Query 040203
Match_columns 202
No_of_seqs 131 out of 870
Neff 5.5
Searched_HMMs 46136
Date Fri Mar 29 06:07:29 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040203.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/040203hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03148 Blue copper-like prot 100.0 4.7E-42 1E-46 282.7 15.3 108 17-131 12-119 (167)
2 PF02298 Cu_bind_like: Plastoc 100.0 4.5E-32 9.6E-37 201.0 3.8 85 36-123 1-85 (85)
3 PRK02710 plastocyanin; Provisi 98.8 5.6E-08 1.2E-12 75.7 11.5 111 1-130 1-119 (119)
4 PF00127 Copper-bind: Copper b 98.3 6.6E-07 1.4E-11 67.2 4.9 76 53-130 18-99 (99)
5 TIGR02656 cyanin_plasto plasto 98.3 4E-06 8.8E-11 63.0 8.7 75 53-130 18-99 (99)
6 TIGR03102 halo_cynanin halocya 98.2 1.2E-05 2.5E-10 63.0 9.2 88 24-130 22-115 (115)
7 COG3794 PetE Plastocyanin [Ene 98.2 1.5E-05 3.2E-10 63.7 9.7 70 52-130 54-127 (128)
8 TIGR02375 pseudoazurin pseudoa 98.2 1.1E-05 2.4E-10 63.2 8.3 75 52-132 15-89 (116)
9 TIGR02657 amicyanin amicyanin. 97.4 0.0013 2.8E-08 47.8 7.8 70 53-130 12-83 (83)
10 TIGR03095 rusti_cyanin rusticy 97.3 0.00097 2.1E-08 54.1 7.7 72 55-130 55-148 (148)
11 PF06525 SoxE: Sulfocyanin (So 96.8 0.0075 1.6E-07 51.4 8.5 77 56-132 90-188 (196)
12 KOG3858 Ephrin, ligand for Eph 95.7 0.21 4.5E-06 43.8 11.7 78 55-134 46-164 (233)
13 PF00812 Ephrin: Ephrin; Inte 95.3 0.0094 2E-07 48.5 1.8 76 54-130 24-144 (145)
14 PF13473 Cupredoxin_1: Cupredo 94.5 0.014 3.1E-07 43.7 0.8 63 53-129 36-104 (104)
15 TIGR03094 sulfo_cyanin sulfocy 94.3 0.042 9E-07 46.6 3.2 29 104-132 159-187 (195)
16 COG4454 Uncharacterized copper 93.9 0.088 1.9E-06 43.5 4.4 80 51-130 62-157 (158)
17 TIGR03096 nitroso_cyanin nitro 93.5 0.12 2.6E-06 41.8 4.3 57 52-120 61-123 (135)
18 TIGR02695 azurin azurin. Azuri 92.3 1.4 3E-05 35.2 8.8 29 99-128 91-124 (125)
19 PF07172 GRP: Glycine rich pro 92.0 0.1 2.2E-06 39.7 1.9 28 1-28 1-28 (95)
20 PLN02354 copper ion binding / 90.1 3.3 7.2E-05 40.3 10.8 75 54-133 60-148 (552)
21 TIGR02376 Cu_nitrite_red nitri 87.7 1.5 3.2E-05 39.5 6.1 75 54-132 61-147 (311)
22 PLN02604 oxidoreductase 86.6 5.6 0.00012 38.7 9.8 79 53-133 56-146 (566)
23 PLN00044 multi-copper oxidase- 85.5 6.9 0.00015 38.6 9.9 75 54-133 62-150 (596)
24 PRK02888 nitrous-oxide reducta 83.7 4.4 9.5E-05 40.3 7.6 67 53-131 556-634 (635)
25 PF00116 COX2: Cytochrome C ox 81.9 2.3 5.1E-05 33.1 4.1 65 53-129 47-119 (120)
26 PF10731 Anophelin: Thrombin i 81.9 1.4 3.1E-05 31.0 2.6 32 1-35 1-32 (65)
27 PF07732 Cu-oxidase_3: Multico 80.3 1.1 2.3E-05 34.7 1.7 75 53-131 27-115 (117)
28 PLN02168 copper ion binding / 75.1 39 0.00084 33.0 11.0 80 53-133 58-147 (545)
29 PRK10378 inactive ferrous ion 73.4 23 0.0005 33.1 8.7 30 98-132 89-118 (375)
30 TIGR03388 ascorbase L-ascorbat 71.5 11 0.00024 36.5 6.3 78 53-133 33-123 (541)
31 COG1622 CyoA Heme/copper-type 69.2 5.4 0.00012 35.1 3.4 32 99-132 179-213 (247)
32 PF02839 CBM_5_12: Carbohydrat 68.7 2.7 5.7E-05 26.3 1.0 19 47-65 1-19 (41)
33 PRK09723 putative fimbrial-lik 68.3 65 0.0014 30.7 10.5 35 1-35 1-37 (421)
34 MTH00047 COX2 cytochrome c oxi 67.9 7.2 0.00016 33.1 3.8 32 100-133 159-193 (194)
35 TIGR02228 sigpep_I_arch signal 66.7 14 0.00031 30.1 5.2 25 53-77 58-86 (158)
36 PF12961 DUF3850: Domain of Un 65.2 5.1 0.00011 29.1 2.0 17 53-69 26-43 (72)
37 cd06555 ASCH_PF0470_like ASC-1 64.5 6.2 0.00013 30.7 2.5 23 54-76 30-53 (109)
38 TIGR02866 CoxB cytochrome c ox 64.3 9.3 0.0002 32.1 3.8 31 100-132 160-193 (201)
39 PLN02835 oxidoreductase 63.7 55 0.0012 31.8 9.4 78 54-132 62-149 (539)
40 TIGR01480 copper_res_A copper- 62.8 17 0.00036 35.9 5.7 85 36-129 488-586 (587)
41 PLN02191 L-ascorbate oxidase 58.0 55 0.0012 32.1 8.4 74 54-131 56-143 (574)
42 PF09792 But2: Ubiquitin 3 bin 55.1 43 0.00094 27.0 6.0 30 100-132 100-129 (143)
43 PLN02991 oxidoreductase 53.8 1.3E+02 0.0028 29.4 10.1 79 53-132 60-148 (543)
44 MTH00140 COX2 cytochrome c oxi 49.1 23 0.0005 30.5 3.8 30 100-131 183-215 (228)
45 PLN02792 oxidoreductase 45.9 76 0.0016 30.9 7.1 74 54-132 49-136 (536)
46 PTZ00047 cytochrome c oxidase 42.6 35 0.00075 28.5 3.7 30 100-131 116-148 (162)
47 PF05382 Amidase_5: Bacterioph 42.2 51 0.0011 26.8 4.5 35 54-88 74-113 (145)
48 PF02362 B3: B3 DNA binding do 41.4 22 0.00048 25.5 2.2 19 51-69 69-87 (100)
49 MTH00154 COX2 cytochrome c oxi 41.1 36 0.00079 29.4 3.8 30 100-131 183-215 (227)
50 TIGR01653 lactococcin_972 bact 40.9 35 0.00076 25.9 3.2 32 1-32 1-34 (92)
51 TIGR03389 laccase laccase, pla 39.9 1.1E+02 0.0023 29.6 7.2 82 55-138 37-129 (539)
52 MTH00117 COX2 cytochrome c oxi 39.7 41 0.0009 29.0 3.9 30 100-131 183-215 (227)
53 PF00686 CBM_20: Starch bindin 39.7 19 0.0004 26.3 1.5 43 25-67 16-67 (96)
54 MTH00168 COX2 cytochrome c oxi 39.5 39 0.00085 29.1 3.7 30 100-131 183-215 (225)
55 PRK11546 zraP zinc resistance 39.2 24 0.00052 28.8 2.2 36 1-37 1-37 (143)
56 PF10377 ATG11: Autophagy-rela 39.0 21 0.00045 28.3 1.8 19 54-72 41-59 (129)
57 MTH00139 COX2 cytochrome c oxi 38.1 40 0.00087 28.9 3.6 30 100-131 183-215 (226)
58 TIGR01433 CyoA cytochrome o ub 38.1 42 0.00091 29.0 3.7 30 100-131 182-214 (226)
59 MTH00129 COX2 cytochrome c oxi 38.0 39 0.00084 29.3 3.5 30 100-131 183-215 (230)
60 MTH00098 COX2 cytochrome c oxi 37.8 42 0.00092 29.0 3.7 30 100-131 183-215 (227)
61 TIGR01480 copper_res_A copper- 37.4 86 0.0019 31.0 6.1 72 54-131 78-162 (587)
62 MTH00038 COX2 cytochrome c oxi 36.4 48 0.001 28.6 3.8 30 100-131 183-215 (229)
63 PF04014 Antitoxin-MazE: Antid 36.4 17 0.00037 23.3 0.8 33 29-69 2-34 (47)
64 cd05820 CBM20_novamyl Novamyl 36.3 19 0.00041 27.0 1.1 43 25-67 19-69 (103)
65 cd05810 CBM20_alpha_MTH Glucan 35.8 20 0.00043 26.7 1.1 43 25-67 16-63 (97)
66 PRK09838 periplasmic copper-bi 35.6 2E+02 0.0043 22.4 6.8 19 50-68 83-101 (115)
67 MTH00023 COX2 cytochrome c oxi 34.2 51 0.0011 28.7 3.6 30 100-131 194-226 (240)
68 TIGR02227 sigpep_I_bact signal 34.0 1.2E+02 0.0025 24.4 5.5 14 54-67 50-63 (163)
69 PF07127 Nodulin_late: Late no 32.6 43 0.00094 22.3 2.3 20 1-20 1-20 (54)
70 TIGR01432 QOXA cytochrome aa3 32.0 59 0.0013 27.7 3.6 31 100-132 173-206 (217)
71 KOG3416 Predicted nucleic acid 31.9 44 0.00095 27.0 2.6 31 27-65 40-71 (134)
72 MTH00008 COX2 cytochrome c oxi 31.8 59 0.0013 28.1 3.6 30 100-131 183-215 (228)
73 PF02553 CbiN: Cobalt transpor 31.0 45 0.00097 24.3 2.3 9 45-53 47-55 (74)
74 PRK10861 signal peptidase I; P 30.8 1.2E+02 0.0026 27.9 5.6 16 53-68 123-138 (324)
75 PF12273 RCR: Chitin synthesis 30.8 24 0.00053 27.5 1.0 8 45-52 34-41 (130)
76 PRK13838 conjugal transfer pil 30.6 33 0.00072 28.5 1.8 15 53-67 48-62 (176)
77 PF07731 Cu-oxidase_2: Multico 30.5 28 0.0006 26.5 1.2 32 100-131 105-136 (138)
78 PLN00115 pollen allergen group 30.3 87 0.0019 24.6 4.0 33 1-34 1-34 (118)
79 KOG1263 Multicopper oxidases [ 30.3 74 0.0016 31.4 4.4 36 100-135 506-541 (563)
80 smart00495 ChtBD3 Chitin-bindi 29.7 31 0.00067 21.3 1.1 18 47-64 1-18 (41)
81 PF12071 DUF3551: Protein of u 29.7 52 0.0011 24.3 2.5 29 1-29 1-31 (82)
82 MTH00076 COX2 cytochrome c oxi 29.3 67 0.0014 27.8 3.5 30 100-131 183-215 (228)
83 MTH00051 COX2 cytochrome c oxi 29.0 64 0.0014 28.0 3.4 30 100-131 187-219 (234)
84 PF06462 Hyd_WA: Propeller; I 28.9 1.1E+02 0.0025 18.2 3.5 26 99-124 2-27 (32)
85 PRK10081 entericidin B membran 28.1 60 0.0013 21.8 2.3 17 1-17 1-17 (48)
86 MTH00027 COX2 cytochrome c oxi 27.1 82 0.0018 28.0 3.7 30 100-131 217-249 (262)
87 COG3627 PhnJ Uncharacterized e 27.0 38 0.00083 29.8 1.6 25 99-123 257-281 (291)
88 cd05813 CBM20_genethonin_1 Gen 26.3 49 0.0011 24.0 1.9 42 26-67 17-61 (95)
89 PF09451 ATG27: Autophagy-rela 26.2 82 0.0018 27.6 3.6 24 24-52 222-245 (268)
90 PRK13697 cytochrome c6; Provis 25.8 41 0.00088 24.9 1.4 14 1-14 1-14 (111)
91 PRK10808 outer membrane protei 25.2 77 0.0017 28.6 3.3 13 27-39 27-39 (351)
92 PF05984 Cytomega_UL20A: Cytom 24.9 67 0.0015 24.3 2.4 13 1-13 1-13 (100)
93 cd05808 CBM20_alpha_amylase Al 24.9 49 0.0011 23.7 1.6 43 25-67 15-62 (95)
94 PRK10525 cytochrome o ubiquino 24.6 86 0.0019 28.7 3.5 29 100-130 194-225 (315)
95 PLN02792 oxidoreductase 24.2 1.1E+02 0.0024 29.7 4.4 78 55-132 406-506 (536)
96 PF14326 DUF4384: Domain of un 24.2 95 0.002 22.1 3.0 16 55-70 2-17 (83)
97 KOG1546 Metacaspase involved i 23.6 47 0.001 30.9 1.6 13 55-67 134-146 (362)
98 TIGR01626 ytfJ_HI0045 conserve 23.5 62 0.0013 27.2 2.2 25 42-68 44-68 (184)
99 PF11604 CusF_Ec: Copper bindi 23.2 54 0.0012 23.0 1.5 23 48-70 35-57 (70)
100 PF13209 DUF4017: Protein of u 23.2 60 0.0013 22.5 1.7 34 1-39 1-35 (60)
101 TIGR02771 TraF_Ti conjugative 22.9 39 0.00084 27.9 0.8 16 52-67 43-58 (171)
102 PF02157 Man-6-P_recep: Mannos 22.8 28 0.00061 31.4 0.0 36 27-68 212-247 (278)
103 PRK13914 invasion associated s 22.6 76 0.0016 30.8 2.9 50 16-65 18-72 (481)
104 MTH00185 COX2 cytochrome c oxi 22.5 1.1E+02 0.0024 26.5 3.6 30 100-131 183-215 (230)
105 PLN02217 probable pectinestera 22.5 2.3E+02 0.0049 28.7 6.2 21 152-172 591-611 (670)
106 KOG1263 Multicopper oxidases [ 22.2 3.9E+02 0.0084 26.4 7.7 81 53-136 60-152 (563)
107 PF08194 DIM: DIM protein; In 21.9 1.3E+02 0.0029 19.0 2.9 9 23-31 22-30 (36)
108 TIGR00601 rad23 UV excision re 21.5 6.7E+02 0.015 23.4 9.1 12 121-132 66-77 (378)
109 TIGR03390 ascorbOXfungal L-asc 21.2 96 0.0021 30.1 3.3 33 100-132 502-534 (538)
110 KOG2315 Predicted translation 20.8 1.9E+02 0.0041 28.7 5.1 60 51-110 210-274 (566)
111 PRK10883 FtsI repressor; Provi 20.8 5.1E+02 0.011 24.7 8.1 84 55-138 80-172 (471)
112 MTH00080 COX2 cytochrome c oxi 20.8 1.3E+02 0.0028 26.2 3.7 30 100-131 186-218 (231)
113 cd05809 CBM20_beta_amylase Bet 20.5 78 0.0017 23.3 2.0 43 25-67 18-67 (99)
114 PLN02835 oxidoreductase 20.4 1.4E+02 0.003 29.2 4.1 33 100-132 482-514 (539)
115 TIGR03388 ascorbase L-ascorbat 20.2 4.4E+02 0.0096 25.5 7.6 76 55-130 419-524 (541)
116 PRK01326 prsA foldase protein 20.2 1.4E+02 0.0031 26.6 4.0 33 1-33 1-36 (310)
No 1
>PLN03148 Blue copper-like protein; Provisional
Probab=100.00 E-value=4.7e-42 Score=282.67 Aligned_cols=108 Identities=32% Similarity=0.642 Sum_probs=100.3
Q ss_pred HHhhhcccceEEEecCCCCCCCCCCCCCcchhhhccCCceEeCCEEEEeecCCCceEEEecccCCCCCCCCCCCCCCccC
Q 040203 17 LLMECAEAQTVHVVGDSMGWSIPMSGGAGAYVAWAATKNFVVGDVLTFNFVTNEHDVLRVPKASYDGCTSSNPIGNPITT 96 (202)
Q Consensus 17 ~~l~~~a~a~~~~VGg~~GW~~~~~~~~~~Y~~WAs~~tF~vGD~LvF~y~~~~H~V~~V~~~~Y~~C~~s~~~~~~~s~ 96 (202)
+++...+.+++|+|||+.||+.. .+|++|+++|+|++||+|+|+|+++.|||+||++++|++|+.++++ ..+++
T Consensus 12 ~~~~~~~~a~~~~VGd~~GW~~~-----~~Y~~WA~~k~F~VGD~LvF~Y~~~~hnV~~V~~~~Y~~C~~~~pi-~~~ts 85 (167)
T PLN03148 12 LFSASATTATDHIVGANKGWNPG-----INYTLWANNQTFYVGDLISFRYQKTQYNVFEVNQTGYDNCTTEGAA-GNWTS 85 (167)
T ss_pred HHhhhhccceEEEeCCCCCcCCC-----CChhHhhcCCCCccCCEEEEEecCCCceEEEEChHHcCcccCCCCc-ceecC
Confidence 33445678999999999999954 6899999999999999999999999999999999999999999999 88999
Q ss_pred CCcEEEeCCCCcEEEEcCCCCCCCCCCeEEEEecC
Q 040203 97 GPTNITLDSAGEHYYICTFGWHCQAGQKLAITVSA 131 (202)
Q Consensus 97 G~~~v~L~~~G~~YFiC~v~~HC~~GmKl~I~V~~ 131 (202)
|++.|+|+++|+|||||+ .+||++||||.|+|.+
T Consensus 86 G~d~v~L~~~G~~YFIcg-~ghC~~GmKl~I~V~~ 119 (167)
T PLN03148 86 GKDFIPLNKAKRYYFICG-NGQCFNGMKVTILVHP 119 (167)
T ss_pred CCcEEEecCCccEEEEcC-CCccccCCEEEEEEcC
Confidence 999999999999999999 5899999999999964
No 2
>PF02298 Cu_bind_like: Plastocyanin-like domain; InterPro: IPR003245 Blue (type 1) copper proteins are small proteins which bind a single copper atom and which are characterised by an intense electronic absorption band near 600 nm [, ]. The most well known members of this class of proteins are the plant chloroplastic plastocyanins, which exchange electrons with cytochrome c6, and the distantly related bacterial azurins, which exchange electrons with cytochrome c551. This family of proteins also includes amicyanin from bacteria such as Methylobacterium extorquens or Paracoccus versutus (Thiobacillus versutus) that can grow on methylamine; auracyanins A and B from Chloroflexus aurantiacus []; blue copper protein from Alcaligenes faecalis; cupredoxin (CPC) from Cucumis sativus (Cucumber) peelings []; cusacyanin (basic blue protein; plantacyanin, CBP) from cucumber; halocyanin from Natronomonas pharaonis (Natronobacterium pharaonis) [], a membrane associated copper-binding protein; pseudoazurin from Pseudomonas; rusticyanin from Thiobacillus ferrooxidans []; stellacyanin from Rhus vernicifera (Japanese lacquer tree); umecyanin from the roots of Armoracia rusticana (Horseradish); and allergen Ra3 from ragweed. Although there is an appreciable amount of divergence in the sequences of all these proteins, the copper ligand sites are conserved. This domain is found in a variety of plant cyanins and pollern allergen. Some of the proteins in this family are allergens. Allergies are hypersensitivity reactions of the immune system to specific substances called allergens (such as pollen, stings, drugs, or food) that, in most people, result in no symptoms. A nomenclature system has been established for antigens (allergens) that cause IgE-mediated atopic allergies in humans [WHO/IUIS Allergen Nomenclature Subcommittee King T.P., Hoffmann D., Loewenstein H., Marsh D.G., Platts-Mills T.A.E., Thomas W. Bull. World Health Organ. 72:797-806(1994)]. This nomenclature system is defined by a designation that is composed of the first three letters of the genus; a space; the first letter of the species name; a space and an arabic number. In the event that two species names have identical designations, they are discriminated from one another by adding one or more letters (as necessary) to each species designation. The allergens in this family include allergens with the following designations: Amb a 3.; GO: 0005507 copper ion binding, 0009055 electron carrier activity; PDB: 1JER_A 1WS7_A 1WS8_D 1F56_B 1X9R_B 1X9U_A 2CBP_A.
Probab=99.97 E-value=4.5e-32 Score=201.05 Aligned_cols=85 Identities=49% Similarity=0.973 Sum_probs=69.6
Q ss_pred CCCCCCCCCcchhhhccCCceEeCCEEEEeecCCCceEEEecccCCCCCCCCCCCCCCccCCCcEEEeCCCCcEEEEcCC
Q 040203 36 WSIPMSGGAGAYVAWAATKNFVVGDVLTFNFVTNEHDVLRVPKASYDGCTSSNPIGNPITTGPTNITLDSAGEHYYICTF 115 (202)
Q Consensus 36 W~~~~~~~~~~Y~~WAs~~tF~vGD~LvF~y~~~~H~V~~V~~~~Y~~C~~s~~~~~~~s~G~~~v~L~~~G~~YFiC~v 115 (202)
|+++.. ..+|++||++++|+|||+|+|+|+++.|||+||++++|++|+.++++ ..+.+|++.|+|+++|++||||++
T Consensus 1 W~~~~~--~~~Y~~Wa~~~~F~vGD~LvF~y~~~~h~V~~V~~~~y~~C~~~~~~-~~~~~G~~~v~L~~~G~~YFic~~ 77 (85)
T PF02298_consen 1 WTIPTN--ASNYTDWASGKTFRVGDTLVFNYDSGQHSVVEVSKADYDSCNSSNPI-STYSTGNDTVTLTKPGPHYFICGV 77 (85)
T ss_dssp SSSSSS--TTHHHHHHCTS-BETTEEEEEE--TTTB-EEEESHHHHHHT--STTS-EEE-SSEEEEEE-SSEEEEEE--S
T ss_pred CccCCC--ccchhHhhcCCcEeCCCEEEEEecCCCCeEEecChhhCccCCCCCce-ecccCCCEEEEeCCCcCeEEEeCC
Confidence 887732 27999999999999999999999999999999999999999999999 889999999999999999999999
Q ss_pred CCCCCCCC
Q 040203 116 GWHCQAGQ 123 (202)
Q Consensus 116 ~~HC~~Gm 123 (202)
++||+.||
T Consensus 78 ~~HC~~Gq 85 (85)
T PF02298_consen 78 PGHCQKGQ 85 (85)
T ss_dssp TTTTTTT-
T ss_pred CCcccccC
Confidence 99999999
No 3
>PRK02710 plastocyanin; Provisional
Probab=98.84 E-value=5.6e-08 Score=75.74 Aligned_cols=111 Identities=21% Similarity=0.229 Sum_probs=67.9
Q ss_pred CcchhHHHHHHHHHHHH---HhhhcccceEEE--ecCCCCC-CCCCCCCCcchhhhccCCceEeCCEEEEeec-CCCceE
Q 040203 1 MEKFVSMAFVGLIGAVL---LMECAEAQTVHV--VGDSMGW-SIPMSGGAGAYVAWAATKNFVVGDVLTFNFV-TNEHDV 73 (202)
Q Consensus 1 Ma~~~~~~~~~~~~~~~---~l~~~a~a~~~~--VGg~~GW-~~~~~~~~~~Y~~WAs~~tF~vGD~LvF~y~-~~~H~V 73 (202)
|++++++++..+++++. +....+.+.+|. +|.++|+ .+. | +..++++||+|.|... ...||+
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~a~a~~~~V~~~~~~~~~~F~-P----------~~i~v~~Gd~V~~~N~~~~~H~v 69 (119)
T PRK02710 1 MAKRLRSIAAALVAVVSSFGLGVSSASAETVEVKMGSDAGMLAFE-P----------STLTIKAGDTVKWVNNKLAPHNA 69 (119)
T ss_pred CchhHHHHHHHHHHHHHHHHhcccccccceEEEEEccCCCeeEEe-C----------CEEEEcCCCEEEEEECCCCCceE
Confidence 67777666533332222 222333444444 4655554 222 1 3669999999999763 467998
Q ss_pred EEecccCCCCCCCCCCCCCCccCC-CcEEEeCCCCcEEEEcCCCCCCCCCCeEEEEec
Q 040203 74 LRVPKASYDGCTSSNPIGNPITTG-PTNITLDSAGEHYYICTFGWHCQAGQKLAITVS 130 (202)
Q Consensus 74 ~~V~~~~Y~~C~~s~~~~~~~s~G-~~~v~L~~~G~~YFiC~v~~HC~~GmKl~I~V~ 130 (202)
..-.. +.....+. ....| ...++++++|.|.|+|. .|=+.|||-.|.|.
T Consensus 70 ~~~~~---~~~~~~~~---~~~pg~t~~~tF~~~G~y~y~C~--~H~~~gM~G~I~V~ 119 (119)
T PRK02710 70 VFDGA---KELSHKDL---AFAPGESWEETFSEAGTYTYYCE--PHRGAGMVGKITVE 119 (119)
T ss_pred EecCC---cccccccc---ccCCCCEEEEEecCCEEEEEEcC--CCccCCcEEEEEEC
Confidence 64211 11111111 12334 36889999999999998 79999999999984
No 4
>PF00127 Copper-bind: Copper binding proteins, plastocyanin/azurin family; InterPro: IPR000923 Blue (type 1) copper proteins are small proteins which bind a single copper atom and which are characterised by an intense electronic absorption band near 600 nm [, ]. The most well known members of this class of proteins are the plant chloroplastic plastocyanins, which exchange electrons with cytochrome c6, and the distantly related bacterial azurins, which exchange electrons with cytochrome c551. This family of proteins also includes amicyanin from bacteria such as Methylobacterium extorquens or Paracoccus versutus (Thiobacillus versutus) that can grow on methylamine; auracyanins A and B from Chloroflexus aurantiacus []; blue copper protein from Alcaligenes faecalis; cupredoxin (CPC) from Cucumis sativus (Cucumber) peelings []; cusacyanin (basic blue protein; plantacyanin, CBP) from cucumber; halocyanin from Natronomonas pharaonis (Natronobacterium pharaonis) [], a membrane associated copper-binding protein; pseudoazurin from Pseudomonas; rusticyanin from Thiobacillus ferrooxidans []; stellacyanin from Rhus vernicifera (Japanese lacquer tree); umecyanin from the roots of Armoracia rusticana (Horseradish); and allergen Ra3 from ragweed. This pollen protein is evolutionary related to the above proteins, but seems to have lost the ability to bind copper. Although there is an appreciable amount of divergence in the sequences of all these proteins, the copper ligand sites are conserved.; GO: 0005507 copper ion binding, 0009055 electron carrier activity; PDB: 1UAT_A 1CUO_A 1PLC_A 4PCY_A 3PCY_A 1PND_A 1PNC_A 1JXG_A 6PCY_A 1TKW_A ....
Probab=98.35 E-value=6.6e-07 Score=67.16 Aligned_cols=76 Identities=25% Similarity=0.310 Sum_probs=53.7
Q ss_pred CCceEeCCEEEEee-cCCCceEEEecccC--CCCCCCCCCC--CCCccCCC-cEEEeCCCCcEEEEcCCCCCCCCCCeEE
Q 040203 53 TKNFVVGDVLTFNF-VTNEHDVLRVPKAS--YDGCTSSNPI--GNPITTGP-TNITLDSAGEHYYICTFGWHCQAGQKLA 126 (202)
Q Consensus 53 ~~tF~vGD~LvF~y-~~~~H~V~~V~~~~--Y~~C~~s~~~--~~~~s~G~-~~v~L~~~G~~YFiC~v~~HC~~GmKl~ 126 (202)
..++++||+|.|.+ ....|||....... -..++..... ......|. ..++++++|.|.|+|. + |...||+-.
T Consensus 18 ~i~V~~G~tV~~~n~~~~~Hnv~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~tF~~~G~y~y~C~-P-H~~~GM~G~ 95 (99)
T PF00127_consen 18 EITVKAGDTVTFVNNDSMPHNVVFVADGMPAGADSDYVPPGDSSPLLAPGETYSVTFTKPGTYEYYCT-P-HYEAGMVGT 95 (99)
T ss_dssp EEEEETTEEEEEEEESSSSBEEEEETTSSHTTGGHCHHSTTCEEEEBSTTEEEEEEEESSEEEEEEET-T-TGGTTSEEE
T ss_pred EEEECCCCEEEEEECCCCCceEEEecccccccccccccCccccceecCCCCEEEEEeCCCeEEEEEcC-C-CcccCCEEE
Confidence 56899999999999 46789999986221 1111111110 01233444 4888889999999999 7 999999999
Q ss_pred EEec
Q 040203 127 ITVS 130 (202)
Q Consensus 127 I~V~ 130 (202)
|.|.
T Consensus 96 i~V~ 99 (99)
T PF00127_consen 96 IIVE 99 (99)
T ss_dssp EEEE
T ss_pred EEEC
Confidence 9984
No 5
>TIGR02656 cyanin_plasto plastocyanin. Members of this family are plastocyanin, a blue copper protein related to pseudoazurin, halocyanin, amicyanin, etc. This protein, located in the thylakoid luman, performs electron transport to photosystem I in Cyanobacteria and chloroplasts.
Probab=98.33 E-value=4e-06 Score=63.04 Aligned_cols=75 Identities=21% Similarity=0.195 Sum_probs=50.9
Q ss_pred CCceEeCCEEEEeecC-CCceEEEecccC-----CCCCCCCCCCCCCccCCC-cEEEeCCCCcEEEEcCCCCCCCCCCeE
Q 040203 53 TKNFVVGDVLTFNFVT-NEHDVLRVPKAS-----YDGCTSSNPIGNPITTGP-TNITLDSAGEHYYICTFGWHCQAGQKL 125 (202)
Q Consensus 53 ~~tF~vGD~LvF~y~~-~~H~V~~V~~~~-----Y~~C~~s~~~~~~~s~G~-~~v~L~~~G~~YFiC~v~~HC~~GmKl 125 (202)
..++++||+|.|.... ..|||+..+... ........-. .....|. ..++++.+|.|.|+|. +|++.||+-
T Consensus 18 ~i~v~~G~~V~~~N~~~~~H~~~~~~~~~~~~~~~~~~~~~~~~-~~~~pG~t~~~tF~~~G~y~y~C~--~H~~aGM~G 94 (99)
T TIGR02656 18 KISIAAGDTVEWVNNKGGPHNVVFDEDAVPAGVKELAKSLSHKD-LLNSPGESYEVTFSTPGTYTFYCE--PHRGAGMVG 94 (99)
T ss_pred EEEECCCCEEEEEECCCCCceEEECCCCCccchhhhcccccccc-cccCCCCEEEEEeCCCEEEEEEcC--CccccCCEE
Confidence 5699999999998643 579998653210 0001110000 1123344 5888999999999999 899999999
Q ss_pred EEEec
Q 040203 126 AITVS 130 (202)
Q Consensus 126 ~I~V~ 130 (202)
.|.|.
T Consensus 95 ~I~V~ 99 (99)
T TIGR02656 95 KITVE 99 (99)
T ss_pred EEEEC
Confidence 99884
No 6
>TIGR03102 halo_cynanin halocyanin domain. Halocyanins are blue (type I) copper redox proteins found in halophilic archaea such as Natronobacterium pharaonis. This model represents a domain duplicated in some halocyanins, while appearing once in others. This domain includes the characteristic copper ligand residues. This family does not include plastocyanins, and does not include certain divergent paralogs of halocyanin.
Probab=98.21 E-value=1.2e-05 Score=63.03 Aligned_cols=88 Identities=19% Similarity=0.300 Sum_probs=61.4
Q ss_pred cceEEEec--CCC-CCCCCCCCCCcchhhhccCCceEeCCEEEEeecC--CCceEEEecccCCCCCCCCCCCCCCccCC-
Q 040203 24 AQTVHVVG--DSM-GWSIPMSGGAGAYVAWAATKNFVVGDVLTFNFVT--NEHDVLRVPKASYDGCTSSNPIGNPITTG- 97 (202)
Q Consensus 24 ~a~~~~VG--g~~-GW~~~~~~~~~~Y~~WAs~~tF~vGD~LvF~y~~--~~H~V~~V~~~~Y~~C~~s~~~~~~~s~G- 97 (202)
...+..|| +.. +..+.| +..++++||+|.|+++. ..|||.-.....|+. .. .....|
T Consensus 22 ~~~~v~~G~~~~~g~~~F~P-----------~~ltV~~GdTVtw~~~~d~~~HnV~s~~~~~f~s----~~--~~~~~G~ 84 (115)
T TIGR03102 22 DEVTVDVGAEANGGGFAFDP-----------PAIRVDPGTTVVWEWTGEGGGHNVVSDGDGDLDE----SE--RVSEEGT 84 (115)
T ss_pred ceEEEEecccCCCCceeEeC-----------CEEEECCCCEEEEEECCCCCCEEEEECCCCCccc----cc--cccCCCC
Confidence 44567788 222 355542 25699999999999864 579998543333442 11 112234
Q ss_pred CcEEEeCCCCcEEEEcCCCCCCCCCCeEEEEec
Q 040203 98 PTNITLDSAGEHYYICTFGWHCQAGQKLAITVS 130 (202)
Q Consensus 98 ~~~v~L~~~G~~YFiC~v~~HC~~GmKl~I~V~ 130 (202)
...++|+++|.|-|+|. .|=..|||-.|.|.
T Consensus 85 t~s~Tf~~~G~Y~Y~C~--pH~~~gM~G~I~V~ 115 (115)
T TIGR03102 85 TYEHTFEEPGIYLYVCV--PHEALGMKGAVVVE 115 (115)
T ss_pred EEEEEecCCcEEEEEcc--CCCCCCCEEEEEEC
Confidence 46899999999999999 58888999999984
No 7
>COG3794 PetE Plastocyanin [Energy production and conversion]
Probab=98.19 E-value=1.5e-05 Score=63.65 Aligned_cols=70 Identities=27% Similarity=0.337 Sum_probs=53.4
Q ss_pred cCCceEeCCEEEEeecCC-CceEEEecccCCCCCCCCCCCCCCccCC---CcEEEeCCCCcEEEEcCCCCCCCCCCeEEE
Q 040203 52 ATKNFVVGDVLTFNFVTN-EHDVLRVPKASYDGCTSSNPIGNPITTG---PTNITLDSAGEHYYICTFGWHCQAGQKLAI 127 (202)
Q Consensus 52 s~~tF~vGD~LvF~y~~~-~H~V~~V~~~~Y~~C~~s~~~~~~~s~G---~~~v~L~~~G~~YFiC~v~~HC~~GmKl~I 127 (202)
+..++++||++.|.+... .|||.-+.... .- .. ..+..+ ...++++++|.|.|+|. .|=..|||-.|
T Consensus 54 A~v~v~pGDTVtw~~~d~~~Hnv~~~~~~~-----~~-g~-~~~~~~~~~s~~~Tfe~~G~Y~Y~C~--PH~~~gM~G~I 124 (128)
T COG3794 54 AEVTVKPGDTVTWVNTDSVGHNVTAVGGMD-----PE-GS-GTLKAGINESFTHTFETPGEYTYYCT--PHPGMGMKGKI 124 (128)
T ss_pred cEEEECCCCEEEEEECCCCCceEEEeCCCC-----cc-cc-cccccCCCcceEEEecccceEEEEec--cCCCCCcEEEE
Confidence 467999999999999876 89999886441 10 11 112222 25888999999999998 59999999999
Q ss_pred Eec
Q 040203 128 TVS 130 (202)
Q Consensus 128 ~V~ 130 (202)
.|.
T Consensus 125 vV~ 127 (128)
T COG3794 125 VVG 127 (128)
T ss_pred EeC
Confidence 986
No 8
>TIGR02375 pseudoazurin pseudoazurin. Pseudoazurin, also called cupredoxin, is a small, blue periplasmic protein with a single bound copper atom. Pseudoazurin is related plastocyanins. Several examples of pseudoazurin are encoded by a neighboring gene for, or have been shown to transfer electrons to, copper-containing nitrite reductases (TIGR02376) of the same species.
Probab=98.17 E-value=1.1e-05 Score=63.22 Aligned_cols=75 Identities=21% Similarity=0.221 Sum_probs=54.7
Q ss_pred cCCceEeCCEEEEeecCCCceEEEecccCCCCCCCCCCCCCCccCCCcEEEeCCCCcEEEEcCCCCCCCCCCeEEEEecC
Q 040203 52 ATKNFVVGDVLTFNFVTNEHDVLRVPKASYDGCTSSNPIGNPITTGPTNITLDSAGEHYYICTFGWHCQAGQKLAITVSA 131 (202)
Q Consensus 52 s~~tF~vGD~LvF~y~~~~H~V~~V~~~~Y~~C~~s~~~~~~~s~G~~~v~L~~~G~~YFiC~v~~HC~~GmKl~I~V~~ 131 (202)
+..++++||+|.|.+....|||..+.....+. .+.. ..-.+....++++++|.|-|+|. .|=..||+-.|.|..
T Consensus 15 ~~v~V~~GdTV~f~n~d~~Hnv~~~~~~~p~g---~~~~-~s~~g~~~~~tF~~~G~Y~Y~C~--pH~~~GM~G~V~Vg~ 88 (116)
T TIGR02375 15 AYIRAAPGDTVTFVPTDKGHNVETIKGMIPEG---AEAF-KSKINEEYTVTVTEEGVYGVKCT--PHYGMGMVALIQVGD 88 (116)
T ss_pred CEEEECCCCEEEEEECCCCeeEEEccCCCcCC---cccc-cCCCCCEEEEEeCCCEEEEEEcC--CCccCCCEEEEEECC
Confidence 35689999999999987789998653211111 1111 11113336899999999999999 799999999999988
Q ss_pred C
Q 040203 132 T 132 (202)
Q Consensus 132 ~ 132 (202)
+
T Consensus 89 ~ 89 (116)
T TIGR02375 89 P 89 (116)
T ss_pred C
Confidence 4
No 9
>TIGR02657 amicyanin amicyanin. Members of this family are amicyanin, a type I blue copper protein that accepts electrons from the tryptophan tryptophylquinone (TTQ) cofactor of the methylamine dehydrogenase light chain and then transfers them to the heme group of cytochrome c-551i. Amicyanin, methylamine dehydrogenase, and cytochrome c-551i are periplasmic and form a complex. This system has been studied primarily in Paracoccus denitrificans and Methylobacterium extorquens. Related type I blue copper proteins include plastocyanin, pseudoazurin, halocyanin, etc.
Probab=97.36 E-value=0.0013 Score=47.84 Aligned_cols=70 Identities=21% Similarity=0.227 Sum_probs=47.9
Q ss_pred CCceEeCCEEEEeecC-CCceEEEecccCCCCCCCCCCCCCCccCCC-cEEEeCCCCcEEEEcCCCCCCCCCCeEEEEec
Q 040203 53 TKNFVVGDVLTFNFVT-NEHDVLRVPKASYDGCTSSNPIGNPITTGP-TNITLDSAGEHYYICTFGWHCQAGQKLAITVS 130 (202)
Q Consensus 53 ~~tF~vGD~LvF~y~~-~~H~V~~V~~~~Y~~C~~s~~~~~~~s~G~-~~v~L~~~G~~YFiC~v~~HC~~GmKl~I~V~ 130 (202)
..++++||+|.|.... ..|||...+.. ...=+...+. ...|. ..++++++|.|-|.|.... .||-.|.|.
T Consensus 12 ~i~v~~GdtVt~~N~d~~~Hnv~~~~g~-~~~~~~~~~~---~~~g~~~~~tf~~~G~y~y~C~~Hp----~M~G~v~V~ 83 (83)
T TIGR02657 12 ELHVKVGDTVTWINREAMPHNVHFVAGV-LGEAALKGPM---MKKEQAYSLTFTEAGTYDYHCTPHP----FMRGKVVVE 83 (83)
T ss_pred EEEECCCCEEEEEECCCCCccEEecCCC-Cccccccccc---cCCCCEEEEECCCCEEEEEEcCCCC----CCeEEEEEC
Confidence 4688999999998864 47999865422 1111111221 23343 5899999999999999744 499998874
No 10
>TIGR03095 rusti_cyanin rusticyanin. Rusticyanin is a blue copper protein, described in an obligate acidophilic chemolithoautroph, Acidithiobacillus ferrooxidans, as an electron transfer protein. It can constitute up to 5 percent of protein in cells grown on Fe(II) and is thought to be part of an electron chain for Fe(II) oxidation, with two c-type cytochromes, an aa3-type cytochrome oxidase, and 02 as terminal electron acceptor. It is rather closely related to sulfocyanin (TIGR03094).
Probab=97.34 E-value=0.00097 Score=54.14 Aligned_cols=72 Identities=22% Similarity=0.391 Sum_probs=49.4
Q ss_pred ceEeCCEEEEeecCC----CceEEEeccc-CCC------------CCCCCCCCCCCccCC-----CcEEEeCCCCcEEEE
Q 040203 55 NFVVGDVLTFNFVTN----EHDVLRVPKA-SYD------------GCTSSNPIGNPITTG-----PTNITLDSAGEHYYI 112 (202)
Q Consensus 55 tF~vGD~LvF~y~~~----~H~V~~V~~~-~Y~------------~C~~s~~~~~~~s~G-----~~~v~L~~~G~~YFi 112 (202)
.++.||.|.|...+. .|+.....+. .+. .|....+ ..+| ..+++++++|.|||.
T Consensus 55 ~v~~Gd~V~v~v~N~~~~~~H~~~I~~~g~~~~~~p~mdG~~~~~~~~i~p~----~~~g~~~~~~~tf~f~~aGtywyh 130 (148)
T TIGR03095 55 VIPEGVTVHFTVINTDTDSGHNFDISKRGPPYPYMPGMDGLGFVAGTGFLPP----PKSGKFGYTDFTYHFSTAGTYWYL 130 (148)
T ss_pred EEcCCCEEEEEEEeCCCCccccEEeecCCCccccccccCCCCccccCcccCC----CCCCccceeEEEEECCCCeEEEEE
Confidence 568999999988754 5777665421 121 1211111 1123 457888899999999
Q ss_pred cCCCCCCCCCCeEEEEec
Q 040203 113 CTFGWHCQAGQKLAITVS 130 (202)
Q Consensus 113 C~v~~HC~~GmKl~I~V~ 130 (202)
|.+++|=+.||+-.|.|.
T Consensus 131 C~~pgH~~~GM~G~iiV~ 148 (148)
T TIGR03095 131 CTYPGHAENGMYGKIVVK 148 (148)
T ss_pred cCChhHHHCCCEEEEEEC
Confidence 999999999998888773
No 11
>PF06525 SoxE: Sulfocyanin (SoxE); InterPro: IPR010532 Members of this family are blue-copper redox proteins designated sulfocyanin, from the archaeal genera Sulfolobus, Ferroplasma, and Picrophilus. The most closely related proteins characterised as functionally different are the rusticyanins.
Probab=96.82 E-value=0.0075 Score=51.43 Aligned_cols=77 Identities=21% Similarity=0.307 Sum_probs=48.7
Q ss_pred eEeCCEEEEeecCC---CceEEEec-ccCCCCCCCC---CCCC--------C----CccCCCcEE-Ee-C-CCCcEEEEc
Q 040203 56 FVVGDVLTFNFVTN---EHDVLRVP-KASYDGCTSS---NPIG--------N----PITTGPTNI-TL-D-SAGEHYYIC 113 (202)
Q Consensus 56 F~vGD~LvF~y~~~---~H~V~~V~-~~~Y~~C~~s---~~~~--------~----~~s~G~~~v-~L-~-~~G~~YFiC 113 (202)
+-.|-.+.|+|.+. .|+++.|. ...+..|..- +.+. . -...|.... .+ + .+|.||++|
T Consensus 90 VPAGw~V~i~f~N~~~l~Hnl~iv~~~~~~p~~~~i~~DgkIl~~~G~s~~~~~~~GI~~G~s~~~~~~~l~aG~YwlvC 169 (196)
T PF06525_consen 90 VPAGWNVQITFTNQESLPHNLVIVQNDTPTPNNPPISSDGKILLYVGASPGNYTSNGISSGQSASGVYNDLPAGYYWLVC 169 (196)
T ss_pred EcCCCEEEEEEEcCCCCCeeEEEEeCCCCCCCccccCCCCceeeeccCCCCccccCCccCCceeeEEEccCCCceEEEEc
Confidence 35687888888653 59998883 2334444221 1110 0 011333321 22 3 589999999
Q ss_pred CCCCCCCCCCeEEEEecCC
Q 040203 114 TFGWHCQAGQKLAITVSAT 132 (202)
Q Consensus 114 ~v~~HC~~GmKl~I~V~~~ 132 (202)
++++|-+.||-..+.|.+.
T Consensus 170 ~ipGHA~sGMw~~LiVs~~ 188 (196)
T PF06525_consen 170 GIPGHAESGMWGVLIVSSN 188 (196)
T ss_pred cCCChhhcCCEEEEEEecC
Confidence 9999999999999888764
No 12
>KOG3858 consensus Ephrin, ligand for Eph receptor tyrosine kinase [Signal transduction mechanisms]
Probab=95.74 E-value=0.21 Score=43.75 Aligned_cols=78 Identities=28% Similarity=0.437 Sum_probs=47.3
Q ss_pred ceEeCCEEEEe---ecCC------CceEEEecccCCCCCCC-CCCCCCCc------------------cCCCcEEEeCCC
Q 040203 55 NFVVGDVLTFN---FVTN------EHDVLRVPKASYDGCTS-SNPIGNPI------------------TTGPTNITLDSA 106 (202)
Q Consensus 55 tF~vGD~LvF~---y~~~------~H~V~~V~~~~Y~~C~~-s~~~~~~~------------------s~G~~~v~L~~~ 106 (202)
.+++||.|-+- |+.+ +.-|++|++++|+.|+. +.+. ..+ +--..-+.+ +|
T Consensus 46 ~v~igD~ldIiCP~~e~~~~~~~E~yilYmV~~~~y~~C~~~s~~~-~~~~C~rP~~~~kfsikFq~ftP~p~G~EF-~p 123 (233)
T KOG3858|consen 46 YVQIGDYLDIICPHYEEGGPEGYEYYILYMVSEEEYDLCELRSKPF-KRWECNRPSTPLKFSIKFQRFTPFPLGFEF-QP 123 (233)
T ss_pred EeccCCEEEEECCCCCCCCCCcceEEEEEEeChHHhhhhhccCCCc-EEEEecCCCcchhhhhhheecCCCCCCccc-cC
Confidence 55779999875 4322 13468899999999996 3332 111 111111122 36
Q ss_pred C-cEEEEcCC-----------CCCCCC-CCeEEEEecCCCC
Q 040203 107 G-EHYYICTF-----------GWHCQA-GQKLAITVSATPG 134 (202)
Q Consensus 107 G-~~YFiC~v-----------~~HC~~-GmKl~I~V~~~~~ 134 (202)
| +||||++- ++-|.. .||+.+.|...+.
T Consensus 124 G~~YY~IStStg~~~g~~~~~ggvc~~~~mk~~~~V~~~~~ 164 (233)
T KOG3858|consen 124 GHTYYYISTSTGDAEGLCNLRGGVCVTRNMKLLMKVGQSPR 164 (233)
T ss_pred CCeEEEEeCCCccccccchhhCCEeccCCceEEEEecccCC
Confidence 7 68888862 355654 5999999988544
No 13
>PF00812 Ephrin: Ephrin; InterPro: IPR001799 Ephrins are a family of proteins [] that are ligands of class V (EPH-related) receptor protein-tyrosine kinases (see IPR001426 from INTERPRO). These receptors and their ligands have been implicated in regulating neuronal axon guidance and in patterning of the developing nervous system and may also serve a patterning and compartmentalisation role outside of the nervous system as well. Ephrins are membrane-attached proteins of 205 to 340 residues. Attachment appears to be crucial for their normal function. Type-A ephrins are linked to the membrane via a glycosylphosphatidylinositol (GPI)-linkage, while type-B ephrins are type-I membrane proteins.; GO: 0016020 membrane; PDB: 3HEI_P 3CZU_B 3MBW_B 1KGY_E 1IKO_P 2WO3_B 2I85_A 2VSK_B 3GXU_B 2VSM_B ....
Probab=95.31 E-value=0.0094 Score=48.54 Aligned_cols=76 Identities=28% Similarity=0.434 Sum_probs=46.2
Q ss_pred CceEeCCEEEEeec---CC--------CceEEEecccCCCCCCCCC-CCCCCc-------cCCCcEEEe-----------
Q 040203 54 KNFVVGDVLTFNFV---TN--------EHDVLRVPKASYDGCTSSN-PIGNPI-------TTGPTNITL----------- 103 (202)
Q Consensus 54 ~tF~vGD~LvF~y~---~~--------~H~V~~V~~~~Y~~C~~s~-~~~~~~-------s~G~~~v~L----------- 103 (202)
..+++||.|-|--. .. ...+++|++++|+.|+... +. .++ ..|+.+|++
T Consensus 24 i~V~i~D~ldIiCP~~~~~~~~~~~~E~~~lY~Vs~~~y~~C~~~~~~~-~l~~C~~P~~~~~~~kft~kFq~fSP~p~G 102 (145)
T PF00812_consen 24 IEVRIGDYLDIICPHYEPGGPPPEEYEYYILYMVSEEGYESCSLTSRPR-LLWECDRPEAPHGPKKFTIKFQEFSPFPLG 102 (145)
T ss_dssp EEE-TTEEEEEEE--SSSSSSSCSSS-BEEEEEE-HHHHHHTBSSTSEE-EEEEE-TTTSTTSSEEEEEESSSS-SSTTS
T ss_pred EEecCCCEEEEECCCCCCCCCCCCCceEEEEEEEcHHHhcccCCCCCCc-EEEEeCCCCCCCCCcEEEEEEEECCCCCCC
Confidence 37789999999643 22 3578899999999999632 21 111 124444432
Q ss_pred --CCCC-cEEEEcCC-----------CCCCCC-CCeEEEEec
Q 040203 104 --DSAG-EHYYICTF-----------GWHCQA-GQKLAITVS 130 (202)
Q Consensus 104 --~~~G-~~YFiC~v-----------~~HC~~-GmKl~I~V~ 130 (202)
=++| .||||++- +|-|.. .|||.|.|.
T Consensus 103 ~EF~pG~~YY~ISts~g~~~g~~~~~gG~C~~~~mkl~~~v~ 144 (145)
T PF00812_consen 103 LEFQPGHDYYYISTSTGTQEGLDNRRGGLCLSHNMKLRIKVG 144 (145)
T ss_dssp SS--TTEEEEEEEEESSSSTTTTSSBSCHHHEEEEEEEEECT
T ss_pred eeecCCCeEEEEEccCCCCCCcccccccccCcCeeEEEEecC
Confidence 1357 68899862 334774 689999885
No 14
>PF13473 Cupredoxin_1: Cupredoxin-like domain; PDB: 1IBZ_D 1IC0_E 1IBY_D.
Probab=94.49 E-value=0.014 Score=43.72 Aligned_cols=63 Identities=21% Similarity=0.303 Sum_probs=29.8
Q ss_pred CCceEeCCEEEEeecC---CCceEEEecccCCCCCCCCCCCCCCccCCC-cEEEe--CCCCcEEEEcCCCCCCCCCCeEE
Q 040203 53 TKNFVVGDVLTFNFVT---NEHDVLRVPKASYDGCTSSNPIGNPITTGP-TNITL--DSAGEHYYICTFGWHCQAGQKLA 126 (202)
Q Consensus 53 ~~tF~vGD~LvF~y~~---~~H~V~~V~~~~Y~~C~~s~~~~~~~s~G~-~~v~L--~~~G~~YFiC~v~~HC~~GmKl~ 126 (202)
..+++.|+.+.+.+.+ ..|++..-. . +.. .....|. ..+++ .++|.|=|+|++..+ ||-.
T Consensus 36 ~i~v~~G~~v~l~~~N~~~~~h~~~i~~-~--------~~~-~~l~~g~~~~~~f~~~~~G~y~~~C~~~~~----m~G~ 101 (104)
T PF13473_consen 36 TITVKAGQPVTLTFTNNDSRPHEFVIPD-L--------GIS-KVLPPGETATVTFTPLKPGEYEFYCTMHPN----MKGT 101 (104)
T ss_dssp EEEEETTCEEEEEEEE-SSS-EEEEEGG-G--------TEE-EEE-TT-EEEEEEEE-S-EEEEEB-SSS-T----TB--
T ss_pred EEEEcCCCeEEEEEEECCCCcEEEEECC-C--------ceE-EEECCCCEEEEEEcCCCCEEEEEEcCCCCc----ceec
Confidence 6699999955454432 456664322 0 000 1223344 35555 899999999997553 6655
Q ss_pred EEe
Q 040203 127 ITV 129 (202)
Q Consensus 127 I~V 129 (202)
|.|
T Consensus 102 liV 104 (104)
T PF13473_consen 102 LIV 104 (104)
T ss_dssp ---
T ss_pred ccC
Confidence 554
No 15
>TIGR03094 sulfo_cyanin sulfocyanin. Members of this family are blue-copper redox proteins designated sulfocyanin, from the archaeal genera Sulfolobus, Ferroplasma, and Picrophilus. The most closely related proteins characterized as functionally different are the rustacyanins.
Probab=94.32 E-value=0.042 Score=46.64 Aligned_cols=29 Identities=28% Similarity=0.503 Sum_probs=25.4
Q ss_pred CCCCcEEEEcCCCCCCCCCCeEEEEecCC
Q 040203 104 DSAGEHYYICTFGWHCQAGQKLAITVSAT 132 (202)
Q Consensus 104 ~~~G~~YFiC~v~~HC~~GmKl~I~V~~~ 132 (202)
.++|.||++|+++||-+.||-..+.|.+.
T Consensus 159 ~~~G~YwlvCgipGHAesGMw~~lIVSs~ 187 (195)
T TIGR03094 159 TSAGKYWLVCGITGHAESGMWAVVIVSSN 187 (195)
T ss_pred CCCeeEEEEcccCChhhcCcEEEEEEecC
Confidence 37999999999999999999888877663
No 16
>COG4454 Uncharacterized copper-binding protein [Inorganic ion transport and metabolism]
Probab=93.95 E-value=0.088 Score=43.52 Aligned_cols=80 Identities=20% Similarity=0.286 Sum_probs=50.9
Q ss_pred ccCCceEeCCEEEEeecCC---CceEEEe--c--ccCCCCC--------CCCCCC-CCCccCCCcEEEeCCCCcEEEEcC
Q 040203 51 AATKNFVVGDVLTFNFVTN---EHDVLRV--P--KASYDGC--------TSSNPI-GNPITTGPTNITLDSAGEHYYICT 114 (202)
Q Consensus 51 As~~tF~vGD~LvF~y~~~---~H~V~~V--~--~~~Y~~C--------~~s~~~-~~~~s~G~~~v~L~~~G~~YFiC~ 114 (202)
.+...++.|.+++|.-.+. .|....- . .+-|..= +..+.+ ...-.++.-+|.++++|.|=|+|.
T Consensus 62 p~~~~v~aG~tv~~v~~n~~el~hef~~~~~~~~~~~~~~~~~~~Dme~d~~~~v~L~PG~s~elvv~ft~~g~ye~~C~ 141 (158)
T COG4454 62 PSSFEVKAGETVRFVLKNEGELKHEFTMDAPDKNLEHVTHMILADDMEHDDPNTVTLAPGKSGELVVVFTGAGKYEFACN 141 (158)
T ss_pred CCcccccCCcEEeeeecCcccceEEEeccCccccchhHHHhhhCCccccCCcceeEeCCCCcEEEEEEecCCccEEEEec
Confidence 3567889999999865432 3554432 0 0111110 111111 011223445888999999999999
Q ss_pred CCCCCCCCCeEEEEec
Q 040203 115 FGWHCQAGQKLAITVS 130 (202)
Q Consensus 115 v~~HC~~GmKl~I~V~ 130 (202)
+++|-+.||.-.|+|.
T Consensus 142 iPGHy~AGM~g~itV~ 157 (158)
T COG4454 142 IPGHYEAGMVGEITVS 157 (158)
T ss_pred CCCcccCCcEEEEEeC
Confidence 9999999999999986
No 17
>TIGR03096 nitroso_cyanin nitrosocyanin. Nitrosocyanin, as described from the obligate chemolithoautotroph Nitrosomonas europaea, is a red copper protein of unknown function with sequence similarity to a number of blue copper redox proteins.
Probab=93.50 E-value=0.12 Score=41.75 Aligned_cols=57 Identities=19% Similarity=0.253 Sum_probs=36.0
Q ss_pred cCCceEeCCEEEEeecCC---CceEEEecccCCCCCCCCCCCCCCccCCCc---EEEeCCCCcEEEEcCCCCCCC
Q 040203 52 ATKNFVVGDVLTFNFVTN---EHDVLRVPKASYDGCTSSNPIGNPITTGPT---NITLDSAGEHYYICTFGWHCQ 120 (202)
Q Consensus 52 s~~tF~vGD~LvF~y~~~---~H~V~~V~~~~Y~~C~~s~~~~~~~s~G~~---~v~L~~~G~~YFiC~v~~HC~ 120 (202)
+..+++.||.+.+.+.+. .|.+..- +|. .. .....|.. .++.+++|.|.|+|+. ||.
T Consensus 61 ~~I~VkaGD~Vtl~vtN~d~~~H~f~i~---~~g---is----~~I~pGet~TitF~adKpG~Y~y~C~~--HP~ 123 (135)
T TIGR03096 61 EALVVKKGTPVKVTVENKSPISEGFSID---AYG---IS----EVIKAGETKTISFKADKAGAFTIWCQL--HPK 123 (135)
T ss_pred CEEEECCCCEEEEEEEeCCCCccceEEC---CCC---cc----eEECCCCeEEEEEECCCCEEEEEeCCC--CCh
Confidence 456889999998887642 3554432 121 11 12233443 5667999999999996 664
No 18
>TIGR02695 azurin azurin. Azurin is a blue copper-binding protein in the plastocyanin/azurin family (see Pfam model pfam00127). It serves as a redox partner to enzymes such as nitrite reductase or arsenite oxidase. The most closely related copper-binding proteins to this family are auracyanins, as in Chloroflexus aurantiacus, which have similar redox activities.
Probab=92.27 E-value=1.4 Score=35.20 Aligned_cols=29 Identities=34% Similarity=0.567 Sum_probs=21.9
Q ss_pred cEEEeC----CCCc-EEEEcCCCCCCCCCCeEEEE
Q 040203 99 TNITLD----SAGE-HYYICTFGWHCQAGQKLAIT 128 (202)
Q Consensus 99 ~~v~L~----~~G~-~YFiC~v~~HC~~GmKl~I~ 128 (202)
+.|+++ ++|. |=|+|+++||=. .||-.+.
T Consensus 91 ~svtF~~~~l~~g~~Y~f~CSFPGH~~-~MkG~l~ 124 (125)
T TIGR02695 91 TSVTFDVSKLSAGEDYTFFCSFPGHWA-MMRGTVK 124 (125)
T ss_pred EEEEEECCCCCCCCcceEEEcCCCcHH-hceEEEe
Confidence 566665 4675 889999999986 6886654
No 19
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=91.97 E-value=0.1 Score=39.65 Aligned_cols=28 Identities=21% Similarity=0.156 Sum_probs=17.1
Q ss_pred CcchhHHHHHHHHHHHHHhhhcccceEE
Q 040203 1 MEKFVSMAFVGLIGAVLLMECAEAQTVH 28 (202)
Q Consensus 1 Ma~~~~~~~~~~~~~~~~l~~~a~a~~~ 28 (202)
|+++..++|.|++++++|+.+.+++++-
T Consensus 1 MaSK~~llL~l~LA~lLlisSevaa~~~ 28 (95)
T PF07172_consen 1 MASKAFLLLGLLLAALLLISSEVAAREL 28 (95)
T ss_pred CchhHHHHHHHHHHHHHHHHhhhhhHHh
Confidence 9988755555555555566655555433
No 20
>PLN02354 copper ion binding / oxidoreductase
Probab=90.12 E-value=3.3 Score=40.31 Aligned_cols=75 Identities=23% Similarity=0.285 Sum_probs=48.3
Q ss_pred CceEeCCEEEEeecCCC--------ceEEEecccCCC-----CCCCCCCCCCCccCCCcEEEe-CCCCcEEEEcCCCCCC
Q 040203 54 KNFVVGDVLTFNFVTNE--------HDVLRVPKASYD-----GCTSSNPIGNPITTGPTNITL-DSAGEHYYICTFGWHC 119 (202)
Q Consensus 54 ~tF~vGD~LvF~y~~~~--------H~V~~V~~~~Y~-----~C~~s~~~~~~~s~G~~~v~L-~~~G~~YFiC~v~~HC 119 (202)
..++.||+|+.+..+.. |-+.|-....+| .| ++ ..-.+=...|++ +++|+|||=+....+-
T Consensus 60 I~~~~GD~v~V~v~N~l~~~ttiHWHGi~q~~~~~~DGv~~TQc----pI-~PG~sf~Y~F~~~~q~GT~WYHsH~~~Q~ 134 (552)
T PLN02354 60 INSTSNNNIVINVFNNLDEPFLLTWSGIQQRKNSWQDGVPGTNC----PI-PPGTNFTYHFQPKDQIGSYFYYPSTGMHR 134 (552)
T ss_pred EEEeCCCEEEEEEEECCCCCcccccccccCCCCcccCCCcCCcC----CC-CCCCcEEEEEEeCCCCcceEEecCcccee
Confidence 47799999998876542 555553221122 24 22 111111136776 4789999999988888
Q ss_pred CCCCeEEEEecCCC
Q 040203 120 QAGQKLAITVSATP 133 (202)
Q Consensus 120 ~~GmKl~I~V~~~~ 133 (202)
..||.-.|.|..+.
T Consensus 135 ~~Gl~G~lII~~~~ 148 (552)
T PLN02354 135 AAGGFGGLRVNSRL 148 (552)
T ss_pred cCCccceEEEcCCc
Confidence 88998888887643
No 21
>TIGR02376 Cu_nitrite_red nitrite reductase, copper-containing. This family consists of copper-type nitrite reductase. It reduces nitrite to nitric oxide, the first step in denitrification.
Probab=87.67 E-value=1.5 Score=39.54 Aligned_cols=75 Identities=19% Similarity=0.322 Sum_probs=47.7
Q ss_pred CceEeCCEEEEeecCC-----CceEEEecccCCCCCCCCCCCCCCccCCC---cEEEeCCCCcEEEEcCC----CCCCCC
Q 040203 54 KNFVVGDVLTFNFVTN-----EHDVLRVPKASYDGCTSSNPIGNPITTGP---TNITLDSAGEHYYICTF----GWHCQA 121 (202)
Q Consensus 54 ~tF~vGD~LvF~y~~~-----~H~V~~V~~~~Y~~C~~s~~~~~~~s~G~---~~v~L~~~G~~YFiC~v----~~HC~~ 121 (202)
..++.||.|++++.+. .|++..=-.... +..... .....|. ..|+++.+|+|||-|.. ..|=..
T Consensus 61 irv~~Gd~v~v~v~N~~~~~~~h~~h~H~~~~~---dg~~~~-~~I~PG~t~ty~F~~~~~Gty~YH~H~~~~~~~q~~~ 136 (311)
T TIGR02376 61 IRVHEGDYVELTLINPPTNTMPHNVDFHAATGA---LGGAAL-TQVNPGETATLRFKATRPGAFVYHCAPPGMVPWHVVS 136 (311)
T ss_pred EEEECCCEEEEEEEeCCCCCCceeeeecCCCcc---CCCCcc-eeECCCCeEEEEEEcCCCEEEEEEcCCCCchhHHhhc
Confidence 4789999999888764 466543110000 000111 1123343 37778889999999995 347788
Q ss_pred CCeEEEEecCC
Q 040203 122 GQKLAITVSAT 132 (202)
Q Consensus 122 GmKl~I~V~~~ 132 (202)
||.-.|.|...
T Consensus 137 Gl~G~liV~~~ 147 (311)
T TIGR02376 137 GMNGAIMVLPR 147 (311)
T ss_pred CcceEEEeecc
Confidence 99999999864
No 22
>PLN02604 oxidoreductase
Probab=86.63 E-value=5.6 Score=38.73 Aligned_cols=79 Identities=22% Similarity=0.300 Sum_probs=48.7
Q ss_pred CCceEeCCEEEEeecCCC----ceEE-----EecccCCCCCCCCCCCCCCccCCC---cEEEeCCCCcEEEEcCCCCCCC
Q 040203 53 TKNFVVGDVLTFNFVTNE----HDVL-----RVPKASYDGCTSSNPIGNPITTGP---TNITLDSAGEHYYICTFGWHCQ 120 (202)
Q Consensus 53 ~~tF~vGD~LvF~y~~~~----H~V~-----~V~~~~Y~~C~~s~~~~~~~s~G~---~~v~L~~~G~~YFiC~v~~HC~ 120 (202)
...++.||.|+++..+.. |++. +.....+|. ...........|. ..|+++++|+|||=|....|-.
T Consensus 56 ~i~~~~Gd~v~v~v~N~l~~~~~~iH~HG~~~~~~~~~DG--~~~~tq~~i~pg~s~~y~f~~~~~Gt~wyH~H~~~q~~ 133 (566)
T PLN02604 56 TILAQQGDTVIVELKNSLLTENVAIHWHGIRQIGTPWFDG--TEGVTQCPILPGETFTYEFVVDRPGTYLYHAHYGMQRE 133 (566)
T ss_pred cEEEECCCEEEEEEEeCCCCCCCCEEeCCCCCCCCccccC--CCccccCccCCCCeEEEEEEcCCCEEEEEeeCcHHHHh
Confidence 458899999999876542 2222 111000111 0000000122333 3777889999999999999999
Q ss_pred CCCeEEEEecCCC
Q 040203 121 AGQKLAITVSATP 133 (202)
Q Consensus 121 ~GmKl~I~V~~~~ 133 (202)
.||.-.|.|....
T Consensus 134 ~Gl~G~liV~~~~ 146 (566)
T PLN02604 134 AGLYGSIRVSLPR 146 (566)
T ss_pred CCCeEEEEEEecC
Confidence 9999999888643
No 23
>PLN00044 multi-copper oxidase-related protein; Provisional
Probab=85.48 E-value=6.9 Score=38.64 Aligned_cols=75 Identities=23% Similarity=0.191 Sum_probs=49.2
Q ss_pred CceEeCCEEEEeecCCC--------ceEEEecccC-----CCCCCCCCCCCCCccCCCcEEEe-CCCCcEEEEcCCCCCC
Q 040203 54 KNFVVGDVLTFNFVTNE--------HDVLRVPKAS-----YDGCTSSNPIGNPITTGPTNITL-DSAGEHYYICTFGWHC 119 (202)
Q Consensus 54 ~tF~vGD~LvF~y~~~~--------H~V~~V~~~~-----Y~~C~~s~~~~~~~s~G~~~v~L-~~~G~~YFiC~v~~HC 119 (202)
..++.||+|+.+..+.. |-+.|-...- +..| ++ ..-.+=...|++ +++|+|||=+.+..+-
T Consensus 62 I~~~~GD~v~V~V~N~L~~~ttIHWHGl~q~~t~w~DGv~~TQc----PI-~PG~sftY~F~~~dq~GT~WYHsH~~~Q~ 136 (596)
T PLN00044 62 LNVTTNWNLVVNVRNALDEPLLLTWHGVQQRKSAWQDGVGGTNC----AI-PAGWNWTYQFQVKDQVGSFFYAPSTALHR 136 (596)
T ss_pred EEEECCCEEEEEEEeCCCCCccEEECCccCCCCccccCCCCCcC----Cc-CCCCcEEEEEEeCCCCceeEeeccchhhh
Confidence 37799999999876542 5555432111 2234 22 111111237777 5899999999988888
Q ss_pred CCCCeEEEEecCCC
Q 040203 120 QAGQKLAITVSATP 133 (202)
Q Consensus 120 ~~GmKl~I~V~~~~ 133 (202)
..|+.-.|.|....
T Consensus 137 ~~Gl~GalII~~~~ 150 (596)
T PLN00044 137 AAGGYGAITINNRD 150 (596)
T ss_pred hCcCeeEEEEcCcc
Confidence 88999999998754
No 24
>PRK02888 nitrous-oxide reductase; Validated
Probab=83.69 E-value=4.4 Score=40.32 Aligned_cols=67 Identities=21% Similarity=0.315 Sum_probs=42.2
Q ss_pred CCceEeCCEEEEeecCC------CceEEEecccCCCCCCCCCCCCCCccCCC---cEEEeCCCCcEEEEcCCCCCCCC--
Q 040203 53 TKNFVVGDVLTFNFVTN------EHDVLRVPKASYDGCTSSNPIGNPITTGP---TNITLDSAGEHYYICTFGWHCQA-- 121 (202)
Q Consensus 53 ~~tF~vGD~LvF~y~~~------~H~V~~V~~~~Y~~C~~s~~~~~~~s~G~---~~v~L~~~G~~YFiC~v~~HC~~-- 121 (202)
...+++||.+.|...+- .|....- .|. .. .....|. ..|+.++||.|||+|+. .|..
T Consensus 556 ~i~Vk~GDeVt~~lTN~d~~~DViHGF~Ip---~~n------I~-~dv~PG~t~svtF~adkPGvy~~~Cte--fCGa~H 623 (635)
T PRK02888 556 EFTVKQGDEVTVIVTNLDKVEDLTHGFAIP---NYG------VN-MEVAPQATASVTFTADKPGVYWYYCTW--FCHALH 623 (635)
T ss_pred eEEecCCCEEEEEEEeCCcccccccceeec---ccC------cc-EEEcCCceEEEEEEcCCCEEEEEECCc--ccccCc
Confidence 46789999999998751 2333321 111 11 1112233 46777999999999996 4554
Q ss_pred -CCeEEEEecC
Q 040203 122 -GQKLAITVSA 131 (202)
Q Consensus 122 -GmKl~I~V~~ 131 (202)
+|+-.|.|..
T Consensus 624 ~~M~G~~iVep 634 (635)
T PRK02888 624 MEMRGRMLVEP 634 (635)
T ss_pred ccceEEEEEEe
Confidence 5888888754
No 25
>PF00116 COX2: Cytochrome C oxidase subunit II, periplasmic domain This family corresponds to chains b and o.; InterPro: IPR002429 Cytochrome c oxidase (1.9.3.1 from EC) [, ] is an oligomeric enzymatic complex which is a component of the respiratory chain and is involved in the transfer of electrons from cytochrome c to oxygen. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. The number of polypeptides in the complex ranges from 3-4 (prokaryotes), up to 13(mammals). Subunit 2 (CO II) transfers the electrons from cytochrome c to the catalytic subunit 1. It contains two adjacent transmembrane regions in its N terminus and the major part of the protein is exposed to the periplasmic or to the mitochondrial intermembrane space, respectively. CO II provides the substrate-binding site and contains a copper centre called Cu(A), probably the primary acceptor in cytochrome c oxidase. An exception is the corresponding subunit of the cbb3-type oxidase which lacks the copper A redox-centre. Several bacterial CO II have a C-terminal extension that contains a covalently bound haem c.; GO: 0004129 cytochrome-c oxidase activity, 0005507 copper ion binding, 0016020 membrane; PDB: 3OMN_D 3OMA_B 3OMI_D 3OM3_B 3EHB_B 1AR1_B 1QLE_B 3HB3_B 2IWK_B 2IWF_A ....
Probab=81.93 E-value=2.3 Score=33.06 Aligned_cols=65 Identities=22% Similarity=0.329 Sum_probs=39.5
Q ss_pred CCceEeCCEEEEeecCC--CceEEEecccCCCCCCCCCCCCCCccCCC---cEEEeCCCCcEEEEcCCCCCCCCC---Ce
Q 040203 53 TKNFVVGDVLTFNFVTN--EHDVLRVPKASYDGCTSSNPIGNPITTGP---TNITLDSAGEHYYICTFGWHCQAG---QK 124 (202)
Q Consensus 53 ~~tF~vGD~LvF~y~~~--~H~V~~V~~~~Y~~C~~s~~~~~~~s~G~---~~v~L~~~G~~YFiC~v~~HC~~G---mK 124 (202)
...+..|+.+.|+..+. .|+... .+...+ ...-.|. ..++.+++|.|++.|.. .|..| |+
T Consensus 47 ~l~lp~g~~v~~~ltS~DViHsf~i-p~~~~k---------~d~~PG~~~~~~~~~~~~G~y~~~C~e--~CG~gH~~M~ 114 (120)
T PF00116_consen 47 ELVLPAGQPVRFHLTSEDVIHSFWI-PELGIK---------MDAIPGRTNSVTFTPDKPGTYYGQCAE--YCGAGHSFMP 114 (120)
T ss_dssp EEEEETTSEEEEEEEESSS-EEEEE-TTCTEE---------EEEBTTCEEEEEEEESSSEEEEEEE-S--SSSTTGGG-E
T ss_pred eecccccceEeEEEEcCCccccccc-cccCcc---------cccccccceeeeeeeccCCcEEEcCcc--ccCcCcCCCe
Confidence 34668888888887642 465543 211100 0111233 46777999999999995 79987 88
Q ss_pred EEEEe
Q 040203 125 LAITV 129 (202)
Q Consensus 125 l~I~V 129 (202)
..|.|
T Consensus 115 ~~v~V 119 (120)
T PF00116_consen 115 GKVIV 119 (120)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 87776
No 26
>PF10731 Anophelin: Thrombin inhibitor from mosquito; InterPro: IPR018932 Members of this family are all inhibitors of thrombin, the peptidase that is at the end of the blood coagulation cascade and which creates the clot by cleaving fibrinogen. The interaction between thrombin and fibrinogen involves two different areas of contact - via the thrombin active site and via a second substrate-binding site known as an exosite. The inhibitor acts by blocking the exosite, rather than by interacting with the active site. The inhibitors are from mosquitoes that feed on human blood and which, by inhibiting thrombin, prevent the blood from clotting and keep it flowing.
Probab=81.86 E-value=1.4 Score=31.02 Aligned_cols=32 Identities=9% Similarity=0.099 Sum_probs=22.4
Q ss_pred CcchhHHHHHHHHHHHHHhhhcccceEEEecCCCC
Q 040203 1 MEKFVSMAFVGLIGAVLLMECAEAQTVHVVGDSMG 35 (202)
Q Consensus 1 Ma~~~~~~~~~~~~~~~~l~~~a~a~~~~VGg~~G 35 (202)
||+++..+.||+++++.+.+ +|-+|.-|++--
T Consensus 1 MA~Kl~vialLC~aLva~vQ---~APQYa~GeeP~ 32 (65)
T PF10731_consen 1 MASKLIVIALLCVALVAIVQ---SAPQYAPGEEPS 32 (65)
T ss_pred CcchhhHHHHHHHHHHHHHh---cCcccCCCCCCC
Confidence 89998777677776666544 466788887543
No 27
>PF07732 Cu-oxidase_3: Multicopper oxidase; InterPro: IPR011707 Copper is one of the most prevalent transition metals in living organisms and its biological function is intimately related to its redox properties. Since free copper is toxic, even at very low concentrations, its homeostasis in living organisms is tightly controlled by subtle molecular mechanisms. In eukaryotes, before being transported inside the cell via the high-affinity copper transporters of the CTR family, the copper (II) ion is reduced to copper (I). In blue copper proteins such as cupredoxin, the copper (I) ion form is stabilised by a constrained His2Cys coordination environment. Multicopper oxidases oxidise their substrate by accepting electrons at a mononuclear copper centre and transferring them to a trinuclear copper centre; dioxygen binds to the trinuclear centre and, following the transfer of four electrons, is reduced to two molecules of water []. There are three spectroscopically different copper centres found in multicopper oxidases: type 1 (or blue), type 2 (or normal) and type 3 (or coupled binuclear) [, ]. Multicopper oxidases consist of 2, 3 or 6 of these homologous domains, which also share homology to the cupredoxins azurin and plastocyanin. Structurally, these domains consist of a cupredoxin-like fold, a beta-sandwich consisting of 7 strands in 2 beta-sheets, arranged in a Greek-key beta-barrel []. Multicopper oxidases include: Ceruloplasmin (1.16.3.1 from EC) (ferroxidase), a 6-domain enzyme found in the serum of mammals and birds that oxidizes different inorganic and organic substances; exhibits internal sequence homology that appears to have evolved from the triplication of a Cu-binding domain similar to that of laccase and ascorbate oxidase. Laccase (1.10.3.2 from EC) (urishiol oxidase), a 3-domain enzyme found in fungi and plants, which oxidizes different phenols and diamines. CueO is a laccase found in Escherichia coli that is involved in copper-resistance []. Ascorbate oxidase (1.10.3.3 from EC), a 3-domain enzyme found in higher plants. Nitrite reductase (1.7.2.1 from EC), a 2-domain enzyme containing type-1 and type-2 copper centres [, ]. In addition to the above enzymes there are a number of other proteins that are similar to the multi-copper oxidases in terms of structure and sequence, some of which have lost the ability to bind copper. These include: copper resistance protein A (copA) from a plasmid in Pseudomonas syringae; domain A of (non-copper binding) blood coagulation factors V (Fa V) and VIII (Fa VIII) []; yeast FET3 required for ferrous iron uptake []; yeast hypothetical protein YFL041w; and the fission yeast homologue SpAC1F7.08. This entry represents multicopper oxidase type 3 (or coupled binuclear) domains. ; GO: 0005507 copper ion binding; PDB: 2QT6_B 3KW7_B 2R7E_A 3CDZ_A 1SDD_A 3G5W_D 3UAC_A 2YXV_A 3OD3_A 3NSY_A ....
Probab=80.32 E-value=1.1 Score=34.74 Aligned_cols=75 Identities=24% Similarity=0.284 Sum_probs=45.8
Q ss_pred CCceEeCCEEEEeecCC---CceEEEe----ccc-CCCC-C-CCCCCCCCCccCCC---cEEEeCC-CCcEEEEcCCCCC
Q 040203 53 TKNFVVGDVLTFNFVTN---EHDVLRV----PKA-SYDG-C-TSSNPIGNPITTGP---TNITLDS-AGEHYYICTFGWH 118 (202)
Q Consensus 53 ~~tF~vGD~LvF~y~~~---~H~V~~V----~~~-~Y~~-C-~~s~~~~~~~s~G~---~~v~L~~-~G~~YFiC~v~~H 118 (202)
...++.||.|.+++.+. .++|..= ... ..|. . ....++ ..|. ..|++++ +|.|||-|...+|
T Consensus 27 tI~v~~Gd~v~i~~~N~l~~~~siH~HG~~~~~~~~~DG~~~~~~~~i----~pG~~~~Y~~~~~~~~Gt~wYH~H~~~~ 102 (117)
T PF07732_consen 27 TIRVREGDTVRITVTNNLDEPTSIHWHGLHQPPSPWMDGVPGVTQCPI----APGESFTYEFTANQQAGTYWYHSHVHGQ 102 (117)
T ss_dssp EEEEETTEEEEEEEEEESSSGBSEEEETSBSTTGGGGSGGTTTSGSSB----STTEEEEEEEEESSCSEEEEEEECSTTH
T ss_pred EEEEEcCCeeEEEEEeccccccccccceeeeeeeeecCCcccccceeE----EeecceeeeEeeeccccceeEeeCCCch
Confidence 34789999999998753 3444321 111 0111 0 011122 2233 4788888 9999999999876
Q ss_pred CCCCCeEEEEecC
Q 040203 119 CQAGQKLAITVSA 131 (202)
Q Consensus 119 C~~GmKl~I~V~~ 131 (202)
=..||--.|.|..
T Consensus 103 ~~~GL~G~~iV~~ 115 (117)
T PF07732_consen 103 QVMGLYGAIIVEP 115 (117)
T ss_dssp HHTTEEEEEEEE-
T ss_pred hcCcCEEEEEEcC
Confidence 5589988888765
No 28
>PLN02168 copper ion binding / pectinesterase
Probab=75.07 E-value=39 Score=33.02 Aligned_cols=80 Identities=21% Similarity=0.213 Sum_probs=48.9
Q ss_pred CCceEeCCEEEEeecCCC--------ceEEEecccCCCC-CCCCCCCCCCccCCCcEEEeC-CCCcEEEEcCCCCCCCCC
Q 040203 53 TKNFVVGDVLTFNFVTNE--------HDVLRVPKASYDG-CTSSNPIGNPITTGPTNITLD-SAGEHYYICTFGWHCQAG 122 (202)
Q Consensus 53 ~~tF~vGD~LvF~y~~~~--------H~V~~V~~~~Y~~-C~~s~~~~~~~s~G~~~v~L~-~~G~~YFiC~v~~HC~~G 122 (202)
...++.||+|+.+..+.. |-+.+-.....|. ....-++ ..-.+=...|++. ++|+|||=+....+=..|
T Consensus 58 ~I~~~~GD~v~V~v~N~L~~~ttiHWHGl~~~~~~~~DGv~gtQcpI-~PG~sftY~F~~~~q~GT~WYHsH~~~Q~~~G 136 (545)
T PLN02168 58 LLNATANDVINVNIFNNLTEPFLMTWNGLQLRKNSWQDGVRGTNCPI-LPGTNWTYRFQVKDQIGSYFYFPSLLLQKAAG 136 (545)
T ss_pred cEEEECCCEEEEEEEeCCCCCccEeeCCccCCCCCCcCCCCCCcCCC-CCCCcEEEEEEeCCCCceEEEecChhhhhhCc
Confidence 348899999999887542 5555432211222 0001133 1111112477774 799999999877666779
Q ss_pred CeEEEEecCCC
Q 040203 123 QKLAITVSATP 133 (202)
Q Consensus 123 mKl~I~V~~~~ 133 (202)
+.-.|.|....
T Consensus 137 L~G~lII~~~~ 147 (545)
T PLN02168 137 GYGAIRIYNPE 147 (545)
T ss_pred ceeEEEEcCCc
Confidence 98888887644
No 29
>PRK10378 inactive ferrous ion transporter periplasmic protein EfeO; Provisional
Probab=73.39 E-value=23 Score=33.13 Aligned_cols=30 Identities=20% Similarity=0.265 Sum_probs=21.4
Q ss_pred CcEEEeCCCCcEEEEcCCCCCCCCCCeEEEEecCC
Q 040203 98 PTNITLDSAGEHYYICTFGWHCQAGQKLAITVSAT 132 (202)
Q Consensus 98 ~~~v~L~~~G~~YFiC~v~~HC~~GmKl~I~V~~~ 132 (202)
...++| +||+|-|+|+. | ..||-.|+|...
T Consensus 89 ~l~~~L-~pGtY~~~C~~--~--~~~~g~l~Vtg~ 118 (375)
T PRK10378 89 KMTANL-QPGEYDMTCGL--L--TNPKGKLIVKGE 118 (375)
T ss_pred EEEEec-CCceEEeecCc--C--CCCCceEEEeCC
Confidence 345666 69999999975 5 335777888763
No 30
>TIGR03388 ascorbase L-ascorbate oxidase, plant type. Members of this protein family are the copper-containing enzyme L-ascorbate oxidase (EC 1.10.3.3), also called ascorbase. This family is found in flowering plants, and shows greater sequence similarity to a family of laccases (EC 1.10.3.2) from plants than to other known ascorbate oxidases.
Probab=71.53 E-value=11 Score=36.45 Aligned_cols=78 Identities=18% Similarity=0.321 Sum_probs=48.9
Q ss_pred CCceEeCCEEEEeecCCC---------ceEEEecccCCCCCCCCCC-CCCCccCCC---cEEEeCCCCcEEEEcCCCCCC
Q 040203 53 TKNFVVGDVLTFNFVTNE---------HDVLRVPKASYDGCTSSNP-IGNPITTGP---TNITLDSAGEHYYICTFGWHC 119 (202)
Q Consensus 53 ~~tF~vGD~LvF~y~~~~---------H~V~~V~~~~Y~~C~~s~~-~~~~~s~G~---~~v~L~~~G~~YFiC~v~~HC 119 (202)
...++.||.|+++..+.. |.+.+.. ..|. |.... .......|. ..|+++.+|+|||-|....|-
T Consensus 33 ~i~~~~Gd~v~v~v~N~l~~~~t~iHwHGl~~~~-~~~~--DG~~~vtq~~I~PG~s~~y~f~~~~~Gt~wyH~H~~~q~ 109 (541)
T TIGR03388 33 TIRAQAGDTIVVELTNKLHTEGVVIHWHGIRQIG-TPWA--DGTAGVTQCAINPGETFIYNFVVDRPGTYFYHGHYGMQR 109 (541)
T ss_pred eEEEEcCCEEEEEEEECCCCCCccEEecCcCCcC-Cccc--CCCCccccCCcCCCCEEEEEEEcCCCEEEEEEecchHHh
Confidence 457899999999877642 2222111 1111 00000 000112333 377889999999999999999
Q ss_pred CCCCeEEEEecCCC
Q 040203 120 QAGQKLAITVSATP 133 (202)
Q Consensus 120 ~~GmKl~I~V~~~~ 133 (202)
..||.-.|.|..+.
T Consensus 110 ~~Gl~G~liV~~~~ 123 (541)
T TIGR03388 110 SAGLYGSLIVDVPD 123 (541)
T ss_pred hccceEEEEEecCC
Confidence 99999999998653
No 31
>COG1622 CyoA Heme/copper-type cytochrome/quinol oxidases, subunit 2 [Energy production and conversion]
Probab=69.16 E-value=5.4 Score=35.14 Aligned_cols=32 Identities=22% Similarity=0.387 Sum_probs=26.9
Q ss_pred cEEEeCCCCcEEEEcCCCCCCCCC---CeEEEEecCC
Q 040203 99 TNITLDSAGEHYYICTFGWHCQAG---QKLAITVSAT 132 (202)
Q Consensus 99 ~~v~L~~~G~~YFiC~v~~HC~~G---mKl~I~V~~~ 132 (202)
..++.+++|.|+.+|.. .|..| |++.|.|...
T Consensus 179 ~~~~~~~~G~Y~g~Cae--~CG~gH~~M~~~v~vvs~ 213 (247)
T COG1622 179 LWLTANKPGTYRGICAE--YCGPGHSFMRFKVIVVSQ 213 (247)
T ss_pred EEEecCCCeEEEEEcHh--hcCCCcccceEEEEEEcH
Confidence 36677899999999984 78876 9999999874
No 32
>PF02839 CBM_5_12: Carbohydrate binding domain; InterPro: IPR003610 A carbohydrate-binding module (CBM) is defined as a contiguous amino acid sequence within a carbohydrate-active enzyme with a discreet fold having carbohydrate-binding activity. A few exceptions are CBMs in cellulosomal scaffolding proteins and rare instances of independent putative CBMs. The requirement of CBMs existing as modules within larger enzymes sets this class of carbohydrate-binding protein apart from other non-catalytic sugar binding proteins such as lectins and sugar transport proteins. CBMs were previously classified as cellulose-binding domains (CBDs) based on the initial discovery of several modules that bound cellulose [, ]. However, additional modules in carbohydrate-active enzymes are continually being found that bind carbohydrates other than cellulose yet otherwise meet the CBM criteria, hence the need to reclassify these polypeptides using more inclusive terminology. Previous classification of cellulose-binding domains were based on amino acid similarity. Groupings of CBDs were called "Types" and numbered with roman numerals (e.g. Type I or Type II CBDs). In keeping with the glycoside hydrolase classification, these groupings are now called families and numbered with Arabic numerals. Families 1 to 13 are the same as Types I to XIII. For a detailed review on the structure and binding modes of CBMs see []. This entry represents CBM5 from CAZY and CBM12 from CAZY. These modules have a core structure consisting of a 3-stranded meander beta-sheet, which contain six aromatic groups that may be important for binding. CBM5/12 is found in proteins such as chitinase A1, chitinase B [], and endoglucanase Z []. The overall topology of the CBM is structurally similar to the C-terminal chitin-binding domains (ChBD) of chitinase A1 and chitinase B, however the binding mechanism for the ChBD may be different from that of the CBM [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0030246 carbohydrate binding, 0005975 carbohydrate metabolic process, 0005576 extracellular region; PDB: 1ED7_A 1W1V_A 1E15_B 1UR8_A 1E6Z_B 1E6P_A 1W1T_A 1W1P_B 1UR9_A 1E6R_A ....
Probab=68.75 E-value=2.7 Score=26.29 Aligned_cols=19 Identities=32% Similarity=0.817 Sum_probs=11.3
Q ss_pred hhhhccCCceEeCCEEEEe
Q 040203 47 YVAWAATKNFVVGDVLTFN 65 (202)
Q Consensus 47 Y~~WAs~~tF~vGD~LvF~ 65 (202)
|..|..++....||.+.|+
T Consensus 1 ~p~W~~~~~Y~~Gd~V~~~ 19 (41)
T PF02839_consen 1 YPAWDPGTTYNAGDRVSYN 19 (41)
T ss_dssp --B--TTCEE-TT-EEEET
T ss_pred CCCcCCCCEEcCCCEEEEC
Confidence 5689999999999998764
No 33
>PRK09723 putative fimbrial-like adhesin protein; Provisional
Probab=68.32 E-value=65 Score=30.74 Aligned_cols=35 Identities=17% Similarity=0.234 Sum_probs=22.8
Q ss_pred CcchhHHHHHHHHHHHHHh--hhcccceEEEecCCCC
Q 040203 1 MEKFVSMAFVGLIGAVLLM--ECAEAQTVHVVGDSMG 35 (202)
Q Consensus 1 Ma~~~~~~~~~~~~~~~~l--~~~a~a~~~~VGg~~G 35 (202)
|.+.++..++|+|++..+. ........|+||+..|
T Consensus 1 ~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~vg~~~~ 37 (421)
T PRK09723 1 MKKFFRYFLFLALCLSCYTASAGTDDNVSYIVGNYYG 37 (421)
T ss_pred ChhHHHHHHHHHHHHhhhhhhccccCceEEEEccccc
Confidence 7777777766666544332 2344578899998665
No 34
>MTH00047 COX2 cytochrome c oxidase subunit II; Provisional
Probab=67.87 E-value=7.2 Score=33.07 Aligned_cols=32 Identities=22% Similarity=0.299 Sum_probs=26.2
Q ss_pred EEEeCCCCcEEEEcCCCCCCCCC---CeEEEEecCCC
Q 040203 100 NITLDSAGEHYYICTFGWHCQAG---QKLAITVSATP 133 (202)
Q Consensus 100 ~v~L~~~G~~YFiC~v~~HC~~G---mKl~I~V~~~~ 133 (202)
.++.+++|.|+..|.. .|..| |++.|.|.++.
T Consensus 159 ~~~~~~~G~y~g~C~e--~CG~~H~~M~~~v~v~~~~ 193 (194)
T MTH00047 159 FFCPDRHGVFVGYCSE--LCGVGHSYMPIVIEVVDVD 193 (194)
T ss_pred EEEcCCCEEEEEEeeh--hhCcCcccCcEEEEEEcCC
Confidence 5566899999999984 78876 99999988753
No 35
>TIGR02228 sigpep_I_arch signal peptidase I, archaeal type. This model represents signal peptidase I from most archaea, a subunit of the eukaryotic endoplasmic reticulum signal peptidase I complex, and an apparent signal peptidase I from a small number of bacteria. It is related to but does not overlap in hits with TIGR02227, the bacterial and mitochondrial signal peptidase I.
Probab=66.69 E-value=14 Score=30.14 Aligned_cols=25 Identities=28% Similarity=0.501 Sum_probs=18.2
Q ss_pred CCceEeCCEEEEeecCC-C---ceEEEec
Q 040203 53 TKNFVVGDVLTFNFVTN-E---HDVLRVP 77 (202)
Q Consensus 53 ~~tF~vGD~LvF~y~~~-~---H~V~~V~ 77 (202)
...++.||.++|+...+ . |.|+.+.
T Consensus 58 ~~~~~~GDIVvf~~~~~~~~iihRVi~v~ 86 (158)
T TIGR02228 58 PNDIQVGDVITYKSPGFNTPVTHRVIEIN 86 (158)
T ss_pred cCCCCCCCEEEEEECCCCccEEEEEEEEE
Confidence 45789999999998653 2 6666654
No 36
>PF12961 DUF3850: Domain of Unknown Function with PDB structure (DUF3850)
Probab=65.22 E-value=5.1 Score=29.07 Aligned_cols=17 Identities=29% Similarity=0.708 Sum_probs=13.6
Q ss_pred CCceEeCCEEEEe-ecCC
Q 040203 53 TKNFVVGDVLTFN-FVTN 69 (202)
Q Consensus 53 ~~tF~vGD~LvF~-y~~~ 69 (202)
.+.|+|||.|+++ |..+
T Consensus 26 DRdf~VGD~L~L~E~~~~ 43 (72)
T PF12961_consen 26 DRDFQVGDILVLREWDNG 43 (72)
T ss_pred CCCCCCCCEEEEEEecCC
Confidence 6799999999985 6644
No 37
>cd06555 ASCH_PF0470_like ASC-1 homology domain, subfamily similar to Pyrococcus furiosus Pf0470. The ASCH domain, a small beta-barrel domain found in all three kingdoms of life, resembles the RNA-binding PUA domain and may also interact with RNA. ASCH has been proposed to function as an RNA-binding domain during coactivation, RNA-processing and the regulation of prokaryotic translation.
Probab=64.52 E-value=6.2 Score=30.67 Aligned_cols=23 Identities=30% Similarity=0.543 Sum_probs=15.5
Q ss_pred CceEeCCEEEEe-ecCCCceEEEe
Q 040203 54 KNFVVGDVLTFN-FVTNEHDVLRV 76 (202)
Q Consensus 54 ~tF~vGD~LvF~-y~~~~H~V~~V 76 (202)
+.|++||.|+|+ |+.+.--+++|
T Consensus 30 ~~ikvGD~I~f~~~~~~~~l~v~V 53 (109)
T cd06555 30 QQIKVGDKILFNDLDTGQQLLVKV 53 (109)
T ss_pred hcCCCCCEEEEEEcCCCcEEEEEE
Confidence 589999999995 54433333444
No 38
>TIGR02866 CoxB cytochrome c oxidase, subunit II. Cytochrome c oxidase is the terminal electron acceptor of mitochondria (and one of several possible acceptors in prokaryotes) in the electron transport chain of aerobic respiration. The enzyme couples the oxidation of reduced cytochrome c with the reduction of molecular oxygen to water. This process results in the pumping of four protons across the membrane which are used in the proton gradient powered synthesis of ATP. The oxidase contains two heme a cofactors and three copper atoms as well as other bound ions.
Probab=64.32 E-value=9.3 Score=32.06 Aligned_cols=31 Identities=26% Similarity=0.400 Sum_probs=25.1
Q ss_pred EEEeCCCCcEEEEcCCCCCCCCC---CeEEEEecCC
Q 040203 100 NITLDSAGEHYYICTFGWHCQAG---QKLAITVSAT 132 (202)
Q Consensus 100 ~v~L~~~G~~YFiC~v~~HC~~G---mKl~I~V~~~ 132 (202)
.++.+++|.|++.|+. .|..| |++.|.|..+
T Consensus 160 ~~~~~~~G~y~~~c~e--~cG~~h~~M~~~v~v~~~ 193 (201)
T TIGR02866 160 WFNADEPGVYYGYCAE--LCGAGHSLMLFKVVVVER 193 (201)
T ss_pred EEEeCCCEEEEEEehh--hCCcCccCCeEEEEEECH
Confidence 6677899999999996 56654 9999988763
No 39
>PLN02835 oxidoreductase
Probab=63.69 E-value=55 Score=31.84 Aligned_cols=78 Identities=22% Similarity=0.266 Sum_probs=47.6
Q ss_pred CceEeCCEEEEeecCCC--------ceEEEecccCCCC-CCCCCCCCCCccCCCcEEEe-CCCCcEEEEcCCCCCCCCCC
Q 040203 54 KNFVVGDVLTFNFVTNE--------HDVLRVPKASYDG-CTSSNPIGNPITTGPTNITL-DSAGEHYYICTFGWHCQAGQ 123 (202)
Q Consensus 54 ~tF~vGD~LvF~y~~~~--------H~V~~V~~~~Y~~-C~~s~~~~~~~s~G~~~v~L-~~~G~~YFiC~v~~HC~~Gm 123 (202)
..++.||+|+.+..+.. |-+.+-.....|. ...--++ ..-.+=...|++ +++|+|||=|....+-..|+
T Consensus 62 I~~~~GD~v~v~v~N~L~~~ttiHWHGl~~~~~~~~DGv~~tQ~pI-~PG~sf~Y~F~~~~q~GT~WYHsH~~~q~~~Gl 140 (539)
T PLN02835 62 LDVVTNDNIILNLINKLDQPFLLTWNGIKQRKNSWQDGVLGTNCPI-PPNSNYTYKFQTKDQIGTFTYFPSTLFHKAAGG 140 (539)
T ss_pred EEEECCCEEEEEEEeCCCCCCcEEeCCcccCCCCCCCCCccCcCCC-CCCCcEEEEEEECCCCEeEEEEeCccchhcCcc
Confidence 47899999999876542 5555542221222 0001122 111111136665 57999999998888888899
Q ss_pred eEEEEecCC
Q 040203 124 KLAITVSAT 132 (202)
Q Consensus 124 Kl~I~V~~~ 132 (202)
.-.|.|...
T Consensus 141 ~G~lIV~~~ 149 (539)
T PLN02835 141 FGAINVYER 149 (539)
T ss_pred cceeEEeCC
Confidence 888888653
No 40
>TIGR01480 copper_res_A copper-resistance protein, CopA family. This model represents the CopA copper resistance protein family. CopA is related to laccase (benzenediol:oxygen oxidoreductase) and L-ascorbate oxidase, both copper-containing enzymes. Most members have a typical TAT (twin-arginine translocation) signal sequence with an Arg-Arg pair. Twin-arginine translocation is observed for a large number of periplasmic proteins that cross the inner membrane with metal-containing cofactors already bound. The combination of copper-binding sites and TAT translocation motif suggests a mechansism of resistance by packaging and export.
Probab=62.82 E-value=17 Score=35.87 Aligned_cols=85 Identities=24% Similarity=0.408 Sum_probs=52.1
Q ss_pred CCCCCCCCCcchhhhccCCceEeCCEEEEeecCCC--------ceE-EEeccc--CCCCCCCCCCCCCCccCCC---cEE
Q 040203 36 WSIPMSGGAGAYVAWAATKNFVVGDVLTFNFVTNE--------HDV-LRVPKA--SYDGCTSSNPIGNPITTGP---TNI 101 (202)
Q Consensus 36 W~~~~~~~~~~Y~~WAs~~tF~vGD~LvF~y~~~~--------H~V-~~V~~~--~Y~~C~~s~~~~~~~s~G~---~~v 101 (202)
|++. + ..|.. .....++.||.+++.+.+.. |.. ++|... .|..= .+.+ .+. .|. ..|
T Consensus 488 wtiN---G-~~~~~-~~pl~v~~Gervri~l~N~t~~~HpmHlHG~~f~v~~~~G~~~~~--~dTv-~V~-Pg~t~~~~f 558 (587)
T TIGR01480 488 WSFD---G-EAFGL-KTPLRFNYGERLRVVLVNDTMMAHPIHLHGMWSELEDGQGEFQVR--KHTV-DVP-PGGKRSFRV 558 (587)
T ss_pred EEEC---C-ccCCC-CCceEecCCCEEEEEEECCCCCCcceeEcCceeeeecCCCccccc--CCce-eeC-CCCEEEEEE
Confidence 8876 2 22332 23467999999999997642 333 233211 11110 0111 112 232 366
Q ss_pred EeCCCCcEEEEcCCCCCCCCCCeEEEEe
Q 040203 102 TLDSAGEHYYICTFGWHCQAGQKLAITV 129 (202)
Q Consensus 102 ~L~~~G~~YFiC~v~~HC~~GmKl~I~V 129 (202)
.++.+|.++|=|.+..|=+.||--.|.|
T Consensus 559 ~ad~pG~w~~HCH~l~H~~~GM~~~~~v 586 (587)
T TIGR01480 559 TADALGRWAYHCHMLLHMEAGMFREVTV 586 (587)
T ss_pred ECCCCeEEEEcCCCHHHHhCcCcEEEEe
Confidence 7789999999999999999999877766
No 41
>PLN02191 L-ascorbate oxidase
Probab=58.05 E-value=55 Score=32.09 Aligned_cols=74 Identities=22% Similarity=0.380 Sum_probs=46.9
Q ss_pred CceEeCCEEEEeecCCC---------ceEEEecccCCCCC-CCC-CCCCCCccCCC---cEEEeCCCCcEEEEcCCCCCC
Q 040203 54 KNFVVGDVLTFNFVTNE---------HDVLRVPKASYDGC-TSS-NPIGNPITTGP---TNITLDSAGEHYYICTFGWHC 119 (202)
Q Consensus 54 ~tF~vGD~LvF~y~~~~---------H~V~~V~~~~Y~~C-~~s-~~~~~~~s~G~---~~v~L~~~G~~YFiC~v~~HC 119 (202)
..++.||.|+.+..+.. |-+.+-...-+|.= ..+ -++ ..|. ..|+++++|+|||=|.+..+-
T Consensus 56 i~~~~Gd~v~v~v~N~l~~~~tsiHwHGl~~~~~~~~DGv~gvtq~pI----~PG~s~~Y~f~~~~~GT~wYHsH~~~q~ 131 (574)
T PLN02191 56 IDAVAGDTIVVHLTNKLTTEGLVIHWHGIRQKGSPWADGAAGVTQCAI----NPGETFTYKFTVEKPGTHFYHGHYGMQR 131 (574)
T ss_pred EEEEcCCEEEEEEEECCCCCCccEECCCCCCCCCccccCCCccccCCc----CCCCeEEEEEECCCCeEEEEeeCcHHHH
Confidence 47899999998876542 33332211111110 000 112 1233 377888999999999998888
Q ss_pred CCCCeEEEEecC
Q 040203 120 QAGQKLAITVSA 131 (202)
Q Consensus 120 ~~GmKl~I~V~~ 131 (202)
..||.-.|.|..
T Consensus 132 ~~Gl~G~liV~~ 143 (574)
T PLN02191 132 SAGLYGSLIVDV 143 (574)
T ss_pred hCCCEEEEEEcc
Confidence 999999998864
No 42
>PF09792 But2: Ubiquitin 3 binding protein But2 C-terminal domain; InterPro: IPR018620 This entry represents a presumed C-terminal domain of ubiquitin 3 binding proteins (But2). But2 is conserved in yeasts. It binds to Uba3 and is involved in the NEDD8 signalling pathway [].
Probab=55.06 E-value=43 Score=26.96 Aligned_cols=30 Identities=33% Similarity=0.646 Sum_probs=25.1
Q ss_pred EEEeCCCCcEEEEcCCCCCCCCCCeEEEEecCC
Q 040203 100 NITLDSAGEHYYICTFGWHCQAGQKLAITVSAT 132 (202)
Q Consensus 100 ~v~L~~~G~~YFiC~v~~HC~~GmKl~I~V~~~ 132 (202)
.+++.. |..|-|.. ..|..||++...+...
T Consensus 100 ~~~~~p-G~~y~i~~--f~Cp~g~~v~ye~~~~ 129 (143)
T PF09792_consen 100 TFTVSP-GNSYVINT--FPCPAGQAVSYEMSSA 129 (143)
T ss_pred ceEECC-CCceEeCc--EeCCCCCEEEEEEEec
Confidence 577774 99999986 6899999999988764
No 43
>PLN02991 oxidoreductase
Probab=53.77 E-value=1.3e+02 Score=29.42 Aligned_cols=79 Identities=25% Similarity=0.335 Sum_probs=46.9
Q ss_pred CCceEeCCEEEEeecCCC--------ceEEEecccCCCCCC-CCCCCCCCccCCCcEEEe-CCCCcEEEEcCCCCCCCCC
Q 040203 53 TKNFVVGDVLTFNFVTNE--------HDVLRVPKASYDGCT-SSNPIGNPITTGPTNITL-DSAGEHYYICTFGWHCQAG 122 (202)
Q Consensus 53 ~~tF~vGD~LvF~y~~~~--------H~V~~V~~~~Y~~C~-~s~~~~~~~s~G~~~v~L-~~~G~~YFiC~v~~HC~~G 122 (202)
...++.||.|+.+..+.. |-+.|.....+|.=- .--+| ..-.+=...|++ +++|+|||=+....+-..|
T Consensus 60 ~I~~~~GD~v~V~V~N~L~~~ttiHWHGi~q~~~~~~DGv~~tQcpI-~PG~sftY~F~~~~q~GT~WYHsH~~~q~~~G 138 (543)
T PLN02991 60 DIISVTNDNLIINVFNHLDEPFLISWSGIRNWRNSYQDGVYGTTCPI-PPGKNYTYALQVKDQIGSFYYFPSLGFHKAAG 138 (543)
T ss_pred cEEEECCCEEEEEecCCCCCCccEEECCcccCCCccccCCCCCCCcc-CCCCcEEEEEEeCCCCcceEEecCcchhhhCC
Confidence 347899999999887542 555543211122200 00122 111111237777 5799999998877666678
Q ss_pred CeEEEEecCC
Q 040203 123 QKLAITVSAT 132 (202)
Q Consensus 123 mKl~I~V~~~ 132 (202)
+.-.|.|...
T Consensus 139 l~G~lIV~~~ 148 (543)
T PLN02991 139 GFGAIRISSR 148 (543)
T ss_pred CeeeEEEeCC
Confidence 8878888764
No 44
>MTH00140 COX2 cytochrome c oxidase subunit II; Provisional
Probab=49.14 E-value=23 Score=30.48 Aligned_cols=30 Identities=17% Similarity=0.340 Sum_probs=25.1
Q ss_pred EEEeCCCCcEEEEcCCCCCCCCC---CeEEEEecC
Q 040203 100 NITLDSAGEHYYICTFGWHCQAG---QKLAITVSA 131 (202)
Q Consensus 100 ~v~L~~~G~~YFiC~v~~HC~~G---mKl~I~V~~ 131 (202)
.++.+++|.||..|.. .|..| |++.|.|..
T Consensus 183 ~~~~~~~g~y~~~C~e--~CG~~H~~M~~~v~v~~ 215 (228)
T MTH00140 183 SFEPKRPGVFYGQCSE--ICGANHSFMPIVVEAVP 215 (228)
T ss_pred EEEeCCCEEEEEECcc--ccCcCcCCCeEEEEEEC
Confidence 5567899999999985 78876 898888875
No 45
>PLN02792 oxidoreductase
Probab=45.91 E-value=76 Score=30.94 Aligned_cols=74 Identities=18% Similarity=0.234 Sum_probs=46.0
Q ss_pred CceEeCCEEEEeecCCC--------ceEEEecccC-----CCCCCCCCCCCCCccCCCcEEEe-CCCCcEEEEcCCCCCC
Q 040203 54 KNFVVGDVLTFNFVTNE--------HDVLRVPKAS-----YDGCTSSNPIGNPITTGPTNITL-DSAGEHYYICTFGWHC 119 (202)
Q Consensus 54 ~tF~vGD~LvF~y~~~~--------H~V~~V~~~~-----Y~~C~~s~~~~~~~s~G~~~v~L-~~~G~~YFiC~v~~HC 119 (202)
..++.||+|+.+..+.. |-+.|-.... +..| ++ ..-.+=...|++ +++|+|||=+....+-
T Consensus 49 I~~~~GD~v~V~v~N~L~~~ttiHWHGl~q~~~~~~DGv~~tqc----PI-~PG~sftY~F~~~~q~GT~WYHsH~~~q~ 123 (536)
T PLN02792 49 IRSLTNDNLVINVHNDLDEPFLLSWNGVHMRKNSYQDGVYGTTC----PI-PPGKNYTYDFQVKDQVGSYFYFPSLAVQK 123 (536)
T ss_pred EEEECCCEEEEEEEeCCCCCcCEeCCCcccCCCCccCCCCCCcC----cc-CCCCcEEEEEEeCCCccceEEecCcchhh
Confidence 47899999999887542 5555532111 1123 22 111111137777 4799999999887776
Q ss_pred CCCCeEEEEecCC
Q 040203 120 QAGQKLAITVSAT 132 (202)
Q Consensus 120 ~~GmKl~I~V~~~ 132 (202)
..|+.-.+.|...
T Consensus 124 ~~Gl~G~liI~~~ 136 (536)
T PLN02792 124 AAGGYGSLRIYSL 136 (536)
T ss_pred hcccccceEEeCC
Confidence 7787777766653
No 46
>PTZ00047 cytochrome c oxidase subunit II; Provisional
Probab=42.62 E-value=35 Score=28.45 Aligned_cols=30 Identities=17% Similarity=0.280 Sum_probs=23.4
Q ss_pred EEEeCCCCcEEEEcCCCCCCCCC---CeEEEEecC
Q 040203 100 NITLDSAGEHYYICTFGWHCQAG---QKLAITVSA 131 (202)
Q Consensus 100 ~v~L~~~G~~YFiC~v~~HC~~G---mKl~I~V~~ 131 (202)
.+..+++|.||..|.. .|..| |.+.|.|..
T Consensus 116 ~~~~~~~G~y~gqCsE--lCG~gHs~M~~~V~vvs 148 (162)
T PTZ00047 116 NTFILREGVFYGQCSE--MCGTLHGFMPIVVEAVS 148 (162)
T ss_pred EEecCCCeEEEEEcch--hcCcCccCceEEEEEeC
Confidence 4566899999999985 67754 888887765
No 47
>PF05382 Amidase_5: Bacteriophage peptidoglycan hydrolase ; InterPro: IPR008044 This entry is represented by Bacteriophage SFi21, lysin (Cell wall hydrolase; 3.5.1.28 from EC). At least one of proteins in this entry, the Pal protein from the pneumococcal bacteriophage Dp-1 (O03979 from SWISSPROT) has been shown to be an N-acetylmuramoyl-L-alanine amidase []. According to the known modular structure of this and other peptidoglycan hydrolases from the pneumococcal system, the active site should reside within this domain while a C-terminal domain binds to the choline residues of the cell wall teichoic acids [, ].
Probab=42.17 E-value=51 Score=26.82 Aligned_cols=35 Identities=14% Similarity=0.206 Sum_probs=27.5
Q ss_pred CceEeCCEEEEeecC-----CCceEEEecccCCCCCCCCC
Q 040203 54 KNFVVGDVLTFNFVT-----NEHDVLRVPKASYDGCTSSN 88 (202)
Q Consensus 54 ~tF~vGD~LvF~y~~-----~~H~V~~V~~~~Y~~C~~s~ 88 (202)
...+.||.+++.-.. .-|..+.+++....+|+...
T Consensus 74 ~~~q~GDI~I~g~~g~S~G~~GHtgif~~~~~iIhc~y~~ 113 (145)
T PF05382_consen 74 WNLQRGDIFIWGRRGNSAGAGGHTGIFMDNDTIIHCNYGA 113 (145)
T ss_pred ccccCCCEEEEcCCCCCCCCCCeEEEEeCCCcEEEecCCC
Confidence 478999999875541 34999999888899999743
No 48
>PF02362 B3: B3 DNA binding domain; InterPro: IPR003340 Two DNA binding proteins, RAV1 and RAV2 from Arabidopsis thaliana contain two distinct amino acid sequence domains found only in higher plant species. The N-terminal regions of RAV1 and RAV2 are homologous to the AP2 DNA-binding domain (see IPR001471 from INTERPRO) present in a family of transcription factors, while the C-terminal region exhibits homology to the highly conserved C-terminal domain, designated B3, of VP1/ABI3 transcription factors []. The AP2 and B3-like domains of RAV1 bind autonomously to the CAACA and CACCTG motifs, respectively, and together achieve a high affinity and specificity of binding. It has been suggested that the AP2 and B3-like domains of RAV1 are connected by a highly flexible structure enabling the two domains to bind to the CAACA and CACCTG motifs in various spacings and orientations [].; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 1WID_A 1YEL_A.
Probab=41.45 E-value=22 Score=25.52 Aligned_cols=19 Identities=26% Similarity=0.492 Sum_probs=12.3
Q ss_pred ccCCceEeCCEEEEeecCC
Q 040203 51 AATKNFVVGDVLTFNFVTN 69 (202)
Q Consensus 51 As~~tF~vGD~LvF~y~~~ 69 (202)
+..+.+++||.++|++...
T Consensus 69 v~~n~L~~GD~~~F~~~~~ 87 (100)
T PF02362_consen 69 VRDNGLKEGDVCVFELIGN 87 (100)
T ss_dssp HHHCT--TT-EEEEEE-SS
T ss_pred HHHcCCCCCCEEEEEEecC
Confidence 5578999999999999753
No 49
>MTH00154 COX2 cytochrome c oxidase subunit II; Provisional
Probab=41.11 E-value=36 Score=29.37 Aligned_cols=30 Identities=20% Similarity=0.401 Sum_probs=24.5
Q ss_pred EEEeCCCCcEEEEcCCCCCCCCC---CeEEEEecC
Q 040203 100 NITLDSAGEHYYICTFGWHCQAG---QKLAITVSA 131 (202)
Q Consensus 100 ~v~L~~~G~~YFiC~v~~HC~~G---mKl~I~V~~ 131 (202)
.++.+++|.||..|+. -|..| |++.|.|..
T Consensus 183 ~~~~~~~G~y~g~Cse--~CG~~H~~M~~~v~vv~ 215 (227)
T MTH00154 183 NFLINRPGLFFGQCSE--ICGANHSFMPIVIESVS 215 (227)
T ss_pred EEEEcCceEEEEEeec--hhCcCccCCeEEEEEeC
Confidence 5667899999999984 68876 888888765
No 50
>TIGR01653 lactococcin_972 bacteriocin, lactococcin 972 family. This model represents bacteriocins related to lactococcin 972. Members tend to be found in association with a seven transmembrane putative immunity protein.
Probab=40.90 E-value=35 Score=25.85 Aligned_cols=32 Identities=22% Similarity=0.103 Sum_probs=15.5
Q ss_pred CcchhHHHHHHHHHHHHHhhhcc--cceEEEecC
Q 040203 1 MEKFVSMAFVGLIGAVLLMECAE--AQTVHVVGD 32 (202)
Q Consensus 1 Ma~~~~~~~~~~~~~~~~l~~~a--~a~~~~VGg 32 (202)
|.+++..++++.++++.+...+. .+.++.-|+
T Consensus 1 mkkk~~~~~~~~~il~~~~g~a~~~~~~~~~~Gg 34 (92)
T TIGR01653 1 MKKKVVASLVSTTILATLGGLAAQVEAAQSTQGG 34 (92)
T ss_pred CchhhHHHHHHHHHHhhhhhhheeecceEEecCc
Confidence 77777444444444444322222 255565554
No 51
>TIGR03389 laccase laccase, plant. Members of this protein family include the copper-containing enzyme laccase (EC 1.10.3.2), often several from a single plant species, and additional, uncharacterized, closely related plant proteins termed laccase-like multicopper oxidases. This protein family shows considerable sequence similarity to the L-ascorbate oxidase (EC 1.10.3.3) family. Laccases are enzymes of rather broad specificity, and classification of all proteins scoring about the trusted cutoff of this model as laccases may be appropriate.
Probab=39.94 E-value=1.1e+02 Score=29.63 Aligned_cols=82 Identities=23% Similarity=0.268 Sum_probs=0.0
Q ss_pred ceEeCCEEEEeecCCC--------ceEEEecccCCCC--CCCCCCCCCCccCCCcEEEe-CCCCcEEEEcCCCCCCCCCC
Q 040203 55 NFVVGDVLTFNFVTNE--------HDVLRVPKASYDG--CTSSNPIGNPITTGPTNITL-DSAGEHYYICTFGWHCQAGQ 123 (202)
Q Consensus 55 tF~vGD~LvF~y~~~~--------H~V~~V~~~~Y~~--C~~s~~~~~~~s~G~~~v~L-~~~G~~YFiC~v~~HC~~Gm 123 (202)
.++.||+|+.+..+.. |-+.|.....+|. .-.--++ ..-.+-...|++ +++|+|||=|.. .+...||
T Consensus 37 ~~~~GD~v~v~v~N~l~~~tsiHwHGl~q~~~~~~DGv~~vTq~pI-~PG~s~~Y~f~~~~~~GT~WYHsH~-~~~~~Gl 114 (539)
T TIGR03389 37 YAREGDTVIVNVTNNVQYNVTIHWHGVRQLRNGWADGPAYITQCPI-QPGQSYVYNFTITGQRGTLWWHAHI-SWLRATV 114 (539)
T ss_pred EEEcCCEEEEEEEeCCCCCeeEecCCCCCCCCCCCCCCcccccCCc-CCCCeEEEEEEecCCCeeEEEecCc-hhhhccc
Q ss_pred eEEEEecCCCCCCCC
Q 040203 124 KLAITVSATPGSSPS 138 (202)
Q Consensus 124 Kl~I~V~~~~~~sp~ 138 (202)
.-.|.|..+.....+
T Consensus 115 ~G~lIV~~~~~~~~~ 129 (539)
T TIGR03389 115 YGAIVILPKPGVPYP 129 (539)
T ss_pred eEEEEEcCCCCCCCC
No 52
>MTH00117 COX2 cytochrome c oxidase subunit II; Provisional
Probab=39.71 E-value=41 Score=28.99 Aligned_cols=30 Identities=17% Similarity=0.328 Sum_probs=24.6
Q ss_pred EEEeCCCCcEEEEcCCCCCCCCC---CeEEEEecC
Q 040203 100 NITLDSAGEHYYICTFGWHCQAG---QKLAITVSA 131 (202)
Q Consensus 100 ~v~L~~~G~~YFiC~v~~HC~~G---mKl~I~V~~ 131 (202)
.+..+++|.||..|+. -|..| |++.|.|..
T Consensus 183 ~~~~~~~G~y~g~CsE--~CG~~Hs~M~~~v~vv~ 215 (227)
T MTH00117 183 SFITTRPGVFYGQCSE--ICGANHSFMPIVVESVP 215 (227)
T ss_pred EEEEcccceEEEEecc--ccccCccCCeEEEEEcC
Confidence 5667899999999985 68876 888888765
No 53
>PF00686 CBM_20: Starch binding domain; InterPro: IPR002044 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This domain binds to starch, and is found often at the C terminus of a variety of glycosyl hydrolases acting on polysaccharides more rapidly than on oligosaccharides. Reations include: the hydrolysis of terminal 1,4-linked alpha-D-glucose residues successively from non-reducing ends of the chains with release of beta-D-glucose, the degradation of starch to cyclodextrins by formation of a 1,4-alpha-D-glucosidic bond, and hydrolysis of 1,4-alpha-glucosidic linkages in polysaccharides to remove successive maltose units from the non-reducing ends of the chains.; GO: 0003824 catalytic activity, 0005975 carbohydrate metabolic process; PDB: 1KUL_A 1ACZ_A 1AC0_A 1KUM_A 2Z0B_C 9CGT_A 3CGT_A 6CGT_A 4CGT_A 1CGT_A ....
Probab=39.70 E-value=19 Score=26.30 Aligned_cols=43 Identities=26% Similarity=0.588 Sum_probs=31.4
Q ss_pred ceEEEecCCC--C-CCCCC----CCC--CcchhhhccCCceEeCCEEEEeec
Q 040203 25 QTVHVVGDSM--G-WSIPM----SGG--AGAYVAWAATKNFVVGDVLTFNFV 67 (202)
Q Consensus 25 a~~~~VGg~~--G-W~~~~----~~~--~~~Y~~WAs~~tF~vGD~LvF~y~ 67 (202)
...|+||+.. | |+... ... ...|..|.....+..|..+.|+|-
T Consensus 16 e~v~i~Gs~~~LG~W~~~~a~~l~~~~~~~~~~~W~~~v~lp~~~~~eYKy~ 67 (96)
T PF00686_consen 16 ESVYIVGSCPELGNWDPKKAVPLQWNEGTENYPIWSATVDLPAGTPFEYKYV 67 (96)
T ss_dssp EEEEEEESSGGGTTTSGGGSBESEBESSSSTTTSEEEEEEEETTSEEEEEEE
T ss_pred CEEEEEECcHHhCCCChHhccccccccCCCCCCeEEEEEECcCCCEEEEEEE
Confidence 4578999853 4 99641 111 236899999889999999999995
No 54
>MTH00168 COX2 cytochrome c oxidase subunit II; Provisional
Probab=39.53 E-value=39 Score=29.06 Aligned_cols=30 Identities=17% Similarity=0.339 Sum_probs=24.6
Q ss_pred EEEeCCCCcEEEEcCCCCCCCCC---CeEEEEecC
Q 040203 100 NITLDSAGEHYYICTFGWHCQAG---QKLAITVSA 131 (202)
Q Consensus 100 ~v~L~~~G~~YFiC~v~~HC~~G---mKl~I~V~~ 131 (202)
.+..+++|.||..|+. -|..| |++.|.|..
T Consensus 183 ~~~~~~~G~~~g~CsE--~CG~~Hs~M~~~v~vv~ 215 (225)
T MTH00168 183 AFLSSRPGSFYGQCSE--ICGANHSFMPIVVEFVP 215 (225)
T ss_pred EEEcCCCEEEEEEccc--ccCcCcCCCeEEEEEeC
Confidence 5667899999999984 68876 888888765
No 55
>PRK11546 zraP zinc resistance protein; Provisional
Probab=39.17 E-value=24 Score=28.77 Aligned_cols=36 Identities=19% Similarity=0.159 Sum_probs=21.0
Q ss_pred CcchhHHHHHHHHH-HHHHhhhcccceEEEecCCCCCC
Q 040203 1 MEKFVSMAFVGLIG-AVLLMECAEAQTVHVVGDSMGWS 37 (202)
Q Consensus 1 Ma~~~~~~~~~~~~-~~~~l~~~a~a~~~~VGg~~GW~ 37 (202)
|.+...++|.++++ ++.++...+.+..+- |+..||-
T Consensus 1 ~~~~~~~~~~~~ala~~~~~s~~a~A~~~~-G~~~G~~ 37 (143)
T PRK11546 1 MKRNTKIALVLMALSALAMGSGSAFAHHHW-GGGHGMW 37 (143)
T ss_pred CCcchhHHHHHHHHHHHHHhhhHHHHhhcc-CCCCCCC
Confidence 77777766644333 333444555555555 7777866
No 56
>PF10377 ATG11: Autophagy-related protein 11; InterPro: IPR019460 This family consists of proteins involved in telomere maintenance. In Schizosaccharomyces pombe (fission yeast) this protein is called Taf1 (taz1 interacting factor) and is part of the telomere cap complex. In Saccharomyces cerevisiae (baker's yeast) this protein is called ATG11 and is known to be involved in vacuolar targeting and peroxisome degradation [, ].
Probab=39.01 E-value=21 Score=28.35 Aligned_cols=19 Identities=37% Similarity=0.642 Sum_probs=15.9
Q ss_pred CceEeCCEEEEeecCCCce
Q 040203 54 KNFVVGDVLTFNFVTNEHD 72 (202)
Q Consensus 54 ~tF~vGD~LvF~y~~~~H~ 72 (202)
++|++||.++|-++...|+
T Consensus 41 ~~f~~GDlvLflpt~~~~~ 59 (129)
T PF10377_consen 41 RNFQVGDLVLFLPTRNHNN 59 (129)
T ss_pred ecCCCCCEEEEEecCCCCc
Confidence 4899999999999876553
No 57
>MTH00139 COX2 cytochrome c oxidase subunit II; Provisional
Probab=38.11 E-value=40 Score=28.93 Aligned_cols=30 Identities=17% Similarity=0.387 Sum_probs=24.8
Q ss_pred EEEeCCCCcEEEEcCCCCCCCCC---CeEEEEecC
Q 040203 100 NITLDSAGEHYYICTFGWHCQAG---QKLAITVSA 131 (202)
Q Consensus 100 ~v~L~~~G~~YFiC~v~~HC~~G---mKl~I~V~~ 131 (202)
.++.+++|.||..|+. -|..| |++.|.|..
T Consensus 183 ~~~~~~~G~y~g~CsE--~CG~~Hs~M~~~v~vv~ 215 (226)
T MTH00139 183 GFFINRPGVFYGQCSE--ICGANHSFMPIVVEAIS 215 (226)
T ss_pred EEEcCCCEEEEEEChh--hcCcCcCCCeEEEEEeC
Confidence 5667899999999985 78876 888888765
No 58
>TIGR01433 CyoA cytochrome o ubiquinol oxidase subunit II. This enzyme catalyzes the oxidation of ubiquinol with the concomitant reduction of molecular oxygen to water. This acts as the terminal electron acceptor in the respiratory chain. Subunit II is responsible for binding and oxidation of the ubiquinone substrate. This sequence is closely related to QoxA, which oxidizes quinol in gram positive bacteria but which is in complex with subunits which utilize cytochromes a in the reduction of molecular oxygen. Slightly more distantly related is subunit II of cytochrome c oxidase which uses cyt. c as the oxidant.
Probab=38.09 E-value=42 Score=29.00 Aligned_cols=30 Identities=13% Similarity=0.110 Sum_probs=25.0
Q ss_pred EEEeCCCCcEEEEcCCCCCCCCC---CeEEEEecC
Q 040203 100 NITLDSAGEHYYICTFGWHCQAG---QKLAITVSA 131 (202)
Q Consensus 100 ~v~L~~~G~~YFiC~v~~HC~~G---mKl~I~V~~ 131 (202)
.++.+++|.|+-.|.. .|..| |++.|.|..
T Consensus 182 ~~~~~~~G~y~g~CaE--~CG~~Ha~M~~~V~v~~ 214 (226)
T TIGR01433 182 HLIANEPGVYDGISAN--YSGPGFSGMKFKAIATD 214 (226)
T ss_pred EEEeCCCEEEEEEchh--hcCcCccCCeEEEEEEC
Confidence 6678999999999984 78876 898888875
No 59
>MTH00129 COX2 cytochrome c oxidase subunit II; Provisional
Probab=37.96 E-value=39 Score=29.26 Aligned_cols=30 Identities=17% Similarity=0.334 Sum_probs=24.0
Q ss_pred EEEeCCCCcEEEEcCCCCCCCCC---CeEEEEecC
Q 040203 100 NITLDSAGEHYYICTFGWHCQAG---QKLAITVSA 131 (202)
Q Consensus 100 ~v~L~~~G~~YFiC~v~~HC~~G---mKl~I~V~~ 131 (202)
.+..+++|.||..|+. -|..| |++.|.|..
T Consensus 183 ~~~~~~~G~~~g~C~e--~CG~~H~~M~~~v~vv~ 215 (230)
T MTH00129 183 AFIASRPGVFYGQCSE--ICGANHSFMPIVVEAVP 215 (230)
T ss_pred EEEeCCceEEEEEChh--hccccccCCcEEEEEEC
Confidence 5567899999999985 67765 888888765
No 60
>MTH00098 COX2 cytochrome c oxidase subunit II; Validated
Probab=37.81 E-value=42 Score=28.99 Aligned_cols=30 Identities=13% Similarity=0.315 Sum_probs=23.9
Q ss_pred EEEeCCCCcEEEEcCCCCCCCCC---CeEEEEecC
Q 040203 100 NITLDSAGEHYYICTFGWHCQAG---QKLAITVSA 131 (202)
Q Consensus 100 ~v~L~~~G~~YFiC~v~~HC~~G---mKl~I~V~~ 131 (202)
.+..+++|.||..|+. -|..| |.+.|.|..
T Consensus 183 ~~~~~~~G~~~g~Cse--~CG~~H~~M~~~v~v~~ 215 (227)
T MTH00098 183 TLMSTRPGLYYGQCSE--ICGSNHSFMPIVLELVP 215 (227)
T ss_pred EEecCCcEEEEEECcc--ccCcCcCCceEEEEEeC
Confidence 5567899999999985 68776 888887765
No 61
>TIGR01480 copper_res_A copper-resistance protein, CopA family. This model represents the CopA copper resistance protein family. CopA is related to laccase (benzenediol:oxygen oxidoreductase) and L-ascorbate oxidase, both copper-containing enzymes. Most members have a typical TAT (twin-arginine translocation) signal sequence with an Arg-Arg pair. Twin-arginine translocation is observed for a large number of periplasmic proteins that cross the inner membrane with metal-containing cofactors already bound. The combination of copper-binding sites and TAT translocation motif suggests a mechansism of resistance by packaging and export.
Probab=37.44 E-value=86 Score=30.97 Aligned_cols=72 Identities=21% Similarity=0.306 Sum_probs=44.3
Q ss_pred CceEeCCEEEEeecCCC--------ceEEEecccCCCC-CCCC-CCCCCCccCCC---cEEEeCCCCcEEEEcCCCCCCC
Q 040203 54 KNFVVGDVLTFNFVTNE--------HDVLRVPKASYDG-CTSS-NPIGNPITTGP---TNITLDSAGEHYYICTFGWHCQ 120 (202)
Q Consensus 54 ~tF~vGD~LvF~y~~~~--------H~V~~V~~~~Y~~-C~~s-~~~~~~~s~G~---~~v~L~~~G~~YFiC~v~~HC~ 120 (202)
..++.||.|+.++.+.. |-+..-+ ..|. ...+ .++ ..|. ..|++.++|+|||=|....+=+
T Consensus 78 ir~~~Gd~v~v~v~N~l~~~tsiHwHGl~~~~--~~DGvP~vt~~~I----~PG~s~~Y~f~~~~~GTyWYHsH~~~q~~ 151 (587)
T TIGR01480 78 LRWREGDTVRLRVTNTLPEDTSIHWHGILLPF--QMDGVPGVSFAGI----APGETFTYRFPVRQSGTYWYHSHSGFQEQ 151 (587)
T ss_pred EEEECCCEEEEEEEcCCCCCceEEcCCCcCCc--cccCCCccccccc----CCCCeEEEEEECCCCeeEEEecCchhHhh
Confidence 47899999999887643 2221111 0111 1111 111 1233 4777889999999998777777
Q ss_pred CCCeEEEEecC
Q 040203 121 AGQKLAITVSA 131 (202)
Q Consensus 121 ~GmKl~I~V~~ 131 (202)
.|+.-.|.|..
T Consensus 152 ~GL~G~lIV~~ 162 (587)
T TIGR01480 152 AGLYGPLIIDP 162 (587)
T ss_pred ccceEEEEECC
Confidence 89988888864
No 62
>MTH00038 COX2 cytochrome c oxidase subunit II; Provisional
Probab=36.43 E-value=48 Score=28.63 Aligned_cols=30 Identities=20% Similarity=0.360 Sum_probs=24.6
Q ss_pred EEEeCCCCcEEEEcCCCCCCCCC---CeEEEEecC
Q 040203 100 NITLDSAGEHYYICTFGWHCQAG---QKLAITVSA 131 (202)
Q Consensus 100 ~v~L~~~G~~YFiC~v~~HC~~G---mKl~I~V~~ 131 (202)
.++.+++|.||..|+. -|..| |++.|.|..
T Consensus 183 ~~~~~~~G~~~g~Cse--~CG~~Hs~M~~~v~vv~ 215 (229)
T MTH00038 183 TFFISRTGLFYGQCSE--ICGANHSFMPIVIESVP 215 (229)
T ss_pred EEEcCCCEEEEEEccc--ccCcCcCCCeEEEEEeC
Confidence 5667899999999984 68876 888888765
No 63
>PF04014 Antitoxin-MazE: Antidote-toxin recognition MazE; InterPro: IPR007159 This domain is found in AbrB from Bacillus subtilis. The product of the abrB gene is an ambiactive repressor and activator of the transcription of genes expressed during the transition state between vegetative growth and the onset of stationary phase and sporulation []. AbrB is thought to interact directly with the transcription initiation regions of genes under its control []. AbrB contains a helix-turn-helix structure, but this domain ends before the helix-turn-helix begins []. The product of the B. subtilis gene spoVT is another member of this family and is also a transcriptional regulator []. DNA-binding activity in this AbrB homologue requires hexamerisation []. Another family member has been isolated from the Sulfolobus solfataricus and has been identified as a homologue of bacterial repressor-like proteins. The Escherichia coli family member SohA or Prl1F appears to be bifunctional and is able to regulate its own expression as well as relieve the export block imposed by high-level synthesis of beta-galactosidase hybrid proteins [].; PDB: 2L66_A 2GLW_A 3TND_D 2W1T_B 2RO5_B 2FY9_A 2RO3_B 1UB4_C 3ZVK_G 1YFB_B ....
Probab=36.42 E-value=17 Score=23.35 Aligned_cols=33 Identities=21% Similarity=0.242 Sum_probs=24.0
Q ss_pred EecCCCCCCCCCCCCCcchhhhccCCceEeCCEEEEeecCC
Q 040203 29 VVGDSMGWSIPMSGGAGAYVAWAATKNFVVGDVLTFNFVTN 69 (202)
Q Consensus 29 ~VGg~~GW~~~~~~~~~~Y~~WAs~~tF~vGD~LvF~y~~~ 69 (202)
+||.+.+=++| ..|.....++.||.|.|.+..+
T Consensus 2 kvg~s~~v~iP--------k~~~~~l~l~~Gd~v~i~~~~~ 34 (47)
T PF04014_consen 2 KVGNSGQVTIP--------KEIREKLGLKPGDEVEIEVEGD 34 (47)
T ss_dssp EETTCSEEEE---------HHHHHHTTSSTTTEEEEEEETT
T ss_pred EECCCceEECC--------HHHHHHcCCCCCCEEEEEEeCC
Confidence 45555555555 4677777899999999999754
No 64
>cd05820 CBM20_novamyl Novamyl (also known as acarviose transferase, ATase, maltogenic alpha-amylase, glucan 1,4-alpha-maltohydrolase, and AcbD), C-terminal CBM20 (carbohydrate-binding module, family 20) domain. Novamyl has a five-domain structure similar to that of cyclodextrin glucanotransferase (CGTase). Novamyl has a substrate-binding surface with an open groove which can accommodate both cyclodextrins and linear substrates. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. laforin). CBM20 folds as an antiparallel beta-barrel structure with two starch binding sites. These two sites are thought to differ functionally with site 1 acting as the initial starch recognition site and site 2 involved in the specific reco
Probab=36.29 E-value=19 Score=26.96 Aligned_cols=43 Identities=19% Similarity=0.465 Sum_probs=30.3
Q ss_pred ceEEEecCC--CC-CCCCC-----CCCCcchhhhccCCceEeCCEEEEeec
Q 040203 25 QTVHVVGDS--MG-WSIPM-----SGGAGAYVAWAATKNFVVGDVLTFNFV 67 (202)
Q Consensus 25 a~~~~VGg~--~G-W~~~~-----~~~~~~Y~~WAs~~tF~vGD~LvF~y~ 67 (202)
...|+||+. .| |.... +-....|..|.....+..|..+.|||-
T Consensus 19 e~l~vvGs~~~LG~W~~~~~~a~~~l~~~~~~~W~~~~~lp~~~~veyK~v 69 (103)
T cd05820 19 EFLYLTGSVPELGNWSTSTDQAVGPLLCPNWPDWFVVASVPAGTYIEFKFL 69 (103)
T ss_pred CEEEEEECcHHhCCCChhccccccccccCCCCCEEEEEEcCCCCcEEEEEE
Confidence 356889974 34 98531 112357788988888889999999985
No 65
>cd05810 CBM20_alpha_MTH Glucan 1,4-alpha-maltotetraohydrolase (alpha-MTH), C-terminal CBM20 (carbohydrate-binding module, family 20) domain. Alpha-MTH, also known as maltotetraose-forming exo-amylase or G4-amylase, is an exo-amylase found in bacteria that degrades starch from its non-reducing end. Most alpha-MTHs have, in addition to the C-terminal CBM20 domain, an N-terminal glycosyl hydrolase family 13 catalytic domain. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. laforin). CBM20 folds as an antiparallel beta-barrel structure with two starch binding sites. These two sites are thought to differ functionally with site 1 acting as the initial starch recognition site and site 2 involved in the specific recognitio
Probab=35.77 E-value=20 Score=26.65 Aligned_cols=43 Identities=26% Similarity=0.474 Sum_probs=30.0
Q ss_pred ceEEEecCCC--C-CCCCC--CCCCcchhhhccCCceEeCCEEEEeec
Q 040203 25 QTVHVVGDSM--G-WSIPM--SGGAGAYVAWAATKNFVVGDVLTFNFV 67 (202)
Q Consensus 25 a~~~~VGg~~--G-W~~~~--~~~~~~Y~~WAs~~tF~vGD~LvF~y~ 67 (202)
...|++|+.. | |.... .-....|..|.....+..|..|+|+|-
T Consensus 16 e~l~v~Gs~~~LG~W~~~~a~~l~~~~~~~W~~~v~lp~~~~veyKyv 63 (97)
T cd05810 16 QSVYVVGNVPQLGNWSPADAVKLDPTAYPTWSGSISLPASTNVEWKCL 63 (97)
T ss_pred CeEEEEEChHHhCCCChhhcccccCCCCCeEEEEEEcCCCCeEEEEEE
Confidence 3458899743 3 98542 112347778988888899999999884
No 66
>PRK09838 periplasmic copper-binding protein; Provisional
Probab=35.63 E-value=2e+02 Score=22.41 Aligned_cols=19 Identities=32% Similarity=0.534 Sum_probs=14.6
Q ss_pred hccCCceEeCCEEEEeecC
Q 040203 50 WAATKNFVVGDVLTFNFVT 68 (202)
Q Consensus 50 WAs~~tF~vGD~LvF~y~~ 68 (202)
...-..+++||.|.|.+..
T Consensus 83 ~~~l~~lk~G~~V~F~~~~ 101 (115)
T PRK09838 83 QTKMSEIKTGDKVAFNFVQ 101 (115)
T ss_pred hhhhccCCCCCEEEEEEEE
Confidence 3444578999999999874
No 67
>MTH00023 COX2 cytochrome c oxidase subunit II; Validated
Probab=34.20 E-value=51 Score=28.69 Aligned_cols=30 Identities=20% Similarity=0.387 Sum_probs=24.7
Q ss_pred EEEeCCCCcEEEEcCCCCCCCCC---CeEEEEecC
Q 040203 100 NITLDSAGEHYYICTFGWHCQAG---QKLAITVSA 131 (202)
Q Consensus 100 ~v~L~~~G~~YFiC~v~~HC~~G---mKl~I~V~~ 131 (202)
.++.+++|.||..|+. .|..| |++.|.|..
T Consensus 194 ~~~~~~~G~y~g~C~e--~CG~~Hs~M~~~v~vv~ 226 (240)
T MTH00023 194 GFFIKRPGVFYGQCSE--ICGANHSFMPIVIEAVS 226 (240)
T ss_pred EEEcCCCEEEEEEchh--hcCcCccCCeEEEEEEC
Confidence 5667899999999984 78876 888888765
No 68
>TIGR02227 sigpep_I_bact signal peptidase I, bacterial type. A related model finds a simlar protein in many archaea and a few bacteria, as well as a microsomal (endoplasmic reticulum) protein in eukaryotes.
Probab=33.99 E-value=1.2e+02 Score=24.41 Aligned_cols=14 Identities=21% Similarity=0.299 Sum_probs=11.6
Q ss_pred CceEeCCEEEEeec
Q 040203 54 KNFVVGDVLTFNFV 67 (202)
Q Consensus 54 ~tF~vGD~LvF~y~ 67 (202)
+.++.||.++|+..
T Consensus 50 ~~~~rGDiVvf~~~ 63 (163)
T TIGR02227 50 SDPKRGDIVVFKDP 63 (163)
T ss_pred CCCCCCcEEEEecC
Confidence 57888999999875
No 69
>PF07127 Nodulin_late: Late nodulin protein; InterPro: IPR009810 This family consists of several plant specific late nodulin sequences which are homologous to the Pisum sativum (Garden pea) ENOD3 protein. ENOD3 is expressed in the late stages of root nodule formation and contains two pairs of cysteine residues toward the proteins C terminus which may be involved in metal-binding [].; GO: 0046872 metal ion binding, 0009878 nodule morphogenesis
Probab=32.59 E-value=43 Score=22.31 Aligned_cols=20 Identities=20% Similarity=0.336 Sum_probs=15.1
Q ss_pred CcchhHHHHHHHHHHHHHhh
Q 040203 1 MEKFVSMAFVGLIGAVLLME 20 (202)
Q Consensus 1 Ma~~~~~~~~~~~~~~~~l~ 20 (202)
|++.+.++-++++++.+++.
T Consensus 1 Ma~ilKFvY~mIiflslflv 20 (54)
T PF07127_consen 1 MAKILKFVYAMIIFLSLFLV 20 (54)
T ss_pred CccchhhHHHHHHHHHHHHh
Confidence 89999888877776655554
No 70
>TIGR01432 QOXA cytochrome aa3 quinol oxidase, subunit II. This enzyme catalyzes the oxidation of quinol with the concomitant reduction of molecular oxygen to water. This acts as the terminal electron acceptor in the respiratory chain. This subunit contains two transmembrane helices and a large external domain responsible for the binding and oxidation of quinol. QuoX is (presently) only found in gram positive bacteria of the Bacillus/Staphylococcus group. Like CyoA, the ubiquinol oxidase found in proteobacteria, the residues responsible for the ligation of Cu(a) and cytochrome c (found in the related cyt. c oxidases) are absent. Unlike CyoA, QoxA is in complex with a subunit I which contains cytochromes a similar to the cyt. c oxidases (as opposed to cytochromes b).
Probab=32.03 E-value=59 Score=27.66 Aligned_cols=31 Identities=13% Similarity=0.098 Sum_probs=25.8
Q ss_pred EEEeCCCCcEEEEcCCCCCCCCC---CeEEEEecCC
Q 040203 100 NITLDSAGEHYYICTFGWHCQAG---QKLAITVSAT 132 (202)
Q Consensus 100 ~v~L~~~G~~YFiC~v~~HC~~G---mKl~I~V~~~ 132 (202)
.++-+++|.||-.|+. .|..| |++.|.|..+
T Consensus 173 ~~~~~~~G~y~g~Cae--~CG~~Hs~M~~~v~v~~~ 206 (217)
T TIGR01432 173 YLQADQVGTYRGRNAN--FNGEGFADQTFDVNAVSE 206 (217)
T ss_pred EEEeCCCEEEEEEehh--hcCccccCCeEEEEEeCH
Confidence 6777899999999984 78876 9999988763
No 71
>KOG3416 consensus Predicted nucleic acid binding protein [General function prediction only]
Probab=31.85 E-value=44 Score=26.99 Aligned_cols=31 Identities=19% Similarity=0.321 Sum_probs=19.5
Q ss_pred EEEecCCCCCCCCCCCCCcchhhhc-cCCceEeCCEEEEe
Q 040203 27 VHVVGDSMGWSIPMSGGAGAYVAWA-ATKNFVVGDVLTFN 65 (202)
Q Consensus 27 ~~~VGg~~GW~~~~~~~~~~Y~~WA-s~~tF~vGD~LvF~ 65 (202)
..+|||+.| ..+..-|- ....|+.||.|.|.
T Consensus 40 ~~kVaD~Tg--------sI~isvW~e~~~~~~PGDIirLt 71 (134)
T KOG3416|consen 40 SCKVADETG--------SINISVWDEEGCLIQPGDIIRLT 71 (134)
T ss_pred EEEEecccc--------eEEEEEecCcCcccCCccEEEec
Confidence 467888776 12233332 25789999987664
No 72
>MTH00008 COX2 cytochrome c oxidase subunit II; Validated
Probab=31.76 E-value=59 Score=28.10 Aligned_cols=30 Identities=20% Similarity=0.404 Sum_probs=24.2
Q ss_pred EEEeCCCCcEEEEcCCCCCCCCC---CeEEEEecC
Q 040203 100 NITLDSAGEHYYICTFGWHCQAG---QKLAITVSA 131 (202)
Q Consensus 100 ~v~L~~~G~~YFiC~v~~HC~~G---mKl~I~V~~ 131 (202)
.++.+++|.||..|+. -|..| |.+.|.|..
T Consensus 183 ~~~~~~~G~~~g~Cse--~CG~~Hs~M~~~v~vv~ 215 (228)
T MTH00008 183 GFTITRPGVFYGQCSE--ICGANHSFMPIVLEAVD 215 (228)
T ss_pred EEEeCCCEEEEEEChh--hcCcCccCceeEEEEEC
Confidence 5667899999999985 68765 888888765
No 73
>PF02553 CbiN: Cobalt transport protein component CbiN; InterPro: IPR003705 The cobalt transport protein CbiN is part of the active cobalt transport system involved in uptake of cobalt in to the cell involved with cobalamin biosynthesis (vitamin B12). It has been suggested that CbiN may function as the periplasmic binding protein component of the active cobalt transport system [].; GO: 0015087 cobalt ion transmembrane transporter activity, 0006824 cobalt ion transport, 0009236 cobalamin biosynthetic process, 0016020 membrane
Probab=31.03 E-value=45 Score=24.31 Aligned_cols=9 Identities=22% Similarity=0.604 Sum_probs=7.1
Q ss_pred cchhhhccC
Q 040203 45 GAYVAWAAT 53 (202)
Q Consensus 45 ~~Y~~WAs~ 53 (202)
.+|+.|.+.
T Consensus 47 p~Y~PWf~p 55 (74)
T PF02553_consen 47 PDYEPWFEP 55 (74)
T ss_pred CCCCccccc
Confidence 579999865
No 74
>PRK10861 signal peptidase I; Provisional
Probab=30.79 E-value=1.2e+02 Score=27.85 Aligned_cols=16 Identities=25% Similarity=0.466 Sum_probs=12.6
Q ss_pred CCceEeCCEEEEeecC
Q 040203 53 TKNFVVGDVLTFNFVT 68 (202)
Q Consensus 53 ~~tF~vGD~LvF~y~~ 68 (202)
....+.||.++|++..
T Consensus 123 ~~~p~RGDIVVF~~P~ 138 (324)
T PRK10861 123 TGHPKRGDIVVFKYPE 138 (324)
T ss_pred cCCCCCCCEEEEecCC
Confidence 3567889999999864
No 75
>PF12273 RCR: Chitin synthesis regulation, resistance to Congo red; InterPro: IPR020999 RCR proteins are ER membrane proteins that regulate chitin deposition in fungal cell walls. Although chitin, a linear polymer of beta-1,4-linked N-acetylglucosamine, constitutes only 2% of the cell wall it plays a vital role in the overall protection of the cell wall against stress, noxious chemicals and osmotic pressure changes. Congo red is a cell wall-disrupting benzidine-type dye extensively used in many cell wall mutant studies that specifically targets chitin in yeast cells and inhibits growth. RCR proteins render the yeasts resistant to Congo red by diminishing the content of chitin in the cell wall []. RCR proteins are probably regulating chitin synthase III interact directly with ubiquitin ligase Rsp5, and the VPEY motif is necessary for this, via interaction with the WW domains of Rsp5 [].
Probab=30.76 E-value=24 Score=27.50 Aligned_cols=8 Identities=25% Similarity=0.194 Sum_probs=3.5
Q ss_pred cchhhhcc
Q 040203 45 GAYVAWAA 52 (202)
Q Consensus 45 ~~Y~~WAs 52 (202)
..|+.|..
T Consensus 34 ~~gt~w~~ 41 (130)
T PF12273_consen 34 IYGTRWMA 41 (130)
T ss_pred cCCceecC
Confidence 34444443
No 76
>PRK13838 conjugal transfer pilin processing protease TraF; Provisional
Probab=30.59 E-value=33 Score=28.49 Aligned_cols=15 Identities=20% Similarity=0.262 Sum_probs=12.7
Q ss_pred CCceEeCCEEEEeec
Q 040203 53 TKNFVVGDVLTFNFV 67 (202)
Q Consensus 53 ~~tF~vGD~LvF~y~ 67 (202)
...++.||.++|+..
T Consensus 48 ~~~~~rGDiVvf~~P 62 (176)
T PRK13838 48 DRPVAVGDLVFICPP 62 (176)
T ss_pred CCCCCCCcEEEEECC
Confidence 468999999999864
No 77
>PF07731 Cu-oxidase_2: Multicopper oxidase; InterPro: IPR011706 Copper is one of the most prevalent transition metals in living organisms and its biological function is intimately related to its redox properties. Since free copper is toxic, even at very low concentrations, its homeostasis in living organisms is tightly controlled by subtle molecular mechanisms. In eukaryotes, before being transported inside the cell via the high-affinity copper transporters of the CTR family, the copper (II) ion is reduced to copper (I). In blue copper proteins such as cupredoxin, the copper (I) ion form is stabilised by a constrained His2Cys coordination environment. Multicopper oxidases oxidise their substrate by accepting electrons at a mononuclear copper centre and transferring them to a trinuclear copper centre; dioxygen binds to the trinuclear centre and, following the transfer of four electrons, is reduced to two molecules of water []. There are three spectroscopically different copper centres found in multicopper oxidases: type 1 (or blue), type 2 (or normal) and type 3 (or coupled binuclear) [, ]. Multicopper oxidases consist of 2, 3 or 6 of these homologous domains, which also share homology to the cupredoxins azurin and plastocyanin. Structurally, these domains consist of a cupredoxin-like fold, a beta-sandwich consisting of 7 strands in 2 beta-sheets, arranged in a Greek-key beta-barrel []. Multicopper oxidases include: Ceruloplasmin (1.16.3.1 from EC) (ferroxidase), a 6-domain enzyme found in the serum of mammals and birds that oxidizes different inorganic and organic substances; exhibits internal sequence homology that appears to have evolved from the triplication of a Cu-binding domain similar to that of laccase and ascorbate oxidase. Laccase (1.10.3.2 from EC) (urishiol oxidase), a 3-domain enzyme found in fungi and plants, which oxidizes different phenols and diamines. CueO is a laccase found in Escherichia coli that is involved in copper-resistance []. Ascorbate oxidase (1.10.3.3 from EC), a 3-domain enzyme found in higher plants. Nitrite reductase (1.7.2.1 from EC), a 2-domain enzyme containing type-1 and type-2 copper centres [, ]. In addition to the above enzymes there are a number of other proteins that are similar to the multi-copper oxidases in terms of structure and sequence, some of which have lost the ability to bind copper. These include: copper resistance protein A (copA) from a plasmid in Pseudomonas syringae; domain A of (non-copper binding) blood coagulation factors V (Fa V) and VIII (Fa VIII) []; yeast FET3 required for ferrous iron uptake []; yeast hypothetical protein YFL041w; and the fission yeast homologue SpAC1F7.08. This entry represents multicopper oxidase type 2 domains.; GO: 0005507 copper ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3GDC_C 3ZX1_A 2YAH_A 2YAR_A 2YAQ_A 2YAO_A 2YAM_A 2YAF_A 2YAP_A 2XU9_A ....
Probab=30.54 E-value=28 Score=26.49 Aligned_cols=32 Identities=19% Similarity=0.307 Sum_probs=27.3
Q ss_pred EEEeCCCCcEEEEcCCCCCCCCCCeEEEEecC
Q 040203 100 NITLDSAGEHYYICTFGWHCQAGQKLAITVSA 131 (202)
Q Consensus 100 ~v~L~~~G~~YFiC~v~~HC~~GmKl~I~V~~ 131 (202)
.+..+.+|.+.|=|-+..|=..||...|.|..
T Consensus 105 ~~~~~~~G~w~~HCHi~~H~~~GM~~~~~v~~ 136 (138)
T PF07731_consen 105 RFRADNPGPWLFHCHILEHEDNGMMAVFVVGP 136 (138)
T ss_dssp EEEETSTEEEEEEESSHHHHHTT-EEEEEECH
T ss_pred EEEeecceEEEEEEchHHHHhCCCeEEEEEcC
Confidence 55668899999999999999999999998864
No 78
>PLN00115 pollen allergen group 3; Provisional
Probab=30.31 E-value=87 Score=24.64 Aligned_cols=33 Identities=15% Similarity=0.181 Sum_probs=18.6
Q ss_pred CcchhHHHHHHHHHHHHHhhh-cccceEEEecCCC
Q 040203 1 MEKFVSMAFVGLIGAVLLMEC-AEAQTVHVVGDSM 34 (202)
Q Consensus 1 Ma~~~~~~~~~~~~~~~~l~~-~a~a~~~~VGg~~ 34 (202)
|+++..++ .+++++++|..+ +.....|+|++..
T Consensus 1 ~~~~~~~~-~~~~~a~l~~~~~~g~~v~F~V~~gS 34 (118)
T PLN00115 1 MSSLSFLL-LAVALAALFAVGSCATEVTFKVGKGS 34 (118)
T ss_pred CchhHHHH-HHHHHHHHhhhhhcCCceEEEECCCC
Confidence 67776643 344444555444 3336788887543
No 79
>KOG1263 consensus Multicopper oxidases [Secondary metabolites biosynthesis, transport and catabolism]
Probab=30.29 E-value=74 Score=31.38 Aligned_cols=36 Identities=19% Similarity=0.230 Sum_probs=32.2
Q ss_pred EEEeCCCCcEEEEcCCCCCCCCCCeEEEEecCCCCC
Q 040203 100 NITLDSAGEHYYICTFGWHCQAGQKLAITVSATPGS 135 (202)
Q Consensus 100 ~v~L~~~G~~YFiC~v~~HC~~GmKl~I~V~~~~~~ 135 (202)
.|.++.||..+|=|.+..|=..||++...|......
T Consensus 506 rf~adNPG~W~~HCHie~H~~~G~~~~f~V~~~~~~ 541 (563)
T KOG1263|consen 506 RFVADNPGVWLMHCHIEDHLYLGMETVFIVGNGEES 541 (563)
T ss_pred EEEcCCCcEEEEEEecHHHHhccCeEEEEEeCCCcc
Confidence 566789999999999999999999999999986554
No 80
>smart00495 ChtBD3 Chitin-binding domain type 3.
Probab=29.69 E-value=31 Score=21.35 Aligned_cols=18 Identities=33% Similarity=0.739 Sum_probs=14.0
Q ss_pred hhhhccCCceEeCCEEEE
Q 040203 47 YVAWAATKNFVVGDVLTF 64 (202)
Q Consensus 47 Y~~WAs~~tF~vGD~LvF 64 (202)
|..|..++.-..||.+.|
T Consensus 1 ~~~W~~~~~Y~~Gd~V~~ 18 (41)
T smart00495 1 APAWQAGTVYTAGDVVSY 18 (41)
T ss_pred CCccCCCCcCcCCCEEEE
Confidence 457888888888998766
No 81
>PF12071 DUF3551: Protein of unknown function (DUF3551); InterPro: IPR021937 This family of proteins is functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 79 to 104 amino acids in length. This protein has a single completely conserved residue C that may be functionally important.
Probab=29.69 E-value=52 Score=24.26 Aligned_cols=29 Identities=10% Similarity=0.037 Sum_probs=11.9
Q ss_pred CcchhHHHHHH--HHHHHHHhhhcccceEEE
Q 040203 1 MEKFVSMAFVG--LIGAVLLMECAEAQTVHV 29 (202)
Q Consensus 1 Ma~~~~~~~~~--~~~~~~~l~~~a~a~~~~ 29 (202)
|.+.+..++.+ ++++++++...+.+.+|-
T Consensus 1 MR~~~~aa~a~~~~~~~~~~~~~pA~A~dyp 31 (82)
T PF12071_consen 1 MRRLLLAALALLLAAALLALAAAPAQARDYP 31 (82)
T ss_pred ChhHHHHHHHHHHHHHHHhccccchhhcCCc
Confidence 54554443332 222233334445555443
No 82
>MTH00076 COX2 cytochrome c oxidase subunit II; Provisional
Probab=29.26 E-value=67 Score=27.76 Aligned_cols=30 Identities=17% Similarity=0.351 Sum_probs=24.1
Q ss_pred EEEeCCCCcEEEEcCCCCCCCCC---CeEEEEecC
Q 040203 100 NITLDSAGEHYYICTFGWHCQAG---QKLAITVSA 131 (202)
Q Consensus 100 ~v~L~~~G~~YFiC~v~~HC~~G---mKl~I~V~~ 131 (202)
.+..+++|.||..|+. -|..| |++.|.|..
T Consensus 183 ~~~~~~~G~~~g~C~e--~CG~~Hs~M~~~v~vv~ 215 (228)
T MTH00076 183 SFIASRPGVYYGQCSE--ICGANHSFMPIVVEATP 215 (228)
T ss_pred EEEeCCcEEEEEEChh--hcCccccCCceEEEEeC
Confidence 5667899999999985 67765 888888765
No 83
>MTH00051 COX2 cytochrome c oxidase subunit II; Provisional
Probab=29.04 E-value=64 Score=28.00 Aligned_cols=30 Identities=20% Similarity=0.355 Sum_probs=24.4
Q ss_pred EEEeCCCCcEEEEcCCCCCCCCC---CeEEEEecC
Q 040203 100 NITLDSAGEHYYICTFGWHCQAG---QKLAITVSA 131 (202)
Q Consensus 100 ~v~L~~~G~~YFiC~v~~HC~~G---mKl~I~V~~ 131 (202)
.+..+++|.||..|+. -|..| |++.|.|..
T Consensus 187 ~~~~~~~G~y~g~Cse--~CG~~Hs~M~i~v~vv~ 219 (234)
T MTH00051 187 SFFIKRPGVFYGQCSE--ICGANHSFMPIVIEGVS 219 (234)
T ss_pred EEEeCCCEEEEEEChh--hcCcccccCeeEEEEEC
Confidence 5677899999999985 68776 888888765
No 84
>PF06462 Hyd_WA: Propeller; InterPro: IPR006624 Tectonins I and II are two dominant proteins in the nuclei and nuclear matrix from plasmodia of Physarum polycephalum (Slime mold) which encode 217 and 353 amino acids, respectively. Tectonin I is homologous to the C-terminal two-thirds of tectonin II. Both proteins contain six tandem repeats that are each 33-37 amino acids in length and define a new consensus sequence. Homologous repeats are found in L-6, a bacterial lipopolysaccharide-binding lectin from horseshoe crab hemocytes. The repetitive sequences of the tectonins and L-6 are reminiscent of the WD repeats of the beta-subunit of G proteins, suggesting that they form beta-propeller domains. The tectonins may be lectins that function as part of a transmembrane signalling complex during phagocytosis [].
Probab=28.92 E-value=1.1e+02 Score=18.24 Aligned_cols=26 Identities=15% Similarity=0.193 Sum_probs=21.9
Q ss_pred cEEEeCCCCcEEEEcCCCCCCCCCCe
Q 040203 99 TNITLDSAGEHYYICTFGWHCQAGQK 124 (202)
Q Consensus 99 ~~v~L~~~G~~YFiC~v~~HC~~GmK 124 (202)
.++.+++-|.-||=.++...|..|+.
T Consensus 2 ~VWav~~~G~v~~R~Gis~~~P~G~~ 27 (32)
T PF06462_consen 2 QVWAVTSDGSVYFRTGISPSNPEGTS 27 (32)
T ss_pred eEEEEcCCCCEEEECcCCCCCCCCCC
Confidence 35677888999999999999999974
No 85
>PRK10081 entericidin B membrane lipoprotein; Provisional
Probab=28.08 E-value=60 Score=21.82 Aligned_cols=17 Identities=18% Similarity=0.032 Sum_probs=6.5
Q ss_pred CcchhHHHHHHHHHHHH
Q 040203 1 MEKFVSMAFVGLIGAVL 17 (202)
Q Consensus 1 Ma~~~~~~~~~~~~~~~ 17 (202)
|-+++..++++++++++
T Consensus 1 MmKk~i~~i~~~l~~~~ 17 (48)
T PRK10081 1 MVKKTIAAIFSVLVLST 17 (48)
T ss_pred ChHHHHHHHHHHHHHHH
Confidence 43444333333333333
No 86
>MTH00027 COX2 cytochrome c oxidase subunit II; Provisional
Probab=27.08 E-value=82 Score=27.96 Aligned_cols=30 Identities=17% Similarity=0.366 Sum_probs=24.5
Q ss_pred EEEeCCCCcEEEEcCCCCCCCCC---CeEEEEecC
Q 040203 100 NITLDSAGEHYYICTFGWHCQAG---QKLAITVSA 131 (202)
Q Consensus 100 ~v~L~~~G~~YFiC~v~~HC~~G---mKl~I~V~~ 131 (202)
.+..+++|.||-.|+. .|..| |.+.|.|..
T Consensus 217 ~~~~~~~G~y~g~CsE--~CG~~Hs~Mpi~v~vv~ 249 (262)
T MTH00027 217 GFLIKRPGIFYGQCSE--ICGANHSFMPIVVESVS 249 (262)
T ss_pred EEEcCCcEEEEEEcch--hcCcCcCCCeEEEEEEC
Confidence 6667899999999984 68775 888888765
No 87
>COG3627 PhnJ Uncharacterized enzyme of phosphonate metabolism [Inorganic ion transport and metabolism]
Probab=27.00 E-value=38 Score=29.80 Aligned_cols=25 Identities=20% Similarity=0.571 Sum_probs=21.6
Q ss_pred cEEEeCCCCcEEEEcCCCCCCCCCC
Q 040203 99 TNITLDSAGEHYYICTFGWHCQAGQ 123 (202)
Q Consensus 99 ~~v~L~~~G~~YFiC~v~~HC~~Gm 123 (202)
+.|.+++-|-+-|+|+.-+||+.-+
T Consensus 257 DEvi~DD~G~rmfvCSDTD~C~~r~ 281 (291)
T COG3627 257 DEVVLDDKGGRMFVCSDTDFCEQRR 281 (291)
T ss_pred eeeEEcCCCceEEEecCchHHHhHH
Confidence 5788888999999999999998643
No 88
>cd05813 CBM20_genethonin_1 Genethonin-1, C-terminal CBM20 (carbohydrate-binding module, family 20) domain. Genethonin-1 is a human skeletal muscle protein with no known function. It contains a C-terminal CBM20 domain. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. laforin). CBM20 folds as an antiparallel beta-barrel structure with two starch binding sites. These two sites are thought to differ functionally with site 1 acting as the initial starch recognition site and site 2 involved in the specific recognition of appropriate regions of starch.
Probab=26.32 E-value=49 Score=24.00 Aligned_cols=42 Identities=24% Similarity=0.381 Sum_probs=29.1
Q ss_pred eEEEecCC--C-CCCCCCCCCCcchhhhccCCceEeCCEEEEeec
Q 040203 26 TVHVVGDS--M-GWSIPMSGGAGAYVAWAATKNFVVGDVLTFNFV 67 (202)
Q Consensus 26 ~~~~VGg~--~-GW~~~~~~~~~~Y~~WAs~~tF~vGD~LvF~y~ 67 (202)
..|++|+. . .|...-+-...++..|.....+..++.|.|+|-
T Consensus 17 ~l~v~G~~~~LG~W~~~~~l~~~~~~~W~~~v~lp~~~~ieYky~ 61 (95)
T cd05813 17 LVAVTGDHEELGSWHSYIPLQYVKDGFWSASVSLPVDTHVEWKFV 61 (95)
T ss_pred EEEEEcChHHHCCCCccccCcCCCCCCEEEEEEecCCCcEEEEEE
Confidence 34678874 2 488432223356778988888999999888884
No 89
>PF09451 ATG27: Autophagy-related protein 27; InterPro: IPR018939 Autophagy is a degradative transport pathway that delivers cytosolic proteins to the lysosome (vacuole) [] and is induced by starvation []. Cytosolic proteins appear inside the vacuole enclosed in autophagic vesicles. Autophagy significantly differs from other transport pathways by using double membrane layered transport intermediates, called autophagosomes [, ]. The breakdown of vesicular transport intermediates is a unique feature of autophagy []. Autophagy can also function in the elimination of invading bacteria and antigens []. There are more than 25 AuTophaGy-related (ATG) genes that are essential for autophagy, although it is still not known how the autophagosome is made. Atg9 is a potential membrane carrier to deliver lipids that are used to form the vesicle. Atg27 is another transmembrane protein, and is a cycling protein []. It acts as an effector of VPS34 phosphatidylinositol 3-phosphate kinase signalling and regulates the cytoplasm to vacuole transport (Cvt) vesicle formation. It is also required for autophagy-dependent cycling of ATG9.
Probab=26.21 E-value=82 Score=27.63 Aligned_cols=24 Identities=8% Similarity=0.088 Sum_probs=18.3
Q ss_pred cceEEEecCCCCCCCCCCCCCcchhhhcc
Q 040203 24 AQTVHVVGDSMGWSIPMSGGAGAYVAWAA 52 (202)
Q Consensus 24 ~a~~~~VGg~~GW~~~~~~~~~~Y~~WAs 52 (202)
+-..|.+++..||.+- .++.-|.+
T Consensus 222 ~~~n~~~~g~~g~e~i-----P~~dfw~~ 245 (268)
T PF09451_consen 222 SWYNYNRYGARGFELI-----PHFDFWRS 245 (268)
T ss_pred hheeeccCCCCCceec-----ccHhHHHh
Confidence 5678899999999877 34577764
No 90
>PRK13697 cytochrome c6; Provisional
Probab=25.85 E-value=41 Score=24.87 Aligned_cols=14 Identities=36% Similarity=0.700 Sum_probs=8.2
Q ss_pred CcchhHHHHHHHHH
Q 040203 1 MEKFVSMAFVGLIG 14 (202)
Q Consensus 1 Ma~~~~~~~~~~~~ 14 (202)
|.|++.++++++++
T Consensus 1 m~~~~~~~~~~~~~ 14 (111)
T PRK13697 1 MKKILSLVLLGLLL 14 (111)
T ss_pred ChhHHHHHHHHHHH
Confidence 77777665544443
No 91
>PRK10808 outer membrane protein A; Reviewed
Probab=25.20 E-value=77 Score=28.57 Aligned_cols=13 Identities=31% Similarity=0.659 Sum_probs=10.3
Q ss_pred EEEecCCCCCCCC
Q 040203 27 VHVVGDSMGWSIP 39 (202)
Q Consensus 27 ~~~VGg~~GW~~~ 39 (202)
.+-||+..||...
T Consensus 27 g~YvG~~~G~~~~ 39 (351)
T PRK10808 27 TWYTGGKLGWSQY 39 (351)
T ss_pred cEEEeccccceee
Confidence 3779999998755
No 92
>PF05984 Cytomega_UL20A: Cytomegalovirus UL20A protein; InterPro: IPR009245 This family consists of several Cytomegalovirus UL20A proteins. UL20A is thought to be a glycoprotein [].
Probab=24.95 E-value=67 Score=24.27 Aligned_cols=13 Identities=8% Similarity=0.005 Sum_probs=9.1
Q ss_pred CcchhHHHHHHHH
Q 040203 1 MEKFVSMAFVGLI 13 (202)
Q Consensus 1 Ma~~~~~~~~~~~ 13 (202)
|+|++.++-+|++
T Consensus 1 MaRRlwiLslLAV 13 (100)
T PF05984_consen 1 MARRLWILSLLAV 13 (100)
T ss_pred CchhhHHHHHHHH
Confidence 8999866655544
No 93
>cd05808 CBM20_alpha_amylase Alpha-amylase, C-terminal CBM20 (carbohydrate-binding module, family 20) domain. This domain is found in several bacterial and fungal alpha-amylases including the maltopentaose-forming amylases (G5-amylases). Most alpha-amylases have, in addition to the C-terminal CBM20 domain, an N-terminal catalytic domain belonging to glycosyl hydrolase family 13, which hydrolyzes internal alpha-1,4-glucosidic bonds in starch and related saccharides, yielding maltotriose and maltose. Two types of soluble substrates are used by alpha-amylases including long substrates (e.g. amylose) and short substrates (e.g. maltodextrins or maltooligosaccharides). The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. lafo
Probab=24.88 E-value=49 Score=23.71 Aligned_cols=43 Identities=28% Similarity=0.647 Sum_probs=29.1
Q ss_pred ceEEEecCC--C-CCCCCC--CCCCcchhhhccCCceEeCCEEEEeec
Q 040203 25 QTVHVVGDS--M-GWSIPM--SGGAGAYVAWAATKNFVVGDVLTFNFV 67 (202)
Q Consensus 25 a~~~~VGg~--~-GW~~~~--~~~~~~Y~~WAs~~tF~vGD~LvF~y~ 67 (202)
..-+++|+. . .|.... +-...++..|.....+..++.+.|+|-
T Consensus 15 e~l~v~G~~~~lG~W~~~~a~~l~~~~~~~W~~~v~l~~~~~~eYKy~ 62 (95)
T cd05808 15 QNVYVVGNVPELGNWSPANAVALSAATYPVWSGTVDLPAGTAIEYKYI 62 (95)
T ss_pred CEEEEEeCcHHhCCCChhhCccCCCCCCCCEEEEEEeCCCCeEEEEEE
Confidence 345888974 3 497431 112346677988888888999999985
No 94
>PRK10525 cytochrome o ubiquinol oxidase subunit II; Provisional
Probab=24.65 E-value=86 Score=28.69 Aligned_cols=29 Identities=14% Similarity=0.141 Sum_probs=24.1
Q ss_pred EEEeCCCCcEEEEcCCCCCCCCC---CeEEEEec
Q 040203 100 NITLDSAGEHYYICTFGWHCQAG---QKLAITVS 130 (202)
Q Consensus 100 ~v~L~~~G~~YFiC~v~~HC~~G---mKl~I~V~ 130 (202)
.+..+++|.|+-.|.. .|..| |++.|.|.
T Consensus 194 ~~~a~~~G~Y~G~CaE--yCG~gHs~M~f~v~v~ 225 (315)
T PRK10525 194 HLIANEPGTYDGISAS--YSGPGFSGMKFKAIAT 225 (315)
T ss_pred EEEcCCCEEEEEEChh--hcCccccCCeEEEEEE
Confidence 5667899999999984 78875 99998875
No 95
>PLN02792 oxidoreductase
Probab=24.21 E-value=1.1e+02 Score=29.75 Aligned_cols=78 Identities=17% Similarity=0.127 Sum_probs=51.1
Q ss_pred ceEeCCEEEEeecCC---C-------ceEEEec--ccCCCC-----CCCCCCCC----CCccCCCc--EEEeCCCCcEEE
Q 040203 55 NFVVGDVLTFNFVTN---E-------HDVLRVP--KASYDG-----CTSSNPIG----NPITTGPT--NITLDSAGEHYY 111 (202)
Q Consensus 55 tF~vGD~LvF~y~~~---~-------H~V~~V~--~~~Y~~-----C~~s~~~~----~~~s~G~~--~v~L~~~G~~YF 111 (202)
.++-|++++..+.+. . |+.+.|. ...|+. =|..+|.. .+...|-. +|..|.||..+|
T Consensus 406 ~~~~~~~VeiViqn~~~~~HP~HLHGh~F~Vvg~G~G~~~~~~~~~~Nl~nP~~RdTv~v~~~gw~aIRf~aDNPGvW~~ 485 (536)
T PLN02792 406 GAHHNAFLEIIFQNREKIVQSYHLDGYNFWVVGINKGIWSRASRREYNLKDAISRSTTQVYPESWTAVYVALDNVGMWNL 485 (536)
T ss_pred EcCCCCEEEEEEECCCCCCCCeeeCCCceEEEeecCCCCCcccccccCcCCCCccceEEECCCCEEEEEEEeeCCEEEee
Confidence 455677776665531 2 4776663 333542 23344441 12234433 667789999999
Q ss_pred EcCCCCCCCCCCeEEEEecCC
Q 040203 112 ICTFGWHCQAGQKLAITVSAT 132 (202)
Q Consensus 112 iC~v~~HC~~GmKl~I~V~~~ 132 (202)
=|...-|=..||.+.+.|.+.
T Consensus 486 HCh~~~h~~~Gm~~~~~v~~~ 506 (536)
T PLN02792 486 RSQFWARQYLGQQFYLRVYSP 506 (536)
T ss_pred eEcchhccccceEEEEEEccC
Confidence 999999999999999999864
No 96
>PF14326 DUF4384: Domain of unknown function (DUF4384)
Probab=24.17 E-value=95 Score=22.11 Aligned_cols=16 Identities=25% Similarity=0.549 Sum_probs=13.4
Q ss_pred ceEeCCEEEEeecCCC
Q 040203 55 NFVVGDVLTFNFVTNE 70 (202)
Q Consensus 55 tF~vGD~LvF~y~~~~ 70 (202)
.|++||.|.|.+..+.
T Consensus 2 ~~~~Ge~v~~~~~~~~ 17 (83)
T PF14326_consen 2 VYRVGERVRFRVTSNR 17 (83)
T ss_pred cccCCCEEEEEEEeCC
Confidence 6899999999997644
No 97
>KOG1546 consensus Metacaspase involved in regulation of apoptosis [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=23.56 E-value=47 Score=30.91 Aligned_cols=13 Identities=31% Similarity=0.562 Sum_probs=11.6
Q ss_pred ceEeCCEEEEeec
Q 040203 55 NFVVGDVLTFNFV 67 (202)
Q Consensus 55 tF~vGD~LvF~y~ 67 (202)
..+.||+|+|+|.
T Consensus 134 ~aq~gD~LvfHYS 146 (362)
T KOG1546|consen 134 SAQPGDSLVFHYS 146 (362)
T ss_pred cCCCCCEEEEEec
Confidence 5689999999997
No 98
>TIGR01626 ytfJ_HI0045 conserved hypothetical protein YtfJ-family, TIGR01626. This model represents sequences from gamma proteobacteria that are related to the E. coli protein, YtfJ.
Probab=23.52 E-value=62 Score=27.18 Aligned_cols=25 Identities=20% Similarity=0.579 Sum_probs=16.8
Q ss_pred CCCcchhhhccCCceEeCCEEEEeecC
Q 040203 42 GGAGAYVAWAATKNFVVGDVLTFNFVT 68 (202)
Q Consensus 42 ~~~~~Y~~WAs~~tF~vGD~LvF~y~~ 68 (202)
++..+|..|.+. .++ |.+.+.+|=+
T Consensus 44 ~~~~~y~~~~~~-~l~-GKV~lvn~~A 68 (184)
T TIGR01626 44 GKDTVYQPWGSA-ELA-GKVRVVHHIA 68 (184)
T ss_pred CCcccceeccHH-HcC-CCEEEEEEEe
Confidence 367899999754 444 8876666543
No 99
>PF11604 CusF_Ec: Copper binding periplasmic protein CusF; InterPro: IPR021647 CusF is a periplasmic protein involved in copper and silver resistance in Escherichia coil. CusF forms a five-stranded beta-barrel OB fold. Cu(I) binds to H36, M47 and M49 which are conserved residues in the protein []. ; PDB: 2L55_A 2VB3_X 1ZEQ_X 2QCP_X 3E6Z_X 2VB2_X.
Probab=23.23 E-value=54 Score=23.00 Aligned_cols=23 Identities=17% Similarity=0.271 Sum_probs=14.7
Q ss_pred hhhccCCceEeCCEEEEeecCCC
Q 040203 48 VAWAATKNFVVGDVLTFNFVTNE 70 (202)
Q Consensus 48 ~~WAs~~tF~vGD~LvF~y~~~~ 70 (202)
...+.-..|++||.|.|.+....
T Consensus 35 ~~~~~l~~l~~Gd~V~F~~~~~~ 57 (70)
T PF11604_consen 35 ADPVDLAGLKPGDKVRFTFERTD 57 (70)
T ss_dssp -TTSEESS-STT-EEEEEEEEET
T ss_pred CChhhhhcCCCCCEEEEEEEECC
Confidence 33444568999999999997543
No 100
>PF13209 DUF4017: Protein of unknown function (DUF4017)
Probab=23.23 E-value=60 Score=22.54 Aligned_cols=34 Identities=15% Similarity=0.298 Sum_probs=17.1
Q ss_pred CcchhHHHH-HHHHHHHHHhhhcccceEEEecCCCCCCCC
Q 040203 1 MEKFVSMAF-VGLIGAVLLMECAEAQTVHVVGDSMGWSIP 39 (202)
Q Consensus 1 Ma~~~~~~~-~~~~~~~~~l~~~a~a~~~~VGg~~GW~~~ 39 (202)
|++.+-.++ .+++++..++..++.+-+++ ||+..
T Consensus 1 MKni~paL~~Y~IVCiiaii~PaSegYN~v-----gWKlf 35 (60)
T PF13209_consen 1 MKNIIPALLVYIIVCIIAIILPASEGYNTV-----GWKLF 35 (60)
T ss_pred CCcchHHHHHHHHHHHHheeeecccCcccc-----chhhe
Confidence 666653333 34444444444455554443 78854
No 101
>TIGR02771 TraF_Ti conjugative transfer signal peptidase TraF. This protein is found in apparent operons encoding elements of conjugative transfer systems. This family is homologous to a broader family of signal (leader) peptidases such as lepB. This family is present in both Ti-type and I-type conjugative systems.
Probab=22.88 E-value=39 Score=27.89 Aligned_cols=16 Identities=25% Similarity=0.266 Sum_probs=13.6
Q ss_pred cCCceEeCCEEEEeec
Q 040203 52 ATKNFVVGDVLTFNFV 67 (202)
Q Consensus 52 s~~tF~vGD~LvF~y~ 67 (202)
.....+.||.++|+..
T Consensus 43 ~~~~~~rGDiVvf~~p 58 (171)
T TIGR02771 43 SSKPVERGDYVVFCPP 58 (171)
T ss_pred CCCCCCCCcEEEEeCC
Confidence 3568999999999985
No 102
>PF02157 Man-6-P_recep: Mannose-6-phosphate receptor; PDB: 2RLB_A 3K42_A 2RL9_A 3K43_A 1C39_A 1M6P_A 3CY4_A 1KEO_B 2RL7_D 2RL8_B ....
Probab=22.80 E-value=28 Score=31.39 Aligned_cols=36 Identities=25% Similarity=0.400 Sum_probs=0.0
Q ss_pred EEEecCCCCCCCCCCCCCcchhhhccCCceEeCCEEEEeecC
Q 040203 27 VHVVGDSMGWSIPMSGGAGAYVAWAATKNFVVGDVLTFNFVT 68 (202)
Q Consensus 27 ~~~VGg~~GW~~~~~~~~~~Y~~WAs~~tF~vGD~LvF~y~~ 68 (202)
+.+|-+..||..- .+|.-|+.=-.|. -|-..|....
T Consensus 212 qR~v~garG~eqi-----PN~~fW~~l~~l~-~Dg~~f~crs 247 (278)
T PF02157_consen 212 QRFVMGARGWEQI-----PNYSFWAGLPSLV-ADGCDFVCRS 247 (278)
T ss_dssp ------------------------------------------
T ss_pred HHHHhcCchhhhC-----cCHHHHHhhHHHH-HHHHhheecc
Confidence 3456668999987 5899998766665 4776666543
No 103
>PRK13914 invasion associated secreted endopeptidase; Provisional
Probab=22.63 E-value=76 Score=30.79 Aligned_cols=50 Identities=22% Similarity=0.237 Sum_probs=26.2
Q ss_pred HHHhhhcccceEEEecCCCC-CCCCCCC--CCcchhhhc--cCCceEeCCEEEEe
Q 040203 16 VLLMECAEAQTVHVVGDSMG-WSIPMSG--GAGAYVAWA--ATKNFVVGDVLTFN 65 (202)
Q Consensus 16 ~~~l~~~a~a~~~~VGg~~G-W~~~~~~--~~~~Y~~WA--s~~tF~vGD~LvF~ 65 (202)
++++...+.+..|+|-..+- |.+.... ......+|- ....+++||.|+..
T Consensus 18 ~~~~~~~asa~tytVq~GDTLw~IA~~ygvtv~~I~~~N~l~~~~I~~Gq~L~Ip 72 (481)
T PRK13914 18 AFAAPTIASASTVVVEAGDTLWGIAQSKGTTVDAIKKANNLTTDKIVPGQKLQVN 72 (481)
T ss_pred HhhccccccCceEEECCCCCHHHHHHHHCCCHHHHHHHhCCCcccccCCCEEEeC
Confidence 33344556778899953332 6554100 111222332 23468999999764
No 104
>MTH00185 COX2 cytochrome c oxidase subunit II; Provisional
Probab=22.54 E-value=1.1e+02 Score=26.46 Aligned_cols=30 Identities=17% Similarity=0.353 Sum_probs=23.6
Q ss_pred EEEeCCCCcEEEEcCCCCCCCCC---CeEEEEecC
Q 040203 100 NITLDSAGEHYYICTFGWHCQAG---QKLAITVSA 131 (202)
Q Consensus 100 ~v~L~~~G~~YFiC~v~~HC~~G---mKl~I~V~~ 131 (202)
.+..+++|.||..|+. -|..| |.+.|.|..
T Consensus 183 ~~~~~~~G~~~g~Cse--~CG~~Hs~M~~~v~vv~ 215 (230)
T MTH00185 183 TFIISRPGLYYGQCSE--ICGANHSFMPIVVEAVP 215 (230)
T ss_pred EEEeCCcEEEEEEchh--hcCcCcCCCeEEEEEEC
Confidence 4566899999999985 68776 888887764
No 105
>PLN02217 probable pectinesterase/pectinesterase inhibitor
Probab=22.50 E-value=2.3e+02 Score=28.72 Aligned_cols=21 Identities=33% Similarity=0.540 Sum_probs=9.6
Q ss_pred CCCCCCCCCCCCCCCCCCCCC
Q 040203 152 TAPSPNSSTPANCTLAPTSGP 172 (202)
Q Consensus 152 ~~~~p~~s~~~~~~~~~~~~~ 172 (202)
..-.|+.|.|+.-.++|+..+
T Consensus 591 ~~~~~~~~~~~~~~~~~~~~~ 611 (670)
T PLN02217 591 TVVAPSTSPPAGHLGSPPATP 611 (670)
T ss_pred cccCCCCCCcccccCCCCCCc
Confidence 333444444555444444443
No 106
>KOG1263 consensus Multicopper oxidases [Secondary metabolites biosynthesis, transport and catabolism]
Probab=22.23 E-value=3.9e+02 Score=26.45 Aligned_cols=81 Identities=25% Similarity=0.384 Sum_probs=51.0
Q ss_pred CCceEeCCEEEEeecCCC--------ceEEEecccCCCCCCCCCCCCCCccCCC---cEEEeC-CCCcEEEEcCCCCCCC
Q 040203 53 TKNFVVGDVLTFNFVTNE--------HDVLRVPKASYDGCTSSNPIGNPITTGP---TNITLD-SAGEHYYICTFGWHCQ 120 (202)
Q Consensus 53 ~~tF~vGD~LvF~y~~~~--------H~V~~V~~~~Y~~C~~s~~~~~~~s~G~---~~v~L~-~~G~~YFiC~v~~HC~ 120 (202)
......||+|+.+..+.. |-|.|. +..|. |..-...=....|. ..|+++ +.|++||.....-|-.
T Consensus 60 ~I~~~~gD~ivV~v~N~~~~~~sihWhGv~q~-kn~w~--DG~~~TqCPI~Pg~~~tY~F~v~~q~GT~~yh~h~~~~Ra 136 (563)
T KOG1263|consen 60 TINAEEGDTIVVNVVNRLDEPFSIHWHGVRQR-KNPWQ--DGVYITQCPIQPGENFTYRFTVKDQIGTLWYHSHVSWQRA 136 (563)
T ss_pred eEEEEeCCEEEEEEEeCCCCceEEEecccccc-CCccc--cCCccccCCcCCCCeEEEEEEeCCcceeEEEeeccccccc
Confidence 357899999998765432 444443 11221 11000000112333 377777 8899999999999999
Q ss_pred CCCeEEEEecCCCCCC
Q 040203 121 AGQKLAITVSATPGSS 136 (202)
Q Consensus 121 ~GmKl~I~V~~~~~~s 136 (202)
.|+.-.+.|...+...
T Consensus 137 ~G~~G~liI~~~~~~p 152 (563)
T KOG1263|consen 137 TGVFGALIINPRPGLP 152 (563)
T ss_pred cCceeEEEEcCCccCC
Confidence 9999999998866543
No 107
>PF08194 DIM: DIM protein; InterPro: IPR013172 Drosophila immune-induced molecules (DIMs) are short proteins induced during the immune response of Drosophila []. This entry includes DIMs 1 to 4 and DIM23.
Probab=21.93 E-value=1.3e+02 Score=19.02 Aligned_cols=9 Identities=22% Similarity=0.313 Sum_probs=4.6
Q ss_pred ccceEEEec
Q 040203 23 EAQTVHVVG 31 (202)
Q Consensus 23 a~a~~~~VG 31 (202)
...+.++=|
T Consensus 22 ~pG~ViING 30 (36)
T PF08194_consen 22 TPGNVIING 30 (36)
T ss_pred CCCeEEECc
Confidence 355555544
No 108
>TIGR00601 rad23 UV excision repair protein Rad23. All proteins in this family for which functions are known are components of a multiprotein complex used for targeting nucleotide excision repair to specific parts of the genome. In humans, Rad23 complexes with the XPC protein. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=21.49 E-value=6.7e+02 Score=23.43 Aligned_cols=12 Identities=17% Similarity=0.174 Sum_probs=7.7
Q ss_pred CCCeEEEEecCC
Q 040203 121 AGQKLAITVSAT 132 (202)
Q Consensus 121 ~GmKl~I~V~~~ 132 (202)
.|-.|.+.|...
T Consensus 66 e~~~Ivvmv~k~ 77 (378)
T TIGR00601 66 EKDFVVVMVSKP 77 (378)
T ss_pred CCCEEEEEeccC
Confidence 466677777664
No 109
>TIGR03390 ascorbOXfungal L-ascorbate oxidase, fungal type. This model describes a family of fungal ascorbate oxidases, within a larger family of multicopper oxidases that also includes plant ascorbate oxidases (TIGR03388), plant laccases and laccase-like proteins (TIGR03389), and related proteins. The member from Acremonium sp. HI-25 is characterized.
Probab=21.15 E-value=96 Score=30.07 Aligned_cols=33 Identities=15% Similarity=0.217 Sum_probs=29.7
Q ss_pred EEEeCCCCcEEEEcCCCCCCCCCCeEEEEecCC
Q 040203 100 NITLDSAGEHYYICTFGWHCQAGQKLAITVSAT 132 (202)
Q Consensus 100 ~v~L~~~G~~YFiC~v~~HC~~GmKl~I~V~~~ 132 (202)
.|..+.||...|=|-+.-|=..||-+.+.|.+.
T Consensus 502 r~~~dNPG~W~~HCHi~~H~~~Gm~~~~~~~~~ 534 (538)
T TIGR03390 502 RIRVTNPGVWMMHCHILQHMVMGMQTVWVFGDA 534 (538)
T ss_pred EEEcCCCeeEEEeccchhhhhccceEEEEeCCh
Confidence 566788999999999999999999999998764
No 110
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=20.83 E-value=1.9e+02 Score=28.69 Aligned_cols=60 Identities=18% Similarity=0.163 Sum_probs=37.1
Q ss_pred ccCCceEeCCEEEEeecCCCceEEEecccCCCCCCCCCCCC----CCccCCC-cEEEeCCCCcEE
Q 040203 51 AATKNFVVGDVLTFNFVTNEHDVLRVPKASYDGCTSSNPIG----NPITTGP-TNITLDSAGEHY 110 (202)
Q Consensus 51 As~~tF~vGD~LvF~y~~~~H~V~~V~~~~Y~~C~~s~~~~----~~~s~G~-~~v~L~~~G~~Y 110 (202)
.++|+|..-|.+.|+|+.....++.+...+.|.-+.+---. ..-..|+ ..|.|.+.|+-|
T Consensus 210 ~a~ksFFkadkvqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g~s~~V~L~k~GPVh 274 (566)
T KOG2315|consen 210 VANKSFFKADKVQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQGESVSVPLLKEGPVH 274 (566)
T ss_pred hhhccccccceeEEEeccCCceEEEEEEEeecCCCccccccceEEEEEecCceEEEecCCCCCce
Confidence 35789999999999999877777776555555543332110 0112244 367777666554
No 111
>PRK10883 FtsI repressor; Provisional
Probab=20.80 E-value=5.1e+02 Score=24.66 Aligned_cols=84 Identities=10% Similarity=0.029 Sum_probs=0.0
Q ss_pred ceEeCCEEEEeecCCCceEEEe-cccCCCCCCCCCCCCCCccCCCc---EEEeCC-CCcEEEEcCCCC----CCCCCCeE
Q 040203 55 NFVVGDVLTFNFVTNEHDVLRV-PKASYDGCTSSNPIGNPITTGPT---NITLDS-AGEHYYICTFGW----HCQAGQKL 125 (202)
Q Consensus 55 tF~vGD~LvF~y~~~~H~V~~V-~~~~Y~~C~~s~~~~~~~s~G~~---~v~L~~-~G~~YFiC~v~~----HC~~GmKl 125 (202)
.++.||.|+.++.+....-..+ ...-...=...+........|.. .+++++ +|+|||=+...+ +...|+.-
T Consensus 80 r~~~Gd~v~v~v~N~L~~~ttiHwHGl~~~~~~~~g~~~~I~PG~~~~y~f~~~~~aGT~WYH~H~~~~t~~qv~~GL~G 159 (471)
T PRK10883 80 RVWKGDDVKLIYSNRLTEPVSMTVSGLQVPGPLMGGPARMMSPNADWAPVLPIRQNAATCWYHANTPNRMAQHVYNGLAG 159 (471)
T ss_pred EEECCCEEEEEEEeCCCCCCceeECCccCCCCCCCCccccCCCCCeEEEEEecCCCceeeEEccCCCCchhhhHhcCCeE
Q ss_pred EEEecCCCCCCCC
Q 040203 126 AITVSATPGSSPS 138 (202)
Q Consensus 126 ~I~V~~~~~~sp~ 138 (202)
.+.|........+
T Consensus 160 ~lII~d~~~~~~~ 172 (471)
T PRK10883 160 MWLVEDEVSKSLP 172 (471)
T ss_pred EEEEeCCcccccC
No 112
>MTH00080 COX2 cytochrome c oxidase subunit II; Provisional
Probab=20.79 E-value=1.3e+02 Score=26.17 Aligned_cols=30 Identities=23% Similarity=0.403 Sum_probs=24.5
Q ss_pred EEEeCCCCcEEEEcCCCCCCCCC---CeEEEEecC
Q 040203 100 NITLDSAGEHYYICTFGWHCQAG---QKLAITVSA 131 (202)
Q Consensus 100 ~v~L~~~G~~YFiC~v~~HC~~G---mKl~I~V~~ 131 (202)
.+..+++|.||-.|+. -|..| |++.|.|..
T Consensus 186 ~~~~~~~G~y~g~CsE--~CG~~Hs~M~~~v~vv~ 218 (231)
T MTH00080 186 CYSFPMPGVFYGQCSE--ICGANHSFMPIAVEVTL 218 (231)
T ss_pred EEEEcCceEEEEEehh--hcCcCccCCEEEEEEEC
Confidence 5667899999999984 68765 888888765
No 113
>cd05809 CBM20_beta_amylase Beta-amylase, C-terminal CBM20 (carbohydrate-binding module, family 20) domain. Beta-amylase has, in addition to its C-terminal CBM20 domain, an N-terminal catalytic domain belonging to glycosyl hydrolase family 14, which hydrolyzes the alpha-1,4-glucosidic bonds of starch, yielding beta-maltose from the nonreducing end of the substrate. Beta-amylase is found in both plants and microorganisms, however the plant members lack a C-terminal CBM20 domain and are not included in this group. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. laforin). CBM20 folds as an antiparallel beta-barrel structure with two starch binding sites. These two sites are thought to differ functionally with site 1
Probab=20.47 E-value=78 Score=23.30 Aligned_cols=43 Identities=19% Similarity=0.386 Sum_probs=28.6
Q ss_pred ceEEEecCC--C-CCCCCC---CC-CCcchhhhccCCceEeCCEEEEeec
Q 040203 25 QTVHVVGDS--M-GWSIPM---SG-GAGAYVAWAATKNFVVGDVLTFNFV 67 (202)
Q Consensus 25 a~~~~VGg~--~-GW~~~~---~~-~~~~Y~~WAs~~tF~vGD~LvF~y~ 67 (202)
...|++|+. . .|.... .. ....|..|.....+..|..+.|+|-
T Consensus 18 ~~v~v~Gs~~~LG~W~~~~~~~~~~~~~~~~~W~~~~~lp~~~~veyKyv 67 (99)
T cd05809 18 ETVYITGSRAELGNWDTKQYPIQLYYNSHSNDWRGTVHLPAGRNIEFKAI 67 (99)
T ss_pred CEEEEEeChHHhCCCChhhhhhccccCCCCCCEEEEEEecCCCcEEEEEE
Confidence 356889963 3 497531 01 1133577988888999999999984
No 114
>PLN02835 oxidoreductase
Probab=20.44 E-value=1.4e+02 Score=29.16 Aligned_cols=33 Identities=18% Similarity=0.128 Sum_probs=29.6
Q ss_pred EEEeCCCCcEEEEcCCCCCCCCCCeEEEEecCC
Q 040203 100 NITLDSAGEHYYICTFGWHCQAGQKLAITVSAT 132 (202)
Q Consensus 100 ~v~L~~~G~~YFiC~v~~HC~~GmKl~I~V~~~ 132 (202)
.|..|.||...|=|-+..|=..||.+.+.|.+.
T Consensus 482 rF~aDNPG~Wl~HCHi~~H~~~Gm~~~~~V~~~ 514 (539)
T PLN02835 482 LVSLDNQGMWNMRSAIWERQYLGQQFYLRVWNQ 514 (539)
T ss_pred EEECcCCEEeeeeecchhhhhcccEEEEEEccC
Confidence 556688999999999999999999999999974
No 115
>TIGR03388 ascorbase L-ascorbate oxidase, plant type. Members of this protein family are the copper-containing enzyme L-ascorbate oxidase (EC 1.10.3.3), also called ascorbase. This family is found in flowering plants, and shows greater sequence similarity to a family of laccases (EC 1.10.3.2) from plants than to other known ascorbate oxidases.
Probab=20.25 E-value=4.4e+02 Score=25.50 Aligned_cols=76 Identities=14% Similarity=0.201 Sum_probs=50.1
Q ss_pred ceEeCCEEEEeecCC---------Cc-------eEEEec--ccCCC------CCCCCCCCC----CCccCCCc--EEEeC
Q 040203 55 NFVVGDVLTFNFVTN---------EH-------DVLRVP--KASYD------GCTSSNPIG----NPITTGPT--NITLD 104 (202)
Q Consensus 55 tF~vGD~LvF~y~~~---------~H-------~V~~V~--~~~Y~------~C~~s~~~~----~~~s~G~~--~v~L~ 104 (202)
.++.|+++.+.+.+. .| +...|. ...|+ .+|..+|.. .+...|-. .|..+
T Consensus 419 ~~~~g~~Vdivi~n~~~~~~~~~~~HP~HLHGh~F~vlg~g~g~~~~~~~~~~~n~~nP~~RDTv~vp~~gwvvIRF~ad 498 (541)
T TIGR03388 419 RLKFNTTVDVILQNANTLNGNNSETHPWHLHGHDFWVLGYGEGKFRPGVDEKSYNLKNPPLRNTVVIFPYGWTALRFVAD 498 (541)
T ss_pred EecCCCeEEEEEECCccccCCCCCCCcEEecCCceEEEeeccCCCCcccCcccccCCCCCEeceEEeCCCceEEEEEECC
Confidence 445588888776542 24 666663 23353 355666651 12223433 55678
Q ss_pred CCCcEEEEcCCCCCCCCCCeEEEEec
Q 040203 105 SAGEHYYICTFGWHCQAGQKLAITVS 130 (202)
Q Consensus 105 ~~G~~YFiC~v~~HC~~GmKl~I~V~ 130 (202)
.||...|=|-..-|=..||-+.|...
T Consensus 499 NPG~W~~HCHi~~H~~~GM~~~~~e~ 524 (541)
T TIGR03388 499 NPGVWAFHCHIEPHLHMGMGVVFAEG 524 (541)
T ss_pred CCeEeeeeccchhhhhcccEEEEecc
Confidence 89999999999999999999988654
No 116
>PRK01326 prsA foldase protein PrsA; Reviewed
Probab=20.15 E-value=1.4e+02 Score=26.62 Aligned_cols=33 Identities=21% Similarity=0.300 Sum_probs=16.2
Q ss_pred CcchhHHHHHHHHHHHHHhhhcc---cceEEEecCC
Q 040203 1 MEKFVSMAFVGLIGAVLLMECAE---AQTVHVVGDS 33 (202)
Q Consensus 1 Ma~~~~~~~~~~~~~~~~l~~~a---~a~~~~VGg~ 33 (202)
|.+++.+++++++++++|..+.. .....+|+|.
T Consensus 1 ~kkk~~~~~~~~~~~~~lagC~~~~~~~~Vatv~g~ 36 (310)
T PRK01326 1 MKKKLIAGAVTLLSVATLAACSKTNENTKVISMKGD 36 (310)
T ss_pred CchhHHHHHHHHHHHHHHHHhCCCCCCceEEEECCc
Confidence 77666555544444344333321 1345667653
Done!