Query 040200
Match_columns 132
No_of_seqs 106 out of 296
Neff 4.1
Searched_HMMs 29240
Date Mon Mar 25 09:23:40 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040200.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/040200hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1hyp_A Hydrophobic protein fro 100.0 1.4E-30 4.8E-35 182.3 1.0 75 35-125 5-79 (80)
2 1n89_A Lipid transfer protein; 96.1 0.0024 8.1E-08 41.8 1.8 60 44-118 6-65 (67)
3 2rkn_A DIR1 protein, AT5G48485 95.6 0.0049 1.7E-07 40.9 1.8 70 36-119 3-75 (77)
4 1l6h_A LTP2, non-specific lipi 94.8 0.0025 8.4E-08 42.0 -1.4 61 43-118 6-66 (69)
5 2alg_A Non-specific lipid tran 92.9 0.0097 3.3E-07 40.9 -1.5 69 38-119 4-80 (92)
6 1siy_A LTP 1, NS-LTP1, nonspec 92.0 0.065 2.2E-06 36.6 1.9 72 37-119 2-79 (91)
7 1bwo_A NS-LTP1, nonspecific li 87.0 0.069 2.4E-06 36.5 -1.2 67 42-119 7-79 (90)
8 1afh_A Maize nonspecific lipid 86.5 0.095 3.3E-06 35.9 -0.7 71 38-118 4-80 (93)
9 2ljo_A Non-specific lipid-tran 86.0 0.18 6.2E-06 34.9 0.5 76 42-125 8-90 (93)
10 1t12_A LTP 1, nonspecific lipi 81.7 0.28 9.7E-06 33.5 -0.0 69 38-118 4-78 (91)
No 1
>1hyp_A Hydrophobic protein from soybean; hydrophobic SEED protein; 1.80A {Glycine max} SCOP: a.52.1.1
Probab=99.96 E-value=1.4e-30 Score=182.34 Aligned_cols=75 Identities=33% Similarity=0.810 Sum_probs=66.2
Q ss_pred CCCCCccccchhHHHhHHHHhhhhcCCCCCCccccccccccccccchhhhhHhhhcccccccccCCCCcchHHHHHHHhC
Q 040200 35 QPACSDNFLELDVCVDVLEALSRHLAPPSKNYCCSLIGNLVELEAMGTCLCTALEVNVLDVIKQETIPSASLSLLWEYCE 114 (132)
Q Consensus 35 ~~~CP~d~lkL~vCanVL~l~~~~lg~p~~~~CCsli~gL~dldA~avCLCtAikanvLgI~~l~~ip~v~l~llln~CG 114 (132)
+++|| |||+|+||||. .+| +.++|||+|+||+|+|| |+|||||+|+ ||| + |+| +++++|+|+||
T Consensus 5 ~~~CP----kLgvCanvL~g---~~~--~~~~CC~Ll~GL~dleA-AvCLCtaik~--Lgi--l-nlp-v~L~llln~Cg 68 (80)
T 1hyp_A 5 RPSCP----DLSICLNILGG---SLG--TVDDCCALIGGLGDIEA-IVCLCIQLRA--LGI--L-NLN-RNLQLILNSCG 68 (80)
T ss_dssp -CCSC----CCGGGGGGGGT---CCT--THHHHHHHHHTSCHHHH-HHHHHHHHHH--HTC--S-CHH-HHHHHHHHHTT
T ss_pred CCCCC----chhHHHHHhCc---CCC--CCCccchhhhCcchhhh-hhhhhhhccc--cce--e-ecC-hhHHHHHHHhC
Confidence 47899 89999999962 122 66899999999999999 9999999995 897 5 889 99999999999
Q ss_pred CCCCCCcccCC
Q 040200 115 SEIPSDFQCIN 125 (132)
Q Consensus 115 k~~P~gF~C~~ 125 (132)
|++|+||+|+.
T Consensus 69 k~~P~gF~C~~ 79 (80)
T 1hyp_A 69 RSYPSNATCPR 79 (80)
T ss_dssp CSSCCCCCCSC
T ss_pred CcCcCCCCCCC
Confidence 99999999984
No 2
>1n89_A Lipid transfer protein; lipid transport; HET: PGM; NMR {Triticum turgidum subsp} SCOP: a.52.1.1 PDB: 1tuk_A*
Probab=96.07 E-value=0.0024 Score=41.82 Aligned_cols=60 Identities=17% Similarity=0.372 Sum_probs=44.2
Q ss_pred chhHHHhHHHHhhhhcCCCCCCccccccccccccccchhhhhHhhhcccccccccCCCCcchHHHHHHHhCCCCC
Q 040200 44 ELDVCVDVLEALSRHLAPPSKNYCCSLIGNLVELEAMGTCLCTALEVNVLDVIKQETIPSASLSLLWEYCESEIP 118 (132)
Q Consensus 44 kL~vCanVL~l~~~~lg~p~~~~CCsli~gL~dldA~avCLCtAikanvLgI~~l~~ip~v~l~llln~CGk~~P 118 (132)
+|..|...+ .-|.+|..+||+-+++ . ..|+|..+|...++. .| |.+ ...-|...||..+|
T Consensus 6 ~L~pC~~~v-----~~~~~Ps~~CC~~lk~-----~-~~ClC~~~k~~~~~~-~i-n~~--~A~~Lp~~Cgv~~P 65 (67)
T 1n89_A 6 QLAVCASAI-----LSGAKPSGECCGNLRA-----Q-QGCFCQYAKDPTYGQ-YI-RSP--HARDTLTSCGLAVP 65 (67)
T ss_dssp TTHHHHHHH-----TTCCCCCHHHHHHHHH-----H-SSHHHHGGGCSTTHH-HH-TCH--HHHHHHHHHTSCCS
T ss_pred hcccCHHHH-----cCCCCCCHHHHHhhCC-----C-CCCCCccccCccccc-cc-CHH--HHHHHHHHcCCCCC
Confidence 678898876 2355677889999985 4 679999998766653 34 554 44557789999988
No 3
>2rkn_A DIR1 protein, AT5G48485; LTP, defense signaling protein, signaling protein, lipid TRA; HET: LP3; 1.60A {Arabidopsis thaliana}
Probab=95.59 E-value=0.0049 Score=40.93 Aligned_cols=70 Identities=19% Similarity=0.348 Sum_probs=48.0
Q ss_pred CCCCccccchhHHHhHHHHhhhhcCCCCCCccccccccccccccchhhhhHhhh---cccccccccCCCCcchHHHHHHH
Q 040200 36 PACSDNFLELDVCVDVLEALSRHLAPPSKNYCCSLIGNLVELEAMGTCLCTALE---VNVLDVIKQETIPSASLSLLWEY 112 (132)
Q Consensus 36 ~~CP~d~lkL~vCanVL~l~~~~lg~p~~~~CCsli~gL~dldA~avCLCtAik---anvLgI~~l~~ip~v~l~llln~ 112 (132)
..|-.+..+|..|...+. ..-+.+|...||+-+++ +| ..|||..++ +.-+|| |.+ ...-|-..
T Consensus 3 ~~C~~~~~~L~pC~~yv~---~~~~~~Ps~~CC~~lk~-~~----~~ClC~~~~~~~~~~~gi----n~~--~A~~LP~~ 68 (77)
T 2rkn_A 3 DLCGMSQDELNECKPAVS---KENPTSPSQPCCTALQH-AD----FACLCGYKNSPWLGSFGV----DPE--LASALPKQ 68 (77)
T ss_dssp CBTTBCHHHHHHHGGGGB---SSSCCCCCHHHHHHHTT-CC----HHHHHTTTTCHHHHHHTB----CHH--HHHHHHHH
T ss_pred chHHhHHHhHhhCHHHHc---CCCCCCCCHHHHHHHHh-cC----cCCcCcccCCcchhhcCc----CHH--HHHHHHHH
Confidence 568788888989988751 00014567789999998 23 379999888 443455 433 44557789
Q ss_pred hCCCCCC
Q 040200 113 CESEIPS 119 (132)
Q Consensus 113 CGk~~P~ 119 (132)
||..+|.
T Consensus 69 Cgv~~p~ 75 (77)
T 2rkn_A 69 CGLANAP 75 (77)
T ss_dssp TTCSCCC
T ss_pred cCCCCCC
Confidence 9999864
No 4
>1l6h_A LTP2, non-specific lipid transfer protein; NSLTP2, plant LTP, lipid transport; NMR {Oryza sativa} SCOP: a.52.1.1
Probab=94.84 E-value=0.0025 Score=41.96 Aligned_cols=61 Identities=18% Similarity=0.341 Sum_probs=43.3
Q ss_pred cchhHHHhHHHHhhhhcCCCCCCccccccccccccccchhhhhHhhhcccccccccCCCCcchHHHHHHHhCCCCC
Q 040200 43 LELDVCVDVLEALSRHLAPPSKNYCCSLIGNLVELEAMGTCLCTALEVNVLDVIKQETIPSASLSLLWEYCESEIP 118 (132)
Q Consensus 43 lkL~vCanVL~l~~~~lg~p~~~~CCsli~gL~dldA~avCLCtAikanvLgI~~l~~ip~v~l~llln~CGk~~P 118 (132)
-+|..|...+ .-|.+|..+||+-+++ . ..|+|..+|...++. .| |.+ .+. -|...||..+|
T Consensus 6 ~~L~pC~~~v-----~~~~~Ps~~CC~~lk~-----~-~~ClC~~~k~~~~~~-~i-n~~-~A~-~Lp~~Cgv~~P 66 (69)
T 1l6h_A 6 GQLTVCTGAI-----AGGARPTAACCSSLRA-----Q-QGCFCQFAKDPRYGR-YV-NSP-NAR-KAVSSCGIALP 66 (69)
T ss_dssp TTHHHHHHHH-----TTCCSTTHHHHHHHHH-----H-HHHHHHHTTCSSHHH-HT-TTT-TGG-GCCCCCSSCSC
T ss_pred hhcccCHHHH-----cCCCCCCHHHHHhhCC-----C-CCCCCccccCccccc-cc-CHH-HHH-HHHHHcCCCCC
Confidence 3678898886 2255677889999985 4 789999998765653 34 554 333 36678999887
No 5
>2alg_A Non-specific lipid transfer protein; LTP, NS-LTP, FOOD allergen, lipid transport; HET: DAO P6G; 2.30A {Prunus persica} PDB: 2b5s_A*
Probab=92.88 E-value=0.0097 Score=40.92 Aligned_cols=69 Identities=22% Similarity=0.355 Sum_probs=45.9
Q ss_pred CCccccchhHHHhHHHHhhhhcCCCCCCcccccccccc-------ccccchhhhhHhhhcccc-cccccCCCCcchHHHH
Q 040200 38 CSDNFLELDVCVDVLEALSRHLAPPSKNYCCSLIGNLV-------ELEAMGTCLCTALEVNVL-DVIKQETIPSASLSLL 109 (132)
Q Consensus 38 CP~d~lkL~vCanVL~l~~~~lg~p~~~~CCsli~gL~-------dldA~avCLCtAikanvL-gI~~l~~ip~v~l~ll 109 (132)
|.....+|.-|.+.+. -|.++..+||+-+++|. |-++ .|+|...++.-+ || |.+ ....|
T Consensus 4 C~~v~~~L~pCl~y~~-----~~~~p~~~CC~~lk~l~~~a~t~~d~~~--~ClC~~~~~~~~~~i----n~~--~A~~L 70 (92)
T 2alg_A 4 CGQVSSSLAPCIPYVR-----GGGAVPPACCNGIRNVNNLARTTPDRQA--ACNCLKQLSASVPGV----NPN--NAAAL 70 (92)
T ss_dssp HHHHHHHHGGGHHHHH-----HCSCCCHHHHHHHHHHHHHCCSHHHHHH--HHHHHHHHHHHSTTC----CHH--HHHHH
T ss_pred hHHHHHhccCcHHHHc-----CCCCCCHHHHHHHHHHHhhhcccCCCCc--CCccccCcccccCcc----ChH--HHHHH
Confidence 3333446777888762 13345568999999987 4333 799987666656 55 433 44557
Q ss_pred HHHhCCCCCC
Q 040200 110 WEYCESEIPS 119 (132)
Q Consensus 110 ln~CGk~~P~ 119 (132)
-..||-.+|-
T Consensus 71 P~~Cgv~~p~ 80 (92)
T 2alg_A 71 PGKCGVSIPY 80 (92)
T ss_dssp HHHTTCCCSS
T ss_pred HHHcCCCCCC
Confidence 7899998763
No 6
>1siy_A LTP 1, NS-LTP1, nonspecific lipid-transfer protein 1; alpha helix, lipid binding protein; NMR {Vigna radiata var}
Probab=92.04 E-value=0.065 Score=36.64 Aligned_cols=72 Identities=18% Similarity=0.391 Sum_probs=46.0
Q ss_pred CCCccccchhHHHhHHHHhhhhcCCCCCCcccccccccccc-----ccchhhhhHhhhcccc-cccccCCCCcchHHHHH
Q 040200 37 ACSDNFLELDVCVDVLEALSRHLAPPSKNYCCSLIGNLVEL-----EAMGTCLCTALEVNVL-DVIKQETIPSASLSLLW 110 (132)
Q Consensus 37 ~CP~d~lkL~vCanVL~l~~~~lg~p~~~~CCsli~gL~dl-----dA~avCLCtAikanvL-gI~~l~~ip~v~l~lll 110 (132)
+|.....+|.-|.+.+. -|.+|...||+-+++|.+. |--+.|+|..-.+.-+ || |.+ ...-|-
T Consensus 2 ~C~~v~~~L~pCl~yv~-----~~~~Ps~~CC~~lk~l~~~a~t~~d~~~~ClC~k~~~~~~~~i----n~~--~A~~LP 70 (91)
T 1siy_A 2 TCGQVQGNLAQCIGFLQ-----KGGVVPPSCCTGVKNILNSSRTTADRRAVCSCLKAAAGAVRGI----NPN--NAEALP 70 (91)
T ss_dssp CTTTTHHHHHHHHHHHT-----SCSCCCHHHHHHHHHHHTTTCSSHHHHHHHHHHHHHTTCCSSC----CHH--HHHHHH
T ss_pred CHHHHHHhccCcHHHHh-----CCCCCcHHHHHHHHHHHhhhccCCCCCcCCcccCCcccccCCc----CHH--HHHHHH
Confidence 36556667888998862 2344677899999998643 2114799973333334 44 333 345577
Q ss_pred HHhCCCCCC
Q 040200 111 EYCESEIPS 119 (132)
Q Consensus 111 n~CGk~~P~ 119 (132)
..||..+|-
T Consensus 71 ~~Cgv~~p~ 79 (91)
T 1siy_A 71 GKCGVNIPY 79 (91)
T ss_dssp HHHTCCCSS
T ss_pred HHcCCCCCC
Confidence 899998763
No 7
>1bwo_A NS-LTP1, nonspecific lipid-transfer protein; wheat, lipid binding, crystallography; HET: LPC; 2.10A {Triticum aestivum} SCOP: a.52.1.1 PDB: 1cz2_A* 1gh1_A 1be2_A* 1jtb_A* 1lip_A 1mid_A* 3cee_A* 3gsh_A*
Probab=86.98 E-value=0.069 Score=36.49 Aligned_cols=67 Identities=15% Similarity=0.300 Sum_probs=41.3
Q ss_pred ccchhHHHhHHHHhhhhcCCCCCCcccccccccccc-----ccchhhhhHhhhcccc-cccccCCCCcchHHHHHHHhCC
Q 040200 42 FLELDVCVDVLEALSRHLAPPSKNYCCSLIGNLVEL-----EAMGTCLCTALEVNVL-DVIKQETIPSASLSLLWEYCES 115 (132)
Q Consensus 42 ~lkL~vCanVL~l~~~~lg~p~~~~CCsli~gL~dl-----dA~avCLCtAikanvL-gI~~l~~ip~v~l~llln~CGk 115 (132)
..+|.-|.+.+. -|.+|..+||.-+++|... |--+.|+|..-.+.-+ || |.+ ....|-..||-
T Consensus 7 ~~~L~pCl~y~~-----~~~~Ps~~CC~~lk~l~~~a~t~~dr~~~ClClk~~~~~~~~i----n~~--~A~~LP~~C~v 75 (90)
T 1bwo_A 7 DSLVRPCLSYVQ-----GGPGPSGQCCDGVKNLHNQARSQSDRQSACNCLKGIARGIHNL----NED--NARSIPPKCGV 75 (90)
T ss_dssp HHHHGGGHHHHT-----TCSCCCHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHTTCTTC----CHH--HHHTHHHHHTC
T ss_pred HHhhcccHHHHc-----CCCCCCHHHhHHHHHHHhhccCCCCCCccCcCccCchhccCCc----CHH--HHHHHHHHcCC
Confidence 446777877762 2334677899999998732 1014799953333334 44 333 34457789999
Q ss_pred CCCC
Q 040200 116 EIPS 119 (132)
Q Consensus 116 ~~P~ 119 (132)
.+|-
T Consensus 76 ~~p~ 79 (90)
T 1bwo_A 76 NLPY 79 (90)
T ss_dssp CCSS
T ss_pred CCCC
Confidence 8763
No 8
>1afh_A Maize nonspecific lipid transfer protein; lipid-binding protein, molecular modeling,; NMR {Zea mays} SCOP: a.52.1.1 PDB: 1fk0_A* 1fk1_A* 1fk2_A* 1fk3_A* 1fk4_A* 1fk5_A* 1fk6_A* 1fk7_A* 1mzl_A 1mzm_A* 1bv2_A 1rzl_A* 1uva_A* 1uvb_A* 1uvc_A*
Probab=86.49 E-value=0.095 Score=35.92 Aligned_cols=71 Identities=15% Similarity=0.326 Sum_probs=44.0
Q ss_pred CCccccchhHHHhHHHHhhhhcCCCCCCcccccccccccc-----ccchhhhhHhhhcccc-cccccCCCCcchHHHHHH
Q 040200 38 CSDNFLELDVCVDVLEALSRHLAPPSKNYCCSLIGNLVEL-----EAMGTCLCTALEVNVL-DVIKQETIPSASLSLLWE 111 (132)
Q Consensus 38 CP~d~lkL~vCanVL~l~~~~lg~p~~~~CCsli~gL~dl-----dA~avCLCtAikanvL-gI~~l~~ip~v~l~llln 111 (132)
|.....+|.-|.+.+. .-+.+|..+||+-+++|... |--+.|+|....+.-+ || |.. ....|=.
T Consensus 4 C~~v~~~L~pCl~y~~----~~~~~Ps~~CC~gv~~l~~~a~t~~dr~~~ClC~~~~~~~~~~i----n~~--~A~~LP~ 73 (93)
T 1afh_A 4 CGQVASAIAPCISYAR----GQGSGPSAGCCSGVRSLNNAARTTADRRAACNCLKNAAAGVSGL----NAG--NAASIPS 73 (93)
T ss_dssp SHHHHHHHGGGHHHHT----TSCCSCCHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHTTSTTC----CHH--HHHHHHH
T ss_pred hHHHHHhccCcHHHHc----CCCCCChHHHHHHHHHHHHhhcCCCCCcccCEeeccccccccCc----CHH--HHHHHHH
Confidence 5444557788888862 11334566899999998521 1013799976555444 44 333 3444778
Q ss_pred HhCCCCC
Q 040200 112 YCESEIP 118 (132)
Q Consensus 112 ~CGk~~P 118 (132)
.||-.+|
T Consensus 74 ~C~v~~p 80 (93)
T 1afh_A 74 KCGVSIP 80 (93)
T ss_dssp HHHCCCS
T ss_pred HcCCCCC
Confidence 8999875
No 9
>2ljo_A Non-specific lipid-transfer protein 2; lipid transport; NMR {Lens culinaris}
Probab=85.99 E-value=0.18 Score=34.85 Aligned_cols=76 Identities=20% Similarity=0.361 Sum_probs=47.3
Q ss_pred ccchhHHHhHHHHhhhhcCCCCCCcccccccccccccc---chhhhhHhhhcccccccccCCCCcchHHHHHHHhCCCCC
Q 040200 42 FLELDVCVDVLEALSRHLAPPSKNYCCSLIGNLVELEA---MGTCLCTALEVNVLDVIKQETIPSASLSLLWEYCESEIP 118 (132)
Q Consensus 42 ~lkL~vCanVL~l~~~~lg~p~~~~CCsli~gL~dldA---~avCLCtAikanvLgI~~l~~ip~v~l~llln~CGk~~P 118 (132)
...|.-|.+.+. -|..|..+||.=+++|.+.-- -..|+|..+|...-++..+ |. -...-|=..||-++|
T Consensus 8 ~~~L~pCl~Yv~-----g~~~p~~~CC~gv~~l~~~a~t~~dr~~~C~clk~~a~~~~~i-n~--~~a~~LP~~CgV~~p 79 (93)
T 2ljo_A 8 TSDLSPCLTYLT-----GGPGPSPQCCGGVKKLLAAANTTPDRQAACNCLKSAAGSITKL-NT--NNAAALPGKCGVNIP 79 (93)
T ss_dssp HHHHHHHHHHHT-----TSSCCCHHHHHHHHHHHHSCCSHHHHHHHHHHHHHHGGGCTTC-CH--HHHHHHHHHHTCCCS
T ss_pred HHHHHhHHHHHc-----CCCCCCCchhhHHHHHHHHhcCcccHHHHHHhHHhhhhccCCc-CH--HHHHhhhHhcCCCCC
Confidence 345666777651 144466789998888865311 0258888888654332123 33 245557789999998
Q ss_pred ----CCcccCC
Q 040200 119 ----SDFQCIN 125 (132)
Q Consensus 119 ----~gF~C~~ 125 (132)
+.+.|..
T Consensus 80 ~~Is~~~dC~~ 90 (93)
T 2ljo_A 80 YKISTTTNCNT 90 (93)
T ss_dssp SCCSTTCCGGG
T ss_pred CCCCCCCCCCC
Confidence 6777754
No 10
>1t12_A LTP 1, nonspecific lipid-transfer protein 1; cystein rich protein, lipid transport; NMR {Nicotiana tabacum}
Probab=81.73 E-value=0.28 Score=33.51 Aligned_cols=69 Identities=22% Similarity=0.440 Sum_probs=42.2
Q ss_pred CCccccchhHHHhHHHHhhhhcCCCCCCccccccccccccc-----cchhhhhHhhhcccc-cccccCCCCcchHHHHHH
Q 040200 38 CSDNFLELDVCVDVLEALSRHLAPPSKNYCCSLIGNLVELE-----AMGTCLCTALEVNVL-DVIKQETIPSASLSLLWE 111 (132)
Q Consensus 38 CP~d~lkL~vCanVL~l~~~~lg~p~~~~CCsli~gL~dld-----A~avCLCtAikanvL-gI~~l~~ip~v~l~llln 111 (132)
|-....+|.-|.+.+. . |.+|. .||+-+++|...- --+.|+|..--++-+ || |.. ....|-.
T Consensus 4 C~~v~~~L~pCl~y~~----~-~~~P~-~CC~gv~~l~~~a~t~~dr~~~ClClk~~~~~~~~i----n~~--~A~~LP~ 71 (91)
T 1t12_A 4 CGQVTSNLAPCLAYLR----N-TGPLG-RCCGGVKALVNSARTTEDRQIACTCLKSAAGAISGI----NLG--KAAGLPS 71 (91)
T ss_dssp HHHHHHHTHHHHHHHT----T-SSCCT-THHHHHHHHHHTTCSTHHHHHHHHHHHHHHHHCTTC----CHH--HHHHHHH
T ss_pred hHHHHHhccCcHHHHc----C-CCChH-HHHHHHHHHHhhccCCCCCCccCCCccccccccCCc----Chh--HHHHHHH
Confidence 4444456777888762 1 22355 8999999987531 014899963333334 44 332 3445778
Q ss_pred HhCCCCC
Q 040200 112 YCESEIP 118 (132)
Q Consensus 112 ~CGk~~P 118 (132)
.||-.+|
T Consensus 72 ~C~v~~p 78 (91)
T 1t12_A 72 TCGVNIP 78 (91)
T ss_dssp HTTCCCS
T ss_pred HcCCCCC
Confidence 9999876
Done!