BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 040196
(83 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q94DE2|BD31A_ORYSJ Protein BUD31 homolog 1 OS=Oryza sativa subsp. japonica
GN=Os01g0857700 PE=2 SV=1
Length = 145
Score = 106 bits (264), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 58/113 (51%), Positives = 65/113 (57%), Gaps = 41/113 (36%)
Query: 1 MPKVKTNRVQNPEGWELIEPTLREL----------------------------------- 25
MPK+KT+RV+ P GWELIEPT+REL
Sbjct: 1 MPKIKTSRVKYPGGWELIEPTIRELDAKMREAENDTHDGKRKCEALWPIFRISHQRSRYI 60
Query: 26 ------QKEISMELYEFCLDQGYAVRNLIAKGKQPGYERLCCLRCMQPHDHNF 72
+KEIS ELYEFCLDQGYA RNLIAK K+PGYERLCCLRC+Q DHNF
Sbjct: 61 YDLYYRRKEISKELYEFCLDQGYADRNLIAKWKKPGYERLCCLRCIQTRDHNF 113
>sp|Q65WT0|BD31B_ORYSJ Protein BUD31 homolog 2 OS=Oryza sativa subsp. japonica
GN=Os05g0446300 PE=2 SV=1
Length = 145
Score = 104 bits (260), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 57/113 (50%), Positives = 66/113 (58%), Gaps = 41/113 (36%)
Query: 1 MPKVKTNRVQNPEGWELIEPTLRELQ---------------------------------- 26
MPK+KT+RV+ PEGWELIEPTLR+L+
Sbjct: 1 MPKIKTSRVKYPEGWELIEPTLRDLEAKMREAENDPHDGKRKCEALWPIFRISHQKSRYI 60
Query: 27 -------KEISMELYEFCLDQGYAVRNLIAKGKQPGYERLCCLRCMQPHDHNF 72
KEIS ELYEFCLDQG+A +NLIAK K+PGYERLCCLRC+Q DHNF
Sbjct: 61 YDLYYRRKEISKELYEFCLDQGHADKNLIAKWKKPGYERLCCLRCIQTRDHNF 113
>sp|P35682|BD31C_ORYSJ Protein BUD31 homolog 3 OS=Oryza sativa subsp. japonica
GN=Os12g0149800 PE=2 SV=2
Length = 145
Score = 97.8 bits (242), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 55/113 (48%), Positives = 63/113 (55%), Gaps = 41/113 (36%)
Query: 1 MPKVKTNRVQNPEGWELIEPTLREL----------------------------------- 25
MPK+KT+ V+ P+GWELIEPTL EL
Sbjct: 1 MPKIKTSGVKYPDGWELIEPTLSELHSKMREAENDPHDGRRKCEALWPIFKINHQRSRYL 60
Query: 26 ------QKEISMELYEFCLDQGYAVRNLIAKGKQPGYERLCCLRCMQPHDHNF 72
+KEIS ELYEFCLDQG+A RNLIAK K+ GYERLCCLRC+Q DHNF
Sbjct: 61 YDLYYNRKEISQELYEFCLDQGHADRNLIAKWKKQGYERLCCLRCIQTRDHNF 113
>sp|Q6PGH1|BUD31_MOUSE Protein BUD31 homolog OS=Mus musculus GN=Bud31 PE=2 SV=1
Length = 103
Score = 97.1 bits (240), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 45/75 (60%), Positives = 57/75 (76%)
Query: 1 MPKVKTNRVQNPEGWELIEPTLRELQKEISMELYEFCLDQGYAVRNLIAKGKQPGYERLC 60
MPKVK +R P+GWELIEPTL EL +++ ELYE+C+ +GYA +NLIAK K+ GYE LC
Sbjct: 1 MPKVKRSRKAPPDGWELIEPTLDELDQKMREELYEYCIKEGYADKNLIAKWKKQGYENLC 60
Query: 61 CLRCMQPHDHNFQMH 75
CLRC+Q D NF +
Sbjct: 61 CLRCIQTRDTNFGTN 75
>sp|O70454|BUD31_RAT Protein BUD31 homolog OS=Rattus norvegicus GN=Bud31 PE=2 SV=2
Length = 144
Score = 82.0 bits (201), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 48/113 (42%), Positives = 57/113 (50%), Gaps = 41/113 (36%)
Query: 1 MPKVKTNRVQNPEGWELIEPTLREL----------------------------------- 25
MPKVK +R P+GWELIEPTL EL
Sbjct: 1 MPKVKRSRKAPPDGWELIEPTLDELDQKMREAETEPHEGKRKVESLWPIFRIHHQKTRYI 60
Query: 26 ------QKEISMELYEFCLDQGYAVRNLIAKGKQPGYERLCCLRCMQPHDHNF 72
+K IS ELYE+C+ +GYA +NLIAK K+ GYE LCCLRC+Q D NF
Sbjct: 61 FDLFYKRKAISRELYEYCIKEGYADKNLIAKWKKQGYENLCCLRCIQTRDTNF 113
>sp|P41223|BUD31_HUMAN Protein BUD31 homolog OS=Homo sapiens GN=BUD31 PE=1 SV=2
Length = 144
Score = 82.0 bits (201), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 48/113 (42%), Positives = 57/113 (50%), Gaps = 41/113 (36%)
Query: 1 MPKVKTNRVQNPEGWELIEPTLREL----------------------------------- 25
MPKVK +R P+GWELIEPTL EL
Sbjct: 1 MPKVKRSRKAPPDGWELIEPTLDELDQKMREAETEPHEGKRKVESLWPIFRIHHQKTRYI 60
Query: 26 ------QKEISMELYEFCLDQGYAVRNLIAKGKQPGYERLCCLRCMQPHDHNF 72
+K IS ELYE+C+ +GYA +NLIAK K+ GYE LCCLRC+Q D NF
Sbjct: 61 FDLFYKRKAISRELYEYCIKEGYADKNLIAKWKKQGYENLCCLRCIQTRDTNF 113
>sp|Q2NKU3|BUD31_BOVIN Protein BUD31 homolog OS=Bos taurus GN=BUD31 PE=2 SV=1
Length = 144
Score = 82.0 bits (201), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 48/113 (42%), Positives = 57/113 (50%), Gaps = 41/113 (36%)
Query: 1 MPKVKTNRVQNPEGWELIEPTLREL----------------------------------- 25
MPKVK +R P+GWELIEPTL EL
Sbjct: 1 MPKVKRSRKAPPDGWELIEPTLDELDQKMREAETEPHEGKRKVESLWPIFRIHHQKTRYI 60
Query: 26 ------QKEISMELYEFCLDQGYAVRNLIAKGKQPGYERLCCLRCMQPHDHNF 72
+K IS ELYE+C+ +GYA +NLIAK K+ GYE LCCLRC+Q D NF
Sbjct: 61 FDLFYKRKAISRELYEYCIKEGYADKNLIAKWKKQGYENLCCLRCIQTRDTNF 113
>sp|P12805|BUD31_XENLA Protein BUD31 homolog OS=Xenopus laevis GN=bud31 PE=2 SV=1
Length = 144
Score = 80.1 bits (196), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 47/113 (41%), Positives = 57/113 (50%), Gaps = 41/113 (36%)
Query: 1 MPKVKTNRVQNPEGWELIEPTLREL----------------------------------- 25
MPKVK +R P+GWELIEPTL EL
Sbjct: 1 MPKVKRSRKPPPDGWELIEPTLDELDQKMREAETDPHEGKRKVESLWPIFRIHHQKTRYI 60
Query: 26 ------QKEISMELYEFCLDQGYAVRNLIAKGKQPGYERLCCLRCMQPHDHNF 72
+K IS ELY++C+ +GYA +NLIAK K+ GYE LCCLRC+Q D NF
Sbjct: 61 FDLFYKRKAISRELYDYCIREGYADKNLIAKWKKQGYENLCCLRCIQTRDTNF 113
>sp|Q962X9|BUD31_BRABE Protein BUD31 homolog OS=Branchiostoma belcheri PE=2 SV=1
Length = 144
Score = 79.0 bits (193), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 48/113 (42%), Positives = 56/113 (49%), Gaps = 41/113 (36%)
Query: 1 MPKVKTNRVQNPEGWELIEPTLREL----------------------------------- 25
MPKV+ +R PEGWELIEPTL EL
Sbjct: 1 MPKVRRSRKPPPEGWELIEPTLDELDQKMREAETEPHEGKRKVEALWPIFKIHHQKSRYI 60
Query: 26 ------QKEISMELYEFCLDQGYAVRNLIAKGKQPGYERLCCLRCMQPHDHNF 72
+K IS ELYE+CL +G A +NLIAK K+ GYE LCCLRC+Q D NF
Sbjct: 61 FDLFYRRKAISRELYEYCLKEGIADKNLIAKWKKQGYENLCCLRCIQTRDTNF 113
>sp|Q567Z7|BUD31_DANRE Protein BUD31 homolog OS=Danio rerio GN=bud31 PE=2 SV=1
Length = 144
Score = 77.8 bits (190), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 46/113 (40%), Positives = 56/113 (49%), Gaps = 41/113 (36%)
Query: 1 MPKVKTNRVQNPEGWELIEPTLREL----------------------------------- 25
MPKVK +R P+GWEL+EPTL EL
Sbjct: 1 MPKVKRSRKPPPDGWELVEPTLDELDQKMREAETEPHEGKRKVESLWPIFRLHHQRSRYI 60
Query: 26 ------QKEISMELYEFCLDQGYAVRNLIAKGKQPGYERLCCLRCMQPHDHNF 72
+K IS ELY++C+ GYA +NLIAK K+ GYE LCCLRC+Q D NF
Sbjct: 61 FDLFYKRKAISRELYKYCIRGGYADKNLIAKWKKQGYENLCCLRCIQTRDTNF 113
>sp|O74772|CWF14_SCHPO Pre-mRNA-splicing factor cwf14 OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=cwf14 PE=1 SV=1
Length = 146
Score = 63.2 bits (152), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 40/113 (35%), Positives = 54/113 (47%), Gaps = 41/113 (36%)
Query: 1 MPKVKTNRVQNP-EGWELIEPTLRELQ--------------------------------- 26
MP+++T+R + P +G++ IEPTL E Q
Sbjct: 1 MPRLRTSRTKRPPDGFDEIEPTLIEFQDRMRQIENTMGKGTKTEMLAPIFQLHHQRSRYI 60
Query: 27 -------KEISMELYEFCLDQGYAVRNLIAKGKQPGYERLCCLRCMQPHDHNF 72
+ IS ELY + L Q YA NLIAK K+PGYE+LCCLRC+Q + F
Sbjct: 61 YDLYYKREAISTELYNWLLKQNYADGNLIAKWKKPGYEKLCCLRCIQTAESKF 113
>sp|P34313|BUD31_CAEEL Protein BUD31 homolog OS=Caenorhabditis elegans GN=C07A9.2 PE=2
SV=1
Length = 147
Score = 62.4 bits (150), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 38/111 (34%), Positives = 48/111 (43%), Gaps = 41/111 (36%)
Query: 3 KVKTNRVQNPEGWELIEPTLRELQK----------------------------------- 27
K++ R PEGW+LIEPTL + +
Sbjct: 6 KLRRVRKSPPEGWDLIEPTLEQFEAKMREAETEPHEGKRKTEINWPIFRIHHQRSRYVYD 65
Query: 28 ------EISMELYEFCLDQGYAVRNLIAKGKQPGYERLCCLRCMQPHDHNF 72
EIS ELYEFCL +A LIAK K+ GYE LCC++C+ D NF
Sbjct: 66 MYYKKAEISRELYEFCLTAKFADAALIAKWKKQGYENLCCVKCVNTRDSNF 116
>sp|P25337|BUD31_YEAST Pre-mRNA-splicing factor BUD31 OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=BUD31 PE=1 SV=1
Length = 157
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 34/115 (29%), Positives = 54/115 (46%), Gaps = 44/115 (38%)
Query: 1 MPKVKTNRVQ-NPEGWELIEPTLRELQ--------------------------------- 26
MP++KT R + P+G+E I+PTL + +
Sbjct: 1 MPRIKTRRSKPAPDGFEKIKPTLTDFEIQLRDAQKDKSSKLAAKSNEQLWEIMQLHHQRS 60
Query: 27 ----------KEISMELYEFCLDQGYAVRNLIAKGKQPGYERLCCLRCMQPHDHN 71
K IS +LY++ + + YA + LIAK ++ GYE+LCCLRC+Q ++ N
Sbjct: 61 RYIYTLYYKRKAISKDLYDWLIKEKYADKLLIAKWRKTGYEKLCCLRCIQKNETN 115
>sp|Q5RDX1|Z585A_PONAB Zinc finger protein 585A OS=Pongo abelii GN=ZNF585A PE=2 SV=1
Length = 737
Score = 30.0 bits (66), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 14/46 (30%), Positives = 25/46 (54%), Gaps = 4/46 (8%)
Query: 13 EGWELIEPTLRELQKEISMELYEFCLDQGYAVRN----LIAKGKQP 54
E W ++P+ R L +++ +E Y L GY V ++ +GK+P
Sbjct: 7 EEWRHLDPSQRNLYRDVMLETYSHLLSVGYQVPEAEVVMLEQGKEP 52
>sp|Q9P2J8|ZN624_HUMAN Zinc finger protein 624 OS=Homo sapiens GN=ZNF624 PE=2 SV=3
Length = 865
Score = 30.0 bits (66), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 19/32 (59%)
Query: 13 EGWELIEPTLRELQKEISMELYEFCLDQGYAV 44
E W L++PT R L K++ +E Y + G AV
Sbjct: 66 EEWRLMDPTQRNLHKDVMLENYRNLVSLGLAV 97
>sp|Q6P3V2|Z585A_HUMAN Zinc finger protein 585A OS=Homo sapiens GN=ZNF585A PE=2 SV=2
Length = 769
Score = 30.0 bits (66), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 14/46 (30%), Positives = 25/46 (54%), Gaps = 4/46 (8%)
Query: 13 EGWELIEPTLRELQKEISMELYEFCLDQGYAVRN----LIAKGKQP 54
E W ++P+ R L +++ +E Y L GY V ++ +GK+P
Sbjct: 39 EEWRHLDPSQRNLYRDVMLETYSHLLSVGYQVPEAEVVMLEQGKEP 84
>sp|P17030|ZNF25_HUMAN Zinc finger protein 25 OS=Homo sapiens GN=ZNF25 PE=2 SV=2
Length = 456
Score = 30.0 bits (66), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 25/47 (53%), Gaps = 5/47 (10%)
Query: 13 EGWELIEPTLRELQKEISMELYEFCLDQGYAVR--NLIAK---GKQP 54
E W+L+ P R L K++ +E Y + GY V N + K GK+P
Sbjct: 20 EEWKLLTPAQRTLYKDVMLENYSHLVSVGYHVNKPNAVFKLKQGKEP 66
>sp|B5ETN1|HUTH_VIBFM Histidine ammonia-lyase OS=Vibrio fischeri (strain MJ11) GN=hutH
PE=3 SV=1
Length = 510
Score = 29.6 bits (65), Expect = 5.6, Method: Composition-based stats.
Identities = 13/45 (28%), Positives = 20/45 (44%)
Query: 38 LDQGYAVRNLIAKGKQPGYERLCCLRCMQPHDHNFQMHECAECLR 82
+D A R+L+A+ + G CC R P+ Q CL+
Sbjct: 251 MDAALAYRHLLAQSSEIGLSHQCCERVQDPYSLRCQPQVMGACLQ 295
>sp|O94892|ZN432_HUMAN Zinc finger protein 432 OS=Homo sapiens GN=ZNF432 PE=1 SV=1
Length = 652
Score = 29.6 bits (65), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 11/32 (34%), Positives = 20/32 (62%)
Query: 13 EGWELIEPTLRELQKEISMELYEFCLDQGYAV 44
E W+L+ P ++L +++ +E+Y L GY V
Sbjct: 20 EEWQLLGPFQKDLYRDVMLEIYSNLLSMGYQV 51
>sp|A6ZRW6|MASY_YEAS7 Malate synthase 1, glyoxysomal OS=Saccharomyces cerevisiae (strain
YJM789) GN=MLS1 PE=3 SV=1
Length = 554
Score = 28.9 bits (63), Expect = 8.6, Method: Composition-based stats.
Identities = 14/43 (32%), Positives = 22/43 (51%)
Query: 12 PEGWELIEPTLRELQKEISMELYEFCLDQGYAVRNLIAKGKQP 54
P GW ++E L + IS +++F L + + LI GK P
Sbjct: 178 PRGWHMVEKHLYVDDEPISASIFDFGLYFYHNAKELIKLGKGP 220
>sp|P30952|MASY_YEAST Malate synthase 1, glyoxysomal OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=MLS1 PE=1 SV=1
Length = 554
Score = 28.9 bits (63), Expect = 8.7, Method: Composition-based stats.
Identities = 14/43 (32%), Positives = 22/43 (51%)
Query: 12 PEGWELIEPTLRELQKEISMELYEFCLDQGYAVRNLIAKGKQP 54
P GW ++E L + IS +++F L + + LI GK P
Sbjct: 178 PRGWHMVEKHLYVDDEPISASIFDFGLYFYHNAKELIKLGKGP 220
>sp|Q8NDQ6|ZN540_HUMAN Zinc finger protein 540 OS=Homo sapiens GN=ZNF540 PE=1 SV=1
Length = 660
Score = 28.9 bits (63), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 14/45 (31%), Positives = 26/45 (57%), Gaps = 5/45 (11%)
Query: 15 WELIEPTLRELQKEISMELYEFCLDQGYA-----VRNLIAKGKQP 54
WE ++ T R+L +++ +E Y + GY+ V L+ +GK+P
Sbjct: 20 WECLDTTQRKLYRDVMLENYNNLVSLGYSGSKPDVITLLEQGKEP 64
>sp|Q5R5S6|ZN540_PONAB Zinc finger protein 540 OS=Pongo abelii GN=ZNF540 PE=2 SV=1
Length = 660
Score = 28.9 bits (63), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 14/45 (31%), Positives = 26/45 (57%), Gaps = 5/45 (11%)
Query: 15 WELIEPTLRELQKEISMELYEFCLDQGYA-----VRNLIAKGKQP 54
WE ++ T R+L +++ +E Y + GY+ V L+ +GK+P
Sbjct: 20 WECLDTTQRKLYRDVMLENYNNLVSLGYSGSKPDVITLLEQGKEP 64
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.323 0.138 0.451
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 32,272,556
Number of Sequences: 539616
Number of extensions: 1057255
Number of successful extensions: 3103
Number of sequences better than 100.0: 44
Number of HSP's better than 100.0 without gapping: 28
Number of HSP's successfully gapped in prelim test: 16
Number of HSP's that attempted gapping in prelim test: 3063
Number of HSP's gapped (non-prelim): 56
length of query: 83
length of database: 191,569,459
effective HSP length: 54
effective length of query: 29
effective length of database: 162,430,195
effective search space: 4710475655
effective search space used: 4710475655
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 55 (25.8 bits)