BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 040203
(202 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1JER|A Chain A, Cucumber Stellacyanin, Cu2+, Ph 7.0
Length = 138
Score = 95.9 bits (237), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 50/105 (47%), Positives = 60/105 (57%), Gaps = 3/105 (2%)
Query: 26 TVHVVGDSMGWSIPMSGGAGAYVAWAATKNFVVGDVLTFNFVTNEHDVLRVP-KASYDGC 84
TVH+VGD+ GWS+P S Y WAA K F VGD L FNF N H+V + K S+D C
Sbjct: 4 TVHIVGDNTGWSVPSS--PNFYSQWAAGKTFRVGDSLQFNFPANAHNVHEMETKQSFDAC 61
Query: 85 TSSNPIGNPITTGPTNITLDSAGEHYYICTFGWHCQAGQKLAITV 129
N + T P LD G HY++CT G HC GQKL+I V
Sbjct: 62 NFVNSDNDVERTSPVIERLDELGMHYFVCTVGTHCSNGQKLSINV 106
>pdb|1X9R|A Chain A, Umecyanin From Horse Raddish- Crystal Structure Of The
Oxidised Form
pdb|1X9R|B Chain B, Umecyanin From Horse Raddish- Crystal Structure Of The
Oxidised Form
pdb|1X9U|A Chain A, Umecyanin From Horse Raddish- Crystal Structure Of The
Reduced Form
pdb|1X9U|B Chain B, Umecyanin From Horse Raddish- Crystal Structure Of The
Reduced Form
Length = 116
Score = 90.9 bits (224), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 46/100 (46%), Positives = 56/100 (56%), Gaps = 3/100 (3%)
Query: 30 VGDSMGWSIPMSGGAGAYVAWAATKNFVVGDVLTFNFVTNEHDVLRVPKASYDGCTSSNP 89
VG M W P Y+ WA K F VGD L F+F HDV V K ++D C NP
Sbjct: 6 VGGDMEWKRP--SDPKFYITWATGKTFRVGDELEFDFAAGMHDVAVVTKDAFDNCKKENP 63
Query: 90 IGNPITTGPTNITLDSAGEHYYICTFGWHCQAGQKLAITV 129
I + +TT P I L++ G YYICT G HC+ GQKL+I V
Sbjct: 64 ISH-MTTPPVKIMLNTTGPQYYICTVGDHCRVGQKLSINV 102
>pdb|1WS7|A Chain A, Crystal Structure Of Mavicyanin From Cucurbita Pepo
Medullosa (Zucchini)
pdb|1WS7|B Chain B, Crystal Structure Of Mavicyanin From Cucurbita Pepo
Medullosa (Zucchini)
pdb|1WS7|C Chain C, Crystal Structure Of Mavicyanin From Cucurbita Pepo
Medullosa (Zucchini)
pdb|1WS7|D Chain D, Crystal Structure Of Mavicyanin From Cucurbita Pepo
Medullosa (Zucchini)
pdb|1WS8|A Chain A, Crystal Structure Of Mavicyanin From Cucurbita Pepo
Medullosa (zucchini)
pdb|1WS8|B Chain B, Crystal Structure Of Mavicyanin From Cucurbita Pepo
Medullosa (zucchini)
pdb|1WS8|C Chain C, Crystal Structure Of Mavicyanin From Cucurbita Pepo
Medullosa (zucchini)
pdb|1WS8|D Chain D, Crystal Structure Of Mavicyanin From Cucurbita Pepo
Medullosa (zucchini)
Length = 109
Score = 80.9 bits (198), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 43/106 (40%), Positives = 59/106 (55%), Gaps = 8/106 (7%)
Query: 26 TVHVVGDSMGWS--IPMSGGAGAYVAWAATKNFVVGDVLTFNFVTNEHDVLRVPKASYDG 83
TVH VGDS GW+ +P Y WA++ F VGD L FN+ H+VL+V + +
Sbjct: 3 TVHKVGDSTGWTTLVPYD-----YAKWASSNKFHVGDSLLFNYNNKFHNVLQVDQEQFKS 57
Query: 84 CTSSNPIGNPITTGPTNITLDSAGEHYYICTFGWHCQAGQKLAITV 129
C SS+P + T+G +I L G Y++C HCQ GQK+ I V
Sbjct: 58 CNSSSPAAS-YTSGADSIPLKRPGTFYFLCGIPGHCQLGQKVEIKV 102
>pdb|2CBP|A Chain A, Cucumber Basic Protein, A Blue Copper Protein
Length = 96
Score = 62.0 bits (149), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 36/103 (34%), Positives = 54/103 (52%), Gaps = 11/103 (10%)
Query: 27 VHVVGDSMGWSIPMSGGAGAYVAWAATKNFVVGDVLTFNFVTNEHDVLRVPKASYDGCTS 86
V+VVG S GW+ +W K F GD+L FN+ + H+V+ V + + C +
Sbjct: 2 VYVVGGSGGWTFNTE-------SWPKGKRFRAGDILLFNYNPSMHNVVVVNQGGFSTCNT 54
Query: 87 SNPIGNPI-TTGPTNITLDSAGEHYYICTFGWHCQAGQKLAIT 128
P G + T+G I L G+ Y+IC F HCQ+G K+A+
Sbjct: 55 --PAGAKVYTSGRDQIKLPK-GQSYFICNFPGHCQSGMKIAVN 94
>pdb|1F56|A Chain A, Spinach Plantacyanin
pdb|1F56|B Chain B, Spinach Plantacyanin
pdb|1F56|C Chain C, Spinach Plantacyanin
Length = 91
Score = 58.9 bits (141), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 33/97 (34%), Positives = 53/97 (54%), Gaps = 12/97 (12%)
Query: 33 SMGWSIPMSGGAGAYVAWAATKNFVVGDVLTFNFVTNEHDVLRVPKASYDGCTSSNPIG- 91
++GWS ++G G K+F GDVL F ++ +H+V+ V Y C++ P G
Sbjct: 4 NIGWSFNVNGARG--------KSFRAGDVLVFKYIKGQHNVVAVNGRGYASCSA--PRGA 53
Query: 92 NPITTGPTNITLDSAGEHYYICTFGWHCQAGQKLAIT 128
++G I L + G++Y+IC+F HC G K+AI
Sbjct: 54 RTYSSGQDRIKL-TRGQNYFICSFPGHCGGGMKIAIN 89
>pdb|1QHQ|A Chain A, Auracyanin, A Blue Copper Protein From The Green
Thermophilic Photosynthetic Bacterium Chloroflexus
Aurantiacus
pdb|1OV8|A Chain A, Auracyanin B Structure In Space Group, P65
pdb|1OV8|B Chain B, Auracyanin B Structure In Space Group, P65
pdb|1OV8|C Chain C, Auracyanin B Structure In Space Group, P65
pdb|1OV8|D Chain D, Auracyanin B Structure In Space Group, P65
Length = 140
Score = 28.9 bits (63), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 25/61 (40%)
Query: 69 NEHDVLRVPKASYDGCTSSNPIGNPITTGPTNITLDSAGEHYYICTFGWHCQAGQKLAIT 128
N D L VP + + N +G + G + YICTF H AG K +T
Sbjct: 78 NNADALFVPPPDTPNALAWTAMLNAGESGSVTFRTPAPGTYLYICTFPGHYLAGMKGTLT 137
Query: 129 V 129
V
Sbjct: 138 V 138
>pdb|1H0H|A Chain A, Tungsten Containing Formate Dehydrogenase From
Desulfovibrio Gigas
pdb|1H0H|K Chain K, Tungsten Containing Formate Dehydrogenase From
Desulfovibrio Gigas
Length = 977
Score = 27.3 bits (59), Expect = 5.8, Method: Composition-based stats.
Identities = 17/49 (34%), Positives = 23/49 (46%), Gaps = 2/49 (4%)
Query: 23 EAQTVHVVGDS--MGWSIPMSGGAGAYVAWAATKNFVVGDVLTFNFVTN 69
+ Q VH+VG GWS P +GG A + + N G T F+ N
Sbjct: 925 QGQQVHMVGIPWHYGWSFPKNGGDAANILTPSVGNPNTGIPETKAFMVN 973
>pdb|2I0Z|A Chain A, Crystal Structure Of A Fad Binding Protein From Bacillus
Cereus, A Putative Nad(Fad)-Utilizing Dehydrogenases
Length = 447
Score = 26.9 bits (58), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 20/41 (48%)
Query: 11 GLIGAVLLMECAEAQTVHVVGDSMGWSIPMSGGAGAYVAWA 51
G AV+L +T HVV G S+P +G G AWA
Sbjct: 165 GQTKAVILQTGEVLETNHVVIAVGGKSVPQTGSTGDGYAWA 205
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.134 0.420
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,136,296
Number of Sequences: 62578
Number of extensions: 158148
Number of successful extensions: 395
Number of sequences better than 100.0: 12
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 381
Number of HSP's gapped (non-prelim): 12
length of query: 202
length of database: 14,973,337
effective HSP length: 94
effective length of query: 108
effective length of database: 9,091,005
effective search space: 981828540
effective search space used: 981828540
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 49 (23.5 bits)