Query 040196
Match_columns 83
No_of_seqs 106 out of 141
Neff 3.3
Searched_HMMs 13730
Date Mon Mar 25 09:19:02 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040196.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/040196hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1ou8a_ b.136.1.1 (A:) Stringe 64.7 1.3 9.2E-05 28.2 1.5 15 29-43 8-22 (106)
2 d1yfna1 b.136.1.1 (A:4-111) St 62.1 1.5 0.00011 27.9 1.5 15 29-43 10-24 (108)
3 d3ci0k1 a.60.16.1 (K:204-274) 54.1 2.2 0.00016 25.2 1.1 16 9-24 35-50 (71)
4 d1a0pa1 a.60.9.1 (A:3-100) Rec 50.6 2.2 0.00016 24.5 0.7 16 31-46 78-93 (98)
5 d1dl6a_ g.41.3.1 (A:) Transcri 48.1 2.4 0.00017 23.9 0.6 26 57-82 10-38 (58)
6 d2qtva4 d.109.2.1 (A:627-768) 47.1 1.6 0.00012 29.0 -0.4 13 46-58 42-54 (142)
7 d1ydxa1 d.287.1.2 (A:1-193) Bi 44.5 20 0.0015 21.0 4.6 38 15-52 146-193 (193)
8 d2ho2a1 b.72.1.1 (A:253-285) A 42.8 0.71 5.2E-05 24.4 -2.2 10 11-20 3-12 (33)
9 d1grja1 a.2.1.1 (A:2-79) GreA 42.1 5.9 0.00043 23.3 1.8 22 12-33 7-32 (78)
10 d1v31a_ a.42.1.1 (A:) Hypothet 39.9 4.9 0.00036 24.0 1.1 30 17-46 13-49 (93)
11 d1lvaa3 a.4.5.35 (A:511-574) C 39.4 13 0.00096 20.3 2.9 18 27-44 37-54 (64)
12 d1uhra_ a.42.1.1 (A:) SWI/SNF 35.7 5.2 0.00038 24.0 0.7 28 18-45 14-48 (93)
13 d2cuja1 a.4.1.18 (A:8-108) Tra 35.0 6.5 0.00047 24.0 1.1 15 31-45 86-100 (101)
14 d2f23a1 a.2.1.1 (A:3-77) GreA 31.4 11 0.00081 21.9 1.8 23 11-33 6-31 (75)
15 d1peqa1 a.98.1.1 (A:13-174) R1 31.0 22 0.0016 22.8 3.4 23 32-54 49-71 (162)
16 d1qe0a2 d.104.1.1 (A:1-325) Hi 28.5 21 0.0016 23.5 3.0 33 10-42 3-35 (325)
17 d2prra1 a.152.1.3 (A:5-194) Un 27.2 12 0.00085 23.3 1.4 37 13-49 113-156 (190)
18 d1q1va_ a.159.4.1 (A:) DEK C-t 26.6 52 0.0038 18.5 4.4 35 1-37 2-46 (70)
19 d2a2ma1 a.132.1.3 (A:10-240) H 24.7 20 0.0014 23.4 2.2 35 9-43 22-72 (231)
20 d1dcqa2 g.45.1.1 (A:247-368) P 24.0 9.1 0.00066 23.5 0.4 25 57-81 14-42 (122)
21 d2cp8a1 a.5.2.1 (A:8-48) Migra 22.1 26 0.0019 18.8 2.0 18 32-49 4-21 (41)
22 d1xl7a1 c.43.1.3 (A:11-392) Pe 21.7 16 0.0011 26.1 1.3 42 11-52 34-75 (382)
23 d1m1la_ d.260.1.1 (A:) Suppres 20.8 16 0.0011 25.2 1.1 16 10-25 3-18 (236)
24 d1ubdc2 g.37.1.1 (C:323-350) Y 20.5 7.5 0.00055 19.5 -0.5 8 75-82 3-10 (28)
25 d1fkma2 a.69.2.1 (A:443-630) Y 20.2 69 0.0051 19.7 4.2 35 17-51 4-41 (188)
No 1
>d1ou8a_ b.136.1.1 (A:) Stringent starvation protein B, SspB {Haemophilus influenzae [TaxId: 727]}
Probab=64.68 E-value=1.3 Score=28.19 Aligned_cols=15 Identities=13% Similarity=0.554 Sum_probs=12.5
Q ss_pred HHHHHHHHHHhhchh
Q 040196 29 ISMELYEFCLDQGYA 43 (83)
Q Consensus 29 ISreLYe~~l~~~ya 43 (83)
+=|.+||||+++|+-
T Consensus 8 LiRA~y~W~~Dn~~T 22 (106)
T d1ou8a_ 8 LLRAYYDWLVDNSFT 22 (106)
T ss_dssp HHHHHHHHHHHTTCC
T ss_pred hHHHHHHHHHHCCCC
Confidence 457899999999973
No 2
>d1yfna1 b.136.1.1 (A:4-111) Stringent starvation protein B, SspB {Escherichia coli [TaxId: 562]}
Probab=62.08 E-value=1.5 Score=27.90 Aligned_cols=15 Identities=27% Similarity=0.523 Sum_probs=12.5
Q ss_pred HHHHHHHHHHhhchh
Q 040196 29 ISMELYEFCLDQGYA 43 (83)
Q Consensus 29 ISreLYe~~l~~~ya 43 (83)
+=|.+||||+++|+-
T Consensus 10 liRA~y~W~~Dn~~T 24 (108)
T d1yfna1 10 LLRAFYEWLLDNQLT 24 (108)
T ss_dssp HHHHHHHHHHHTTCC
T ss_pred hHHHHHHHHHHCCCC
Confidence 457899999999963
No 3
>d3ci0k1 a.60.16.1 (K:204-274) Pseudopilin GspK {Escherichia coli [TaxId: 562]}
Probab=54.07 E-value=2.2 Score=25.16 Aligned_cols=16 Identities=25% Similarity=0.615 Sum_probs=13.5
Q ss_pred CCCCCchhhhHHHHHH
Q 040196 9 VQNPEGWELIEPTLRE 24 (83)
Q Consensus 9 k~pPeG~e~IeptL~e 24 (83)
.+|.+||+.|++.+.+
T Consensus 35 ~RP~~Gw~sv~~F~~~ 50 (71)
T d3ci0k1 35 QRPAKGWEDVDQFLAQ 50 (71)
T ss_dssp TCCTTCCSCHHHHHTS
T ss_pred hCCcchhhhHHHHHhC
Confidence 5699999999998764
No 4
>d1a0pa1 a.60.9.1 (A:3-100) Recombinase XerD {Escherichia coli [TaxId: 562]}
Probab=50.60 E-value=2.2 Score=24.51 Aligned_cols=16 Identities=6% Similarity=0.374 Sum_probs=13.7
Q ss_pred HHHHHHHHhhchhhHH
Q 040196 31 MELYEFCLDQGYAVRN 46 (83)
Q Consensus 31 reLYe~~l~~~yaD~~ 46 (83)
|-+|.||.++|+++.|
T Consensus 78 r~ff~~l~~~~~i~~n 93 (98)
T d1a0pa1 78 RRLFQYLYREKFREDD 93 (98)
T ss_dssp HHHHHHHHHTTSSSSC
T ss_pred HHHHHHHHHCCCcCcC
Confidence 3589999999999876
No 5
>d1dl6a_ g.41.3.1 (A:) Transcription initiation factor TFIIB, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=48.06 E-value=2.4 Score=23.86 Aligned_cols=26 Identities=23% Similarity=0.298 Sum_probs=19.7
Q ss_pred hhhhhccccccC---CCCcchhhhhhhhc
Q 040196 57 ERLCCLRCMQPH---DHNFQMHECAECLR 82 (83)
Q Consensus 57 E~LCCl~CIq~~---d~nfgt~~c~~~~~ 82 (83)
+++=|..|-.+. |+.-|..+|..|..
T Consensus 10 ~~~~Cp~Cgs~~ii~D~~~Ge~vC~~CG~ 38 (58)
T d1dl6a_ 10 PRVTCPNHPDAILVEDYRAGDMICPECGL 38 (58)
T ss_dssp SCCSBTTBSSSCCEECSSSCCEECTTTCC
T ss_pred cccCCCCCCCCCEEEECCCCcEecccCCC
Confidence 345578887765 66779999999963
No 6
>d2qtva4 d.109.2.1 (A:627-768) Sec23 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=47.14 E-value=1.6 Score=28.98 Aligned_cols=13 Identities=31% Similarity=0.603 Sum_probs=10.8
Q ss_pred HHHHccCccchhh
Q 040196 46 NLIAKGKQPGYER 58 (83)
Q Consensus 46 ~LIaKWKK~GYE~ 58 (83)
+-||.|+|+||..
T Consensus 42 ~~Ia~Wrkagy~~ 54 (142)
T d2qtva4 42 EQIAQWRKAGYQD 54 (142)
T ss_dssp HHHHHHHHHTGGG
T ss_pred cHHHHHHHcCCcc
Confidence 5689999999953
No 7
>d1ydxa1 d.287.1.2 (A:1-193) Bipartite methylase S protein MG438 {Mycoplasma genitalium [TaxId: 2097]}
Probab=44.51 E-value=20 Score=21.02 Aligned_cols=38 Identities=18% Similarity=0.155 Sum_probs=21.5
Q ss_pred hhhhHHHHHHH-------HH--HHHHHHHHHHHhhch-hhHHHHHccC
Q 040196 15 WELIEPTLREL-------QK--EISMELYEFCLDQGY-AVRNLIAKGK 52 (83)
Q Consensus 15 ~e~IeptL~e~-------~k--~ISreLYe~~l~~~y-aD~~LIaKWK 52 (83)
=+.|...|+.+ ++ ...+++.+.++.+=+ .+..++++||
T Consensus 146 Q~~I~~~l~~ld~~i~~~~~~i~~l~~~~~~ll~~lft~~~~~~~~w~ 193 (193)
T d1ydxa1 146 QHAIANTLSVFDERLENLASLIEINRKLRDEYAHKLFSLDEAFLSHWK 193 (193)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccChhhhhhcC
Confidence 34555555555 22 223456666666422 2567888997
No 8
>d2ho2a1 b.72.1.1 (A:253-285) Amyloid beta A4 precursor protein-binding family B member 1, APBB1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=42.76 E-value=0.71 Score=24.40 Aligned_cols=10 Identities=30% Similarity=0.843 Sum_probs=8.0
Q ss_pred CCCchhhhHH
Q 040196 11 NPEGWELIEP 20 (83)
Q Consensus 11 pPeG~e~Iep 20 (83)
-|+||++|++
T Consensus 3 LPpGW~ki~D 12 (33)
T d2ho2a1 3 LPAGWMRVQD 12 (33)
T ss_dssp SCTTEEEEEC
T ss_pred CCCcceeeec
Confidence 3889999875
No 9
>d1grja1 a.2.1.1 (A:2-79) GreA transcript cleavage protein, N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=42.07 E-value=5.9 Score=23.31 Aligned_cols=22 Identities=27% Similarity=0.271 Sum_probs=17.2
Q ss_pred CCchhhhHHHHHHH----HHHHHHHH
Q 040196 12 PEGWELIEPTLREL----QKEISMEL 33 (83)
Q Consensus 12 PeG~e~IeptL~e~----~k~ISreL 33 (83)
|+||+.++..|+.| +.+|++++
T Consensus 7 ~eg~~~L~~EL~~L~~~~rpei~~~I 32 (78)
T d1grja1 7 LRGAEKLREELDFLKSVRRPEIIAAI 32 (78)
T ss_dssp HHHHHHHHHHHHHHHHTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHccHHHHHHHH
Confidence 79999999999998 33555544
No 10
>d1v31a_ a.42.1.1 (A:) Hypothetical protein AT5G14170 (rafl11-05-p19) {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Probab=39.94 E-value=4.9 Score=23.96 Aligned_cols=30 Identities=10% Similarity=0.247 Sum_probs=25.8
Q ss_pred hhHHHHHHH-------HHHHHHHHHHHHHhhchhhHH
Q 040196 17 LIEPTLREL-------QKEISMELYEFCLDQGYAVRN 46 (83)
Q Consensus 17 ~IeptL~e~-------~k~ISreLYe~~l~~~yaD~~ 46 (83)
.|.|.|.+| |-.|.+.|++|.-.+++-|.+
T Consensus 13 ~lS~~La~~lg~~~~sR~~v~k~iw~YIk~n~Lqd~~ 49 (93)
T d1v31a_ 13 KLSTALMDVLGIEVETRPRIIAAIWHYVKARKLQNPN 49 (93)
T ss_dssp ECCHHHHHHSCCSEECSHHHHHHHHHHHHHTTCBCSS
T ss_pred cCCHHHHHHHCcCcCcHHHHHHHHHHHHHHhCCCCCC
Confidence 467889999 889999999999999997653
No 11
>d1lvaa3 a.4.5.35 (A:511-574) C-terminal fragment of elongation factor SelB {Moorella thermoacetica [TaxId: 1525]}
Probab=39.41 E-value=13 Score=20.32 Aligned_cols=18 Identities=22% Similarity=0.285 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHhhchhh
Q 040196 27 KEISMELYEFCLDQGYAV 44 (83)
Q Consensus 27 k~ISreLYe~~l~~~yaD 44 (83)
..--++|+.+++++|++.
T Consensus 37 e~~~~~lL~~l~~~G~lv 54 (64)
T d1lvaa3 37 PSELEELLHYLVREGVLV 54 (64)
T ss_dssp HHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHHHHHHCCCEE
Confidence 344588999999999864
No 12
>d1uhra_ a.42.1.1 (A:) SWI/SNF related regulator of chromatin (BRG1-associated factor 60a) {Mouse (Mus musculus) [TaxId: 10090]}
Probab=35.73 E-value=5.2 Score=24.01 Aligned_cols=28 Identities=18% Similarity=0.343 Sum_probs=24.7
Q ss_pred hHHHHHHH-------HHHHHHHHHHHHHhhchhhH
Q 040196 18 IEPTLREL-------QKEISMELYEFCLDQGYAVR 45 (83)
Q Consensus 18 IeptL~e~-------~k~ISreLYe~~l~~~yaD~ 45 (83)
|.|.|.+| |-.|.+.|++|.-.+++-|.
T Consensus 14 lS~~La~~lg~~~~sR~~v~k~iw~YIk~n~Lqdp 48 (93)
T d1uhra_ 14 LDPRLARLLGIHTQTRPVIIQALWQYIKTHKLQDP 48 (93)
T ss_dssp ECTTHHHHTCCSEEEHHHHHHHHHHHHHHTTCBCS
T ss_pred CCHHHHHHHCCCCcCHHHHHHHHHHHHHHhcCCCC
Confidence 57778888 99999999999999999764
No 13
>d2cuja1 a.4.1.18 (A:8-108) Transcriptional adaptor 2-like, TADA2L {Mouse (Mus musculus) [TaxId: 10090]}
Probab=35.02 E-value=6.5 Score=23.98 Aligned_cols=15 Identities=27% Similarity=0.862 Sum_probs=12.7
Q ss_pred HHHHHHHHhhchhhH
Q 040196 31 MELYEFCLDQGYAVR 45 (83)
Q Consensus 31 reLYe~~l~~~yaD~ 45 (83)
+.||+|++++|++.+
T Consensus 86 ~rIydfl~~~GWi~~ 100 (101)
T d2cuja1 86 RKIYDFLIREGYITK 100 (101)
T ss_dssp HHHHHHHHTTTSSCC
T ss_pred HHHHHHHHHccCccc
Confidence 569999999999764
No 14
>d2f23a1 a.2.1.1 (A:3-77) GreA transcript cleavage protein, N-terminal domain {Thermus thermophilus [TaxId: 274]}
Probab=31.42 E-value=11 Score=21.86 Aligned_cols=23 Identities=22% Similarity=0.273 Sum_probs=16.7
Q ss_pred CCCchhhhHHHHHHH---HHHHHHHH
Q 040196 11 NPEGWELIEPTLREL---QKEISMEL 33 (83)
Q Consensus 11 pPeG~e~IeptL~e~---~k~ISreL 33 (83)
.|+||+.++..|+.+ +..|++++
T Consensus 6 T~eg~~kL~~EL~~l~~~r~ei~~~I 31 (75)
T d2f23a1 6 TKAGYERLMQQLERERERLQEATKIL 31 (75)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 379999999999887 34444443
No 15
>d1peqa1 a.98.1.1 (A:13-174) R1 subunit of ribonucleotide reductase, N-terminal domain {Salmonella typhimurium [TaxId: 90371]}
Probab=31.00 E-value=22 Score=22.80 Aligned_cols=23 Identities=17% Similarity=0.245 Sum_probs=19.4
Q ss_pred HHHHHHHhhchhhHHHHHccCcc
Q 040196 32 ELYEFCLDQGYAVRNLIAKGKQP 54 (83)
Q Consensus 32 eLYe~~l~~~yaD~~LIaKWKK~ 54 (83)
|--++++++|+-|++++++|.+.
T Consensus 49 eri~~LV~~g~Yd~~il~~Ys~e 71 (162)
T d1peqa1 49 ERLGTLVREGYYDDAVLARYDRA 71 (162)
T ss_dssp HHHHHHHHTTSBCHHHHTTSCHH
T ss_pred HHHHHHhhcCcccHHHHHHccHH
Confidence 44789999999999999988754
No 16
>d1qe0a2 d.104.1.1 (A:1-325) Histidyl-tRNA synthetase (HisRS) {Staphylococcus aureus [TaxId: 1280]}
Probab=28.52 E-value=21 Score=23.54 Aligned_cols=33 Identities=24% Similarity=0.191 Sum_probs=27.9
Q ss_pred CCCCchhhhHHHHHHHHHHHHHHHHHHHHhhch
Q 040196 10 QNPEGWELIEPTLRELQKEISMELYEFCLDQGY 42 (83)
Q Consensus 10 ~pPeG~e~IeptL~e~~k~ISreLYe~~l~~~y 42 (83)
+.|+|+.++-|.-...++.|.+.|-+...+.||
T Consensus 3 ~lP~G~rD~lp~~~~~~~~i~~~l~~~f~~~Gy 35 (325)
T d1qe0a2 3 KIPRGTQDILPEDSKKWRYIENQLDELMTFYNY 35 (325)
T ss_dssp CCCTTCCCBCHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred CCCCCCcCCCHHHHHHHHHHHHHHHHHHHHcCC
Confidence 469999999998888888888888888888776
No 17
>d2prra1 a.152.1.3 (A:5-194) Uncharacterized protein Reut_A2532 {Ralstonia eutropha [TaxId: 106590]}
Probab=27.20 E-value=12 Score=23.29 Aligned_cols=37 Identities=8% Similarity=0.160 Sum_probs=26.5
Q ss_pred CchhhhHHHHHHH-------HHHHHHHHHHHHHhhchhhHHHHH
Q 040196 13 EGWELIEPTLREL-------QKEISMELYEFCLDQGYAVRNLIA 49 (83)
Q Consensus 13 eG~e~IeptL~e~-------~k~ISreLYe~~l~~~yaD~~LIa 49 (83)
++|+.-+..+.+| ...||.++++-+...||-|+.++.
T Consensus 113 ~~~~~~~~a~l~~a~~~~~~~~~v~d~~~~~L~~~g~s~~eive 156 (190)
T d2prra1 113 ADIPPRQRAMLDFALKVCKASHEVNEADFEALREHGFTDEDAWD 156 (190)
T ss_dssp SSCCHHHHHHHHHHHHHHHHGGGCCHHHHHHHHTTTCCHHHHHH
T ss_pred ccccHHHHHHHHHHHHHHHhccCCCHHHHHHHHHcCCCHHHHHH
Confidence 3455555555555 336888999999999999988763
No 18
>d1q1va_ a.159.4.1 (A:) DEK C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=26.55 E-value=52 Score=18.49 Aligned_cols=35 Identities=29% Similarity=0.461 Sum_probs=21.7
Q ss_pred CCCCCCCCCCCCCchhhhHHHHHHH----------HHHHHHHHHHHH
Q 040196 1 MPKVKTNRVQNPEGWELIEPTLREL----------QKEISMELYEFC 37 (83)
Q Consensus 1 MPkir~~~k~pPeG~e~IeptL~e~----------~k~ISreLYe~~ 37 (83)
+|-+++. ++||-- +.|...|.++ .|.|-++|++-+
T Consensus 2 ~p~~~~~-k~~ptd-~ei~~~i~~IL~~aDL~tvT~K~IR~~LE~~~ 46 (70)
T d1q1va_ 2 EPLIKKL-KKPPTD-EELKETIKKLLASANLEEVTMKQICKKVYENY 46 (70)
T ss_dssp CSCCCCC-CCCCCH-HHHHHHHHHHHTTSCGGGCCHHHHHHHHHHHC
T ss_pred ccccccc-cCCCCH-HHHHHHHHHHHHhCCHHHhhHHHHHHHHHHHc
Confidence 3555544 344444 5666667777 778888887543
No 19
>d2a2ma1 a.132.1.3 (A:10-240) Hypothetical protein BT3146 {Bacteroides thetaiotaomicron [TaxId: 818]}
Probab=24.70 E-value=20 Score=23.43 Aligned_cols=35 Identities=11% Similarity=0.019 Sum_probs=24.4
Q ss_pred CCCCCc------hhhhHHHHHHH----------HHHHHHHHHHHHHhhchh
Q 040196 9 VQNPEG------WELIEPTLREL----------QKEISMELYEFCLDQGYA 43 (83)
Q Consensus 9 k~pPeG------~e~IeptL~e~----------~k~ISreLYe~~l~~~ya 43 (83)
..||+| |+..++.-++. ...+++|-|.+-|.|.|.
T Consensus 22 ~~~~~~~~~~~L~~~~~~i~~~~~~h~Fv~~l~~GtL~~e~F~~YL~QDy~ 72 (231)
T d2a2ma1 22 DVPAADSLFWKLWNGSLDTAVQVLQTDYFKGIAAGTLDPNAYGSLMVQDGY 72 (231)
T ss_dssp SCCCTTSHHHHHHHHTHHHHHHHHTSHHHHHHHHTCCCHHHHHHHHHHHHH
T ss_pred CCCCCchHHHHHHHHHHHHHHHHHCCHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 567888 88877776665 556677777777776653
No 20
>d1dcqa2 g.45.1.1 (A:247-368) Pyk2-associated protein beta ARF-GAP domain {Mouse (Mus musculus) [TaxId: 10090]}
Probab=24.03 E-value=9.1 Score=23.46 Aligned_cols=25 Identities=28% Similarity=0.669 Sum_probs=18.8
Q ss_pred hhhhhccccccC----CCCcchhhhhhhh
Q 040196 57 ERLCCLRCMQPH----DHNFQMHECAECL 81 (83)
Q Consensus 57 E~LCCl~CIq~~----d~nfgt~~c~~~~ 81 (83)
++-.|-.|-++. ..|||.-+|.+|.
T Consensus 14 ~N~~CaDC~~~~p~w~s~n~GvfvC~~Cs 42 (122)
T d1dcqa2 14 GNDVCCDCGAPDPTWLSTNLGILTCIECS 42 (122)
T ss_dssp TTTBCTTTCCBSCCEEETTTTEEECHHHH
T ss_pred CCCccCCCCCCCCCeEEecCCEEEchhhh
Confidence 356788886554 3589999999994
No 21
>d2cp8a1 a.5.2.1 (A:8-48) Migration-inducing protein 19 NBR1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=22.11 E-value=26 Score=18.76 Aligned_cols=18 Identities=22% Similarity=0.383 Sum_probs=14.8
Q ss_pred HHHHHHHhhchhhHHHHH
Q 040196 32 ELYEFCLDQGYAVRNLIA 49 (83)
Q Consensus 32 eLYe~~l~~~yaD~~LIa 49 (83)
.|.+-|++.||.|+.|=-
T Consensus 4 ~lM~~L~EMGF~DR~lNq 21 (41)
T d2cp8a1 4 ALMAHLFEMGFCDRQLNL 21 (41)
T ss_dssp HHHHHHHHHTCCCHHHHH
T ss_pred HHHHHHHHhCcchhHHHH
Confidence 478899999999997743
No 22
>d1xl7a1 c.43.1.3 (A:11-392) Peroxisomal carnitine O-octanoyltransferase, COT {Mouse (Mus musculus) [TaxId: 10090]}
Probab=21.71 E-value=16 Score=26.09 Aligned_cols=42 Identities=17% Similarity=0.218 Sum_probs=32.5
Q ss_pred CCCchhhhHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHccC
Q 040196 11 NPEGWELIEPTLRELQKEISMELYEFCLDQGYAVRNLIAKGK 52 (83)
Q Consensus 11 pPeG~e~IeptL~e~~k~ISreLYe~~l~~~yaD~~LIaKWK 52 (83)
.++.|+......++|.+.+-.+|.+.|++..-...|-++.|-
T Consensus 34 ~~~e~~~t~~~v~~F~~~~G~~Lq~~L~e~a~~~~NWl~~~W 75 (382)
T d1xl7a1 34 NEDEYKKTEEIVQKFQEGAGKRLHQKLLERARGKRNWLEEWW 75 (382)
T ss_dssp CHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHCTTSSHHHH
T ss_pred CHHHHHHHHHHHHHHHhChHHHHHHHHHHHhccCCCcchHHH
Confidence 467778888888888878888899999887666667777763
No 23
>d1m1la_ d.260.1.1 (A:) Suppressor of Fused, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=20.79 E-value=16 Score=25.24 Aligned_cols=16 Identities=31% Similarity=0.308 Sum_probs=13.0
Q ss_pred CCCCchhhhHHHHHHH
Q 040196 10 QNPEGWELIEPTLREL 25 (83)
Q Consensus 10 ~pPeG~e~IeptL~e~ 25 (83)
-.|+||+-|...+.++
T Consensus 3 ~~~pG~~ai~~~~~~~ 18 (236)
T d1m1la_ 3 LFPPGLHAIYGECRRL 18 (236)
T ss_dssp CCCHHHHHHHHHHHHH
T ss_pred ccCchHHHHHHHHHHH
Confidence 3589999999988765
No 24
>d1ubdc2 g.37.1.1 (C:323-350) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}
Probab=20.55 E-value=7.5 Score=19.48 Aligned_cols=8 Identities=63% Similarity=1.306 Sum_probs=6.4
Q ss_pred hhhhhhhc
Q 040196 75 HECAECLR 82 (83)
Q Consensus 75 ~~c~~~~~ 82 (83)
.+|+||.+
T Consensus 3 hvc~ecgk 10 (28)
T d1ubdc2 3 HVCAECGK 10 (28)
T ss_dssp EECTTTCC
T ss_pred chHHHHhH
Confidence 58999975
No 25
>d1fkma2 a.69.2.1 (A:443-630) Ypt/Rab-GAP domain of gyp1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=20.16 E-value=69 Score=19.72 Aligned_cols=35 Identities=17% Similarity=0.207 Sum_probs=23.0
Q ss_pred hhHHHHHHH---HHHHHHHHHHHHHhhchhhHHHHHcc
Q 040196 17 LIEPTLREL---QKEISMELYEFCLDQGYAVRNLIAKG 51 (83)
Q Consensus 17 ~IeptL~e~---~k~ISreLYe~~l~~~yaD~~LIaKW 51 (83)
-|...+..| =+....+||+++-+.|.-..-..-+|
T Consensus 4 Gi~~~~~~l~~ll~~~dp~L~~hl~~~~i~~~~~~~rW 41 (188)
T d1fkma2 4 GILRQVKNLSQLVKRIDADLYNHFQNEHVEFIQFAFRW 41 (188)
T ss_dssp HHHHHHHHHHHHHHHHCHHHHHHHHHTTCCTHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHcCCCeeeeeHHH
Confidence 344444444 45566799999998887655555566
Done!