BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 040197
         (416 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q3KM09|Y378_CHLTA Maf-like protein CTA_0378 OS=Chlamydia trachomatis serovar A
           (strain HAR-13 / ATCC VR-571B) GN=CTA_0378 PE=3 SV=1
          Length = 196

 Score = 33.9 bits (76), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 20/69 (28%), Positives = 32/69 (46%), Gaps = 2/69 (2%)

Query: 48  NGNVVKSIQSEDGDII--DCVCIYKQPAFDHPALKDHIIQMTPTYDPNGKTVTTGSADTE 105
             NVV+S    D  II  D V +YK   F+ P  ++H ++M  T   +  +V T     +
Sbjct: 54  KANVVRSQGFSDALIITADTVVVYKGEVFNKPESEEHAVEMLRTLSGSSHSVITTLVLMQ 113

Query: 106 TSTTVMASQ 114
               + AS+
Sbjct: 114 NEKVLSASE 122


>sp|O84353|Y349_CHLTR Maf-like protein CT_349 OS=Chlamydia trachomatis (strain D/UW-3/Cx)
           GN=CT_349 PE=3 SV=1
          Length = 196

 Score = 33.9 bits (76), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 20/69 (28%), Positives = 32/69 (46%), Gaps = 2/69 (2%)

Query: 48  NGNVVKSIQSEDGDII--DCVCIYKQPAFDHPALKDHIIQMTPTYDPNGKTVTTGSADTE 105
             NVV+S    D  II  D V +YK   F+ P  ++H ++M  T   +  +V T     +
Sbjct: 54  KANVVRSQGFSDALIITADTVVVYKGEVFNKPESEEHAVEMLRTLSGSSHSVITTLVLMQ 113

Query: 106 TSTTVMASQ 114
               + AS+
Sbjct: 114 NEKVLSASE 122


>sp|B0B7R8|Y603_CHLT2 Maf-like protein CTL0603 OS=Chlamydia trachomatis serovar L2
           (strain 434/Bu / ATCC VR-902B) GN=CTL0603 PE=3 SV=1
          Length = 196

 Score = 33.9 bits (76), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 20/69 (28%), Positives = 32/69 (46%), Gaps = 2/69 (2%)

Query: 48  NGNVVKSIQSEDGDII--DCVCIYKQPAFDHPALKDHIIQMTPTYDPNGKTVTTGSADTE 105
             NVV+S    D  II  D V +YK   F+ P  ++H ++M  T   +  +V T     +
Sbjct: 54  KANVVRSQGFSDALIITADTVVVYKGEVFNKPESEEHAVEMLRTLSGSSHSVITTLVLMQ 113

Query: 106 TSTTVMASQ 114
               + AS+
Sbjct: 114 NEKVLSASE 122


>sp|B0BBY3|Y601_CHLTB Maf-like protein CTLon_0601 OS=Chlamydia trachomatis serovar L2b
           (strain UCH-1/proctitis) GN=CTLon_0601 PE=3 SV=1
          Length = 196

 Score = 33.9 bits (76), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 20/69 (28%), Positives = 32/69 (46%), Gaps = 2/69 (2%)

Query: 48  NGNVVKSIQSEDGDII--DCVCIYKQPAFDHPALKDHIIQMTPTYDPNGKTVTTGSADTE 105
             NVV+S    D  II  D V +YK   F+ P  ++H ++M  T   +  +V T     +
Sbjct: 54  KANVVRSQGFSDALIITADTVVVYKGEVFNKPESEEHAVEMLRTLSGSSHSVITTLVLMQ 113

Query: 106 TSTTVMASQ 114
               + AS+
Sbjct: 114 NEKVLSASE 122


>sp|A6H5M5|YCF2_CYCTA Protein ycf2 OS=Cycas taitungensis GN=ycf2-A PE=3 SV=1
          Length = 2434

 Score = 33.1 bits (74), Expect = 4.6,   Method: Composition-based stats.
 Identities = 21/80 (26%), Positives = 35/80 (43%), Gaps = 8/80 (10%)

Query: 184 KGDIKVWNPFVESDDEYSTSRVSLQSGPYYDFESIESGWAVNPRVYGDRKTRLFVYWTAD 243
           K   ++WN + ESD   + S + L+   Y  F++    W    + Y D     FV W  D
Sbjct: 323 KNMFQIWNSWGESDQIIAESSILLKEKGYLSFQNYAEFW----QFYKDS----FVSWEKD 374

Query: 244 ASKTTGCFDVTCPGFVQVSN 263
             K     D+    F+Q+++
Sbjct: 375 QQKLELSKDILKEKFIQLND 394


>sp|P20310|CADHN_XENLA Neural cadherin-1 OS=Xenopus laevis PE=2 SV=1
          Length = 905

 Score = 32.3 bits (72), Expect = 6.4,   Method: Compositional matrix adjust.
 Identities = 26/102 (25%), Positives = 42/102 (41%), Gaps = 5/102 (4%)

Query: 79  LKDHIIQMTPTYDPNGKTVTTGSADTETSTTVMASQIWRKNGSCPEGTIPVRRIHNSNSF 138
           L+ H + +      N   +     D   +      QIW  NGS PEG+ P   +    + 
Sbjct: 236 LRAHAVDVNGNQVENPIDIVINVIDMNDNRPEFLHQIW--NGSIPEGSKPGTYVMTVTAI 293

Query: 139 EGYGRKQPSFYHRVKQLND---IKQPNLQQPNHSKAILLTVG 177
           +G   KQP+   R K L+    I  PN+   N+    ++T+ 
Sbjct: 294 DGDDPKQPNGMLRYKILSQTPAISSPNMFTINNETGDIITLA 335


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.317    0.137    0.434 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 173,335,204
Number of Sequences: 539616
Number of extensions: 7702912
Number of successful extensions: 15105
Number of sequences better than 100.0: 16
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 16
Number of HSP's that attempted gapping in prelim test: 15103
Number of HSP's gapped (non-prelim): 18
length of query: 416
length of database: 191,569,459
effective HSP length: 120
effective length of query: 296
effective length of database: 126,815,539
effective search space: 37537399544
effective search space used: 37537399544
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 62 (28.5 bits)