BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 040200
(132 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1HYP|A Chain A, Crystal Structure Of Hydrophobic Protein From Soybean; A
Member Of A New Cystine-Rich Family
Length = 80
Score = 32.3 bits (72), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 46/90 (51%), Gaps = 18/90 (20%)
Query: 35 QPACSDNFLELDVCVDVLEALSRHLAPPSKNYCCSLIGNLVELEAMGTCLCTALE-VNVL 93
+P+C D L +C+++L + + + CC+LIG L ++EA+ CLC L + +L
Sbjct: 5 RPSCPD----LSICLNILGG-----SLGTVDDCCALIGGLGDIEAI-VCLCIQLRALGIL 54
Query: 94 DVIKQETIPSASLSLLWEYCESEIPSDFQC 123
++ + +L L+ C PS+ C
Sbjct: 55 NLNR-------NLQLILNSCGRSYPSNATC 77
>pdb|3PS0|A Chain A, The Structure Of The Crispr-Associated Protein, Csa2, From
Sulfolobus Solfataricus
pdb|3PS0|B Chain B, The Structure Of The Crispr-Associated Protein, Csa2, From
Sulfolobus Solfataricus
pdb|3PS0|C Chain C, The Structure Of The Crispr-Associated Protein, Csa2, From
Sulfolobus Solfataricus
pdb|3PS0|D Chain D, The Structure Of The Crispr-Associated Protein, Csa2, From
Sulfolobus Solfataricus
Length = 328
Score = 29.6 bits (65), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 11/34 (32%), Positives = 21/34 (61%)
Query: 81 GTCLCTALEVNVLDVIKQETIPSASLSLLWEYCE 114
G L A + +++D+ K+E +P SLS +E+ +
Sbjct: 57 GEALAHAYQASLVDIAKKEGLPVGSLSSQYEFIK 90
>pdb|3RG9|A Chain A, Trypanosoma Brucei Dihydrofolate Reductase (Tbdhfr) In
Complex With Wr99210
pdb|3RG9|B Chain B, Trypanosoma Brucei Dihydrofolate Reductase (Tbdhfr) In
Complex With Wr99210
Length = 240
Score = 28.5 bits (62), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 19/73 (26%), Positives = 36/73 (49%), Gaps = 6/73 (8%)
Query: 48 CVDVLEALSRHLAPPSKNYCCSLIGNLVELEAMGTCLCTALEVNVLDVIKQETIPSASLS 107
CV+VL+A+ R + P+ N C ++ A GT LE+ V + I E + + +
Sbjct: 174 CVNVLQAIHRTVVRPASNSCSVFF----DIPAAGTKTPEGLEL-VRESITDERVSTGAGG 228
Query: 108 LLWEYCESEIPSD 120
+++ E +P +
Sbjct: 229 KKYQF-EKLVPRN 240
>pdb|3QFX|A Chain A, Trypanosoma Brucei Dihydrofolate Reductase Pyrimethamine
Complex
pdb|3QFX|B Chain B, Trypanosoma Brucei Dihydrofolate Reductase Pyrimethamine
Complex
Length = 241
Score = 28.1 bits (61), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 19/73 (26%), Positives = 36/73 (49%), Gaps = 6/73 (8%)
Query: 48 CVDVLEALSRHLAPPSKNYCCSLIGNLVELEAMGTCLCTALEVNVLDVIKQETIPSASLS 107
CV+VL+A+ R + P+ N C ++ A GT LE+ V + I E + + +
Sbjct: 174 CVNVLQAIHRTVVRPASNSCSVFF----DIPAAGTKTPEGLEL-VRESITDERVSTGAGG 228
Query: 108 LLWEYCESEIPSD 120
+++ E +P +
Sbjct: 229 KKYQF-EKLVPRN 240
>pdb|3B5Q|A Chain A, Crystal Structure Of A Putative Sulfatase (Np_810509.1)
From Bacteroides Thetaiotaomicron Vpi-5482 At 2.40 A
Resolution
pdb|3B5Q|B Chain B, Crystal Structure Of A Putative Sulfatase (Np_810509.1)
From Bacteroides Thetaiotaomicron Vpi-5482 At 2.40 A
Resolution
Length = 482
Score = 27.7 bits (60), Expect = 1.8, Method: Composition-based stats.
Identities = 13/40 (32%), Positives = 21/40 (52%), Gaps = 3/40 (7%)
Query: 29 PSSAEEQPACSDNFLELDVCVDVLEALSRHLAPPSKNYCC 68
P + E P +D+FL++ C D + LS PP + + C
Sbjct: 137 PFTDPEFPVNNDSFLDVGTCEDAVAYLSN---PPKEPFIC 173
>pdb|3HG7|A Chain A, Crystal Structure Of D-Isomer Specific 2-Hydroxyacid
Dehydrogenase Family Protein From Aeromonas Salmonicida
Subsp. Salmonicida A449
Length = 324
Score = 26.9 bits (58), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 36/81 (44%), Gaps = 11/81 (13%)
Query: 36 PACSDNFLELDVCVDVLEAL--SRHLAPPSKNYCCS--------LIGNLVELEAMGTCLC 85
PA + + DV V VL A + HL S+ C GN + + T L
Sbjct: 186 PALNKMLAQADVIVSVLPATRETHHLFTASRFEHCKPGAILFNVGRGNAINEGDLLTALR 245
Query: 86 TA-LEVNVLDVIKQETIPSAS 105
T L + VLDV +QE +P+ S
Sbjct: 246 TGKLGMAVLDVFEQEPLPADS 266
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.134 0.408
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,141,746
Number of Sequences: 62578
Number of extensions: 100645
Number of successful extensions: 217
Number of sequences better than 100.0: 7
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 215
Number of HSP's gapped (non-prelim): 7
length of query: 132
length of database: 14,973,337
effective HSP length: 88
effective length of query: 44
effective length of database: 9,466,473
effective search space: 416524812
effective search space used: 416524812
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 46 (22.3 bits)