.9e-14 Score=121.28 Aligned_cols=133 Identities=16% Similarity=0.161 Sum_probs=88.8
Q ss_pred ccCccCcceEeccccccccCcchhhcCCCCCcEEEccCCcCccccccchhcccccCeeeccCCcccccCCcCccCCCCCc
Q 040195 324 IRNLVNLIALGMQSNQLHGTIPDVIGELKNLQILSLFGNFLHGSIPSSLGNLTKLANLELSSNSLQGNIPLSVGNCQNLI 403 (472)
Q Consensus 324 l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~ 403 (472)
+..+++|++|++++|.+.. ++......++|++|++++|.+++. ..+..+++|++|++++|.+++..+..+..+++|+
T Consensus 15 ~~~~~~L~~L~l~~n~l~~-i~~~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~ 91 (176)
T 1a9n_A 15 YTNAVRDRELDLRGYKIPV-IENLGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLT 91 (176)
T ss_dssp EECTTSCEEEECTTSCCCS-CCCGGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCC
T ss_pred cCCcCCceEEEeeCCCCch-hHHhhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCCC
Confidence 4456677777777777763 333222234777777777777643 4666777777777777777743333346777777
Q ss_pred eEeecCCcccccCCh--hhhhhcccceEEEcCCCcccccccc----cccCCCCCceEeccCCeec
Q 040195 404 GFDASHITLTGALPQ--QLLSITTLSLYLDLSHNLLNGSLLL----QVGNLKNLILLDISGNQFS 462 (472)
Q Consensus 404 ~L~ls~~~~~~~~~~--~l~~~~~l~~~L~ls~n~l~~~~~~----~l~~~~~L~~L~L~~n~~~ 462 (472)
+|++++|.+. .++. .+..+++++ .|++++|+++.. +. .+..+++|+.|++++|...
T Consensus 92 ~L~L~~N~i~-~~~~~~~l~~l~~L~-~L~l~~N~i~~~-~~~~~~~~~~l~~L~~Ld~~~n~~~ 153 (176)
T 1a9n_A 92 ELILTNNSLV-ELGDLDPLASLKSLT-YLCILRNPVTNK-KHYRLYVIYKVPQVRVLDFQKVKLK 153 (176)
T ss_dssp EEECCSCCCC-CGGGGGGGGGCTTCC-EEECCSSGGGGS-TTHHHHHHHHCTTCSEETTEECCHH
T ss_pred EEECCCCcCC-cchhhHhhhcCCCCC-EEEecCCCCCCc-HhHHHHHHHHCCccceeCCCcCCHH
Confidence 7777777775 4554 667777777 788888877643 43 3677778888888777654
No 137
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.49 E-value=3.8e-13 Score=114.88 Aligned_cols=127 Identities=26% Similarity=0.296 Sum_probs=87.1
Q ss_pred EEEECCCCccCcccCccccCCCCccEEeccCCcCccCcchhhhcCCCCCEEEccCcccCCCCCcccCCCCCCcEEEcccC
Q 040195 41 TELDLSNQRIGGVLSPYVGNLSFLRYINLSDNGFHGEIPQEIGNLYRLEKLELSNNSFSGTIPTNLSRCSELTHLRVANN 120 (472)
Q Consensus 41 ~~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~ 120 (472)
+.++++++.+...... + .++|++|++++|.+. .+|..+.++++|++|++++|.+....+..|..+++|++|++++|
T Consensus 13 ~~l~~~~~~l~~ip~~-~--~~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N 88 (193)
T 2wfh_A 13 TVVRCSNKGLKVLPKG-I--PRDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYN 88 (193)
T ss_dssp TEEECTTSCCSSCCSC-C--CTTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEcCCCCCCcCCCC-C--CCCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCC
Confidence 3577777777654432 2 257788888888777 45567777788888888888777666666777777777777777
Q ss_pred cCcccCCccccCCCCCcEEEccccCCCCCCCccccCCCCccEEEecCCccc
Q 040195 121 KLEGQIPKEIGSLLKLQTLALYYNNLTGQLPDFVGNLSALQVIYIRGNSLG 171 (472)
Q Consensus 121 ~~~~~~~~~l~~l~~L~~L~l~~~~i~~~~~~~l~~~~~L~~L~l~~~~~~ 171 (472)
.++...+..|..+++|++|++++|.++...+..+..+++|+.|++++|.+.
T Consensus 89 ~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 139 (193)
T 2wfh_A 89 RLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLY 139 (193)
T ss_dssp CCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEE
T ss_pred ccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCee
Confidence 777655566777777777777777776444445666666666666666553
No 138
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.49 E-value=2.2e-14 Score=147.52 Aligned_cols=143 Identities=24% Similarity=0.288 Sum_probs=71.4
Q ss_pred ccccCccCcceEeccccccccCcchhhcCCCCCcEEEccCCcCccccccchhcccccCeeeccCCcccccCCcCccCCCC
Q 040195 322 FGIRNLVNLIALGMQSNQLHGTIPDVIGELKNLQILSLFGNFLHGSIPSSLGNLTKLANLELSSNSLQGNIPLSVGNCQN 401 (472)
Q Consensus 322 ~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 401 (472)
..+..++.|+.|+|++|.+. .++..+..+++|++|+|++|.++ .+|..+..+++|++|+|++|.++ .+|..+..+++
T Consensus 218 ~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~ 294 (727)
T 4b8c_D 218 DSKYDDQLWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCFQ 294 (727)
T ss_dssp ----CCCCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGGGTT
T ss_pred hhhccCCCCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhcCCCC
Confidence 34445555555555555555 33333335555555555555555 44555555555555555555555 44555555555
Q ss_pred CceEeecCCcccccCChhhhhhcccceEEEcCCCcccccccccccCCC-CCceEeccCCeeccccCCcc
Q 040195 402 LIGFDASHITLTGALPQQLLSITTLSLYLDLSHNLLNGSLLLQVGNLK-NLILLDISGNQFSGVIPVTL 469 (472)
Q Consensus 402 L~~L~ls~~~~~~~~~~~l~~~~~l~~~L~ls~n~l~~~~~~~l~~~~-~L~~L~L~~n~~~~~~p~~~ 469 (472)
|++|++++|.+. .+|..+..+++|+ .|+|++|.+++..|..+..+. .+..++|++|.+++.+|..+
T Consensus 295 L~~L~L~~N~l~-~lp~~~~~l~~L~-~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p~~l 361 (727)
T 4b8c_D 295 LKYFYFFDNMVT-TLPWEFGNLCNLQ-FLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLPHER 361 (727)
T ss_dssp CSEEECCSSCCC-CCCSSTTSCTTCC-CEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC-
T ss_pred CCEEECCCCCCC-ccChhhhcCCCcc-EEeCCCCccCCCChHHHhhcchhhhHHhhccCcccCcCcccc
Confidence 555555555554 4555555555555 555555555554444443321 11224555555555555543
No 139
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.48 E-value=6.2e-13 Score=112.09 Aligned_cols=128 Identities=23% Similarity=0.246 Sum_probs=91.1
Q ss_pred EEECCCCccCcccCccccCCCCccEEeccCCcCccCcchhhhcCCCCCEEEccCcccCCCCCcccCCCCCCcEEEcccCc
Q 040195 42 ELDLSNQRIGGVLSPYVGNLSFLRYINLSDNGFHGEIPQEIGNLYRLEKLELSNNSFSGTIPTNLSRCSELTHLRVANNK 121 (472)
Q Consensus 42 ~L~l~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 121 (472)
.++++++.+...... ..++|++|++++|.+....+..+..+++|++|++++|.+....+..+..+++|++|++++|.
T Consensus 11 ~l~~~~~~l~~~p~~---~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~ 87 (177)
T 2o6r_A 11 EIRCNSKGLTSVPTG---IPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENK 87 (177)
T ss_dssp EEECCSSCCSSCCTT---CCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred EEEecCCCCccCCCC---CCCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCC
Confidence 455566666554322 23678888888888776666667888888888888888875555667778888888888888
Q ss_pred CcccCCccccCCCCCcEEEccccCCCCCCCccccCCCCccEEEecCCcccc
Q 040195 122 LEGQIPKEIGSLLKLQTLALYYNNLTGQLPDFVGNLSALQVIYIRGNSLGG 172 (472)
Q Consensus 122 ~~~~~~~~l~~l~~L~~L~l~~~~i~~~~~~~l~~~~~L~~L~l~~~~~~~ 172 (472)
++...+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+.+
T Consensus 88 l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~ 138 (177)
T 2o6r_A 88 LQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDC 138 (177)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred ccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeec
Confidence 775555556777888888888887775544555667777777777777654
No 140
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.44 E-value=3.2e-13 Score=113.76 Aligned_cols=131 Identities=18% Similarity=0.179 Sum_probs=76.4
Q ss_pred ccCCCCccEEeccCCcCccCcchhhhcC-CCCCEEEccCcccCCCCCcccCCCCCCcEEEcccCcCcccCCccccCCCCC
Q 040195 58 VGNLSFLRYINLSDNGFHGEIPQEIGNL-YRLEKLELSNNSFSGTIPTNLSRCSELTHLRVANNKLEGQIPKEIGSLLKL 136 (472)
Q Consensus 58 l~~~~~L~~L~L~~~~~~~~~~~~~~~l-~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L 136 (472)
+..+.+|++|++++|.+... +. +..+ ++|++|++++|.+.+. ..+..+++|++|++++|.++...+..+..+++|
T Consensus 15 ~~~~~~L~~L~l~~n~l~~i-~~-~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L 90 (176)
T 1a9n_A 15 YTNAVRDRELDLRGYKIPVI-EN-LGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDL 90 (176)
T ss_dssp EECTTSCEEEECTTSCCCSC-CC-GGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTC
T ss_pred cCCcCCceEEEeeCCCCchh-HH-hhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCC
Confidence 44556666666666666532 32 3333 3677777776666533 456666667777776666664333334666666
Q ss_pred cEEEccccCCCCCCCc--cccCCCCccEEEecCCcccccccc----ccccCCCccEEEccCCcc
Q 040195 137 QTLALYYNNLTGQLPD--FVGNLSALQVIYIRGNSLGGKIPT----TLGLLRNLVYLNVNENQF 194 (472)
Q Consensus 137 ~~L~l~~~~i~~~~~~--~l~~~~~L~~L~l~~~~~~~~~~~----~l~~~~~L~~L~l~~~~l 194 (472)
++|++++|.+. .++. .+..+++|+.|++++|.++ ..+. .+..+++|+.|++++|..
T Consensus 91 ~~L~L~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~i~-~~~~~~~~~~~~l~~L~~Ld~~~n~~ 152 (176)
T 1a9n_A 91 TELILTNNSLV-ELGDLDPLASLKSLTYLCILRNPVT-NKKHYRLYVIYKVPQVRVLDFQKVKL 152 (176)
T ss_dssp CEEECCSCCCC-CGGGGGGGGGCTTCCEEECCSSGGG-GSTTHHHHHHHHCTTCSEETTEECCH
T ss_pred CEEECCCCcCC-cchhhHhhhcCCCCCEEEecCCCCC-CcHhHHHHHHHHCCccceeCCCcCCH
Confidence 66666666665 3343 4556666666666666665 2333 255566666666666553
No 141
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.41 E-value=4.4e-15 Score=127.86 Aligned_cols=132 Identities=25% Similarity=0.262 Sum_probs=103.8
Q ss_pred cccCccCcceEeccccccccCcchhhcCCCCCcEEEccCCcCccccccchhcccccCeeeccCCcccccCCcCccCCCCC
Q 040195 323 GIRNLVNLIALGMQSNQLHGTIPDVIGELKNLQILSLFGNFLHGSIPSSLGNLTKLANLELSSNSLQGNIPLSVGNCQNL 402 (472)
Q Consensus 323 ~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L 402 (472)
.+..+++|++|++++|.+.+ +| .+..+++|++|++++|.+. .++..+..+++|++|++++|.+++ ++ .+..+++|
T Consensus 43 ~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~~~~~L~~L~L~~N~l~~-l~-~~~~l~~L 117 (198)
T 1ds9_A 43 TLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIAS-LS-GIEKLVNL 117 (198)
T ss_dssp HHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHHHHHHCSEEEEEEEECCC-HH-HHHHHHHS
T ss_pred HHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhhcCCcCCEEECcCCcCCc-CC-ccccCCCC
Confidence 67788889999999998885 45 6778889999999999887 566677777889999999998884 44 57778889
Q ss_pred ceEeecCCcccccCC--hhhhhhcccceEEEcCCCcccccccc----------cccCCCCCceEeccCCeecc
Q 040195 403 IGFDASHITLTGALP--QQLLSITTLSLYLDLSHNLLNGSLLL----------QVGNLKNLILLDISGNQFSG 463 (472)
Q Consensus 403 ~~L~ls~~~~~~~~~--~~l~~~~~l~~~L~ls~n~l~~~~~~----------~l~~~~~L~~L~L~~n~~~~ 463 (472)
+.|++++|.+.+ ++ ..+..+++++ .|++++|++.+..|. .+..+++|+.|| +++++.
T Consensus 118 ~~L~l~~N~i~~-~~~~~~l~~l~~L~-~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld--~~~i~~ 186 (198)
T 1ds9_A 118 RVLYMSNNKITN-WGEIDKLAALDKLE-DLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD--GMPVDV 186 (198)
T ss_dssp SEEEESEEECCC-HHHHHHHTTTTTCS-EEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC--CGGGTT
T ss_pred CEEECCCCcCCc-hhHHHHHhcCCCCC-EEEecCCccccccccccchHHHHHHHHHhCCCcEEEC--CcccCH
Confidence 999999998873 33 3677888888 899999988765544 277888888886 676653
No 142
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.41 E-value=2.7e-15 Score=129.18 Aligned_cols=136 Identities=23% Similarity=0.229 Sum_probs=98.9
Q ss_pred CccCcceEeccccccccCcch------hhcCCCCCcEEEccCCcCccccccchhcccccCeeeccCCcccccCCcCccCC
Q 040195 326 NLVNLIALGMQSNQLHGTIPD------VIGELKNLQILSLFGNFLHGSIPSSLGNLTKLANLELSSNSLQGNIPLSVGNC 399 (472)
Q Consensus 326 ~~~~L~~L~l~~~~i~~~~~~------~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~ 399 (472)
..+.++.++++++.+.+..|. .+..+++|++|++++|.+.+ ++ .+..+++|++|++++|.++ .++..+..+
T Consensus 16 ~~~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~~~ 92 (198)
T 1ds9_A 16 ERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDAVA 92 (198)
T ss_dssp HTTCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHHHH
T ss_pred hcccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhhcC
Confidence 344555556666655555444 67778888888888888875 55 7778888888888888887 566666667
Q ss_pred CCCceEeecCCcccccCChhhhhhcccceEEEcCCCccccccc-ccccCCCCCceEeccCCeeccccCC
Q 040195 400 QNLIGFDASHITLTGALPQQLLSITTLSLYLDLSHNLLNGSLL-LQVGNLKNLILLDISGNQFSGVIPV 467 (472)
Q Consensus 400 ~~L~~L~ls~~~~~~~~~~~l~~~~~l~~~L~ls~n~l~~~~~-~~l~~~~~L~~L~L~~n~~~~~~p~ 467 (472)
++|++|++++|.+.+ ++ .+..+++++ .|++++|++++..+ ..+..+++|+.|++++|++++.+|.
T Consensus 93 ~~L~~L~L~~N~l~~-l~-~~~~l~~L~-~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~ 158 (198)
T 1ds9_A 93 DTLEELWISYNQIAS-LS-GIEKLVNLR-VLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKE 158 (198)
T ss_dssp HHCSEEEEEEEECCC-HH-HHHHHHHSS-EEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHT
T ss_pred CcCCEEECcCCcCCc-CC-ccccCCCCC-EEECCCCcCCchhHHHHHhcCCCCCEEEecCCcccccccc
Confidence 888888888888873 44 577788888 88888888875332 4677788888888888888766554
No 143
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.35 E-value=3e-14 Score=134.57 Aligned_cols=163 Identities=18% Similarity=0.130 Sum_probs=115.4
Q ss_pred cccccEEEeecccccCcccccccC-----ccCcceEeccccccccCcchhh-cCCCCCcEEEccCCcCccccccchh---
Q 040195 303 SSTMTHFYIGGNQILGIIHFGIRN-----LVNLIALGMQSNQLHGTIPDVI-GELKNLQILSLFGNFLHGSIPSSLG--- 373 (472)
Q Consensus 303 ~~~l~~l~l~~~~~~~~~~~~l~~-----~~~L~~L~l~~~~i~~~~~~~~-~~~~~L~~L~L~~n~l~~~~~~~l~--- 373 (472)
.+.++.+++++|.++......+.. .++|++|+|++|.+.+.....+ ..+++|++|+|++|.+++.....+.
T Consensus 71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L 150 (372)
T 3un9_A 71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLL 150 (372)
T ss_dssp HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHH
T ss_pred HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHH
Confidence 357889999988887654333332 2689999999998875544333 2356888999999988755444432
Q ss_pred --cccccCeeeccCCccccc----CCcCccCCCCCceEeecCCccccc----CChhhhhhcccceEEEcCCCccccc---
Q 040195 374 --NLTKLANLELSSNSLQGN----IPLSVGNCQNLIGFDASHITLTGA----LPQQLLSITTLSLYLDLSHNLLNGS--- 440 (472)
Q Consensus 374 --~~~~L~~L~l~~~~~~~~----~~~~~~~~~~L~~L~ls~~~~~~~----~~~~l~~~~~l~~~L~ls~n~l~~~--- 440 (472)
..+.|++|++++|.++.. ++..+..+++|++|++++|.+.+. ++..+..++.|+ .|+|++|.+++.
T Consensus 151 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~-~L~Ls~N~i~~~g~~ 229 (372)
T 3un9_A 151 LHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQ-ELNVAYNGAGDTAAL 229 (372)
T ss_dssp HSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCC-EEECCSSCCCHHHHH
T ss_pred HhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcC-eEECCCCCCCHHHHH
Confidence 457899999999988742 334456788899999999988742 245566677888 899999988864
Q ss_pred -ccccccCCCCCceEeccCCeeccccC
Q 040195 441 -LLLQVGNLKNLILLDISGNQFSGVIP 466 (472)
Q Consensus 441 -~~~~l~~~~~L~~L~L~~n~~~~~~p 466 (472)
+...+...++|++|+|++|++++...
T Consensus 230 ~l~~~L~~~~~L~~L~Ls~N~i~~~g~ 256 (372)
T 3un9_A 230 ALARAAREHPSLELLHLYFNELSSEGR 256 (372)
T ss_dssp HHHHHHHHCSSCCEEECTTSSCCHHHH
T ss_pred HHHHHHHhCCCCCEEeccCCCCCHHHH
Confidence 33445566889999999998875443
No 144
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.33 E-value=1.3e-13 Score=130.13 Aligned_cols=133 Identities=18% Similarity=0.172 Sum_probs=66.2
Q ss_pred CcceEeccccccccCcchhh-----cCCCCCcEEEccCCcCccc----cccchhcccccCeeeccCCccccc----CCcC
Q 040195 329 NLIALGMQSNQLHGTIPDVI-----GELKNLQILSLFGNFLHGS----IPSSLGNLTKLANLELSSNSLQGN----IPLS 395 (472)
Q Consensus 329 ~L~~L~l~~~~i~~~~~~~~-----~~~~~L~~L~L~~n~l~~~----~~~~l~~~~~L~~L~l~~~~~~~~----~~~~ 395 (472)
+|+.|+|++|.+.+.....+ ...++|++|+|++|.+++. ++..+..+++|++|+|++|.++.. +...
T Consensus 127 ~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~ 206 (372)
T 3un9_A 127 RARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQ 206 (372)
T ss_dssp TEEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHH
T ss_pred hccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHH
Confidence 44555555555543322222 2345566666666655432 223334555666666666665532 2334
Q ss_pred ccCCCCCceEeecCCccccc----CChhhhhhcccceEEEcCCCcccccccccccCC---C--CCceEe--ccCCeec
Q 040195 396 VGNCQNLIGFDASHITLTGA----LPQQLLSITTLSLYLDLSHNLLNGSLLLQVGNL---K--NLILLD--ISGNQFS 462 (472)
Q Consensus 396 ~~~~~~L~~L~ls~~~~~~~----~~~~l~~~~~l~~~L~ls~n~l~~~~~~~l~~~---~--~L~~L~--L~~n~~~ 462 (472)
+..+++|++|++++|.+++. ++..+..++.|+ .|+|++|.+++.....+..+ . .|+.+. +.++.++
T Consensus 207 L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~-~L~Ls~N~i~~~g~~~L~~~~~~~~~~L~~l~~ll~~~~~~ 283 (372)
T 3un9_A 207 LDRNRQLQELNVAYNGAGDTAALALARAAREHPSLE-LLHLYFNELSSEGRQVLRDLGGAAEGGARVVVSLTEGTAVS 283 (372)
T ss_dssp GGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCC-EEECTTSSCCHHHHHHHHHCC------CEEECCCC----CH
T ss_pred HhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCC-EEeccCCCCCHHHHHHHHHHhcCCCccchhhHhhhcCCccC
Confidence 45556666666666666532 233344456666 77777777765444444333 1 155565 5555554
No 145
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.33 E-value=5e-12 Score=105.57 Aligned_cols=106 Identities=19% Similarity=0.202 Sum_probs=79.0
Q ss_pred cceEeccccccccCcchhhcCCCCCcEEEccCCcCccccccchhcccccCeeeccCCcccccCCcCccCCCCCceEeecC
Q 040195 330 LIALGMQSNQLHGTIPDVIGELKNLQILSLFGNFLHGSIPSSLGNLTKLANLELSSNSLQGNIPLSVGNCQNLIGFDASH 409 (472)
Q Consensus 330 L~~L~l~~~~i~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ls~ 409 (472)
.+.++++++.+.. +|..+ .++|++|++++|.+++..+..|..+++|++|++++|++++..+..+..+++|+.|++++
T Consensus 11 ~~~l~~s~n~l~~-ip~~~--~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~ 87 (170)
T 3g39_A 11 GTTVDCSGKSLAS-VPTGI--PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLND 87 (170)
T ss_dssp TTEEECTTSCCSS-CCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCEEEeCCCCcCc-cCccC--CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCC
Confidence 5678888888874 44433 37788888888888877777788888888888888888855555667788888888888
Q ss_pred CcccccCChhhhhhcccceEEEcCCCcccc
Q 040195 410 ITLTGALPQQLLSITTLSLYLDLSHNLLNG 439 (472)
Q Consensus 410 ~~~~~~~~~~l~~~~~l~~~L~ls~n~l~~ 439 (472)
|.+.+..+..+..+++|+ .|++++|++..
T Consensus 88 N~l~~~~~~~~~~l~~L~-~L~L~~N~~~c 116 (170)
T 3g39_A 88 NQLKSIPRGAFDNLKSLT-HIWLLNNPWDC 116 (170)
T ss_dssp SCCCCCCTTTTTTCTTCC-EEECCSSCBCT
T ss_pred CccCEeCHHHhcCCCCCC-EEEeCCCCCCC
Confidence 888743344577777787 88888887764
No 146
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=99.31 E-value=3.7e-10 Score=107.42 Aligned_cols=166 Identities=11% Similarity=0.076 Sum_probs=100.7
Q ss_pred CCCccEEEcccccccccCCccCcCCCCCCEEecCCCcccccccccccccCCCCeEEcCCCcCCCCCCCCcchhhhhcccC
Q 040195 212 LPNLKKLCIAENNFVGSIPDSLSNASNLELLELAGNQFEGKVSIDFSSLKNLAVLNLERNNLGIGTANDLGFVTFLTNCS 291 (472)
Q Consensus 212 ~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~ 291 (472)
...+..+.+.... .......+..+..|+.+.+..+ +.......+.++..|+.+.+..+ +..
T Consensus 193 ~~~~~~~~~~~~~-~~i~~~~f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~---------------- 253 (379)
T 4h09_A 193 AKTGTEFTIPSTV-KTVTAYGFSYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTS---------------- 253 (379)
T ss_dssp TCCCSEEECCTTC-CEECTTTTTTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCE----------------
T ss_pred cccccccccccce-eEEeecccccccccceeeeccc-eeEEccccccCCccceEEEcCCC-ccE----------------
Confidence 3445555544322 1133344556667777766543 33344555666677777766543 211
Q ss_pred CCcCCchhhhccccccEEEeecccccCcccccccCccCcceEeccccccccCcchhhcCCCCCcEEEccCCcCccccccc
Q 040195 292 SLKLPHSIANLSSTMTHFYIGGNQILGIIHFGIRNLVNLIALGMQSNQLHGTIPDVIGELKNLQILSLFGNFLHGSIPSS 371 (472)
Q Consensus 292 ~l~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~ 371 (472)
+....+.....++.+.+.. .+..+....|..|++|+.+.+.++.+......+|..+.+|+++.|..+ ++.....+
T Consensus 254 ---I~~~aF~~~~~l~~i~l~~-~i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~a 328 (379)
T 4h09_A 254 ---IGSFLLQNCTALKTLNFYA-KVKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYA 328 (379)
T ss_dssp ---ECTTTTTTCTTCCEEEECC-CCSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTT
T ss_pred ---eCccccceeehhccccccc-cceeccccccccccccccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHH
Confidence 1111222223556666643 244455567888888888888888777666678888888999888765 54455668
Q ss_pred hhcccccCeeeccCCcccccCCcCccCCCCC
Q 040195 372 LGNLTKLANLELSSNSLQGNIPLSVGNCQNL 402 (472)
Q Consensus 372 l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L 402 (472)
|..+++|+.+.+..+ ++.....+|..|+.+
T Consensus 329 F~~C~~L~~i~ip~~-v~~I~~~aF~~c~~~ 358 (379)
T 4h09_A 329 FKNCKALSTISYPKS-ITLIESGAFEGSSIT 358 (379)
T ss_dssp TTTCTTCCCCCCCTT-CCEECTTTTTTSSCC
T ss_pred hhCCCCCCEEEECCc-cCEEchhHhhCCCCC
Confidence 888888998888664 554455667666543
No 147
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=99.31 E-value=5.1e-10 Score=106.50 Aligned_cols=140 Identities=9% Similarity=0.072 Sum_probs=84.3
Q ss_pred cccEEEeecccccCcccccccCccCcceEeccccccccCcchhhcCCCCCcEEEccCCcCccccccchhcccccCeeecc
Q 040195 305 TMTHFYIGGNQILGIIHFGIRNLVNLIALGMQSNQLHGTIPDVIGELKNLQILSLFGNFLHGSIPSSLGNLTKLANLELS 384 (472)
Q Consensus 305 ~l~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~ 384 (472)
.++.+.+... +..+....+..+..|+.+.+..+ +......+|..+.+|+.+.+..+ +......+|..+++|+.+.+.
T Consensus 218 ~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~ 294 (379)
T 4h09_A 218 NLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNLTKVVMD 294 (379)
T ss_dssp SCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTTCCEEEEC
T ss_pred ccceeeeccc-eeEEccccccCCccceEEEcCCC-ccEeCccccceeehhcccccccc-ceecccccccccccccccccc
Confidence 4455554322 33344456667777777777655 44344556777777777777654 333444566777777777777
Q ss_pred CCcccccCCcCccCCCCCceEeecCCcccccCChhhhhhcccceEEEcCCCcccccccccccCCCC
Q 040195 385 SNSLQGNIPLSVGNCQNLIGFDASHITLTGALPQQLLSITTLSLYLDLSHNLLNGSLLLQVGNLKN 450 (472)
Q Consensus 385 ~~~~~~~~~~~~~~~~~L~~L~ls~~~~~~~~~~~l~~~~~l~~~L~ls~n~l~~~~~~~l~~~~~ 450 (472)
++.++.....+|..|.+|+.+.+..+ ++.--...|.+|.+|+ .+.+..+ ++.+...+|.++..
T Consensus 295 ~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~-~i~ip~~-v~~I~~~aF~~c~~ 357 (379)
T 4h09_A 295 NSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALS-TISYPKS-ITLIESGAFEGSSI 357 (379)
T ss_dssp CTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCC-CCCCCTT-CCEECTTTTTTSSC
T ss_pred ccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCC-EEEECCc-cCEEchhHhhCCCC
Confidence 77666555666777777777777654 3312235566777777 6766544 33344456666643
No 148
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.30 E-value=1.1e-11 Score=103.87 Aligned_cols=105 Identities=20% Similarity=0.181 Sum_probs=80.2
Q ss_pred ceEeccccccccCcchhhcCCCCCcEEEccCCcCccccccchhcccccCeeeccCCcccccCCcCccCCCCCceEeecCC
Q 040195 331 IALGMQSNQLHGTIPDVIGELKNLQILSLFGNFLHGSIPSSLGNLTKLANLELSSNSLQGNIPLSVGNCQNLIGFDASHI 410 (472)
Q Consensus 331 ~~L~l~~~~i~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ls~~ 410 (472)
+.++++++.+. .+|..+. ++|++|++++|.+.+..+..|..+++|++|++++|++++..+..+..+++|+.|++++|
T Consensus 15 ~~l~~~~n~l~-~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N 91 (174)
T 2r9u_A 15 TLVNCQNIRLA-SVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDN 91 (174)
T ss_dssp SEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred cEEEeCCCCCC-ccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCC
Confidence 67888888887 4555443 78888888888888777778888888888888888888544455678888888888888
Q ss_pred cccccCChhhhhhcccceEEEcCCCcccc
Q 040195 411 TLTGALPQQLLSITTLSLYLDLSHNLLNG 439 (472)
Q Consensus 411 ~~~~~~~~~l~~~~~l~~~L~ls~n~l~~ 439 (472)
.+.+..+..+..+++|+ .|++++|++..
T Consensus 92 ~l~~l~~~~~~~l~~L~-~L~L~~N~~~c 119 (174)
T 2r9u_A 92 HLKSIPRGAFDNLKSLT-HIYLYNNPWDC 119 (174)
T ss_dssp CCCCCCTTTTTTCTTCS-EEECCSSCBCT
T ss_pred ccceeCHHHhccccCCC-EEEeCCCCccc
Confidence 88843333477788888 88888888764
No 149
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.27 E-value=2.3e-11 Score=101.48 Aligned_cols=107 Identities=22% Similarity=0.186 Sum_probs=94.1
Q ss_pred cccEEEeecccccCcccccccCccCcceEeccccccccCcchhhcCCCCCcEEEccCCcCccccccchhcccccCeeecc
Q 040195 305 TMTHFYIGGNQILGIIHFGIRNLVNLIALGMQSNQLHGTIPDVIGELKNLQILSLFGNFLHGSIPSSLGNLTKLANLELS 384 (472)
Q Consensus 305 ~l~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~ 384 (472)
..+.++++++.++.+.. .+ .++|+.|++++|.+.+..+..|..+++|++|++++|++++..+..|..+++|++|+++
T Consensus 10 ~~~~l~~s~n~l~~ip~-~~--~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~ 86 (170)
T 3g39_A 10 SGTTVDCSGKSLASVPT-GI--PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLN 86 (170)
T ss_dssp ETTEEECTTSCCSSCCS-CC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCCEEEeCCCCcCccCc-cC--CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECC
Confidence 46789999999887543 33 3889999999999998888889999999999999999997777778999999999999
Q ss_pred CCcccccCCcCccCCCCCceEeecCCcccc
Q 040195 385 SNSLQGNIPLSVGNCQNLIGFDASHITLTG 414 (472)
Q Consensus 385 ~~~~~~~~~~~~~~~~~L~~L~ls~~~~~~ 414 (472)
+|++++..+..+..+++|+.|++++|++..
T Consensus 87 ~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c 116 (170)
T 3g39_A 87 DNQLKSIPRGAFDNLKSLTHIWLLNNPWDC 116 (170)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCBCT
T ss_pred CCccCEeCHHHhcCCCCCCEEEeCCCCCCC
Confidence 999996666678999999999999999973
No 150
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.25 E-value=3.6e-11 Score=100.67 Aligned_cols=109 Identities=22% Similarity=0.190 Sum_probs=92.9
Q ss_pred ccEEEeecccccCcccccccCccCcceEeccccccccCcchhhcCCCCCcEEEccCCcCccccccchhcccccCeeeccC
Q 040195 306 MTHFYIGGNQILGIIHFGIRNLVNLIALGMQSNQLHGTIPDVIGELKNLQILSLFGNFLHGSIPSSLGNLTKLANLELSS 385 (472)
Q Consensus 306 l~~l~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~ 385 (472)
-+.++++++.++.+.. .+. ++|+.|++++|.+.+..+..|..+++|++|+|++|++++..+..|..+++|++|++++
T Consensus 14 ~~~l~~~~n~l~~iP~-~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~ 90 (174)
T 2r9u_A 14 QTLVNCQNIRLASVPA-GIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLND 90 (174)
T ss_dssp SSEEECCSSCCSSCCS-CCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CcEEEeCCCCCCccCC-CcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCC
Confidence 4688999998876544 333 8899999999999988888999999999999999999976666778999999999999
Q ss_pred CcccccCCcCccCCCCCceEeecCCcccccCCh
Q 040195 386 NSLQGNIPLSVGNCQNLIGFDASHITLTGALPQ 418 (472)
Q Consensus 386 ~~~~~~~~~~~~~~~~L~~L~ls~~~~~~~~~~ 418 (472)
|+++...+..+..+++|+.|++++|++. ..+.
T Consensus 91 N~l~~l~~~~~~~l~~L~~L~L~~N~~~-c~~~ 122 (174)
T 2r9u_A 91 NHLKSIPRGAFDNLKSLTHIYLYNNPWD-CECR 122 (174)
T ss_dssp SCCCCCCTTTTTTCTTCSEEECCSSCBC-TTBG
T ss_pred CccceeCHHHhccccCCCEEEeCCCCcc-cccc
Confidence 9999655556899999999999999998 3443
No 151
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.01 E-value=7.2e-10 Score=104.06 Aligned_cols=105 Identities=22% Similarity=0.176 Sum_probs=85.3
Q ss_pred ceEecccc-ccccCcchhhcCCCCCcEEEccC-CcCccccccchhcccccCeeeccCCcccccCCcCccCCCCCceEeec
Q 040195 331 IALGMQSN-QLHGTIPDVIGELKNLQILSLFG-NFLHGSIPSSLGNLTKLANLELSSNSLQGNIPLSVGNCQNLIGFDAS 408 (472)
Q Consensus 331 ~~L~l~~~-~i~~~~~~~~~~~~~L~~L~L~~-n~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ls 408 (472)
..++.+++ .+. .+|. +..+++|++|+|++ |.+.+..+..|..+++|+.|+|++|.+++..+..+..+++|+.|+|+
T Consensus 11 ~~v~~~~~n~l~-~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~ 88 (347)
T 2ifg_A 11 SGLRCTRDGALD-SLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLS 88 (347)
T ss_dssp SCEECCSSCCCT-TTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECC
T ss_pred CEEEcCCCCCCC-ccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCC
Confidence 34677777 777 5666 88889999999996 88887777788899999999999999998778888999999999999
Q ss_pred CCcccccCChhhhhhcccceEEEcCCCcccc
Q 040195 409 HITLTGALPQQLLSITTLSLYLDLSHNLLNG 439 (472)
Q Consensus 409 ~~~~~~~~~~~l~~~~~l~~~L~ls~n~l~~ 439 (472)
+|.+. .+|........|+ .|+|++|.+..
T Consensus 89 ~N~l~-~~~~~~~~~~~L~-~l~l~~N~~~c 117 (347)
T 2ifg_A 89 FNALE-SLSWKTVQGLSLQ-ELVLSGNPLHC 117 (347)
T ss_dssp SSCCS-CCCSTTTCSCCCC-EEECCSSCCCC
T ss_pred CCccc-eeCHHHcccCCce-EEEeeCCCccC
Confidence 99998 4554444444477 99999998874
No 152
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.99 E-value=1e-09 Score=103.05 Aligned_cols=104 Identities=19% Similarity=0.148 Sum_probs=87.8
Q ss_pred cEEEeecc-cccCcccccccCccCcceEeccc-cccccCcchhhcCCCCCcEEEccCCcCccccccchhcccccCeeecc
Q 040195 307 THFYIGGN-QILGIIHFGIRNLVNLIALGMQS-NQLHGTIPDVIGELKNLQILSLFGNFLHGSIPSSLGNLTKLANLELS 384 (472)
Q Consensus 307 ~~l~l~~~-~~~~~~~~~l~~~~~L~~L~l~~-~~i~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~ 384 (472)
..++++++ .++.+.. +..+++|++|+|++ |.+....+..|..+++|+.|+|++|.+.+..+..|..+++|++|+|+
T Consensus 11 ~~v~~~~~n~l~~ip~--l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~ 88 (347)
T 2ifg_A 11 SGLRCTRDGALDSLHH--LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLS 88 (347)
T ss_dssp SCEECCSSCCCTTTTT--SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECC
T ss_pred CEEEcCCCCCCCccCC--CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCC
Confidence 34677777 7776544 88899999999996 99997777889999999999999999998888889999999999999
Q ss_pred CCcccccCCcCccCCCCCceEeecCCccc
Q 040195 385 SNSLQGNIPLSVGNCQNLIGFDASHITLT 413 (472)
Q Consensus 385 ~~~~~~~~~~~~~~~~~L~~L~ls~~~~~ 413 (472)
+|++++..+..+..++ |+.|++.+|++.
T Consensus 89 ~N~l~~~~~~~~~~~~-L~~l~l~~N~~~ 116 (347)
T 2ifg_A 89 FNALESLSWKTVQGLS-LQELVLSGNPLH 116 (347)
T ss_dssp SSCCSCCCSTTTCSCC-CCEEECCSSCCC
T ss_pred CCccceeCHHHcccCC-ceEEEeeCCCcc
Confidence 9999954444455555 999999999987
No 153
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.92 E-value=1.5e-09 Score=101.51 Aligned_cols=157 Identities=17% Similarity=0.152 Sum_probs=102.6
Q ss_pred cccEEEeeccccc---------CcccccccCccCcceEeccccccccCcchhhcCCCCCcEEEccCCcCccccccchh--
Q 040195 305 TMTHFYIGGNQIL---------GIIHFGIRNLVNLIALGMQSNQLHGTIPDVIGELKNLQILSLFGNFLHGSIPSSLG-- 373 (472)
Q Consensus 305 ~l~~l~l~~~~~~---------~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~-- 373 (472)
+|+.|.+.+.... ..+...+..+|+|+.|+++++.-. ..+. + ..++|++|.+..|.+.......+.
T Consensus 140 ~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l-~l~~-~-~~~~L~~L~L~~~~l~~~~l~~l~~~ 216 (362)
T 2ra8_A 140 HFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNL-SIGK-K-PRPNLKSLEIISGGLPDSVVEDILGS 216 (362)
T ss_dssp TCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTC-BCCS-C-BCTTCSEEEEECSBCCHHHHHHHHHS
T ss_pred hhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCc-eecc-c-cCCCCcEEEEecCCCChHHHHHHHHc
Confidence 7777877543221 112344567789999999887322 2222 3 378899999988887655444444
Q ss_pred cccccCeeeccCC--cccc-----cCCcCc--cCCCCCceEeecCCcccccCChhhh---hhcccceEEEcCCCcccccc
Q 040195 374 NLTKLANLELSSN--SLQG-----NIPLSV--GNCQNLIGFDASHITLTGALPQQLL---SITTLSLYLDLSHNLLNGSL 441 (472)
Q Consensus 374 ~~~~L~~L~l~~~--~~~~-----~~~~~~--~~~~~L~~L~ls~~~~~~~~~~~l~---~~~~l~~~L~ls~n~l~~~~ 441 (472)
.+|+|++|+|+.+ ...+ .+...+ ..+++|+.|++++|.+.+..+..+. .++.|+ .|+|+.|.+++..
T Consensus 217 ~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~-~LdLs~n~L~d~G 295 (362)
T 2ra8_A 217 DLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLE-TMDISAGVLTDEG 295 (362)
T ss_dssp BCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCS-EEECCSSCCBHHH
T ss_pred cCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCC-EEECCCCCCChHH
Confidence 6889999988532 1111 111112 3578999999999988754444444 367788 9999999888643
Q ss_pred ----cccccCCCCCceEeccCCeecccc
Q 040195 442 ----LLQVGNLKNLILLDISGNQFSGVI 465 (472)
Q Consensus 442 ----~~~l~~~~~L~~L~L~~n~~~~~~ 465 (472)
+..+..+++|+.|+|++|.+++..
T Consensus 296 ~~~L~~~L~~l~~L~~L~L~~n~i~d~~ 323 (362)
T 2ra8_A 296 ARLLLDHVDKIKHLKFINMKYNYLSDEM 323 (362)
T ss_dssp HHHHHTTHHHHTTCSEEECCSBBCCHHH
T ss_pred HHHHHhhcccCCcceEEECCCCcCCHHH
Confidence 344456789999999999887553
No 154
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.86 E-value=1.1e-08 Score=95.60 Aligned_cols=61 Identities=31% Similarity=0.323 Sum_probs=41.8
Q ss_pred hhhcCCCCccEEEcccccccccCCccCcCCCCCCEEecCCCccccccccccc--ccCCCCeEEcCC
Q 040195 207 DILVNLPNLKKLCIAENNFVGSIPDSLSNASNLELLELAGNQFEGKVSIDFS--SLKNLAVLNLER 270 (472)
Q Consensus 207 ~~~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~--~l~~L~~L~l~~ 270 (472)
..+..+|+|++|.++++... .++. +. .++|++|.+..+.+.......+. .+|+|++|+|+.
T Consensus 166 ~ll~~~P~L~~L~L~g~~~l-~l~~-~~-~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~ 228 (362)
T 2ra8_A 166 PVLDAMPLLNNLKIKGTNNL-SIGK-KP-RPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYV 228 (362)
T ss_dssp HHHHTCTTCCEEEEECCBTC-BCCS-CB-CTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEEC
T ss_pred HHHhcCCCCcEEEEeCCCCc-eecc-cc-CCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEec
Confidence 44567788888888877322 1222 33 78899999988877655544454 688899988853
No 155
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.73 E-value=2.8e-09 Score=89.99 Aligned_cols=117 Identities=15% Similarity=0.139 Sum_probs=67.1
Q ss_pred cccccCccCcceEecccc-ccccCc----chhhcCCCCCcEEEccCCcCcccc----ccchhcccccCeeeccCCccccc
Q 040195 321 HFGIRNLVNLIALGMQSN-QLHGTI----PDVIGELKNLQILSLFGNFLHGSI----PSSLGNLTKLANLELSSNSLQGN 391 (472)
Q Consensus 321 ~~~l~~~~~L~~L~l~~~-~i~~~~----~~~~~~~~~L~~L~L~~n~l~~~~----~~~l~~~~~L~~L~l~~~~~~~~ 391 (472)
...+...++|++|+|++| .+.+.. ..++...++|++|+|++|.+.+.. ...+...+.|++|+|++|.+...
T Consensus 29 ~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~ 108 (185)
T 1io0_A 29 KRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGS 108 (185)
T ss_dssp HHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHH
T ss_pred HHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHH
Confidence 345566777888888877 776432 334555677777777777776432 33344456677777777766632
Q ss_pred ----CCcCccCCCCCceEee--cCCccccc----CChhhhhhcccceEEEcCCCccc
Q 040195 392 ----IPLSVGNCQNLIGFDA--SHITLTGA----LPQQLLSITTLSLYLDLSHNLLN 438 (472)
Q Consensus 392 ----~~~~~~~~~~L~~L~l--s~~~~~~~----~~~~l~~~~~l~~~L~ls~n~l~ 438 (472)
+...+...++|++|++ ++|.+.+. +...+...+.++ .|++++|.+.
T Consensus 109 g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~-~L~L~~n~i~ 164 (185)
T 1io0_A 109 GILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLL-KFGYHFTQQG 164 (185)
T ss_dssp HHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCC-EEECCCSSHH
T ss_pred HHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcC-EEeccCCCCC
Confidence 2344455556666666 55555422 223333344555 5555555554
No 156
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.69 E-value=7.2e-09 Score=87.47 Aligned_cols=118 Identities=13% Similarity=0.106 Sum_probs=79.4
Q ss_pred cchhhcCCCCCcEEEccCC-cCccc----cccchhcccccCeeeccCCccccc----CCcCccCCCCCceEeecCCcccc
Q 040195 344 IPDVIGELKNLQILSLFGN-FLHGS----IPSSLGNLTKLANLELSSNSLQGN----IPLSVGNCQNLIGFDASHITLTG 414 (472)
Q Consensus 344 ~~~~~~~~~~L~~L~L~~n-~l~~~----~~~~l~~~~~L~~L~l~~~~~~~~----~~~~~~~~~~L~~L~ls~~~~~~ 414 (472)
+...+...+.|++|+|++| .+.+. +...+...+.|++|+|++|.+... +...+...++|++|++++|.+.+
T Consensus 28 l~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~ 107 (185)
T 1io0_A 28 LKRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISG 107 (185)
T ss_dssp HHHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCH
T ss_pred HHHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCH
Confidence 3345666788888888887 77643 334455667788888888877642 33445556778888888888764
Q ss_pred c----CChhhhhhcccceEEEc--CCCccccc----ccccccCCCCCceEeccCCeec
Q 040195 415 A----LPQQLLSITTLSLYLDL--SHNLLNGS----LLLQVGNLKNLILLDISGNQFS 462 (472)
Q Consensus 415 ~----~~~~l~~~~~l~~~L~l--s~n~l~~~----~~~~l~~~~~L~~L~L~~n~~~ 462 (472)
. +...+...+.++ .|++ ++|.+++. +.+.+...++|++|+|++|.+.
T Consensus 108 ~g~~~l~~~L~~n~~L~-~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 108 SGILALVEALQSNTSLI-ELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp HHHHHHHHGGGGCSSCC-EEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred HHHHHHHHHHHhCCCce-EEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence 2 344556666777 8888 77887754 3345555678888888888775
No 157
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.57 E-value=2.3e-08 Score=82.09 Aligned_cols=82 Identities=12% Similarity=0.119 Sum_probs=36.1
Q ss_pred CCcEEEccCCcCccccccchhcccccCeeeccCCc-ccccCCcCccC----CCCCceEeecCCc-ccccCChhhhhhccc
Q 040195 353 NLQILSLFGNFLHGSIPSSLGNLTKLANLELSSNS-LQGNIPLSVGN----CQNLIGFDASHIT-LTGALPQQLLSITTL 426 (472)
Q Consensus 353 ~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~~~-~~~~~~~~~~~----~~~L~~L~ls~~~-~~~~~~~~l~~~~~l 426 (472)
.|++|++++|.+++.....+..+++|++|+|++|. +++.....+.. +++|+.|++++|. +++.-...+..+++|
T Consensus 62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~L 141 (176)
T 3e4g_A 62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRNL 141 (176)
T ss_dssp CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTTC
T ss_pred eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCCC
Confidence 45555555555554444444455555555555553 33222222222 1234444444442 443333333444444
Q ss_pred ceEEEcCCC
Q 040195 427 SLYLDLSHN 435 (472)
Q Consensus 427 ~~~L~ls~n 435 (472)
+ .|++++|
T Consensus 142 ~-~L~L~~c 149 (176)
T 3e4g_A 142 K-YLFLSDL 149 (176)
T ss_dssp C-EEEEESC
T ss_pred C-EEECCCC
Confidence 4 4444444
No 158
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.51 E-value=3.9e-08 Score=80.74 Aligned_cols=84 Identities=13% Similarity=0.140 Sum_probs=61.9
Q ss_pred cCcceEeccccccccCcchhhcCCCCCcEEEccCCc-Cccccccchhcc----cccCeeeccCCc-ccccCCcCccCCCC
Q 040195 328 VNLIALGMQSNQLHGTIPDVIGELKNLQILSLFGNF-LHGSIPSSLGNL----TKLANLELSSNS-LQGNIPLSVGNCQN 401 (472)
Q Consensus 328 ~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~L~~n~-l~~~~~~~l~~~----~~L~~L~l~~~~-~~~~~~~~~~~~~~ 401 (472)
.+|+.|+++++.+++.....+..+++|++|+|++|. +++.....+..+ ++|++|++++|. ++......+..+++
T Consensus 61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~ 140 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRN 140 (176)
T ss_dssp CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTT
T ss_pred ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCC
Confidence 357777888777777666667778888888888884 666655556553 478888888885 77555555677888
Q ss_pred CceEeecCCc
Q 040195 402 LIGFDASHIT 411 (472)
Q Consensus 402 L~~L~ls~~~ 411 (472)
|+.|++++|+
T Consensus 141 L~~L~L~~c~ 150 (176)
T 3e4g_A 141 LKYLFLSDLP 150 (176)
T ss_dssp CCEEEEESCT
T ss_pred CCEEECCCCC
Confidence 8888888885
No 159
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.11 E-value=1.1e-06 Score=77.94 Aligned_cols=40 Identities=30% Similarity=0.330 Sum_probs=20.4
Q ss_pred CCCCCcEEEccCCcCcc--ccccchhcccccCeeeccCCccc
Q 040195 350 ELKNLQILSLFGNFLHG--SIPSSLGNLTKLANLELSSNSLQ 389 (472)
Q Consensus 350 ~~~~L~~L~L~~n~l~~--~~~~~l~~~~~L~~L~l~~~~~~ 389 (472)
.+++|++|+|++|.+.+ .++..+..+++|+.|+|++|.+.
T Consensus 168 ~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~ 209 (267)
T 3rw6_A 168 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELK 209 (267)
T ss_dssp HCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCC
T ss_pred hCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccC
Confidence 34555555555555553 22233444555555555555554
No 160
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.05 E-value=3.5e-06 Score=74.55 Aligned_cols=80 Identities=29% Similarity=0.419 Sum_probs=55.1
Q ss_pred cCccCcceEecccccccc--CcchhhcCCCCCcEEEccCCcCccccccchhccc--ccCeeeccCCcccccCCc------
Q 040195 325 RNLVNLIALGMQSNQLHG--TIPDVIGELKNLQILSLFGNFLHGSIPSSLGNLT--KLANLELSSNSLQGNIPL------ 394 (472)
Q Consensus 325 ~~~~~L~~L~l~~~~i~~--~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~--~L~~L~l~~~~~~~~~~~------ 394 (472)
..+++|+.|+|++|.+.+ .++..+..+++|+.|+|++|.+.+. ..+..+. +|++|++++|++.+.++.
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~ 244 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTFRDQSTYIS 244 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHH
T ss_pred hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccccCcchhHHH
Confidence 456888999999998886 3345667889999999999988754 2233333 788888888887754431
Q ss_pred -CccCCCCCceEe
Q 040195 395 -SVGNCQNLIGFD 406 (472)
Q Consensus 395 -~~~~~~~L~~L~ 406 (472)
.+..+|+|+.||
T Consensus 245 ~il~~~P~L~~LD 257 (267)
T 3rw6_A 245 AIRERFPKLLRLD 257 (267)
T ss_dssp HHHHHCTTCCEES
T ss_pred HHHHHCcccCeEC
Confidence 234456665554
No 161
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.81 E-value=9.8e-06 Score=67.76 Aligned_cols=115 Identities=15% Similarity=0.135 Sum_probs=72.1
Q ss_pred cccCccCcceEecccc-ccccC----cchhhcCCCCCcEEEccCCcCcccc----ccchhcccccCeeeccCCccccc--
Q 040195 323 GIRNLVNLIALGMQSN-QLHGT----IPDVIGELKNLQILSLFGNFLHGSI----PSSLGNLTKLANLELSSNSLQGN-- 391 (472)
Q Consensus 323 ~l~~~~~L~~L~l~~~-~i~~~----~~~~~~~~~~L~~L~L~~n~l~~~~----~~~l~~~~~L~~L~l~~~~~~~~-- 391 (472)
.+..-+.|++|+|+++ .|.+. +.+++...+.|+.|+|++|.+.+.. .+++...+.|++|+|++|.|...
T Consensus 36 ll~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga 115 (197)
T 1pgv_A 36 LREDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELL 115 (197)
T ss_dssp HHTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHH
T ss_pred HHhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHH
Confidence 3445567888888775 66543 3445666778888888888876543 33444667788888888877743
Q ss_pred --CCcCccCCCCCceEeecCCc---ccc----cCChhhhhhcccceEEEcCCCccc
Q 040195 392 --IPLSVGNCQNLIGFDASHIT---LTG----ALPQQLLSITTLSLYLDLSHNLLN 438 (472)
Q Consensus 392 --~~~~~~~~~~L~~L~ls~~~---~~~----~~~~~l~~~~~l~~~L~ls~n~l~ 438 (472)
+..++...++|++|+++++. +.+ .+...+...+.+. .|+++.|.+.
T Consensus 116 ~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~-~L~l~~~~~g 170 (197)
T 1pgv_A 116 ARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLL-RVGISFASME 170 (197)
T ss_dssp HHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCC-EEECCCCCHH
T ss_pred HHHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcC-eEeccCCCcc
Confidence 33445556677777776542 221 2334555566666 7777666554
No 162
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.73 E-value=1.2e-05 Score=67.23 Aligned_cols=116 Identities=10% Similarity=0.157 Sum_probs=88.3
Q ss_pred chhhcCCCCCcEEEccCC-cCccc----cccchhcccccCeeeccCCccccc----CCcCccCCCCCceEeecCCccccc
Q 040195 345 PDVIGELKNLQILSLFGN-FLHGS----IPSSLGNLTKLANLELSSNSLQGN----IPLSVGNCQNLIGFDASHITLTGA 415 (472)
Q Consensus 345 ~~~~~~~~~L~~L~L~~n-~l~~~----~~~~l~~~~~L~~L~l~~~~~~~~----~~~~~~~~~~L~~L~ls~~~~~~~ 415 (472)
...+..-+.|++|+|+++ .+.+. +.+++.....|+.|+|++|.+... +...+...++|+.|+++.|.|.+.
T Consensus 34 ~~ll~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~ 113 (197)
T 1pgv_A 34 NRLREDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPE 113 (197)
T ss_dssp HHHHTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHH
T ss_pred HHHHhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHH
Confidence 345567799999999986 77643 456677789999999999999854 334455779999999999999743
Q ss_pred ----CChhhhhhcccceEEEcCCC---ccccc----ccccccCCCCCceEeccCCee
Q 040195 416 ----LPQQLLSITTLSLYLDLSHN---LLNGS----LLLQVGNLKNLILLDISGNQF 461 (472)
Q Consensus 416 ----~~~~l~~~~~l~~~L~ls~n---~l~~~----~~~~l~~~~~L~~L~L~~n~~ 461 (472)
+...+.....|+ .|+|+++ .+++. +.+.+..-+.|+.|+++.|.+
T Consensus 114 Ga~ala~aL~~N~tL~-~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~~ 169 (197)
T 1pgv_A 114 LLARLLRSTLVTQSIV-EFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASM 169 (197)
T ss_dssp HHHHHHHHTTTTCCCS-EEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCCH
T ss_pred HHHHHHHHHhhCCcee-EEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCCc
Confidence 344566667788 9999865 55542 446677778999999988764
No 163
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=96.35 E-value=0.0044 Score=48.15 Aligned_cols=56 Identities=16% Similarity=0.138 Sum_probs=28.1
Q ss_pred eeeccCCccc-ccCCcCccCCCCCceEeecCCcccccCChhhhhhcccceEEEcCCCccc
Q 040195 380 NLELSSNSLQ-GNIPLSVGNCQNLIGFDASHITLTGALPQQLLSITTLSLYLDLSHNLLN 438 (472)
Q Consensus 380 ~L~l~~~~~~-~~~~~~~~~~~~L~~L~ls~~~~~~~~~~~l~~~~~l~~~L~ls~n~l~ 438 (472)
.++.+++.++ ..+|.. -.++|+.|+|++|.++..-+..|..+++++ .|+|++|.+.
T Consensus 12 ~v~Cs~~~L~~~~vP~~--lp~~l~~L~Ls~N~l~~l~~~~f~~l~~L~-~L~L~~NP~~ 68 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTA--FPVDTTELVLTGNNLTALPPGLLDALPALR-TAHLGANPWR 68 (130)
T ss_dssp EEECCSSCCCTTTSCSC--CCTTCSEEECTTSCCSSCCTTTGGGCTTCC-EEECCSSCCB
T ss_pred EEEeCCCCCccccCCCC--CCcCCCEEECCCCcCCccChhhhhhccccC-EEEecCCCee
Confidence 4555555554 233322 123566666666666522223445555555 6666666543
No 164
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=95.62 E-value=0.019 Score=44.54 Aligned_cols=35 Identities=31% Similarity=0.317 Sum_probs=13.9
Q ss_pred CcEEEccCCcCccccccchhcccccCeeeccCCcc
Q 040195 354 LQILSLFGNFLHGSIPSSLGNLTKLANLELSSNSL 388 (472)
Q Consensus 354 L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~~~~ 388 (472)
|++|+|++|.++..-+..|..+++|+.|+|.+|++
T Consensus 33 l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~ 67 (130)
T 3rfe_A 33 TTELVLTGNNLTALPPGLLDALPALRTAHLGANPW 67 (130)
T ss_dssp CSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCC
T ss_pred CCEEECCCCcCCccChhhhhhccccCEEEecCCCe
Confidence 44444444444333333333344444444444433
No 165
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=80.63 E-value=1.8 Score=31.39 Aligned_cols=47 Identities=15% Similarity=0.141 Sum_probs=25.9
Q ss_pred cccCcccccccCccCcceEeccccccccCcchhhcCCCCCcEEEccCC
Q 040195 315 QILGIIHFGIRNLVNLIALGMQSNQLHGTIPDVIGELKNLQILSLFGN 362 (472)
Q Consensus 315 ~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~~~~L~~L~L~~n 362 (472)
.++.+....|..|++|+.+.|..+ ++.....+|..|.+|+.+.+.+.
T Consensus 7 ~vt~I~~~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~~ 53 (100)
T 2lz0_A 7 PVVGMDKSLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILTGE 53 (100)
T ss_dssp CCCSSCSCTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEECCS
T ss_pred ccCEecHHHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEcCC
Confidence 344445556666666666666654 22244455666666666666443
No 166
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=76.21 E-value=7.7 Score=27.92 Aligned_cols=47 Identities=13% Similarity=0.110 Sum_probs=28.1
Q ss_pred ccccCcchhhcCCCCCcEEEccCCcCccccccchhcccccCeeeccCC
Q 040195 339 QLHGTIPDVIGELKNLQILSLFGNFLHGSIPSSLGNLTKLANLELSSN 386 (472)
Q Consensus 339 ~i~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~L~~L~l~~~ 386 (472)
.++.....+|..|.+|+++.|..+ ++.....+|..|.+|+.+.+.+.
T Consensus 7 ~vt~I~~~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~~ 53 (100)
T 2lz0_A 7 PVVGMDKSLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILTGE 53 (100)
T ss_dssp CCCSSCSCTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEECCS
T ss_pred ccCEecHHHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEcCC
Confidence 344444456677777777777655 22244556666777777766653
Done!