Query 040196
Match_columns 83
No_of_seqs 106 out of 141
Neff 3.3
Searched_HMMs 29240
Date Mon Mar 25 09:18:55 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040196.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/040196hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3lys_A Prophage PI2 protein 01 75.9 2.2 7.6E-05 25.3 2.8 29 30-58 79-107 (112)
2 3nrw_A Phage integrase/site-sp 68.7 2 6.8E-05 26.0 1.3 24 31-54 84-107 (117)
3 2i5u_A DNAD domain protein; st 67.8 6.6 0.00023 23.8 3.6 29 30-59 41-78 (83)
4 1ou8_A Stringent starvation pr 66.3 2.4 8.1E-05 28.8 1.5 15 29-43 12-26 (111)
5 1yfn_A Stringent starvation pr 65.3 2.5 8.7E-05 28.9 1.5 16 28-43 12-27 (118)
6 3h92_A Uncharacterized ATP-bin 62.0 2.7 9.4E-05 27.7 1.1 28 15-42 33-67 (92)
7 1ou9_A Stringent starvation pr 61.6 3.2 0.00011 28.8 1.5 15 29-43 12-26 (129)
8 1jmt_B Splicing factor U2AF 65 55.0 2.5 8.4E-05 22.6 -0.1 12 9-20 9-20 (28)
9 2khq_A Integrase; all-alpha, s 50.1 21 0.00072 20.3 3.5 23 31-53 76-98 (110)
10 2kj5_A Phage integrase; GFT PS 47.1 26 0.0009 20.1 3.6 25 31-55 80-104 (116)
11 2kkp_A Phage integrase; SAM-li 46.7 26 0.00089 20.0 3.6 24 31-54 83-106 (117)
12 3bjo_A Uncharacterized ATP-bin 44.0 5.4 0.00019 26.8 0.3 28 15-42 44-78 (103)
13 2oxo_A Integrase; DNA-binding 43.1 18 0.00063 19.6 2.4 24 31-54 75-98 (103)
14 2kiw_A INT protein; alpha, str 42.0 24 0.00081 20.1 2.9 25 31-55 73-97 (111)
15 2key_A Putative phage integras 40.2 11 0.00038 21.7 1.2 24 31-54 83-106 (112)
16 2kob_A Uncharacterized protein 40.1 12 0.00041 21.2 1.3 22 31-52 74-95 (108)
17 1zbd_B Rabphilin-3A; G protein 38.6 46 0.0016 22.3 4.3 62 11-81 11-79 (134)
18 2kd1_A DNA integration/recombi 37.5 31 0.0011 19.8 2.9 25 31-55 81-105 (118)
19 1yuz_A Nigerythrin; rubrythrin 36.9 27 0.00092 24.5 3.0 36 18-58 26-61 (202)
20 2kj9_A Integrase; DNA_BRE_C su 36.7 49 0.0017 19.6 3.8 24 31-54 84-107 (118)
21 2igp_A Retinoblastoma-associat 35.6 29 0.001 22.8 2.8 21 24-44 14-34 (120)
22 2kkv_A Integrase; protein stru 34.4 42 0.0014 19.6 3.2 23 31-53 80-102 (121)
23 2kj8_A Putative prophage CPS-5 28.8 52 0.0018 19.2 2.9 21 31-51 79-99 (118)
24 1v31_A Hypothetical protein RA 28.5 21 0.00072 22.4 1.1 34 12-46 9-49 (93)
25 3iwh_A Rhodanese-like domain p 28.1 15 0.00051 22.6 0.4 28 30-57 69-99 (103)
26 2lmz_A Conotoxin IM17A; novel, 27.8 25 0.00085 20.2 1.3 13 31-43 9-21 (42)
27 2kpz_A E3 ubiquitin-protein li 27.5 15 0.00051 20.5 0.3 17 1-17 3-19 (49)
28 3vej_A Ubiquitin-like protein 27.4 26 0.00089 20.0 1.3 11 15-25 8-18 (41)
29 2aqe_A Transcriptional adaptor 26.4 25 0.00084 22.1 1.2 14 32-45 76-89 (90)
30 3eof_A Putative oxidoreductase 24.4 49 0.0017 23.2 2.6 19 26-44 230-248 (248)
31 2zc2_A DNAD-like replication p 24.2 26 0.00088 20.5 0.9 42 16-58 24-72 (78)
32 1grj_A GREA protein; transcrip 24.1 42 0.0014 22.6 2.1 23 11-33 7-33 (158)
33 1jig_A DLP-2; dodecamer, four- 24.0 1.3E+02 0.0043 18.7 4.3 40 9-49 82-128 (146)
34 2p4v_A Transcription elongatio 23.2 38 0.0013 22.9 1.8 23 11-33 7-33 (158)
35 1x4q_A U4/U6 small nuclear rib 23.2 82 0.0028 19.8 3.2 28 19-49 12-39 (92)
36 2elj_A Transcriptional adapter 22.6 39 0.0013 21.1 1.6 12 32-43 77-88 (88)
37 1m46_B IQ4, IQ4 motif from MYO 22.5 92 0.0031 16.1 3.2 21 20-40 4-24 (26)
38 2khu_A Immunoglobulin G-bindin 21.6 18 0.00061 24.5 -0.2 14 43-56 80-93 (108)
39 1wjt_A Transcription elongatio 21.5 19 0.00065 23.3 -0.1 12 43-54 74-85 (103)
40 2cuj_A Transcriptional adaptor 21.5 33 0.0011 22.4 1.1 14 32-45 94-107 (108)
41 1n1q_A DPS protein; four-helix 21.2 1.5E+02 0.0053 18.5 4.3 40 9-49 85-131 (149)
42 3i5p_A Nucleoporin NUP170; hel 21.2 53 0.0018 26.6 2.4 22 26-47 177-198 (525)
43 2nsz_A Programmed cell death p 20.8 1.6E+02 0.0054 18.9 4.3 38 13-50 82-125 (129)
44 1uhr_A SWI/SNF related, matrix 20.5 30 0.001 21.7 0.7 33 12-45 9-48 (93)
45 2eqf_A Tumor necrosis factor, 20.1 45 0.0015 19.5 1.4 17 62-78 10-26 (46)
No 1
>3lys_A Prophage PI2 protein 01, integrase; helical N-terminal domain, structural genomics, PSI-2, protein structure initiative; 2.80A {Lactococcus lactis}
Probab=75.93 E-value=2.2 Score=25.31 Aligned_cols=29 Identities=10% Similarity=0.235 Sum_probs=25.6
Q ss_pred HHHHHHHHHhhchhhHHHHHccCccchhh
Q 040196 30 SMELYEFCLDQGYAVRNLIAKGKQPGYER 58 (83)
Q Consensus 30 SreLYe~~l~~~yaD~~LIaKWKK~GYE~ 58 (83)
=+.+++|.+++|+++.|-++.-+.+|-|.
T Consensus 79 l~~i~~~Av~~g~i~~NP~~~v~~~~~~~ 107 (112)
T 3lys_A 79 VRASIQCLIEEGRLQKDFTTRAVVKGLEH 107 (112)
T ss_dssp HHHHHHHHHHTTSCSSCTTSSTTCCCCCC
T ss_pred HHHHHHHHHHCCCcccCccccceeccccc
Confidence 35799999999999999999999999873
No 2
>3nrw_A Phage integrase/site-specific recombinase; alpha-helical domain, structural genomics, PSI-2, protein ST initiative; 1.70A {Haloarcula marismortui}
Probab=68.65 E-value=2 Score=26.00 Aligned_cols=24 Identities=17% Similarity=0.133 Sum_probs=20.5
Q ss_pred HHHHHHHHhhchhhHHHHHccCcc
Q 040196 31 MELYEFCLDQGYAVRNLIAKGKQP 54 (83)
Q Consensus 31 reLYe~~l~~~yaD~~LIaKWKK~ 54 (83)
+-+|+|++++|+++.|..+.-+.|
T Consensus 84 r~f~~~l~~~g~i~~nP~~~v~~p 107 (117)
T 3nrw_A 84 KNWLEYLARIDVVDEDLPEKVHVP 107 (117)
T ss_dssp HHHHHHHHHTTSSCTTSGGGCCCC
T ss_pred HHHHHHHHHcCCcccCHHHHccCC
Confidence 469999999999999988876655
No 3
>2i5u_A DNAD domain protein; structural genomics, PSI-2, protein STR initiative, midwest center for structural genomics, MCSG, U function; HET: MSE; 1.50A {Enterococcus faecalis} SCOP: a.275.1.1
Probab=67.84 E-value=6.6 Score=23.82 Aligned_cols=29 Identities=24% Similarity=0.385 Sum_probs=21.2
Q ss_pred HHHH----HHHHHhhc-----hhhHHHHHccCccchhhh
Q 040196 30 SMEL----YEFCLDQG-----YAVRNLIAKGKQPGYERL 59 (83)
Q Consensus 30 SreL----Ye~~l~~~-----yaD~~LIaKWKK~GYE~L 59 (83)
|.|| ++.++.++ |+|+=|.. |+++|...+
T Consensus 41 ~~elI~~A~~~av~~~~~~~~Yi~~IL~~-W~~~gi~T~ 78 (83)
T 2i5u_A 41 AEQLIVKAIEIAIDANARNYNYINAILKD-WEQRGFKSV 78 (83)
T ss_dssp HHHHHHHHHHHHHHHTCCSHHHHHHHHHH-HHHHTCCC-
T ss_pred CHHHHHHHHHHHHHcCCCCHHHHHHHHHH-HHHcCCCCH
Confidence 5555 78887665 88888766 999997643
No 4
>1ou8_A Stringent starvation protein B homolog; peptide-binding pocket, protein-peptide complex, homodimer, transport protein; 1.60A {Haemophilus influenzae} SCOP: b.136.1.1 PDB: 1zsz_A 1twb_A 1zsz_B
Probab=66.32 E-value=2.4 Score=28.77 Aligned_cols=15 Identities=13% Similarity=0.554 Sum_probs=12.7
Q ss_pred HHHHHHHHHHhhchh
Q 040196 29 ISMELYEFCLDQGYA 43 (83)
Q Consensus 29 ISreLYe~~l~~~ya 43 (83)
+=|.+||||++|++-
T Consensus 12 LiRA~yeWi~DN~~T 26 (111)
T 1ou8_A 12 LLRAYYDWLVDNSFT 26 (111)
T ss_dssp HHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHhCCCc
Confidence 567899999999973
No 5
>1yfn_A Stringent starvation protein B; protein-peptide complex, SSPB, RSEA, protein binding; 1.80A {Escherichia coli} SCOP: b.136.1.1 PDB: 1ox9_A 1ox8_A
Probab=65.34 E-value=2.5 Score=28.90 Aligned_cols=16 Identities=25% Similarity=0.434 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHhhchh
Q 040196 28 EISMELYEFCLDQGYA 43 (83)
Q Consensus 28 ~ISreLYe~~l~~~ya 43 (83)
-+=|.+||||+++++-
T Consensus 12 YLiRA~yeWi~DN~~T 27 (118)
T 1yfn_A 12 YLLRAFYEWLLDNQLT 27 (118)
T ss_dssp HHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHcCCCc
Confidence 3567899999999973
No 6
>3h92_A Uncharacterized ATP-binding protein mjecl15; protein with unknown function, structural genomics, PSI; HET: PG6; 2.20A {Methanocaldococcus jannaschii}
Probab=62.02 E-value=2.7 Score=27.69 Aligned_cols=28 Identities=11% Similarity=0.301 Sum_probs=22.3
Q ss_pred hhhhHHHHHHH-------HHHHHHHHHHHHHhhch
Q 040196 15 WELIEPTLREL-------QKEISMELYEFCLDQGY 42 (83)
Q Consensus 15 ~e~IeptL~e~-------~k~ISreLYe~~l~~~y 42 (83)
|+.|-.+|..| ...|++++|.|+++++.
T Consensus 33 ~~~ii~aLklFK~~yeI~~~~I~~~i~~~LIk~NI 67 (92)
T 3h92_A 33 YDEVLEALKLFKDNYELPKSKIKRKIRIFLIKENI 67 (92)
T ss_dssp HHHHHHHHHHHHHCSSEEGGGSCHHHHHHHHHTTS
T ss_pred HHHHHHHHHHhccccccchhhccHHHHHHHHHhce
Confidence 56677777777 55699999999999875
No 7
>1ou9_A Stringent starvation protein B homolog; SSRA peptide-binding protein, homodimer, transport protein; 1.80A {Haemophilus influenzae} SCOP: b.136.1.1 PDB: 1oul_A 1zsz_C
Probab=61.58 E-value=3.2 Score=28.83 Aligned_cols=15 Identities=13% Similarity=0.554 Sum_probs=12.6
Q ss_pred HHHHHHHHHHhhchh
Q 040196 29 ISMELYEFCLDQGYA 43 (83)
Q Consensus 29 ISreLYe~~l~~~ya 43 (83)
+=|.+||||++|++-
T Consensus 12 LiRA~yeWi~DN~~T 26 (129)
T 1ou9_A 12 LLRAYYDWLVDNSFT 26 (129)
T ss_dssp HHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHhCCCc
Confidence 557899999999973
No 8
>1jmt_B Splicing factor U2AF 65 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens}
Probab=54.97 E-value=2.5 Score=22.60 Aligned_cols=12 Identities=42% Similarity=0.700 Sum_probs=10.2
Q ss_pred CCCCCchhhhHH
Q 040196 9 VQNPEGWELIEP 20 (83)
Q Consensus 9 k~pPeG~e~Iep 20 (83)
-.||+|||.|-|
T Consensus 9 DvpP~GyE~vtp 20 (28)
T 1jmt_B 9 DVPPPGFEHITP 20 (28)
T ss_dssp TCCCTTCTTSCH
T ss_pred CCCCCCccccCH
Confidence 679999998866
No 9
>2khq_A Integrase; all-alpha, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; NMR {Staphylococcus saprophyticus subsp}
Probab=50.08 E-value=21 Score=20.26 Aligned_cols=23 Identities=17% Similarity=0.421 Sum_probs=18.5
Q ss_pred HHHHHHHHhhchhhHHHHHccCc
Q 040196 31 MELYEFCLDQGYAVRNLIAKGKQ 53 (83)
Q Consensus 31 reLYe~~l~~~yaD~~LIaKWKK 53 (83)
+.+|+|.+++|+++.|-+..-+.
T Consensus 76 ~~~~~~a~~~~~i~~NP~~~v~~ 98 (110)
T 2khq_A 76 RNAFDDAIHEGYVIKNPTYKAEL 98 (110)
T ss_dssp HHHHHHHHHTTCCCCCGGGGCCC
T ss_pred HHHHHHHHHCCCcccCccccccc
Confidence 46899999999999887765543
No 10
>2kj5_A Phage integrase; GFT PSI-2, NESG, structural genomics, structure initiative; NMR {Nitrosospira multiformis atcc 25196}
Probab=47.05 E-value=26 Score=20.11 Aligned_cols=25 Identities=8% Similarity=0.107 Sum_probs=20.2
Q ss_pred HHHHHHHHhhchhhHHHHHccCccc
Q 040196 31 MELYEFCLDQGYAVRNLIAKGKQPG 55 (83)
Q Consensus 31 reLYe~~l~~~yaD~~LIaKWKK~G 55 (83)
+.+|+|.+++|+++.|-+..-+.+.
T Consensus 80 ~~~~~~A~~~~~i~~NP~~~i~~p~ 104 (116)
T 2kj5_A 80 KRMFNYAIKRHIIEYNPAAAFDPGD 104 (116)
T ss_dssp HHHHHHHHHTTSCSSCGGGGSCCCC
T ss_pred HHHHHHHHHcCccccCchhhCCCCC
Confidence 4689999999999988877666553
No 11
>2kkp_A Phage integrase; SAM-like domain, alpha-helical bundle, structural genomics, PSI-2, protein structure initiative; NMR {Moorella thermoacetica atcc 39073}
Probab=46.71 E-value=26 Score=20.00 Aligned_cols=24 Identities=21% Similarity=0.279 Sum_probs=18.7
Q ss_pred HHHHHHHHhhchhhHHHHHccCcc
Q 040196 31 MELYEFCLDQGYAVRNLIAKGKQP 54 (83)
Q Consensus 31 reLYe~~l~~~yaD~~LIaKWKK~ 54 (83)
+.+|+|++++|+++.|-...-+.+
T Consensus 83 ~~~~~~A~~~~~i~~nP~~~i~~~ 106 (117)
T 2kkp_A 83 HEAMSQARESGLLLQNPTEAAKPP 106 (117)
T ss_dssp HHHHHHHHTTTSCSSCGGGGSCCC
T ss_pred HHHHHHHHHCCCcccCccccCCCC
Confidence 468999999999988877655543
No 12
>3bjo_A Uncharacterized ATP-binding protein MJ1010; APC87992.1, structur genomics, PSI-2; 2.05A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID}
Probab=44.00 E-value=5.4 Score=26.81 Aligned_cols=28 Identities=18% Similarity=0.252 Sum_probs=21.9
Q ss_pred hhhhHHHHHHH-------HHHHHHHHHHHHHhhch
Q 040196 15 WELIEPTLREL-------QKEISMELYEFCLDQGY 42 (83)
Q Consensus 15 ~e~IeptL~e~-------~k~ISreLYe~~l~~~y 42 (83)
++.|-.+|..| ...|++++|.||++++.
T Consensus 44 ~e~Ii~aLklFK~~yeI~~~~I~~~i~~~LIk~NI 78 (103)
T 3bjo_A 44 KEDIINALKLFKGKYEIEVDKIPKAVYVYLVKKNI 78 (103)
T ss_dssp HHHHHHHHHGGGSCSSEEGGGSCHHHHHHHHHTTS
T ss_pred HHHHHHHHHHhhhcceechhhcCHHHHHHHHHhcc
Confidence 56666667777 55699999999999875
No 13
>2oxo_A Integrase; DNA-binding protein, four-helix bundle, DNA binding protein; 2.00A {Unidentified phage}
Probab=43.09 E-value=18 Score=19.60 Aligned_cols=24 Identities=13% Similarity=0.259 Sum_probs=16.0
Q ss_pred HHHHHHHHhhchhhHHHHHccCcc
Q 040196 31 MELYEFCLDQGYAVRNLIAKGKQP 54 (83)
Q Consensus 31 reLYe~~l~~~yaD~~LIaKWKK~ 54 (83)
+.+|+|.+++|+++.|-...-+.+
T Consensus 75 ~~~~~~a~~~~~i~~nP~~~v~~~ 98 (103)
T 2oxo_A 75 SDAFREAIAEGHITTNHVAATRAA 98 (103)
T ss_dssp HHHHHHHHHTTSCSSCTTC-----
T ss_pred HHHHHHHHHcCCCCCChHhhcCCC
Confidence 468999999999988766544433
No 14
>2kiw_A INT protein; alpha, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; NMR {Staphylococcus haemolyticus JCSC1435}
Probab=41.97 E-value=24 Score=20.13 Aligned_cols=25 Identities=12% Similarity=0.141 Sum_probs=20.0
Q ss_pred HHHHHHHHhhchhhHHHHHccCccc
Q 040196 31 MELYEFCLDQGYAVRNLIAKGKQPG 55 (83)
Q Consensus 31 reLYe~~l~~~yaD~~LIaKWKK~G 55 (83)
+.+|+|.+++|+++.|-+..-+.+.
T Consensus 73 r~~~~~A~~~~~i~~nP~~~i~~pk 97 (111)
T 2kiw_A 73 NMIFKYAYDTRLIKAMPSEGIKRPK 97 (111)
T ss_dssp HHHHHHHHHTTSCSCCTTTTCCCCS
T ss_pred HHHHHHHHHhCChhhCccccCCCCC
Confidence 4689999999999988777665554
No 15
>2key_A Putative phage integrase; protein structure, PSI, NESG, structural genomics, unknown F protein structure initiative; NMR {Bacteroides fragilis}
Probab=40.23 E-value=11 Score=21.73 Aligned_cols=24 Identities=8% Similarity=0.040 Sum_probs=18.7
Q ss_pred HHHHHHHHhhchhhHHHHHccCcc
Q 040196 31 MELYEFCLDQGYAVRNLIAKGKQP 54 (83)
Q Consensus 31 reLYe~~l~~~yaD~~LIaKWKK~ 54 (83)
+-+|+|++++|+++.|-...-+.|
T Consensus 83 r~~~~~a~~~~~i~~nP~~~v~~p 106 (112)
T 2key_A 83 KIYVSAAIKKGYMENDPFKDFGLE 106 (112)
T ss_dssp HHHHHHHHHTTSCCSCHHHHHTCC
T ss_pred HHHHHHHHHCCCcccCCcccCCCc
Confidence 468999999999998877655543
No 16
>2kob_A Uncharacterized protein; alpha beta, structural genomics, PSI-2, protein structure initiative; NMR {Clostridium leptum dsm 753}
Probab=40.06 E-value=12 Score=21.20 Aligned_cols=22 Identities=5% Similarity=0.077 Sum_probs=17.7
Q ss_pred HHHHHHHHhhchhhHHHHHccC
Q 040196 31 MELYEFCLDQGYAVRNLIAKGK 52 (83)
Q Consensus 31 reLYe~~l~~~yaD~~LIaKWK 52 (83)
+.+|+|.+++|+++.|-+..-+
T Consensus 74 ~~~~~~A~~~~~i~~NP~~~v~ 95 (108)
T 2kob_A 74 SQIFRLAIENRAIDFNPADYVR 95 (108)
T ss_dssp HHHHHHHHHTTSSSSCGGGTCC
T ss_pred HHHHHHHHHcCCcccCccccCc
Confidence 4689999999999988776443
No 17
>1zbd_B Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: g.50.1.1
Probab=38.65 E-value=46 Score=22.28 Aligned_cols=62 Identities=16% Similarity=0.183 Sum_probs=37.9
Q ss_pred CCCchhhhHHHHHHH------HHHHHHHHHHHHHhhchhhHHHHHccCccchhhhhhccccccCCCCcc-hhhhhhhh
Q 040196 11 NPEGWELIEPTLREL------QKEISMELYEFCLDQGYAVRNLIAKGKQPGYERLCCLRCMQPHDHNFQ-MHECAECL 81 (83)
Q Consensus 11 pPeG~e~IeptL~e~------~k~ISreLYe~~l~~~yaD~~LIaKWKK~GYE~LCCl~CIq~~d~nfg-t~~c~~~~ 81 (83)
.++-=+.|.++|..- .++.-+.|-+-+.+ -+|+-.|+..-+|.+|-++-+.-++ ..+|..|.
T Consensus 11 teeE~~~Il~Vl~Rd~~l~~~E~~ri~kL~~~l~~---------~k~~~~~~~~~~C~~C~~~~g~l~~~g~~C~~C~ 79 (134)
T 1zbd_B 11 TDEEKEIINRVIARAEKMETMEQERIGRLVDRLET---------MRKNVAGDGVNRCILCGEQLGMLGSASVVCEDCK 79 (134)
T ss_dssp CSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHTCCSCSSSBCSSSCCBCSTTSCCEEECTTTC
T ss_pred CHHHHHHHHHHHhhHHHHHHhHHHHHHHHHHHHHH---------HHHHhccCCCccccccCCCcccccCCCCCCCCCC
Confidence 355557787777655 22233334333332 3466668899999999998864333 36777664
No 18
>2kd1_A DNA integration/recombination/invertion protein; protein structure initiative, structural genomics, unknown function, PSI-2; HET: DNA; NMR {Bacillus cereus atcc 14579}
Probab=37.49 E-value=31 Score=19.83 Aligned_cols=25 Identities=28% Similarity=0.341 Sum_probs=19.7
Q ss_pred HHHHHHHHhhchhhHHHHHccCccc
Q 040196 31 MELYEFCLDQGYAVRNLIAKGKQPG 55 (83)
Q Consensus 31 reLYe~~l~~~yaD~~LIaKWKK~G 55 (83)
+.+|+|++++|+++.|-+..-+.+.
T Consensus 81 ~~~~~~a~~~~~i~~nP~~~i~~~k 105 (118)
T 2kd1_A 81 RNSLEHAIDLELITKNVAAKTKLPK 105 (118)
T ss_dssp HHHHHHHHHTTSCSSCTTTTCCCCS
T ss_pred HHHHHHHHHcCCcccCccccccCCC
Confidence 5689999999999988776665543
No 19
>1yuz_A Nigerythrin; rubrythrin, rubredoxin, hemerythrin, electron transfer, DIIR center, oxidoreductase; 1.40A {Desulfovibrio vulgaris subsp} SCOP: a.25.1.1 g.41.5.1 PDB: 1yv1_A 1yux_A
Probab=36.87 E-value=27 Score=24.55 Aligned_cols=36 Identities=28% Similarity=0.390 Sum_probs=23.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHccCccchhh
Q 040196 18 IEPTLRELQKEISMELYEFCLDQGYAVRNLIAKGKQPGYER 58 (83)
Q Consensus 18 IeptL~e~~k~ISreLYe~~l~~~yaD~~LIaKWKK~GYE~ 58 (83)
|..|.+.|+.+|.-|+|++-. |.--.-+| ++.||..
T Consensus 26 ~g~T~~nL~~a~~gE~~a~~~---Y~~~A~~A--~~eG~~~ 61 (202)
T 1yuz_A 26 VGSTLENLKAAIAGETGAHAK---YTAFAKAA--REQGYEQ 61 (202)
T ss_dssp CCCHHHHHHHHHHHHHHHHHH---HHHHHHHH--HHTTCHH
T ss_pred chHHHHHHHHHHHHHHHHHHH---HHHHHHHH--HHCCcHH
Confidence 445899999999999999722 53322222 5666654
No 20
>2kj9_A Integrase; DNA_BRE_C superfamily, INTB, PSI-2, structural genomics, protein structure initiative; NMR {Pectobacterium atrosepticum}
Probab=36.70 E-value=49 Score=19.59 Aligned_cols=24 Identities=8% Similarity=0.019 Sum_probs=19.6
Q ss_pred HHHHHHHHhhchhhHHHHHccCcc
Q 040196 31 MELYEFCLDQGYAVRNLIAKGKQP 54 (83)
Q Consensus 31 reLYe~~l~~~yaD~~LIaKWKK~ 54 (83)
+.+|+|.++.|+++.|-++.-+.+
T Consensus 84 ~~if~~Av~~g~i~~NP~~~v~~~ 107 (118)
T 2kj9_A 84 TAIMRYAVQQKMIRFNPAYDLEGA 107 (118)
T ss_dssp HHHHHHHHHTTSSSSCHHHHCCSC
T ss_pred HHHHHHHHHcCCcccCchHHHHHH
Confidence 579999999999999887766544
No 21
>2igp_A Retinoblastoma-associated protein HEC; calponin homology (CH) domain, alpha helices, cell cycle; 1.80A {Homo sapiens}
Probab=35.61 E-value=29 Score=22.80 Aligned_cols=21 Identities=29% Similarity=0.476 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHhhchhh
Q 040196 24 ELQKEISMELYEFCLDQGYAV 44 (83)
Q Consensus 24 e~~k~ISreLYe~~l~~~yaD 44 (83)
.|+.++.++|++||...||-+
T Consensus 14 ~~q~~~~~~i~~fL~~~~~~~ 34 (120)
T 2igp_A 14 AFIQQCIRQLCEFLTENGYAH 34 (120)
T ss_dssp HHHHHHHHHHHHHHHHTTCSS
T ss_pred HHHHHHHHHHHHHHHHcCCCC
Confidence 467889999999999999854
No 22
>2kkv_A Integrase; protein structure, PSI, nesgc, structural genomics, protein initiative, northeast structural genomics consortium; NMR {Salmonella enterica subsp}
Probab=34.42 E-value=42 Score=19.58 Aligned_cols=23 Identities=9% Similarity=0.187 Sum_probs=18.0
Q ss_pred HHHHHHHHhhchhhHHHHHccCc
Q 040196 31 MELYEFCLDQGYAVRNLIAKGKQ 53 (83)
Q Consensus 31 reLYe~~l~~~yaD~~LIaKWKK 53 (83)
+.+|+|.+++|+++.|-+..-++
T Consensus 80 ~~~~~~A~~~~~i~~NP~~~v~~ 102 (121)
T 2kkv_A 80 TAIMRYAVQNDYIDSNPASDMAG 102 (121)
T ss_dssp HHHHHHHHHTTSSCSCSCSSSSC
T ss_pred HHHHHHHHHcCCcccCcHHHHHH
Confidence 57899999999998886654443
No 23
>2kj8_A Putative prophage CPS-53 integrase; INTS, INTC, YFDB, DNA integration, DNA recombination, structural genomics, protein structure initiative; NMR {Escherichia coli k-12}
Probab=28.76 E-value=52 Score=19.20 Aligned_cols=21 Identities=19% Similarity=0.219 Sum_probs=16.3
Q ss_pred HHHHHHHHhhchhhHHHHHcc
Q 040196 31 MELYEFCLDQGYAVRNLIAKG 51 (83)
Q Consensus 31 reLYe~~l~~~yaD~~LIaKW 51 (83)
+.+|+|.+++|+++.|-+..-
T Consensus 79 ~~~~~~Av~~~~i~~NP~~~v 99 (118)
T 2kj8_A 79 GEVFRYAIVTGRAKYNPAPDL 99 (118)
T ss_dssp HHHHHHHHHTTSCSCCSHHHH
T ss_pred HHHHHHHHHcCCcccCcHHHH
Confidence 468999999999887655443
No 24
>1v31_A Hypothetical protein RAFL11-05-P19; SWI/SNF complex subunit, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: a.42.1.1
Probab=28.50 E-value=21 Score=22.42 Aligned_cols=34 Identities=15% Similarity=0.352 Sum_probs=27.1
Q ss_pred CCchhhhHHHHHHH-------HHHHHHHHHHHHHhhchhhHH
Q 040196 12 PEGWELIEPTLREL-------QKEISMELYEFCLDQGYAVRN 46 (83)
Q Consensus 12 PeG~e~IeptL~e~-------~k~ISreLYe~~l~~~yaD~~ 46 (83)
|+-| .+.|.|.+| |-.|-+.|++|.-.+++-|++
T Consensus 9 p~~~-~lS~~La~~lG~~~~sr~evvk~lW~YIK~n~Lqdp~ 49 (93)
T 1v31_A 9 PEKF-KLSTALMDVLGIEVETRPRIIAAIWHYVKARKLQNPN 49 (93)
T ss_dssp CCCE-ECCHHHHHHSCCSEECSHHHHHHHHHHHHHTTCBCSS
T ss_pred CCcc-ccCHHHHHHHCCCccCHHHHHHHHHHHHHHccCcCcc
Confidence 4444 367889999 888889999999999988753
No 25
>3iwh_A Rhodanese-like domain protein; alpha-beta-alpha sandwich, structural genomics, C structural genomics of infectious diseases, csgid; 2.00A {Staphylococcus aureus subsp} PDB: 3mzz_A
Probab=28.12 E-value=15 Score=22.60 Aligned_cols=28 Identities=21% Similarity=0.291 Sum_probs=20.8
Q ss_pred HHHHHHHHHhhchhhHHH---HHccCccchh
Q 040196 30 SMELYEFCLDQGYAVRNL---IAKGKQPGYE 57 (83)
Q Consensus 30 SreLYe~~l~~~yaD~~L---IaKWKK~GYE 57 (83)
|.....+|.+.||-.-+| |.-|+..||+
T Consensus 69 S~~aa~~L~~~G~~~~~l~GG~~~W~~~g~p 99 (103)
T 3iwh_A 69 SAKVVEYLEANGIDAVNVEGGMHAWGDEGLE 99 (103)
T ss_dssp HHHHHHHHHTTTCEEEEETTHHHHHCSSSCB
T ss_pred HHHHHHHHHHcCCCEEEecChHHHHHHCCCc
Confidence 667788899999844333 5669999985
No 26
>2lmz_A Conotoxin IM17A; novel, helix, hairpin; NMR {Conus imperialis}
Probab=27.76 E-value=25 Score=20.17 Aligned_cols=13 Identities=31% Similarity=0.813 Sum_probs=10.5
Q ss_pred HHHHHHHHhhchh
Q 040196 31 MELYEFCLDQGYA 43 (83)
Q Consensus 31 reLYe~~l~~~ya 43 (83)
-|-|.||++|.+.
T Consensus 9 aecyswc~~q~l~ 21 (42)
T 2lmz_A 9 AECYSWCIKQDLS 21 (42)
T ss_dssp HHHHHHHHHTCSC
T ss_pred HHHHHHHHHHhhh
Confidence 4789999998754
No 27
>2kpz_A E3 ubiquitin-protein ligase NEDD4; WW domain, HTLV1, NEDD4, human modular domain, complex, HOST interaction, ligase; NMR {Homo sapiens} PDB: 2kq0_A 2laj_A*
Probab=27.52 E-value=15 Score=20.54 Aligned_cols=17 Identities=29% Similarity=0.593 Sum_probs=6.2
Q ss_pred CCCCCCCCCCCCCchhh
Q 040196 1 MPKVKTNRVQNPEGWEL 17 (83)
Q Consensus 1 MPkir~~~k~pPeG~e~ 17 (83)
|++.+....+-|+||+.
T Consensus 3 m~~~~~~~~~LP~gWe~ 19 (49)
T 2kpz_A 3 MGPSEIEQGFLPKGWEV 19 (49)
T ss_dssp ---------CCCTTEEE
T ss_pred CccccccCCCCCCCcEE
Confidence 55555444556899985
No 28
>3vej_A Ubiquitin-like protein MDY2; alpha helical, dimerization, homodimerization, protein bindi; 1.23A {Saccharomyces cerevisiae}
Probab=27.44 E-value=26 Score=20.04 Aligned_cols=11 Identities=36% Similarity=0.730 Sum_probs=9.1
Q ss_pred hhhhHHHHHHH
Q 040196 15 WELIEPTLREL 25 (83)
Q Consensus 15 ~e~IeptL~e~ 25 (83)
|+.||.+|+.=
T Consensus 8 Wd~Ie~lL~~~ 18 (41)
T 3vej_A 8 WDDIEALLKNN 18 (41)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999988754
No 29
>2aqe_A Transcriptional adaptor 2, ADA2 alpha; helix-turn-helix; NMR {Mus musculus} SCOP: a.4.1.18 PDB: 2aqf_A
Probab=26.44 E-value=25 Score=22.11 Aligned_cols=14 Identities=29% Similarity=0.963 Sum_probs=12.0
Q ss_pred HHHHHHHhhchhhH
Q 040196 32 ELYEFCLDQGYAVR 45 (83)
Q Consensus 32 eLYe~~l~~~yaD~ 45 (83)
.+|+|+++.|++.+
T Consensus 76 ~iydf~~~~Gwi~~ 89 (90)
T 2aqe_A 76 KIYDFLIREGYITK 89 (90)
T ss_dssp HHHHHHHHTTSSCC
T ss_pred HHHHHHHHcCCCCC
Confidence 69999999998754
No 30
>3eof_A Putative oxidoreductase; YP_213212.1, structural genomics, J center for structural genomics, JCSG, protein structure INI PSI-2; HET: FMN; 1.99A {Bacteroides fragilis nctc 9343} SCOP: d.90.1.0
Probab=24.39 E-value=49 Score=23.18 Aligned_cols=19 Identities=21% Similarity=0.242 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHhhchhh
Q 040196 26 QKEISMELYEFCLDQGYAV 44 (83)
Q Consensus 26 ~k~ISreLYe~~l~~~yaD 44 (83)
-+++|+.+-++|-+||+.|
T Consensus 230 ~~~~~~~~~~~~~~~~~~~ 248 (248)
T 3eof_A 230 NEFMSENLLKVLRRQGFMD 248 (248)
T ss_dssp HHHHHHHHHHHHHHTTSCC
T ss_pred HHHHHHHHHHHHHHcCCCC
Confidence 6789999999999999876
No 31
>2zc2_A DNAD-like replication protein; GI 24377835, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.10A {Streptococcus mutans UA159}
Probab=24.22 E-value=26 Score=20.48 Aligned_cols=42 Identities=12% Similarity=0.123 Sum_probs=25.2
Q ss_pred hhhHHHHHH--HHHHHHHHHHHHHHhh-----chhhHHHHHccCccchhh
Q 040196 16 ELIEPTLRE--LQKEISMELYEFCLDQ-----GYAVRNLIAKGKQPGYER 58 (83)
Q Consensus 16 e~IeptL~e--~~k~ISreLYe~~l~~-----~yaD~~LIaKWKK~GYE~ 58 (83)
+.|+.-+++ |...+=.++.++++.+ +|+|+=|.. |++.|...
T Consensus 24 ~~i~~w~~~~~~~~elI~~A~~~a~~~~~~s~~Yi~~Il~~-W~~~gi~T 72 (78)
T 2zc2_A 24 EDLQKTVSDDKTDPDLVRSALREAVFNGKTNWNYIQAILRN-WRHEGIST 72 (78)
T ss_dssp HHHHHHHTTTCCCHHHHHHHHHHHHHHTCCCHHHHHHHHHH-HHHTTCCS
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHH-HHHcCCCC
Confidence 345555544 2334555667777653 577776655 99998643
No 32
>1grj_A GREA protein; transcript elongation factor, transcript cleavage factor, transcription regulation; 2.20A {Escherichia coli} SCOP: a.2.1.1 d.26.1.2
Probab=24.13 E-value=42 Score=22.59 Aligned_cols=23 Identities=26% Similarity=0.267 Sum_probs=17.6
Q ss_pred CCCchhhhHHHHHHH----HHHHHHHH
Q 040196 11 NPEGWELIEPTLREL----QKEISMEL 33 (83)
Q Consensus 11 pPeG~e~IeptL~e~----~k~ISreL 33 (83)
.|+||+.++..|+.| |.+|...+
T Consensus 7 T~~g~~~L~~El~~L~~~~rp~i~~~i 33 (158)
T 1grj_A 7 TLRGAEKLREELDFLKSVRRPEIIAAI 33 (158)
T ss_dssp EHHHHHHHHHHHHHHHHTHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHhccchhhHhhH
Confidence 489999999999999 34455443
No 33
>1jig_A DLP-2; dodecamer, four-helix bundle, metal transport; 1.46A {Bacillus anthracis} SCOP: a.25.1.1
Probab=24.03 E-value=1.3e+02 Score=18.73 Aligned_cols=40 Identities=13% Similarity=0.054 Sum_probs=22.1
Q ss_pred CCCCCchhhhHHHHHHH----HHHHH--HHHHHHHHhh-chhhHHHHH
Q 040196 9 VQNPEGWELIEPTLREL----QKEIS--MELYEFCLDQ-GYAVRNLIA 49 (83)
Q Consensus 9 k~pPeG~e~IeptL~e~----~k~IS--reLYe~~l~~-~yaD~~LIa 49 (83)
+.||.|| .++..|..+ +..|. +++.+.+-+. .++-.+|+.
T Consensus 82 ~~~~~~~-~~~e~l~~~l~~e~~~~~~~~~~i~~a~~~~D~~T~~ll~ 128 (146)
T 1jig_A 82 NEGTSKE-SAEEMVQTLVNDYSALIQELKEGMEVAGEAGDATSADMLL 128 (146)
T ss_dssp CCCCSCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CCCCCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 4577888 555555555 33332 2566665543 566666553
No 34
>2p4v_A Transcription elongation factor GREB; transcript cleavage, GRE-factors, RNA polymerase; 2.60A {Escherichia coli}
Probab=23.16 E-value=38 Score=22.89 Aligned_cols=23 Identities=26% Similarity=0.514 Sum_probs=18.1
Q ss_pred CCCchhhhHHHHHHH----HHHHHHHH
Q 040196 11 NPEGWELIEPTLREL----QKEISMEL 33 (83)
Q Consensus 11 pPeG~e~IeptL~e~----~k~ISreL 33 (83)
.|+||+.++..|+.| |.+|.+++
T Consensus 7 T~~g~~~L~~EL~~L~~~~R~~i~~~i 33 (158)
T 2p4v_A 7 TREGYEKLKQELNYLWREERPEVTKKV 33 (158)
T ss_dssp CHHHHHHHHHHHHHHHHTHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHhcchHHHHHHH
Confidence 489999999999999 44555544
No 35
>1x4q_A U4/U6 small nuclear ribonucleoprotein PRP3; PWI domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=23.15 E-value=82 Score=19.85 Aligned_cols=28 Identities=18% Similarity=0.305 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhchhhHHHHH
Q 040196 19 EPTLRELQKEISMELYEFCLDQGYAVRNLIA 49 (83)
Q Consensus 19 eptL~e~~k~ISreLYe~~l~~~yaD~~LIa 49 (83)
.--|+.++.-|++.|.++| |+-|..||.
T Consensus 12 kv~l~~lkpWI~kkv~e~L---G~eD~~lVd 39 (92)
T 1x4q_A 12 KRELDELKPWIEKTVKRVL---GFSEPTVVT 39 (92)
T ss_dssp HHHHHHHHHHHHHHHHHHH---SSCCHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHc---CCCcHHHHH
Confidence 3347788888999999988 777777764
No 36
>2elj_A Transcriptional adapter 2; YDR448W, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Saccharomyces cerevisiae}
Probab=22.56 E-value=39 Score=21.06 Aligned_cols=12 Identities=25% Similarity=0.703 Sum_probs=10.2
Q ss_pred HHHHHHHhhchh
Q 040196 32 ELYEFCLDQGYA 43 (83)
Q Consensus 32 eLYe~~l~~~ya 43 (83)
.+|+|+++.|++
T Consensus 77 ~iydf~~~~Gwi 88 (88)
T 2elj_A 77 RIYDFFQSQNWM 88 (88)
T ss_dssp HHHHHHHHTTCC
T ss_pred HHHHHHHHcCCC
Confidence 689999999874
No 37
>1m46_B IQ4, IQ4 motif from MYO2P, A class V myosin; protein-peptide complex, myosin light chain, cell cycle protein; 2.10A {Saccharomyces cerevisiae}
Probab=22.52 E-value=92 Score=16.11 Aligned_cols=21 Identities=43% Similarity=0.436 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhh
Q 040196 20 PTLRELQKEISMELYEFCLDQ 40 (83)
Q Consensus 20 ptL~e~~k~ISreLYe~~l~~ 40 (83)
.|+..++|.|.+||-.--++|
T Consensus 4 rtitnlqkkirkelkqrqlkq 24 (26)
T 1m46_B 4 RTITNLQKKIRKELKQRQLKQ 24 (26)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhc
Confidence 477888999999998776665
No 38
>2khu_A Immunoglobulin G-binding protein G, DNA polymerase IOTA; UBM, ubiquitin-binding domain, translesion synthesis, TLS, ubiquitin-binding protein; NMR {Streptococcus SP} PDB: 2khw_A 2l0f_B*
Probab=21.57 E-value=18 Score=24.54 Aligned_cols=14 Identities=29% Similarity=0.432 Sum_probs=10.5
Q ss_pred hhHHHHHccCccch
Q 040196 43 AVRNLIAKGKQPGY 56 (83)
Q Consensus 43 aD~~LIaKWKK~GY 56 (83)
+-+.|||-||.+|=
T Consensus 80 VQ~ELla~Wr~~~~ 93 (108)
T 2khu_A 80 VQKELLAEWKRTGS 93 (108)
T ss_dssp HHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHhCC
Confidence 45688999998874
No 39
>1wjt_A Transcription elongation factor S-II protein 3; four-helix bundle, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: a.48.3.1
Probab=21.49 E-value=19 Score=23.26 Aligned_cols=12 Identities=25% Similarity=0.174 Sum_probs=9.5
Q ss_pred hhHHHHHccCcc
Q 040196 43 AVRNLIAKGKQP 54 (83)
Q Consensus 43 aD~~LIaKWKK~ 54 (83)
.-+.||.+||+.
T Consensus 74 lAk~Lv~~WK~~ 85 (103)
T 1wjt_A 74 LAKVLIKNWKRL 85 (103)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 447899999974
No 40
>2cuj_A Transcriptional adaptor 2-like; transcriptional regulation, nuclear protein, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.18
Probab=21.47 E-value=33 Score=22.45 Aligned_cols=14 Identities=29% Similarity=0.963 Sum_probs=12.1
Q ss_pred HHHHHHHhhchhhH
Q 040196 32 ELYEFCLDQGYAVR 45 (83)
Q Consensus 32 eLYe~~l~~~yaD~ 45 (83)
.||+|+++.|++.+
T Consensus 94 rIydff~~~GWi~~ 107 (108)
T 2cuj_A 94 KIYDFLIREGYITK 107 (108)
T ss_dssp HHHHHHHTTTSSCC
T ss_pred HHHHHHHHcCCCCC
Confidence 69999999998754
No 41
>1n1q_A DPS protein; four-helix bundle, unknown function; 2.20A {Brevibacillus brevis} SCOP: a.25.1.1
Probab=21.25 E-value=1.5e+02 Score=18.45 Aligned_cols=40 Identities=5% Similarity=0.035 Sum_probs=21.9
Q ss_pred CCCCCchhhhHHHHHHH----HHHHH--HHHHHHHHh-hchhhHHHHH
Q 040196 9 VQNPEGWELIEPTLREL----QKEIS--MELYEFCLD-QGYAVRNLIA 49 (83)
Q Consensus 9 k~pPeG~e~IeptL~e~----~k~IS--reLYe~~l~-~~yaD~~LIa 49 (83)
+.||.|| .+++.|..+ +..|+ +++.+.+-+ ..++-.+|+.
T Consensus 85 ~~~~~~~-~~~e~l~~~l~~e~~~~~~~~~~i~~a~~~~D~~T~~ll~ 131 (149)
T 1n1q_A 85 KEATGGE-SAAEMVSSVVNDFVDLVGELKVARDVADEADDEATADMLD 131 (149)
T ss_dssp CCCCSCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CCCCCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 4577788 555555555 33332 246665554 2555555553
No 42
>3i5p_A Nucleoporin NUP170; helical stack, membrane, mRNA transport, nuclear pore complex, nucleus, phosphoprotein, protein transport; 3.20A {Saccharomyces cerevisiae}
Probab=21.25 E-value=53 Score=26.57 Aligned_cols=22 Identities=14% Similarity=0.344 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHhhchhhHHH
Q 040196 26 QKEISMELYEFCLDQGYAVRNL 47 (83)
Q Consensus 26 ~k~ISreLYe~~l~~~yaD~~L 47 (83)
.+..--.||+|++.+|..|.=|
T Consensus 177 DelFH~~LYdWli~~gl~d~LL 198 (525)
T 3i5p_A 177 DRLFHYHMYDWLVSQNREEKLL 198 (525)
T ss_dssp CHHHHHHHHHHHHHTTCGGGGG
T ss_pred hHHHHHHHHHHHHhCCCcchhh
Confidence 4556667999999999988643
No 43
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=20.82 E-value=1.6e+02 Score=18.87 Aligned_cols=38 Identities=18% Similarity=0.347 Sum_probs=28.6
Q ss_pred CchhhhHHHHHHH------HHHHHHHHHHHHHhhchhhHHHHHc
Q 040196 13 EGWELIEPTLREL------QKEISMELYEFCLDQGYAVRNLIAK 50 (83)
Q Consensus 13 eG~e~IeptL~e~------~k~ISreLYe~~l~~~yaD~~LIaK 50 (83)
.||+.+-..|+++ -..+--++..-++..|.++.+++.+
T Consensus 82 ~Gf~~v~~~l~Dl~lDiP~a~~~l~~~v~~ai~~g~l~~~~~~~ 125 (129)
T 2nsz_A 82 RGYERIYNEIPDINLDVPHSYSVLERFVEECFQAGIISKQLRDL 125 (129)
T ss_dssp HHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTCSCHHHHHT
T ss_pred HHHHHHHhhChHhhcCccchHHHHHHHHHHHHHCCCCCHHHHhh
Confidence 4888888888888 3445556777888888888888764
No 44
>1uhr_A SWI/SNF related, matrix associated, actin dependent regulator of chromatin subfamily...; structural genomics, chromatin remodeling; NMR {Mus musculus} SCOP: a.42.1.1
Probab=20.50 E-value=30 Score=21.70 Aligned_cols=33 Identities=18% Similarity=0.401 Sum_probs=26.9
Q ss_pred CCchhhhHHHHHHH-------HHHHHHHHHHHHHhhchhhH
Q 040196 12 PEGWELIEPTLREL-------QKEISMELYEFCLDQGYAVR 45 (83)
Q Consensus 12 PeG~e~IeptL~e~-------~k~ISreLYe~~l~~~yaD~ 45 (83)
|+=|. +.|.|.+| |-.|-+.|++|.-.+++-|+
T Consensus 9 p~~~~-lS~~La~~lG~~~~sr~evvk~lW~YIK~n~Lqdp 48 (93)
T 1uhr_A 9 PPQFK-LDPRLARLLGIHTQTRPVIIQALWQYIKTHKLQDP 48 (93)
T ss_dssp CCEEE-ECTTHHHHTCCSEEEHHHHHHHHHHHHHHTTCBCS
T ss_pred CCccC-cCHHHHHHHCCCccCHHHHHHHHHHHHHhccCCCc
Confidence 44444 66778888 88899999999999999874
No 45
>2eqf_A Tumor necrosis factor, alpha-induced protein 3; ZF-A20 domain, putative DNA-binding protein A20, zinc finger protein A20, structural genomics; NMR {Homo sapiens}
Probab=20.07 E-value=45 Score=19.47 Aligned_cols=17 Identities=29% Similarity=0.653 Sum_probs=13.5
Q ss_pred ccccccCCCCcchhhhh
Q 040196 62 LRCMQPHDHNFQMHECA 78 (83)
Q Consensus 62 l~CIq~~d~nfgt~~c~ 78 (83)
.||-.+.=++||++.|.
T Consensus 10 qrC~apgCdhygN~kc~ 26 (46)
T 2eqf_A 10 QRCRAPACDHFGNAKCN 26 (46)
T ss_dssp CSCSSTTCCSCCBGGGT
T ss_pred ccccCcccccccchhhh
Confidence 47778888899998863
Done!