Query         040199
Match_columns 502
No_of_seqs    195 out of 2663
Neff          11.2
Searched_HMMs 46136
Date          Fri Mar 29 06:04:52 2013
Command       hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040199.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/040199hhsearch_cdd -cpu 12 -v 0 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 PLN02426 cytochrome P450, fami 100.0 3.5E-80 7.5E-85  602.1  51.5  485   17-501    14-500 (502)
  2 KOG0156 Cytochrome P450 CYP2 s 100.0   4E-76 8.6E-81  558.0  43.9  449   40-501    23-488 (489)
  3 KOG0158 Cytochrome P450 CYP3/C 100.0 9.6E-76 2.1E-80  546.0  44.2  447   42-501    30-499 (499)
  4 KOG0157 Cytochrome P450 CYP4/C 100.0 4.8E-74   1E-78  556.2  45.6  449   43-502    35-497 (497)
  5 PLN02169 fatty acid (omega-1)- 100.0 2.5E-73 5.4E-78  555.1  50.0  454   34-500    22-499 (500)
  6 PLN03195 fatty acid omega-hydr 100.0 1.9E-73 4.1E-78  561.7  46.8  449   44-501    31-516 (516)
  7 PLN02971 tryptophan N-hydroxyl 100.0 1.7E-71 3.7E-76  548.3  46.4  450   43-500    57-533 (543)
  8 PLN02290 cytokinin trans-hydro 100.0 9.4E-71   2E-75  543.0  45.7  438   43-501    42-515 (516)
  9 PTZ00404 cytochrome P450; Prov 100.0 4.3E-71 9.3E-76  541.3  41.1  444   41-500    27-482 (482)
 10 KOG0159 Cytochrome P450 CYP11/ 100.0 1.7E-70 3.7E-75  498.2  38.7  446   44-502    51-519 (519)
 11 PLN03234 cytochrome P450 83B1; 100.0 1.1E-69 2.3E-74  533.8  45.6  448   43-500    28-498 (499)
 12 PLN00168 Cytochrome P450; Prov 100.0 2.2E-69 4.8E-74  532.1  46.9  445   43-502    35-518 (519)
 13 PLN02500 cytochrome P450 90B1  100.0 2.5E-70 5.5E-75  536.0  39.2  429   42-499    37-488 (490)
 14 PLN02687 flavonoid 3'-monooxyg 100.0 2.4E-69 5.2E-74  531.6  45.2  447   44-501    35-509 (517)
 15 PLN00110 flavonoid 3',5'-hydro 100.0 2.6E-69 5.6E-74  528.0  43.4  448   42-501    30-497 (504)
 16 PLN02394 trans-cinnamate 4-mon 100.0 5.5E-69 1.2E-73  529.2  46.0  458   35-501    22-502 (503)
 17 PLN02183 ferulate 5-hydroxylas 100.0 2.9E-69 6.3E-74  530.9  43.4  444   37-500    30-511 (516)
 18 PLN02966 cytochrome P450 83A1  100.0 9.9E-69 2.1E-73  525.8  44.3  455   36-501    22-498 (502)
 19 PLN02738 carotene beta-ring hy 100.0 2.1E-68 4.6E-73  527.2  46.0  427   61-501   149-595 (633)
 20 PLN03112 cytochrome P450 famil 100.0 4.9E-68 1.1E-72  523.5  43.8  448   44-501    33-508 (514)
 21 PLN02774 brassinosteroid-6-oxi 100.0 4.3E-68 9.4E-73  516.0  40.7  425   40-499    28-462 (463)
 22 PLN02655 ent-kaurene oxidase   100.0   3E-67 6.6E-72  510.5  45.6  445   45-502     1-465 (466)
 23 PLN02936 epsilon-ring hydroxyl 100.0 3.2E-67   7E-72  512.4  45.7  445   44-501    13-482 (489)
 24 PLN02196 abscisic acid 8'-hydr 100.0 2.1E-67 4.6E-72  510.6  40.9  420   44-500    36-462 (463)
 25 PLN03018 homomethionine N-hydr 100.0 7.1E-66 1.5E-70  504.2  49.2  451   44-501    41-524 (534)
 26 PF00067 p450:  Cytochrome P450 100.0 8.6E-68 1.9E-72  520.7  30.9  443   45-497     1-463 (463)
 27 PLN03141 3-epi-6-deoxocathaste 100.0 1.7E-66 3.7E-71  503.7  39.1  427   41-502     5-451 (452)
 28 PLN02987 Cytochrome P450, fami 100.0 5.1E-65 1.1E-69  491.8  42.7  425   44-501    31-469 (472)
 29 PLN02302 ent-kaurenoic acid ox 100.0 3.4E-64 7.3E-69  495.3  45.0  426   43-502    42-489 (490)
 30 KOG0684 Cytochrome P450 [Secon 100.0 4.7E-64   1E-68  444.5  36.8  430   51-501    40-485 (486)
 31 PLN02648 allene oxide synthase 100.0 4.6E-54 9.9E-59  412.1  34.3  403   44-476    18-463 (480)
 32 COG2124 CypX Cytochrome P450 [ 100.0 1.9E-52 4.2E-57  396.6  31.5  351   88-500    50-410 (411)
 33 PF12554 MOZART1:  Mitotic-spin  74.6      11 0.00023   23.3   4.4   42  295-336     6-47  (48)
 34 PF12273 RCR:  Chitin synthesis  58.7      10 0.00023   29.6   2.9   17   26-42     11-27  (130)
 35 PF05393 Hum_adeno_E3A:  Human   58.2      21 0.00045   25.0   3.8   10   46-55     62-71  (94)
 36 PF07886 BA14K:  BA14K-like pro  54.5      10 0.00023   20.8   1.5   16  433-448    16-31  (31)
 37 PF08492 SRP72:  SRP72 RNA-bind  53.8       9  0.0002   24.8   1.4    7  419-425    44-50  (59)
 38 PF12508 DUF3714:  Protein of u  48.7     4.6  0.0001   34.0  -0.6   43  355-399    52-94  (200)
 39 PF05952 ComX:  Bacillus compet  45.7      11 0.00023   24.3   0.8   25  317-341     4-28  (57)
 40 PF06084 Cytomega_TRL10:  Cytom  40.3      18 0.00039   26.5   1.4    9    5-13     56-64  (150)
 41 PF09201 SRX:  SRX;  InterPro:   29.3      49  0.0011   25.7   2.3   23  445-467    18-40  (148)
 42 TIGR03779 Bac_Flav_CT_M Bacter  28.6      12 0.00026   35.5  -1.3   44  355-400   255-298 (410)
 43 COG2071 Predicted glutamine am  28.1      35 0.00075   29.6   1.5   55  353-422    27-92  (243)
 44 PF07849 DUF1641:  Protein of u  28.1      67  0.0015   19.1   2.3   19  315-333    12-30  (42)
 45 PF13993 YccJ:  YccJ-like prote  27.6      93   0.002   20.1   2.9   31  305-335     8-39  (69)
 46 PF12444 Sox_N:  Sox developmen  25.6      52  0.0011   23.2   1.7   19  456-474    61-79  (84)
 47 PF05393 Hum_adeno_E3A:  Human   25.3 2.3E+02   0.005   20.1   4.6   16   26-41     45-60  (94)
 48 PF12273 RCR:  Chitin synthesis  23.2      71  0.0015   24.9   2.3   19   27-45      9-27  (130)
 49 PRK13713 conjugal transfer pro  22.6 3.5E+02  0.0076   20.6   7.9   30  260-289     5-38  (118)
 50 KOG3506 40S ribosomal protein   22.3      40 0.00088   21.2   0.6   10  439-448    13-22  (56)
 51 PF14483 Cut8_M:  Cut8 dimerisa  21.9 1.3E+02  0.0029   17.5   2.6   20  315-334    15-35  (38)
 52 PF08780 NTase_sub_bind:  Nucle  21.6 3.5E+02  0.0077   20.8   5.8   36  117-153    65-103 (124)
 53 PRK13467 F0F1 ATP synthase sub  21.4 1.4E+02  0.0031   20.0   3.0   25  311-335    19-43  (66)
 54 PF05568 ASFV_J13L:  African sw  20.6 1.7E+02  0.0036   22.9   3.7   19   20-38     33-51  (189)
 55 PF11808 DUF3329:  Domain of un  20.4 3.3E+02  0.0073   19.5   5.5   24   51-74     63-86  (90)
 56 PF08285 DPM3:  Dolichol-phosph  20.2 1.4E+02  0.0031   21.5   3.1   28  312-339    53-80  (91)
 57 PHA00728 hypothetical protein   20.1      56  0.0012   24.4   1.1   27  389-415    56-91  (151)

No 1  
>PLN02426 cytochrome P450, family 94, subfamily C protein
Probab=100.00  E-value=3.5e-80  Score=602.05  Aligned_cols=485  Identities=77%  Similarity=1.306  Sum_probs=408.5

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCcccchhhhccccchhHHHHHHHHhCCCceEEEeeeCeEEecChhh
Q 040199           17 TLSFMFFTFTILFFLFSLLIFVLRLKPWCQCDACRSYLTFSWLKDFNNLCDWYTHLLAKSPTGTIHLHVLGNTITSNPGN   96 (502)
Q Consensus        17 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~P~~~p~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvv~~p~~   96 (502)
                      .+.+.++.+.++..++.+++|+.++|++.++.....++.|.+...+.+++++|.++.+++|+.+++++..+.++++||+.
T Consensus        14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~~dpe~   93 (502)
T PLN02426         14 SFAFVFFFFTICFSAFALLLLLLRLKPWCNCEVCRAYLTASWAKDFDNLCDWYAHLLRRSPTGTIHVHVLGNTITANPEN   93 (502)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCCCCccHHHHHhcccHHHHHHHHHHhCCCcEEEEecCCcEEecCHHH
Confidence            37777788888888888888999998888776666777788888788899999999999987788888777899999999


Q ss_pred             HHHHhccCCCCCCCCchhhHhhhhccCCcccccCChhHHHHHhhhccccchhhHHHHHHHHHHHHHHHhHHHHHHHhccC
Q 040199           97 VEYILKTRFDNYPKGKPFSVILGDLLGRGIFNVDGDSWEFQRKMACFELGSFNIKMYALELVTAEIRSRLIPLLSSAANK  176 (502)
Q Consensus        97 ~~~i~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~g~~w~~~R~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~  176 (502)
                      +++++..+...|+++.++...+.+..|.|+++.+|+.|+++||.+++.|+..+++.+..+.+.++..+.+.+.+++.++.
T Consensus        94 i~~vl~~~~~~~~k~~~~~~~~~~~~g~gi~~~~g~~wk~~Rk~l~~~fs~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~  173 (502)
T PLN02426         94 VEYMLKTRFDNYPKGKPFSAILGDLLGRGIFNVDGDSWRFQRKMASLELGSVSIRSYAFEIVASEIESRLLPLLSSAADD  173 (502)
T ss_pred             HHHHHhhChhcCCCcHhHHHHHHHhcCCceeecCcHHHHHHHHHhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence            99999987678988877666666677899999999999999999999999988888753567777777788888765432


Q ss_pred             C-CCceeHHHHHHHHHHHHhhhhhcCCCCcccccCCCcchHHHHHHHHHHHHHHhhhCCCchhHHHHHhcccchHHHHHH
Q 040199          177 D-NNILDLQDVFRRFSFDSICKFSFGLDPECLMLNLPVSKFATAFDLASKLSAERALAPSPIVWKIKRLLNIGSEKQLKG  255 (502)
Q Consensus       177 ~-~~~vdl~~~~~~~~~~~i~~~~fG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~  255 (502)
                      + ++++|+.+++.++++|+++.++||.++++.+......++.++++............+.++.|++..+++.+..++..+
T Consensus       174 ~~~~~vd~~~~~~~~t~dvi~~~~fG~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  253 (502)
T PLN02426        174 GEGAVLDLQDVFRRFSFDNICKFSFGLDPGCLELSLPISEFADAFDTASKLSAERAMAASPLLWKIKRLLNIGSERKLKE  253 (502)
T ss_pred             CCCceEcHHHHHHHHHHHHHHHHHhCCCCcccCCCCCccHHHHHHHHHHHHHHHHHhcchhHHHHHHHhcccchhHHHHH
Confidence            2 257999999999999999999999998776543334567776666544433333444456666665555455567788


Q ss_pred             HHHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHhccCChHHHHHHHHHHHHhchhchHhHHHHHHHHHhcCcHHHHHHHHH
Q 040199          256 AINLVNELAETMIHQRQQMGFSKKNDLLSRFMASIDDDKYLRDIVVSFLLAGRDTVASGLTSFFWLLSQHPEVESAIRNE  335 (502)
Q Consensus       256 ~~~~~~~~~~~~i~~~~~~~~~~~~dll~~ll~~~~~~~~i~~~~~~~~~ag~~tt~~~l~~~l~~L~~~p~~q~~lr~E  335 (502)
                      +.+.+.+++.++|+++++.+.....|+++.+++...+++++.+++.++++||+|||+++++|++++|++||++|+|||+|
T Consensus       254 ~~~~~~~~~~~~I~~r~~~~~~~~~dll~~ll~~~~~~~~l~~~~~~~l~AG~dTta~~l~~~l~~L~~~P~v~~kl~~E  333 (502)
T PLN02426        254 AIKLVDELAAEVIRQRRKLGFSASKDLLSRFMASINDDKYLRDIVVSFLLAGRDTVASALTSFFWLLSKHPEVASAIREE  333 (502)
T ss_pred             HHHHHHHHHHHHHHHHHhcccCCcchHHHHHHhcCCCHHHHHHHHHHHHHhccchHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence            89999999999999988754345679999999987788999999999999999999999999999999999999999999


Q ss_pred             HHhhcCCCCCCCCHHhhccChhHHHHHhhhcCCCCCCcCCccccccCcccCCCeeeCCCCEEEEcccccccCCcCcCCCC
Q 040199          336 SDKIMKPNQDLVSFEQLRELHYLNAAVYESMRLFPPVQFDSKFAQEDDILPDGTFVRKGTRVTYHPYAMGRMERIWGPDC  415 (502)
Q Consensus       336 i~~~~~~~~~~~~~~~l~~lp~l~a~i~E~lRl~p~~~~~~r~~~~~~~~~~g~~ipkGt~v~~~~~~~~~d~~~~g~~p  415 (502)
                      |+++++.+...++++++++||||+|||+|+||++|++|...|++.+|+++++||.|||||.|.++.+++||||++||+||
T Consensus       334 i~~~~~~~~~~~t~~~l~~LpYl~avi~EtLRl~p~v~~~~r~~~~d~~~~~G~~Ip~Gt~V~~~~~~~~rd~~~~G~dp  413 (502)
T PLN02426        334 ADRVMGPNQEAASFEEMKEMHYLHAALYESMRLFPPVQFDSKFAAEDDVLPDGTFVAKGTRVTYHPYAMGRMERIWGPDC  413 (502)
T ss_pred             HHHhhCCCCCCCCHHHHhcChHHHHHHHHHHhCCCCCCCcceeeccCCCcCCCcEECCCCEEEEchHHhcCCccccCcCh
Confidence            99998865556899999999999999999999999999988999999888899999999999999999999999999999


Q ss_pred             CCCCCCcccCCCCCCCCCCCCCCCCCCCcccCccHHHHHHHHHHHHHHHhhcceEEecCCC-CCCccccceeeeccCCee
Q 040199          416 LEFKPQRWLRNGRFVPENPFKYPVFQAGHRVCLGKDIALVEMKSVALAVVRKFNIRVSDPN-QAPRFAPGLTATVRGGLP  494 (502)
Q Consensus       416 ~~F~P~Rfl~~~~~~~~~~~~~~~Fg~G~r~C~G~~~a~~~~~~~l~~ll~~f~~~~~~~~-~~~~~~~~~~~~~~~~~~  494 (502)
                      ++|+||||++++.....++..++|||+|+|.|+|+++|++|++++++.++++|+++++++. +.+....+.+..|++|++
T Consensus       414 ~~F~PeRwl~~~~~~~~~~~~~~pFg~G~R~CiG~~~A~~e~~~~la~ll~~f~~~~~~~~~~~~~~~~~~~~~~~~gl~  493 (502)
T PLN02426        414 LEFKPERWLKNGVFVPENPFKYPVFQAGLRVCLGKEMALMEMKSVAVAVVRRFDIEVVGRSNRAPRFAPGLTATVRGGLP  493 (502)
T ss_pred             hhcCccccCCCCCcCCCCCcccCCCCCCCCCCccHHHHHHHHHHHHHHHHHHceEEEecCCCCCCcccceeEEecCCCEE
Confidence            9999999997543223345678999999999999999999999999999999999996543 233555678899999999


Q ss_pred             EEEEEcC
Q 040199          495 VMVQERG  501 (502)
Q Consensus       495 v~~~~r~  501 (502)
                      |++++|.
T Consensus       494 v~~~~r~  500 (502)
T PLN02426        494 VRVRERV  500 (502)
T ss_pred             EEEEEcc
Confidence            9999985


No 2  
>KOG0156 consensus Cytochrome P450 CYP2 subfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00  E-value=4e-76  Score=557.99  Aligned_cols=449  Identities=23%  Similarity=0.295  Sum_probs=348.8

Q ss_pred             hcCCCCCCCCCCcccchhhhccccchhHHHHHHHHhCCCceEEEeeeC--eEEecChhhHHHHhccCCCCCCCCchhhHh
Q 040199           40 RLKPWCQCDACRSYLTFSWLKDFNNLCDWYTHLLAKSPTGTIHLHVLG--NTITSNPGNVEYILKTRFDNYPKGKPFSVI  117 (502)
Q Consensus        40 ~~~~~~~~P~~~p~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~vvv~~p~~~~~i~~~~~~~~~~~~~~~~~  117 (502)
                      +++++||||.++|+||+.++......|+.+.+++++||. ++.++.+.  +|||+|+++++|++.+++..|+.++.....
T Consensus        23 ~~~~lPPGP~~lPiIGnl~~l~~~~~h~~~~~ls~~yGp-i~tl~lG~~~~Vviss~~~akE~l~~~d~~fa~Rp~~~~~  101 (489)
T KOG0156|consen   23 KRRNLPPGPPPLPIIGNLHQLGSLPPHRSFRKLSKKYGP-VFTLRLGSVPVVVISSYEAAKEVLVKQDLEFADRPDPTAT  101 (489)
T ss_pred             CCCCCCcCCCCCCccccHHHcCCCchhHHHHHHHHHhCC-eEEEEecCceEEEECCHHHHHHHHHhCCccccCCCCchhh
Confidence            345699999999999866555555699999999999986 77777666  899999999999999998999866642222


Q ss_pred             hhhcc--CCccccc-CChhHHHHHhhhcccc-chhhHHHHHHHHHHHHHHHhHHHHHHHhccCCCCceeHHHHHHHHHHH
Q 040199          118 LGDLL--GRGIFNV-DGDSWEFQRKMACFEL-GSFNIKMYALELVTAEIRSRLIPLLSSAANKDNNILDLQDVFRRFSFD  193 (502)
Q Consensus       118 ~~~~~--g~~i~~~-~g~~w~~~R~~~~~~~-~~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~vdl~~~~~~~~~~  193 (502)
                      ...+.  +.|++.+ +|+.||++||+....+ +...+++.. +...+|+ +.+.+.+.+ ...+ ++||+...+..++.+
T Consensus       102 ~~~~~~~~~~i~~a~yG~~Wr~~Rr~~~~~L~~~~~~~~~~-~~R~~E~-~~l~~~l~~-~~~~-~~vdl~~~l~~~~~n  177 (489)
T KOG0156|consen  102 LKYLSYGGKGIVFAPYGDYWREMRRFALTELRSFGRGKSFM-EIREEEV-DELVKKLSK-SKKG-EPVDLSELLDLLVGN  177 (489)
T ss_pred             HHHhcCCCCceEeCCCcHHHHHHHHHHHHHhcChhhhhhhH-HHHHHHH-HHHHHHHHh-cCCC-ceeeHHHHHHHHHHH
Confidence            22232  3466666 8999999999776555 666666664 4444444 566777766 3444 799999999999999


Q ss_pred             HhhhhhcCCCCcccccCCCcchHHHHHHHHHHHHHHh-hhCCCc-hhHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHH
Q 040199          194 SICKFSFGLDPECLMLNLPVSKFATAFDLASKLSAER-ALAPSP-IVWKIKRLLNIGSEKQLKGAINLVNELAETMIHQR  271 (502)
Q Consensus       194 ~i~~~~fG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~  271 (502)
                      +|++++||.+++..+ .....++.+.+.......... ..++.| +.+++.  ...+..++......++..+++++|+++
T Consensus       178 vI~~~~fG~rf~~~~-~~~~~~~~~l~~~~~~~~~~~~~~d~~p~~l~~~~--~~~g~~~~~~~~~~~~~~~~~~~i~eh  254 (489)
T KOG0156|consen  178 VICRMLFGRRFEEED-EEEFLELKELVEESLELLGSFNLSDYFPFLLRWLD--GISGLEKRLKKVSKRLDEFLERIIDEH  254 (489)
T ss_pred             HHHHHHhCCccccCC-chHHHHHHHHHHHHHHHhCCccHHHHhhHHHHhcc--cccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999997542 112234566666555444321 222233 122222  112345666666677999999999998


Q ss_pred             Hhc-CCCCCCcHHHHHHhccC-------ChHHHHHHHHHHHHhchhchHhHHHHHHHHHhcCcHHHHHHHHHHHhhcCCC
Q 040199          272 QQM-GFSKKNDLLSRFMASID-------DDKYLRDIVVSFLLAGRDTVASGLTSFFWLLSQHPEVESAIRNESDKIMKPN  343 (502)
Q Consensus       272 ~~~-~~~~~~dll~~ll~~~~-------~~~~i~~~~~~~~~ag~~tt~~~l~~~l~~L~~~p~~q~~lr~Ei~~~~~~~  343 (502)
                      ++. +.+..+|++|.+++..+       ++++|...+.++++||+|||++|+.|++.+|++||++|+|+++||++++|.+
T Consensus       255 ~~~~~~~~~~D~vD~lL~~~~~~~~~~~t~~~i~~~~~dl~~AGtdTta~Tl~Wa~a~Ll~~Pev~~K~qeEId~vvG~~  334 (489)
T KOG0156|consen  255 REKIGDEEGRDFVDALLKLMKEEKAEGLTDDHLKALILDLFLAGTDTTATTLEWAMAELLNNPEVQKKLQEEIDEVVGKG  334 (489)
T ss_pred             HhhhccCCCCcHHHHHHHhhcccccCCCCHHHHHHHHHHHHhcccchHHHHHHHHHHHHHhCHHHHHHHHHHHHHHhCCC
Confidence            764 11223899999998743       6788999999999999999999999999999999999999999999999988


Q ss_pred             CCCCCHHhhccChhHHHHHhhhcCCCCCCcCCc-cccccCcccCCCeeeCCCCEEEEcccccccCCcCcCCCCCCCCCCc
Q 040199          344 QDLVSFEQLRELHYLNAAVYESMRLFPPVQFDS-KFAQEDDILPDGTFVRKGTRVTYHPYAMGRMERIWGPDCLEFKPQR  422 (502)
Q Consensus       344 ~~~~~~~~l~~lp~l~a~i~E~lRl~p~~~~~~-r~~~~~~~~~~g~~ipkGt~v~~~~~~~~~d~~~~g~~p~~F~P~R  422 (502)
                      .. ++.+|+.+||||+|||+|++|++|++|+.. |.+++|..+ +||.|||||.|+++.|++||||++| +||++|+|||
T Consensus       335 r~-v~e~D~~~lpYL~Avi~E~~Rl~p~~Pl~~ph~~~~d~~i-~Gy~IPkgT~v~vn~~ai~rDp~vw-~dP~eF~PER  411 (489)
T KOG0156|consen  335 RL-VSESDLPKLPYLKAVIKETLRLHPPLPLLLPRETTEDTKI-GGYDIPKGTTVLVNLWAIHRDPKVW-EDPEEFKPER  411 (489)
T ss_pred             CC-CChhhhccCHHHHHHHHHHHhcCCCccccccccccCCeeE-cCEEcCCCCEEEEeehhhhcCCccC-CCccccChhh
Confidence            75 999999999999999999999999999875 666666655 9999999999999999999999999 9999999999


Q ss_pred             ccCCCCCCCCCCCCCCCCCCCcccCccHHHHHHHHHHHHHHHhhcceEEecCCCCCCccccceeeeccCCeeEEEEEcC
Q 040199          423 WLRNGRFVPENPFKYPVFQAGHRVCLGKDIALVEMKSVALAVVRKFNIRVSDPNQAPRFAPGLTATVRGGLPVMVQERG  501 (502)
Q Consensus       423 fl~~~~~~~~~~~~~~~Fg~G~r~C~G~~~a~~~~~~~l~~ll~~f~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~r~  501 (502)
                      |++.+ ..+.....++|||.|+|.|||..+|++++.++++.++++|||+++++....... +.+...+..+.+...+|.
T Consensus       412 Fl~~~-d~~~~~~~~iPFG~GRR~CpG~~La~~~l~l~la~llq~F~w~~~~~~~d~~e~-~~~~~~~~pl~~~~~~r~  488 (489)
T KOG0156|consen  412 FLDSN-DGKGLDFKLIPFGSGRRICPGEGLARAELFLFLANLLQRFDWKLPGGKVDMEEA-GLTLKKKKPLKAVPVPRL  488 (489)
T ss_pred             hcCCc-cccCCceEecCCCCCcCCCCcHHHHHHHHHHHHHHHHheeeeecCCCCCCCccc-ccceecCCcceeeeecCC
Confidence            99864 112256789999999999999999999999999999999999998762122212 255555556666666654


No 3  
>KOG0158 consensus Cytochrome P450 CYP3/CYP5/CYP6/CYP9 subfamilies [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00  E-value=9.6e-76  Score=546.05  Aligned_cols=447  Identities=23%  Similarity=0.352  Sum_probs=346.1

Q ss_pred             CCCCCCCCCCcccchhhhccc-cchhHHHHHHHHhCCCceEEEee--eCeEEecChhhHHHHhccCCCCCCCCc--hhhH
Q 040199           42 KPWCQCDACRSYLTFSWLKDF-NNLCDWYTHLLAKSPTGTIHLHV--LGNTITSNPGNVEYILKTRFDNYPKGK--PFSV  116 (502)
Q Consensus        42 ~~~~~~P~~~p~ig~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~--~~~vvv~~p~~~~~i~~~~~~~~~~~~--~~~~  116 (502)
                      ++.-++|.+.|++|+...... +.......+...+++ .++.+..  .+.++|+||+.+++|+.++.++|..+.  ....
T Consensus        30 rrGi~~~~p~p~~Gn~~~~~~~~~~~~~~~~~~~~~~-~~~G~y~~~~p~l~v~D~elik~I~ik~F~~F~~r~~~~~~d  108 (499)
T KOG0158|consen   30 RRGIPGPKPLPFLGNLPGMLKRERPGDLLLDIYTKYR-PVVGIYEGRQPALLVSDPELIKEILIKDFDNFYNRKRPIYGD  108 (499)
T ss_pred             cCCCCCCCCCCcEecHHHHHhccCcHHHHHHHHhcCC-CEEEEEecCCcceEecCHHHHHHHHHHhCccCcCCCCCCcCC
Confidence            346677777898885433222 112333333333332 3555443  348999999999999999989998632  2221


Q ss_pred             hhhhccCCcccccCChhHHHHHhhhccccchhhHHHHHHHHHHHHHHHhHHHHHHHhccCCCCceeHHHHHHHHHHHHhh
Q 040199          117 ILGDLLGRGIFNVDGDSWEFQRKMACFELGSFNIKMYALELVTAEIRSRLIPLLSSAANKDNNILDLQDVFRRFSFDSIC  196 (502)
Q Consensus       117 ~~~~~~g~~i~~~~g~~w~~~R~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~vdl~~~~~~~~~~~i~  196 (502)
                      -...+...+++..+|++||++|..++|.|++.+++++.  ..++++.+.+.+.+++....+ ..+++.+++.+++.|+|+
T Consensus       109 ~~~~l~~~~Lf~~~g~~WK~lR~~lsP~Fts~kmk~m~--~t~~~~~~~l~~~l~~~~~~~-~~~~~~dl~~~yT~DVI~  185 (499)
T KOG0158|consen  109 PEDPLSALNLFFLRGERWKRLRTKLSPTFTSGKLKKMF--PTMEEVGDELVRHLRRKSEGG-QEGEIKDLCARYTTDVIG  185 (499)
T ss_pred             CCCcccccCchhccCchHHHHHHhhccccchhhHHHHH--HHHHHHHHHHHHHHHHhhccc-CCccHHHHHHHHHHHHHh
Confidence            11123346799999999999999999999999999885  455666788999998866544 578899999999999999


Q ss_pred             hhhcCCCCcccccCCCcchHHHHHHHHHHH-HHHhhh--CCCchhHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHh
Q 040199          197 KFSFGLDPECLMLNLPVSKFATAFDLASKL-SAERAL--APSPIVWKIKRLLNIGSEKQLKGAINLVNELAETMIHQRQQ  273 (502)
Q Consensus       197 ~~~fG~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~--~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~  273 (502)
                      +++||.+.++..+  ....|.......... ......  ......+.+...+.  .........+.+.+.+...++.|.+
T Consensus       186 ~~AfG~~~~s~~d--~~~~F~~~~~~~~~~~~~~~~l~~~~~~~~p~l~~~l~--~~~~~~~~~~~~~~~v~~~v~~R~~  261 (499)
T KOG0158|consen  186 SCAFGLDANSLRD--PKAEFRRMGRRAFFLSRGLFPLKFMLIFLFPKLALPLR--VKLFPEDVTDFFRKLVNSRVEQREK  261 (499)
T ss_pred             HhhcccchhhhcC--chHHHHHhhHHHHHHhhccchHhHhHHHHhHHHHHhhh--cccChHHHHHHHHHHHHHHHHHHHh
Confidence            9999998877652  234454433332222 111110  00011122222211  1122345667777788888887744


Q ss_pred             cCCCCCCcHHHHHHhccC------------ChHHHHHHHHHHHHhchhchHhHHHHHHHHHhcCcHHHHHHHHHHHhhcC
Q 040199          274 MGFSKKNDLLSRFMASID------------DDKYLRDIVVSFLLAGRDTVASGLTSFFWLLSQHPEVESAIRNESDKIMK  341 (502)
Q Consensus       274 ~~~~~~~dll~~ll~~~~------------~~~~i~~~~~~~~~ag~~tt~~~l~~~l~~L~~~p~~q~~lr~Ei~~~~~  341 (502)
                      .+ ..+.|+++.+++...            +.++|+++++.+++||.||||++|++++|+||+|||+|+|||+||++++.
T Consensus       262 ~~-~~r~Dfi~lll~~~~~~~~~~~~~~~lt~dei~aQafvFl~AGfeTts~tlsf~lYeLA~~PdvQ~kLreEI~~~~~  340 (499)
T KOG0158|consen  262 EN-IERNDFIDLLLDARASDFAKSKSHKALTDDEIAAQAFVFLLAGFETTASTLSFALYELAKNPDVQDKLREEIDEVLE  340 (499)
T ss_pred             cC-CCCchHHHHHHHhhcccccccccccccCHHHHHHHHHHHHHhhhHhHHHHHHHHHHHHhcChHHHHHHHHHHHHHhc
Confidence            33 578899999998762            58999999999999999999999999999999999999999999999987


Q ss_pred             CCCCCCCHHhhccChhHHHHHhhhcCCCCCCcCCccccccCcccCCCeeeCCCCEEEEcccccccCCcCcCCCCCCCCCC
Q 040199          342 PNQDLVSFEQLRELHYLNAAVYESMRLFPPVQFDSKFAQEDDILPDGTFVRKGTRVTYHPYAMGRMERIWGPDCLEFKPQ  421 (502)
Q Consensus       342 ~~~~~~~~~~l~~lp~l~a~i~E~lRl~p~~~~~~r~~~~~~~~~~g~~ipkGt~v~~~~~~~~~d~~~~g~~p~~F~P~  421 (502)
                      +..+ +++|.+.+|+||++||+||||+||+++...|.|++|.++.+++.||||+.|.++.+++||||++| |||++|+||
T Consensus       341 ~~~~-ltyd~l~~L~YLd~Vi~ETLR~yP~~~~~~R~C~k~~~i~~~~~i~kG~~V~Ip~~alH~Dp~~~-p~Pe~F~PE  418 (499)
T KOG0158|consen  341 EKEG-LTYDSLSKLKYLDMVIKETLRLYPPAPFLNRECTKDYEIPGGFVIPKGTPVMIPTYALHHDPEYW-PEPEKFKPE  418 (499)
T ss_pred             ccCC-CCHHHHhCCcHHHHHHHHHHhhCCCcccccceecCceecCCCeEeCCCCEEEeecccccCCcccC-CCcccCCCc
Confidence            7665 99999999999999999999999999998899999999944999999999999999999999999 999999999


Q ss_pred             cccCCCCCCCCCCCCCCCCCCCcccCccHHHHHHHHHHHHHHHhhcceEEecCCCCCCcccc---ceeeeccCCeeEEEE
Q 040199          422 RWLRNGRFVPENPFKYPVFQAGHRVCLGKDIALVEMKSVALAVVRKFNIRVSDPNQAPRFAP---GLTATVRGGLPVMVQ  498 (502)
Q Consensus       422 Rfl~~~~~~~~~~~~~~~Fg~G~r~C~G~~~a~~~~~~~l~~ll~~f~~~~~~~~~~~~~~~---~~~~~~~~~~~v~~~  498 (502)
                      ||++.+.. ..++..|+|||.|||+|+|.+||++|+|++|++||++|+++.++.+..+ ...   ++++.|++|++++++
T Consensus       419 RF~~~~~~-~~~~~~ylPFG~GPR~CIGmRfa~mq~K~~L~~lL~~f~~~~~~~t~~~-~~~~~~~~~l~pk~gi~Lkl~  496 (499)
T KOG0158|consen  419 RFEEENNK-SRHPGAYLPFGVGPRNCIGMRFALMEAKLALAHLLRNFSFEVCPTTIIP-LEGDPKGFTLSPKGGIWLKLE  496 (499)
T ss_pred             cCCCCccc-ccCCccccCCCCCccccHHHHHHHHHHHHHHHHHHhhCEEecCCcccCc-ccCCccceeeecCCceEEEEE
Confidence            99976543 4577899999999999999999999999999999999999999854444 444   688999999999999


Q ss_pred             EcC
Q 040199          499 ERG  501 (502)
Q Consensus       499 ~r~  501 (502)
                      +|+
T Consensus       497 ~r~  499 (499)
T KOG0158|consen  497 PRD  499 (499)
T ss_pred             eCC
Confidence            985


No 4  
>KOG0157 consensus Cytochrome P450 CYP4/CYP19/CYP26 subfamilies [Secondary metabolites biosynthesis, transport and catabolism; Lipid transport and metabolism]
Probab=100.00  E-value=4.8e-74  Score=556.15  Aligned_cols=449  Identities=32%  Similarity=0.513  Sum_probs=367.2

Q ss_pred             CCCCCCCCCcccchhhhccc--cchhHHHHHHHHhCCCceEEEeeeC--eEEecChhhHHHHhccCCCCCCCCchhhHhh
Q 040199           43 PWCQCDACRSYLTFSWLKDF--NNLCDWYTHLLAKSPTGTIHLHVLG--NTITSNPGNVEYILKTRFDNYPKGKPFSVIL  118 (502)
Q Consensus        43 ~~~~~P~~~p~ig~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~--~vvv~~p~~~~~i~~~~~~~~~~~~~~~~~~  118 (502)
                      ..++||.++|++|+......  .+...+..++..+|+ .++..+.+|  +++++||+.+++|+.++...+.+...+...+
T Consensus        35 ~~~~gp~~~P~iG~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~v~~~dp~~~~~Il~~~~~~~~k~~~~~~~~  113 (497)
T KOG0157|consen   35 KLPPGPPGWPLIGNLLEFLKPLEEILDFVTELLSRYG-PIFKTWLGGKPTVVTTDPELIEEILKSSNENYPKGPDYPESL  113 (497)
T ss_pred             ccCCCCCCCCcccchHHhhcchhHHHHHHHHHHHHcC-chhhhhhcCeeEEEEcCHHHHHHHHhcCcccCCCchhHHHHH
Confidence            47899999999995444422  578888999999997 377777777  8999999999999976657788888888888


Q ss_pred             hhccCCcccccCChhHHHHHhhhccccchhhHHHHHHHHHHHHHHHhHHHHHHHhccCCCCceeHHHHHHHHHHHHhhhh
Q 040199          119 GDLLGRGIFNVDGDSWEFQRKMACFELGSFNIKMYALELVTAEIRSRLIPLLSSAANKDNNILDLQDVFRRFSFDSICKF  198 (502)
Q Consensus       119 ~~~~g~~i~~~~g~~w~~~R~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~vdl~~~~~~~~~~~i~~~  198 (502)
                      .+++|.|+++++|++|+.+||++.++|+...++.+. ..+.+.... +...++.... + +.+|+++.+.++++|+++..
T Consensus       114 ~~~lG~gll~~~g~~W~~~Rk~~~~~f~~~~L~~~~-~~~~~~~~~-~~~~~~~~~~-~-~~vd~~~~~~~~tld~i~~~  189 (497)
T KOG0157|consen  114 KPWLGDGLLFSDGEKWHKHRKLLTPAFHFEILKSFV-PVFIESSLI-LLLLLELAAS-G-EEVDLQDLLKRLTLDIICKT  189 (497)
T ss_pred             HHHhcCccccCCchHHHHHHhhccHhhhHHHHHHHH-HHHHHHHHH-HHHHHHHhhc-C-CeEcHHHHHHHHHHHHHHHH
Confidence            899999999999999999999999999999999987 555555544 3444444222 2 23999999999999999999


Q ss_pred             hcCCCCcccccCCCcchHHHHHHHHHHHHHHhhhCCCchhHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHhc----
Q 040199          199 SFGLDPECLMLNLPVSKFATAFDLASKLSAERALAPSPIVWKIKRLLNIGSEKQLKGAINLVNELAETMIHQRQQM----  274 (502)
Q Consensus       199 ~fG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~----  274 (502)
                      +||... .........++.+++.............+.    +...+...+..++..++.+.+.++++++|++|++.    
T Consensus       190 ~~G~~~-~~~~~~~~~~~~~a~~~~~~~~~~~~~~p~----~~~~~~~~~~~~~~~~a~~~~~~~~~~iI~~rr~~~~~~  264 (497)
T KOG0157|consen  190 AMGPES-LDAEGPELFEYVQAFDDLTELISKRINLPL----GTKFLYGLKSERKLKKARKILHDFLEKIIRERREELEKE  264 (497)
T ss_pred             hcCCcc-ccccCCcccHHHHHHHHHHHHHHHHHcCch----hhhHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            999222 112223446778888776666655544442    22222222356788899999999999999988853    


Q ss_pred             CC---CCCCcHHHHHHhc---cCChHHHHHHHHHHHHhchhchHhHHHHHHHHHhcCcHHHHHHHHHHHhhcCCCCCCCC
Q 040199          275 GF---SKKNDLLSRFMAS---IDDDKYLRDIVVSFLLAGRDTVASGLTSFFWLLSQHPEVESAIRNESDKIMKPNQDLVS  348 (502)
Q Consensus       275 ~~---~~~~dll~~ll~~---~~~~~~i~~~~~~~~~ag~~tt~~~l~~~l~~L~~~p~~q~~lr~Ei~~~~~~~~~~~~  348 (502)
                      +.   ....|+++.+...   ..+++++.+++.++++||+|||+++++|+++.|+.||++|+|+++|++++++.+....+
T Consensus       265 ~~~~~~~~~d~L~~~~~~~~~~l~~~~i~d~v~tf~faG~DTTss~ltw~l~~La~hP~vq~k~~eEi~~i~~~~~~~~~  344 (497)
T KOG0157|consen  265 GSGEEKKRLDFLDTLLLEEDKPLTDEDIRDEVDTFMFAGHDTTSSALTWTLWLLAKHPEVQEKLREEVDEILGNRDDKWE  344 (497)
T ss_pred             CCcccchhhhHHHHHHHhccCCCCHHHHHHHHHHheeeccchHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhCCCCCCCC
Confidence            11   3456888853333   23789999999999999999999999999999999999999999999999986543333


Q ss_pred             HHhhccChhHHHHHhhhcCCCCCCcCCccccccCcccCCCeeeCCCCEEEEcccccccCCcCcCCCCCCCCCCcccCCCC
Q 040199          349 FEQLRELHYLNAAVYESMRLFPPVQFDSKFAQEDDILPDGTFVRKGTRVTYHPYAMGRMERIWGPDCLEFKPQRWLRNGR  428 (502)
Q Consensus       349 ~~~l~~lp~l~a~i~E~lRl~p~~~~~~r~~~~~~~~~~g~~ipkGt~v~~~~~~~~~d~~~~g~~p~~F~P~Rfl~~~~  428 (502)
                      ....++|+||++||+||||+|||+|...|.+.+|+++.+||.||||+.|.++++++||||++||+||++||||||++++.
T Consensus       345 ~~~~~~m~yl~~vi~EsLRLyppvp~~~R~~~~d~~l~~g~~IPkG~~V~i~~~~~~r~~~~~~~dp~~F~PeRf~~~~~  424 (497)
T KOG0157|consen  345 VEKLDQMKYLEMVIKESLRLYPPVPLVARKATKDVKLPGGYTIPKGTNVLISIYALHRDPRVWGEDPEEFDPERFLDGEE  424 (497)
T ss_pred             hhhhhhhHHHHHHHHHHhccCCCCchhhcccCCCeEcCCCcEeCCCCEEEEehHHhccCccccCCChhhcCccccCCCCC
Confidence            33334799999999999999999999999999999997799999999999999999999999977999999999997655


Q ss_pred             CCCCCCCCCCCCCCCcccCccHHHHHHHHHHHHHHHhhcceEEecCCCCCCccccceeeeccCCeeEEEEEcCC
Q 040199          429 FVPENPFKYPVFQAGHRVCLGKDIALVEMKSVALAVVRKFNIRVSDPNQAPRFAPGLTATVRGGLPVMVQERGD  502 (502)
Q Consensus       429 ~~~~~~~~~~~Fg~G~r~C~G~~~a~~~~~~~l~~ll~~f~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~r~~  502 (502)
                      ...+++++|+|||+|+|.|+|+++|++|+++++++++++|++++..+.. +......++++..|++|++++|..
T Consensus       425 ~~~~~~~~fipFsaGpR~CiG~~fA~lemKv~l~~ll~~f~~~~~~~~~-~~~~~~~~l~~~~gl~v~~~~r~~  497 (497)
T KOG0157|consen  425 KAKRHPFAFIPFSAGPRNCIGQKFAMLEMKVVLAHLLRRFRIEPVGGDK-PKPVPELTLRPKNGLKVKLRPRGS  497 (497)
T ss_pred             cCCCCCccccCCCCCcccchhHHHHHHHHHHHHHHHHHheEEEecCCCC-ceeeeEEEEEecCCeEEEEEeCCC
Confidence            4456789999999999999999999999999999999999999988654 555678899999999999999963


No 5  
>PLN02169 fatty acid (omega-1)-hydroxylase/midchain alkane hydroxylase
Probab=100.00  E-value=2.5e-73  Score=555.06  Aligned_cols=454  Identities=33%  Similarity=0.600  Sum_probs=350.5

Q ss_pred             HHHHHHhcCCCCCCCCCCcccchhhhc--cccchhHHHHHHHHhCCCceEE---EeeeC--eEEecChhhHHHHhccCCC
Q 040199           34 LLIFVLRLKPWCQCDACRSYLTFSWLK--DFNNLCDWYTHLLAKSPTGTIH---LHVLG--NTITSNPGNVEYILKTRFD  106 (502)
Q Consensus        34 ~~~~~~~~~~~~~~P~~~p~ig~~~~~--~~~~~~~~~~~~~~~~~~~~~~---~~~~~--~vvv~~p~~~~~i~~~~~~  106 (502)
                      .+..+.++++.-|+|.++|++|+....  .....++++.+..+.|+. .+.   .+.++  +++|+||+.+++|+.++..
T Consensus        22 ~~~~~~~~~~~~p~p~~~pl~G~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~g~~~g~~~~vvv~dpe~i~~il~~~~~  100 (500)
T PLN02169         22 TCFFIHKKPHGQPILKNWPFLGMLPGMLHQIPRIYDWTVEVLEASNL-TFYFKGPWLSGTDMLFTADPKNIHHILSSNFG  100 (500)
T ss_pred             HHHHHHhccCCCCCCCCCCcccchHHHHHccCcHHHHHHHHHHhCCC-cEEEEeeccCCCCeEEEcCHHHHHHHHhhCcc
Confidence            333444444466788899999865332  223455666665556763 333   23333  8999999999999998777


Q ss_pred             CCCCCchhhHhhhhccCCcccccCChhHHHHHhhhccccchhhHHHHHHHHHHHHHHHhHHHHHHHhccCCCCceeHHHH
Q 040199          107 NYPKGKPFSVILGDLLGRGIFNVDGDSWEFQRKMACFELGSFNIKMYALELVTAEIRSRLIPLLSSAANKDNNILDLQDV  186 (502)
Q Consensus       107 ~~~~~~~~~~~~~~~~g~~i~~~~g~~w~~~R~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~vdl~~~  186 (502)
                      .|+++..+.. .....|.|++.++|+.||++||++.++|+..++.........++..+.+.+.+++...++ +++|+.+.
T Consensus       101 ~~~k~~~~~~-~~~~~g~gl~~~~g~~Wr~~Rk~l~p~F~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~-~~vd~~~~  178 (500)
T PLN02169        101 NYPKGPEFKK-IFDVLGEGILTVDFELWEDLRKSNHALFHNQDFIELSLSSNKSKLKEGLVPFLDNAAHEN-IIIDLQDV  178 (500)
T ss_pred             cCCCcHHHHH-HHHhhcCcccccCcHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CeEeHHHH
Confidence            7887654433 335568899999999999999999999998877653223445566667778787654444 68999999


Q ss_pred             HHHHHHHHhhhhhcCCCCcccccCCCcchHHHHHHHHHHHHHHhhhCCCch-hHHHHHhcccchHHHHHHHHHHHHHHHH
Q 040199          187 FRRFSFDSICKFSFGLDPECLMLNLPVSKFATAFDLASKLSAERALAPSPI-VWKIKRLLNIGSEKQLKGAINLVNELAE  265 (502)
Q Consensus       187 ~~~~~~~~i~~~~fG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~~~~~~~~~~  265 (502)
                      +.++++|++++++||.+.++.+.......+.+++............  .|+ .+.+..+++.+..++..++.+.+.+++.
T Consensus       179 ~~~~t~dvi~~~~fG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  256 (500)
T PLN02169        179 FMRFMFDTSSILMTGYDPMSLSIEMLEVEFGEAADIGEEAIYYRHF--KPVILWRLQNWIGIGLERKMRTALATVNRMFA  256 (500)
T ss_pred             HHHHHHHHHHhheeCCCccccCCCCCCCHHHHHHHHHHHHHHhHHh--ccHHHHHHHHHhCCchhhHHHHHHHHHHHHHH
Confidence            9999999999999999876543222223555555444332222212  222 2223334433455677888999999999


Q ss_pred             HHHHHHHhcC------CCCCCcHHHHHHhcc---------CChHHHHHHHHHHHHhchhchHhHHHHHHHHHhcCcHHHH
Q 040199          266 TMIHQRQQMG------FSKKNDLLSRFMASI---------DDDKYLRDIVVSFLLAGRDTVASGLTSFFWLLSQHPEVES  330 (502)
Q Consensus       266 ~~i~~~~~~~------~~~~~dll~~ll~~~---------~~~~~i~~~~~~~~~ag~~tt~~~l~~~l~~L~~~p~~q~  330 (502)
                      ++|+++++..      +...+|+++.+++..         .+++++.+++.++++||+|||+++++|++++|++||++|+
T Consensus       257 ~~I~~r~~~~~~~~~~~~~~~d~l~~ll~~~~~~~~~~~~~~~~~i~~~~~~~l~AG~dTTa~tl~w~l~~La~~Pevq~  336 (500)
T PLN02169        257 KIISSRRKEEISRAETEPYSKDALTYYMNVDTSKYKLLKPKKDKFIRDVIFSLVLAGRDTTSSALTWFFWLLSKHPQVMA  336 (500)
T ss_pred             HHHHHHHHHhhccccccCCCcCHHHHHHhccccccccccCCChHHHHHHHHHHHHhchhHHHHHHHHHHHHHHCCHHHHH
Confidence            9998887531      112468999998742         2567899999999999999999999999999999999999


Q ss_pred             HHHHHHHhhcCCCCCCCCHHhhccChhHHHHHhhhcCCCCCCcCCccccccCcccCCCeeeCCCCEEEEcccccccCCcC
Q 040199          331 AIRNESDKIMKPNQDLVSFEQLRELHYLNAAVYESMRLFPPVQFDSKFAQEDDILPDGTFVRKGTRVTYHPYAMGRMERI  410 (502)
Q Consensus       331 ~lr~Ei~~~~~~~~~~~~~~~l~~lp~l~a~i~E~lRl~p~~~~~~r~~~~~~~~~~g~~ipkGt~v~~~~~~~~~d~~~  410 (502)
                      |+++||+++       ++.+++.+||||+|||+||||++|++|...|++.+|+++++||.|||||.|.++.|++||||++
T Consensus       337 kl~~Ei~~v-------~~~~dl~~L~Yl~avi~EtLRl~P~vp~~~r~~~~d~~~~~G~~IpkGt~v~i~~~~ihrd~~~  409 (500)
T PLN02169        337 KIRHEINTK-------FDNEDLEKLVYLHAALSESMRLYPPLPFNHKAPAKPDVLPSGHKVDAESKIVICIYALGRMRSV  409 (500)
T ss_pred             HHHHHHHhh-------CCHHHHhcCHHHHHHHHHHHhcCCCCCcCceecCCCCCccCCEEECCCCEEEEcHHHhhCCccc
Confidence            999999987       4789999999999999999999999999999998898888999999999999999999999999


Q ss_pred             cCCCCCCCCCCcccCCCCC-CCCCCCCCCCCCCCcccCccHHHHHHHHHHHHHHHhhcceEEecCCCCCCccccceeeec
Q 040199          411 WGPDCLEFKPQRWLRNGRF-VPENPFKYPVFQAGHRVCLGKDIALVEMKSVALAVVRKFNIRVSDPNQAPRFAPGLTATV  489 (502)
Q Consensus       411 ~g~~p~~F~P~Rfl~~~~~-~~~~~~~~~~Fg~G~r~C~G~~~a~~~~~~~l~~ll~~f~~~~~~~~~~~~~~~~~~~~~  489 (502)
                      ||+||++|+||||+.++.. ....+..|+|||+|+|+|+|+++|++|+++++++|+++|+++++++. ......+++++|
T Consensus       410 w~~dP~~F~PeRfl~~~~~~~~~~~~~~lPFG~GpR~CiG~~~A~~e~k~~la~ll~~f~~~~~~~~-~~~~~~~~~l~~  488 (500)
T PLN02169        410 WGEDALDFKPERWISDNGGLRHEPSYKFMAFNSGPRTCLGKHLALLQMKIVALEIIKNYDFKVIEGH-KIEAIPSILLRM  488 (500)
T ss_pred             cCCChhhcCccccCCCCCCccCCCCccccCCCCCCCCCcCHHHHHHHHHHHHHHHHHHCEEEEcCCC-CcccccceEEec
Confidence            9889999999999964322 11236789999999999999999999999999999999999997643 234455688899


Q ss_pred             cCCeeEEEEEc
Q 040199          490 RGGLPVMVQER  500 (502)
Q Consensus       490 ~~~~~v~~~~r  500 (502)
                      ++|++|++++|
T Consensus       489 ~~gl~l~l~~~  499 (500)
T PLN02169        489 KHGLKVTVTKK  499 (500)
T ss_pred             CCCEEEEEEeC
Confidence            99999999987


No 6  
>PLN03195 fatty acid omega-hydroxylase; Provisional
Probab=100.00  E-value=1.9e-73  Score=561.71  Aligned_cols=449  Identities=39%  Similarity=0.651  Sum_probs=345.6

Q ss_pred             CCCCCCCCcccchhhhccccchhHHHHHHHHhC---CCceEEEeeeC--eEEecChhhHHHHhccCCCCCCCCchhhHhh
Q 040199           44 WCQCDACRSYLTFSWLKDFNNLCDWYTHLLAKS---PTGTIHLHVLG--NTITSNPGNVEYILKTRFDNYPKGKPFSVIL  118 (502)
Q Consensus        44 ~~~~P~~~p~ig~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~--~vvv~~p~~~~~i~~~~~~~~~~~~~~~~~~  118 (502)
                      .+|+|.++|++|+.+... .+ +..+.++.+.|   + .++.++.++  .++++||+.+++|+.++...|.++..+....
T Consensus        31 ~~pgp~~~p~~G~~~~~~-~~-~~~~~~~~~~~~~~~-~~~~~~~g~~~~v~i~~p~~~~~il~~~~~~~~~~~~~~~~~  107 (516)
T PLN03195         31 NRKGPKSWPIIGAALEQL-KN-YDRMHDWLVEYLSKD-RTVVVKMPFTTYTYIADPVNVEHVLKTNFANYPKGEVYHSYM  107 (516)
T ss_pred             ccCCCCCCCeecchHHHH-hc-cchHHHHHHHHhccC-CcEEEeeCCCCceEecCHHHHHHHHhhCccccCCcHhHHHHH
Confidence            467888899998654322 22 23344455444   3 367776665  8999999999999987656677665444444


Q ss_pred             hhccCCcccccCChhHHHHHhhhccccchhhHHHHHHHHHHHHHHHhHHHHHHHhccCCCCceeHHHHHHHHHHHHhhhh
Q 040199          119 GDLLGRGIFNVDGDSWEFQRKMACFELGSFNIKMYALELVTAEIRSRLIPLLSSAANKDNNILDLQDVFRRFSFDSICKF  198 (502)
Q Consensus       119 ~~~~g~~i~~~~g~~w~~~R~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~vdl~~~~~~~~~~~i~~~  198 (502)
                      ....+.|+++.+|+.|+++|+++++.|+..+++.+. +.+.++..+.+.+.+++....+ +++|+.+++..+++|+++.+
T Consensus       108 ~~~~g~~l~~~~g~~w~~~Rr~l~~~fs~~~l~~~~-~~~~~~~~~~l~~~l~~~~~~~-~~vd~~~~~~~~~~dvi~~~  185 (516)
T PLN03195        108 EVLLGDGIFNVDGELWRKQRKTASFEFASKNLRDFS-TVVFREYSLKLSSILSQASFAN-QVVDMQDLFMRMTLDSICKV  185 (516)
T ss_pred             HHHhcCeeeccCcHHHHHHHHhcchhhhHHHHHHHH-HHHHHHHHHHHHHHHHHHHhcC-CeEcHHHHHHHHHHHHHHHH
Confidence            445677898899999999999999999999998886 6565666677777776543333 57999999999999999999


Q ss_pred             hcCCCCcccccCCCcchHHHHHHHHHHHHHHhhhCCCchhHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHhcC---
Q 040199          199 SFGLDPECLMLNLPVSKFATAFDLASKLSAERALAPSPIVWKIKRLLNIGSEKQLKGAINLVNELAETMIHQRQQMG---  275 (502)
Q Consensus       199 ~fG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~---  275 (502)
                      +||.+++..+.......+.+.++............  + .+.+..+++.+..+...++.+.+.+++.++++++++..   
T Consensus       186 ~fG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--p-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~  262 (516)
T PLN03195        186 GFGVEIGTLSPSLPENPFAQAFDTANIIVTLRFID--P-LWKLKKFLNIGSEALLSKSIKVVDDFTYSVIRRRKAEMDEA  262 (516)
T ss_pred             HhCCCccccccCCCccHHHHHHHHHHHHHHHHHhc--c-hhhHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            99998876543222234555554433222111111  1 22222222222234455677888888888888776421   


Q ss_pred             ----CCCCCcHHHHHHhcc------CChHHHHHHHHHHHHhchhchHhHHHHHHHHHhcCcHHHHHHHHHHHhhcCCC--
Q 040199          276 ----FSKKNDLLSRFMASI------DDDKYLRDIVVSFLLAGRDTVASGLTSFFWLLSQHPEVESAIRNESDKIMKPN--  343 (502)
Q Consensus       276 ----~~~~~dll~~ll~~~------~~~~~i~~~~~~~~~ag~~tt~~~l~~~l~~L~~~p~~q~~lr~Ei~~~~~~~--  343 (502)
                          .....|+++.+++..      .+++++.++++++++||+|||+++++|++++|++||++|+|||+||++++++.  
T Consensus       263 ~~~~~~~~~d~l~~ll~~~~~~~~~l~~~~i~~~~~~ll~AG~dTTa~tl~~~l~~L~~~P~vq~kl~~Ei~~~~~~~~~  342 (516)
T PLN03195        263 RKSGKKVKHDILSRFIELGEDPDSNFTDKSLRDIVLNFVIAGRDTTATTLSWFVYMIMMNPHVAEKLYSELKALEKERAK  342 (516)
T ss_pred             ccccccccccHHHHHHhccCCCCCCCCHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhhcccc
Confidence                123568999999643      26789999999999999999999999999999999999999999999987532  


Q ss_pred             -----------------CCCCCHHhhccChhHHHHHhhhcCCCCCCcCCccccccCcccCCCeeeCCCCEEEEccccccc
Q 040199          344 -----------------QDLVSFEQLRELHYLNAAVYESMRLFPPVQFDSKFAQEDDILPDGTFVRKGTRVTYHPYAMGR  406 (502)
Q Consensus       344 -----------------~~~~~~~~l~~lp~l~a~i~E~lRl~p~~~~~~r~~~~~~~~~~g~~ipkGt~v~~~~~~~~~  406 (502)
                                       .+.++++++.+||||+|||+||||++|++|...|++.+|+++++||.|||||.|.++.+++||
T Consensus       343 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~Lpyl~Avi~EtLRl~p~~p~~~r~~~~d~~~~~G~~IpkGt~V~~~~~~~h~  422 (516)
T PLN03195        343 EEDPEDSQSFNQRVTQFAGLLTYDSLGKLQYLHAVITETLRLYPAVPQDPKGILEDDVLPDGTKVKAGGMVTYVPYSMGR  422 (516)
T ss_pred             cccccccchhhhhcccccCCCCHHHHhcCHHHHHHHHHHhhcCCCCcchhhhhccCcCcCCCcEECCCCEEEEehHhhcc
Confidence                             235899999999999999999999999999999988888888799999999999999999999


Q ss_pred             CCcCcCCCCCCCCCCcccCCCCCCCCCCCCCCCCCCCcccCccHHHHHHHHHHHHHHHhhcceEEecCCCCCCcccccee
Q 040199          407 MERIWGPDCLEFKPQRWLRNGRFVPENPFKYPVFQAGHRVCLGKDIALVEMKSVALAVVRKFNIRVSDPNQAPRFAPGLT  486 (502)
Q Consensus       407 d~~~~g~~p~~F~P~Rfl~~~~~~~~~~~~~~~Fg~G~r~C~G~~~a~~~~~~~l~~ll~~f~~~~~~~~~~~~~~~~~~  486 (502)
                      ||++||+||++|+||||++++......+..++|||+|+|.|+|+++|++|++++++.++++|++++.++.+ .......+
T Consensus       423 dp~~~g~dP~~F~PeRwl~~~~~~~~~~~~~~pFG~G~R~CiG~~lA~~e~~~~la~ll~~f~~~~~~~~~-~~~~~~~~  501 (516)
T PLN03195        423 MEYNWGPDAASFKPERWIKDGVFQNASPFKFTAFQAGPRICLGKDSAYLQMKMALALLCRFFKFQLVPGHP-VKYRMMTI  501 (516)
T ss_pred             ChhhhccChhhcCCcccCCCCCcCCCCCceEeccCCCCCcCcCHHHHHHHHHHHHHHHHHhceeEecCCCc-ceeeeeeE
Confidence            99999999999999999964322223456799999999999999999999999999999999999875432 33444567


Q ss_pred             eeccCCeeEEEEEcC
Q 040199          487 ATVRGGLPVMVQERG  501 (502)
Q Consensus       487 ~~~~~~~~v~~~~r~  501 (502)
                      ..|..+++|++++|+
T Consensus       502 ~~~~~~~~v~~~~r~  516 (516)
T PLN03195        502 LSMANGLKVTVSRRS  516 (516)
T ss_pred             EecCCCEEEEEEeCC
Confidence            789999999999985


No 7  
>PLN02971 tryptophan N-hydroxylase
Probab=100.00  E-value=1.7e-71  Score=548.30  Aligned_cols=450  Identities=18%  Similarity=0.244  Sum_probs=332.4

Q ss_pred             CCCCCCCCCcccchhhhcccc-chhHHHHHHHHhCCCceEEEeeeC--eEEecChhhHHHHhccCCCCCCCCchhhHhhh
Q 040199           43 PWCQCDACRSYLTFSWLKDFN-NLCDWYTHLLAKSPTGTIHLHVLG--NTITSNPGNVEYILKTRFDNYPKGKPFSVILG  119 (502)
Q Consensus        43 ~~~~~P~~~p~ig~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~--~vvv~~p~~~~~i~~~~~~~~~~~~~~~~~~~  119 (502)
                      +.||||.++|++|+.+..... ..+.++.++.++||..++.++.++  +|+++||+.+++++.+++..|++++...  ..
T Consensus        57 ~lPPGP~~lPiiGnl~~l~~~~~~~~~l~~~~~~yg~~i~~~~~G~~~~vvv~dpe~ikevl~~~~~~f~~rp~~~--~~  134 (543)
T PLN02971         57 PLPPGPTGFPIVGMIPAMLKNRPVFRWLHSLMKELNTEIACVRLGNTHVIPVTCPKIAREIFKQQDALFASRPLTY--AQ  134 (543)
T ss_pred             CCCcCCCCCCcccchHHhccCCcHhHHHHHHHHHhCCceEEEEcCCcceEEECCHHHHHHHHHhcchhhcCCCccc--ch
Confidence            378899999999865443222 357789999999974467777664  8899999999999998877788664322  12


Q ss_pred             hccCCc----ccccCChhHHHHHhhhcccc-chhhHHHHHHHHHHHHHHHhHHHHHHHhccCCCCceeHHHHHHHHHHHH
Q 040199          120 DLLGRG----IFNVDGDSWEFQRKMACFEL-GSFNIKMYALELVTAEIRSRLIPLLSSAANKDNNILDLQDVFRRFSFDS  194 (502)
Q Consensus       120 ~~~g~~----i~~~~g~~w~~~R~~~~~~~-~~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~vdl~~~~~~~~~~~  194 (502)
                      ...+.+    ++..+|+.|+++|+++.+.+ ++..+..+  ..+.++..+.+.+.+.+...++ +++|+.+.+.++++++
T Consensus       135 ~~l~~~~~~~l~~~~G~~Wk~~Rk~l~~~l~~~~~~~~~--~~~~~~~~~~l~~~l~~~~~~~-~~vd~~~~~~~~t~~v  211 (543)
T PLN02971        135 KILSNGYKTCVITPFGEQFKKMRKVIMTEIVCPARHRWL--HDNRAEETDHLTAWLYNMVKNS-EPVDLRFVTRHYCGNA  211 (543)
T ss_pred             hhccCCCCceEecCCcHHHHHHHHHHHHHhccHHHHHHH--HHHHHHHHHHHHHHHHHhccCC-CceehHHHHHHHHHHH
Confidence            233333    77788999999999997655 44444444  4556666677888877654444 5799999999999999


Q ss_pred             hhhhhcCCCCccccc---CCCcchHHHHHHHHHHHHHHhhh-CCCchhHHHHHhcccchHHHHHHHHHHHHHHHHHHHHH
Q 040199          195 ICKFSFGLDPECLML---NLPVSKFATAFDLASKLSAERAL-APSPIVWKIKRLLNIGSEKQLKGAINLVNELAETMIHQ  270 (502)
Q Consensus       195 i~~~~fG~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~  270 (502)
                      +++++||.++...+.   .....+..+.++........... ....+++.+.++...+..+...+..+.+.+++.+.|++
T Consensus       212 i~~~~fG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~  291 (543)
T PLN02971        212 IKRLMFGTRTFSEKTEPDGGPTLEDIEHMDAMFEGLGFTFAFCISDYLPMLTGLDLNGHEKIMRESSAIMDKYHDPIIDE  291 (543)
T ss_pred             HHHHHhCCcccccccccccchhHHHHHHHHHHHHHHHhccCCcHHHhCCchhhhcccchHHHHHHHHHHHHHHHHHHHHH
Confidence            999999998643210   11112233333333222111100 00111111111110122344555677788888888887


Q ss_pred             HHhc---C-CCCCCcHHHHHHhcc-------CChHHHHHHHHHHHHhchhchHhHHHHHHHHHhcCcHHHHHHHHHHHhh
Q 040199          271 RQQM---G-FSKKNDLLSRFMASI-------DDDKYLRDIVVSFLLAGRDTVASGLTSFFWLLSQHPEVESAIRNESDKI  339 (502)
Q Consensus       271 ~~~~---~-~~~~~dll~~ll~~~-------~~~~~i~~~~~~~~~ag~~tt~~~l~~~l~~L~~~p~~q~~lr~Ei~~~  339 (502)
                      +++.   + .....|+++.+++..       .+++++.+++.++++||+|||+++++|++++|++||++|+|+|+||+++
T Consensus       292 ~~~~~~~~~~~~~~d~l~~ll~~~~~~~~~~ls~~~i~~~~~~l~~AG~dTTa~tl~~~l~~La~~Pevq~kl~~EI~~v  371 (543)
T PLN02971        292 RIKMWREGKRTQIEDFLDIFISIKDEAGQPLLTADEIKPTIKELVMAAPDNPSNAVEWAMAEMINKPEILHKAMEEIDRV  371 (543)
T ss_pred             HHHHHhccCCCCCcCHHHHHHhhhcccCCCCCCHHHHHHhHHHHheeccchHHHHHHHHHHHHHhCHHHHHHHHHHHHHH
Confidence            7542   2 123479999999742       2678999999999999999999999999999999999999999999999


Q ss_pred             cCCCCCCCCHHhhccChhHHHHHhhhcCCCCCCcCCc-cccccCcccCCCeeeCCCCEEEEcccccccCCcCcCCCCCCC
Q 040199          340 MKPNQDLVSFEQLRELHYLNAAVYESMRLFPPVQFDS-KFAQEDDILPDGTFVRKGTRVTYHPYAMGRMERIWGPDCLEF  418 (502)
Q Consensus       340 ~~~~~~~~~~~~l~~lp~l~a~i~E~lRl~p~~~~~~-r~~~~~~~~~~g~~ipkGt~v~~~~~~~~~d~~~~g~~p~~F  418 (502)
                      +|.+. .++++++.+|||++|||+|++|++|++|... |.+.+|.++ +||.|||||.|+++.|++||||++| +||++|
T Consensus       372 ~g~~~-~~t~~d~~~LpYl~avi~E~lRl~p~~~~~~~r~~~~d~~~-~G~~IpkGt~v~~~~~~~~~d~~~~-~dP~~F  448 (543)
T PLN02971        372 VGKER-FVQESDIPKLNYVKAIIREAFRLHPVAAFNLPHVALSDTTV-AGYHIPKGSQVLLSRYGLGRNPKVW-SDPLSF  448 (543)
T ss_pred             hCCCC-CCCHHHhccCHHHHHHHHHHHhcCCCcccCcceecCCCeeE-CCEEECCCCEEEECcHHhcCChhhC-CCcccc
Confidence            98644 6899999999999999999999999999854 666666665 9999999999999999999999999 999999


Q ss_pred             CCCcccCCCCC--CCCCCCCCCCCCCCcccCccHHHHHHHHHHHHHHHhhcceEEecCCCCCCcccc-ceeeeccCCeeE
Q 040199          419 KPQRWLRNGRF--VPENPFKYPVFQAGHRVCLGKDIALVEMKSVALAVVRKFNIRVSDPNQAPRFAP-GLTATVRGGLPV  495 (502)
Q Consensus       419 ~P~Rfl~~~~~--~~~~~~~~~~Fg~G~r~C~G~~~a~~~~~~~l~~ll~~f~~~~~~~~~~~~~~~-~~~~~~~~~~~v  495 (502)
                      +||||++++..  ...++..++|||+|+|.|+|+++|++|+++++++|+++|++++++++......+ ..+..-++.+.+
T Consensus       449 ~PeRfl~~~~~~~~~~~~~~~~pFG~G~R~C~G~~lA~~e~~~~la~ll~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~  528 (543)
T PLN02971        449 KPERHLNECSEVTLTENDLRFISFSTGKRGCAAPALGTAITTMMLARLLQGFKWKLAGSETRVELMESSHDMFLSKPLVM  528 (543)
T ss_pred             CcccCCCCCccccccCCCCccCCCCCCCCCCCCHHHHHHHHHHHHHHHHHhCEEEeCCCCCCcchhhhcCccccccccee
Confidence            99999964321  112456799999999999999999999999999999999999987543333222 124445668888


Q ss_pred             EEEEc
Q 040199          496 MVQER  500 (502)
Q Consensus       496 ~~~~r  500 (502)
                      .+++|
T Consensus       529 ~~~~~  533 (543)
T PLN02971        529 VGELR  533 (543)
T ss_pred             eeeec
Confidence            88888


No 8  
>PLN02290 cytokinin trans-hydroxylase
Probab=100.00  E-value=9.4e-71  Score=543.03  Aligned_cols=438  Identities=21%  Similarity=0.287  Sum_probs=338.7

Q ss_pred             CCCCCCCCCcccchhhhccc------------------cchhHHHHHHHHhCCCceEEEeeeC--eEEecChhhHHHHhc
Q 040199           43 PWCQCDACRSYLTFSWLKDF------------------NNLCDWYTHLLAKSPTGTIHLHVLG--NTITSNPGNVEYILK  102 (502)
Q Consensus        43 ~~~~~P~~~p~ig~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~--~vvv~~p~~~~~i~~  102 (502)
                      ..+|||+++|++|+.+....                  .+....+.+|.++||. ++.++.++  +|+++||+.+++++.
T Consensus        42 ~~~PGP~~~P~iGnl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yG~-i~~~~~g~~~~vvv~dp~~v~~il~  120 (516)
T PLN02290         42 QGVRGPKPRPLTGNILDVSALVSQSTSKDMDSIHHDIVGRLLPHYVAWSKQYGK-RFIYWNGTEPRLCLTETELIKELLT  120 (516)
T ss_pred             cCCCCCCCCcCCCCHHHHHHHHHHhhcCCCCCCCcccccccchHHHHHHHHhCC-eEEEccCCccEEEECCHHHHHHHHh
Confidence            37899999999986543321                  2233457889999985 66776655  899999999999999


Q ss_pred             cCCCCCCCCchhh-HhhhhccCCcccccCChhHHHHHhhhccccchhhHHHHHHHHHHHHHHHhHHHHHHHhccCCCCce
Q 040199          103 TRFDNYPKGKPFS-VILGDLLGRGIFNVDGDSWEFQRKMACFELGSFNIKMYALELVTAEIRSRLIPLLSSAANKDNNIL  181 (502)
Q Consensus       103 ~~~~~~~~~~~~~-~~~~~~~g~~i~~~~g~~w~~~R~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~v  181 (502)
                      ++ ..+..+++.. .......|.+++..+|+.|+++|+++.+.|+..+++.+. +.+ .+..+.+.+.+.+..+.+++++
T Consensus       121 ~~-~~~~~r~~~~~~~~~~~~g~~l~~~~g~~Wk~~Rk~~~~~f~~~~l~~~~-~~i-~~~~~~l~~~l~~~~~~~~~~v  197 (516)
T PLN02290        121 KY-NTVTGKSWLQQQGTKHFIGRGLLMANGADWYHQRHIAAPAFMGDRLKGYA-GHM-VECTKQMLQSLQKAVESGQTEV  197 (516)
T ss_pred             cC-CCCCCCcchhhhHHHHHhcCCccccCchHHHHHHhhcccccCHHHHHHHH-HHH-HHHHHHHHHHHHHHHhcCCceE
Confidence            86 4444343321 112234577899999999999999999999999998885 554 4445667777876544333589


Q ss_pred             eHHHHHHHHHHHHhhhhhcCCCCcccccCCCcchHHHHHHHHHHHHHHhh-hCCCchhHHHHHhcccchHHHHHHHHHHH
Q 040199          182 DLQDVFRRFSFDSICKFSFGLDPECLMLNLPVSKFATAFDLASKLSAERA-LAPSPIVWKIKRLLNIGSEKQLKGAINLV  260 (502)
Q Consensus       182 dl~~~~~~~~~~~i~~~~fG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~~~~~~~~  260 (502)
                      |+.+.+..++++++++++||.+++..      .++.+.+..+........ ....|.    ..+++.+..+...+..+.+
T Consensus       198 d~~~~~~~~~~~vi~~~~fG~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~p~----~~~~p~~~~~~~~~~~~~~  267 (516)
T PLN02290        198 EIGEYMTRLTADIISRTEFDSSYEKG------KQIFHLLTVLQRLCAQATRHLCFPG----SRFFPSKYNREIKSLKGEV  267 (516)
T ss_pred             EhHHHHHHHHHHHHHHHHcCCccccc------hHHHHHHHHHHHHHHHhhhhhcCch----hhhCCChhHHHHHHHHHHH
Confidence            99999999999999999999886421      223333332222211110 011111    1123323344556677888


Q ss_pred             HHHHHHHHHHHHhc---C--CCCCCcHHHHHHhcc---------CChHHHHHHHHHHHHhchhchHhHHHHHHHHHhcCc
Q 040199          261 NELAETMIHQRQQM---G--FSKKNDLLSRFMASI---------DDDKYLRDIVVSFLLAGRDTVASGLTSFFWLLSQHP  326 (502)
Q Consensus       261 ~~~~~~~i~~~~~~---~--~~~~~dll~~ll~~~---------~~~~~i~~~~~~~~~ag~~tt~~~l~~~l~~L~~~p  326 (502)
                      .+++.+.|+++++.   +  .....|+++.+++..         .+++++.+++.++++||+|||+++++|++++|++||
T Consensus       268 ~~~~~~~i~~~~~~~~~~~~~~~~~d~l~~ll~~~~~~~~~~~~l~~~~i~~~~~~~~~AG~dTta~tl~~~l~~L~~~P  347 (516)
T PLN02290        268 ERLLMEIIQSRRDCVEIGRSSSYGDDLLGMLLNEMEKKRSNGFNLNLQLIMDECKTFFFAGHETTALLLTWTLMLLASNP  347 (516)
T ss_pred             HHHHHHHHHHHHHHhhcccCCCCCCCHHHHHHHhccccCCCCCCCCHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhcCH
Confidence            89999999887652   1  123579999998742         156789999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhhcCCCCCCCCHHhhccChhHHHHHhhhcCCCCCCcCCccccccCcccCCCeeeCCCCEEEEccccccc
Q 040199          327 EVESAIRNESDKIMKPNQDLVSFEQLRELHYLNAAVYESMRLFPPVQFDSKFAQEDDILPDGTFVRKGTRVTYHPYAMGR  406 (502)
Q Consensus       327 ~~q~~lr~Ei~~~~~~~~~~~~~~~l~~lp~l~a~i~E~lRl~p~~~~~~r~~~~~~~~~~g~~ipkGt~v~~~~~~~~~  406 (502)
                      ++|+|+|+||++++|.+  .++++++++||||+|||+||+|++|+++.+.|.+.+|.++ +||.|||||.|.++.+++||
T Consensus       348 ~vq~kl~~Ei~~v~~~~--~~~~~~l~~lpYl~avi~EtlRl~p~~~~~~R~~~~d~~i-~g~~IP~Gt~V~~~~~~~~r  424 (516)
T PLN02290        348 TWQDKVRAEVAEVCGGE--TPSVDHLSKLTLLNMVINESLRLYPPATLLPRMAFEDIKL-GDLHIPKGLSIWIPVLAIHH  424 (516)
T ss_pred             HHHHHHHHHHHHHhCCC--CCCHHHHhcChHHHHHHHHHHHcCCCccccceeecCCeeE-CCEEECCCCEEEecHHHhcC
Confidence            99999999999999864  5899999999999999999999999999888888887766 99999999999999999999


Q ss_pred             CCcCcCCCCCCCCCCcccCCCCCCCCCCCCCCCCCCCcccCccHHHHHHHHHHHHHHHhhcceEEecCCCCCCcccccee
Q 040199          407 MERIWGPDCLEFKPQRWLRNGRFVPENPFKYPVFQAGHRVCLGKDIALVEMKSVALAVVRKFNIRVSDPNQAPRFAPGLT  486 (502)
Q Consensus       407 d~~~~g~~p~~F~P~Rfl~~~~~~~~~~~~~~~Fg~G~r~C~G~~~a~~~~~~~l~~ll~~f~~~~~~~~~~~~~~~~~~  486 (502)
                      ||++||+||++|+||||++...   .....++|||+|+|.|+|+++|++|++++++.|+++|+++++++.+ .....+++
T Consensus       425 dp~~~~~dP~~F~PeRfl~~~~---~~~~~~~pFG~G~R~C~G~~lA~~el~l~la~ll~~f~~~~~~~~~-~~~~~~~~  500 (516)
T PLN02290        425 SEELWGKDANEFNPDRFAGRPF---APGRHFIPFAAGPRNCIGQAFAMMEAKIILAMLISKFSFTISDNYR-HAPVVVLT  500 (516)
T ss_pred             ChhhhCCChhhcCccccCCCCC---CCCCeEecCCCCCCCCccHHHHHHHHHHHHHHHHHhceEeeCCCcc-cCccceee
Confidence            9999977999999999995421   1334689999999999999999999999999999999999876532 22233678


Q ss_pred             eeccCCeeEEEEEcC
Q 040199          487 ATVRGGLPVMVQERG  501 (502)
Q Consensus       487 ~~~~~~~~v~~~~r~  501 (502)
                      ..|.+|++|++++|+
T Consensus       501 ~~p~~~~~~~~~~~~  515 (516)
T PLN02290        501 IKPKYGVQVCLKPLN  515 (516)
T ss_pred             ecCCCCCeEEEEeCC
Confidence            889999999999996


No 9  
>PTZ00404 cytochrome P450; Provisional
Probab=100.00  E-value=4.3e-71  Score=541.30  Aligned_cols=444  Identities=18%  Similarity=0.254  Sum_probs=339.6

Q ss_pred             cCCCCCCCCCCcccchhhhccccchhHHHHHHHHhCCCceEEEeeeC--eEEecChhhHHHHhccCCCCCCCCchhhHhh
Q 040199           41 LKPWCQCDACRSYLTFSWLKDFNNLCDWYTHLLAKSPTGTIHLHVLG--NTITSNPGNVEYILKTRFDNYPKGKPFSVIL  118 (502)
Q Consensus        41 ~~~~~~~P~~~p~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~vvv~~p~~~~~i~~~~~~~~~~~~~~~~~~  118 (502)
                      ++...|+|.++|++|+.+ ....+.+..+.++.++||. +++++.++  .|+++||+.+++++.++...|.+++......
T Consensus        27 ~~~~~pgp~~~p~~G~~~-~~~~~~~~~~~~~~~~yG~-i~~~~~g~~~~v~i~~p~~~~~il~~~~~~~~~r~~~~~~~  104 (482)
T PTZ00404         27 HKNELKGPIPIPILGNLH-QLGNLPHRDLTKMSKKYGG-IFRIWFADLYTVVLSDPILIREMFVDNFDNFSDRPKIPSIK  104 (482)
T ss_pred             cCCCCCCCCCCCeeccHh-hhcccHHHHHHHHHHHhCC-eeEEEecCCCEEEECCHHHHHHHHHhcchhhcCCCCcceee
Confidence            344778888899997543 3345788999999999985 78888765  8999999999999987655676554333222


Q ss_pred             hhccCCcccccCChhHHHHHhhhccccchhhHHHHHHHHHHHHHHHhHHHHHHHhccCCCCceeHHHHHHHHHHHHhhhh
Q 040199          119 GDLLGRGIFNVDGDSWEFQRKMACFELGSFNIKMYALELVTAEIRSRLIPLLSSAANKDNNILDLQDVFRRFSFDSICKF  198 (502)
Q Consensus       119 ~~~~g~~i~~~~g~~w~~~R~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~vdl~~~~~~~~~~~i~~~  198 (502)
                      ....+.|+++.+|+.|+++|+++.++|+..++..+. +.+ .+..+.+.+.+.+..+.+ +++|+.+.+.++++|+++.+
T Consensus       105 ~~~~~~~l~~~~g~~w~~~Rk~~~~~f~~~~l~~~~-~~i-~~~~~~l~~~l~~~~~~~-~~vd~~~~~~~~~~dvi~~~  181 (482)
T PTZ00404        105 HGTFYHGIVTSSGEYWKRNREIVGKAMRKTNLKHIY-DLL-DDQVDVLIESMKKIESSG-ETFEPRYYLTKFTMSAMFKY  181 (482)
T ss_pred             eeccCCceeccChHHHHHHHHHHHHHHhhhccccHH-HHH-HHHHHHHHHHHHHHHhcC-CccCHHHHHHHHHHHHHHHH
Confidence            223477899999999999999999999998898875 544 444566777776654444 57999999999999999999


Q ss_pred             hcCCCCccccc--CCCcchHHHHHHHHHHHHHHhhhCCCchhHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHhc-C
Q 040199          199 SFGLDPECLML--NLPVSKFATAFDLASKLSAERALAPSPIVWKIKRLLNIGSEKQLKGAINLVNELAETMIHQRQQM-G  275 (502)
Q Consensus       199 ~fG~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~  275 (502)
                      +||.+++..+.  .....++.+.+..+.........  ..+.+.+...+. .......++.+.+.+++++.++++++. .
T Consensus       182 ~fG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~i~~~~~~~~  258 (482)
T PTZ00404        182 IFNEDISFDEDIHNGKLAELMGPMEQVFKDLGSGSL--FDVIEITQPLYY-QYLEHTDKNFKKIKKFIKEKYHEHLKTID  258 (482)
T ss_pred             HhccccccccccchhHHHHHHHHHHHHHHHhCCCch--hhhhhHhhhhhH-HHHHHHHHHHHHHHHHHHHHHHHHHHccC
Confidence            99998764321  11123444444443322111100  011111111110 111233456777888888888776654 2


Q ss_pred             CCCCCcHHHHHHhccC--ChH---HHHHHHHHHHHhchhchHhHHHHHHHHHhcCcHHHHHHHHHHHhhcCCCCCCCCHH
Q 040199          276 FSKKNDLLSRFMASID--DDK---YLRDIVVSFLLAGRDTVASGLTSFFWLLSQHPEVESAIRNESDKIMKPNQDLVSFE  350 (502)
Q Consensus       276 ~~~~~dll~~ll~~~~--~~~---~i~~~~~~~~~ag~~tt~~~l~~~l~~L~~~p~~q~~lr~Ei~~~~~~~~~~~~~~  350 (502)
                      .....|+++.++++..  +++   ++.+++.++++||+|||+++++|++++|++||++|+||++||+++++++. .++++
T Consensus       259 ~~~~~dll~~ll~~~~~~~~~~~~~i~~~~~~~~~AG~dTta~~l~~~l~~L~~~P~vq~kl~~Ei~~v~~~~~-~~~~~  337 (482)
T PTZ00404        259 PEVPRDLLDLLIKEYGTNTDDDILSILATILDFFLAGVDTSATSLEWMVLMLCNYPEIQEKAYNEIKSTVNGRN-KVLLS  337 (482)
T ss_pred             CCCcccHHHHHHHHhccCCcccHHHHHHHHHHHHHhccchHHHHHHHHHHHHHcCcHHHHHHHHHHHHHhcCCC-CCCcc
Confidence            2346799999998642  333   38889999999999999999999999999999999999999999998653 58999


Q ss_pred             hhccChhHHHHHhhhcCCCCCCcC-CccccccCcccCCCeeeCCCCEEEEcccccccCCcCcCCCCCCCCCCcccCCCCC
Q 040199          351 QLRELHYLNAAVYESMRLFPPVQF-DSKFAQEDDILPDGTFVRKGTRVTYHPYAMGRMERIWGPDCLEFKPQRWLRNGRF  429 (502)
Q Consensus       351 ~l~~lp~l~a~i~E~lRl~p~~~~-~~r~~~~~~~~~~g~~ipkGt~v~~~~~~~~~d~~~~g~~p~~F~P~Rfl~~~~~  429 (502)
                      ++++||||+|||+||||++|+++. ..|.+.+|.++.+||.|||||.|.++.+++||||++| +||++|+||||++..  
T Consensus       338 ~l~~L~yl~avi~EtlRl~p~~~~~~~R~~~~d~~l~~g~~Ip~Gt~V~~~~~a~hrdp~~~-~dP~~F~PeRwl~~~--  414 (482)
T PTZ00404        338 DRQSTPYTVAIIKETLRYKPVSPFGLPRSTSNDIIIGGGHFIPKDAQILINYYSLGRNEKYF-ENPEQFDPSRFLNPD--  414 (482)
T ss_pred             ccccChHHHHHHHHHHHhcCCcccccceeccCCEEecCCeEECCCCEEEeeHHHhhCCcccc-CCccccCccccCCCC--
Confidence            999999999999999999999997 4688887766558999999999999999999999999 999999999998642  


Q ss_pred             CCCCCCCCCCCCCCcccCccHHHHHHHHHHHHHHHhhcceEEecCCCCC-CccccceeeeccCCeeEEEEEc
Q 040199          430 VPENPFKYPVFQAGHRVCLGKDIALVEMKSVALAVVRKFNIRVSDPNQA-PRFAPGLTATVRGGLPVMVQER  500 (502)
Q Consensus       430 ~~~~~~~~~~Fg~G~r~C~G~~~a~~~~~~~l~~ll~~f~~~~~~~~~~-~~~~~~~~~~~~~~~~v~~~~r  500 (502)
                         ....++|||+|+|.|+|+++|++|+++++++++++|+++++++.+. .....+++.. +.+++|.+++|
T Consensus       415 ---~~~~~~pFg~G~R~C~G~~~A~~e~~~~la~ll~~f~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~R  482 (482)
T PTZ00404        415 ---SNDAFMPFSIGPRNCVGQQFAQDELYLAFSNIILNFKLKSIDGKKIDETEEYGLTLK-PNKFKVLLEKR  482 (482)
T ss_pred             ---CCCceeccCCCCCCCccHHHHHHHHHHHHHHHHHhcEEecCCCCCCCcccccceeec-CCCceeeeecC
Confidence               4568999999999999999999999999999999999998765432 2223456666 67899999987


No 10 
>KOG0159 consensus Cytochrome P450 CYP11/CYP12/CYP24/CYP27 subfamilies [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00  E-value=1.7e-70  Score=498.23  Aligned_cols=446  Identities=22%  Similarity=0.346  Sum_probs=373.2

Q ss_pred             CCCCCCCCcccchhh---hccccchhHHHHHHHHhCCCceEEEeeeC---eEEecChhhHHHHhccCCCCCCCCc-hhhH
Q 040199           44 WCQCDACRSYLTFSW---LKDFNNLCDWYTHLLAKSPTGTIHLHVLG---NTITSNPGNVEYILKTRFDNYPKGK-PFSV  116 (502)
Q Consensus        44 ~~~~P~~~p~ig~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~vvv~~p~~~~~i~~~~~~~~~~~~-~~~~  116 (502)
                      --|+|..+|+++..+   ....+++|+.+....++||. +++...+|   .|.+.+|++++.+++++ ..++-++ .++.
T Consensus        51 ~IP~p~~~~~l~~l~~~~~~~~~~lh~~~~~~~~~YG~-I~~~~~~G~~~~V~v~~p~d~E~v~r~E-G~~P~Rp~~~~~  128 (519)
T KOG0159|consen   51 EIPGPKGLPFLGLLWIWRAGGATKLHQHIVQLHQKYGP-IFREGMLGRVDLVHVYNPDDVEKVFRNE-GKYPFRPLLIEP  128 (519)
T ss_pred             hcCCCCCccHHHHHHHHHhhhhhHHHHHHHHHHHHcCc-eeeeccCCCCCeEEeeCHHHHHHHHhcC-CCCCCcccccch
Confidence            346778888887555   44667999999999999986 77777444   79999999999999987 5567553 2333


Q ss_pred             hh--hhccC--CcccccCChhHHHHHhhhcccc-chhhHHHHHHHHHHHHHHHhHHHHHHHhcc--CCCCceeHHHHHHH
Q 040199          117 IL--GDLLG--RGIFNVDGDSWEFQRKMACFEL-GSFNIKMYALELVTAEIRSRLIPLLSSAAN--KDNNILDLQDVFRR  189 (502)
Q Consensus       117 ~~--~~~~g--~~i~~~~g~~w~~~R~~~~~~~-~~~~l~~~~~~~~~~~~~~~l~~~l~~~~~--~~~~~vdl~~~~~~  189 (502)
                      +.  .+.++  .|++..+|+.|.+.|..+++.+ ++++++.|. + ..+++.+.++..++...+  ++..+.|+.+.+.+
T Consensus       129 w~~~rd~~~~~~Gl~~~~G~~W~~~Rs~ln~~ll~P~~v~~yl-~-~l~~V~~DF~~~l~~~r~~~~~~~~~D~~~~l~~  206 (519)
T KOG0159|consen  129 WVAYRDFRGGVCGLFLLEGPEWQRLRSALNPLLLQPQAVRRYL-P-QLNAVSDDFVERLRAQRDPERGELVPDFAQELYR  206 (519)
T ss_pred             hhhhHHhhccCCCcccCCCHHHHHHHHHhchhhcCHHHHHHHh-h-HHHHHHHHHHHHHHHHhcccccccchhHHHHHHH
Confidence            32  23333  4899999999999999999887 889999996 4 446666778888888765  34468999999999


Q ss_pred             HHHHHhhhhhcCCCCcccccC--CCcchHHHHHHHHHHHHHHhhhCCCchhHHHHHhcccchHHHHHHHHHHHHHHHHHH
Q 040199          190 FSFDSICKFSFGLDPECLMLN--LPVSKFATAFDLASKLSAERALAPSPIVWKIKRLLNIGSEKQLKGAINLVNELAETM  267 (502)
Q Consensus       190 ~~~~~i~~~~fG~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  267 (502)
                      ++++.||.++||.+++++...  .....+++++..+...+....+.+     .+.+.++.+.++++.++.+.+.++..++
T Consensus       207 wslEsi~~V~l~~rlG~L~~~~~~~a~~fi~ai~~~F~~s~~l~~~p-----~l~r~~~t~~wk~~~~~~D~i~~~~~~~  281 (519)
T KOG0159|consen  207 WSLESICLVLLGTRLGLLGESPPSEAQQFIDAIKKMFESSAQLMLMP-----SLWRYFPTKVWKDFVRAWDQIFDVGDKY  281 (519)
T ss_pred             HHHHHHHHHHHhcccccccCCCCHHHHHHHHHHHHHHHhHHHHHhcc-----hHHHhCCChHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999998764  345677888877776665533322     3334566678899999999999999999


Q ss_pred             HHHHHhc----CC---CCCCcHHHHHHhccCChHHHHHHHHHHHHhchhchHhHHHHHHHHHhcCcHHHHHHHHHHHhhc
Q 040199          268 IHQRQQM----GF---SKKNDLLSRFMASIDDDKYLRDIVVSFLLAGRDTVASGLTSFFWLLSQHPEVESAIRNESDKIM  340 (502)
Q Consensus       268 i~~~~~~----~~---~~~~dll~~ll~~~~~~~~i~~~~~~~~~ag~~tt~~~l~~~l~~L~~~p~~q~~lr~Ei~~~~  340 (502)
                      |++..+.    ..   .....++..+.++..+.+++..+++++++||.||||++++|+||+|++||++|++|++|+..+.
T Consensus       282 Id~~l~~l~~~~~~~~~~~~~l~~~L~~~~l~~k~~~~~~~dll~aGvDTTs~tl~~~Ly~LarnP~~Q~~L~~Ei~~~~  361 (519)
T KOG0159|consen  282 IDNALEELEKQDSAGSEYTGSLLELLLRKELSRKDAKANVMDLLAAGVDTTSNTLLWALYELARNPEVQQRLREEILAVL  361 (519)
T ss_pred             HHHHHHHHHhccccccchhHHHHHHHHHccCCHHHHHHHHHHHHHHhccchHHHHHHHHHHHhcChHHHHHHHHHHHhhC
Confidence            9877642    11   1133456666666668999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCCHHhhccChhHHHHHhhhcCCCCCCcCCccccccCcccCCCeeeCCCCEEEEcccccccCCcCcCCCCCCCCC
Q 040199          341 KPNQDLVSFEQLRELHYLNAAVYESMRLFPPVQFDSKFAQEDDILPDGTFVRKGTRVTYHPYAMGRMERIWGPDCLEFKP  420 (502)
Q Consensus       341 ~~~~~~~~~~~l~~lp~l~a~i~E~lRl~p~~~~~~r~~~~~~~~~~g~~ipkGt~v~~~~~~~~~d~~~~g~~p~~F~P  420 (502)
                      ++.+..++.+++.++|||+||||||+||||.+|...|...+|.++ +||.|||||.|.++.+.+.+||++| ++|++|+|
T Consensus       362 p~~~~~~~~~~l~~~pyLrAcIKEtlRlyPv~~~~~R~l~~D~vL-~gY~vPagT~V~l~~~~~~r~~~~F-~~p~~F~P  439 (519)
T KOG0159|consen  362 PSGNSELTQKALTNMPYLRACIKETLRLYPVVPGNGRVLPKDLVL-SGYHVPAGTLVVLFLYVLGRNPAYF-PDPEEFLP  439 (519)
T ss_pred             CCcccccchHHHhhCHHHHHHHHhhhceeccccccccccchhcee-ccceecCCCeEEEeehhhccChhhC-CCccccCh
Confidence            886667999999999999999999999999999999999988888 9999999999999999999999999 99999999


Q ss_pred             CcccCCCCCCCCCCCCCCCCCCCcccCccHHHHHHHHHHHHHHHhhcceEEecCCCCCCccccceeeeccCCeeEEEEEc
Q 040199          421 QRWLRNGRFVPENPFKYPVFQAGHRVCLGKDIALVEMKSVALAVVRKFNIRVSDPNQAPRFAPGLTATVRGGLPVMVQER  500 (502)
Q Consensus       421 ~Rfl~~~~~~~~~~~~~~~Fg~G~r~C~G~~~a~~~~~~~l~~ll~~f~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~r  500 (502)
                      ||||+++. ...++..++|||.|+|+|+||++|++|+.++||+++++|+++...+ .+.++.-.+++.|...+...|++|
T Consensus       440 eRWL~~~~-~~~~pF~~LPFGfG~R~C~GRRiAElEl~llLarllr~f~V~~~~~-~pv~~~~~~il~P~~~l~f~f~~r  517 (519)
T KOG0159|consen  440 ERWLKPST-KTIHPFASLPFGFGPRMCLGRRIAELELHLLLARLLRNFKVEFLHE-EPVEYVYRFILVPNRPLRFKFRPR  517 (519)
T ss_pred             hhhccccc-CCCCCceecCCCCCccccchHHHHHHHHHHHHHHHHHhcceeecCC-CCccceeEEEEcCCCCcceeeeeC
Confidence            99998773 3458889999999999999999999999999999999999999775 334566678889999999999999


Q ss_pred             CC
Q 040199          501 GD  502 (502)
Q Consensus       501 ~~  502 (502)
                      +.
T Consensus       518 ~~  519 (519)
T KOG0159|consen  518 NE  519 (519)
T ss_pred             CC
Confidence            74


No 11 
>PLN03234 cytochrome P450 83B1; Provisional
Probab=100.00  E-value=1.1e-69  Score=533.76  Aligned_cols=448  Identities=17%  Similarity=0.216  Sum_probs=339.4

Q ss_pred             CCCCCCCCCcccchhhhccccchhHHHHHHHHhCCCceEEEeeeC--eEEecChhhHHHHhccCCCCCCCCchhhHhhh-
Q 040199           43 PWCQCDACRSYLTFSWLKDFNNLCDWYTHLLAKSPTGTIHLHVLG--NTITSNPGNVEYILKTRFDNYPKGKPFSVILG-  119 (502)
Q Consensus        43 ~~~~~P~~~p~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~vvv~~p~~~~~i~~~~~~~~~~~~~~~~~~~-  119 (502)
                      ..+|+|.++|++|+.......+.+.++.++.++||+ +++++.++  +|+++||+.+++++.++...|.+++.+..... 
T Consensus        28 ~~pPgp~~~P~iG~~~~~~~~~~~~~~~~~~~~yG~-~~~~~lg~~~~vvv~dpe~~~~il~~~~~~f~~r~~~~~~~~~  106 (499)
T PLN03234         28 RLPPGPKGLPIIGNLHQMEKFNPQHFLFRLSKLYGP-IFTMKIGGRRLAVISSAELAKELLKTQDLNFTARPLLKGQQTM  106 (499)
T ss_pred             CCCcCCCCCCeeccHHhcCCCCccHHHHHHHHHcCC-eEEEEecCcCEEEECCHHHHHHHHHhCCccccCCCCchhhhhh
Confidence            377889999999865544333677899999999986 77777666  88999999999999987677876654432211 


Q ss_pred             hccCCcc-cccCChhHHHHHhh-hccccchhhHHHHHHHHHHHHHHHhHHHHHHHhccCCCCceeHHHHHHHHHHHHhhh
Q 040199          120 DLLGRGI-FNVDGDSWEFQRKM-ACFELGSFNIKMYALELVTAEIRSRLIPLLSSAANKDNNILDLQDVFRRFSFDSICK  197 (502)
Q Consensus       120 ~~~g~~i-~~~~g~~w~~~R~~-~~~~~~~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~vdl~~~~~~~~~~~i~~  197 (502)
                      ...+.++ +...++.|+++|+. ..+.|++.++..+. +.+ ++..+.+++.+.+..+++ +++|+.+.+..++++++++
T Consensus       107 ~~~~~~~~~~~~~~~w~~~Rr~l~~~~f~~~~l~~~~-~~i-~~~~~~ll~~l~~~~~~~-~~vd~~~~~~~~t~dvi~~  183 (499)
T PLN03234        107 SYQGRELGFGQYTAYYREMRKMCMVNLFSPNRVASFR-PVR-EEECQRMMDKIYKAADQS-GTVDLSELLLSFTNCVVCR  183 (499)
T ss_pred             ccCCCccccCCCcHHHHHHHHHHHHHhcCHHHHHHhH-HHH-HHHHHHHHHHHHHhccCC-CeEEHHHHHHHHHHHHHHH
Confidence            1122222 44567999999987 46899999998885 444 555566777776554444 6899999999999999999


Q ss_pred             hhcCCCCcccccCCCcchHHHHHHHHHHHHHH-hhhCCCchhHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHhcC-
Q 040199          198 FSFGLDPECLMLNLPVSKFATAFDLASKLSAE-RALAPSPIVWKIKRLLNIGSEKQLKGAINLVNELAETMIHQRQQMG-  275 (502)
Q Consensus       198 ~~fG~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-  275 (502)
                      ++||.+++..+  ....++.+.+......... ......|+.+.+..+.  +..++..++.+.+.++++++|+++++.. 
T Consensus       184 ~~fG~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~--~~~~~~~~~~~~~~~~~~~~i~~~~~~~~  259 (499)
T PLN03234        184 QAFGKRYNEYG--TEMKRFIDILYETQALLGTLFFSDLFPYFGFLDNLT--GLSARLKKAFKELDTYLQELLDETLDPNR  259 (499)
T ss_pred             HHhCCcccccc--hhHHHHHHHHHHHHHHcCCCcHHHHhhHHHHhhhhh--hHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence            99999876432  1223344443333221110 0011122222222221  2345677889999999999998876532 


Q ss_pred             -CCCCCcHHHHHHhcc--------CChHHHHHHHHHHHHhchhchHhHHHHHHHHHhcCcHHHHHHHHHHHhhcCCCCCC
Q 040199          276 -FSKKNDLLSRFMASI--------DDDKYLRDIVVSFLLAGRDTVASGLTSFFWLLSQHPEVESAIRNESDKIMKPNQDL  346 (502)
Q Consensus       276 -~~~~~dll~~ll~~~--------~~~~~i~~~~~~~~~ag~~tt~~~l~~~l~~L~~~p~~q~~lr~Ei~~~~~~~~~~  346 (502)
                       .....|+++.+++..        .+++++.+++.++++||+|||+++++|++++|++||++|+|+|+|+++++++.. .
T Consensus       260 ~~~~~~d~l~~l~~~~~~~~~~~~~~~~~i~~~~~~ll~AG~dTTa~tl~~~l~~L~~~P~v~~kl~~Ei~~~~~~~~-~  338 (499)
T PLN03234        260 PKQETESFIDLLMQIYKDQPFSIKFTHENVKAMILDIVVPGTDTAAAVVVWAMTYLIKYPEAMKKAQDEVRNVIGDKG-Y  338 (499)
T ss_pred             cCCCcccHHHHHHHHhhccCcCCCCCHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHhCHHHHHHHHHHHHHHhCCCC-C
Confidence             234578998888542        267899999999999999999999999999999999999999999999998643 5


Q ss_pred             CCHHhhccChhHHHHHhhhcCCCCCCcCC-ccccccCcccCCCeeeCCCCEEEEcccccccCCcCcCCCCCCCCCCcccC
Q 040199          347 VSFEQLRELHYLNAAVYESMRLFPPVQFD-SKFAQEDDILPDGTFVRKGTRVTYHPYAMGRMERIWGPDCLEFKPQRWLR  425 (502)
Q Consensus       347 ~~~~~l~~lp~l~a~i~E~lRl~p~~~~~-~r~~~~~~~~~~g~~ipkGt~v~~~~~~~~~d~~~~g~~p~~F~P~Rfl~  425 (502)
                      ++++++.+||||+|||+|++|++|+++.. .|.+.+|.++ +||.|||||.|.++.+++||||++||+||++|+||||++
T Consensus       339 ~~~~~l~~l~yl~avi~E~lRl~p~~~~~~~R~~~~d~~~-~g~~IP~Gt~v~~~~~~~~rd~~~~~~~P~~F~PeR~l~  417 (499)
T PLN03234        339 VSEEDIPNLPYLKAVIKESLRLEPVIPILLHRETIADAKI-GGYDIPAKTIIQVNAWAVSRDTAAWGDNPNEFIPERFMK  417 (499)
T ss_pred             CCHHHHhcChHHHHHHHHHhccCCCccccCCcccCCCeeE-CCEEECCCCEEEEehHhhhCCcccccCChhhcCchhhcC
Confidence            89999999999999999999999999986 4777666555 999999999999999999999999988999999999997


Q ss_pred             CCCC--CCCCCCCCCCCCCCcccCccHHHHHHHHHHHHHHHhhcceEEecCCCC----CCccccceeeeccCCeeEEEEE
Q 040199          426 NGRF--VPENPFKYPVFQAGHRVCLGKDIALVEMKSVALAVVRKFNIRVSDPNQ----APRFAPGLTATVRGGLPVMVQE  499 (502)
Q Consensus       426 ~~~~--~~~~~~~~~~Fg~G~r~C~G~~~a~~~~~~~l~~ll~~f~~~~~~~~~----~~~~~~~~~~~~~~~~~v~~~~  499 (502)
                      ++..  ...+...++|||+|+|.|+|+++|++|+++++|.|+++|+++++++..    ......+++..+++.+.+.++.
T Consensus       418 ~~~~~~~~~~~~~~~pFG~G~R~C~G~~~A~~e~~~~la~ll~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  497 (499)
T PLN03234        418 EHKGVDFKGQDFELLPFGSGRRMCPAMHLGIAMVEIPFANLLYKFDWSLPKGIKPEDIKMDVMTGLAMHKKEHLVLAPTK  497 (499)
T ss_pred             CCCCcCcCCCcceEeCCCCCCCCCCChHHHHHHHHHHHHHHHHheeeeCCCCCCCCCCCcccccccccccCCCeEEEeec
Confidence            5422  122456799999999999999999999999999999999999987531    2222335666677777666665


Q ss_pred             c
Q 040199          500 R  500 (502)
Q Consensus       500 r  500 (502)
                      |
T Consensus       498 ~  498 (499)
T PLN03234        498 H  498 (499)
T ss_pred             C
Confidence            4


No 12 
>PLN00168 Cytochrome P450; Provisional
Probab=100.00  E-value=2.2e-69  Score=532.10  Aligned_cols=445  Identities=21%  Similarity=0.270  Sum_probs=336.6

Q ss_pred             CCCCCCCCCcccchhhhcc--ccchhHHHHHHHHhCCCceEEEeeeC--eEEecChhhHHHHhccCCCCCCCCchhhHhh
Q 040199           43 PWCQCDACRSYLTFSWLKD--FNNLCDWYTHLLAKSPTGTIHLHVLG--NTITSNPGNVEYILKTRFDNYPKGKPFSVIL  118 (502)
Q Consensus        43 ~~~~~P~~~p~ig~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~--~vvv~~p~~~~~i~~~~~~~~~~~~~~~~~~  118 (502)
                      +.+|+|+++|++|+.....  ..+.+..+.++.++||. ++.++.++  +++++||+++++++.++...|+.++... . 
T Consensus        35 ~lpPgp~~~pl~G~l~~~~~~~~~~~~~~~~~~~~yG~-i~~~~~g~~~~vvv~dpe~~~~il~~~~~~f~~rp~~~-~-  111 (519)
T PLN00168         35 RLPPGPPAVPLLGSLVWLTNSSADVEPLLRRLIARYGP-VVSLRVGSRLSVFVADRRLAHAALVERGAALADRPAVA-S-  111 (519)
T ss_pred             CCCcCCCCCcccccHHhhccccccHHHHHHHHHHHhCC-eEEEEcCCccEEEECCHHHHHHHHHhcCCccccCCccc-c-
Confidence            3788888999998654322  23578889999999985 78877665  8999999999999998767787554322 1 


Q ss_pred             hhccCC--cccc--cCChhHHHHHh-hhccccchhhHHHHHHHHHHHHHHHhHHHHHHHhccCCCCceeHHHHHHHHHHH
Q 040199          119 GDLLGR--GIFN--VDGDSWEFQRK-MACFELGSFNIKMYALELVTAEIRSRLIPLLSSAANKDNNILDLQDVFRRFSFD  193 (502)
Q Consensus       119 ~~~~g~--~i~~--~~g~~w~~~R~-~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~vdl~~~~~~~~~~  193 (502)
                      ....+.  +++.  .+|+.|+++|| ++.++|+.++++++. +.+ ++..+.+.+.+.+....+ +.+|+.+.+..++.+
T Consensus       112 ~~~~~~~~~~~~~~~~G~~Wk~~Rr~~~~~~fs~~~l~~~~-~~~-~~~~~~l~~~l~~~~~~~-~~v~~~~~~~~~~~~  188 (519)
T PLN00168        112 SRLLGESDNTITRSSYGPVWRLLRRNLVAETLHPSRVRLFA-PAR-AWVRRVLVDKLRREAEDA-AAPRVVETFQYAMFC  188 (519)
T ss_pred             hhhhccCCCceeCCCCCHHHHHHHHHHHHhccCHHHHHHHH-HHH-HHHHHHHHHHHHHhcCCC-CCcCHHHHHHHHHHH
Confidence            122232  3443  68999999886 799999999999986 544 445566777777644433 468999999999999


Q ss_pred             HhhhhhcCCCCcccccCCCcchHHHHHHHHHHHHHH--hhhCCCchhHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHH
Q 040199          194 SICKFSFGLDPECLMLNLPVSKFATAFDLASKLSAE--RALAPSPIVWKIKRLLNIGSEKQLKGAINLVNELAETMIHQR  271 (502)
Q Consensus       194 ~i~~~~fG~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~  271 (502)
                      +++.++||.+++...    ...+.............  ......|   .+.+.+..+...+..++.+.+.+++.++|+++
T Consensus       189 ii~~~~fG~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~p---~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~  261 (519)
T PLN00168        189 LLVLMCFGERLDEPA----VRAIAAAQRDWLLYVSKKMSVFAFFP---AVTKHLFRGRLQKALALRRRQKELFVPLIDAR  261 (519)
T ss_pred             HHHHHHcCCCcChhh----HHHHHHHHHHHHHHhcCCCCHHHhCc---chhhhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999875211    11222222222111100  0011112   11111111223455567888888999888877


Q ss_pred             HhcC----C---------CCCCcHHHHHHhcc--------CChHHHHHHHHHHHHhchhchHhHHHHHHHHHhcCcHHHH
Q 040199          272 QQMG----F---------SKKNDLLSRFMASI--------DDDKYLRDIVVSFLLAGRDTVASGLTSFFWLLSQHPEVES  330 (502)
Q Consensus       272 ~~~~----~---------~~~~dll~~ll~~~--------~~~~~i~~~~~~~~~ag~~tt~~~l~~~l~~L~~~p~~q~  330 (502)
                      ++..    .         ....|+++.+++..        .+++++.+++.++++||+|||+++++|++++|++||++|+
T Consensus       262 ~~~~~~~~~~~~~~~~~~~~~~d~l~~ll~~~~~~~~~~~lt~~~i~~~~~~l~~AG~dTTa~~l~~~l~~L~~~P~~q~  341 (519)
T PLN00168        262 REYKNHLGQGGEPPKKETTFEHSYVDTLLDIRLPEDGDRALTDDEIVNLCSEFLNAGTDTTSTALQWIMAELVKNPSIQS  341 (519)
T ss_pred             HHHhhhccccCccccccccccccHHHHHHhhhccccccCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhCHHHHH
Confidence            6421    0         01458999998642        2788999999999999999999999999999999999999


Q ss_pred             HHHHHHHhhcCCCCCCCCHHhhccChhHHHHHhhhcCCCCCCcCC-ccccccCcccCCCeeeCCCCEEEEcccccccCCc
Q 040199          331 AIRNESDKIMKPNQDLVSFEQLRELHYLNAAVYESMRLFPPVQFD-SKFAQEDDILPDGTFVRKGTRVTYHPYAMGRMER  409 (502)
Q Consensus       331 ~lr~Ei~~~~~~~~~~~~~~~l~~lp~l~a~i~E~lRl~p~~~~~-~r~~~~~~~~~~g~~ipkGt~v~~~~~~~~~d~~  409 (502)
                      |+++||+++++.+.+.++.+++.+||||+|||+||+|++|+++.. .|.+.+|.++ +||.|||||.|.++.+++||||+
T Consensus       342 kl~~Ei~~v~~~~~~~~~~~~~~~lpyl~avi~EtlRl~p~~~~~~~R~~~~d~~~-~g~~IpkGt~v~~~~~~~~~d~~  420 (519)
T PLN00168        342 KLHDEIKAKTGDDQEEVSEEDVHKMPYLKAVVLEGLRKHPPAHFVLPHKAAEDMEV-GGYLIPKGATVNFMVAEMGRDER  420 (519)
T ss_pred             HHHHHHHHHhCCCCCCCCHHHhhCChHHHHHHHHHhhcCCCCcccCCccCCCCccC-CCEEECCCCEEEEChHHHhcCcc
Confidence            999999999986555689999999999999999999999999886 5777777776 99999999999999999999999


Q ss_pred             CcCCCCCCCCCCcccCCCCC-----CCCCCCCCCCCCCCcccCccHHHHHHHHHHHHHHHhhcceEEecCCCC-CCcccc
Q 040199          410 IWGPDCLEFKPQRWLRNGRF-----VPENPFKYPVFQAGHRVCLGKDIALVEMKSVALAVVRKFNIRVSDPNQ-APRFAP  483 (502)
Q Consensus       410 ~~g~~p~~F~P~Rfl~~~~~-----~~~~~~~~~~Fg~G~r~C~G~~~a~~~~~~~l~~ll~~f~~~~~~~~~-~~~~~~  483 (502)
                      +| +||++|+||||++.+..     ...+...++|||+|+|+|||+++|++|+++++++|+++|+|+++++++ .+....
T Consensus       421 ~~-~~p~~F~PeRf~~~~~~~~~~~~~~~~~~~~pFG~G~R~C~G~~lA~~e~~~~la~ll~~f~~~~~~~~~~~~~~~~  499 (519)
T PLN00168        421 EW-ERPMEFVPERFLAGGDGEGVDVTGSREIRMMPFGVGRRICAGLGIAMLHLEYFVANMVREFEWKEVPGDEVDFAEKR  499 (519)
T ss_pred             cc-CCccccCcccCCCCCCCccccccccCCcceeCCCCCCCCCCcHHHHHHHHHHHHHHHHHHccceeCCCCcCChhhhc
Confidence            99 99999999999974221     112345799999999999999999999999999999999999976543 222223


Q ss_pred             ceeeeccCCeeEEEEEcCC
Q 040199          484 GLTATVRGGLPVMVQERGD  502 (502)
Q Consensus       484 ~~~~~~~~~~~v~~~~r~~  502 (502)
                      +++..++++++|++++|+.
T Consensus       500 ~~~~~~~~~~~~~~~~R~~  518 (519)
T PLN00168        500 EFTTVMAKPLRARLVPRRT  518 (519)
T ss_pred             eeEEeecCCcEEEEEeccC
Confidence            4677788899999999973


No 13 
>PLN02500 cytochrome P450 90B1
Probab=100.00  E-value=2.5e-70  Score=535.99  Aligned_cols=429  Identities=17%  Similarity=0.260  Sum_probs=324.8

Q ss_pred             CCCCCCCCCCcccchhhhcc----ccchhHHHHHHHHhCCCceEEEeeeC--eEEecChhhHHHHhccCCCCCCCCchhh
Q 040199           42 KPWCQCDACRSYLTFSWLKD----FNNLCDWYTHLLAKSPTGTIHLHVLG--NTITSNPGNVEYILKTRFDNYPKGKPFS  115 (502)
Q Consensus        42 ~~~~~~P~~~p~ig~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~--~vvv~~p~~~~~i~~~~~~~~~~~~~~~  115 (502)
                      .+.||||.++|++|+.+...    ...+++++.++.++||. ++.++.++  +|+++||+++++++.+++..|+++..  
T Consensus        37 ~~~PPgp~~~PiiGn~~~~~~~~~~~~~~~~~~~~~~~yG~-v~~~~~g~~~~vvv~~p~~~~~vl~~~~~~f~~~~~--  113 (490)
T PLN02500         37 FNLPPGNMGWPFLGETIGYLKPYSATSIGEFMEQHISRYGK-IYRSNLFGEPTIVSADAGLNRFILQNEGRLFECSYP--  113 (490)
T ss_pred             CCCCCCCcCCCchhhHHHHHhhcccCChHHHHHHHHHHhcc-cccccccCCCeEEecCHHHHHHHHhCCCCeEEeeCc--
Confidence            34788999999998654221    23577889999999985 67776655  89999999999999987666653321  


Q ss_pred             HhhhhccC-CcccccCChhHHHHHhhhccccchhhHHHHHHHHHHHHHHHhHHHHHHHhccCCCCceeHHHHHHHHHHHH
Q 040199          116 VILGDLLG-RGIFNVDGDSWEFQRKMACFELGSFNIKMYALELVTAEIRSRLIPLLSSAANKDNNILDLQDVFRRFSFDS  194 (502)
Q Consensus       116 ~~~~~~~g-~~i~~~~g~~w~~~R~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~vdl~~~~~~~~~~~  194 (502)
                      .......| .+++..+|+.||++|+++.+.|+..+++.+..+.+ ++....+.+.+   .. + +.+|+.+.+..+++++
T Consensus       114 ~~~~~~~g~~~~~~~~g~~wr~~Rk~~~~~f~~~~l~~~~~~~~-~~~~~~~~~~~---~~-~-~~vd~~~~~~~~~~~v  187 (490)
T PLN02500        114 RSIGGILGKWSMLVLVGDMHRDMRSISLNFLSHARLRTHLLKEV-ERHTLLVLDSW---KE-N-STFSAQDEAKKFTFNL  187 (490)
T ss_pred             hHHHHHhCcccccccCCHHHHHHHHHHHHhcChHHHHHHHHHHH-HHHHHHHHHHh---CC-C-CCEEehHHHHHHHHHH
Confidence            11222334 36888899999999999999999988876431333 33223333333   22 2 4799999999999999


Q ss_pred             hhhhhcCCCCcccccCCCcchHHHHHHHHHHHHHHhhhCCCchhHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHhc
Q 040199          195 ICKFSFGLDPECLMLNLPVSKFATAFDLASKLSAERALAPSPIVWKIKRLLNIGSEKQLKGAINLVNELAETMIHQRQQM  274 (502)
Q Consensus       195 i~~~~fG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~  274 (502)
                      +++++||.+.+..+    ...+...+.........     .+.      .++....++..++.+.+.+++.++|+++++.
T Consensus       188 i~~~~fg~~~~~~~----~~~~~~~~~~~~~~~~~-----~~~------~~p~~~~~~~~~~~~~~~~~~~~~i~~~~~~  252 (490)
T PLN02500        188 MAKHIMSMDPGEEE----TEQLKKEYVTFMKGVVS-----APL------NFPGTAYRKALKSRATILKFIERKMEERIEK  252 (490)
T ss_pred             HHHHHhCCCCCchH----HHHHHHHHHHHHhhhhc-----chh------cCCCcccHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            99999998753211    12222323222211100     000      1111223455567788888888888877642


Q ss_pred             ---CC--CCCCcHHHHHHhcc-CChHHHHHHHHHHHHhchhchHhHHHHHHHHHhcCcHHHHHHHHHHHhhcCC----CC
Q 040199          275 ---GF--SKKNDLLSRFMASI-DDDKYLRDIVVSFLLAGRDTVASGLTSFFWLLSQHPEVESAIRNESDKIMKP----NQ  344 (502)
Q Consensus       275 ---~~--~~~~dll~~ll~~~-~~~~~i~~~~~~~~~ag~~tt~~~l~~~l~~L~~~p~~q~~lr~Ei~~~~~~----~~  344 (502)
                         +.  ....|+++.+++.. .+++++.+++.++++||+|||+++++|++++|++||++|+|+|+||+++++.    ++
T Consensus       253 ~~~~~~~~~~~d~l~~ll~~~~ls~~~i~~~~~~ll~AG~dTta~tl~~~l~~L~~~Pevq~kl~~Ei~~v~~~~~~~~~  332 (490)
T PLN02500        253 LKEEDESVEEDDLLGWVLKHSNLSTEQILDLILSLLFAGHETSSVAIALAIFFLQGCPKAVQELREEHLEIARAKKQSGE  332 (490)
T ss_pred             hhcccCCCCcchHHHHHHhccCCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHhhccccCCC
Confidence               11  13569999999865 3899999999999999999999999999999999999999999999998742    22


Q ss_pred             CCCCHHhhccChhHHHHHhhhcCCCCCCcCCccccccCcccCCCeeeCCCCEEEEcccccccCCcCcCCCCCCCCCCccc
Q 040199          345 DLVSFEQLRELHYLNAAVYESMRLFPPVQFDSKFAQEDDILPDGTFVRKGTRVTYHPYAMGRMERIWGPDCLEFKPQRWL  424 (502)
Q Consensus       345 ~~~~~~~l~~lp~l~a~i~E~lRl~p~~~~~~r~~~~~~~~~~g~~ipkGt~v~~~~~~~~~d~~~~g~~p~~F~P~Rfl  424 (502)
                      ..++++++.+||||+|||+||+|++|+++...|.+.+|.++ +||.|||||.|.++.+++||||++| +||++|+||||+
T Consensus       333 ~~~~~~d~~~lpyl~avikEtlRl~P~~~~~~R~~~~d~~~-~G~~IPkGt~V~~~~~~~hrdp~~~-~dP~~F~PeRfl  410 (490)
T PLN02500        333 SELNWEDYKKMEFTQCVINETLRLGNVVRFLHRKALKDVRY-KGYDIPSGWKVLPVIAAVHLDSSLY-DQPQLFNPWRWQ  410 (490)
T ss_pred             CCCCHHHhccCHHHHHHHHHHHhcCCCccCeeeEeCCCcee-CCEEECCCCEEEechhhcccCcccC-CCccccChhhcc
Confidence            35899999999999999999999999999888888888776 9999999999999999999999999 999999999999


Q ss_pred             CCCCCCC------CCCCCCCCCCCCcccCccHHHHHHHHHHHHHHHhhcceEEecCCCCCCccccceeeeccCCeeEEEE
Q 040199          425 RNGRFVP------ENPFKYPVFQAGHRVCLGKDIALVEMKSVALAVVRKFNIRVSDPNQAPRFAPGLTATVRGGLPVMVQ  498 (502)
Q Consensus       425 ~~~~~~~------~~~~~~~~Fg~G~r~C~G~~~a~~~~~~~l~~ll~~f~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~  498 (502)
                      +++....      .++..++|||+|+|.|+|+++|++|+++++++++++|++++.+++.... . ..+ .+++|++|+++
T Consensus       411 ~~~~~~~~~~~~~~~~~~~lpFG~G~R~CiG~~~A~~el~~~la~ll~~f~~~~~~~~~~~~-~-~~~-~~~~~l~~~~~  487 (490)
T PLN02500        411 QNNNRGGSSGSSSATTNNFMPFGGGPRLCAGSELAKLEMAVFIHHLVLNFNWELAEADQAFA-F-PFV-DFPKGLPIRVR  487 (490)
T ss_pred             CCCcccccccccCCCCCCCcCCCCCCCCCCcHHHHHHHHHHHHHHHHhccEEEEcCCCccee-c-ccc-cCCCCceEEEE
Confidence            6532111      2456799999999999999999999999999999999999977643221 2 222 45679999987


Q ss_pred             E
Q 040199          499 E  499 (502)
Q Consensus       499 ~  499 (502)
                      +
T Consensus       488 ~  488 (490)
T PLN02500        488 R  488 (490)
T ss_pred             e
Confidence            6


No 14 
>PLN02687 flavonoid 3'-monooxygenase
Probab=100.00  E-value=2.4e-69  Score=531.63  Aligned_cols=447  Identities=20%  Similarity=0.241  Sum_probs=341.2

Q ss_pred             CCCCCCCCcccchhhhccccchhHHHHHHHHhCCCceEEEeeeC--eEEecChhhHHHHhccCCCCCCCCchhhH--hhh
Q 040199           44 WCQCDACRSYLTFSWLKDFNNLCDWYTHLLAKSPTGTIHLHVLG--NTITSNPGNVEYILKTRFDNYPKGKPFSV--ILG  119 (502)
Q Consensus        44 ~~~~P~~~p~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~vvv~~p~~~~~i~~~~~~~~~~~~~~~~--~~~  119 (502)
                      .||+|.++|++|+.+. ...+.+..+.++.++||+ ++.++.++  +++++||+++++++.++...|++++....  .+.
T Consensus        35 ~pPgp~~~P~iG~~~~-~~~~~~~~~~~~~~~yG~-i~~~~~g~~~~vvv~~p~~~~~il~~~~~~f~~r~~~~~~~~~~  112 (517)
T PLN02687         35 LPPGPRGWPVLGNLPQ-LGPKPHHTMAALAKTYGP-LFRLRFGFVDVVVAASASVAAQFLRTHDANFSNRPPNSGAEHMA  112 (517)
T ss_pred             CCccCCCCCccccHHh-cCCchhHHHHHHHHHhCC-eeEEecCCceEEEeCCHHHHHHHHHhcchhhhcCCCccchhhhc
Confidence            6788889999976543 345688999999999985 88887665  89999999999999987677876544321  111


Q ss_pred             hccCCcccccCChhHHHHHhhhc-cccchhhHHHHHHHHHHHHHHHhHHHHHHHhccCCCCceeHHHHHHHHHHHHhhhh
Q 040199          120 DLLGRGIFNVDGDSWEFQRKMAC-FELGSFNIKMYALELVTAEIRSRLIPLLSSAANKDNNILDLQDVFRRFSFDSICKF  198 (502)
Q Consensus       120 ~~~g~~i~~~~g~~w~~~R~~~~-~~~~~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~vdl~~~~~~~~~~~i~~~  198 (502)
                      ...+.+++..+|+.|+++|+++. +.|+.++++.+. +.+ ++..+.+.+.+++.. ++ +++|+.+.+..+++|+++.+
T Consensus       113 ~~~~~~l~~~~g~~Wk~~Rr~l~~~~fs~~~l~~~~-~~i-~~~~~~l~~~l~~~~-~~-~~vd~~~~~~~~t~dvi~~~  188 (517)
T PLN02687        113 YNYQDLVFAPYGPRWRALRKICAVHLFSAKALDDFR-HVR-EEEVALLVRELARQH-GT-APVNLGQLVNVCTTNALGRA  188 (517)
T ss_pred             cCCceeEeCCCCHHHHHHHHHHHHHhCCHHHHHHhH-HHH-HHHHHHHHHHHHHhc-CC-CceeHHHHHHHHHHHHHHHH
Confidence            11123466778999999999998 899999998885 444 555566777776543 23 58999999999999999999


Q ss_pred             hcCCCCcccccCCCcchHHHHHHHHHHHHHHhhhCCCchhHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHhcC---
Q 040199          199 SFGLDPECLMLNLPVSKFATAFDLASKLSAERALAPSPIVWKIKRLLNIGSEKQLKGAINLVNELAETMIHQRQQMG---  275 (502)
Q Consensus       199 ~fG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~---  275 (502)
                      +||.++...+.......+.+.+..+......  .....+++.+.++...+..++..+..+.+.+++.++|+++++..   
T Consensus       189 ~fG~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~P~l~~l~~~~~~~~~~~~~~~~~~~~~~~i~~r~~~~~~~  266 (517)
T PLN02687        189 MVGRRVFAGDGDEKAREFKEMVVELMQLAGV--FNVGDFVPALRWLDLQGVVGKMKRLHRRFDAMMNGIIEEHKAAGQTG  266 (517)
T ss_pred             HhCccccccCCcchHHHHHHHHHHHHHHhcc--CcHHHHhhhHHHhCcccHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence            9999875433222234555555544432211  10001112122221112234566678888899999998887642   


Q ss_pred             CCCCCcHHHHHHhcc-----------CChHHHHHHHHHHHHhchhchHhHHHHHHHHHhcCcHHHHHHHHHHHhhcCCCC
Q 040199          276 FSKKNDLLSRFMASI-----------DDDKYLRDIVVSFLLAGRDTVASGLTSFFWLLSQHPEVESAIRNESDKIMKPNQ  344 (502)
Q Consensus       276 ~~~~~dll~~ll~~~-----------~~~~~i~~~~~~~~~ag~~tt~~~l~~~l~~L~~~p~~q~~lr~Ei~~~~~~~~  344 (502)
                      .....|+++.+++..           .+++++.+++..+++||+|||+++++|++++|++||++|+|+++||+++++.+.
T Consensus       267 ~~~~~d~l~~ll~~~~~~~~~~~~~~l~~~~i~~~~~~~~~AG~eTta~~l~~~l~~L~~~P~~~~kl~~Ei~~~~~~~~  346 (517)
T PLN02687        267 SEEHKDLLSTLLALKREQQADGEGGRITDTEIKALLLNLFTAGTDTTSSTVEWAIAELIRHPDILKKAQEELDAVVGRDR  346 (517)
T ss_pred             CcccccHHHHHHHhhccccccccccCCCHHHHHHHHHHHhccccCchHHHHHHHHHHHHhCHHHHHHHHHHHHHHcCCCC
Confidence            234579999999642           267899999999999999999999999999999999999999999999987653


Q ss_pred             CCCCHHhhccChhHHHHHhhhcCCCCCCcC-CccccccCcccCCCeeeCCCCEEEEcccccccCCcCcCCCCCCCCCCcc
Q 040199          345 DLVSFEQLRELHYLNAAVYESMRLFPPVQF-DSKFAQEDDILPDGTFVRKGTRVTYHPYAMGRMERIWGPDCLEFKPQRW  423 (502)
Q Consensus       345 ~~~~~~~l~~lp~l~a~i~E~lRl~p~~~~-~~r~~~~~~~~~~g~~ipkGt~v~~~~~~~~~d~~~~g~~p~~F~P~Rf  423 (502)
                       .++.+++.+||||+|||+||+|++|+++. ..|.+.+|.++ +||.|||||.|.++.+++||||++| +||++|+||||
T Consensus       347 -~~~~~~l~~lpyl~a~i~EtlRl~p~~~~~~~R~~~~d~~~-~g~~ip~Gt~v~~~~~~~h~d~~~~-~dp~~F~PeRf  423 (517)
T PLN02687        347 -LVSESDLPQLTYLQAVIKETFRLHPSTPLSLPRMAAEECEI-NGYHIPKGATLLVNVWAIARDPEQW-PDPLEFRPDRF  423 (517)
T ss_pred             -CCCHHHhhhCHHHHHHHHHHHccCCCccccccccCCCCeeE-CCEEECCCCEEEEecHHhcCCcccC-CCcccCCchhc
Confidence             58999999999999999999999999997 46888777666 9999999999999999999999999 99999999999


Q ss_pred             cCCCCCC----CCCCCCCCCCCCCcccCccHHHHHHHHHHHHHHHhhcceEEecCCCCC--Cccc--cceeeeccCCeeE
Q 040199          424 LRNGRFV----PENPFKYPVFQAGHRVCLGKDIALVEMKSVALAVVRKFNIRVSDPNQA--PRFA--PGLTATVRGGLPV  495 (502)
Q Consensus       424 l~~~~~~----~~~~~~~~~Fg~G~r~C~G~~~a~~~~~~~l~~ll~~f~~~~~~~~~~--~~~~--~~~~~~~~~~~~v  495 (502)
                      ++++...    ..+...++|||+|+|.|+|+++|++|+++++++||++|++++.++...  ....  .+.+..+..++.+
T Consensus       424 l~~~~~~~~~~~~~~~~~~pFG~G~r~C~G~~~A~~e~~~~la~ll~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  503 (517)
T PLN02687        424 LPGGEHAGVDVKGSDFELIPFGAGRRICAGLSWGLRMVTLLTATLVHAFDWELADGQTPDKLNMEEAYGLTLQRAVPLMV  503 (517)
T ss_pred             CCCCCccccccCCCceeeCCCCCCCCCCCChHHHHHHHHHHHHHHHHhcceecCCCCCcccCCcccccceeeecCCCeEE
Confidence            9643211    123457899999999999999999999999999999999999765321  1112  2344455667888


Q ss_pred             EEEEcC
Q 040199          496 MVQERG  501 (502)
Q Consensus       496 ~~~~r~  501 (502)
                      ++++|.
T Consensus       504 ~~~~R~  509 (517)
T PLN02687        504 HPRPRL  509 (517)
T ss_pred             eeccCC
Confidence            888873


No 15 
>PLN00110 flavonoid 3',5'-hydroxylase (F3'5'H); Provisional
Probab=100.00  E-value=2.6e-69  Score=527.96  Aligned_cols=448  Identities=19%  Similarity=0.226  Sum_probs=342.1

Q ss_pred             CCCCCCCCCCcccchhhhccccchhHHHHHHHHhCCCceEEEeeeC--eEEecChhhHHHHhccCCCCCCCCchhhHhhh
Q 040199           42 KPWCQCDACRSYLTFSWLKDFNNLCDWYTHLLAKSPTGTIHLHVLG--NTITSNPGNVEYILKTRFDNYPKGKPFSVILG  119 (502)
Q Consensus        42 ~~~~~~P~~~p~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~vvv~~p~~~~~i~~~~~~~~~~~~~~~~~~~  119 (502)
                      .+.||+|+++|++|+.+ ....+.+.++.++.++||+ ++.++.++  .|+++||+.+++++.++...|++++.......
T Consensus        30 ~~~pPgp~~~Pl~G~l~-~~~~~~~~~~~~~~~~yG~-i~~~~~g~~~~vvv~dpe~~~~vl~~~~~~f~~r~~~~~~~~  107 (504)
T PLN00110         30 RKLPPGPRGWPLLGALP-LLGNMPHVALAKMAKRYGP-VMFLKMGTNSMVVASTPEAARAFLKTLDINFSNRPPNAGATH  107 (504)
T ss_pred             CCCcccCCCCCeeechh-hcCCchHHHHHHHHHHhCC-eEEEEcCCccEEEECCHHHHHHHHHhcchhhcCCCCccchhh
Confidence            34888999999997543 3345678999999999985 78887765  89999999999999987667876554322221


Q ss_pred             hccC--CcccccCChhHHHHHhhhcc-ccchhhHHHHHHHHHHHHHHHhHHHHHHHhccCCCCceeHHHHHHHHHHHHhh
Q 040199          120 DLLG--RGIFNVDGDSWEFQRKMACF-ELGSFNIKMYALELVTAEIRSRLIPLLSSAANKDNNILDLQDVFRRFSFDSIC  196 (502)
Q Consensus       120 ~~~g--~~i~~~~g~~w~~~R~~~~~-~~~~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~vdl~~~~~~~~~~~i~  196 (502)
                      ...+  .+++..+|+.|+++|+.+.+ .|+.++++.+. +.+.+++ +.+.+.+.+...++ +++|+.+++..+++++|+
T Consensus       108 ~~~~~~~~l~~~~g~~w~~~Rr~~~~~~f~~~~l~~~~-~~i~~~~-~~~~~~l~~~~~~g-~~~~~~~~~~~~~~~vi~  184 (504)
T PLN00110        108 LAYGAQDMVFADYGPRWKLLRKLSNLHMLGGKALEDWS-QVRTVEL-GHMLRAMLELSQRG-EPVVVPEMLTFSMANMIG  184 (504)
T ss_pred             hccCCCceeeCCCCHHHHHHHHHHHHHhCCHHHHHHhh-HHHHHHH-HHHHHHHHHhccCC-CcEeHHHHHHHHHHHHHH
Confidence            2222  35777889999999999984 78988898886 5555555 44666665544444 689999999999999999


Q ss_pred             hhhcCCCCcccccCCCcchHHHHHHHHHHHHHHh-hhCCCchhHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 040199          197 KFSFGLDPECLMLNLPVSKFATAFDLASKLSAER-ALAPSPIVWKIKRLLNIGSEKQLKGAINLVNELAETMIHQRQQMG  275 (502)
Q Consensus       197 ~~~fG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~  275 (502)
                      .++||.++.. .......++.+++.......... .....|.   +.++...+..+...+..+.+.+++++.++++++..
T Consensus       185 ~~~fg~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~---l~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~  260 (504)
T PLN00110        185 QVILSRRVFE-TKGSESNEFKDMVVELMTTAGYFNIGDFIPS---IAWMDIQGIERGMKHLHKKFDKLLTRMIEEHTASA  260 (504)
T ss_pred             HHHhCCcccc-cCchhHHHHHHHHHHHHHHhccccHHHHcch---HhhhCcchHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence            9999998621 11112245566555443321110 0111121   11111112234456667788888888888776532


Q ss_pred             --CCCCCcHHHHHHhcc-------CChHHHHHHHHHHHHhchhchHhHHHHHHHHHhcCcHHHHHHHHHHHhhcCCCCCC
Q 040199          276 --FSKKNDLLSRFMASI-------DDDKYLRDIVVSFLLAGRDTVASGLTSFFWLLSQHPEVESAIRNESDKIMKPNQDL  346 (502)
Q Consensus       276 --~~~~~dll~~ll~~~-------~~~~~i~~~~~~~~~ag~~tt~~~l~~~l~~L~~~p~~q~~lr~Ei~~~~~~~~~~  346 (502)
                        .....|+++.+++..       .+++++.++++++++||+|||+++++|++++|++||++|+|+++|++++++.+. .
T Consensus       261 ~~~~~~~d~l~~ll~~~~~~~~~~l~~~~i~~~~~~~~~Ag~dTta~~l~~~l~~L~~~P~~~~kl~~Ei~~~~~~~~-~  339 (504)
T PLN00110        261 HERKGNPDFLDVVMANQENSTGEKLTLTNIKALLLNLFTAGTDTSSSVIEWSLAEMLKNPSILKRAHEEMDQVIGRNR-R  339 (504)
T ss_pred             cccccCCChhhHHhhcccccCCCCCCHHHHHHHHHhhhcccccchHHHHHHHHHHHHhCHHHHHHHHHHHHHHhCCCC-C
Confidence              123468999999643       267899999999999999999999999999999999999999999999998654 5


Q ss_pred             CCHHhhccChhHHHHHhhhcCCCCCCcCC-ccccccCcccCCCeeeCCCCEEEEcccccccCCcCcCCCCCCCCCCcccC
Q 040199          347 VSFEQLRELHYLNAAVYESMRLFPPVQFD-SKFAQEDDILPDGTFVRKGTRVTYHPYAMGRMERIWGPDCLEFKPQRWLR  425 (502)
Q Consensus       347 ~~~~~l~~lp~l~a~i~E~lRl~p~~~~~-~r~~~~~~~~~~g~~ipkGt~v~~~~~~~~~d~~~~g~~p~~F~P~Rfl~  425 (502)
                      ++++++++||||+|||+||+|++|+++.. .|.+.+|.++ +||.|||||.|.++.+++|+||++| +||++|+||||++
T Consensus       340 ~~~~~~~~lpyl~avi~EtlRl~p~~~~~~~R~~~~d~~~-~g~~Ip~Gt~V~~~~~~~h~d~~~~-~dP~~F~PeRfl~  417 (504)
T PLN00110        340 LVESDLPKLPYLQAICKESFRKHPSTPLNLPRVSTQACEV-NGYYIPKNTRLSVNIWAIGRDPDVW-ENPEEFRPERFLS  417 (504)
T ss_pred             CCHHHhhcChHHHHHHHHHhcCCCCcccccccccCCCeee-CCEEECCCCEEEEeHHHhcCChhhc-CCcccCCcccccC
Confidence            89999999999999999999999999984 5877777665 9999999999999999999999999 9999999999996


Q ss_pred             CCCCCC---CCCCCCCCCCCCcccCccHHHHHHHHHHHHHHHhhcceEEecCCCCCC-ccccceeeeccCCeeEEEEEcC
Q 040199          426 NGRFVP---ENPFKYPVFQAGHRVCLGKDIALVEMKSVALAVVRKFNIRVSDPNQAP-RFAPGLTATVRGGLPVMVQERG  501 (502)
Q Consensus       426 ~~~~~~---~~~~~~~~Fg~G~r~C~G~~~a~~~~~~~l~~ll~~f~~~~~~~~~~~-~~~~~~~~~~~~~~~v~~~~r~  501 (502)
                      ++....   .+...++|||+|+|.|+|+++|++|+++++++|+++|++++.++++.. ....+.+..|+.++.+.+++|.
T Consensus       418 ~~~~~~~~~~~~~~~~pFG~G~R~C~G~~~A~~e~~~~la~ll~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~  497 (504)
T PLN00110        418 EKNAKIDPRGNDFELIPFGAGRRICAGTRMGIVLVEYILGTLVHSFDWKLPDGVELNMDEAFGLALQKAVPLSAMVTPRL  497 (504)
T ss_pred             CCCcccccCCCeeeEeCCCCCCCCCCcHHHHHHHHHHHHHHHHHhceeecCCCCccCcccccccccccCCCceEeeccCC
Confidence            432111   123478999999999999999999999999999999999997754321 1234577788999999999984


No 16 
>PLN02394 trans-cinnamate 4-monooxygenase
Probab=100.00  E-value=5.5e-69  Score=529.24  Aligned_cols=458  Identities=16%  Similarity=0.186  Sum_probs=325.1

Q ss_pred             HHHHHhcCCCCCCCCCCcccchhhhccccchhHHHHHHHHhCCCceEEEeeeC--eEEecChhhHHHHhccCCCCCCCCc
Q 040199           35 LIFVLRLKPWCQCDACRSYLTFSWLKDFNNLCDWYTHLLAKSPTGTIHLHVLG--NTITSNPGNVEYILKTRFDNYPKGK  112 (502)
Q Consensus        35 ~~~~~~~~~~~~~P~~~p~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~vvv~~p~~~~~i~~~~~~~~~~~~  112 (502)
                      +.+..++...+|+|...|++|+.+.......+..+.++.++||. +++++.++  .|+++||+.+++++.++...|.++.
T Consensus        22 ~~~~~~~~~~pPgp~~~p~~g~l~~~~~~~~~~~~~~~~~~yG~-v~~i~~g~~~~v~v~dpe~i~~il~~~~~~~~~r~  100 (503)
T PLN02394         22 SKLRGKKLKLPPGPAAVPIFGNWLQVGDDLNHRNLAEMAKKYGD-VFLLRMGQRNLVVVSSPELAKEVLHTQGVEFGSRT  100 (503)
T ss_pred             HHHhcCcCCCCcCCCCCCeeeeHHhcCCCchhHHHHHHHHHhCC-eEEEEcCCeeEEEeCCHHHHHHHHHhCCccccCCC
Confidence            33334444488899999999765443323357899999999985 77777654  8999999999999987656676432


Q ss_pred             hhhHhhhhccC---CcccccCChhHHHHHhhhc-cccchhhHHHHHHHHHHHHHHHhHHHHHHHhccCCCCceeHHHHHH
Q 040199          113 PFSVILGDLLG---RGIFNVDGDSWEFQRKMAC-FELGSFNIKMYALELVTAEIRSRLIPLLSSAANKDNNILDLQDVFR  188 (502)
Q Consensus       113 ~~~~~~~~~~g---~~i~~~~g~~w~~~R~~~~-~~~~~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~vdl~~~~~  188 (502)
                      . ......+.|   .+++..+|+.|+++|+.+. +.|+.+++..+. +.+.+++ +.+++.+.+..+.+++.+|+.+.+.
T Consensus       101 ~-~~~~~~~~g~~~~~l~~~~g~~w~~~Rk~~~~~~f~~~~l~~~~-~~i~~~v-~~lv~~l~~~~~~~~~~v~~~~~~~  177 (503)
T PLN02394        101 R-NVVFDIFTGKGQDMVFTVYGDHWRKMRRIMTVPFFTNKVVQQYR-YGWEEEA-DLVVEDVRANPEAATEGVVIRRRLQ  177 (503)
T ss_pred             C-cchHhHhccCCCceeecCCCHHHHHHHHHHHHHhcChHHHHHhh-HHHHHHH-HHHHHHHHHhhhccCCcEecHHHHH
Confidence            1 112222223   2477788999999999886 889988888875 5554444 5566667654332224699999999


Q ss_pred             HHHHHHhhhhhcCCCCcccccCCCcchHHHHHHHHHHHHHHhhhCCCchhHHHHHhcccchHHHHHHHHHH-HHHHHHHH
Q 040199          189 RFSFDSICKFSFGLDPECLMLNLPVSKFATAFDLASKLSAERALAPSPIVWKIKRLLNIGSEKQLKGAINL-VNELAETM  267 (502)
Q Consensus       189 ~~~~~~i~~~~fG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~  267 (502)
                      .+++|++++++||.+++..+.. ....+....................+++.+.+.+. ...+........ ...+....
T Consensus       178 ~~~~dvi~~~~fG~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~  255 (503)
T PLN02394        178 LMMYNIMYRMMFDRRFESEDDP-LFLKLKALNGERSRLAQSFEYNYGDFIPILRPFLR-GYLKICQDVKERRLALFKDYF  255 (503)
T ss_pred             HHHHHHHHHHHhCCCcccccch-hHHHHHHHHHHHHHHhcccccchhhhchHHHHHhh-HHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999998653321 11122122111111110000000011111111110 001111111111 22233344


Q ss_pred             HHHHHhc------CCCCCCcHHHHHHhccC----ChHHHHHHHHHHHHhchhchHhHHHHHHHHHhcCcHHHHHHHHHHH
Q 040199          268 IHQRQQM------GFSKKNDLLSRFMASID----DDKYLRDIVVSFLLAGRDTVASGLTSFFWLLSQHPEVESAIRNESD  337 (502)
Q Consensus       268 i~~~~~~------~~~~~~dll~~ll~~~~----~~~~i~~~~~~~~~ag~~tt~~~l~~~l~~L~~~p~~q~~lr~Ei~  337 (502)
                      ++++++.      ......|+++.+++...    +++++..++.++++||+|||+++++|++++|++||++|+|||+||+
T Consensus       256 i~~~~~~~~~~~~~~~~~~d~l~~ll~~~~~~~l~~~~i~~~~~~~~~AG~dTTa~tl~~~l~~L~~~P~vq~kl~~Ei~  335 (503)
T PLN02394        256 VDERKKLMSAKGMDKEGLKCAIDHILEAQKKGEINEDNVLYIVENINVAAIETTLWSIEWGIAELVNHPEIQKKLRDELD  335 (503)
T ss_pred             HHHHHHHhhhccCCcchhhhHHHHHHhccccCCCCHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHcCHHHHHHHHHHHH
Confidence            5555431      11234689999997532    6788999999999999999999999999999999999999999999


Q ss_pred             hhcCCCCCCCCHHhhccChhHHHHHhhhcCCCCCCcCCc-cccccCcccCCCeeeCCCCEEEEcccccccCCcCcCCCCC
Q 040199          338 KIMKPNQDLVSFEQLRELHYLNAAVYESMRLFPPVQFDS-KFAQEDDILPDGTFVRKGTRVTYHPYAMGRMERIWGPDCL  416 (502)
Q Consensus       338 ~~~~~~~~~~~~~~l~~lp~l~a~i~E~lRl~p~~~~~~-r~~~~~~~~~~g~~ipkGt~v~~~~~~~~~d~~~~g~~p~  416 (502)
                      ++++.+. .++++++++||||+|||+||+|++|++|... |.+.+|.++ +||.|||||.|.++.+++||||++| +||+
T Consensus       336 ~v~~~~~-~~~~~~l~~lpyl~avi~EtlRl~p~~~~~~~r~~~~d~~i-~g~~IP~Gt~V~~~~~~~~rd~~~~-~~P~  412 (503)
T PLN02394        336 TVLGPGN-QVTEPDTHKLPYLQAVVKETLRLHMAIPLLVPHMNLEDAKL-GGYDIPAESKILVNAWWLANNPELW-KNPE  412 (503)
T ss_pred             HHhCCCC-CCCHhHHhhCHHHHHHHHHHHhcCCCcccccceecCCCccc-CCEEeCCCCEEEEchHHHhCCcccC-CCcc
Confidence            9998643 5899999999999999999999999999875 666666554 9999999999999999999999999 9999


Q ss_pred             CCCCCcccCCCC--CCCCCCCCCCCCCCCcccCccHHHHHHHHHHHHHHHhhcceEEecCCCCCCccc--c-ceeeeccC
Q 040199          417 EFKPQRWLRNGR--FVPENPFKYPVFQAGHRVCLGKDIALVEMKSVALAVVRKFNIRVSDPNQAPRFA--P-GLTATVRG  491 (502)
Q Consensus       417 ~F~P~Rfl~~~~--~~~~~~~~~~~Fg~G~r~C~G~~~a~~~~~~~l~~ll~~f~~~~~~~~~~~~~~--~-~~~~~~~~  491 (502)
                      +|+||||++++.  ....+...++|||+|+|+|+|+++|++|+++++|.++++|++++.++.+.....  - +++...+.
T Consensus       413 ~F~PeRwl~~~~~~~~~~~~~~~~pFg~G~R~CiG~~~A~~e~~~~la~ll~~f~~~~~~~~~~~~~~~~~~~~~~~~~~  492 (503)
T PLN02394        413 EFRPERFLEEEAKVEANGNDFRFLPFGVGRRSCPGIILALPILGIVLGRLVQNFELLPPPGQSKIDVSEKGGQFSLHIAK  492 (503)
T ss_pred             ccCccccCCCCCcccccCCCCceeCCCCCCCCCCCHHHHHHHHHHHHHHHHHHceeEeCCCCCcCccccccCceeeccCC
Confidence            999999986432  112245679999999999999999999999999999999999987765322222  2 35555677


Q ss_pred             CeeEEEEEcC
Q 040199          492 GLPVMVQERG  501 (502)
Q Consensus       492 ~~~v~~~~r~  501 (502)
                      .+.|++.+|.
T Consensus       493 ~~~~~~~~r~  502 (503)
T PLN02394        493 HSTVVFKPRS  502 (503)
T ss_pred             CceEEeecCC
Confidence            9999999996


No 17 
>PLN02183 ferulate 5-hydroxylase
Probab=100.00  E-value=2.9e-69  Score=530.90  Aligned_cols=444  Identities=20%  Similarity=0.262  Sum_probs=333.2

Q ss_pred             HHHhcCCCCCCCCCCcccchhhhccccchhHHHHHHHHhCCCceEEEeeeC--eEEecChhhHHHHhccCCCCCCCCchh
Q 040199           37 FVLRLKPWCQCDACRSYLTFSWLKDFNNLCDWYTHLLAKSPTGTIHLHVLG--NTITSNPGNVEYILKTRFDNYPKGKPF  114 (502)
Q Consensus        37 ~~~~~~~~~~~P~~~p~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~vvv~~p~~~~~i~~~~~~~~~~~~~~  114 (502)
                      +..++.+.+|+|.++|++|+.+. .....+.++.++.++||+ +++++.++  +|+++||+.+++++.++...|++++..
T Consensus        30 ~~~~~~~~ppgp~~~Pl~G~l~~-~~~~~~~~~~~~~~~yG~-i~~~~~g~~~~vvv~dp~~i~~il~~~~~~f~~r~~~  107 (516)
T PLN02183         30 RLRRRLPYPPGPKGLPIIGNMLM-MDQLTHRGLANLAKQYGG-LFHMRMGYLHMVAVSSPEVARQVLQVQDSVFSNRPAN  107 (516)
T ss_pred             hccCCCCCCcCCCCCCeeccHHh-cCCcchHHHHHHHHHhCC-eeEEEeCCcceEEeCCHHHHHHHHHhhhhhhcCCCcc
Confidence            33444558889999999986543 334467789999999985 78887766  899999999999999876667655432


Q ss_pred             hHhhhhcc---CCcccccCChhHHHHHhh-hccccchhhHHHHHHHHHHHHHHHhHHHHHHHhccCCCCceeHHHHHHHH
Q 040199          115 SVILGDLL---GRGIFNVDGDSWEFQRKM-ACFELGSFNIKMYALELVTAEIRSRLIPLLSSAANKDNNILDLQDVFRRF  190 (502)
Q Consensus       115 ~~~~~~~~---g~~i~~~~g~~w~~~R~~-~~~~~~~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~vdl~~~~~~~  190 (502)
                      .. .....   +.+++..+|+.|+++|++ +.++|+...++.+.  .+.+++ +.+++.+.+  ..+ +++|+.+.+..+
T Consensus       108 ~~-~~~~~~~~~~~l~~~~g~~w~~~Rr~~~~~~f~~~~l~~~~--~~~~~~-~~~~~~l~~--~~~-~~v~~~~~~~~~  180 (516)
T PLN02183        108 IA-ISYLTYDRADMAFAHYGPFWRQMRKLCVMKLFSRKRAESWA--SVRDEV-DSMVRSVSS--NIG-KPVNIGELIFTL  180 (516)
T ss_pred             cc-hhccccCCCceEeCCCChHHHHHHHHHHHHhcCHHHHHHHH--HHHHHH-HHHHHHHHh--cCC-CcEeHHHHHHHH
Confidence            11 11121   345788899999999998 57899988888874  355554 556666643  123 689999999999


Q ss_pred             HHHHhhhhhcCCCCcccccCCCcchHHHHHHHHHHHHHH-hhhCCCchhHHHHHhcccchHHHHHHHHHHHHHHHHHHHH
Q 040199          191 SFDSICKFSFGLDPECLMLNLPVSKFATAFDLASKLSAE-RALAPSPIVWKIKRLLNIGSEKQLKGAINLVNELAETMIH  269 (502)
Q Consensus       191 ~~~~i~~~~fG~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~  269 (502)
                      +++++++++||.+.+..+     .++.+.+..+...... ......|+.   ..+.+....++..+..+.+.+++.++|+
T Consensus       181 ~~~vi~~~~fG~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~p~~---~~~~~~~~~~~~~~~~~~~~~~~~~~i~  252 (516)
T PLN02183        181 TRNITYRAAFGSSSNEGQ-----DEFIKILQEFSKLFGAFNVADFIPWL---GWIDPQGLNKRLVKARKSLDGFIDDIID  252 (516)
T ss_pred             HHHHHHhHhhcCcccchH-----HHHHHHHHHHHHHhCCccHHHhcchh---HhcccccHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999998764321     3455554443322111 011112222   1121212245566677788888888887


Q ss_pred             HHHhc---C------CCCCCcHHHHHHhcc-----------------CChHHHHHHHHHHHHhchhchHhHHHHHHHHHh
Q 040199          270 QRQQM---G------FSKKNDLLSRFMASI-----------------DDDKYLRDIVVSFLLAGRDTVASGLTSFFWLLS  323 (502)
Q Consensus       270 ~~~~~---~------~~~~~dll~~ll~~~-----------------~~~~~i~~~~~~~~~ag~~tt~~~l~~~l~~L~  323 (502)
                      ++.+.   +      .....|+++.+++..                 .+++++.+++.++++||+|||+++++|++++|+
T Consensus       253 ~~~~~~~~~~~~~~~~~~~~d~l~~ll~~~~~~~~~~~~~~~~~~~~l~~~~i~~~~~~~~~AG~dTTa~tl~~~l~~La  332 (516)
T PLN02183        253 DHIQKRKNQNADNDSEEAETDMVDDLLAFYSEEAKVNESDDLQNSIKLTRDNIKAIIMDVMFGGTETVASAIEWAMAELM  332 (516)
T ss_pred             HHHHhhcccccccccccccccHHHHHHHhhhccccccccccccccCCCCHHHHHHHHHHHHHcchhhHHHHHHHHHHHHH
Confidence            66431   1      112458999998621                 267899999999999999999999999999999


Q ss_pred             cCcHHHHHHHHHHHhhcCCCCCCCCHHhhccChhHHHHHhhhcCCCCCCcCCccccccCcccCCCeeeCCCCEEEEcccc
Q 040199          324 QHPEVESAIRNESDKIMKPNQDLVSFEQLRELHYLNAAVYESMRLFPPVQFDSKFAQEDDILPDGTFVRKGTRVTYHPYA  403 (502)
Q Consensus       324 ~~p~~q~~lr~Ei~~~~~~~~~~~~~~~l~~lp~l~a~i~E~lRl~p~~~~~~r~~~~~~~~~~g~~ipkGt~v~~~~~~  403 (502)
                      +||++|+|+++||+++++.+. .++.+++.+||||+|||+||||++|++|...|++.+|.++ +||.|||||.|.++.++
T Consensus       333 ~~Pevq~kl~~Ei~~v~~~~~-~~~~~~l~~L~yl~avi~EtlRl~p~~p~~~r~~~~d~~l-~g~~IPkGt~V~~~~~~  410 (516)
T PLN02183        333 KSPEDLKRVQQELADVVGLNR-RVEESDLEKLTYLKCTLKETLRLHPPIPLLLHETAEDAEV-AGYFIPKRSRVMINAWA  410 (516)
T ss_pred             hCHHHHHHHHHHHHHHcCCCC-CCCHHHhccChHHHHHHHHHhccCCCccceeeeccCceeE-CCEEECCCCEEEEehhh
Confidence            999999999999999998543 5899999999999999999999999999988888877776 99999999999999999


Q ss_pred             cccCCcCcCCCCCCCCCCcccCCCCCC-CCCCCCCCCCCCCcccCccHHHHHHHHHHHHHHHhhcceEEecCCCCC--Cc
Q 040199          404 MGRMERIWGPDCLEFKPQRWLRNGRFV-PENPFKYPVFQAGHRVCLGKDIALVEMKSVALAVVRKFNIRVSDPNQA--PR  480 (502)
Q Consensus       404 ~~~d~~~~g~~p~~F~P~Rfl~~~~~~-~~~~~~~~~Fg~G~r~C~G~~~a~~~~~~~l~~ll~~f~~~~~~~~~~--~~  480 (502)
                      +||||++| +||++|+||||++++... ..+...++|||+|+|+|+|+++|++|+++++|+++++|++++.++...  ..
T Consensus       411 ~hrd~~~~-~dP~~F~PeRfl~~~~~~~~~~~~~~lpFG~G~R~CiG~~lA~~e~~l~la~ll~~f~~~~~~~~~~~~~~  489 (516)
T PLN02183        411 IGRDKNSW-EDPDTFKPSRFLKPGVPDFKGSHFEFIPFGSGRRSCPGMQLGLYALDLAVAHLLHCFTWELPDGMKPSELD  489 (516)
T ss_pred             hcCCcccc-CCccccCchhhCCCCCccccCCcceecCCCCCCCCCCChHHHHHHHHHHHHHHHheeEEEcCCCCCCCCCC
Confidence            99999999 999999999999654321 124567999999999999999999999999999999999998775321  21


Q ss_pred             ccc--ceeeeccCCeeEEEEEc
Q 040199          481 FAP--GLTATVRGGLPVMVQER  500 (502)
Q Consensus       481 ~~~--~~~~~~~~~~~v~~~~r  500 (502)
                      ...  +.+..+...+.+.+++|
T Consensus       490 ~~~~~~~~~~~~~~~~~~~~~r  511 (516)
T PLN02183        490 MNDVFGLTAPRATRLVAVPTYR  511 (516)
T ss_pred             hhhccccccccCCCcEEEeecC
Confidence            112  33333444667777776


No 18 
>PLN02966 cytochrome P450 83A1
Probab=100.00  E-value=9.9e-69  Score=525.84  Aligned_cols=455  Identities=16%  Similarity=0.224  Sum_probs=331.3

Q ss_pred             HHHHhcCCCCCCCCCCcccchhhhccccchhHHHHHHHHhCCCceEEEeeeC--eEEecChhhHHHHhccCCCCCCCCch
Q 040199           36 IFVLRLKPWCQCDACRSYLTFSWLKDFNNLCDWYTHLLAKSPTGTIHLHVLG--NTITSNPGNVEYILKTRFDNYPKGKP  113 (502)
Q Consensus        36 ~~~~~~~~~~~~P~~~p~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~vvv~~p~~~~~i~~~~~~~~~~~~~  113 (502)
                      .+..+..+.+|+|.++|++|+.+.....+.+..+.++.++||+ ++.++.++  +++++||+.+++++.++...|.+++.
T Consensus        22 ~~~~~~~~~ppgp~~~p~~G~l~~l~~~~~~~~~~~~~~~yG~-v~~~~~g~~~~vvi~~p~~i~~vl~~~~~~~~~~~~  100 (502)
T PLN02966         22 KPKTKRYKLPPGPSPLPVIGNLLQLQKLNPQRFFAGWAKKYGP-ILSYRIGSRTMVVISSAELAKELLKTQDVNFADRPP  100 (502)
T ss_pred             ccccCCCCCCcCCCCCCeeccHHhcCCCChhHHHHHHHHHhCC-eEEEecCCCcEEEECCHHHHHHHHHhCcccccCCCC
Confidence            3444445578999999999866555445788999999999986 77777666  79999999999999987667775543


Q ss_pred             hhHhhhhccCC-c-ccccCChhHHHHHhh-hccccchhhHHHHHHHHHHHHHHHhHHHHHHHhccCCCCceeHHHHHHHH
Q 040199          114 FSVILGDLLGR-G-IFNVDGDSWEFQRKM-ACFELGSFNIKMYALELVTAEIRSRLIPLLSSAANKDNNILDLQDVFRRF  190 (502)
Q Consensus       114 ~~~~~~~~~g~-~-i~~~~g~~w~~~R~~-~~~~~~~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~vdl~~~~~~~  190 (502)
                      +........+. + .+..+|+.|+.+|+. +.+.|+..++..+.  ..+++..+.+++.+.+....+ +++|+.+.+..+
T Consensus       101 ~~~~~~~~~~~~~~~~~~~g~~w~~~R~~~~~~~f~~~~l~~~~--~~i~~~~~~l~~~l~~~~~~~-~~vdl~~~~~~~  177 (502)
T PLN02966        101 HRGHEFISYGRRDMALNHYTPYYREIRKMGMNHLFSPTRVATFK--HVREEEARRMMDKINKAADKS-EVVDISELMLTF  177 (502)
T ss_pred             CccceeeccCcceeeeCCCCHHHHHHHHHHHHHhcCHHHHHHHH--HHHHHHHHHHHHHHHHhccCC-CceeHHHHHHHH
Confidence            32111001122 2 245679999999998 88899999998874  444555566777887654433 689999999999


Q ss_pred             HHHHhhhhhcCCCCcccccCCCcchHHHHHHHHHHHHHHh-hhCCCchhHHHHHhcccchHHHHHHHHHHHHHHHHHHHH
Q 040199          191 SFDSICKFSFGLDPECLMLNLPVSKFATAFDLASKLSAER-ALAPSPIVWKIKRLLNIGSEKQLKGAINLVNELAETMIH  269 (502)
Q Consensus       191 ~~~~i~~~~fG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~  269 (502)
                      ++++++.++||.+++..+  ....++.+++.......... .....|+...+..+.  +.........+...+++++.++
T Consensus       178 t~dvi~~~~fG~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~i~  253 (502)
T PLN02966        178 TNSVVCRQAFGKKYNEDG--EEMKRFIKILYGTQSVLGKIFFSDFFPYCGFLDDLS--GLTAYMKECFERQDTYIQEVVN  253 (502)
T ss_pred             HHHHHHHHHhCCccCccc--hHHHHHHHHHHHHHHHhCcccHHHhhchhhhhhhhc--cHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999886433  11233444333322211110 001112111111111  1112233455566667777776


Q ss_pred             HHHhcC--CCCCCcHHHHHHhcc--------CChHHHHHHHHHHHHhchhchHhHHHHHHHHHhcCcHHHHHHHHHHHhh
Q 040199          270 QRQQMG--FSKKNDLLSRFMASI--------DDDKYLRDIVVSFLLAGRDTVASGLTSFFWLLSQHPEVESAIRNESDKI  339 (502)
Q Consensus       270 ~~~~~~--~~~~~dll~~ll~~~--------~~~~~i~~~~~~~~~ag~~tt~~~l~~~l~~L~~~p~~q~~lr~Ei~~~  339 (502)
                      ++.+..  .....|+++.+++..        .+++++.+++.++++||+|||+++++|++++|++||++|+|+++||+++
T Consensus       254 ~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~l~~~~i~~~~~~l~~AG~eTta~~l~~~l~~L~~~P~~q~kl~~Ei~~v  333 (502)
T PLN02966        254 ETLDPKRVKPETESMIDLLMEIYKEQPFASEFTVDNVKAVILDIVVAGTDTAAAAVVWGMTYLMKYPQVLKKAQAEVREY  333 (502)
T ss_pred             HHHhccccccccccHHHHHHHHHhccCcCCCCCHHHHHHHHHHHHhccccchHHHHHHHHHHHHhCHHHHHHHHHHHHHH
Confidence            654321  123468998888532        2678999999999999999999999999999999999999999999999


Q ss_pred             cCCCC-CCCCHHhhccChhHHHHHhhhcCCCCCCcCC-ccccccCcccCCCeeeCCCCEEEEcccccccCCcCcCCCCCC
Q 040199          340 MKPNQ-DLVSFEQLRELHYLNAAVYESMRLFPPVQFD-SKFAQEDDILPDGTFVRKGTRVTYHPYAMGRMERIWGPDCLE  417 (502)
Q Consensus       340 ~~~~~-~~~~~~~l~~lp~l~a~i~E~lRl~p~~~~~-~r~~~~~~~~~~g~~ipkGt~v~~~~~~~~~d~~~~g~~p~~  417 (502)
                      +++++ ..++++++++||||+|||+|++|++|+++.. .|.+.+|.++ +||.|||||.|.++.+++||||++||+||++
T Consensus       334 ~~~~~~~~~~~~dl~~lpyl~avi~E~LRl~p~v~~~~~R~~~~d~~l-~g~~IP~Gt~V~~~~~~~~rdp~~~g~dP~~  412 (502)
T PLN02966        334 MKEKGSTFVTEDDVKNLPYFRALVKETLRIEPVIPLLIPRACIQDTKI-AGYDIPAGTTVNVNAWAVSRDEKEWGPNPDE  412 (502)
T ss_pred             hcccCCCcCCHhhccCCcHHHHHHHHHhccCCCcccccCcccCCCeeE-ccEEECCCCEEEEecccccCCcccccCChhh
Confidence            97532 3579999999999999999999999999985 5777666555 9999999999999999999999999999999


Q ss_pred             CCCCcccCCCCCCCCCCCCCCCCCCCcccCccHHHHHHHHHHHHHHHhhcceEEecCCCCCC--c--cccceeeeccCCe
Q 040199          418 FKPQRWLRNGRFVPENPFKYPVFQAGHRVCLGKDIALVEMKSVALAVVRKFNIRVSDPNQAP--R--FAPGLTATVRGGL  493 (502)
Q Consensus       418 F~P~Rfl~~~~~~~~~~~~~~~Fg~G~r~C~G~~~a~~~~~~~l~~ll~~f~~~~~~~~~~~--~--~~~~~~~~~~~~~  493 (502)
                      |+||||++++.....+...++|||+|+|+|+|+++|++|+++++|.+|++|+|++.++....  .  ...+++..++ + 
T Consensus       413 F~PeRwl~~~~~~~~~~~~~~pFg~G~R~C~G~~~A~~el~~~la~ll~~f~i~~~~~~~~~~~~~~~~~~~~~~~~-~-  490 (502)
T PLN02966        413 FRPERFLEKEVDFKGTDYEFIPFGSGRRMCPGMRLGAAMLEVPYANLLLNFNFKLPNGMKPDDINMDVMTGLAMHKS-Q-  490 (502)
T ss_pred             CChhhhcCCCCCcCCCcCCccCCCCCCCCCCCHHHHHHHHHHHHHHHHHhceeeCCCCCCcccCCcccccCeeeccC-C-
Confidence            99999996542222245679999999999999999999999999999999999998764221  1  1224444333 3 


Q ss_pred             eEEEEEcC
Q 040199          494 PVMVQERG  501 (502)
Q Consensus       494 ~v~~~~r~  501 (502)
                      ++++++|+
T Consensus       491 ~~~~~~~~  498 (502)
T PLN02966        491 HLKLVPEK  498 (502)
T ss_pred             CeEEEEEe
Confidence            55566654


No 19 
>PLN02738 carotene beta-ring hydroxylase
Probab=100.00  E-value=2.1e-68  Score=527.22  Aligned_cols=427  Identities=25%  Similarity=0.426  Sum_probs=331.7

Q ss_pred             cccchhHHHHHHHHhCCCceEEEeeeC--eEEecChhhHHHHhccCCCCCCCCchhhHhhhhccCCcccccCChhHHHHH
Q 040199           61 DFNNLCDWYTHLLAKSPTGTIHLHVLG--NTITSNPGNVEYILKTRFDNYPKGKPFSVILGDLLGRGIFNVDGDSWEFQR  138 (502)
Q Consensus        61 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--~vvv~~p~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~g~~w~~~R  138 (502)
                      ..++++..+.++.++||. +++++.++  +++++||+.+++|+.++...|+++... .......+.+++..+|+.|+.+|
T Consensus       149 ~~g~~~~~l~~lh~kYGp-I~ri~lGp~~~vvIsDpe~i~eIl~~~~~~f~k~~~~-~~~~~~~g~~l~~~dge~wr~rR  226 (633)
T PLN02738        149 RGEAFFIPLYELFLTYGG-IFRLTFGPKSFLIVSDPSIAKHILRDNSKAYSKGILA-EILEFVMGKGLIPADGEIWRVRR  226 (633)
T ss_pred             cCchHHHHHHHHHHHhCC-EEEEEeCCCCEEEECCHHHHHHHHhhCcccCCCcchH-HHHhhccCCceecCCcHHHHHHH
Confidence            455688899999999985 88888665  689999999999999776668765432 33333456788889999999999


Q ss_pred             hhhccccchhhHHHHHHHHHHHHHHHhHHHHHHHhccCCCCceeHHHHHHHHHHHHhhhhhcCCCCcccccCCCcchHHH
Q 040199          139 KMACFELGSFNIKMYALELVTAEIRSRLIPLLSSAANKDNNILDLQDVFRRFSFDSICKFSFGLDPECLMLNLPVSKFAT  218 (502)
Q Consensus       139 ~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~vdl~~~~~~~~~~~i~~~~fG~~~~~~~~~~~~~~~~~  218 (502)
                      +.+.+.|+..++..+. + ++.+..+.+++.+++...++ +++|+.+.+..+++|+|+.++||.+++..+..   .++.+
T Consensus       227 r~l~p~Fs~~~v~~l~-~-~i~~~v~~L~~~L~~~~~~g-~~vdl~~~~~~lt~DVI~~~~FG~~~~~~~~~---~~~~~  300 (633)
T PLN02738        227 RAIVPALHQKYVAAMI-S-LFGQASDRLCQKLDAAASDG-EDVEMESLFSRLTLDIIGKAVFNYDFDSLSND---TGIVE  300 (633)
T ss_pred             HhccHhhhHHHHHHHH-H-HHHHHHHHHHHHHHHHhcCC-CcEeHHHHHHHHHHHHHHHHHhCCCccccccc---hHHHH
Confidence            9999999998888874 4 44555577888887755444 68999999999999999999999998754432   23333


Q ss_pred             HHHHHHHHHHHhhhCCCchhHHHH--HhcccchHHHHHHHHHHHHHHHHHHHHHHHhc------------CCCCCCcHHH
Q 040199          219 AFDLASKLSAERALAPSPIVWKIK--RLLNIGSEKQLKGAINLVNELAETMIHQRQQM------------GFSKKNDLLS  284 (502)
Q Consensus       219 ~~~~~~~~~~~~~~~~~~~~~~l~--~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~------------~~~~~~dll~  284 (502)
                      .+...............+ .|.++  ..++ +..++..++.+.+.++..++++.+++.            ......|+++
T Consensus       301 ~~~~~~~~~~~~~~~~~~-~~~~p~~~~l~-~~~~~~~~~~~~l~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~dil~  378 (633)
T PLN02738        301 AVYTVLREAEDRSVSPIP-VWEIPIWKDIS-PRQRKVAEALKLINDTLDDLIAICKRMVEEEELQFHEEYMNERDPSILH  378 (633)
T ss_pred             HHHHHHHHHHHHhhcchh-hhhhhHHhhhc-hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchhcccccccchHHH
Confidence            333332221111111111 11111  1111 112334445555666666665543220            0123458999


Q ss_pred             HHHhccC--ChHHHHHHHHHHHHhchhchHhHHHHHHHHHhcCcHHHHHHHHHHHhhcCCCCCCCCHHhhccChhHHHHH
Q 040199          285 RFMASID--DDKYLRDIVVSFLLAGRDTVASGLTSFFWLLSQHPEVESAIRNESDKIMKPNQDLVSFEQLRELHYLNAAV  362 (502)
Q Consensus       285 ~ll~~~~--~~~~i~~~~~~~~~ag~~tt~~~l~~~l~~L~~~p~~q~~lr~Ei~~~~~~~~~~~~~~~l~~lp~l~a~i  362 (502)
                      .+++...  +++++.++++.+++||+|||+.+++|++++|++||++|+|||+||++++++  ..++++++++||||+|||
T Consensus       379 ~Ll~~~~~ls~~~L~~e~~~ll~AG~eTTA~tLt~~l~~L~~~Pevq~kLreEl~~v~~~--~~~t~edL~kLPYL~AVI  456 (633)
T PLN02738        379 FLLASGDDVSSKQLRDDLMTMLIAGHETSAAVLTWTFYLLSKEPSVVAKLQEEVDSVLGD--RFPTIEDMKKLKYTTRVI  456 (633)
T ss_pred             HHHHcCCCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhCHHHHHHHHHHHHHhcCC--CCCCHHHHccCHHHHHHH
Confidence            9997653  789999999999999999999999999999999999999999999999984  358999999999999999


Q ss_pred             hhhcCCCCCCcCCccccccCcccCCCeeeCCCCEEEEcccccccCCcCcCCCCCCCCCCcccCCCC--CCCCCCCCCCCC
Q 040199          363 YESMRLFPPVQFDSKFAQEDDILPDGTFVRKGTRVTYHPYAMGRMERIWGPDCLEFKPQRWLRNGR--FVPENPFKYPVF  440 (502)
Q Consensus       363 ~E~lRl~p~~~~~~r~~~~~~~~~~g~~ipkGt~v~~~~~~~~~d~~~~g~~p~~F~P~Rfl~~~~--~~~~~~~~~~~F  440 (502)
                      +|+||++|+++.+.|++.+|.++ +||.|||||.|.++.+.+||||++| +||++|+||||+.++.  ........++||
T Consensus       457 kEtLRL~p~~p~~~R~a~~d~~i-~gy~IPkGT~V~~s~~~ihrdp~if-pdP~~F~PERWl~~~~~~~~~~~~~~~vpF  534 (633)
T PLN02738        457 NESLRLYPQPPVLIRRSLENDML-GGYPIKRGEDIFISVWNLHRSPKHW-DDAEKFNPERWPLDGPNPNETNQNFSYLPF  534 (633)
T ss_pred             HHHHhcCCCccccceeeccCceE-CCEEECCCCEEEecHHHHhCCcccc-CCccccCcccCCCCCCCccccCCCCceeCC
Confidence            99999999999988999888775 9999999999999999999999999 9999999999985421  122345679999


Q ss_pred             CCCcccCccHHHHHHHHHHHHHHHhhcceEEecCCCCCCccccceeeeccCCeeEEEEEcC
Q 040199          441 QAGHRVCLGKDIALVEMKSVALAVVRKFNIRVSDPNQAPRFAPGLTATVRGGLPVMVQERG  501 (502)
Q Consensus       441 g~G~r~C~G~~~a~~~~~~~l~~ll~~f~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~r~  501 (502)
                      |.|+|.|+|++||++|+++++|.|+++|+|++..+.++.....+.+..++++++|++++|.
T Consensus       535 G~G~R~CiG~~lA~~El~l~LA~Llr~F~~el~~~~~~~~~~~~~~~~p~~~l~v~l~~R~  595 (633)
T PLN02738        535 GGGPRKCVGDMFASFENVVATAMLVRRFDFQLAPGAPPVKMTTGATIHTTEGLKMTVTRRT  595 (633)
T ss_pred             CCCCCCCcCHHHHHHHHHHHHHHHHHhCeeEeCCCCCCcccccceEEeeCCCcEEEEEECC
Confidence            9999999999999999999999999999999987654344445678889999999999996


No 20 
>PLN03112 cytochrome P450 family protein; Provisional
Probab=100.00  E-value=4.9e-68  Score=523.45  Aligned_cols=448  Identities=19%  Similarity=0.204  Sum_probs=338.5

Q ss_pred             CCCCCCCCcccchhhhccccchhHHHHHHHHhCCCceEEEeeeC--eEEecChhhHHHHhccCCCCCCCCchhhHhhhhc
Q 040199           44 WCQCDACRSYLTFSWLKDFNNLCDWYTHLLAKSPTGTIHLHVLG--NTITSNPGNVEYILKTRFDNYPKGKPFSVILGDL  121 (502)
Q Consensus        44 ~~~~P~~~p~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~vvv~~p~~~~~i~~~~~~~~~~~~~~~~~~~~~  121 (502)
                      .+|+|.++|++|+.+. ...+.+..+.++.++||. +++++.++  +++++||+.+++++.++...|++++.........
T Consensus        33 ~ppgp~~~pl~G~~~~-~~~~~~~~~~~~~~kyG~-v~~~~~g~~~~v~v~dpe~~~~vl~~~~~~f~~~~~~~~~~~~~  110 (514)
T PLN03112         33 LPPGPPRWPIVGNLLQ-LGPLPHRDLASLCKKYGP-LVYLRLGSVDAITTDDPELIREILLRQDDVFASRPRTLAAVHLA  110 (514)
T ss_pred             CccCCCCCCeeeeHHh-cCCchHHHHHHHHHHhCC-eEEEEecCccEEEECCHHHHHHHHHhCCcccccCCCcccceeec
Confidence            7788999999986543 345678899999999985 77777665  8999999999999987767787655432222223


Q ss_pred             cCC--cccccCChhHHHHHhhh-ccccchhhHHHHHHHHHHHHHHHhHHHHHHHhccCCCCceeHHHHHHHHHHHHhhhh
Q 040199          122 LGR--GIFNVDGDSWEFQRKMA-CFELGSFNIKMYALELVTAEIRSRLIPLLSSAANKDNNILDLQDVFRRFSFDSICKF  198 (502)
Q Consensus       122 ~g~--~i~~~~g~~w~~~R~~~-~~~~~~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~vdl~~~~~~~~~~~i~~~  198 (502)
                      +|.  +++..+|+.|+.+|+.+ .+.|+..+++.+. +.+.+++ +.+++.+.+....+ +++|+.+.+..+++++++.+
T Consensus       111 ~g~~~~~~~~~g~~wk~~Rr~~~~~~f~~~~l~~~~-~~~~~~~-~~lv~~l~~~~~~~-~~vd~~~~~~~~~~~vi~~~  187 (514)
T PLN03112        111 YGCGDVALAPLGPHWKRMRRICMEHLLTTKRLESFA-KHRAEEA-RHLIQDVWEAAQTG-KPVNLREVLGAFSMNNVTRM  187 (514)
T ss_pred             cCCCceEeCCCCHHHHHHHHHHHHHhcCHHHHHHhh-HHHHHHH-HHHHHHHHHhhccC-CeeeHHHHHHHHHHHHHHHH
Confidence            333  35677899999999985 5689999998886 6665555 44555554433333 68999999999999999999


Q ss_pred             hcCCCCcccccC--CCcchHHHHHHHHHHHHHHhhhCCCchhHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHhcC-
Q 040199          199 SFGLDPECLMLN--LPVSKFATAFDLASKLSAERALAPSPIVWKIKRLLNIGSEKQLKGAINLVNELAETMIHQRQQMG-  275 (502)
Q Consensus       199 ~fG~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-  275 (502)
                      +||.++......  ....++.+++..+......  .....+++.+..+.+.+..++..++.+.+.+++.+.|+++++.. 
T Consensus       188 ~fG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~  265 (514)
T PLN03112        188 LLGKQYFGAESAGPKEAMEFMHITHELFRLLGV--IYLGDYLPAWRWLDPYGCEKKMREVEKRVDEFHDKIIDEHRRARS  265 (514)
T ss_pred             HcCCccccccccchHHHHHHHHHHHHHHHHcCC--CcHHHhChHHHhcCcccHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence            999987432211  1123344444433322110  00001112222222222345566778888888888888776521 


Q ss_pred             ----CCCCCcHHHHHHhcc-------CChHHHHHHHHHHHHhchhchHhHHHHHHHHHhcCcHHHHHHHHHHHhhcCCCC
Q 040199          276 ----FSKKNDLLSRFMASI-------DDDKYLRDIVVSFLLAGRDTVASGLTSFFWLLSQHPEVESAIRNESDKIMKPNQ  344 (502)
Q Consensus       276 ----~~~~~dll~~ll~~~-------~~~~~i~~~~~~~~~ag~~tt~~~l~~~l~~L~~~p~~q~~lr~Ei~~~~~~~~  344 (502)
                          .....|+++.++++.       .+++++.+++.++++||+|||+++++|++++|++||++|+|+|+||++++++++
T Consensus       266 ~~~~~~~~~d~l~~ll~~~~~~~~~~l~~~~i~~~~~~~~~AG~dTTa~~l~~~l~~L~~~P~vq~kl~~Ei~~~~~~~~  345 (514)
T PLN03112        266 GKLPGGKDMDFVDVLLSLPGENGKEHMDDVEIKALMQDMIAAATDTSAVTNEWAMAEVIKNPRVLRKIQEELDSVVGRNR  345 (514)
T ss_pred             ccccCCccchHHHHHHHhhccccccCCCHHHHHHHHHHHhccccccHHHHHHHHHHHHHhChHHHHHHHHHHHHhcCCCC
Confidence                123468999999742       267899999999999999999999999999999999999999999999998654


Q ss_pred             CCCCHHhhccChhHHHHHhhhcCCCCCCcCC-ccccccCcccCCCeeeCCCCEEEEcccccccCCcCcCCCCCCCCCCcc
Q 040199          345 DLVSFEQLRELHYLNAAVYESMRLFPPVQFD-SKFAQEDDILPDGTFVRKGTRVTYHPYAMGRMERIWGPDCLEFKPQRW  423 (502)
Q Consensus       345 ~~~~~~~l~~lp~l~a~i~E~lRl~p~~~~~-~r~~~~~~~~~~g~~ipkGt~v~~~~~~~~~d~~~~g~~p~~F~P~Rf  423 (502)
                       .++.+++++||||+|||+||+|++|+++.. .|.+.+|.++ +||.|||||.|.++.+++||||++| +||++|+||||
T Consensus       346 -~~t~~~l~~L~yl~avi~EtlRl~p~~~~~~~R~~~~d~~i-~g~~IPkGt~v~~~~~~~h~d~~~~-~dP~~F~PeRf  422 (514)
T PLN03112        346 -MVQESDLVHLNYLRCVVRETFRMHPAGPFLIPHESLRATTI-NGYYIPAKTRVFINTHGLGRNTKIW-DDVEEFRPERH  422 (514)
T ss_pred             -cCChhhhccCcHHHHHHHHHhccCCCcccccccccCCCeeE-cCEEeCCCCEEEEehHHhhCCcccC-CChhhcCCccc
Confidence             589999999999999999999999999975 5888777666 9999999999999999999999999 99999999998


Q ss_pred             cCCCCC--C--CCCCCCCCCCCCCcccCccHHHHHHHHHHHHHHHhhcceEEecCCCC--CCccc--cceeeeccCCeeE
Q 040199          424 LRNGRF--V--PENPFKYPVFQAGHRVCLGKDIALVEMKSVALAVVRKFNIRVSDPNQ--APRFA--PGLTATVRGGLPV  495 (502)
Q Consensus       424 l~~~~~--~--~~~~~~~~~Fg~G~r~C~G~~~a~~~~~~~l~~ll~~f~~~~~~~~~--~~~~~--~~~~~~~~~~~~v  495 (502)
                      ..+...  .  ......++|||+|+|.|||+++|++|++++++++|++||+++.++..  .....  -+++..+.+++.|
T Consensus       423 ~~~~~~~~~~~~~~~~~~~pFg~G~R~C~G~~~A~~e~~~~la~ll~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  502 (514)
T PLN03112        423 WPAEGSRVEISHGPDFKILPFSAGKRKCPGAPLGVTMVLMALARLFHCFDWSPPDGLRPEDIDTQEVYGMTMPKAKPLRA  502 (514)
T ss_pred             CCCCCCccccccCCCcceeCCCCCCCCCCcHHHHHHHHHHHHHHHHHheeeecCCCCCcccCCCccccCcccccCCCeEE
Confidence            653211  1  12345799999999999999999999999999999999999875421  12221  2456667889999


Q ss_pred             EEEEcC
Q 040199          496 MVQERG  501 (502)
Q Consensus       496 ~~~~r~  501 (502)
                      .+.+|.
T Consensus       503 ~~~~r~  508 (514)
T PLN03112        503 VATPRL  508 (514)
T ss_pred             EeecCC
Confidence            999995


No 21 
>PLN02774 brassinosteroid-6-oxidase
Probab=100.00  E-value=4.3e-68  Score=515.95  Aligned_cols=425  Identities=19%  Similarity=0.244  Sum_probs=327.0

Q ss_pred             hcCCCCCCCCCCcccchhhhccccchhHHHHHHHHhCCCceEEEeeeC--eEEecChhhHHHHhccCCCCCCCCchhhHh
Q 040199           40 RLKPWCQCDACRSYLTFSWLKDFNNLCDWYTHLLAKSPTGTIHLHVLG--NTITSNPGNVEYILKTRFDNYPKGKPFSVI  117 (502)
Q Consensus        40 ~~~~~~~~P~~~p~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~vvv~~p~~~~~i~~~~~~~~~~~~~~~~~  117 (502)
                      ++++.||+|+++|++|+.+. ...+.+.++.++.++||. +++++.++  +++++||+.+++++.++...|.++.. ...
T Consensus        28 ~r~~~ppgp~~~P~~G~~~~-~~~~~~~~~~~~~~~yG~-i~~~~~g~~~~v~i~~p~~~~~il~~~~~~~~~~~~-~~~  104 (463)
T PLN02774         28 SKKGLPPGTMGWPLFGETTE-FLKQGPDFMKNQRLRYGS-FFKSHILGCPTIVSMDPELNRYILMNEGKGLVPGYP-QSM  104 (463)
T ss_pred             CCCCCCCCCCCCCchhhHHH-HHHhhHHHHHHHHHHhcc-CccceecCCCeEEEeCHHHHHHHHcCCCCeEEecCC-HHH
Confidence            34447788888999986543 345667788999999985 78888766  89999999999999877666644432 222


Q ss_pred             hhhccCC-cccccCChhHHHHHhhhccccchhhHHHHHHHHHHHHHHHhHHHHHHHhccCCCCceeHHHHHHHHHHHHhh
Q 040199          118 LGDLLGR-GIFNVDGDSWEFQRKMACFELGSFNIKMYALELVTAEIRSRLIPLLSSAANKDNNILDLQDVFRRFSFDSIC  196 (502)
Q Consensus       118 ~~~~~g~-~i~~~~g~~w~~~R~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~vdl~~~~~~~~~~~i~  196 (502)
                      . ..+|. +++..+|+.|+.+|+++.+.|++..++.+..+.+. +..+.+.+.+   .. + +++|+.+.+..+++++++
T Consensus       105 ~-~~lg~~~~~~~~g~~w~~~R~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~---~~-~-~~v~~~~~~~~~~~~~~~  177 (463)
T PLN02774        105 L-DILGTCNIAAVHGSTHRYMRGSLLSLISPTMIRDHLLPKID-EFMRSHLSGW---DG-L-KTIDIQEKTKEMALLSAL  177 (463)
T ss_pred             H-HHhCccchhhcCCHHHHHHHHHHHHhcCHHHHHHHHHHHHH-HHHHHHHHhh---CC-C-CCEEeeHHHHHHHHHHHH
Confidence            2 34443 68888999999999999999998888763214433 3333343333   22 2 479999999999999999


Q ss_pred             hhhcCCCCcccccCCCcchHHHHHHHHHHHHHHhhhCCCchhHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 040199          197 KFSFGLDPECLMLNLPVSKFATAFDLASKLSAERALAPSPIVWKIKRLLNIGSEKQLKGAINLVNELAETMIHQRQQMGF  276 (502)
Q Consensus       197 ~~~fG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~  276 (502)
                      .++||.+.+...     .++.+.+......     ....+      ..++....++..++.+.+.+++.+.|+++++.. 
T Consensus       178 ~~~~g~~~~~~~-----~~~~~~~~~~~~~-----~~~~~------~~lp~~~~~~~~~~~~~~~~~~~~~i~~r~~~~-  240 (463)
T PLN02774        178 KQIAGTLSKPIS-----EEFKTEFFKLVLG-----TLSLP------IDLPGTNYRSGVQARKNIVRMLRQLIQERRASG-  240 (463)
T ss_pred             HHHcCCCChHHH-----HHHHHHHHHHhcc-----cccCC------cCCCChhhhHHHHHHHHHHHHHHHHHHHHHhcC-
Confidence            999997643211     2222222221110     00011      112222235566788889999999998887653 


Q ss_pred             CCCCcHHHHHHhcc-----CChHHHHHHHHHHHHhchhchHhHHHHHHHHHhcCcHHHHHHHHHHHhhcCCC--CCCCCH
Q 040199          277 SKKNDLLSRFMASI-----DDDKYLRDIVVSFLLAGRDTVASGLTSFFWLLSQHPEVESAIRNESDKIMKPN--QDLVSF  349 (502)
Q Consensus       277 ~~~~dll~~ll~~~-----~~~~~i~~~~~~~~~ag~~tt~~~l~~~l~~L~~~p~~q~~lr~Ei~~~~~~~--~~~~~~  349 (502)
                      ...+|+++.+++..     .+++++.+++.++++||+|||+++++|++++|++||++|+|+++||+++++..  ...+++
T Consensus       241 ~~~~d~l~~ll~~~~~~~~~s~~ei~~~~~~ll~Ag~dTt~~~l~w~l~~L~~~P~~q~kl~~Ei~~~~~~~~~~~~~~~  320 (463)
T PLN02774        241 ETHTDMLGYLMRKEGNRYKLTDEEIIDQIITILYSGYETVSTTSMMAVKYLHDHPKALQELRKEHLAIRERKRPEDPIDW  320 (463)
T ss_pred             CCcccHHHHHHhCccCCCCCCHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHhccCCCCCCCH
Confidence            34579999998743     27889999999999999999999999999999999999999999999998642  345899


Q ss_pred             HhhccChhHHHHHhhhcCCCCCCcCCccccccCcccCCCeeeCCCCEEEEcccccccCCcCcCCCCCCCCCCcccCCCCC
Q 040199          350 EQLRELHYLNAAVYESMRLFPPVQFDSKFAQEDDILPDGTFVRKGTRVTYHPYAMGRMERIWGPDCLEFKPQRWLRNGRF  429 (502)
Q Consensus       350 ~~l~~lp~l~a~i~E~lRl~p~~~~~~r~~~~~~~~~~g~~ipkGt~v~~~~~~~~~d~~~~g~~p~~F~P~Rfl~~~~~  429 (502)
                      +++.+||||+|||+|++|++|+++.+.|.+++|.++ +||.|||||.|+++.+++||||++| +||++|+||||++++..
T Consensus       321 ~~l~~lpyl~a~ikE~lRl~P~v~~~~R~~~~d~~l-~g~~IpkGt~v~~~~~~~~rdp~~~-~dP~~F~PeRfl~~~~~  398 (463)
T PLN02774        321 NDYKSMRFTRAVIFETSRLATIVNGVLRKTTQDMEL-NGYVIPKGWRIYVYTREINYDPFLY-PDPMTFNPWRWLDKSLE  398 (463)
T ss_pred             HHHhcCcHHHHHHHHHHhcCCCCCCcccccCCCeeE-CCEEECCCCEEEEehHHhcCCcccC-CChhccCchhcCCCCcC
Confidence            999999999999999999999999888888888777 9999999999999999999999999 99999999999965421


Q ss_pred             CCCCCCCCCCCCCCcccCccHHHHHHHHHHHHHHHhhcceEEecCCCCCCccccceeeeccCCeeEEEEE
Q 040199          430 VPENPFKYPVFQAGHRVCLGKDIALVEMKSVALAVVRKFNIRVSDPNQAPRFAPGLTATVRGGLPVMVQE  499 (502)
Q Consensus       430 ~~~~~~~~~~Fg~G~r~C~G~~~a~~~~~~~l~~ll~~f~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~  499 (502)
                         ....++|||+|+|+|||+++|++|++++++.|+++|++++.++++ +...  .+..|++|++|++++
T Consensus       399 ---~~~~~lpFG~G~r~C~G~~~A~~e~~~~la~Ll~~f~~~~~~~~~-~~~~--~~~~p~~g~~~~~~~  462 (463)
T PLN02774        399 ---SHNYFFLFGGGTRLCPGKELGIVEISTFLHYFVTRYRWEEVGGDK-LMKF--PRVEAPNGLHIRVSP  462 (463)
T ss_pred             ---CCccccCcCCCCCcCCcHHHHHHHHHHHHHHHHHhceEEECCCCc-cccC--CCCCCCCCceEEeee
Confidence               123589999999999999999999999999999999999977543 2222  234588999999985


No 22 
>PLN02655 ent-kaurene oxidase
Probab=100.00  E-value=3e-67  Score=510.45  Aligned_cols=445  Identities=17%  Similarity=0.192  Sum_probs=333.7

Q ss_pred             CCCCCCCcccchhhhccccchhHHHHHHHHhCCCceEEEeeeC--eEEecChhhHHHHhccCCCCCCCCchhhHhhhhcc
Q 040199           45 CQCDACRSYLTFSWLKDFNNLCDWYTHLLAKSPTGTIHLHVLG--NTITSNPGNVEYILKTRFDNYPKGKPFSVILGDLL  122 (502)
Q Consensus        45 ~~~P~~~p~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~vvv~~p~~~~~i~~~~~~~~~~~~~~~~~~~~~~  122 (502)
                      ||||+++|++|+.+.....+++..+.++.++||+ +++++.++  +++|+||+.+++++.++...|++++.. .....+.
T Consensus         1 ppgp~~lP~iG~l~~~~~~~~~~~~~~~~~~yG~-i~~~~~g~~~~vvv~~pe~~k~il~~~~~~f~~r~~~-~~~~~~~   78 (466)
T PLN02655          1 VPAVPGLPVIGNLLQLKEKKPHRTFTKWSEIYGP-IYTIRTGASSVVVLNSTEVAKEAMVTKFSSISTRKLS-KALTVLT   78 (466)
T ss_pred             CcCCCCCCccccHHHcCCCchhHHHHHHHHHhCC-eEEEEECCEeEEEeCCHHHHHHHHHhcCchhcCCChh-hHHHHHh
Confidence            5789999999866554445689999999999986 88888776  899999999999999877778765433 2223233


Q ss_pred             CC--ccccc-CChhHHHHHhhhc-cccchhhHHHHHHHHHHHHHHHhHHHHHHHhcc-CCCCceeHHHHHHHHHHHHhhh
Q 040199          123 GR--GIFNV-DGDSWEFQRKMAC-FELGSFNIKMYALELVTAEIRSRLIPLLSSAAN-KDNNILDLQDVFRRFSFDSICK  197 (502)
Q Consensus       123 g~--~i~~~-~g~~w~~~R~~~~-~~~~~~~l~~~~~~~~~~~~~~~l~~~l~~~~~-~~~~~vdl~~~~~~~~~~~i~~  197 (502)
                      +.  +++.. +|+.|+++|+.+. +.++...+..+  ..+.++..+.+.+.+.+... ..++++|+.+.+..+++++++.
T Consensus        79 ~~~~~~~~~~~g~~wr~~Rr~~~~~~~s~~~~~~~--~~~~~~~~~~~~~~l~~~~~~~~~~~vd~~~~~~~~t~dvi~~  156 (466)
T PLN02655         79 RDKSMVATSDYGDFHKMVKRYVMNNLLGANAQKRF--RDTRDMLIENMLSGLHALVKDDPHSPVNFRDVFENELFGLSLI  156 (466)
T ss_pred             cCCCceeeCCCcHHHHHHHHHHHHHhcCchHHHHh--HHHHHHHHHHHHHHHHhhccccCCCceeHHHHHHHHHHHHHHH
Confidence            32  34444 4899999998665 45666566555  33445555556666655432 2236899999999999999999


Q ss_pred             hhcCCCCcccccCCCcc------hHHHHHHHHHHHHHHh-hhCCCchhHHHHHhcccc-hHHHHHHHHHHHHHHHHHHHH
Q 040199          198 FSFGLDPECLMLNLPVS------KFATAFDLASKLSAER-ALAPSPIVWKIKRLLNIG-SEKQLKGAINLVNELAETMIH  269 (502)
Q Consensus       198 ~~fG~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~i~  269 (502)
                      ++||.+.+..+......      .+...+..+....... ....+|++.    +++.. ..+...+....+.++++.+++
T Consensus       157 ~~fG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~l~----~~~~~~~~~~~~~~~~~~~~~~~~~i~  232 (466)
T PLN02655        157 QALGEDVESVYVEELGTEISKEEIFDVLVHDMMMCAIEVDWRDFFPYLS----WIPNKSFETRVQTTEFRRTAVMKALIK  232 (466)
T ss_pred             HHhccccccccccccccchhhHHHHHHHHHHHHHHhCCcchhhhhhhhh----hcCchhHHHHHHHHHHHHHHHHHHHHH
Confidence            99999876543221111      1122222221111100 011222221    22211 122333334455678888887


Q ss_pred             HHHhc--CCCCCCcHHHHHHhccC--ChHHHHHHHHHHHHhchhchHhHHHHHHHHHhcCcHHHHHHHHHHHhhcCCCCC
Q 040199          270 QRQQM--GFSKKNDLLSRFMASID--DDKYLRDIVVSFLLAGRDTVASGLTSFFWLLSQHPEVESAIRNESDKIMKPNQD  345 (502)
Q Consensus       270 ~~~~~--~~~~~~dll~~ll~~~~--~~~~i~~~~~~~~~ag~~tt~~~l~~~l~~L~~~p~~q~~lr~Ei~~~~~~~~~  345 (502)
                      ++++.  ......|+++.+++...  +++++.+++.++++||+|||+++++|++++|++||++|+|+|+||+++++.+. 
T Consensus       233 ~~~~~~~~~~~~~d~l~~ll~~~~~ls~~~i~~~~~~~~~ag~dtta~~l~~~~~~l~~~p~~~~~l~~Ei~~~~~~~~-  311 (466)
T PLN02655        233 QQKKRIARGEERDCYLDFLLSEATHLTDEQLMMLVWEPIIEAADTTLVTTEWAMYELAKNPDKQERLYREIREVCGDER-  311 (466)
T ss_pred             HHHHhhcCCCCcccHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHhCCCC-
Confidence            76653  22335689999998765  89999999999999999999999999999999999999999999999998643 


Q ss_pred             CCCHHhhccChhHHHHHhhhcCCCCCCcCCc-cccccCcccCCCeeeCCCCEEEEcccccccCCcCcCCCCCCCCCCccc
Q 040199          346 LVSFEQLRELHYLNAAVYESMRLFPPVQFDS-KFAQEDDILPDGTFVRKGTRVTYHPYAMGRMERIWGPDCLEFKPQRWL  424 (502)
Q Consensus       346 ~~~~~~l~~lp~l~a~i~E~lRl~p~~~~~~-r~~~~~~~~~~g~~ipkGt~v~~~~~~~~~d~~~~g~~p~~F~P~Rfl  424 (502)
                       +++++++++|||+||++||||++|+++... |.+.+|.++ +||.|||||.|+++.+++||||++| +||++|+||||+
T Consensus       312 -~~~~~l~~l~yl~a~i~EtlRl~p~~~~~~~r~~~~d~~~-~g~~ip~gt~v~~~~~~~~~d~~~~-~~p~~F~PeR~~  388 (466)
T PLN02655        312 -VTEEDLPNLPYLNAVFHETLRKYSPVPLLPPRFVHEDTTL-GGYDIPAGTQIAINIYGCNMDKKRW-ENPEEWDPERFL  388 (466)
T ss_pred             -CCHHHHhcChHHHHHHHHHhccCCCcCCCCCcccCCCccc-CCEEECCCCEEEecHHHhcCCcccC-CChhccCccccC
Confidence             899999999999999999999999999874 888877666 9999999999999999999999999 999999999999


Q ss_pred             CCCCCCCCCCCCCCCCCCCcccCccHHHHHHHHHHHHHHHhhcceEEecCCCCCCccccceeeeccCCeeEEEEEcCC
Q 040199          425 RNGRFVPENPFKYPVFQAGHRVCLGKDIALVEMKSVALAVVRKFNIRVSDPNQAPRFAPGLTATVRGGLPVMVQERGD  502 (502)
Q Consensus       425 ~~~~~~~~~~~~~~~Fg~G~r~C~G~~~a~~~~~~~l~~ll~~f~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~r~~  502 (502)
                      +++.. ......++|||+|+|.|||+++|+.|+++++++||++|++++.++........+++..+++++.|.+++|.+
T Consensus       389 ~~~~~-~~~~~~~~~Fg~G~r~C~G~~~A~~~~~~~l~~ll~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~  465 (466)
T PLN02655        389 GEKYE-SADMYKTMAFGAGKRVCAGSLQAMLIACMAIARLVQEFEWRLREGDEEKEDTVQLTTQKLHPLHAHLKPRGS  465 (466)
T ss_pred             CCCcc-cCCcccccCCCCCCCCCCcHHHHHHHHHHHHHHHHHHeEEEeCCCCccccchhheeEeecCCcEEEEeecCC
Confidence            65321 123467999999999999999999999999999999999999766433333446778899999999999974


No 23 
>PLN02936 epsilon-ring hydroxylase
Probab=100.00  E-value=3.2e-67  Score=512.37  Aligned_cols=445  Identities=22%  Similarity=0.330  Sum_probs=348.8

Q ss_pred             CCCCCCCCcccchhhhc----cccchhHHHHHHHHhCCCceEEEeeeC--eEEecChhhHHHHhccCCCCCCCCchhhHh
Q 040199           44 WCQCDACRSYLTFSWLK----DFNNLCDWYTHLLAKSPTGTIHLHVLG--NTITSNPGNVEYILKTRFDNYPKGKPFSVI  117 (502)
Q Consensus        44 ~~~~P~~~p~ig~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~--~vvv~~p~~~~~i~~~~~~~~~~~~~~~~~  117 (502)
                      +-++-.++|++|..+..    ....++..+.++.++||. +++++.++  .++++||+++++++.+.+..|.++..+ ..
T Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yG~-i~~~~~g~~~~vvv~~pe~~~~il~~~~~~f~~~~~~-~~   90 (489)
T PLN02936         13 LWGDDSGIPVADAKLEDVTDLLGGALFLPLFKWMNEYGP-VYRLAAGPRNFVVVSDPAIAKHVLRNYGSKYAKGLVA-EV   90 (489)
T ss_pred             cCCCCCCCccHHhHHhhHHHHhccHHHHHHHHHHHHcCC-EEEEccCCccEEEEcCHHHHHHHHHhccccccCcchh-hh
Confidence            45677889999854443    345788899999999985 88888776  899999999999998765778765433 33


Q ss_pred             hhhccCCcccccCChhHHHHHhhhccccchhhHHHHHHHHHHHHHHHhHHHHHHHhccCCCCceeHHHHHHHHHHHHhhh
Q 040199          118 LGDLLGRGIFNVDGDSWEFQRKMACFELGSFNIKMYALELVTAEIRSRLIPLLSSAANKDNNILDLQDVFRRFSFDSICK  197 (502)
Q Consensus       118 ~~~~~g~~i~~~~g~~w~~~R~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~vdl~~~~~~~~~~~i~~  197 (502)
                      .....+.+++..+|+.|+++|+++++.|+..++..+. +.+.++..+.+.+.+.+...++ +++|+.+.+..+++++++.
T Consensus        91 ~~~~~~~~i~~~~g~~wk~~Rk~l~~~f~~~~l~~~~-~~~~~~~~~~l~~~l~~~~~~g-~~vd~~~~~~~~~~dvi~~  168 (489)
T PLN02936         91 SEFLFGSGFAIAEGELWTARRRAVVPSLHRRYLSVMV-DRVFCKCAERLVEKLEPVALSG-EAVNMEAKFSQLTLDVIGL  168 (489)
T ss_pred             hHHHhcCccccCCchHHHHHHHhhcCccCHHHHHHHH-HHHHHHHHHHHHHHHHHHhcCC-CceeHHHHHHHHHHHHHHH
Confidence            3334577888899999999999999999988887765 5455556677888887765444 6899999999999999999


Q ss_pred             hhcCCCCcccccCCCcchHHHHHHHHHHHHHHhhhCCCchhH--HHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHhc-
Q 040199          198 FSFGLDPECLMLNLPVSKFATAFDLASKLSAERALAPSPIVW--KIKRLLNIGSEKQLKGAINLVNELAETMIHQRQQM-  274 (502)
Q Consensus       198 ~~fG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-  274 (502)
                      ++||.+++..+..   .++.+.+...............|...  .+..+.  +...+..++.+.+.+++.+.|+++++. 
T Consensus       169 ~~fG~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~p~~~~~~l~~~~--p~~~~~~~~~~~i~~~~~~~i~~~~~~~  243 (489)
T PLN02936        169 SVFNYNFDSLTTD---SPVIQAVYTALKEAETRSTDLLPYWKVDFLCKIS--PRQIKAEKAVTVIRETVEDLVDKCKEIV  243 (489)
T ss_pred             HHcCCCccccccC---cHHHHHHHHHHHHHHHhhhccchHHhhHHHhccC--hhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999998764432   23444443332221111122222211  111112  223456677788888888888766531 


Q ss_pred             ---C---------CCCCCcHHHHHHhcc--CChHHHHHHHHHHHHhchhchHhHHHHHHHHHhcCcHHHHHHHHHHHhhc
Q 040199          275 ---G---------FSKKNDLLSRFMASI--DDDKYLRDIVVSFLLAGRDTVASGLTSFFWLLSQHPEVESAIRNESDKIM  340 (502)
Q Consensus       275 ---~---------~~~~~dll~~ll~~~--~~~~~i~~~~~~~~~ag~~tt~~~l~~~l~~L~~~p~~q~~lr~Ei~~~~  340 (502)
                         .         .....|+++.+++..  .+++++.++++++++||+|||+++++|++++|++||++|+|+|+||++++
T Consensus       244 ~~~~~~~~~~~~~~~~~~d~l~~ll~~~~~~~~~~i~~~~~~~~~aG~dTta~~l~~~l~~L~~~p~~~~kl~~Ei~~~~  323 (489)
T PLN02936        244 EAEGEVIEGEEYVNDSDPSVLRFLLASREEVSSVQLRDDLLSMLVAGHETTGSVLTWTLYLLSKNPEALRKAQEELDRVL  323 (489)
T ss_pred             hhcccccccccccccCchHHHHHHHhccccCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHh
Confidence               0         012467999999764  37899999999999999999999999999999999999999999999998


Q ss_pred             CCCCCCCCHHhhccChhHHHHHhhhcCCCCCCcCCccccccCcccCCCeeeCCCCEEEEcccccccCCcCcCCCCCCCCC
Q 040199          341 KPNQDLVSFEQLRELHYLNAAVYESMRLFPPVQFDSKFAQEDDILPDGTFVRKGTRVTYHPYAMGRMERIWGPDCLEFKP  420 (502)
Q Consensus       341 ~~~~~~~~~~~l~~lp~l~a~i~E~lRl~p~~~~~~r~~~~~~~~~~g~~ipkGt~v~~~~~~~~~d~~~~g~~p~~F~P  420 (502)
                      +.+  .++++++++||||+|||+||+|++|+++.+.|++..++++++||.|||||.|+++.+++||||++| +||++|+|
T Consensus       324 ~~~--~~~~~~~~~lpyl~avi~EtlRl~p~~~~~~~r~~~~~~~~~g~~Ip~Gt~v~~~~~~~~rd~~~~-~dP~~F~P  400 (489)
T PLN02936        324 QGR--PPTYEDIKELKYLTRCINESMRLYPHPPVLIRRAQVEDVLPGGYKVNAGQDIMISVYNIHRSPEVW-ERAEEFVP  400 (489)
T ss_pred             cCC--CCCHHHHhhCHHHHHHHHHhhhcCCCcccccceeccCccccCCeEECCCCEEEecHHhccCChhhC-CCccccCc
Confidence            853  479999999999999999999999999998888877777779999999999999999999999999 99999999


Q ss_pred             CcccCCCCC--CCCCCCCCCCCCCCcccCccHHHHHHHHHHHHHHHhhcceEEecCCCCCCccccceeeeccCCeeEEEE
Q 040199          421 QRWLRNGRF--VPENPFKYPVFQAGHRVCLGKDIALVEMKSVALAVVRKFNIRVSDPNQAPRFAPGLTATVRGGLPVMVQ  498 (502)
Q Consensus       421 ~Rfl~~~~~--~~~~~~~~~~Fg~G~r~C~G~~~a~~~~~~~l~~ll~~f~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~  498 (502)
                      |||+.++..  .......++|||.|+|.|||+++|++|+++++++|+++|+++++++.+ .....+++..|+.+++|+++
T Consensus       401 eRwl~~~~~~~~~~~~~~~~pFg~G~R~C~G~~la~~~~~~~la~ll~~f~~~~~~~~~-~~~~~~~~~~~~~~~~v~~~  479 (489)
T PLN02936        401 ERFDLDGPVPNETNTDFRYIPFSGGPRKCVGDQFALLEAIVALAVLLQRLDLELVPDQD-IVMTTGATIHTTNGLYMTVS  479 (489)
T ss_pred             cccCCCCCCccccCCCcceeCCCCCCCCCCCHHHHHHHHHHHHHHHHHhCeEEecCCCc-cceecceEEeeCCCeEEEEE
Confidence            999964321  122345799999999999999999999999999999999999976532 23334577778899999999


Q ss_pred             EcC
Q 040199          499 ERG  501 (502)
Q Consensus       499 ~r~  501 (502)
                      +|+
T Consensus       480 ~R~  482 (489)
T PLN02936        480 RRR  482 (489)
T ss_pred             eee
Confidence            996


No 24 
>PLN02196 abscisic acid 8'-hydroxylase
Probab=100.00  E-value=2.1e-67  Score=510.62  Aligned_cols=420  Identities=20%  Similarity=0.283  Sum_probs=330.3

Q ss_pred             CCCCCCCCcccchhhhccccchhHHHHHHHHhCCCceEEEeeeC--eEEecChhhHHHHhccCCCCCCCCchhhHhhhhc
Q 040199           44 WCQCDACRSYLTFSWLKDFNNLCDWYTHLLAKSPTGTIHLHVLG--NTITSNPGNVEYILKTRFDNYPKGKPFSVILGDL  121 (502)
Q Consensus        44 ~~~~P~~~p~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~vvv~~p~~~~~i~~~~~~~~~~~~~~~~~~~~~  121 (502)
                      .||+|.++|++|+.+.....+.+.++.++.++||. +++++.++  +|+++||+++++++.++.+.|. .. +.......
T Consensus        36 ~Ppgp~~~P~iG~~~~~~~~~~~~~~~~~~~~yG~-i~~~~~~~~~~v~v~~p~~~~~vl~~~~~~~~-~~-~~~~~~~~  112 (463)
T PLN02196         36 LPPGTMGWPYVGETFQLYSQDPNVFFASKQKRYGS-VFKTHVLGCPCVMISSPEAAKFVLVTKSHLFK-PT-FPASKERM  112 (463)
T ss_pred             CCCCCCCCCccchHHHHHhcCHHHHHHHHHHHhhh-hheeeecCCceEEEcCHHHHHHHHhCCCCccc-cc-CchHHHHH
Confidence            67777789999865554456889999999999985 77777666  8999999999999987755553 22 22222234


Q ss_pred             cC-CcccccCChhHHHHHhhhccccchhhHHHHHHHHHHHHHHHhHHHHHHHhccCCCCceeHHHHHHHHHHHHhhhhhc
Q 040199          122 LG-RGIFNVDGDSWEFQRKMACFELGSFNIKMYALELVTAEIRSRLIPLLSSAANKDNNILDLQDVFRRFSFDSICKFSF  200 (502)
Q Consensus       122 ~g-~~i~~~~g~~w~~~R~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~vdl~~~~~~~~~~~i~~~~f  200 (502)
                      .| .+++..+|+.|+++|+++.+.|++.+++.+. +.+.+.+ +.+.+.+.     + +++|+.+.+..+++++++.++|
T Consensus       113 ~g~~~l~~~~g~~w~~~Rk~l~~~f~~~~l~~~~-~~i~~~~-~~~~~~~~-----~-~~v~~~~~~~~~~~~v~~~~~f  184 (463)
T PLN02196        113 LGKQAIFFHQGDYHAKLRKLVLRAFMPDAIRNMV-PDIESIA-QESLNSWE-----G-TQINTYQEMKTYTFNVALLSIF  184 (463)
T ss_pred             cCcccccccCcHHHHHHHHHHHHhcChHHHHHHH-HHHHHHH-HHHHHcCC-----C-CeEEeHHHHHHHHHHHHHHHHc
Confidence            45 4788899999999999999999999988875 5544433 33443331     2 4799999999999999999999


Q ss_pred             CCCCcccccCCCcchHHHHHHHHHHHHHHhhhCCCchhHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCC
Q 040199          201 GLDPECLMLNLPVSKFATAFDLASKLSAERALAPSPIVWKIKRLLNIGSEKQLKGAINLVNELAETMIHQRQQMGFSKKN  280 (502)
Q Consensus       201 G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~  280 (502)
                      |.+.....     ..+.+.+.....     .+...+      ..++....++..++.+.+.+++.+.|+++++.. ....
T Consensus       185 G~~~~~~~-----~~~~~~~~~~~~-----~~~~~~------~~~p~~~~~~~~~a~~~~~~~~~~~i~~~~~~~-~~~~  247 (463)
T PLN02196        185 GKDEVLYR-----EDLKRCYYILEK-----GYNSMP------INLPGTLFHKSMKARKELAQILAKILSKRRQNG-SSHN  247 (463)
T ss_pred             CCCCchHH-----HHHHHHHHHHhc-----chhccc------ccCCCccchHHHHHHHHHHHHHHHHHHHHhhcC-CCcc
Confidence            98742111     122222211110     011111      112212235566788889999999998877643 3467


Q ss_pred             cHHHHHHhcc--CChHHHHHHHHHHHHhchhchHhHHHHHHHHHhcCcHHHHHHHHHHHhhcCCC--CCCCCHHhhccCh
Q 040199          281 DLLSRFMASI--DDDKYLRDIVVSFLLAGRDTVASGLTSFFWLLSQHPEVESAIRNESDKIMKPN--QDLVSFEQLRELH  356 (502)
Q Consensus       281 dll~~ll~~~--~~~~~i~~~~~~~~~ag~~tt~~~l~~~l~~L~~~p~~q~~lr~Ei~~~~~~~--~~~~~~~~l~~lp  356 (502)
                      |+++.+++..  .+++++.++++++++||+|||+++++|++++|++||++|+|+++|++++.+..  ...+++++++++|
T Consensus       248 d~l~~ll~~~~~l~~~ei~~~~~~~~~Ag~dTta~~l~~~l~~L~~~P~vq~kl~~Ei~~~~~~~~~~~~~~~~~~~~l~  327 (463)
T PLN02196        248 DLLGSFMGDKEGLTDEQIADNIIGVIFAARDTTASVLTWILKYLAENPSVLEAVTEEQMAIRKDKEEGESLTWEDTKKMP  327 (463)
T ss_pred             cHHHHHHhcCCCCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHhcccccCCCCCHHHHhcCh
Confidence            8999998753  38899999999999999999999999999999999999999999999988642  3468999999999


Q ss_pred             hHHHHHhhhcCCCCCCcCCccccccCcccCCCeeeCCCCEEEEcccccccCCcCcCCCCCCCCCCcccCCCCCCCCCCCC
Q 040199          357 YLNAAVYESMRLFPPVQFDSKFAQEDDILPDGTFVRKGTRVTYHPYAMGRMERIWGPDCLEFKPQRWLRNGRFVPENPFK  436 (502)
Q Consensus       357 ~l~a~i~E~lRl~p~~~~~~r~~~~~~~~~~g~~ipkGt~v~~~~~~~~~d~~~~g~~p~~F~P~Rfl~~~~~~~~~~~~  436 (502)
                      ||+|||+|++|++|+++...|.+.+|..+ +||.|||||.|+++.+++|+||++| +||++|+||||+++.     ....
T Consensus       328 yl~avi~EtlRl~p~~~~~~R~~~~d~~i-~g~~IpkGt~v~~~~~~~~rd~~~~-~dP~~F~PeRfl~~~-----~~~~  400 (463)
T PLN02196        328 LTSRVIQETLRVASILSFTFREAVEDVEY-EGYLIPKGWKVLPLFRNIHHSADIF-SDPGKFDPSRFEVAP-----KPNT  400 (463)
T ss_pred             HHHHHHHHHHhcCCCccccceeecccccc-CCEEeCCCCEEEeeHHHhcCCchhc-CCcCccChhhhcCCC-----CCCc
Confidence            99999999999999999988999888766 9999999999999999999999999 999999999999633     3467


Q ss_pred             CCCCCCCcccCccHHHHHHHHHHHHHHHhhcceEEecCCCCCCccccceeeeccCCeeEEEEEc
Q 040199          437 YPVFQAGHRVCLGKDIALVEMKSVALAVVRKFNIRVSDPNQAPRFAPGLTATVRGGLPVMVQER  500 (502)
Q Consensus       437 ~~~Fg~G~r~C~G~~~a~~~~~~~l~~ll~~f~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~r  500 (502)
                      ++|||+|+|.|+|+++|++|++++++.|+++|++++++++..  .....+..|+++++|++++.
T Consensus       401 ~lpFG~G~r~C~G~~~A~~e~~~~la~ll~~f~~~~~~~~~~--~~~~~~~~p~~~~~~~~~~~  462 (463)
T PLN02196        401 FMPFGNGTHSCPGNELAKLEISVLIHHLTTKYRWSIVGTSNG--IQYGPFALPQNGLPIALSRK  462 (463)
T ss_pred             ccCcCCCCCCCchHHHHHHHHHHHHHHHHHhcEEEEcCCCCc--eEEcccccCCCCceEEEecC
Confidence            999999999999999999999999999999999999765432  23344567999999999864


No 25 
>PLN03018 homomethionine N-hydroxylase
Probab=100.00  E-value=7.1e-66  Score=504.25  Aligned_cols=451  Identities=18%  Similarity=0.257  Sum_probs=324.6

Q ss_pred             CCCCCCCCcccchhhhccccch-hHHHHHHHHhCCCceEEEeeeC--eEEecChhhHHHHhccCCCCCCCCchhhHhhhh
Q 040199           44 WCQCDACRSYLTFSWLKDFNNL-CDWYTHLLAKSPTGTIHLHVLG--NTITSNPGNVEYILKTRFDNYPKGKPFSVILGD  120 (502)
Q Consensus        44 ~~~~P~~~p~ig~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~--~vvv~~p~~~~~i~~~~~~~~~~~~~~~~~~~~  120 (502)
                      .||+|.++|++|+.+.....+. ...+.+..++|.+.++.++.++  +|+|+||+.+++++.++...|++++.... ...
T Consensus        41 ~PPgp~~~P~iGnl~~l~~~~~~~~~~~~~~~~~~g~i~~~~lg~~~~vvvsdpe~ikevl~~~~~~f~~rp~~~~-~~~  119 (534)
T PLN03018         41 LPPGPPGWPILGNLPELIMTRPRSKYFHLAMKELKTDIACFNFAGTHTITINSDEIAREAFRERDADLADRPQLSI-MET  119 (534)
T ss_pred             CCcCCCCCCeeccHHHhccCCCcchhHHHHHHHhCCCeEEEEeCCccEEEECCHHHHHHHHHhCcHhhcCCCCchh-hhh
Confidence            6889999999986654322222 1234444554422478887765  89999999999999987677876543322 221


Q ss_pred             ccC--Cccccc-CChhHHHHHhhhccccchhhHHHHHHHHHHHHHHHhHHHHHHHhccCCCCceeHHHHHHHHHHHHhhh
Q 040199          121 LLG--RGIFNV-DGDSWEFQRKMACFELGSFNIKMYALELVTAEIRSRLIPLLSSAANKDNNILDLQDVFRRFSFDSICK  197 (502)
Q Consensus       121 ~~g--~~i~~~-~g~~w~~~R~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~vdl~~~~~~~~~~~i~~  197 (502)
                      +.+  .+++.. +|+.|+++|+++++.|......+.. +.+.++..+.+.+.+.+....+ +++|+.+.+..++++++++
T Consensus       120 l~~~~~~i~~~~~G~~Wk~~Rk~l~~~~~~~~~~~~~-~~~~~~~~~~l~~~l~~~~~~~-~~vd~~~~~~~~t~~vi~~  197 (534)
T PLN03018        120 IGDNYKSMGTSPYGEQFMKMKKVITTEIMSVKTLNML-EAARTIEADNLIAYIHSMYQRS-ETVDVRELSRVYGYAVTMR  197 (534)
T ss_pred             hccCCCceEecCCCHHHHHHHHHHHHHhcCHHHHHHH-HHHHHHHHHHHHHHHHHhcccC-CceeHHHHHHHHHHHHHHH
Confidence            211  245554 5999999999999987555544444 5565555566778777543333 5799999999999999999


Q ss_pred             hhcCCCCcccccCC-CcchHHHHHHHHHHHHHH--hhhCCCchhHHHHHhcc----cchHHHHHHHHHHHHHHHHHHHHH
Q 040199          198 FSFGLDPECLMLNL-PVSKFATAFDLASKLSAE--RALAPSPIVWKIKRLLN----IGSEKQLKGAINLVNELAETMIHQ  270 (502)
Q Consensus       198 ~~fG~~~~~~~~~~-~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~~~~~----~~~~~~~~~~~~~~~~~~~~~i~~  270 (502)
                      ++||.+++..+... ....+...+.........  ...........+++++.    .+...+.....+.+.+++.++|++
T Consensus       198 ~~fG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~  277 (534)
T PLN03018        198 MLFGRRHVTKENVFSDDGRLGKAEKHHLEVIFNTLNCLPGFSPVDYVERWLRGWNIDGQEERAKVNVNLVRSYNNPIIDE  277 (534)
T ss_pred             HHhCCccccccccccccccchhHHHHHHHHHHHHHHHhCCCcHHHHhhhhhhhhcccchHHHHHHHHHHHHHHHHHHHHH
Confidence            99999875432100 001111212111111100  00101111111221111    122334455667788888888887


Q ss_pred             HHhc-----CCCCCCcHHHHHHhcc-------CChHHHHHHHHHHHHhchhchHhHHHHHHHHHhcCcHHHHHHHHHHHh
Q 040199          271 RQQM-----GFSKKNDLLSRFMASI-------DDDKYLRDIVVSFLLAGRDTVASGLTSFFWLLSQHPEVESAIRNESDK  338 (502)
Q Consensus       271 ~~~~-----~~~~~~dll~~ll~~~-------~~~~~i~~~~~~~~~ag~~tt~~~l~~~l~~L~~~p~~q~~lr~Ei~~  338 (502)
                      +++.     +.....|+++.+++..       .+++++.+++.++++||+|||+++++|++++|++||++|+|+++||++
T Consensus       278 ~~~~~~~~~~~~~~~d~l~~ll~~~~~~~~~~ls~~~i~~~~~~~~~aG~dTta~~l~~~l~~L~~~P~~q~kl~~Ei~~  357 (534)
T PLN03018        278 RVELWREKGGKAAVEDWLDTFITLKDQNGKYLVTPDEIKAQCVEFCIAAIDNPANNMEWTLGEMLKNPEILRKALKELDE  357 (534)
T ss_pred             HHHHhhhccCCCCcccHHHHHHHhhcccCCCCCCHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcCHHHHHHHHHHHHH
Confidence            7642     1112468999998632       378899999999999999999999999999999999999999999999


Q ss_pred             hcCCCCCCCCHHhhccChhHHHHHhhhcCCCCCCcCCc-cccccCcccCCCeeeCCCCEEEEcccccccCCcCcCCCCCC
Q 040199          339 IMKPNQDLVSFEQLRELHYLNAAVYESMRLFPPVQFDS-KFAQEDDILPDGTFVRKGTRVTYHPYAMGRMERIWGPDCLE  417 (502)
Q Consensus       339 ~~~~~~~~~~~~~l~~lp~l~a~i~E~lRl~p~~~~~~-r~~~~~~~~~~g~~ipkGt~v~~~~~~~~~d~~~~g~~p~~  417 (502)
                      +++.+. .++.+++.+||||+|||+|++|++|+++... |.+.+|.++ +||.|||||.|.++.+++|+||++| +||++
T Consensus       358 v~~~~~-~~~~~~~~~lpyl~a~i~EtlRl~p~~~~~~~r~~~~d~~i-~G~~IpkGt~V~~~~~~~~~dp~~~-~~p~~  434 (534)
T PLN03018        358 VVGKDR-LVQESDIPNLNYLKACCRETFRIHPSAHYVPPHVARQDTTL-GGYFIPKGSHIHVCRPGLGRNPKIW-KDPLV  434 (534)
T ss_pred             HhCCCC-CCCHHHhcCCHHHHHHHHHHHhcCCCccccCCcccCCCeeE-CCEEECCCCEEEEChHHhcCCcccC-CCccc
Confidence            998653 6899999999999999999999999999875 666766666 9999999999999999999999999 99999


Q ss_pred             CCCCcccCCCCCC-----CCCCCCCCCCCCCcccCccHHHHHHHHHHHHHHHhhcceEEecCCCCCCcc--ccceeeecc
Q 040199          418 FKPQRWLRNGRFV-----PENPFKYPVFQAGHRVCLGKDIALVEMKSVALAVVRKFNIRVSDPNQAPRF--APGLTATVR  490 (502)
Q Consensus       418 F~P~Rfl~~~~~~-----~~~~~~~~~Fg~G~r~C~G~~~a~~~~~~~l~~ll~~f~~~~~~~~~~~~~--~~~~~~~~~  490 (502)
                      |+||||++++...     ......++|||+|+|.|||+++|++|+++++++|+++|++++.+++.....  ..+.+. .+
T Consensus       435 F~PeRfl~~~~~~~~~~~~~~~~~~lpFG~G~R~C~G~~lA~~e~~~~la~ll~~f~~~~~~~~~~~~~~~~~~~~~-~p  513 (534)
T PLN03018        435 YEPERHLQGDGITKEVTLVETEMRFVSFSTGRRGCVGVKVGTIMMVMMLARFLQGFNWKLHQDFGPLSLEEDDASLL-MA  513 (534)
T ss_pred             cCCccCCCCCCccccccccCCCCCccCCCCCCCCCccHHHHHHHHHHHHHHHHHhceEEeCCCCCCCCcccccccee-cC
Confidence            9999999643211     124567999999999999999999999999999999999998765422222  224444 45


Q ss_pred             CCeeEEEEEcC
Q 040199          491 GGLPVMVQERG  501 (502)
Q Consensus       491 ~~~~v~~~~r~  501 (502)
                      .+++|.+++|.
T Consensus       514 ~~~~v~~~~R~  524 (534)
T PLN03018        514 KPLLLSVEPRL  524 (534)
T ss_pred             CCeEEEEEecc
Confidence            79999999994


No 26 
>PF00067 p450:  Cytochrome P450 p450 superfamily signature b-class p450 signature mitochondrial p450 signature E-class p450 group I signature E-class p450 group II signature E-class p450 group IV signature;  InterPro: IPR001128 Cytochrome P450 enzymes are a superfamily of haem-containing mono-oxygenases that are found in all kingdoms of life, and which show extraordinary diversity in their reaction chemistry. In mammals, these proteins are found primarily in microsomes of hepatocytes and other cell types, where they oxidise steroids, fatty acids and xenobiotics, and are important for the detoxification and clearance of various compounds, as well as for hormone synthesis and breakdown, cholesterol synthesis and vitamin D metabolism. In plants, these proteins are important for the biosynthesis of several compounds such as hormones, defensive compounds and fatty acids. In bacteria, they are important for several metabolic processes, such as the biosynthesis of antibiotic erythromycin in Saccharopolyspora erythraea (Streptomyces erythraeus). Cytochrome P450 enzymes use haem to oxidise their substrates, using protons derived from NADH or NADPH to split the oxygen so a single atom can be added to a substrate. They also require electrons, which they receive from a variety of redox partners. In certain cases, cytochrome P450 can be fused to its redox partner to produce a bi-functional protein, such as with P450BM-3 from Bacillus megaterium [], which has haem and flavin domains. Organisms produce many different cytochrome P450 enzymes (at least 58 in humans), which together with alternative splicing can provide a wide array of enzymes with different substrate and tissue specificities. Individual cytochrome P450 proteins follow the nomenclature: CYP, followed by a number (family), then a letter (subfamily), and another number (protein); e.g. CYP3A4 is the fourth protein in family 3, subfamily A. In general, family members should share >40% identity, while subfamily members should share >55% identity. Cytochrome P450 proteins can also be grouped by two different schemes. One scheme was based on a taxonomic split: class I (prokaryotic/mitochondrial) and class II (eukaryotic microsomes). The other scheme was based on the number of components in the system: class B (3-components) and class E (2-components). These classes merge to a certain degree. Most prokaryotes and mitochondria (and fungal CYP55) have 3-component systems (class I/class B) - a FAD-containing flavoprotein (NAD(P)H-dependent reductase), an iron-sulphur protein and P450. Most eukaryotic microsomes have 2-component systems (class II/class E) - NADPH:P450 reductase (FAD and FMN-containing flavoprotein) and P450. There are exceptions to this scheme, such as 1-component systems that resemble class E enzymes [, , ]. The class E enzymes can be further subdivided into five sequence clusters, groups I-V, each of which may contain more than one cytochrome P450 family (eg, CYP1 and CYP2 are both found in group I). The divergence of the cytochrome P450 superfamily into B- and E-classes, and further divergence into stable clusters within the E-class, appears to be very ancient, occurring before the appearance of eukaryotes. More information about these proteins can be found at Protein of the Month: Cytochrome P450 [].; GO: 0005506 iron ion binding, 0009055 electron carrier activity, 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0020037 heme binding, 0055114 oxidation-reduction process; PDB: 2RFC_B 2RFB_A 3EJB_H 3EJE_H 3EJD_H 1N6B_A 1NR6_A 1DT6_A 3EL3_A 3DBG_B ....
Probab=100.00  E-value=8.6e-68  Score=520.72  Aligned_cols=443  Identities=26%  Similarity=0.382  Sum_probs=346.5

Q ss_pred             CCCCCCCcccchhhhcc-ccchhHHHHHHHHhCCCceEEEeeeC--eEEecChhhHHHHhccCCCCCCCCch---hhHhh
Q 040199           45 CQCDACRSYLTFSWLKD-FNNLCDWYTHLLAKSPTGTIHLHVLG--NTITSNPGNVEYILKTRFDNYPKGKP---FSVIL  118 (502)
Q Consensus        45 ~~~P~~~p~ig~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~--~vvv~~p~~~~~i~~~~~~~~~~~~~---~~~~~  118 (502)
                      ||+|.++|++|+.+... ..+.++++.++.++||. +++++.++  .++|+||+.+++++.++...++....   .....
T Consensus         1 Ppgp~~~p~~G~~~~~~~~~~~~~~~~~~~~kyG~-i~~~~~~~~~~vvv~~pe~~~~il~~~~~~~~~~~~~~~~~~~~   79 (463)
T PF00067_consen    1 PPGPPPLPILGNLLQFRRKGNPHEFFRELHKKYGP-IFRIWPGGQPIVVVSDPELIKEILRSRSKYFSFRPRPPWFEIFR   79 (463)
T ss_dssp             SSCSSSBTTTBTHHHHHTTHHHHHHHHHHHHHHTS-EEEEEETTEEEEEEESHHHHHHHHTTTTTTEEEEHCHHHHHHHH
T ss_pred             CcCCCCcCceeEHHHhcCCCcHHHHHHHHHHHhCC-EEEEeEecccccccccchhhcccccccccccccccccccccccc
Confidence            78999999998666655 47899999999999975 88998877  79999999999999988555553211   11112


Q ss_pred             hhccCCcccccCChhHHHHHhhhccccchh-hHHHHHHHHHHHHHHHhHHHHHHHhccCCCCceeHHHHHHHHHHHHhhh
Q 040199          119 GDLLGRGIFNVDGDSWEFQRKMACFELGSF-NIKMYALELVTAEIRSRLIPLLSSAANKDNNILDLQDVFRRFSFDSICK  197 (502)
Q Consensus       119 ~~~~g~~i~~~~g~~w~~~R~~~~~~~~~~-~l~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~vdl~~~~~~~~~~~i~~  197 (502)
                      ....+.+++..+|+.|+.+|+.+.+.|+.. .+ .+  ...+++..+.+.+.+.+....+ +.+|+.+++..+++++++.
T Consensus        80 ~~~~~~~l~~~~~~~~~~~R~~~~~~~~~~~~~-~~--~~~i~~~~~~l~~~l~~~~~~~-~~vd~~~~~~~~~~d~i~~  155 (463)
T PF00067_consen   80 GPFGGKGLFFSDGERWRRQRRLLAPAFSSKKIL-KL--EPLIDEEAEELIDQLRKKAGSS-GPVDLFDWLRRFALDVIGR  155 (463)
T ss_dssp             HHHTTTSSTTSSHHHHHHHHHHHHHHHSHHHHH-HH--HHHHHHHHHHHHHHHHHTTTSE-SEEEHHHHHHHHHHHHHHH
T ss_pred             ccccccccccccccccccccccccccccccccc-cc--cccccccccccccccccccccc-ceeeeeccccccccccccc
Confidence            245678899999999999999999999887 55 55  4555666677888888866654 4899999999999999999


Q ss_pred             hhcCCCCcccccCCCcchHHHHHHHHHHHHHHhhhCCCchhHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHhcCC-
Q 040199          198 FSFGLDPECLMLNLPVSKFATAFDLASKLSAERALAPSPIVWKIKRLLNIGSEKQLKGAINLVNELAETMIHQRQQMGF-  276 (502)
Q Consensus       198 ~~fG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-  276 (502)
                      ++||.++++.+.. ...++.+.+..+...............+ +..+++....+...++.+.+.+++.++++++++... 
T Consensus       156 ~~fG~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~  233 (463)
T PF00067_consen  156 VLFGKDFGSLDDE-DFEEFLEAFDELFELLSNFFWNLPFFFP-WLKYLPTPLFRRFKRARDRLRKYIKEIIEERREELDD  233 (463)
T ss_dssp             HHHSSHHHGTTHH-HHHHHHHHHHHHHHHHHSHHHHHHHHHH-HHCTSSHHHHHHHHHHHHHHHHHHHHHHHHHHHSHHS
T ss_pred             ccccceeeecccc-cccccccccccccccccccccccccccc-ccccccccccccccccccccccccccccccccccccc
Confidence            9999987644321 1124444444443322111000001111 222233344566677788999999999999886522 


Q ss_pred             --CCCCcHHHHHHhcc--------CChHHHHHHHHHHHHhchhchHhHHHHHHHHHhcCcHHHHHHHHHHHhhcCCCCCC
Q 040199          277 --SKKNDLLSRFMASI--------DDDKYLRDIVVSFLLAGRDTVASGLTSFFWLLSQHPEVESAIRNESDKIMKPNQDL  346 (502)
Q Consensus       277 --~~~~dll~~ll~~~--------~~~~~i~~~~~~~~~ag~~tt~~~l~~~l~~L~~~p~~q~~lr~Ei~~~~~~~~~~  346 (502)
                        ....|+++.+++..        .+++++.+++..+++||+|||+.+++|++++|++||++|+||++||+++.+++. .
T Consensus       234 ~~~~~~d~l~~ll~~~~~~~~~~~ls~~~i~~~~~~~~~ag~dtt~~~l~~~l~~L~~~P~~~~kl~~Ei~~~~~~~~-~  312 (463)
T PF00067_consen  234 GDESRRDLLDSLLQASSDSDGPSGLSDEEIAAELLTLLFAGHDTTASTLSWTLYELAKNPEVQEKLREEIDSVLGDGR-E  312 (463)
T ss_dssp             SSSSCSSHHHHHHHHHHTTTTTSSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHTTTSS-S
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-c
Confidence              35789999999874        278999999999999999999999999999999999999999999999996544 6


Q ss_pred             CCHHhhccChhHHHHHhhhcCCCCCCc-CCccccccCcccCCCeeeCCCCEEEEcccccccCCcCcCCCCCCCCCCcccC
Q 040199          347 VSFEQLRELHYLNAAVYESMRLFPPVQ-FDSKFAQEDDILPDGTFVRKGTRVTYHPYAMGRMERIWGPDCLEFKPQRWLR  425 (502)
Q Consensus       347 ~~~~~l~~lp~l~a~i~E~lRl~p~~~-~~~r~~~~~~~~~~g~~ipkGt~v~~~~~~~~~d~~~~g~~p~~F~P~Rfl~  425 (502)
                      ++.+++++||||+|||+||+|++|+++ .+.|.+.+|.++ +||.|||||.|+++.+++|+||++| +||++|+||||++
T Consensus       313 ~~~~~l~~l~yl~a~i~EtlRl~p~~~~~~~R~~~~d~~l-~g~~ip~gt~v~~~~~~~~~d~~~~-~dp~~F~P~R~~~  390 (463)
T PF00067_consen  313 ITFEDLSKLPYLDAVIKETLRLYPPVPFSLPRVATEDVTL-GGYFIPKGTIVIVSIYALHRDPEYF-PDPDEFDPERFLD  390 (463)
T ss_dssp             HHHHHHGTGHHHHHHHHHHHHHSTSSSTEEEEEESSSEEE-TTEEEETTSEEEEEHHHHTTSTTTS-SSTTS--TTGGBT
T ss_pred             cccccccccccccccccccccccccccccccccccccccc-ccccccccccccccccccccccccc-ccccccccccccc
Confidence            899999999999999999999999999 566999888777 8899999999999999999999999 9999999999998


Q ss_pred             CCCCCCCCCCCCCCCCCCcccCccHHHHHHHHHHHHHHHhhcceEEecCCCC-CCccccceeeeccCCeeEEE
Q 040199          426 NGRFVPENPFKYPVFQAGHRVCLGKDIALVEMKSVALAVVRKFNIRVSDPNQ-APRFAPGLTATVRGGLPVMV  497 (502)
Q Consensus       426 ~~~~~~~~~~~~~~Fg~G~r~C~G~~~a~~~~~~~l~~ll~~f~~~~~~~~~-~~~~~~~~~~~~~~~~~v~~  497 (502)
                      .+.....+...++|||+|+|.|||+++|++|+++++|++|++||+++.++.. .+.........|+.++.|.|
T Consensus       391 ~~~~~~~~~~~~~~Fg~G~r~C~G~~~A~~~~~~~la~ll~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  463 (463)
T PF00067_consen  391 ERGISNRPSFAFLPFGAGPRMCPGRNLAMMEMKVFLAKLLRRFDFELVPGSEPEPQEQQNGFLLPPKPLKVKF  463 (463)
T ss_dssp             TTSTBCSSSTTSSTTESSTTS-TTHHHHHHHHHHHHHHHHHHEEEEESTTSSGGEEECSCSSSEEESSSEEEE
T ss_pred             cccccccccccccccccccccchHHHHHHHHHHHHHHHHHHhCEEEECCCCCCCCccccCceEeeCCCcEEeC
Confidence            7653345678899999999999999999999999999999999999976543 22222212345667777765


No 27 
>PLN03141 3-epi-6-deoxocathasterone 23-monooxygenase; Provisional
Probab=100.00  E-value=1.7e-66  Score=503.72  Aligned_cols=427  Identities=16%  Similarity=0.182  Sum_probs=330.1

Q ss_pred             cCCCCCCCCCCcccchhhhcc----ccchhHHHHHHHHhCCCceEEEeeeC--eEEecChhhHHHHhccCCCCCCCCchh
Q 040199           41 LKPWCQCDACRSYLTFSWLKD----FNNLCDWYTHLLAKSPTGTIHLHVLG--NTITSNPGNVEYILKTRFDNYPKGKPF  114 (502)
Q Consensus        41 ~~~~~~~P~~~p~ig~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~--~vvv~~p~~~~~i~~~~~~~~~~~~~~  114 (502)
                      .++.||||.++|++|+.+...    ..+.+.++.++.++||. ++.++.++  .||++||+.+++++.+++..|+.+ + 
T Consensus         5 ~~~~Ppg~~~~P~iG~~~~l~~~~~~~~~~~~~~~~~~~yG~-i~~~~lg~~~~vvv~~p~~~~~vl~~~~~~~~~~-~-   81 (452)
T PLN03141          5 KSRLPKGSLGWPVIGETLDFISCAYSSRPESFMDKRRSLYGK-VFKSHIFGTPTIVSTDAEVNKVVLQSDGNAFVPA-Y-   81 (452)
T ss_pred             CCCCCCCCCCCCchhhHHHHHhhcccCChHHHHHHHHHHhhh-eeeeccCCCCEEEEeCHHHhhHHHhCCCCeeecc-C-
Confidence            344788999999998665432    24688899999999986 88888766  899999999999999876666533 1 


Q ss_pred             hHhhhhccCC-cccccCChhHHHHHhhhccccchhhHHHHHHHHHHHHHHHhHHHHHHHhccCCCCceeHHHHHHHHHHH
Q 040199          115 SVILGDLLGR-GIFNVDGDSWEFQRKMACFELGSFNIKMYALELVTAEIRSRLIPLLSSAANKDNNILDLQDVFRRFSFD  193 (502)
Q Consensus       115 ~~~~~~~~g~-~i~~~~g~~w~~~R~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~vdl~~~~~~~~~~  193 (502)
                      ......++|. +++..+|+.||++|+++.+.|+..++.....+.+    .+.+.+.+++.. .+ +++|+.+.+..++++
T Consensus        82 ~~~~~~l~g~~~~~~~~g~~wr~~r~~~~~~~~~~~l~~~~~~~~----~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~  155 (452)
T PLN03141         82 PKSLTELMGKSSILLINGSLQRRVHGLIGAFLKSPHLKAQITRDM----ERYVSESLDSWR-DD-PPVLVQDETKKIAFE  155 (452)
T ss_pred             chhHHHHhCcccccccCcHHHHHHHHHHHHhcCcHHHHHHHHHHH----HHHHHHHHHhcc-CC-CCEEhHHHHHHHHHH
Confidence            1223334554 6888899999999999999998777765431222    222222333322 22 579999999999999


Q ss_pred             HhhhhhcCCCCcccccCCCcchHHHHHHHHHHHHHHhhhCCCchhHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHh
Q 040199          194 SICKFSFGLDPECLMLNLPVSKFATAFDLASKLSAERALAPSPIVWKIKRLLNIGSEKQLKGAINLVNELAETMIHQRQQ  273 (502)
Q Consensus       194 ~i~~~~fG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~  273 (502)
                      ++++++||.+.+..     ..++.+.+..+.....     ..+.      +++.....+..++.+.+.+++.++|+++++
T Consensus       156 vi~~~~~G~~~~~~-----~~~~~~~~~~~~~~~~-----~~~~------~~p~~~~~~~~~~~~~l~~~~~~~i~~~~~  219 (452)
T PLN03141        156 VLVKALISLEPGEE-----MEFLKKEFQEFIKGLM-----SLPI------KLPGTRLYRSLQAKKRMVKLVKKIIEEKRR  219 (452)
T ss_pred             HHHHHHcCCCchHH-----HHHHHHHHHHHhhhHH-----hCcc------CCCchHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999765321     1223333332222111     1111      112122244556788899999999988765


Q ss_pred             cCC-C------CCCcHHHHHHhccC---ChHHHHHHHHHHHHhchhchHhHHHHHHHHHhcCcHHHHHHHHHHHhhcC--
Q 040199          274 MGF-S------KKNDLLSRFMASID---DDKYLRDIVVSFLLAGRDTVASGLTSFFWLLSQHPEVESAIRNESDKIMK--  341 (502)
Q Consensus       274 ~~~-~------~~~dll~~ll~~~~---~~~~i~~~~~~~~~ag~~tt~~~l~~~l~~L~~~p~~q~~lr~Ei~~~~~--  341 (502)
                      ... .      ...|+++.+++...   +++++..++.++++||+|||+.+++|++++|++||++|+|+++|++++.+  
T Consensus       220 ~~~~~~~~~~~~~~d~l~~ll~~~~~~l~~~~i~~~~~~ll~Ag~dTts~tl~~~~~~L~~~P~v~~kl~~Ei~~~~~~~  299 (452)
T PLN03141        220 AMKNKEEDETGIPKDVVDVLLRDGSDELTDDLISDNMIDMMIPGEDSVPVLMTLAVKFLSDCPVALQQLTEENMKLKRLK  299 (452)
T ss_pred             HHhccCccccCChhhHHHHHHhcCCCCCCHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHhChHHHHHHHHHHHHHHhcc
Confidence            311 1      24689999998653   78899999999999999999999999999999999999999999998864  


Q ss_pred             -CCCCCCCHHhhccChhHHHHHhhhcCCCCCCcCCccccccCcccCCCeeeCCCCEEEEcccccccCCcCcCCCCCCCCC
Q 040199          342 -PNQDLVSFEQLRELHYLNAAVYESMRLFPPVQFDSKFAQEDDILPDGTFVRKGTRVTYHPYAMGRMERIWGPDCLEFKP  420 (502)
Q Consensus       342 -~~~~~~~~~~l~~lp~l~a~i~E~lRl~p~~~~~~r~~~~~~~~~~g~~ipkGt~v~~~~~~~~~d~~~~g~~p~~F~P  420 (502)
                       ..+..++.+++.+||||+|||+|++|++|+++.+.|.+.+|.++ +||.||||+.|+++.+++|+||++| +||++|+|
T Consensus       300 ~~~~~~~~~~~~~~lpyl~avi~E~lRl~p~~~~~~R~~~~d~~l-~g~~IPkG~~V~~~~~~~~~d~~~~-~dP~~F~P  377 (452)
T PLN03141        300 ADTGEPLYWTDYMSLPFTQNVITETLRMGNIINGVMRKAMKDVEI-KGYLIPKGWCVLAYFRSVHLDEENY-DNPYQFNP  377 (452)
T ss_pred             CCCCCCCCHHHHhccHHHHHHHHHHHhccCCcCCcceeecCCeeE-CCEEECCCCEEEEehHhccCCchhc-CCccccCc
Confidence             22345899999999999999999999999998888888888777 9999999999999999999999999 99999999


Q ss_pred             CcccCCCCCCCCCCCCCCCCCCCcccCccHHHHHHHHHHHHHHHhhcceEEecCCCCCCccccceeeeccCCeeEEEEEc
Q 040199          421 QRWLRNGRFVPENPFKYPVFQAGHRVCLGKDIALVEMKSVALAVVRKFNIRVSDPNQAPRFAPGLTATVRGGLPVMVQER  500 (502)
Q Consensus       421 ~Rfl~~~~~~~~~~~~~~~Fg~G~r~C~G~~~a~~~~~~~l~~ll~~f~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~r  500 (502)
                      |||++++.    .+..++|||+|+|+|+|+++|++|+++++|+|+++|++++.++.. .   ...++.|..+++|.+++|
T Consensus       378 eRfl~~~~----~~~~~~pFG~G~R~C~G~~lA~~el~~~la~ll~~f~~~~~~~~~-~---~~~~~~~~~~~~~~~~~~  449 (452)
T PLN03141        378 WRWQEKDM----NNSSFTPFGGGQRLCPGLDLARLEASIFLHHLVTRFRWVAEEDTI-V---NFPTVRMKRKLPIWVTRI  449 (452)
T ss_pred             ccccCCCC----CCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHhcCeeecCCCCe-e---ecccccCCCCceEEEEeC
Confidence            99996531    356799999999999999999999999999999999999876532 1   234778999999999999


Q ss_pred             CC
Q 040199          501 GD  502 (502)
Q Consensus       501 ~~  502 (502)
                      ++
T Consensus       450 ~~  451 (452)
T PLN03141        450 DD  451 (452)
T ss_pred             CC
Confidence            75


No 28 
>PLN02987 Cytochrome P450, family 90, subfamily A
Probab=100.00  E-value=5.1e-65  Score=491.83  Aligned_cols=425  Identities=19%  Similarity=0.235  Sum_probs=326.9

Q ss_pred             CCCCCCCCcccchhhhcc----ccchhHHHHHHHHhCCCceEEEeeeC--eEEecChhhHHHHhccCCCCCCCCchhhHh
Q 040199           44 WCQCDACRSYLTFSWLKD----FNNLCDWYTHLLAKSPTGTIHLHVLG--NTITSNPGNVEYILKTRFDNYPKGKPFSVI  117 (502)
Q Consensus        44 ~~~~P~~~p~ig~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~--~vvv~~p~~~~~i~~~~~~~~~~~~~~~~~  117 (502)
                      .||+|.++|++|+.+...    ..+++.++.++.++||. +++++.++  +++++||+.+++++.++...|.++.. . .
T Consensus        31 lppgp~~~P~iG~~~~~~~~~~~~~~~~~~~~~~~~yG~-v~~~~l~~~~~vvv~~pe~~~~il~~~~~~f~~~~~-~-~  107 (472)
T PLN02987         31 LPPGSLGLPLVGETLQLISAYKTENPEPFIDERVARYGS-LFMTHLFGEPTVFSADPETNRFILQNEGKLFECSYP-G-S  107 (472)
T ss_pred             CcCCCcCCCchhhHHHHHhhcccCChHHHHHHHHHHhch-hhhhhhcCCCeEEEeCHHHHHHHHhCCCceEEecCc-H-H
Confidence            678888999998655432    24678888999999985 77777665  89999999999999987677765422 2 2


Q ss_pred             hhhccC-CcccccCChhHHHHHhhhccccchhhHHHHHHHHHHHHHHHhHHHHHHHhccCCCCceeHHHHHHHHHHHHhh
Q 040199          118 LGDLLG-RGIFNVDGDSWEFQRKMACFELGSFNIKMYALELVTAEIRSRLIPLLSSAANKDNNILDLQDVFRRFSFDSIC  196 (502)
Q Consensus       118 ~~~~~g-~~i~~~~g~~w~~~R~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~vdl~~~~~~~~~~~i~  196 (502)
                      ...++| +|++..+|+.|+++|+++.+.++...++.+.    .+++.+.+...+++.   + +++|+.+.+.++++++++
T Consensus       108 ~~~~lg~~~l~~~~g~~wr~~R~~~~~f~~~~~~~~~~----~~~~~~~~~~~~~~~---~-~~v~~~~~~~~~t~~vi~  179 (472)
T PLN02987        108 ISNLLGKHSLLLMKGNLHKKMHSLTMSFANSSIIKDHL----LLDIDRLIRFNLDSW---S-SRVLLMEEAKKITFELTV  179 (472)
T ss_pred             HHHHhCcccccccCcHHHHHHHHHHHHhcChHHHHHHH----HHHHHHHHHHHHHhh---c-cceehHHHHHHHHHHHHH
Confidence            224445 5788889999999999987533444454432    122222222233332   1 369999999999999999


Q ss_pred             hhhcCCCCcccccCCCcchHHHHHHHHHHHHHHhhhCCCchhHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHhcC-
Q 040199          197 KFSFGLDPECLMLNLPVSKFATAFDLASKLSAERALAPSPIVWKIKRLLNIGSEKQLKGAINLVNELAETMIHQRQQMG-  275 (502)
Q Consensus       197 ~~~fG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-  275 (502)
                      +++||.+.+...     ..+.+.+.......   ...+.|+      +.  +..++..++.+++.+++.+.|+++++.. 
T Consensus       180 ~~~fg~~~~~~~-----~~~~~~~~~~~~~~---~~~~~p~------l~--~~~~~~~~~~~~~~~~~~~~i~~r~~~~~  243 (472)
T PLN02987        180 KQLMSFDPGEWT-----ESLRKEYVLVIEGF---FSVPLPL------FS--TTYRRAIQARTKVAEALTLVVMKRRKEEE  243 (472)
T ss_pred             HHHcCCCChHHH-----HHHHHHHHHHHhhh---hcCCCcC------CC--chHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence            999997653221     22222222221111   0111121      11  2346677888999999999999887632 


Q ss_pred             --CCCCCcHHHHHHhccC--ChHHHHHHHHHHHHhchhchHhHHHHHHHHHhcCcHHHHHHHHHHHhhcCC--CCCCCCH
Q 040199          276 --FSKKNDLLSRFMASID--DDKYLRDIVVSFLLAGRDTVASGLTSFFWLLSQHPEVESAIRNESDKIMKP--NQDLVSF  349 (502)
Q Consensus       276 --~~~~~dll~~ll~~~~--~~~~i~~~~~~~~~ag~~tt~~~l~~~l~~L~~~p~~q~~lr~Ei~~~~~~--~~~~~~~  349 (502)
                        .....|+++.+++...  +++++.+++..+++||+|||+.+++|++++|++||++|+|+++|++++.+.  +...+++
T Consensus       244 ~~~~~~~d~l~~ll~~~~~~~~~ei~~~~~~l~~Ag~~tta~~l~~~l~~L~~~P~~~~~l~~E~~~~~~~~~~~~~~~~  323 (472)
T PLN02987        244 EGAEKKKDMLAALLASDDGFSDEEIVDFLVALLVAGYETTSTIMTLAVKFLTETPLALAQLKEEHEKIRAMKSDSYSLEW  323 (472)
T ss_pred             ccCcccccHHHHHHhcCCCCCHHHHHHHHHHHHHhccchHHHHHHHHHHHHHhChHHHHHHHHHHHHHHcccCCCCCCCH
Confidence              1245799999997643  789999999999999999999999999999999999999999999998753  2345799


Q ss_pred             HhhccChhHHHHHhhhcCCCCCCcCCccccccCcccCCCeeeCCCCEEEEcccccccCCcCcCCCCCCCCCCcccCCCCC
Q 040199          350 EQLRELHYLNAAVYESMRLFPPVQFDSKFAQEDDILPDGTFVRKGTRVTYHPYAMGRMERIWGPDCLEFKPQRWLRNGRF  429 (502)
Q Consensus       350 ~~l~~lp~l~a~i~E~lRl~p~~~~~~r~~~~~~~~~~g~~ipkGt~v~~~~~~~~~d~~~~g~~p~~F~P~Rfl~~~~~  429 (502)
                      +++.++||++||++|++|++|+++...|++.+|.++ +||.|||||.|+++.+++|+||++| +||++|+||||++++..
T Consensus       324 ~~l~~lpyl~a~i~EtLRl~p~~~~~~R~~~~d~~~-~G~~ip~Gt~v~~~~~~~~~d~~~~-~~p~~F~PeRfl~~~~~  401 (472)
T PLN02987        324 SDYKSMPFTQCVVNETLRVANIIGGIFRRAMTDIEV-KGYTIPKGWKVFASFRAVHLDHEYF-KDARTFNPWRWQSNSGT  401 (472)
T ss_pred             HHHhcChHHHHHHHHHHHccCCcCCccccCCCCeeE-CCEEECCCCEEEEehHHhhCCcccC-CCccccCcccCCCCCCC
Confidence            999999999999999999999998778888888776 9999999999999999999999999 99999999999975432


Q ss_pred             CCCCCCCCCCCCCCcccCccHHHHHHHHHHHHHHHhhcceEEecCCCCCCccccceeeeccCCeeEEEEEcC
Q 040199          430 VPENPFKYPVFQAGHRVCLGKDIALVEMKSVALAVVRKFNIRVSDPNQAPRFAPGLTATVRGGLPVMVQERG  501 (502)
Q Consensus       430 ~~~~~~~~~~Fg~G~r~C~G~~~a~~~~~~~l~~ll~~f~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~r~  501 (502)
                      . .....++|||+|+|.|||+++|++|++++++.|+++|++++.++++ ..+  ..+..|.+++++++++|+
T Consensus       402 ~-~~~~~~l~FG~G~r~C~G~~lA~~e~~~~la~ll~~f~~~~~~~~~-~~~--~~~~~p~~~~~~~~~~r~  469 (472)
T PLN02987        402 T-VPSNVFTPFGGGPRLCPGYELARVALSVFLHRLVTRFSWVPAEQDK-LVF--FPTTRTQKRYPINVKRRD  469 (472)
T ss_pred             C-CCCcceECCCCCCcCCCcHHHHHHHHHHHHHHHHhceEEEECCCCc-eee--cccccCCCCceEEEEecc
Confidence            1 2345789999999999999999999999999999999999976542 222  447889999999999996


No 29 
>PLN02302 ent-kaurenoic acid oxidase
Probab=100.00  E-value=3.4e-64  Score=495.27  Aligned_cols=426  Identities=17%  Similarity=0.267  Sum_probs=326.1

Q ss_pred             CCCCCCCCCcccchhhhcc----ccchhHHHHHHHHhCCC-ceEEEeeeC--eEEecChhhHHHHhccCCCCCCCCchhh
Q 040199           43 PWCQCDACRSYLTFSWLKD----FNNLCDWYTHLLAKSPT-GTIHLHVLG--NTITSNPGNVEYILKTRFDNYPKGKPFS  115 (502)
Q Consensus        43 ~~~~~P~~~p~ig~~~~~~----~~~~~~~~~~~~~~~~~-~~~~~~~~~--~vvv~~p~~~~~i~~~~~~~~~~~~~~~  115 (502)
                      +.||+|.++|++|+.+...    ..+.++++.++.++||. .+++++.++  +++++||+.+++++.++ +.|.++.+..
T Consensus        42 ~lpPgp~~~PilG~l~~~~~~~~~~~~~~~~~~~~~kyG~~~i~~~~~~~~~~vvv~~pe~~~~vl~~~-~~f~~~~~~~  120 (490)
T PLN02302         42 PLPPGDLGWPVIGNMWSFLRAFKSSNPDSFIASFISRYGRTGIYKAFMFGQPTVLVTTPEACKRVLTDD-DAFEPGWPES  120 (490)
T ss_pred             CCcCCCCCCCccccHHHHHHhcccCCcHHHHHHHHHHhCCCcceeeecCCCCeEEEcCHHHHHHHHcCC-CccccCCchh
Confidence            3788999999998644321    34688899999999985 367776665  89999999999999876 5676543322


Q ss_pred             HhhhhccCC-cccccCChhHHHHHhhhccccc-hhhHHHHHHHHHHHHHHHhHHHHHHHhccCCCCceeHHHHHHHHHHH
Q 040199          116 VILGDLLGR-GIFNVDGDSWEFQRKMACFELG-SFNIKMYALELVTAEIRSRLIPLLSSAANKDNNILDLQDVFRRFSFD  193 (502)
Q Consensus       116 ~~~~~~~g~-~i~~~~g~~w~~~R~~~~~~~~-~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~vdl~~~~~~~~~~  193 (502)
                       ... ..|. +++..+|+.|+++|+.+.+.|+ .++++.+. +.+.+++ +.+.+.+   ...  +.+|+.+.+..++++
T Consensus       121 -~~~-~~g~~~~~~~~g~~w~~~R~~~~~~f~~~~~l~~~~-~~i~~~v-~~~~~~~---~~~--~~v~~~~~~~~~~~~  191 (490)
T PLN02302        121 -TVE-LIGRKSFVGITGEEHKRLRRLTAAPVNGPEALSTYI-PYIEENV-KSCLEKW---SKM--GEIEFLTELRKLTFK  191 (490)
T ss_pred             -HHH-HhccccccccCcHHHHHHHHHHHhccCCHHHHHHHH-HHHHHHH-HHHHHHh---cCC--CCEehHHHHHHHHHH
Confidence             122 3443 4566799999999999999995 67787775 5544444 3344444   222  369999999999999


Q ss_pred             HhhhhhcCCCCcccccCCCcchHHHHHHHHHHHHHHhhhCCCchhHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHh
Q 040199          194 SICKFSFGLDPECLMLNLPVSKFATAFDLASKLSAERALAPSPIVWKIKRLLNIGSEKQLKGAINLVNELAETMIHQRQQ  273 (502)
Q Consensus       194 ~i~~~~fG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~  273 (502)
                      ++++++||.+.+...     ..+...+.......     ...+.      .++.....+..++.+.+.+++.+.|+++++
T Consensus       192 vi~~~~~G~~~~~~~-----~~~~~~~~~~~~~~-----~~~~~------~~p~~~~~~~~~~~~~l~~~~~~~i~~~~~  255 (490)
T PLN02302        192 IIMYIFLSSESELVM-----EALEREYTTLNYGV-----RAMAI------NLPGFAYHRALKARKKLVALFQSIVDERRN  255 (490)
T ss_pred             HHHHHHcCCCChHHH-----HHHHHHHHHHHHHh-----hhCCc------CCCchhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999998754221     22222222111110     00000      111112234455677888888888888765


Q ss_pred             cC----CCCCCcHHHHHHhcc------CChHHHHHHHHHHHHhchhchHhHHHHHHHHHhcCcHHHHHHHHHHHhhcCCC
Q 040199          274 MG----FSKKNDLLSRFMASI------DDDKYLRDIVVSFLLAGRDTVASGLTSFFWLLSQHPEVESAIRNESDKIMKPN  343 (502)
Q Consensus       274 ~~----~~~~~dll~~ll~~~------~~~~~i~~~~~~~~~ag~~tt~~~l~~~l~~L~~~p~~q~~lr~Ei~~~~~~~  343 (502)
                      ..    .....|+++.+++..      .+++++.+++..+++||+|||+++++|++++|++||++|+|+++|++++++..
T Consensus       256 ~~~~~~~~~~~d~l~~ll~~~~~~~~~~~~~~i~~~~~~~~~Ag~dtta~~l~~~l~~L~~~P~~~~kl~~E~~~v~~~~  335 (490)
T PLN02302        256 SRKQNISPRKKDMLDLLLDAEDENGRKLDDEEIIDLLLMYLNAGHESSGHLTMWATIFLQEHPEVLQKAKAEQEEIAKKR  335 (490)
T ss_pred             hhhccCCCCcCCHHHHHHhhhccCCCCCCHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHhcC
Confidence            32    124579999999753      26889999999999999999999999999999999999999999999998642


Q ss_pred             ---CCCCCHHhhccChhHHHHHhhhcCCCCCCcCCccccccCcccCCCeeeCCCCEEEEcccccccCCcCcCCCCCCCCC
Q 040199          344 ---QDLVSFEQLRELHYLNAAVYESMRLFPPVQFDSKFAQEDDILPDGTFVRKGTRVTYHPYAMGRMERIWGPDCLEFKP  420 (502)
Q Consensus       344 ---~~~~~~~~l~~lp~l~a~i~E~lRl~p~~~~~~r~~~~~~~~~~g~~ipkGt~v~~~~~~~~~d~~~~g~~p~~F~P  420 (502)
                         ...++++++++||||+|||+|++|++|+++...|.+.+|.++ +||.|||||.|.++.+++||||++| +||++|+|
T Consensus       336 ~~~~~~~~~~~l~~lpyl~a~i~E~lRl~p~~~~~~R~~~~d~~~-~g~~Ip~Gt~v~~~~~~~~rd~~~~-~dP~~F~P  413 (490)
T PLN02302        336 PPGQKGLTLKDVRKMEYLSQVIDETLRLINISLTVFREAKTDVEV-NGYTIPKGWKVLAWFRQVHMDPEVY-PNPKEFDP  413 (490)
T ss_pred             CCCCCCCCHHHHhcChHHHHHHHHHHHhCCCcccchhcccCCEeE-CCEEECCCCEEEeeHHHhcCCcccC-CCccccCh
Confidence               123789999999999999999999999999888998887666 9999999999999999999999999 99999999


Q ss_pred             CcccCCCCCCCCCCCCCCCCCCCcccCccHHHHHHHHHHHHHHHhhcceEEecCCCCCCccccceeeeccCCeeEEEEEc
Q 040199          421 QRWLRNGRFVPENPFKYPVFQAGHRVCLGKDIALVEMKSVALAVVRKFNIRVSDPNQAPRFAPGLTATVRGGLPVMVQER  500 (502)
Q Consensus       421 ~Rfl~~~~~~~~~~~~~~~Fg~G~r~C~G~~~a~~~~~~~l~~ll~~f~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~r  500 (502)
                      |||++..    ..+..++|||+|+|.|+|+++|.+|+++++++++++|++++.++.....  ...+..|.++++|++++|
T Consensus       414 eR~~~~~----~~~~~~~pFG~G~r~C~G~~lA~~e~~~~la~ll~~f~~~~~~~~~~~~--~~~~~~p~~~~~~~~~~~  487 (490)
T PLN02302        414 SRWDNYT----PKAGTFLPFGLGSRLCPGNDLAKLEISIFLHHFLLGYRLERLNPGCKVM--YLPHPRPKDNCLARITKV  487 (490)
T ss_pred             hhcCCCC----CCCCCccCCCCCCcCCCcHHHHHHHHHHHHHHHHhcCeeEEcCCCCcce--eCCCCCCCCCceEEEEec
Confidence            9999643    2456789999999999999999999999999999999999976543222  222367889999999998


Q ss_pred             CC
Q 040199          501 GD  502 (502)
Q Consensus       501 ~~  502 (502)
                      .+
T Consensus       488 ~~  489 (490)
T PLN02302        488 AS  489 (490)
T ss_pred             cC
Confidence            64


No 30 
>KOG0684 consensus Cytochrome P450 [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00  E-value=4.7e-64  Score=444.53  Aligned_cols=430  Identities=20%  Similarity=0.319  Sum_probs=350.8

Q ss_pred             CcccchhhhccccchhHHHHHHHHhCCCceEEEeeeC--eEEecChhhHHHHhccCCCCCCCCchhhHhhhhccCCccc-
Q 040199           51 RSYLTFSWLKDFNNLCDWYTHLLAKSPTGTIHLHVLG--NTITSNPGNVEYILKTRFDNYPKGKPFSVILGDLLGRGIF-  127 (502)
Q Consensus        51 ~p~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~vvv~~p~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~i~-  127 (502)
                      .||+ |......+++.+++.+.++|||+ +|.+..+|  +.++.+|+....+++.....++....+.......+|+|+. 
T Consensus        40 iP~l-G~a~~fgk~P~eFl~~~~~K~Gd-VFTv~l~Gk~~Tfll~p~~~~~v~~~~~~~ld~~~~~~~l~~~vFg~~v~~  117 (486)
T KOG0684|consen   40 IPWL-GSALAFGKDPLEFLRECRKKYGD-VFTVLLMGKYMTFLLGPEGYDFVFKAKLADLDFEEAYSKLTTPVFGKGVVY  117 (486)
T ss_pred             cchh-hHHHHhccCHHHHHHHHHHhcCC-eEEEEEcCcEEEEEeCchhhHHHHcCcccccCHHHHHHHhhhhhcCCCccc
Confidence            3666 56667789999999999999996 99999888  8899999999999987656677666676777888998864 


Q ss_pred             ccCChhHHHHHhhhccccchhhHHHHHHHHHHHHHHHhHHHHHHHhccCCCCceeHHHHHHHHHHHHhhhhhcCCCCccc
Q 040199          128 NVDGDSWEFQRKMACFELGSFNIKMYALELVTAEIRSRLIPLLSSAANKDNNILDLQDVFRRFSFDSICKFSFGLDPECL  207 (502)
Q Consensus       128 ~~~g~~w~~~R~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~vdl~~~~~~~~~~~i~~~~fG~~~~~~  207 (502)
                      ..++....++.+++..++...+++++. +.+.+++.+.+...   ..+++ .+-.+...+..+.+.+.-.++||...+..
T Consensus       118 d~~~~~~~e~~~~~k~~L~~~~lk~~~-e~m~~el~~~f~~~---~~~s~-~~d~l~~~~~~ii~tAs~~ll~~e~r~~~  192 (486)
T KOG0684|consen  118 DVPNHVMMEQKKFFKSALGGVALKSLV-ELMLEELHAYFETS---LGESG-ETDGLYTFCRLIIFTASRLLLGGEVRDQL  192 (486)
T ss_pred             cCCCchHHHHHHHHHHHhchhhHHHHH-HHHHHHHHHHHhcc---ccccc-chhHhhhhhHHHhhhhHHHhhhhhhhhhh
Confidence            467788888899999999999999998 77777665555441   22233 45566777777777777777777665544


Q ss_pred             ccCCCcchHHHHHHHHHHHHHHhhhCCCchhHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcHHHHHH
Q 040199          208 MLNLPVSKFATAFDLASKLSAERALAPSPIVWKIKRLLNIGSEKQLKGAINLVNELAETMIHQRQQMGFSKKNDLLSRFM  287 (502)
Q Consensus       208 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~dll~~ll  287 (502)
                      +     .+....+.++.....       ++-+.++..+|....++..++.+.+.+.+.++|.+|++..+....|++..++
T Consensus       193 d-----~~~a~l~~dLd~~F~-------~~d~~FP~~LP~~~~r~~~ra~~~i~k~f~~~i~~rr~s~s~~~~dmlq~l~  260 (486)
T KOG0684|consen  193 D-----ADVAKLYHDLDQGFQ-------PFDFLFPYNLPIPLLRRRDRARKKISKIFSKIILDRRASISKWDNDMLQSLM  260 (486)
T ss_pred             c-----chHHHHHHHHhcccc-------chHhhcccCCCcchhhhHHHHHHHHHHHHHHHHHHHHhccccccHHHHHHHH
Confidence            3     233333333332211       1222222245556677888999999999999999999887667789999988


Q ss_pred             hcc-----CChHHHHHHHHHHHHhchhchHhHHHHHHHHHhcCcHHHHHHHHHHHhhcCCCCCCCCHHhhccChhHHHHH
Q 040199          288 ASI-----DDDKYLRDIVVSFLLAGRDTVASGLTSFFWLLSQHPEVESAIRNESDKIMKPNQDLVSFEQLRELHYLNAAV  362 (502)
Q Consensus       288 ~~~-----~~~~~i~~~~~~~~~ag~~tt~~~l~~~l~~L~~~p~~q~~lr~Ei~~~~~~~~~~~~~~~l~~lp~l~a~i  362 (502)
                      +..     .+++|+++.++.+++||+.||+.|..|++++|++|||+++.+++|+++++|.+...++.+++++||.|++||
T Consensus       261 ~~y~dg~~~te~e~a~~li~~LwA~Q~ns~ptsfW~l~yLl~~Pe~~~a~~eE~k~vlG~~~~~l~~d~L~~lplL~~~I  340 (486)
T KOG0684|consen  261 EKYKDGRPTTEEEIAGLLIGLLWAGQHNSSPTSFWTLAYLLRHPEAQKAVREEQKRVLGEKKEKLTYDQLKDLPLLDSCI  340 (486)
T ss_pred             HHhhcCCcCcHHHHHHHHHHHHHhccccccHHHHHHHHHHhhCHHHHHHHHHHHHHHhhccCCCCCHHHHhcchHHHHHH
Confidence            822     178999999999999999999999999999999999999999999999999988889999999999999999


Q ss_pred             hhhcCCCCCCcCCccccccCcccCC---CeeeCCCCEEEEcccccccCCcCcCCCCCCCCCCcccCCCCCC----CCCCC
Q 040199          363 YESMRLFPPVQFDSKFAQEDDILPD---GTFVRKGTRVTYHPYAMGRMERIWGPDCLEFKPQRWLRNGRFV----PENPF  435 (502)
Q Consensus       363 ~E~lRl~p~~~~~~r~~~~~~~~~~---g~~ipkGt~v~~~~~~~~~d~~~~g~~p~~F~P~Rfl~~~~~~----~~~~~  435 (502)
                      +|||||+||.+...|.+.+|.++.+   .|.||||..|.+++..+|+||++| +||+.|+|+||++++...    .+-.+
T Consensus       341 kEtLRL~~p~~~~~R~v~~D~tv~~~~~~Y~Ip~G~~valsP~~~hr~peif-~dp~~Fk~dRf~~~~~~~~k~g~kl~y  419 (486)
T KOG0684|consen  341 KETLRLHPPAHSLMRKVHEDLTVPGSDGEYVIPKGDIVALSPFLLHRDPEIF-PDPEDFKPDRFLKDNGESKKNGEKLDY  419 (486)
T ss_pred             HHHHhcCCchhhHHHhhccceeeccCCcceecCCCCEEEeccccccCCcccc-CChhhCChhhccCCCcccccccccccc
Confidence            9999999999999999999999866   499999999999999999999999 999999999999865433    12234


Q ss_pred             CCCCCCCCcccCccHHHHHHHHHHHHHHHhhcceEEecCCCCCCcccc-ceeeeccCCeeEEEEEcC
Q 040199          436 KYPVFQAGHRVCLGKDIALVEMKSVALAVVRKFNIRVSDPNQAPRFAP-GLTATVRGGLPVMVQERG  501 (502)
Q Consensus       436 ~~~~Fg~G~r~C~G~~~a~~~~~~~l~~ll~~f~~~~~~~~~~~~~~~-~~~~~~~~~~~v~~~~r~  501 (502)
                      .++|||+|+|.|||++||.+|++.++..+|++||+++.++ +.|..+. .++..|.++++|+-++|.
T Consensus       420 y~mpfGaGr~~CpGr~FA~~eIk~~~~l~L~~fdleLid~-~~P~~d~s~~v~~P~g~v~irYK~R~  485 (486)
T KOG0684|consen  420 YYMPFGAGRHRCPGRSFAYLEIKQFISLLLRHFDLELIDG-PFPEVDYSRMVMQPEGDVRIRYKRRP  485 (486)
T ss_pred             cccccCCCcCCCCchHHHHHHHHHHHHHHHHHcceeecCC-CCCCCCHHHhhcCCCCCceEEEeecC
Confidence            5699999999999999999999999999999999999985 3333332 457889999999999986


No 31 
>PLN02648 allene oxide synthase
Probab=100.00  E-value=4.6e-54  Score=412.05  Aligned_cols=403  Identities=13%  Similarity=0.165  Sum_probs=283.1

Q ss_pred             CCCCCCCCcccchhhh--c--cccchhHHHHHHHHhCCCceEEEeeeC--e-------EEecChhhHHHHhcc----CCC
Q 040199           44 WCQCDACRSYLTFSWL--K--DFNNLCDWYTHLLAKSPTGTIHLHVLG--N-------TITSNPGNVEYILKT----RFD  106 (502)
Q Consensus        44 ~~~~P~~~p~ig~~~~--~--~~~~~~~~~~~~~~~~~~~~~~~~~~~--~-------vvv~~p~~~~~i~~~----~~~  106 (502)
                      .||++.++|++|..+.  .  ...+...++.+..++||..+|+.+.+|  +       |+++||+.++.++.+    +..
T Consensus        18 ~PPg~~g~P~iG~~~~~~~~~~~~~~~~F~~~~~~kyG~~vfk~~l~g~p~~~~~~~~v~~~~~e~~~~v~~~~~~~~~~   97 (480)
T PLN02648         18 EIPGSYGLPFLGAIKDRLDYFYFQGEDEFFRSRVEKYKSTVFRVNMPPGPFIAPDPRVIALLDQKSFPVLFDVSKVDKRD   97 (480)
T ss_pred             CCCCCCCCcCcchhhhhhhHHHhcChHHHHHHHHHHhCCceEEecCCCCCCCCCCCCEEEEEcCCceeeeecchhccccc
Confidence            5788889999985432  2  344557899999999985488888876  4       899999999999985    323


Q ss_pred             CCCCCchhhHhhhhccCC----cccccCChhHHHHHhhhccccchhhHHHHHHHHHHHHHHHhHHHHHHHhccCCCCcee
Q 040199          107 NYPKGKPFSVILGDLLGR----GIFNVDGDSWEFQRKMACFELGSFNIKMYALELVTAEIRSRLIPLLSSAANKDNNILD  182 (502)
Q Consensus       107 ~~~~~~~~~~~~~~~~g~----~i~~~~g~~w~~~R~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~vd  182 (502)
                      .+..  .+..... ++|.    +++..+|+.|+++|+++.+.|+ ..++.+. +.+.+.+. .+.+.+.....++ .++|
T Consensus        98 ~~~~--~~~~~~~-l~G~~~~~s~~~~~g~~H~r~Rrll~~~f~-~~~~~~~-~~m~~~~~-~~~~~w~~~~~~~-~~vd  170 (480)
T PLN02648         98 VFTG--TYMPSTA-FTGGYRVLSYLDPSEPKHAKLKSFLFELLK-SRHRRFI-PEFRAAFA-ELFDTWEAELAKK-GKAE  170 (480)
T ss_pred             ccee--eeccCcc-ccCCceeeeecCCCCchHHHHHHHHHHHHH-Hhhhhhh-hHHHHHHH-HHHHHHHHHHhhC-CCcc
Confidence            3432  2233333 6663    5677889999999999999999 4677775 55555554 4555554432233 4699


Q ss_pred             HHHHHHHHHHHHhhhhhcCCCCcccccCCCcchHHHHHHHHHHHHHHhhhCCCchhHHHHH----hcccc---hHHHHHH
Q 040199          183 LQDVFRRFSFDSICKFSFGLDPECLMLNLPVSKFATAFDLASKLSAERALAPSPIVWKIKR----LLNIG---SEKQLKG  255 (502)
Q Consensus       183 l~~~~~~~~~~~i~~~~fG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~----~~~~~---~~~~~~~  255 (502)
                      +.+.+.+++++++++.+||.+.+.....   ..+...+.......... .....+...+..    ..+.+   ......+
T Consensus       171 v~~~~~~lt~~vi~~~lfG~~~~~~~l~---~~~~~~~~~~~~~~~~p-~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~~  246 (480)
T PLN02648        171 FNDPLDQMAFNFLCKALTGKDPSETALG---SDGPALIQKWLALQLAP-LASTGLPHVLEELLLHTFPLPFFLVKSDYDK  246 (480)
T ss_pred             ccchHHHHHHHHHHHHHcCCCcchhhhc---cchhHHHHHHHHHHhhH-HHHcCchHHHHHHhhcccCCchhhhhccHHH
Confidence            9999999999999999999876541111   12222222111100000 000000111111    00000   0111122


Q ss_pred             HHHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHhccCChHHHHHHHHH-HHHhchhchHhHHHHHHHHHhcCcH-HHHHHH
Q 040199          256 AINLVNELAETMIHQRQQMGFSKKNDLLSRFMASIDDDKYLRDIVVS-FLLAGRDTVASGLTSFFWLLSQHPE-VESAIR  333 (502)
Q Consensus       256 ~~~~~~~~~~~~i~~~~~~~~~~~~dll~~ll~~~~~~~~i~~~~~~-~~~ag~~tt~~~l~~~l~~L~~~p~-~q~~lr  333 (502)
                      ..+.+.+....+++               ...+...+++++.++++. +.++|++|++++++|++++|++||+ +|+||+
T Consensus       247 ~~~~~~~~~~~ll~---------------~~~~~~l~~~ei~~~~l~~~~~~t~~~~~~~l~~~l~~L~~~p~~v~~klr  311 (480)
T PLN02648        247 LYDFFRASATEALD---------------LAEKFGISREEALHNLLFVLGFNAFGGFKIFFPALLKWVGRAGEELQARLA  311 (480)
T ss_pred             HHHHHHHHHHHHHH---------------HHHhcCCCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence            22222222222222               222223478888888764 4467778888899999999999995 999999


Q ss_pred             HHHHhhcCCCCCCCCHHhhccChhHHHHHhhhcCCCCCCcCCccccccCcccC---CCeeeCCCCEEEEcccccccCCcC
Q 040199          334 NESDKIMKPNQDLVSFEQLRELHYLNAAVYESMRLFPPVQFDSKFAQEDDILP---DGTFVRKGTRVTYHPYAMGRMERI  410 (502)
Q Consensus       334 ~Ei~~~~~~~~~~~~~~~l~~lp~l~a~i~E~lRl~p~~~~~~r~~~~~~~~~---~g~~ipkGt~v~~~~~~~~~d~~~  410 (502)
                      +||+++++..++.++++++.+||||++||+|++|++|+++...|++.+|.++.   +||.||||+.|+++.+.+||||++
T Consensus       312 ~Ei~~~~~~~~~~~t~~~l~~l~yl~avi~EtLRl~p~v~~~~r~a~~d~~l~~~~~g~~IpkG~~V~~~~~~~hrdp~~  391 (480)
T PLN02648        312 EEVRSAVKAGGGGVTFAALEKMPLVKSVVYEALRIEPPVPFQYGRAREDFVIESHDAAFEIKKGEMLFGYQPLVTRDPKV  391 (480)
T ss_pred             HHHHHHhccCCCCCCHHHHhcCHHHHHHHHHHHhhcCCcccccceecCCEEEecCCceEEECCCCEEEEChHHHhCCccc
Confidence            99999987544468999999999999999999999999999999998887774   389999999999999999999999


Q ss_pred             cCCCCCCCCCCcccCCCCCCCCCCCCCCC---------CCCCcccCccHHHHHHHHHHHHHHHhhcce-EEecCCC
Q 040199          411 WGPDCLEFKPQRWLRNGRFVPENPFKYPV---------FQAGHRVCLGKDIALVEMKSVALAVVRKFN-IRVSDPN  476 (502)
Q Consensus       411 ~g~~p~~F~P~Rfl~~~~~~~~~~~~~~~---------Fg~G~r~C~G~~~a~~~~~~~l~~ll~~f~-~~~~~~~  476 (502)
                      | +||++|+|+||++++..   ....+++         ||+|+|.|+|+++|++|+++++++|+++|+ +++.++.
T Consensus       392 ~-~dP~~F~PeRf~~~~~~---~~~~~~~f~~g~~~~~~G~G~R~C~G~~~A~~e~~~~la~Ll~~f~~~~l~~~~  463 (480)
T PLN02648        392 F-DRPEEFVPDRFMGEEGE---KLLKYVFWSNGRETESPTVGNKQCAGKDFVVLVARLFVAELFLRYDSFEIEVDT  463 (480)
T ss_pred             C-CCcceeCCCCCCCCCcc---ccccccccCCCcccCCCCCCCccCccHHHHHHHHHHHHHHHHHHhCEEeecCCc
Confidence            9 99999999999864321   1123333         467889999999999999999999999998 9986654


No 32 
>COG2124 CypX Cytochrome P450 [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=100.00  E-value=1.9e-52  Score=396.57  Aligned_cols=351  Identities=26%  Similarity=0.363  Sum_probs=274.5

Q ss_pred             eEEecChhhHHHHhccCCCCCCCC---chhhHhhhhccCCc-ccccCChhHHHHHhhhccccchhhHHHHHHHHHHHHHH
Q 040199           88 NTITSNPGNVEYILKTRFDNYPKG---KPFSVILGDLLGRG-IFNVDGDSWEFQRKMACFELGSFNIKMYALELVTAEIR  163 (502)
Q Consensus        88 ~vvv~~p~~~~~i~~~~~~~~~~~---~~~~~~~~~~~g~~-i~~~~g~~w~~~R~~~~~~~~~~~l~~~~~~~~~~~~~  163 (502)
                      .+++++++.++++++++ ..+++.   ...........|.+ ++..||+.|+++||+++++|+++.++++. +.+ .+..
T Consensus        50 ~~~~s~~~~v~~v~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ll~~dg~~H~r~Rkl~~~~F~~~~~~~~~-~~i-~~~~  126 (411)
T COG2124          50 FWVVSRPADVREVLRDP-RFFSSALGAGLRPRLLRPVLGDGSLLTLDGPEHTRLRKLLAPAFTPRALRGYR-PLI-REIA  126 (411)
T ss_pred             EEEEcCHHHHHHHHcCc-ccccccccccccccchhhhccccceeecCCHHHHHHHHHhccccCHHHHHHHH-HHH-HHHH
Confidence            69999999999999986 222211   11111123445555 78899999999999999999999999995 444 4444


Q ss_pred             HhHHHHHHHhccCCCCceeHHHHHHHHHHHHhhhhhcCCCCcccccCCCcchHHHHHHHHHHHHHHhhhCCCchhHHHHH
Q 040199          164 SRLIPLLSSAANKDNNILDLQDVFRRFSFDSICKFSFGLDPECLMLNLPVSKFATAFDLASKLSAERALAPSPIVWKIKR  243 (502)
Q Consensus       164 ~~l~~~l~~~~~~~~~~vdl~~~~~~~~~~~i~~~~fG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  243 (502)
                      +.+.+.+ .   .+ +..++.+....++.++|+ .+||.+.+...      .+..........       ..      +.
T Consensus       127 ~~~~~~~-~---~~-~~~~v~~~a~~l~~~vi~-~l~Gv~~~~~~------~~~~~~~~~~~~-------~~------~~  181 (411)
T COG2124         127 DRLLDDL-W---QG-GADLVLDFAAELTLRVIA-ELLGVPLEDRP------QLLRWSDALLLR-------LD------PD  181 (411)
T ss_pred             HHHHHhc-c---cC-CchhHHHHhhhhhHHHHH-HHhCCCHHHHH------HHHHHHHHHHhc-------cC------cc
Confidence            4444444 2   22 578899999999999999 99998764321      222222211111       00      11


Q ss_pred             hcccchHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHhccC------ChHHHHHHHHHHHHhchhchHhHHHH
Q 040199          244 LLNIGSEKQLKGAINLVNELAETMIHQRQQMGFSKKNDLLSRFMASID------DDKYLRDIVVSFLLAGRDTVASGLTS  317 (502)
Q Consensus       244 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~dll~~ll~~~~------~~~~i~~~~~~~~~ag~~tt~~~l~~  317 (502)
                      ..+.....+..++.+.+.+++.++|++|+   ..+.+|+++.++...+      +++||.++++++++||+|||+++|+|
T Consensus       182 ~~~~~~~~~~~~a~~~~~~~~~~li~~rR---~~~~~dlls~l~~a~~~~~~~lsd~Ei~~~~~~ll~AGheTTa~~l~~  258 (411)
T COG2124         182 LGPEEPWRRARAARRELDAYLRALIAERR---AAPRDDLLSLLLSAEDDGGGRLSDDEIRDELITLLVAGHETTANALAW  258 (411)
T ss_pred             cCCcccHHHHHHHHHHHHHHHHHHHHHhc---cCCcccHHHHHHHHhhCCCCcCCHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence            11223356778899999999999999998   3578899999997644      68899999999999999999999999


Q ss_pred             HHHHHhcCcHHHHHHHHHHHhhcCCCCCCCCHHhhccChhHHHHHhhhcCCCCCCcCCccccccCcccCCCeeeCCCCEE
Q 040199          318 FFWLLSQHPEVESAIRNESDKIMKPNQDLVSFEQLRELHYLNAAVYESMRLFPPVQFDSKFAQEDDILPDGTFVRKGTRV  397 (502)
Q Consensus       318 ~l~~L~~~p~~q~~lr~Ei~~~~~~~~~~~~~~~l~~lp~l~a~i~E~lRl~p~~~~~~r~~~~~~~~~~g~~ipkGt~v  397 (502)
                      +++.|++||+.++++++|.+.                 ||++++++|+||++||++...|.+++|.++ +|+.||||+.|
T Consensus       259 a~~~L~~~P~~~~~l~~e~~~-----------------~~~~~~v~E~LR~~ppv~~~~R~~~~d~~i-gg~~Ip~G~~V  320 (411)
T COG2124         259 ALYALLRHPDQLAKLRAEPDR-----------------PLLEAVVEETLRLYPPVPLARRVATEDVEL-GGYRIPAGTVV  320 (411)
T ss_pred             HHHHHHHCchHHHHHHhCcch-----------------HHHHHHHHHHHHhCCchhccceeccCCEee-CCEEeCCCCEE
Confidence            999999999999999998875                 799999999999999999844555555545 99999999999


Q ss_pred             EEcccccccCCcCcCCCCCCCCCCcccCCCCCCCCCCCCCCCCCCCcccCccHHHHHHHHHHHHHHHhhcceEEecCCCC
Q 040199          398 TYHPYAMGRMERIWGPDCLEFKPQRWLRNGRFVPENPFKYPVFQAGHRVCLGKDIALVEMKSVALAVVRKFNIRVSDPNQ  477 (502)
Q Consensus       398 ~~~~~~~~~d~~~~g~~p~~F~P~Rfl~~~~~~~~~~~~~~~Fg~G~r~C~G~~~a~~~~~~~l~~ll~~f~~~~~~~~~  477 (502)
                      .++.+++||||++| ++|++|||+||.          ..++|||+|+|.|+|.+||++|++++++.++++|++....+ .
T Consensus       321 ~~~~~~anrDp~~f-~~P~~F~p~R~~----------~~~l~FG~G~H~ClG~~lA~~E~~~~l~~ll~r~~~~~~~~-~  388 (411)
T COG2124         321 LLSIGAANRDPEVF-PDPDEFDPERFN----------NAHLPFGGGPHRCLGAALARLELKVALAELLRRFPLLLLAE-P  388 (411)
T ss_pred             EecHhhhcCChhhC-CChhhcCCCCCC----------CCCcCCCCCCccccCHHHHHHHHHHHHHHHHHhCchhhcCC-C
Confidence            99999999999999 999999999985          56899999999999999999999999999999999888776 2


Q ss_pred             CCccccceeeeccCCeeEEEEEc
Q 040199          478 APRFAPGLTATVRGGLPVMVQER  500 (502)
Q Consensus       478 ~~~~~~~~~~~~~~~~~v~~~~r  500 (502)
                       .......+..+.....+.++.|
T Consensus       389 -~~~~~~~~~~~~g~~~l~v~~~  410 (411)
T COG2124         389 -PPLVRRPTLVPRGGERLPVRRR  410 (411)
T ss_pred             -CCccccccccCCCcceeeeecC
Confidence             2233344556667777777665


No 33 
>PF12554 MOZART1:  Mitotic-spindle organizing gamma-tubulin ring associated;  InterPro: IPR022214  This family of proteins is found in eukaryotes. Proteins in this family are typically between 71 and 105 amino acids in length. There is a single completely conserved residue L that may be functionally important. 
Probab=74.57  E-value=11  Score=23.26  Aligned_cols=42  Identities=17%  Similarity=0.109  Sum_probs=35.6

Q ss_pred             HHHHHHHHHHHhchhchHhHHHHHHHHHhcCcHHHHHHHHHH
Q 040199          295 YLRDIVVSFLLAGRDTVASGLTSFFWLLSQHPEVESAIRNES  336 (502)
Q Consensus       295 ~i~~~~~~~~~ag~~tt~~~l~~~l~~L~~~p~~q~~lr~Ei  336 (502)
                      ++...+..++-.|.|-.+..++-.|.+...||+....+..|+
T Consensus         6 d~l~eiS~lLntgLd~etL~ici~L~e~GVnPeaLA~vI~el   47 (48)
T PF12554_consen    6 DVLHEISDLLNTGLDRETLSICIELCENGVNPEALAAVIKEL   47 (48)
T ss_pred             HHHHHHHHHHcCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHh
Confidence            345566778888999999999999999999999998888776


No 34 
>PF12273 RCR:  Chitin synthesis regulation, resistance to Congo red;  InterPro: IPR020999  RCR proteins are ER membrane proteins that regulate chitin deposition in fungal cell walls. Although chitin, a linear polymer of beta-1,4-linked N-acetylglucosamine, constitutes only 2% of the cell wall it plays a vital role in the overall protection of the cell wall against stress, noxious chemicals and osmotic pressure changes. Congo red is a cell wall-disrupting benzidine-type dye extensively used in many cell wall mutant studies that specifically targets chitin in yeast cells and inhibits growth. RCR proteins render the yeasts resistant to Congo red by diminishing the content of chitin in the cell wall []. RCR proteins are probably regulating chitin synthase III interact directly with ubiquitin ligase Rsp5, and the VPEY motif is necessary for this, via interaction with the WW domains of Rsp5 []. 
Probab=58.73  E-value=10  Score=29.55  Aligned_cols=17  Identities=35%  Similarity=0.551  Sum_probs=6.4

Q ss_pred             HHHHHHHHHHHHHHhcC
Q 040199           26 TILFFLFSLLIFVLRLK   42 (502)
Q Consensus        26 ~~~~~~~~~~~~~~~~~   42 (502)
                      ++++++++.++.-.|++
T Consensus        11 ~i~l~~~~~~~~~rRR~   27 (130)
T PF12273_consen   11 AILLFLFLFYCHNRRRR   27 (130)
T ss_pred             HHHHHHHHHHHHHHHHh
Confidence            33333333333333333


No 35 
>PF05393 Hum_adeno_E3A:  Human adenovirus early E3A glycoprotein;  InterPro: IPR008652 This family consists of several early glycoproteins (E3A), from human adenovirus type 2.; GO: 0016021 integral to membrane
Probab=58.23  E-value=21  Score=25.00  Aligned_cols=10  Identities=10%  Similarity=0.102  Sum_probs=5.3

Q ss_pred             CCCCCCcccc
Q 040199           46 QCDACRSYLT   55 (502)
Q Consensus        46 ~~P~~~p~ig   55 (502)
                      ..|...|.||
T Consensus        62 RrPIYrPvI~   71 (94)
T PF05393_consen   62 RRPIYRPVIG   71 (94)
T ss_pred             cCCccccccc
Confidence            3444556665


No 36 
>PF07886 BA14K:  BA14K-like protein;  InterPro: IPR012413 The sequences found in this family are similar to the BA14K proteins expressed by Brucella abortus (Q44701 from SWISSPROT) and by Brucella suis (Q8FVU0 from SWISSPROT). BA14K was found to be strongly immunoreactive; it induces both humoral and cellular responses in hosts throughout the infective process []. 
Probab=54.50  E-value=10  Score=20.80  Aligned_cols=16  Identities=19%  Similarity=0.459  Sum_probs=13.0

Q ss_pred             CCCCCCCCCCCcccCc
Q 040199          433 NPFKYPVFQAGHRVCL  448 (502)
Q Consensus       433 ~~~~~~~Fg~G~r~C~  448 (502)
                      ...+|+|+++..|.|.
T Consensus        16 ~~~Ty~~~~G~r~~C~   31 (31)
T PF07886_consen   16 RDNTYQPYDGPRRFCR   31 (31)
T ss_pred             CCCcEeCCCCccccCc
Confidence            3457999999999994


No 37 
>PF08492 SRP72:  SRP72 RNA-binding domain;  InterPro: IPR013699  The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the RNA binding domain of the SRP72 subunit. This domain is responsible for the binding of SRP72 to the 7S SRP RNA []. ; GO: 0008312 7S RNA binding, 0006614 SRP-dependent cotranslational protein targeting to membrane, 0048500 signal recognition particle
Probab=53.80  E-value=9  Score=24.83  Aligned_cols=7  Identities=57%  Similarity=1.512  Sum_probs=5.2

Q ss_pred             CCCcccC
Q 040199          419 KPQRWLR  425 (502)
Q Consensus       419 ~P~Rfl~  425 (502)
                      ||||||.
T Consensus        44 DPERWLP   50 (59)
T PF08492_consen   44 DPERWLP   50 (59)
T ss_pred             CccccCc
Confidence            6788874


No 38 
>PF12508 DUF3714:  Protein of unknown function (DUF3714) ;  InterPro: IPR022187  Proteins in this entry are designated TraM and are found in a proposed transfer region of a class of conjugative transposon found in the Bacteroides lineage. 
Probab=48.71  E-value=4.6  Score=33.98  Aligned_cols=43  Identities=19%  Similarity=0.209  Sum_probs=29.5

Q ss_pred             ChhHHHHHhhhcCCCCCCcCCccccccCcccCCCeeeCCCCEEEE
Q 040199          355 LHYLNAAVYESMRLFPPVQFDSKFAQEDDILPDGTFVRKGTRVTY  399 (502)
Q Consensus       355 lp~l~a~i~E~lRl~p~~~~~~r~~~~~~~~~~g~~ipkGt~v~~  399 (502)
                      -..+.|||.|+.-+......  |-...++..++|..|||||.|..
T Consensus        52 ~n~I~A~V~~~qtv~~Gs~v--rlRLle~i~i~g~~IPkgt~l~G   94 (200)
T PF12508_consen   52 KNTIRAVVDGTQTVVDGSRV--RLRLLEDIQIGGILIPKGTYLYG   94 (200)
T ss_pred             CCeEEEEEecceEEeCCCEE--EEEEcCceEECCEEeCCCCEEEE
Confidence            45667899999877654433  33333444449999999998866


No 39 
>PF05952 ComX:  Bacillus competence pheromone ComX;  InterPro: IPR009233 Competence is the ability of a cell to take up exogenous DNA from its environment, resulting in transformation. It is widespread among bacteria and is probably an important mechanism for the horizontal transfer of genes. Cells that take up DNA inevitably acquire the nucleotides the DNA consists of, and, because nucleotides are needed for DNA and RNA synthesis and are expensive to synthesise, these may make a significant contribution to the cell's energy budget []. The lateral gene transfer caused by competence also contributes to the genetic diversity that makes evolution possible.  DNA usually becomes available by the death and lysis of other cells. Competent bacteria use components of extracellular filaments called type 4 pili to create pores in their membranes and pull DNA through the pores into the cytoplasm. This process, including the development of competence and the expression of the uptake machinery, is regulated in response to cell-cell signalling and/or nutritional conditions []. Natural genetic competence in Bacillus subtilis is controlled by quorum-sensing (QS). The ComP- ComA two-component system detects the signalling molecule ComX, and this signal is transduced by a conserved phosphotransfer mechanism. ComX is synthesised as an inactive precursor and is then cleaved and modified by ComQ before export to the extracellular environment [].
Probab=45.74  E-value=11  Score=24.26  Aligned_cols=25  Identities=20%  Similarity=0.348  Sum_probs=20.3

Q ss_pred             HHHHHHhcCcHHHHHHHHHHHhhcC
Q 040199          317 SFFWLLSQHPEVESAIRNESDKIMK  341 (502)
Q Consensus       317 ~~l~~L~~~p~~q~~lr~Ei~~~~~  341 (502)
                      -++-+|.+||++.++|.+.=...+|
T Consensus         4 ~iV~YLv~nPevl~kl~~g~asLIG   28 (57)
T PF05952_consen    4 EIVNYLVQNPEVLEKLKEGEASLIG   28 (57)
T ss_pred             HHHHHHHHChHHHHHHHcCCeeEec
Confidence            3577999999999999886666655


No 40 
>PF06084 Cytomega_TRL10:  Cytomegalovirus TRL10 protein;  InterPro: IPR009284 This family consists of several Cytomegalovirus TRL10 proteins. TRL10 represents a structural component of the virus particle and like the other HCMV envelope glycoproteins, is present in a disulphide-linked complex [].
Probab=40.33  E-value=18  Score=26.53  Aligned_cols=9  Identities=33%  Similarity=0.154  Sum_probs=6.6

Q ss_pred             ccccccccc
Q 040199            5 DYSALCLQP   13 (502)
Q Consensus         5 ~~~~~~~~~   13 (502)
                      -||+|+|..
T Consensus        56 ~ysawgags   64 (150)
T PF06084_consen   56 IYSAWGAGS   64 (150)
T ss_pred             hhhhcccch
Confidence            477787777


No 41 
>PF09201 SRX:  SRX;  InterPro: IPR015284  The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel.  This entry represents a homologue of the alpha subunit of the SR receptor. Members of this entry consist of a central six-stranded anti-parallel beta-sheet sandwiched by helix alpha1 on one side and helices alpha2-alpha4 on the other. They interact with the small GTPase SR-beta, forming a complex that matches a class of small G protein-effector complexes, including Rap-Raf, Ras-PI3K(gamma), Ras-RalGDS, and Arl2-PDE(delta) []. ; PDB: 1NRJ_A.
Probab=29.30  E-value=49  Score=25.69  Aligned_cols=23  Identities=17%  Similarity=0.413  Sum_probs=17.0

Q ss_pred             ccCccHHHHHHHHHHHHHHHhhc
Q 040199          445 RVCLGKDIALVEMKSVALAVVRK  467 (502)
Q Consensus       445 r~C~G~~~a~~~~~~~l~~ll~~  467 (502)
                      -+|.|+.+|+.++-.++.+++..
T Consensus        18 yN~~gKKFsE~QiN~FIs~lIts   40 (148)
T PF09201_consen   18 YNCLGKKFSETQINAFISHLITS   40 (148)
T ss_dssp             EETTS----HHHHHHHHHHHHHS
T ss_pred             ecccchHHHHHHHHHHHHHHhcC
Confidence            48999999999999999999864


No 42 
>TIGR03779 Bac_Flav_CT_M Bacteroides conjugative transposon TraM protein. Members of this protein family are designated TraM and are found in a proposed transfer region of a class of conjugative transposon found in the Bacteroides lineage.
Probab=28.58  E-value=12  Score=35.46  Aligned_cols=44  Identities=18%  Similarity=0.144  Sum_probs=29.4

Q ss_pred             ChhHHHHHhhhcCCCCCCcCCccccccCcccCCCeeeCCCCEEEEc
Q 040199          355 LHYLNAAVYESMRLFPPVQFDSKFAQEDDILPDGTFVRKGTRVTYH  400 (502)
Q Consensus       355 lp~l~a~i~E~lRl~p~~~~~~r~~~~~~~~~~g~~ipkGt~v~~~  400 (502)
                      -..+.|||.|+.-+.....+  |-..-++..++|..|||||.|...
T Consensus       255 ~n~I~A~V~~~qtv~~G~~v--rlRLle~~~v~~~~ipkgt~l~g~  298 (410)
T TIGR03779       255 RNTIRACVHETQTVVDGSAV--KLRLLEPIQAGDLVIPKGTVLYGT  298 (410)
T ss_pred             CCceEEEEcCceEEecCCEE--EEEEcCceeeCCEEecCCCEEEEE
Confidence            45668899998877644332  323334444499999999988664


No 43 
>COG2071 Predicted glutamine amidotransferases [General function prediction only]
Probab=28.14  E-value=35  Score=29.65  Aligned_cols=55  Identities=24%  Similarity=0.372  Sum_probs=31.9

Q ss_pred             ccChhHHHHHhhhcCCCCCCcCCccccccCc-------ccCCCeeeCCCCEEEEcccccccCCcCcCCCCCC----CCCC
Q 040199          353 RELHYLNAAVYESMRLFPPVQFDSKFAQEDD-------ILPDGTFVRKGTRVTYHPYAMGRMERIWGPDCLE----FKPQ  421 (502)
Q Consensus       353 ~~lp~l~a~i~E~lRl~p~~~~~~r~~~~~~-------~~~~g~~ipkGt~v~~~~~~~~~d~~~~g~~p~~----F~P~  421 (502)
                      ....|++|+++ +    ...|...+ ...|.       ..++|..++-|.         +-||..||++|.+    |+|+
T Consensus        27 ~~~~yv~ai~~-a----Gg~pillP-~~~d~~~~~~~l~~iDgliltGg~---------nV~P~~YGee~~~~~~~~~p~   91 (243)
T COG2071          27 LPYDYVDAIIK-A----GGIPILLP-ALEDPEDARQYLDLIDGLILTGGS---------NVDPSLYGEEPSEKDGPYDPE   91 (243)
T ss_pred             HHHHHHHHHHH-c----CCceEEec-CCCCHHHHHHHHhhccEEEecCCC---------cCCHHHcCCCCCcccCCCCcc
Confidence            34578888887 2    34444444 11111       123566666665         4488888887744    7788


Q ss_pred             c
Q 040199          422 R  422 (502)
Q Consensus       422 R  422 (502)
                      |
T Consensus        92 R   92 (243)
T COG2071          92 R   92 (243)
T ss_pred             c
Confidence            8


No 44 
>PF07849 DUF1641:  Protein of unknown function (DUF1641);  InterPro: IPR012440 Archaeal and bacterial hypothetical proteins are found in this family, with the region in question being approximately 40 residues long. 
Probab=28.06  E-value=67  Score=19.14  Aligned_cols=19  Identities=11%  Similarity=0.029  Sum_probs=15.0

Q ss_pred             HHHHHHHHhcCcHHHHHHH
Q 040199          315 LTSFFWLLSQHPEVESAIR  333 (502)
Q Consensus       315 l~~~l~~L~~~p~~q~~lr  333 (502)
                      --|-++-++++||+|.-|.
T Consensus        12 gl~gl~~~l~DpdvqrgL~   30 (42)
T PF07849_consen   12 GLFGLLRALRDPDVQRGLG   30 (42)
T ss_pred             CHHHHHHHHcCHHHHHHHH
Confidence            3467788899999998765


No 45 
>PF13993 YccJ:  YccJ-like protein
Probab=27.63  E-value=93  Score=20.15  Aligned_cols=31  Identities=19%  Similarity=0.231  Sum_probs=23.3

Q ss_pred             HhchhchHhHHHHHHHHHhcCcHH-HHHHHHH
Q 040199          305 LAGRDTVASGLTSFFWLLSQHPEV-ESAIRNE  335 (502)
Q Consensus       305 ~ag~~tt~~~l~~~l~~L~~~p~~-q~~lr~E  335 (502)
                      +|..-.||.-+.-++++|+.+.+. .+++.+|
T Consensus         8 WA~~ReTS~EIAeAIFElA~~dE~lAekIWee   39 (69)
T PF13993_consen    8 WANVRETSIEIAEAIFELANNDEVLAEKIWEE   39 (69)
T ss_pred             HHHHhcCCHHHHHHHHHHhcccHHHHHHHHHc
Confidence            566677888999999999998774 3455543


No 46 
>PF12444 Sox_N:  Sox developmental protein N terminal ;  InterPro: IPR022151  This domain family is found in eukaryotes, and is typically between 69 and 88 amino acids in length. The family is found in association with PF00505 from PFAM. There are two conserved sequence motifs: YDW and PVR. This family contains Sox8, Sox9 and Sox10 proteins which have structural similarity. Sox proteins are involved in developmental processes. 
Probab=25.64  E-value=52  Score=23.24  Aligned_cols=19  Identities=5%  Similarity=0.226  Sum_probs=16.7

Q ss_pred             HHHHHHHHHhhcceEEecC
Q 040199          456 EMKSVALAVVRKFNIRVSD  474 (502)
Q Consensus       456 ~~~~~l~~ll~~f~~~~~~  474 (502)
                      .|+-++..+|+-|||.|++
T Consensus        61 ~IrdAVsqVLkGYDWtLVP   79 (84)
T PF12444_consen   61 CIRDAVSQVLKGYDWTLVP   79 (84)
T ss_pred             HHHHHHHHHhccCCceeee
Confidence            4677999999999999976


No 47 
>PF05393 Hum_adeno_E3A:  Human adenovirus early E3A glycoprotein;  InterPro: IPR008652 This family consists of several early glycoproteins (E3A), from human adenovirus type 2.; GO: 0016021 integral to membrane
Probab=25.30  E-value=2.3e+02  Score=20.11  Aligned_cols=16  Identities=13%  Similarity=0.098  Sum_probs=8.5

Q ss_pred             HHHHHHHHHHHHHHhc
Q 040199           26 TILFFLFSLLIFVLRL   41 (502)
Q Consensus        26 ~~~~~~~~~~~~~~~~   41 (502)
                      +++++++++++...++
T Consensus        45 il~VilwfvCC~kRkr   60 (94)
T PF05393_consen   45 ILLVILWFVCCKKRKR   60 (94)
T ss_pred             HHHHHHHHHHHHHhhh
Confidence            4445555555555444


No 48 
>PF12273 RCR:  Chitin synthesis regulation, resistance to Congo red;  InterPro: IPR020999  RCR proteins are ER membrane proteins that regulate chitin deposition in fungal cell walls. Although chitin, a linear polymer of beta-1,4-linked N-acetylglucosamine, constitutes only 2% of the cell wall it plays a vital role in the overall protection of the cell wall against stress, noxious chemicals and osmotic pressure changes. Congo red is a cell wall-disrupting benzidine-type dye extensively used in many cell wall mutant studies that specifically targets chitin in yeast cells and inhibits growth. RCR proteins render the yeasts resistant to Congo red by diminishing the content of chitin in the cell wall []. RCR proteins are probably regulating chitin synthase III interact directly with ubiquitin ligase Rsp5, and the VPEY motif is necessary for this, via interaction with the WW domains of Rsp5 []. 
Probab=23.23  E-value=71  Score=24.88  Aligned_cols=19  Identities=21%  Similarity=0.291  Sum_probs=7.6

Q ss_pred             HHHHHHHHHHHHHhcCCCC
Q 040199           27 ILFFLFSLLIFVLRLKPWC   45 (502)
Q Consensus        27 ~~~~~~~~~~~~~~~~~~~   45 (502)
                      ++++++++++..++.++..
T Consensus         9 i~~i~l~~~~~~~~~rRR~   27 (130)
T PF12273_consen    9 IVAILLFLFLFYCHNRRRR   27 (130)
T ss_pred             HHHHHHHHHHHHHHHHHHh
Confidence            3333333333344444343


No 49 
>PRK13713 conjugal transfer protein TraM; Provisional
Probab=22.61  E-value=3.5e+02  Score=20.55  Aligned_cols=30  Identities=23%  Similarity=0.377  Sum_probs=17.4

Q ss_pred             HHHHHHHHHHHHHhcCCCCCC----cHHHHHHhc
Q 040199          260 VNELAETMIHQRQQMGFSKKN----DLLSRFMAS  289 (502)
Q Consensus       260 ~~~~~~~~i~~~~~~~~~~~~----dll~~ll~~  289 (502)
                      ..+-+..++++|++.|..+.+    +..+.|++.
T Consensus         5 v~e~I~~iVe~RrqEGA~~~Dvs~SSv~sMLLEL   38 (118)
T PRK13713          5 VYEKINAIVEERRQEGAREKDVSFSSVASMLLEL   38 (118)
T ss_pred             HHHHHHHHHHHHHHcCCCccCccHHHHHHHHHHH
Confidence            345566778888877654333    445555543


No 50 
>KOG3506 consensus 40S ribosomal protein S29 [Translation, ribosomal structure and biogenesis]
Probab=22.35  E-value=40  Score=21.23  Aligned_cols=10  Identities=40%  Similarity=0.783  Sum_probs=8.5

Q ss_pred             CCCCCcccCc
Q 040199          439 VFQAGHRVCL  448 (502)
Q Consensus       439 ~Fg~G~r~C~  448 (502)
                      +||-|.|.|-
T Consensus        13 kfg~GsrsC~   22 (56)
T KOG3506|consen   13 KFGQGSRSCR   22 (56)
T ss_pred             ccCCCCccee
Confidence            7999999884


No 51 
>PF14483 Cut8_M:  Cut8 dimerisation domain; PDB: 3Q5W_A 3Q5X_A.
Probab=21.86  E-value=1.3e+02  Score=17.48  Aligned_cols=20  Identities=40%  Similarity=0.713  Sum_probs=13.0

Q ss_pred             HHHHHHHHh-cCcHHHHHHHH
Q 040199          315 LTSFFWLLS-QHPEVESAIRN  334 (502)
Q Consensus       315 l~~~l~~L~-~~p~~q~~lr~  334 (502)
                      +...+..++ +||++++.++.
T Consensus        15 L~~lL~~l~~~HPei~~~i~~   35 (38)
T PF14483_consen   15 LQSLLQSLCERHPEIQQEIRS   35 (38)
T ss_dssp             HHHHHHHHHHHSTHHHHHHHT
T ss_pred             HHHHHHHHHHhChhHHHHHHh
Confidence            334444555 69999888764


No 52 
>PF08780 NTase_sub_bind:  Nucleotidyltransferase substrate binding protein like;  InterPro: IPR010235 The member of this family from Haemophilus influenzae, HI0074, has been shown by crystal structure to resemble nucleotidyltransferase substrate binding proteins []. It forms a complex with HI0073 (P43933 from SWISSPROT), encoded by the adjacent gene, which contains a nucleotidyltransferase nucleotide binding domain (IPR002934 from INTERPRO). Double- and single-stranded DNA binding assays showed no evidence of DNA binding to HI0074 or to HI0073/HI0074 complex despite the suggestive shape of the putative binding cleft formed by the HI0074 dimer []. ; PDB: 1WWP_A 1JOG_A 1WTY_C 2YWA_B.
Probab=21.63  E-value=3.5e+02  Score=20.83  Aligned_cols=36  Identities=14%  Similarity=0.325  Sum_probs=22.4

Q ss_pred             hhhhccCCcccccCChhHHHH---HhhhccccchhhHHHH
Q 040199          117 ILGDLLGRGIFNVDGDSWEFQ---RKMACFELGSFNIKMY  153 (502)
Q Consensus       117 ~~~~~~g~~i~~~~g~~w~~~---R~~~~~~~~~~~l~~~  153 (502)
                      .+...+..|++ .|++.|.++   |-..++.+........
T Consensus        65 ~~r~A~~~glI-~d~e~Wl~m~~~RN~tsHtYde~~a~~i  103 (124)
T PF08780_consen   65 VFREAFKAGLI-DDGEIWLDMLEDRNLTSHTYDEETAEEI  103 (124)
T ss_dssp             HHHHHHHTTSS-SHHHHHHHHHHHHHHGGGTTSHHHHHHH
T ss_pred             HHHHHHHcCCC-CCHHHHHHHHHHhccccCCCCHHHHHHH
Confidence            33344445666 678889766   4577787876554443


No 53 
>PRK13467 F0F1 ATP synthase subunit C; Provisional
Probab=21.44  E-value=1.4e+02  Score=20.00  Aligned_cols=25  Identities=16%  Similarity=0.236  Sum_probs=19.9

Q ss_pred             hHhHHHHHHHHHhcCcHHHHHHHHH
Q 040199          311 VASGLTSFFWLLSQHPEVESAIRNE  335 (502)
Q Consensus       311 t~~~l~~~l~~L~~~p~~q~~lr~E  335 (502)
                      .....+-++--++++||.+.+++.-
T Consensus        19 ~G~v~~~a~e~iaRqPE~~~~i~~~   43 (66)
T PRK13467         19 EGFLMANLFKSAARQPEMIGQLRSL   43 (66)
T ss_pred             HHHHHHHHHHHHHcChhHHHhHHHH
Confidence            3456677888899999999998763


No 54 
>PF05568 ASFV_J13L:  African swine fever virus J13L protein;  InterPro: IPR008385 This family consists of several African swine fever virus (ASFV) j13L proteins [, , ].
Probab=20.58  E-value=1.7e+02  Score=22.90  Aligned_cols=19  Identities=16%  Similarity=0.574  Sum_probs=7.9

Q ss_pred             HHHHHHHHHHHHHHHHHHH
Q 040199           20 FMFFTFTILFFLFSLLIFV   38 (502)
Q Consensus        20 ~~l~~~~~~~~~~~~~~~~   38 (502)
                      .+++.+.++++++.++.|+
T Consensus        33 tILiaIvVliiiiivli~l   51 (189)
T PF05568_consen   33 TILIAIVVLIIIIIVLIYL   51 (189)
T ss_pred             HHHHHHHHHHHHHHHHHHH
Confidence            3444444444444444444


No 55 
>PF11808 DUF3329:  Domain of unknown function (DUF3329);  InterPro: IPR021766  This family of proteins are functionally uncharacterised. This family is only found in bacteria. ; GO: 0004673 protein histidine kinase activity
Probab=20.42  E-value=3.3e+02  Score=19.49  Aligned_cols=24  Identities=13%  Similarity=-0.009  Sum_probs=13.7

Q ss_pred             CcccchhhhccccchhHHHHHHHH
Q 040199           51 RSYLTFSWLKDFNNLCDWYTHLLA   74 (502)
Q Consensus        51 ~p~ig~~~~~~~~~~~~~~~~~~~   74 (502)
                      +|--.|.+...+..+++.-.+-.+
T Consensus        63 pP~~~G~W~~if~~Lyr~qrr~r~   86 (90)
T PF11808_consen   63 PPEGSGIWGEIFDRLYRLQRRNRK   86 (90)
T ss_pred             CCCCCCcHHHHHHHHHHHHHHHHH
Confidence            344446777766666665554443


No 56 
>PF08285 DPM3:  Dolichol-phosphate mannosyltransferase subunit 3 (DPM3);  InterPro: IPR013174 This family corresponds to subunit 3 of dolichol-phosphate mannosyltransferase, an enzyme which generates mannosyl donors for glycosylphosphatidylinositols, N-glycan and protein O- and C-mannosylation. DPM3 is an integral membrane protein and plays a role in stabilising the dolichol-phosphate mannosyl transferase complex [].
Probab=20.20  E-value=1.4e+02  Score=21.51  Aligned_cols=28  Identities=14%  Similarity=0.093  Sum_probs=23.2

Q ss_pred             HhHHHHHHHHHhcCcHHHHHHHHHHHhh
Q 040199          312 ASGLTSFFWLLSQHPEVESAIRNESDKI  339 (502)
Q Consensus       312 ~~~l~~~l~~L~~~p~~q~~lr~Ei~~~  339 (502)
                      ..++.|.++..-..||..+.|++||+++
T Consensus        53 l~~lgy~v~tFnDcpeA~~eL~~eI~eA   80 (91)
T PF08285_consen   53 LFTLGYGVATFNDCPEAAKELQKEIKEA   80 (91)
T ss_pred             HHHHHHhhhccCCCHHHHHHHHHHHHHH
Confidence            4456777777778899999999999987


No 57 
>PHA00728 hypothetical protein
Probab=20.13  E-value=56  Score=24.38  Aligned_cols=27  Identities=15%  Similarity=0.256  Sum_probs=18.7

Q ss_pred             eeeCCCCEEEEc---------ccccccCCcCcCCCC
Q 040199          389 TFVRKGTRVTYH---------PYAMGRMERIWGPDC  415 (502)
Q Consensus       389 ~~ipkGt~v~~~---------~~~~~~d~~~~g~~p  415 (502)
                      .+-||+|+...+         .+...|-|.+||+.|
T Consensus        56 lV~PkDTMfYLsgnqisLILtAfEfarLP~YFgEeP   91 (151)
T PHA00728         56 LVEPKDTMFYLSGNQISLILTAFEFARLPAYFGEEP   91 (151)
T ss_pred             hcCCccceEEecCCchhhHHHHHHHhhchhhhCCcc
Confidence            344666665544         556678999999887


Done!