Query 040203
Match_columns 202
No_of_seqs 131 out of 870
Neff 5.5
Searched_HMMs 29240
Date Mon Mar 25 09:26:28 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040203.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/040203hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1jer_A Cucumber stellacyanin; 100.0 2.2E-42 7.4E-47 276.2 7.8 108 24-134 2-111 (138)
2 1ws8_A Mavicyanin; oxidized fo 100.0 1.8E-40 6E-45 255.4 7.1 106 24-133 1-106 (109)
3 1x9u_A Umecyanin; cupredoxin, 100.0 5.8E-40 2E-44 255.1 8.2 107 26-135 2-109 (116)
4 2cbp_A Cucumber basic protein; 100.0 6.5E-38 2.2E-42 236.0 6.1 96 26-130 1-96 (96)
5 1f56_A Plantacyanin; cupredoxi 100.0 9.3E-34 3.2E-38 211.5 7.1 91 26-130 1-91 (91)
6 1qhq_A Protein (auracyanin); e 99.3 4E-12 1.4E-16 99.0 7.7 97 23-130 14-139 (140)
7 1bxv_A Plastocyanin; copper pr 99.1 4.4E-11 1.5E-15 85.6 5.6 85 27-130 4-91 (91)
8 2cal_A Rusticyanin; iron respi 99.1 7.7E-11 2.6E-15 94.4 6.5 77 53-130 62-154 (154)
9 1pmy_A Pseudoazurin; electron 98.9 2.4E-09 8.1E-14 82.9 8.1 73 53-132 22-95 (123)
10 2aan_A Auracyanin A; cupredoxi 98.9 9E-09 3.1E-13 79.9 10.4 95 24-130 17-139 (139)
11 1paz_A Pseudoazurin precursor; 98.9 3.1E-09 1.1E-13 82.2 7.6 73 53-132 22-95 (123)
12 1plc_A Plastocyanin; electron 98.9 6.3E-09 2.2E-13 75.9 7.8 74 53-130 18-99 (99)
13 1iuz_A Plastocyanin; electron 98.9 2E-09 6.7E-14 78.8 4.7 90 27-130 3-98 (98)
14 2gim_A Plastocyanin; beta shee 98.8 1.4E-08 4.8E-13 74.6 8.9 88 27-130 5-105 (106)
15 3ef4_A Pseudoazurin, blue copp 98.8 1.1E-08 3.6E-13 79.7 8.0 83 31-131 10-95 (124)
16 3tu6_A Pseudoazurin (blue copp 98.8 2.1E-08 7.2E-13 78.1 8.1 74 53-133 24-98 (127)
17 1b3i_A PETE protein, protein ( 98.8 2.7E-08 9.2E-13 72.1 8.1 74 53-130 20-97 (97)
18 3erx_A Pseudoazurin; copper pr 98.8 2.2E-08 7.5E-13 77.6 7.8 72 53-131 22-94 (123)
19 1kdj_A Plastocyanin; electron 98.7 2E-08 6.9E-13 73.4 7.0 88 28-130 3-102 (102)
20 1byp_A Protein (plastocyanin); 98.7 3.1E-08 1.1E-12 72.0 7.4 74 53-130 18-99 (99)
21 2plt_A Plastocyanin; electron 98.7 3.9E-08 1.3E-12 71.2 6.1 90 27-130 3-98 (98)
22 1pcs_A Plastocyanin; electron 98.6 1.3E-07 4.3E-12 68.6 6.6 90 27-130 4-98 (98)
23 3c75_A Amicyanin; copper prote 98.3 1.1E-06 3.9E-11 68.1 6.6 70 53-130 61-132 (132)
24 2ux6_A Pseudoazurin; type-1 co 98.1 3.9E-06 1.3E-10 64.5 6.0 71 53-132 22-93 (122)
25 3ay2_A Lipid modified azurin p 98.1 1.2E-05 4E-10 65.5 8.5 93 26-130 43-166 (167)
26 4hci_A Cupredoxin 1; structura 98.1 5.6E-07 1.9E-11 65.9 0.6 66 53-130 29-100 (100)
27 3cvb_A Plastocyanin; cupredoxi 98.1 7.1E-06 2.4E-10 59.6 6.3 88 27-130 4-104 (105)
28 1cuo_A Protein (azurin ISO-2); 98.1 2.9E-05 9.9E-10 60.4 10.0 91 28-130 5-128 (129)
29 1id2_A Amicyanin; beta barrel, 97.9 3E-05 1E-09 57.5 6.4 70 53-130 35-106 (106)
30 2ov0_A Amicyanin; beta-sandwic 97.8 2.5E-05 8.6E-10 57.6 5.3 66 53-130 34-105 (105)
31 1iko_P Ephrin-B2; greek KEY, g 97.8 4.2E-06 1.4E-10 69.0 0.8 81 55-135 25-144 (178)
32 2iaa_C Azurin; quinoprotein, t 97.8 0.00021 7.2E-09 55.4 10.1 91 28-130 4-127 (128)
33 2ccw_A Azurin II, AZN-2; elect 97.7 0.00017 5.8E-09 56.0 9.3 92 27-130 4-128 (129)
34 1nwp_A Azurin; electron transp 97.7 0.0001 3.6E-09 57.2 7.5 92 27-130 4-128 (128)
35 2vsm_B Ephrin-B2; developmenta 97.0 0.00035 1.2E-08 55.4 3.3 77 55-131 24-139 (140)
36 2x11_B Ephrin-A5; receptor-sig 97.0 0.00076 2.6E-08 55.4 4.9 78 54-134 52-165 (177)
37 1shx_A Ephrin-A5; ephrin signa 96.8 0.0022 7.6E-08 50.7 6.4 77 54-133 23-135 (138)
38 3czu_B Ephrin-A1; ATP-binding, 96.8 0.0015 5.1E-08 53.9 5.5 81 53-137 49-166 (182)
39 1iby_A Nitrosocyanin; RED copp 96.7 0.0018 6.1E-08 47.7 4.9 66 53-130 39-111 (112)
40 2cua_A Protein (CUA); CUA cent 96.3 0.0062 2.1E-07 47.3 5.9 66 53-130 61-134 (135)
41 3d12_B Ephrin-B3; beta propell 96.3 0.0024 8.2E-08 50.7 3.3 75 54-130 22-140 (141)
42 3fsa_A Azurin; copper, cupredo 96.1 0.079 2.7E-06 41.0 10.8 72 55-130 21-125 (125)
43 2dv6_A Nitrite reductase; elec 95.7 0.01 3.4E-07 53.4 4.8 74 53-134 56-135 (447)
44 2wo3_B Ephrin-A2; transferase- 94.2 0.073 2.5E-06 42.8 5.5 77 54-133 32-145 (157)
45 3hei_B Ephrin-A1; EPH receptor 93.5 0.11 3.8E-06 40.6 5.3 76 54-130 22-131 (132)
46 3s8f_B Cytochrome C oxidase su 93.5 0.11 3.9E-06 41.9 5.5 67 52-130 93-167 (168)
47 3sbq_A Nitrous-oxide reductase 91.9 0.16 5.3E-06 48.9 4.9 67 53-131 559-637 (638)
48 1fwx_A Nitrous oxide reductase 91.5 0.17 5.8E-06 48.3 4.7 68 53-132 514-593 (595)
49 1mzy_A Copper-containing nitri 81.0 1.4 4.9E-05 37.8 4.2 75 54-132 66-153 (333)
50 1oe1_A Dissimilatory copper-co 80.0 1.6 5.6E-05 37.5 4.3 75 54-132 67-153 (336)
51 1kbv_A ANIA, major outer membr 73.5 2.3 7.8E-05 36.7 3.4 76 53-132 71-157 (327)
52 2zoo_A Probable nitrite reduct 70.8 1.9 6.5E-05 38.4 2.3 76 53-132 61-147 (442)
53 1oe1_A Dissimilatory copper-co 67.6 4.3 0.00015 34.8 3.8 35 99-133 285-320 (336)
54 3l6w_A Hemocyanin 1; cupredoxi 66.6 5.2 0.00018 37.4 4.3 74 53-130 412-491 (491)
55 2bw4_A Copper-containing nitri 66.4 4.8 0.00017 34.5 3.9 75 54-132 73-159 (340)
56 3gdc_A Multicopper oxidase; be 63.7 9.6 0.00033 32.1 5.2 78 54-133 68-156 (288)
57 3gdc_A Multicopper oxidase; be 63.4 2.5 8.5E-05 35.8 1.4 32 100-131 257-288 (288)
58 1mzy_A Copper-containing nitri 62.4 4 0.00014 35.0 2.5 35 99-133 285-320 (333)
59 1cyx_A CYOA; electron transpor 58.0 7.7 0.00026 32.2 3.4 30 99-130 83-115 (205)
60 3cg8_A Laccase; oxidoreductase 57.1 5.1 0.00017 34.9 2.3 34 104-137 279-312 (343)
61 3hb3_B Cytochrome C oxidase su 56.5 8.4 0.00029 33.6 3.6 31 99-131 231-264 (298)
62 1sdd_A Coagulation factor V; c 56.3 1.5 5.1E-05 37.5 -1.2 77 53-132 216-301 (306)
63 4i1k_A B3 domain-containing tr 54.9 3.5 0.00012 32.1 0.8 26 51-76 112-137 (146)
64 3kw8_A Laccase, putative coppe 54.5 6.8 0.00023 32.8 2.6 38 100-137 231-271 (276)
65 2gsm_B Cytochrome C oxidase su 53.9 9.9 0.00034 32.3 3.5 31 99-131 213-246 (262)
66 1v54_B Cytochrome C oxidase po 51.1 9.7 0.00033 31.7 3.0 30 100-131 183-215 (227)
67 1yel_A AT1G16640; CESG, protei 48.1 6.9 0.00024 28.1 1.4 19 51-69 73-91 (104)
68 3iuw_A Activating signal coint 46.0 7.9 0.00027 27.7 1.4 16 54-69 36-52 (83)
69 2zwn_A Two-domain type laccase 44.0 21 0.00071 30.7 4.1 77 53-131 36-126 (339)
70 1aoz_A Ascorbate oxidase; oxid 43.5 49 0.0017 30.4 6.7 79 53-133 35-125 (552)
71 1fft_B Ubiquinol oxidase; elec 43.1 13 0.00043 32.7 2.6 69 53-130 152-225 (315)
72 1kbv_A ANIA, major outer membr 41.7 15 0.00051 31.5 2.8 35 99-133 274-309 (327)
73 1v10_A Laccase; multicopper bl 41.4 28 0.00096 31.8 4.8 34 100-133 117-151 (521)
74 3tas_A Small laccase, multi-co 40.1 31 0.0011 29.3 4.5 33 105-137 245-277 (313)
75 3t9w_A Small laccase, multi-co 38.9 11 0.00039 31.9 1.6 32 104-135 260-291 (299)
76 1zpu_A Iron transport multicop 38.8 58 0.002 29.9 6.5 79 53-133 35-126 (534)
77 2r7e_A Coagulation factor VIII 36.7 34 0.0012 33.0 4.7 35 99-133 297-331 (742)
78 2q9o_A Laccase-1; multicopper 36.7 30 0.001 32.0 4.1 77 54-132 69-158 (559)
79 2hzs_I RNA polymerase II media 36.5 0.56 1.9E-05 26.4 -4.6 19 53-71 4-22 (27)
80 3sqr_A Laccase; multicopper ox 36.2 60 0.0021 30.4 6.2 34 99-132 155-188 (580)
81 3t6v_A Laccase; beta barrel, o 34.4 65 0.0022 29.4 6.0 34 100-133 97-131 (495)
82 2zoo_A Probable nitrite reduct 33.7 25 0.00087 31.0 3.1 34 100-133 265-299 (442)
83 3g5w_A Multicopper oxidase typ 33.6 29 0.001 29.6 3.4 78 53-132 35-126 (318)
84 1sdd_B Coagulation factor V; c 33.0 18 0.0006 34.0 2.0 32 100-131 296-327 (647)
85 3g5w_A Multicopper oxidase typ 32.6 41 0.0014 28.7 4.1 34 100-133 239-278 (318)
86 2bw4_A Copper-containing nitri 32.3 39 0.0013 28.7 3.9 33 100-132 292-325 (340)
87 2j5w_A Ceruloplasmin, ferroxid 31.9 20 0.00069 36.0 2.3 76 53-133 633-719 (1065)
88 3pxl_A Laccase; 4-copper prote 29.5 60 0.0021 29.7 4.9 34 100-133 96-130 (499)
89 2dv6_A Nitrite reductase; elec 29.3 37 0.0013 29.9 3.4 34 100-133 402-435 (447)
90 1xne_A Hypothetical protein PF 28.6 16 0.00055 27.4 0.7 12 54-65 33-44 (113)
91 2z0t_A Putative uncharacterize 28.0 20 0.00068 26.7 1.1 11 54-64 32-42 (109)
92 2xu9_A Laccase; oxidoreductase 26.8 88 0.003 27.7 5.4 76 55-131 50-135 (439)
93 2kbn_A Conserved protein; nucl 26.4 27 0.00091 25.4 1.6 31 27-65 38-70 (109)
94 3nb3_A Outer membrane protein 26.3 11 0.00036 31.9 -0.8 13 26-38 26-38 (346)
95 2j5w_A Ceruloplasmin, ferroxid 26.1 38 0.0013 34.0 3.1 77 53-134 272-359 (1065)
96 1wid_A DNA-binding protein RAV 24.6 33 0.0011 25.7 1.8 18 51-68 87-104 (130)
97 2zwn_A Two-domain type laccase 24.1 79 0.0027 27.0 4.4 33 100-132 240-278 (339)
98 2k75_A Uncharacterized protein 23.3 24 0.00082 25.5 0.8 29 27-65 41-69 (106)
99 2l55_A SILB,silver efflux prot 23.0 33 0.0011 23.9 1.5 17 52-68 44-60 (82)
100 1hfu_A Laccase 1; oxidoreducta 22.0 1.2E+02 0.0042 27.3 5.4 82 55-137 37-134 (503)
101 2qcp_X Cation efflux system pr 21.6 48 0.0016 22.9 2.1 16 53-68 51-66 (80)
102 2vb2_X Copper protein, cation 21.0 49 0.0017 23.3 2.1 19 50-68 56-74 (88)
103 2uxt_A Protein SUFI, SUFI; oxi 20.6 47 0.0016 29.7 2.3 72 55-131 53-138 (451)
104 1ac0_A Glucoamylase; hydrolase 20.5 22 0.00074 25.5 0.0 43 25-67 21-72 (108)
No 1
>1jer_A Cucumber stellacyanin; electron transport, copper, glycoprotein, hydroxylation; 1.60A {Cucumis sativus} SCOP: b.6.1.1
Probab=100.00 E-value=2.2e-42 Score=276.15 Aligned_cols=108 Identities=46% Similarity=0.824 Sum_probs=100.8
Q ss_pred cceEEEecCCCCCCCCCCCCCcchhhhccCCceEeCCEEEEeecCCCceEEEe-cccCCCCCCCCCCCCCCccCCCcEEE
Q 040203 24 AQTVHVVGDSMGWSIPMSGGAGAYVAWAATKNFVVGDVLTFNFVTNEHDVLRV-PKASYDGCTSSNPIGNPITTGPTNIT 102 (202)
Q Consensus 24 ~a~~~~VGg~~GW~~~~~~~~~~Y~~WAs~~tF~vGD~LvF~y~~~~H~V~~V-~~~~Y~~C~~s~~~~~~~s~G~~~v~ 102 (202)
++++|+|||+.||+++++ ..+|++|+++|+|+|||+|+|+|.++.|||+|| ++++|+.|+.++++ ..+++|+++|+
T Consensus 2 ~a~~~~VGg~~GW~~~~~--~~~Y~~Wa~~~~F~vGD~LvF~y~~~~HsV~~V~~~~~y~~C~~s~p~-~~~~~G~~~v~ 78 (138)
T 1jer_A 2 QSTVHIVGDNTGWSVPSS--PNFYSQWAAGKTFRVGDSLQFNFPANAHNVHEMETKQSFDACNFVNSD-NDVERTSPVIE 78 (138)
T ss_dssp CCCEEETTGGGCSSCCSS--TTHHHHHHHTCCEETTCEEEECCCTTTCCCEEESCHHHHHHTCCTTSC-CCCCCCSCEEE
T ss_pred CceEEEECCcCcCcCCCC--ccchhhhhcCCcCcCCCEEEEeecCCCceEEEeCchhhcCccCCCCcc-ccccCCCeEEE
Confidence 578999999999998832 478999999999999999999999999999999 99999999999999 88999999999
Q ss_pred e-CCCCcEEEEcCCCCCCCCCCeEEEEecCCCC
Q 040203 103 L-DSAGEHYYICTFGWHCQAGQKLAITVSATPG 134 (202)
Q Consensus 103 L-~~~G~~YFiC~v~~HC~~GmKl~I~V~~~~~ 134 (202)
| +++|++||||++++||++||||+|+|.....
T Consensus 79 L~~~~G~~YFicg~~gHC~~GmKl~I~V~~~~~ 111 (138)
T 1jer_A 79 RLDELGMHYFVCTVGTHCSNGQKLSINVVAANA 111 (138)
T ss_dssp ECCSSEEEEEECCSTTTGGGTCEEEEEEECCC-
T ss_pred eccCCcCEEEEcCCCCccccCCEEEEEEcCCCC
Confidence 9 9999999999999999999999999998654
No 2
>1ws8_A Mavicyanin; oxidized form, phytocyanin, cupredoxin, electron transport; 1.60A {Cucurbita pepo} SCOP: b.6.1.1 PDB: 1ws7_A
Probab=100.00 E-value=1.8e-40 Score=255.40 Aligned_cols=106 Identities=40% Similarity=0.766 Sum_probs=98.7
Q ss_pred cceEEEecCCCCCCCCCCCCCcchhhhccCCceEeCCEEEEeecCCCceEEEecccCCCCCCCCCCCCCCccCCCcEEEe
Q 040203 24 AQTVHVVGDSMGWSIPMSGGAGAYVAWAATKNFVVGDVLTFNFVTNEHDVLRVPKASYDGCTSSNPIGNPITTGPTNITL 103 (202)
Q Consensus 24 ~a~~~~VGg~~GW~~~~~~~~~~Y~~WAs~~tF~vGD~LvF~y~~~~H~V~~V~~~~Y~~C~~s~~~~~~~s~G~~~v~L 103 (202)
+|++|+|||+.||++++ ..+|++||++++|+|||+|+|+|.++.|+|+||++++|+.|+.++++ ..+++|++.|+|
T Consensus 1 ~a~~~~VG~~~GW~~~~---~~~Y~~Wa~~~~F~vGD~LvF~y~~~~hsV~~V~~~~y~~C~~~~p~-~~~~~G~~~v~L 76 (109)
T 1ws8_A 1 MATVHKVGDSTGWTTLV---PYDYAKWASSNKFHVGDSLLFNYNNKFHNVLQVDQEQFKSCNSSSPA-ASYTSGADSIPL 76 (109)
T ss_dssp CCCEEETTGGGCSCSSS---CCCHHHHHHTSCBCTTCEEEEECCTTTCCEEEECHHHHHHTCCSSCS-EEECSSEEEEEC
T ss_pred CCcEEEeCCCCCccCCC---CcChhHhhcCCcCcCCCEEEEeecCCCceEEEEChHHCCcccCCCcc-cccCCCCEEEEE
Confidence 36789999999999872 47899999999999999999999999999999999999999999998 889999999999
Q ss_pred CCCCcEEEEcCCCCCCCCCCeEEEEecCCC
Q 040203 104 DSAGEHYYICTFGWHCQAGQKLAITVSATP 133 (202)
Q Consensus 104 ~~~G~~YFiC~v~~HC~~GmKl~I~V~~~~ 133 (202)
+++|++||||++++||++||||+|+|....
T Consensus 77 ~~~G~~yFic~~~gHC~~GmKl~I~V~~~~ 106 (109)
T 1ws8_A 77 KRPGTFYFLCGIPGHCQLGQKVEIKVDPGS 106 (109)
T ss_dssp CSSEEEEEECCSTTTTTTTCEEEEEECC--
T ss_pred CCCcCEEEECCCCCcccCCCEEEEEEcCCC
Confidence 999999999999999999999999998644
No 3
>1x9u_A Umecyanin; cupredoxin, phytocyanin, copper binding site, beta barrel, electron transport; 1.80A {Armoracia rusticana} PDB: 1x9r_A
Probab=100.00 E-value=5.8e-40 Score=255.07 Aligned_cols=107 Identities=44% Similarity=0.811 Sum_probs=96.9
Q ss_pred eEEEecCCCCCCCCCCCCCcchhhhccCCceEeCCEEEEeecCCCceEEEecccCCCCCCCCCCCCCCccCCCcEEEeCC
Q 040203 26 TVHVVGDSMGWSIPMSGGAGAYVAWAATKNFVVGDVLTFNFVTNEHDVLRVPKASYDGCTSSNPIGNPITTGPTNITLDS 105 (202)
Q Consensus 26 ~~~~VGg~~GW~~~~~~~~~~Y~~WAs~~tF~vGD~LvF~y~~~~H~V~~V~~~~Y~~C~~s~~~~~~~s~G~~~v~L~~ 105 (202)
++|+|||+.||+++ ....+|++|+++++|+|||+|+|+|.++.|+|+||++++|+.|+.++++ ..+++|++.|+|++
T Consensus 2 ~~~~VG~~~GW~~~--~~~~~Y~~Wa~~~~f~vGD~L~F~y~~~~HsV~~V~~~~y~~C~~~~~~-~~~~~G~~~v~l~~ 78 (116)
T 1x9u_A 2 EDYDVGGDMEWKRP--SDPKFYITWATGKTFRVGDELEFDFAAGMHDVAVVTKDAFDNCKKENPI-SHMTTPPVKIMLNT 78 (116)
T ss_dssp CEEETTGGGCSSCC--SSTTHHHHHHTTCCEETTCEEEECCCTTTCCEEEECHHHHHTTCCSSCS-EEECSSSEEEECCS
T ss_pred eEEEECCcCcCcCC--CCCcchhhccccccCcCCCEEEEEecCCCCeEEEEChhhcCccCCCCCc-cccCCCCeEEEECC
Confidence 47999999999986 2347999999999999999999999999999999999999999999998 88999999999999
Q ss_pred CCcEEEEcCCCCCCCCCCeEEE-EecCCCCC
Q 040203 106 AGEHYYICTFGWHCQAGQKLAI-TVSATPGS 135 (202)
Q Consensus 106 ~G~~YFiC~v~~HC~~GmKl~I-~V~~~~~~ 135 (202)
+|++||||++++||++||||+| +|......
T Consensus 79 ~G~~yFic~~~~HC~~Gmkl~In~V~~~~~~ 109 (116)
T 1x9u_A 79 TGPQYYICTVGDHCRVGQKLSINVVGAGGAG 109 (116)
T ss_dssp CEEEEEECCSTTTTTTTCEEEEEEECC----
T ss_pred CCCEEEECCCCCccccCCEEEEEEECCCCCC
Confidence 9999999999999999999999 88765443
No 4
>2cbp_A Cucumber basic protein; electron transport, phytocyanin, type 1 copper protein; 1.80A {Cucumis sativus} SCOP: b.6.1.1
Probab=100.00 E-value=6.5e-38 Score=235.99 Aligned_cols=96 Identities=35% Similarity=0.728 Sum_probs=91.5
Q ss_pred eEEEecCCCCCCCCCCCCCcchhhhccCCceEeCCEEEEeecCCCceEEEecccCCCCCCCCCCCCCCccCCCcEEEeCC
Q 040203 26 TVHVVGDSMGWSIPMSGGAGAYVAWAATKNFVVGDVLTFNFVTNEHDVLRVPKASYDGCTSSNPIGNPITTGPTNITLDS 105 (202)
Q Consensus 26 ~~~~VGg~~GW~~~~~~~~~~Y~~WAs~~tF~vGD~LvF~y~~~~H~V~~V~~~~Y~~C~~s~~~~~~~s~G~~~v~L~~ 105 (202)
++|+|||+.||++ +|++|+++++|++||+|+|+|.++.|+|+||++++|+.|+.++++ ..+++|++.|+| +
T Consensus 1 ~~~~VG~~~GW~~-------~y~~Wa~~~~f~vGD~L~F~y~~~~hsV~~v~~~~y~~C~~~~~~-~~~~~G~~~v~L-~ 71 (96)
T 2cbp_A 1 AVYVVGGSGGWTF-------NTESWPKGKRFRAGDILLFNYNPSMHNVVVVNQGGFSTCNTPAGA-KVYTSGRDQIKL-P 71 (96)
T ss_dssp CEEETTGGGCSCS-------SCTTTTTTCCBCTTCEEEEECCTTTCCEEEECHHHHHHTCCCTTC-EEECSSEEEEEC-C
T ss_pred CEEEECCcCCCcc-------ChhhhccCceEcCCCEEEEEecCCCCEEEEECHHHCCccCCCCCc-ccccCCCeEEEe-c
Confidence 4799999999995 499999999999999999999999999999999999999999998 889999999999 8
Q ss_pred CCcEEEEcCCCCCCCCCCeEEEEec
Q 040203 106 AGEHYYICTFGWHCQAGQKLAITVS 130 (202)
Q Consensus 106 ~G~~YFiC~v~~HC~~GmKl~I~V~ 130 (202)
+|++||||++++||++||||+|+|+
T Consensus 72 ~g~~yFic~~~~HC~~Gmkl~I~Vl 96 (96)
T 2cbp_A 72 KGQSYFICNFPGHCQSGMKIAVNAL 96 (96)
T ss_dssp SEEEEEECCSTTTGGGTCEEEEEEC
T ss_pred CCCEEEEcCCCCccccCCEEEEEEC
Confidence 9999999999999999999999985
No 5
>1f56_A Plantacyanin; cupredoxin, copper protein, beta barrel, plant protein; 2.05A {Spinacia oleracea} SCOP: b.6.1.1
Probab=100.00 E-value=9.3e-34 Score=211.49 Aligned_cols=91 Identities=35% Similarity=0.730 Sum_probs=85.5
Q ss_pred eEEEecCCCCCCCCCCCCCcchhhhccCCceEeCCEEEEeecCCCceEEEecccCCCCCCCCCCCCCCccCCCcEEEeCC
Q 040203 26 TVHVVGDSMGWSIPMSGGAGAYVAWAATKNFVVGDVLTFNFVTNEHDVLRVPKASYDGCTSSNPIGNPITTGPTNITLDS 105 (202)
Q Consensus 26 ~~~~VGg~~GW~~~~~~~~~~Y~~WAs~~tF~vGD~LvF~y~~~~H~V~~V~~~~Y~~C~~s~~~~~~~s~G~~~v~L~~ 105 (202)
++|+| ||+++ ++|+++++|++||+|+|+|.++.|+|+||++++|+.|+.++++ ..+++|++.|+|+
T Consensus 1 ~~y~V----gW~~~--------~~Wa~~~~f~vGD~L~F~y~~~~hsV~~v~~~~y~~C~~~~~~-~~~~~G~~~v~L~- 66 (91)
T 1f56_A 1 AVYNI----GWSFN--------VNGARGKSFRAGDVLVFKYIKGQHNVVAVNGRGYASCSAPRGA-RTYSSGQDRIKLT- 66 (91)
T ss_dssp CEEEE----ECSSS--------CBSCTTCCBCTTCEEEEECCBTTBCEEEECHHHHHTTCCCTTC-EEECSSEEEEECC-
T ss_pred CEEEE----eCCCC--------CcCcCCccEeCCCEEEEEccCCCCeEEEECHHHcCCcCCCCCc-ccccCCCcEEEeC-
Confidence 46899 89964 7999999999999999999999999999999999999999998 8899999999996
Q ss_pred CCcEEEEcCCCCCCCCCCeEEEEec
Q 040203 106 AGEHYYICTFGWHCQAGQKLAITVS 130 (202)
Q Consensus 106 ~G~~YFiC~v~~HC~~GmKl~I~V~ 130 (202)
+|++||||++++||++||||+|+|.
T Consensus 67 ~g~~yFic~~~~HC~~Gmkl~I~v~ 91 (91)
T 1f56_A 67 RGQNYFICSFPGHCGGGMKIAINAK 91 (91)
T ss_dssp SEEEEEECCSTTTTTTTCEEEEEEC
T ss_pred CCCeEEEcCCCCccccCCEEEEEEC
Confidence 8999999999999999999999984
No 6
>1qhq_A Protein (auracyanin); electron transfer, cupredoxin, blue copper protein, azurin-L thermophIle; 1.55A {Chloroflexus aurantiacus} SCOP: b.6.1.1 PDB: 1ov8_A
Probab=99.31 E-value=4e-12 Score=98.99 Aligned_cols=97 Identities=22% Similarity=0.315 Sum_probs=65.6
Q ss_pred ccceEEEecCC-CCCCCCCCCCCcchhhhccCCceEeCCEEEEeecC-----CCceEEEeccc-CCCC------------
Q 040203 23 EAQTVHVVGDS-MGWSIPMSGGAGAYVAWAATKNFVVGDVLTFNFVT-----NEHDVLRVPKA-SYDG------------ 83 (202)
Q Consensus 23 a~a~~~~VGg~-~GW~~~~~~~~~~Y~~WAs~~tF~vGD~LvF~y~~-----~~H~V~~V~~~-~Y~~------------ 83 (202)
+...++.|+-. .+|.+.+ +..+++.||+|+|.|.+ ..|+++..... ++..
T Consensus 14 ~~~~~v~V~~~~~~~~F~P-----------~~i~v~~G~tV~~~~~N~~~~~~~H~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (140)
T 1qhq_A 14 TPAQTVEVRAAPDALAFAQ-----------TSLSLPANTVVRLDFVNQNNLGVQHNWVLVNGGDDVAAAVNTAAQNNADA 82 (140)
T ss_dssp CCSEEEEEEBCSSSSSBSC-----------SEEEEETTCEEEEEEEECCSSCCCBCCEEESSSHHHHHHHHHHHHTCGGG
T ss_pred CCCEEEEEEEeCCCceEeC-----------CeEEECCCCEEEEEEECCCCCCCceeEEEeccCcchhhhhhhhhhhcccc
Confidence 34566777654 3588773 35689999999999876 47999887421 1110
Q ss_pred --C---CCCC-----CCCCCccCCCcEEEeCCCCcEEEEcCCCCCCCCCCeEEEEec
Q 040203 84 --C---TSSN-----PIGNPITTGPTNITLDSAGEHYYICTFGWHCQAGQKLAITVS 130 (202)
Q Consensus 84 --C---~~s~-----~~~~~~s~G~~~v~L~~~G~~YFiC~v~~HC~~GmKl~I~V~ 130 (202)
. +..+ .....-.++...|+++++|.|||+|++++||+.|||..|+|.
T Consensus 83 ~~~~~~~~~~~~~~t~~l~pG~~~~~~~~~~~~G~y~f~C~~~~H~~~GM~g~i~V~ 139 (140)
T 1qhq_A 83 LFVPPPDTPNALAWTAMLNAGESGSVTFRTPAPGTYLYICTFPGHYLAGMKGTLTVT 139 (140)
T ss_dssp TTCCCTTCTTEEEECCCBCTTEEEEEEEECCSSEEEEEECCSTTTTTTTCEEEEEEE
T ss_pred cccCccccccccccceeeCCCceeEEEEEeCCCeeEEEEeCCcCHhhcCCEEEEEEc
Confidence 0 0000 000111233457888899999999999999999999999996
No 7
>1bxv_A Plastocyanin; copper protein, electron transfer; 1.80A {Synechococcus elongatus} SCOP: b.6.1.1 PDB: 1bxu_A
Probab=99.14 E-value=4.4e-11 Score=85.61 Aligned_cols=85 Identities=19% Similarity=0.216 Sum_probs=60.9
Q ss_pred EEEecCC-CCCCCCCCCCCcchhhhccCCceEeCCEEEEeecC-CCceEEEecccCCCCCCCCCCCCCCccCC-CcEEEe
Q 040203 27 VHVVGDS-MGWSIPMSGGAGAYVAWAATKNFVVGDVLTFNFVT-NEHDVLRVPKASYDGCTSSNPIGNPITTG-PTNITL 103 (202)
Q Consensus 27 ~~~VGg~-~GW~~~~~~~~~~Y~~WAs~~tF~vGD~LvF~y~~-~~H~V~~V~~~~Y~~C~~s~~~~~~~s~G-~~~v~L 103 (202)
+..+|++ .+|.+.| +..++++||+|+|.+.. ..|+|.......+. . .. .....| ...+++
T Consensus 4 ~v~~~~~~~~~~f~P-----------~~i~v~~Gd~V~~~n~~~~~H~v~~~~~~~~~---~-~~--~~~~~g~~~~~~f 66 (91)
T 1bxv_A 4 AIKMGADNGMLAFEP-----------STIEIQAGDTVQWVNNKLAPHNVVVEGQPELS---H-KD--LAFSPGETFEATF 66 (91)
T ss_dssp EEEESCTTSCSSEES-----------SEEEECTTCEEEEEECSSCCEEEEETTCGGGC---E-EE--EECSTTCEEEEEC
T ss_pred EEEEecCCCccEEeC-----------CEEEECCCCEEEEEECCCCCcEEEEeCCCccC---c-cc--ceeCCCCEEEEEe
Confidence 3456754 4577663 25689999999999874 67999876533221 0 11 122334 468889
Q ss_pred CCCCcEEEEcCCCCCCCCCCeEEEEec
Q 040203 104 DSAGEHYYICTFGWHCQAGQKLAITVS 130 (202)
Q Consensus 104 ~~~G~~YFiC~v~~HC~~GmKl~I~V~ 130 (202)
+++|.|+|+|. .||..||+..|.|.
T Consensus 67 ~~~G~y~~~C~--~H~~~gM~g~i~V~ 91 (91)
T 1bxv_A 67 SEPGTYTYYCE--PHRGAGMVGKIVVQ 91 (91)
T ss_dssp CSCEEEEEECT--TTGGGTCEEEEEEC
T ss_pred CCCEEEEEEeC--CCccCCCEEEEEEC
Confidence 99999999999 79999999999984
No 8
>2cal_A Rusticyanin; iron respiratory electron transport chain, blue protein, electron transport, metal- binding, periplasmic; 1.10A {Thiobacillus ferrooxidans} PDB: 1cur_A 1gy2_A 1a3z_A 1e30_A 1gy1_A 1rcy_A 1a8z_A 2cak_A
Probab=99.12 E-value=7.7e-11 Score=94.37 Aligned_cols=77 Identities=23% Similarity=0.313 Sum_probs=58.4
Q ss_pred CCceEeCCEEEEeecCC----CceEEEecc-cCCCCCCCCCCCC------CCccCCC---c--EEEeCCCCcEEEEcCCC
Q 040203 53 TKNFVVGDVLTFNFVTN----EHDVLRVPK-ASYDGCTSSNPIG------NPITTGP---T--NITLDSAGEHYYICTFG 116 (202)
Q Consensus 53 ~~tF~vGD~LvF~y~~~----~H~V~~V~~-~~Y~~C~~s~~~~------~~~s~G~---~--~v~L~~~G~~YFiC~v~ 116 (202)
..++++||+|+|++.+. .|++..++. ..|..|.....+. .....|. . .|++ ++|.|||+|+++
T Consensus 62 ~i~V~~GD~V~~~~tN~~~~~~H~~~i~~~~~~~~~~~~~~~~~~~~~~~~~i~PG~sgt~t~tft~-~pGtY~y~C~~~ 140 (154)
T 2cal_A 62 TLEIPAGATVDVTFINTNKGFGHSFDITKKGPPYAVMPVIDPIVAGTGFSPVPKDGKFGYTDFTWHP-TAGTYYYVCQIP 140 (154)
T ss_dssp EEEECTTCEEEEEEEECCTTCCCCCEEESCCSCCCSSCCCCSEEEEBCCCCCCBTTBEEEEEEEECC-CSEEEEEECCST
T ss_pred EEEEeCCCEEEEEEEcCCCCeeeEEEEeecCcchhccccccccccccccccccCCCCceEEEEEEEE-CCceEEEECCCC
Confidence 46889999999999753 599999954 5688886554320 0122333 3 5677 999999999999
Q ss_pred CCCCCCCeEEEEec
Q 040203 117 WHCQAGQKLAITVS 130 (202)
Q Consensus 117 ~HC~~GmKl~I~V~ 130 (202)
+||+.|||..|.|.
T Consensus 141 gH~~~GM~G~IiV~ 154 (154)
T 2cal_A 141 GMAATGMFGKIVVK 154 (154)
T ss_dssp TTGGGTCEEEEEEC
T ss_pred CHHHCCCEEEEEEC
Confidence 99999999999884
No 9
>1pmy_A Pseudoazurin; electron transfer(cuproprotein); 1.50A {Methylobacterium extorquens} SCOP: b.6.1.1
Probab=98.94 E-value=2.4e-09 Score=82.86 Aligned_cols=73 Identities=19% Similarity=0.252 Sum_probs=53.6
Q ss_pred CCceEeCCEEEEeecCCCceEEEecccCCCCCCCCCCCCCCccCCC-cEEEeCCCCcEEEEcCCCCCCCCCCeEEEEecC
Q 040203 53 TKNFVVGDVLTFNFVTNEHDVLRVPKASYDGCTSSNPIGNPITTGP-TNITLDSAGEHYYICTFGWHCQAGQKLAITVSA 131 (202)
Q Consensus 53 ~~tF~vGD~LvF~y~~~~H~V~~V~~~~Y~~C~~s~~~~~~~s~G~-~~v~L~~~G~~YFiC~v~~HC~~GmKl~I~V~~ 131 (202)
..++++||+|.|.+....|+|+... .|............|. ..++++++|.|+|+|. .||..||+..|+|..
T Consensus 22 ~i~V~~GdtV~f~n~~~~H~v~~~~-----~~~p~~~~~~~~~pG~t~~~tF~~~G~y~y~C~--~H~~~gM~G~I~V~~ 94 (123)
T 1pmy_A 22 LVRLKPGDSIKFLPTDKGHNVETIK-----GMAPDGADYVKTTVGQEAVVKFDKEGVYGFKCA--PHYMMGMVALVVVGD 94 (123)
T ss_dssp EEEECTTCEEEEECSSSSCCCEECT-----TSSCTTCCCCBCCTTSCEEEECCSCEEEEEECS--TTTTTTCEEEEEESS
T ss_pred EEEECCCCEEEEEECCCCcEEEEec-----ccCCCCccceecCCCCEEEEEeCCCeEEEEEeC--CccccCCEEEEEEcC
Confidence 5689999999999987789998752 1211111101111233 5889999999999998 599999999999986
Q ss_pred C
Q 040203 132 T 132 (202)
Q Consensus 132 ~ 132 (202)
+
T Consensus 95 ~ 95 (123)
T 1pmy_A 95 K 95 (123)
T ss_dssp C
T ss_pred C
Confidence 3
No 10
>2aan_A Auracyanin A; cupredoxin fold, electron transport; 1.85A {Chloroflexus aurantiacus}
Probab=98.91 E-value=9e-09 Score=79.89 Aligned_cols=95 Identities=21% Similarity=0.264 Sum_probs=64.2
Q ss_pred cceEEEecCC-CCCCCCCCCCCcchhhhccCCceEeCCEEEEeecCC----CceEEEeccc------------------C
Q 040203 24 AQTVHVVGDS-MGWSIPMSGGAGAYVAWAATKNFVVGDVLTFNFVTN----EHDVLRVPKA------------------S 80 (202)
Q Consensus 24 ~a~~~~VGg~-~GW~~~~~~~~~~Y~~WAs~~tF~vGD~LvF~y~~~----~H~V~~V~~~------------------~ 80 (202)
+..++.||.. .++.+.+ +..++++||++.|+|.+. .|++...... +
T Consensus 17 ~~~~V~v~~~~~~~~F~p-----------~~i~v~~G~~V~~~~~N~~~~~~H~~~i~~~~~~~~~~~~~~~~~~g~~~~ 85 (139)
T 2aan_A 17 GPVTIEIGSKGEELAFDK-----------TELTVSAGQTVTIRFKNNSAVQQHNWILVKGGEAEAANIANAGLSAGPAAN 85 (139)
T ss_dssp CCEEEEEEBCTTSSSBSC-----------SEEEECTTCEEEEEEECCCSSCCBCCEEESSCHHHHHHHHHHHHHHCGGGT
T ss_pred cCEEEEEEecCCccEEcC-----------CeEEECCCCEEEEEEEeCCCCCCeeEEEeccccccchhhhhhhhccccccc
Confidence 3445667422 3566653 256899999999988753 7999887532 5
Q ss_pred CCCCCCCCCCC--CCccCCC-c--EEEeCCCCcEEEEcCCCCCCCCCCeEEEEec
Q 040203 81 YDGCTSSNPIG--NPITTGP-T--NITLDSAGEHYYICTFGWHCQAGQKLAITVS 130 (202)
Q Consensus 81 Y~~C~~s~~~~--~~~s~G~-~--~v~L~~~G~~YFiC~v~~HC~~GmKl~I~V~ 130 (202)
|..|+..+.+. .....|. . .|+++++|.|+|+|.+++||+ ||+-.|.|.
T Consensus 86 ~~p~~~~~~~~~t~~l~pGet~~v~f~~~~pG~y~f~C~~~~H~~-GM~G~i~V~ 139 (139)
T 2aan_A 86 YLPADKSNIIAESPLANGNETVEVTFTAPAAGTYLYICTVPGHYP-LMQGKLVVN 139 (139)
T ss_dssp TCCSCCTTEEEECCCBCTTCEEEEEEECCSSEEEEEECCSTTTTT-TSEEEEEEC
T ss_pred ccCcccccccccccccCCCCEEEEEEECCCCeEEEEEcCCCChHH-cCEEEEEEC
Confidence 66665332110 1233443 3 444558999999999999999 999999884
No 11
>1paz_A Pseudoazurin precursor; electron transfer(cuproprotein); 1.55A {Alcaligenes faecalis} SCOP: b.6.1.1 PDB: 1pza_A 1pzb_A 1pzc_A 2p80_D 3nyk_A 3paz_A 8paz_A 4paz_A 5paz_A 6paz_A 7paz_A 1py0_A*
Probab=98.90 E-value=3.1e-09 Score=82.19 Aligned_cols=73 Identities=21% Similarity=0.183 Sum_probs=53.1
Q ss_pred CCceEeCCEEEEeecCCCceEEEecccCCCCCCCCCCCCCCccCC-CcEEEeCCCCcEEEEcCCCCCCCCCCeEEEEecC
Q 040203 53 TKNFVVGDVLTFNFVTNEHDVLRVPKASYDGCTSSNPIGNPITTG-PTNITLDSAGEHYYICTFGWHCQAGQKLAITVSA 131 (202)
Q Consensus 53 ~~tF~vGD~LvF~y~~~~H~V~~V~~~~Y~~C~~s~~~~~~~s~G-~~~v~L~~~G~~YFiC~v~~HC~~GmKl~I~V~~ 131 (202)
..++++||+|.|.+....|+|+... .|............| ...++++++|.|+|+|. .||..||+..|+|..
T Consensus 22 ~i~V~~GdtV~f~~~~~~H~v~~~~-----~~~p~~~~~~~~~pG~t~~~tF~~~G~y~y~C~--~H~~~gM~G~I~V~~ 94 (123)
T 1paz_A 22 YIKANPGDTVTFIPVDKGHNVESIK-----DMIPEGAEKFKSKINENYVLTVTQPGAYLVKCT--PHYAMGMIALIAVGD 94 (123)
T ss_dssp EEEECTTCEEEEEESSSSCCCEECT-----TCSCTTCCCCBCCTTCCEEEECCSCEEEEEECT--TTGGGTCEEEEEESS
T ss_pred EEEECCCCEEEEEECCCCeEEEEec-----ccCCCCccceecCCCCEEEEEeCCCEEEEEEeC--CcccCCCEEEEEEcC
Confidence 5689999999999987789998642 222111110011123 35889999999999998 599999999999986
Q ss_pred C
Q 040203 132 T 132 (202)
Q Consensus 132 ~ 132 (202)
+
T Consensus 95 ~ 95 (123)
T 1paz_A 95 S 95 (123)
T ss_dssp S
T ss_pred C
Confidence 3
No 12
>1plc_A Plastocyanin; electron transport; 1.33A {Populus nigra} SCOP: b.6.1.1 PDB: 1pnc_A 1pnd_A 1tkw_A* 2pcy_A 3pcy_A 4pcy_A 5pcy_A 6pcy_A 1jxg_A 1ag6_A 1ylb_B 2pcf_A* 1oow_A 1tef_A 9pcy_A 1teg_A 1byo_A
Probab=98.87 E-value=6.3e-09 Score=75.86 Aligned_cols=74 Identities=19% Similarity=0.296 Sum_probs=52.5
Q ss_pred CCceEeCCEEEEeecCC-CceEEEeccc---CCCCCC--C-CCCCCCCccCCC-cEEEeCCCCcEEEEcCCCCCCCCCCe
Q 040203 53 TKNFVVGDVLTFNFVTN-EHDVLRVPKA---SYDGCT--S-SNPIGNPITTGP-TNITLDSAGEHYYICTFGWHCQAGQK 124 (202)
Q Consensus 53 ~~tF~vGD~LvF~y~~~-~H~V~~V~~~---~Y~~C~--~-s~~~~~~~s~G~-~~v~L~~~G~~YFiC~v~~HC~~GmK 124 (202)
..++++||+|+|++... .|+|...+.. ..+.+. . .... ....|. ..++++++|.|+|+|. .||+.||+
T Consensus 18 ~i~v~~G~tV~~~n~~~~~H~v~~~~~~~p~~~~~~~~~~~~~~~--~~~~G~~~~~tf~~~G~y~~~C~--~H~~~gM~ 93 (99)
T 1plc_A 18 EFSISPGEKIVFKNNAGFPHNIVFDEDSIPSGVDASKISMSEEDL--LNAKGETFEVALSNKGEYSFYCS--PHQGAGMV 93 (99)
T ss_dssp EEEECTTCEEEEEECSSCCBCCEECTTSSCTTCCHHHHCCCTTCC--BCSTTCEEEEECCSCEEEEEECG--GGTTTTCE
T ss_pred EEEECCCCEEEEEECCCCceEEEEeCCCCcccccccccccccCcc--ccCCCCEEEEEECCCceEEEEcC--CCcccCCE
Confidence 56899999999988754 7999876431 112111 0 0111 123343 5889999999999999 79999999
Q ss_pred EEEEec
Q 040203 125 LAITVS 130 (202)
Q Consensus 125 l~I~V~ 130 (202)
..|.|.
T Consensus 94 G~i~V~ 99 (99)
T 1plc_A 94 GKVTVN 99 (99)
T ss_dssp EEEEEC
T ss_pred EEEEEC
Confidence 999984
No 13
>1iuz_A Plastocyanin; electron transport; 1.60A {Ulva pertusa} SCOP: b.6.1.1 PDB: 7pcy_A
Probab=98.86 E-value=2e-09 Score=78.84 Aligned_cols=90 Identities=20% Similarity=0.204 Sum_probs=59.7
Q ss_pred EEEecC-CCCCCCCCCCCCcchhhhccCCceEeCCEEEEeecC-CCceEEEeccc---CCCCCCCCCCCCCCccCCC-cE
Q 040203 27 VHVVGD-SMGWSIPMSGGAGAYVAWAATKNFVVGDVLTFNFVT-NEHDVLRVPKA---SYDGCTSSNPIGNPITTGP-TN 100 (202)
Q Consensus 27 ~~~VGg-~~GW~~~~~~~~~~Y~~WAs~~tF~vGD~LvF~y~~-~~H~V~~V~~~---~Y~~C~~s~~~~~~~s~G~-~~ 100 (202)
+..+|+ +.++.+.| +..++++||+|.|.+.. ..|+|...+.. .++.+...... .....|. ..
T Consensus 3 ~V~m~~~~~~~~F~P-----------~~i~v~~GdtV~~~n~~~~~H~v~~~~~~~p~g~~~~~~~~~~-~~~~~g~~~~ 70 (98)
T 1iuz_A 3 IVKLGGDDGSLAFVP-----------SKISVAAGEAIEFVNNAGFPHNIVFDEDAVPAGVDADAISYDD-YLNSKGETVV 70 (98)
T ss_dssp EEEESCTTSCCSEES-----------SEEEECTTCEEEEEECSSCCEEEEECTTSSCTTCCHHHHCEEE-EECSTTCEEE
T ss_pred EEEEecCCCCcEEeC-----------CEEEECCCCEEEEEECCCCCEEEEEeCCCCccccccccccccc-cccCCCCEEE
Confidence 345554 34576663 25689999999998875 48999876421 12221111000 1133444 47
Q ss_pred EEeCCCCcEEEEcCCCCCCCCCCeEEEEec
Q 040203 101 ITLDSAGEHYYICTFGWHCQAGQKLAITVS 130 (202)
Q Consensus 101 v~L~~~G~~YFiC~v~~HC~~GmKl~I~V~ 130 (202)
++++++|.|+|+|.. ||+.||+..|.|.
T Consensus 71 ~tf~~~G~y~y~C~~--H~~~gM~G~I~V~ 98 (98)
T 1iuz_A 71 RKLSTPGVYGVYCEP--HAGAGMKMTITVQ 98 (98)
T ss_dssp EECCSCEEEEEECTT--TGGGTCEEEEEEC
T ss_pred EEcCCCEEEEEEchh--hccCCCEEEEEEC
Confidence 889999999999995 9999999999884
No 14
>2gim_A Plastocyanin; beta sheet, Cu, helix, electron transport; 1.60A {Anabaena variabilis} SCOP: b.6.1.1 PDB: 1fa4_A 1nin_A 1tu2_A* 2cj3_A
Probab=98.84 E-value=1.4e-08 Score=74.60 Aligned_cols=88 Identities=23% Similarity=0.230 Sum_probs=59.6
Q ss_pred EEEecCC-CCCCCCCCCCCcchhhhccCCceEeCCEEEEeecC-CCceEEEecccCCC-----C--CCCCCCCCCCccCC
Q 040203 27 VHVVGDS-MGWSIPMSGGAGAYVAWAATKNFVVGDVLTFNFVT-NEHDVLRVPKASYD-----G--CTSSNPIGNPITTG 97 (202)
Q Consensus 27 ~~~VGg~-~GW~~~~~~~~~~Y~~WAs~~tF~vGD~LvF~y~~-~~H~V~~V~~~~Y~-----~--C~~s~~~~~~~s~G 97 (202)
+..||.+ .+|.+.| +..++++||+|.|.+.. ..|+|........+ . +... .. ....|
T Consensus 5 ~V~~~~~~~~~~F~P-----------~~i~v~~Gd~V~~~n~~~~~H~~~~~~~~~~~~~g~~~~~~~~~-~~--~~~pG 70 (106)
T 2gim_A 5 TVKLGSDKGLLVFEP-----------AKLTIKPGDTVEFLNNKVPPHNVVFDAALNPAKSADLAKSLSHK-QL--LMSPG 70 (106)
T ss_dssp EEEESCTTCCSSEES-----------SEEEECTTCEEEEEECSSSCCCBEECSSSSTTCCHHHHHHHCBC-SC--CCSTT
T ss_pred EEEEEecCCcceEcC-----------CEEEECCCCEEEEEECCCCCceEEEeCCCCcccccccchhcccc-ce--eeCCC
Confidence 4556643 5677663 25689999999999764 47999865422110 0 0011 11 12334
Q ss_pred -CcEEEe---CCCCcEEEEcCCCCCCCCCCeEEEEec
Q 040203 98 -PTNITL---DSAGEHYYICTFGWHCQAGQKLAITVS 130 (202)
Q Consensus 98 -~~~v~L---~~~G~~YFiC~v~~HC~~GmKl~I~V~ 130 (202)
...+++ +++|.|+|+|. .||+.||+..|.|.
T Consensus 71 ~~~~~~f~~~~~~G~y~y~C~--~H~~~GM~G~i~V~ 105 (106)
T 2gim_A 71 QSTSTTFPADAPAGEYTFYCE--PHRGAGMVGKITVA 105 (106)
T ss_dssp CEEEEECCTTCCSEEEEEECT--TTGGGTCEEEEEEC
T ss_pred CEEEEEEecCCCCceEEEEeC--ChhhcCcEEEEEEc
Confidence 357888 89999999999 89999999999986
No 15
>3ef4_A Pseudoazurin, blue copper protein; electron transfer, electron transport; HET: PO4; 1.18A {Hyphomicrobium denitrificans} SCOP: b.6.1.0
Probab=98.82 E-value=1.1e-08 Score=79.72 Aligned_cols=83 Identities=14% Similarity=0.123 Sum_probs=60.4
Q ss_pred cCCCC--CCCCCCCCCcchhhhccCCceEeCCEEEEeecCCCceEEEecccCCCCCCCCCCCCCCccCC-CcEEEeCCCC
Q 040203 31 GDSMG--WSIPMSGGAGAYVAWAATKNFVVGDVLTFNFVTNEHDVLRVPKASYDGCTSSNPIGNPITTG-PTNITLDSAG 107 (202)
Q Consensus 31 Gg~~G--W~~~~~~~~~~Y~~WAs~~tF~vGD~LvF~y~~~~H~V~~V~~~~Y~~C~~s~~~~~~~s~G-~~~v~L~~~G 107 (202)
+|++| +.+.| +..++++||+|.|.+....|||...+. +-..+........| ...++++++|
T Consensus 10 ~g~~G~~~~F~P-----------~~i~V~~GDTV~f~n~~~~Hnv~~~~~-----~~p~g~~~~~~~pg~t~s~TF~~~G 73 (124)
T 3ef4_A 10 KDDAGNTMVFQP-----------GFVKVEAGDTVKFVPTDKSHNAESVRE-----VWPEGVAPVKGGFSKEVVFNAEKEG 73 (124)
T ss_dssp ECTTSCEEEEES-----------SEEEECTTCEEEEECSSSSCCCEECTT-----TSCTTSCCCBCCTTCCEEEECCSSE
T ss_pred cCCCCceeEEeC-----------CEEEECCCCEEEEEECCCCccEEEeCC-----cCCCCccccccCCCCEEEEEeCCCe
Confidence 44555 77763 367899999999999888999987532 21111110111223 3689999999
Q ss_pred cEEEEcCCCCCCCCCCeEEEEecC
Q 040203 108 EHYYICTFGWHCQAGQKLAITVSA 131 (202)
Q Consensus 108 ~~YFiC~v~~HC~~GmKl~I~V~~ 131 (202)
.|.|+|. .||..||+-.|+|..
T Consensus 74 ~y~Y~C~--~H~~~GM~G~I~V~~ 95 (124)
T 3ef4_A 74 LYVLKCA--PHYGMGMVVLVQVGK 95 (124)
T ss_dssp EEEEECT--TTGGGTCEEEEEESS
T ss_pred EEEEEcC--CCCcCCCEEEEEECC
Confidence 9999998 799999999999987
No 16
>3tu6_A Pseudoazurin (blue copper protein); cupredoxins, beta barrel, electron transfer, redox, electron transport; 2.00A {Sinorhizobium meliloti}
Probab=98.77 E-value=2.1e-08 Score=78.15 Aligned_cols=74 Identities=20% Similarity=0.179 Sum_probs=54.6
Q ss_pred CCceEeCCEEEEeecCCCceEEEecccCCCCCCCCCCCCCCccCC-CcEEEeCCCCcEEEEcCCCCCCCCCCeEEEEecC
Q 040203 53 TKNFVVGDVLTFNFVTNEHDVLRVPKASYDGCTSSNPIGNPITTG-PTNITLDSAGEHYYICTFGWHCQAGQKLAITVSA 131 (202)
Q Consensus 53 ~~tF~vGD~LvF~y~~~~H~V~~V~~~~Y~~C~~s~~~~~~~s~G-~~~v~L~~~G~~YFiC~v~~HC~~GmKl~I~V~~ 131 (202)
..++++||+|.|.+.+..|+|...+. +............| ...++++++|.|+|+|. .||..||+-.|.|..
T Consensus 24 ~i~V~~GDtVtf~n~~~~H~v~~~~~-----~~P~g~~~f~s~pGet~s~TF~~pG~y~y~C~--~H~~~GM~G~I~V~~ 96 (127)
T 3tu6_A 24 VIRAQPGDTVTFVAKDKGHNSALMKG-----GAPEGAETWKGKINEEITVTLSKPGVYMYQCA--PHVGMGMIGAIVVGE 96 (127)
T ss_dssp EEEECTTCEEEEECSSSSCCCEECTT-----CSCTTCCCCBCCTTCCCEEECCSCEEEEEECT--TTGGGTCEEEEEESS
T ss_pred EEEECCCCEEEEEECCCCceEEEccC-----cCCCCccceecCCCCEEEEEeCCCeEEEEEeC--CCCcCCcEEEEEECc
Confidence 66899999999999877899987532 11111110011122 36899999999999999 699999999999987
Q ss_pred CC
Q 040203 132 TP 133 (202)
Q Consensus 132 ~~ 133 (202)
++
T Consensus 97 ~~ 98 (127)
T 3tu6_A 97 PA 98 (127)
T ss_dssp CT
T ss_pred CC
Confidence 54
No 17
>1b3i_A PETE protein, protein (plastocyanin); electron transport, type I copper protein, photosynthesis; NMR {Prochlorothrix hollandica} SCOP: b.6.1.1 PDB: 2b3i_A 2jxm_A*
Probab=98.76 E-value=2.7e-08 Score=72.09 Aligned_cols=74 Identities=22% Similarity=0.255 Sum_probs=52.1
Q ss_pred CCceEeCCEEEEeecC-CCceEEEecccC---CCCCCCCCCCCCCccCCCcEEEeCCCCcEEEEcCCCCCCCCCCeEEEE
Q 040203 53 TKNFVVGDVLTFNFVT-NEHDVLRVPKAS---YDGCTSSNPIGNPITTGPTNITLDSAGEHYYICTFGWHCQAGQKLAIT 128 (202)
Q Consensus 53 ~~tF~vGD~LvF~y~~-~~H~V~~V~~~~---Y~~C~~s~~~~~~~s~G~~~v~L~~~G~~YFiC~v~~HC~~GmKl~I~ 128 (202)
..++++||+|+|.+.. ..|+|....... ...+..... .........++++++|.|+|+|. .||+.||+..|.
T Consensus 20 ~i~v~~G~~V~~~n~~~~~H~~~~~~~~~~~~~~~~~~~~~--~~~~g~~~~~tf~~~G~y~y~C~--~H~~~gM~G~i~ 95 (97)
T 1b3i_A 20 ALSISAGDTVEFVMNKVGPHNVIFDKVPAGESAPALSNTKL--AIAPGSFYSVTLGTPGTYSFYCT--PHRGAGMVGTIT 95 (97)
T ss_dssp EEEECTTCEEEEEECSSCCCCBEEEECCTTSCHHHHCBCCC--CCSCSCCEEEECCSCSEEEEECS--STTTTTCEEEEE
T ss_pred EEEECCCCEEEEEECCCCCeEEEEeCCCCccccccccccce--ecCCCCEEEEEeCCCeEEEEEcc--ChhhcCCEEEEE
Confidence 5689999999999765 379998764321 001111111 11223346889999999999999 899999999999
Q ss_pred ec
Q 040203 129 VS 130 (202)
Q Consensus 129 V~ 130 (202)
|.
T Consensus 96 V~ 97 (97)
T 1b3i_A 96 VE 97 (97)
T ss_dssp EC
T ss_pred EC
Confidence 84
No 18
>3erx_A Pseudoazurin; copper protein, high-resolution, E transport, metal-binding, transport; 1.25A {Paracoccus pantotrophus} SCOP: b.6.1.1 PDB: 1adw_A
Probab=98.75 E-value=2.2e-08 Score=77.61 Aligned_cols=72 Identities=18% Similarity=0.139 Sum_probs=53.7
Q ss_pred CCceEeCCEEEEeecCCCceEEEecccCCCCCCCCCCCCCCcc-CCCcEEEeCCCCcEEEEcCCCCCCCCCCeEEEEecC
Q 040203 53 TKNFVVGDVLTFNFVTNEHDVLRVPKASYDGCTSSNPIGNPIT-TGPTNITLDSAGEHYYICTFGWHCQAGQKLAITVSA 131 (202)
Q Consensus 53 ~~tF~vGD~LvF~y~~~~H~V~~V~~~~Y~~C~~s~~~~~~~s-~G~~~v~L~~~G~~YFiC~v~~HC~~GmKl~I~V~~ 131 (202)
..++++||+|.|.+.+..|+|...+. |-..+....... .....++++++|.|+|+|. .||..||+-.|.|..
T Consensus 22 ~i~V~~GdtV~f~~~~~~H~v~~~~~-----~~P~g~~~f~~~pg~t~s~TF~~pG~y~y~C~--~H~~~GM~G~I~V~~ 94 (123)
T 3erx_A 22 FVRAEPGDVINFVPTDKSHNVEAIKE-----ILPEGVESFKSKINESYTLTVTEPGLYGVKCT--PHFGMGMVGLVQVGD 94 (123)
T ss_dssp EEEECTTEEEEEEESSTTCCCEECTT-----SSCTTCCCCBCCTTCCEEEEECSCEEEEEECG--GGTTTTCEEEEEESS
T ss_pred EEEECCCCEEEEEECCCCceEEEcCC-----cCCCCccceecCCCCEEEEEeCCCeEEEEEeC--CCCcCCcEEEEEECC
Confidence 66899999999999877899986532 111111100111 2346899999999999999 799999999999986
No 19
>1kdj_A Plastocyanin; electron transfer, photosystem, PAI-PAI stacking; 1.70A {Adiantum capillus-veneris} SCOP: b.6.1.1 PDB: 1kdi_A 2bz7_A 2bzc_A
Probab=98.74 E-value=2e-08 Score=73.41 Aligned_cols=88 Identities=19% Similarity=0.228 Sum_probs=59.4
Q ss_pred EEecCC-CCCCCCCCCCCcchhhhccCCceEeCCEEEEeecC-CCceEEEecccCCC----CCC----C-CCCCCCCccC
Q 040203 28 HVVGDS-MGWSIPMSGGAGAYVAWAATKNFVVGDVLTFNFVT-NEHDVLRVPKASYD----GCT----S-SNPIGNPITT 96 (202)
Q Consensus 28 ~~VGg~-~GW~~~~~~~~~~Y~~WAs~~tF~vGD~LvF~y~~-~~H~V~~V~~~~Y~----~C~----~-s~~~~~~~s~ 96 (202)
..||++ .++.+.| +..++++||+|+|.+.. ..|+|.......++ .|. . .+.. ....
T Consensus 3 V~~g~~~~~~~F~P-----------~~i~v~~G~tV~~~n~~~~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~p 69 (102)
T 1kdj_A 3 VEVGDEVGNFKFYP-----------DSITVSAGEAVEFTLVGETGHNIVFDIPAGAPGTVASELKAASMDENDL--LSED 69 (102)
T ss_dssp EEESCTTCCCCEES-----------SEEEECTTCCEEEEECSSSCBCCEECCCTTCCHHHHHHHHHTSCCTTCC--BBTT
T ss_pred EEEecCCCccEEeC-----------CEEEECCCCEEEEEECCCCCeEEEEeCcccccccccchhhcccccccce--ecCC
Confidence 456754 3466552 25689999999998765 47999876432221 110 0 0111 1333
Q ss_pred C-CcEEEeCCCCcEEEEcCCCCCCCCCCeEEEEec
Q 040203 97 G-PTNITLDSAGEHYYICTFGWHCQAGQKLAITVS 130 (202)
Q Consensus 97 G-~~~v~L~~~G~~YFiC~v~~HC~~GmKl~I~V~ 130 (202)
| ...++++++|.|+|+|. .||+.||+..|.|.
T Consensus 70 G~~~~~tf~~~G~y~y~C~--~H~~~gM~G~i~V~ 102 (102)
T 1kdj_A 70 EPSFKAKVSTPGTYTFYCT--PHKSANMKGTLTVK 102 (102)
T ss_dssp BCEEEECCCSCEEEEEECS--TTGGGTCEEEEEEC
T ss_pred CCEEEEEeCCCeEEEEEeC--CCcccCCeEEEEEC
Confidence 4 35788899999999999 89999999999984
No 20
>1byp_A Protein (plastocyanin); electron transfer, photosynthesis, acidic patch, double mutant, electron transport; 1.75A {Silene latifolia subsp} SCOP: b.6.1.1 PDB: 1pla_A 1plb_A
Probab=98.72 E-value=3.1e-08 Score=72.00 Aligned_cols=74 Identities=23% Similarity=0.285 Sum_probs=52.1
Q ss_pred CCceEeCCEEEEeecCC-CceEEEeccc---CCCCCCC---CCCCCCCccCCC-cEEEeCCCCcEEEEcCCCCCCCCCCe
Q 040203 53 TKNFVVGDVLTFNFVTN-EHDVLRVPKA---SYDGCTS---SNPIGNPITTGP-TNITLDSAGEHYYICTFGWHCQAGQK 124 (202)
Q Consensus 53 ~~tF~vGD~LvF~y~~~-~H~V~~V~~~---~Y~~C~~---s~~~~~~~s~G~-~~v~L~~~G~~YFiC~v~~HC~~GmK 124 (202)
..++++||+|+|++... .|+|...... .++.+.. .... ....|. ..++++++|.|.|+|. .||+.||+
T Consensus 18 ~i~v~~G~tV~~~n~~~~~H~~~~~~~~~p~g~~~~~~~~~~~~~--~~~~G~~~~~~f~~~G~y~~~C~--~H~~~gM~ 93 (99)
T 1byp_A 18 DLSIASGEKITFKNNAGFPHNDLFDKKEVPAGVDVTKISMPEEDL--LNAPGEEYSVTLTEKGTYKFYCA--PHAGAGMV 93 (99)
T ss_dssp EEEECTTEEEEEEECSSCCBCCEECTTSSCTTCCHHHHSCCTTCC--BCSTTCEEEEEECSCEEEEEECG--GGTTTTCE
T ss_pred EEEECCCCEEEEEECCCCcceEEEeCCCCccccccccccccccce--eeCCCCEEEEEeCCCcEEEEEcC--CccccCCE
Confidence 46899999999987753 7999876421 1222110 0111 233443 5888999999999999 79999999
Q ss_pred EEEEec
Q 040203 125 LAITVS 130 (202)
Q Consensus 125 l~I~V~ 130 (202)
..|.|.
T Consensus 94 G~i~V~ 99 (99)
T 1byp_A 94 GKVTVN 99 (99)
T ss_dssp EEEEEC
T ss_pred EEEEEC
Confidence 999984
No 21
>2plt_A Plastocyanin; electron transport; 1.50A {Chlamydomonas reinhardtii} SCOP: b.6.1.1
Probab=98.65 E-value=3.9e-08 Score=71.23 Aligned_cols=90 Identities=21% Similarity=0.195 Sum_probs=59.3
Q ss_pred EEEecCC-CCCCCCCCCCCcchhhhccCCceEeCCEEEEeecCC-CceEEEeccc---CCCCCCCCCCCCCCccCCC-cE
Q 040203 27 VHVVGDS-MGWSIPMSGGAGAYVAWAATKNFVVGDVLTFNFVTN-EHDVLRVPKA---SYDGCTSSNPIGNPITTGP-TN 100 (202)
Q Consensus 27 ~~~VGg~-~GW~~~~~~~~~~Y~~WAs~~tF~vGD~LvF~y~~~-~H~V~~V~~~---~Y~~C~~s~~~~~~~s~G~-~~ 100 (202)
+..+|++ .++.+.| +..++++||+|+|.+... .|+|...... .++.+...... .....|. ..
T Consensus 3 ~V~m~~~~~~~~F~P-----------~~i~v~~G~~V~~~n~~~~~H~~~~~~~~~p~~~~~~~~~~~~-~~~~pG~~~~ 70 (98)
T 2plt_A 3 TVKLGADSGALEFVP-----------KTLTIKSGETVNFVNNAGFPHNIVFDEDAIPSGVNADAISRDD-YLNAPGETYS 70 (98)
T ss_dssp EEEESCTTCCSSEES-----------SEEEECTTCEEEEEECSSCCEEEEECGGGSCTTCCHHHHCEEE-EECSTTCEEE
T ss_pred EEEEecCCCCceEeC-----------CEEEECCCCEEEEEECCCCceEEEEeCCCCCCccccccccccc-eecCCCCEEE
Confidence 4556643 3466653 246899999999987754 7999876421 12211100000 1123344 47
Q ss_pred EEeCCCCcEEEEcCCCCCCCCCCeEEEEec
Q 040203 101 ITLDSAGEHYYICTFGWHCQAGQKLAITVS 130 (202)
Q Consensus 101 v~L~~~G~~YFiC~v~~HC~~GmKl~I~V~ 130 (202)
++++++|.|+|+|. .||+.||+..|.|.
T Consensus 71 ~tf~~~G~y~y~C~--~H~~~gM~G~i~V~ 98 (98)
T 2plt_A 71 VKLTAAGEYGYYCE--PHQGAGMVGKIIVQ 98 (98)
T ss_dssp EECCSCEEEEEECG--GGGGGTCEEEEEEC
T ss_pred EEeCCCeEEEEEcC--CccccCCeEEEEEC
Confidence 88999999999999 79999999999884
No 22
>1pcs_A Plastocyanin; electron transport; 2.15A {Synechocystis SP} SCOP: b.6.1.1 PDB: 1m9w_A 1j5c_A 1j5d_A 1jxd_A 1jxf_A
Probab=98.56 E-value=1.3e-07 Score=68.63 Aligned_cols=90 Identities=16% Similarity=0.149 Sum_probs=58.1
Q ss_pred EEEecCC-CCCCCCCCCCCcchhhhccCCceEeCCEEEEeecC-CCceEEEecccC--CCCCCCCCCCCCCccCCC-cEE
Q 040203 27 VHVVGDS-MGWSIPMSGGAGAYVAWAATKNFVVGDVLTFNFVT-NEHDVLRVPKAS--YDGCTSSNPIGNPITTGP-TNI 101 (202)
Q Consensus 27 ~~~VGg~-~GW~~~~~~~~~~Y~~WAs~~tF~vGD~LvF~y~~-~~H~V~~V~~~~--Y~~C~~s~~~~~~~s~G~-~~v 101 (202)
+..+|.+ .++.+.| +..++++||+|+|.+.. ..|+|...+... .+..+..... .....|. ..+
T Consensus 4 ~V~~~~~~~~~~F~P-----------~~i~v~~G~~V~~~n~~~~~H~~~~~~~~~pg~~~~~~~~~~-~~~~pG~~~~~ 71 (98)
T 1pcs_A 4 TVKMGSDSGALVFEP-----------STVTIKAGEEVKWVNNKLSPHNIVFDADGVPADTAAKLSHKG-LLFAAGESFTS 71 (98)
T ss_dssp EEEESCTTSCSSEES-----------SEEEECTTCEEEEEECSSCCEEEEECCSSSCHHHHHHHCEEE-EECSTTCEEEE
T ss_pred EEEEecCCCccEEeC-----------CEEEECCCCEEEEEECCCCCcEEEEeCCCCCccccccccccc-cccCCCCEEEE
Confidence 4456643 4566653 24689999999999765 479998754210 0000000000 1122343 578
Q ss_pred EeCCCCcEEEEcCCCCCCCCCCeEEEEec
Q 040203 102 TLDSAGEHYYICTFGWHCQAGQKLAITVS 130 (202)
Q Consensus 102 ~L~~~G~~YFiC~v~~HC~~GmKl~I~V~ 130 (202)
+++++|.|+|+|. .||..||+..|.|.
T Consensus 72 tf~~~G~y~~~C~--~H~~~gM~G~i~V~ 98 (98)
T 1pcs_A 72 TFTEPGTYTYYCE--PHRGAGMVGKVVVE 98 (98)
T ss_dssp ECCSCEEEEEECG--GGTTTTCEEEEEEC
T ss_pred EcCCCeEEEEEcC--CccccCCeEEEEEC
Confidence 8899999999999 79999999999984
No 23
>3c75_A Amicyanin; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=98.30 E-value=1.1e-06 Score=68.05 Aligned_cols=70 Identities=19% Similarity=0.146 Sum_probs=47.6
Q ss_pred CCceEeCCEEEEeecCC-CceEEEecccCCCCCCCCCCCCCCccCCC-cEEEeCCCCcEEEEcCCCCCCCCCCeEEEEec
Q 040203 53 TKNFVVGDVLTFNFVTN-EHDVLRVPKASYDGCTSSNPIGNPITTGP-TNITLDSAGEHYYICTFGWHCQAGQKLAITVS 130 (202)
Q Consensus 53 ~~tF~vGD~LvF~y~~~-~H~V~~V~~~~Y~~C~~s~~~~~~~s~G~-~~v~L~~~G~~YFiC~v~~HC~~GmKl~I~V~ 130 (202)
..++++||+|.|..... .|+|...+... ..-..... ....|. ..++++++|.|.|+|.. |. ||+-.|.|.
T Consensus 61 ~i~V~~GdtV~~~N~d~~~H~v~~~~~~~-g~~~~~s~---~l~pG~t~~~tF~~~G~y~y~C~~--H~--gM~G~I~V~ 132 (132)
T 3c75_A 61 EVTIKAGETVYWVNGEVMPHNVAFKKGIV-GEDAFRGE---MMTKDQAYAITFNEAGSYDYFCTP--HP--FMRGKVIVE 132 (132)
T ss_dssp EEEECTTCEEEEEECSSSCBCCEECTTTS-SSSCEECC---CBCTTEEEEEEECSCEEEEEECSS--CT--TCEEEEEEC
T ss_pred EEEECCCCEEEEEECCCCceEEEEeCCCC-Cccccccc---ccCCCCEEEEEcCCCEEEEEEeCC--Cc--CCEEEEEEC
Confidence 56889999999986543 69998754221 00000111 122343 57888999999999996 76 999999884
No 24
>2ux6_A Pseudoazurin; type-1 copper, metal-binding, redox potential, copper, transport, cupredoxin, periplasmic, electron transport; 1.3A {Achromobacter cycloclastes} PDB: 2ux7_A 2uxf_A 2uxg_A 1bqk_A 1bqr_A 1zia_A 1zib_A 2jkw_A
Probab=98.12 E-value=3.9e-06 Score=64.48 Aligned_cols=71 Identities=17% Similarity=0.142 Sum_probs=50.5
Q ss_pred CCceEeCCEEEEeecCCCceEEEecccCCCCCCCCCCCCCCccCC-CcEEEeCCCCcEEEEcCCCCCCCCCCeEEEEecC
Q 040203 53 TKNFVVGDVLTFNFVTNEHDVLRVPKASYDGCTSSNPIGNPITTG-PTNITLDSAGEHYYICTFGWHCQAGQKLAITVSA 131 (202)
Q Consensus 53 ~~tF~vGD~LvF~y~~~~H~V~~V~~~~Y~~C~~s~~~~~~~s~G-~~~v~L~~~G~~YFiC~v~~HC~~GmKl~I~V~~ 131 (202)
..++++||+|.|.+....|+|..... |-...........| ...++++++|.|+|+|.. |+. |+-.|.|..
T Consensus 22 ~i~V~~GdtV~f~n~d~~H~v~~~~~-----~~p~~~~~~~~~~g~t~~~tF~~~G~y~y~C~~--H~~--M~G~I~V~~ 92 (122)
T 2ux6_A 22 SLKVAPGDTVTFIPTDKGHNVETIKG-----MIPDGAEAFKSKINENYKVTFTAPGVYGVKCTP--HPF--MVGVVQVGD 92 (122)
T ss_dssp EEEECTTEEEEEEESSSSCCCEECTT-----CSCTTCCCCBCCTTCCEEEEECSCEEEEEEETT--EEE--EEEEEEESS
T ss_pred EEEECCCCEEEEEECCCCcEEEEccc-----ccCCCcceeecCCCCEEEEEeCCCEEEEEEeCC--Ccc--CEEEEEEeC
Confidence 56889999999998777899987541 11111110011122 358899999999999996 888 999999986
Q ss_pred C
Q 040203 132 T 132 (202)
Q Consensus 132 ~ 132 (202)
.
T Consensus 93 ~ 93 (122)
T 2ux6_A 93 A 93 (122)
T ss_dssp S
T ss_pred C
Confidence 3
No 25
>3ay2_A Lipid modified azurin protein; beta sandwich, bacterial protein, anticancer, anti-HIV/AIDS, antiparasitic activity, antitumor protein; 1.90A {Neisseria gonorrhoeae}
Probab=98.08 E-value=1.2e-05 Score=65.50 Aligned_cols=93 Identities=16% Similarity=0.212 Sum_probs=59.0
Q ss_pred eEEEecCCCCCCCCCCCCCcchhhhccCCce-EeCCEEEEeecC-C-------CceEEEecccC---------------C
Q 040203 26 TVHVVGDSMGWSIPMSGGAGAYVAWAATKNF-VVGDVLTFNFVT-N-------EHDVLRVPKAS---------------Y 81 (202)
Q Consensus 26 ~~~~VGg~~GW~~~~~~~~~~Y~~WAs~~tF-~vGD~LvF~y~~-~-------~H~V~~V~~~~---------------Y 81 (202)
.++.|+..+++.+.+ +..++ +.||.|.|.|.+ + .||++..+..+ |
T Consensus 43 ~~V~I~~~d~m~F~P-----------~~itV~kaG~~Vtv~~~N~g~~p~~~m~Hn~vi~~~~~~~~v~~~~m~~~~~~~ 111 (167)
T 3ay2_A 43 CAATVESNDNMQFNT-----------KDIQVSKACKEFTITLKHTGTQPKASMGHNLVIAKAEDMDGVFKDGVGAADTDY 111 (167)
T ss_dssp CEEEEEECTTSCBSC-----------SEEEEETTCSSEEEEEEECSCSCHHHHCBCCEEEEGGGHHHHHHHHGGGGGGTT
T ss_pred eEEEEEeCCCceEec-----------ceEEEecCCCEEEEEEEECCCCccccccceEEeccCcchhhhHHHhhhcccccc
Confidence 456677666777763 24466 679987777653 2 29998875432 2
Q ss_pred CCCCCCCCC--CCCccCCC-cEEEeC----CCCcEEEEcCCCCCCCCCCeEEEEec
Q 040203 82 DGCTSSNPI--GNPITTGP-TNITLD----SAGEHYYICTFGWHCQAGQKLAITVS 130 (202)
Q Consensus 82 ~~C~~s~~~--~~~~s~G~-~~v~L~----~~G~~YFiC~v~~HC~~GmKl~I~V~ 130 (202)
..=+..+.+ ......|. ..|+++ ++|.|+|+|++++|=+ |||-.|.|.
T Consensus 112 v~~~d~~vl~~t~~l~pGet~svtf~~~~lkpG~Y~f~Ct~PgH~~-gM~G~i~V~ 166 (167)
T 3ay2_A 112 VKPDDARVVAHTKLIGGGEESSLTLDPAKLADGDYKFACTFPGHGA-LMNGKVTLV 166 (167)
T ss_dssp SCTTCTTEEEECCCBCTTCEEEEEECGGGGTTSCEEEECCSTTGGG-TSEEEEEEE
T ss_pred ccccccchhccceeeCCCCEEEEEEecCCCCCcEEEEEcCCCCchh-cCEEEEEEe
Confidence 111111100 01233444 356665 7999999999999998 999999986
No 26
>4hci_A Cupredoxin 1; structural genomics, niaid, national institute of allergy AN infectious diseases; 1.63A {Bacillus anthracis} PDB: 4hcg_A 4hcf_A
Probab=98.08 E-value=5.6e-07 Score=65.94 Aligned_cols=66 Identities=20% Similarity=0.281 Sum_probs=46.1
Q ss_pred CCceEeCCEEEEeecCC---CceEEEecccCCCCCCCCCCCCCCccCCC---cEEEeCCCCcEEEEcCCCCCCCCCCeEE
Q 040203 53 TKNFVVGDVLTFNFVTN---EHDVLRVPKASYDGCTSSNPIGNPITTGP---TNITLDSAGEHYYICTFGWHCQAGQKLA 126 (202)
Q Consensus 53 ~~tF~vGD~LvF~y~~~---~H~V~~V~~~~Y~~C~~s~~~~~~~s~G~---~~v~L~~~G~~YFiC~v~~HC~~GmKl~ 126 (202)
..++++||++.|.+.+. .|++..-. ...+ .....|. ..++++++|.|.|+|. .||..||+-.
T Consensus 29 ~i~v~~G~tV~~~~~n~d~~~H~~~~~~-~~~~---------~~~~pg~~~~~~~t~~~~G~Y~y~C~--~H~~~gM~G~ 96 (100)
T 4hci_A 29 VITIPINESTTLLLKNKGKSEHTFTIKK-LGID---------VVVESGKEKNITVKPKSAGTYELICR--YHLLKGMEGK 96 (100)
T ss_dssp EEEECTTSCEEEEEEECSSSCEEEEEGG-GTEE---------EEECTTCEEEEEECCCSCEEEEEECT--TTGGGTCEEE
T ss_pred EEEECCCCEEEEEEEcCCCceEEEEEec-CCcc---------eeecCCcceeEEEecccCceEEEECc--cccCCCCEEE
Confidence 57999999999987542 47765422 1110 1122233 3566689999999997 6999999999
Q ss_pred EEec
Q 040203 127 ITVS 130 (202)
Q Consensus 127 I~V~ 130 (202)
|.|+
T Consensus 97 i~Ve 100 (100)
T 4hci_A 97 VIVK 100 (100)
T ss_dssp EEEC
T ss_pred EEEC
Confidence 9984
No 27
>3cvb_A Plastocyanin; cupredoxin, SELF assembly, copper, electron transport, metal-binding, transport; 1.40A {Phormidium laminosum} PDB: 3cvc_A 3cvd_A 2w8c_A 2w88_A 2q5b_A 1baw_A 3bqv_A
Probab=98.07 E-value=7.1e-06 Score=59.58 Aligned_cols=88 Identities=23% Similarity=0.206 Sum_probs=56.5
Q ss_pred EEEecCC-CCCCCCCCCCCcchhhhccCCceEeCCEEEEeecC-CCceEEEecccCCCCCC----C---CCCCCCCccCC
Q 040203 27 VHVVGDS-MGWSIPMSGGAGAYVAWAATKNFVVGDVLTFNFVT-NEHDVLRVPKASYDGCT----S---SNPIGNPITTG 97 (202)
Q Consensus 27 ~~~VGg~-~GW~~~~~~~~~~Y~~WAs~~tF~vGD~LvF~y~~-~~H~V~~V~~~~Y~~C~----~---s~~~~~~~s~G 97 (202)
+..||.+ .+..+.++ ..+++.||+|+|.... ..|+|..-... + .+. . .... .....|
T Consensus 4 ~V~~~~~~~~~~f~p~-----------~i~v~~Gd~V~~~N~~~~~H~v~~~~~~-~-~~~~g~~~~~~~~~~-~~i~pG 69 (105)
T 3cvb_A 4 TVKMGADSGLFQFEPA-----------NVTVHPGDTVKWVNNKLPPHNILFDDKQ-V-PGASKELADKLSHSQ-LMFSPG 69 (105)
T ss_dssp EEEESCTTCCSCEESS-----------EEEECTTEEEEEEECSSCCEEEEECTTS-S-GGGCHHHHHHHCEEE-EECSTT
T ss_pred EEEEeecCCccEEeCC-----------EEEEcCCCEEEEEECCCCCCeEEEeCCC-C-Ccccccccccccccc-cccCCC
Confidence 4456643 45666532 4588999999998653 47998765311 1 110 0 0000 012233
Q ss_pred C-cEEEe---CCCCcEEEEcCCCCCCCCCCeEEEEec
Q 040203 98 P-TNITL---DSAGEHYYICTFGWHCQAGQKLAITVS 130 (202)
Q Consensus 98 ~-~~v~L---~~~G~~YFiC~v~~HC~~GmKl~I~V~ 130 (202)
. ..+++ +++|.|+|.|. .|+..||+-.|.|.
T Consensus 70 ~~~~~~f~~~~~~G~y~y~C~--~H~~~GM~G~i~V~ 104 (105)
T 3cvb_A 70 ESYEITFSSDFPAGTYTYYCA--PHRGAGMVGKITVE 104 (105)
T ss_dssp CEEEEEECTTSCSEEEEEECT--TTGGGTCEEEEEEC
T ss_pred CeEEEEEecCCCCeeEEEEeC--CchhcCCEEEEEEc
Confidence 3 46777 78999999999 79999999999985
No 28
>1cuo_A Protein (azurin ISO-2); beta barrel, periplasmic, electron transport; 1.60A {Methylomonas SP} SCOP: b.6.1.1 PDB: 1uat_A
Probab=98.06 E-value=2.9e-05 Score=60.36 Aligned_cols=91 Identities=14% Similarity=0.181 Sum_probs=57.4
Q ss_pred EEecCCCCCCCCCCCCCcchhhhccCCceEeC-CEEEEeecC-C-------CceEEEeccc----------------CCC
Q 040203 28 HVVGDSMGWSIPMSGGAGAYVAWAATKNFVVG-DVLTFNFVT-N-------EHDVLRVPKA----------------SYD 82 (202)
Q Consensus 28 ~~VGg~~GW~~~~~~~~~~Y~~WAs~~tF~vG-D~LvF~y~~-~-------~H~V~~V~~~----------------~Y~ 82 (202)
..|+..+.+.+.+ +..+++.| |.+.|.+.+ + .||++..+.. +|.
T Consensus 5 v~i~~~d~m~F~p-----------~~i~V~~G~~~vtv~~~N~g~~~~~~m~H~~vi~~~~~~~~~~~~~m~~~~~~~~v 73 (129)
T 1cuo_A 5 TTVTSGDTMTYST-----------RSISVPASCAEFTVNFEHKGHMPKTGMGHNWVLAKSADVGDVAKEGAHAGADNNFV 73 (129)
T ss_dssp EEEEECSSSCCSC-----------SEEEEETTCSEEEEEEEECSSSCHHHHCBCCEEEEGGGHHHHHHHHHTTCGGGTTS
T ss_pred EEEEeCCCceEcc-----------CeEEEcCCCeEEEEEEEECCCCcccccccceEEecCcchhhhHHHhhhcccccccc
Confidence 4455445677663 25688999 987777754 3 3999887543 232
Q ss_pred CCCCCCCC--CCCccCCC-cEEEe--C---CCCcEEEEcCCCCCCCCCCeEEEEec
Q 040203 83 GCTSSNPI--GNPITTGP-TNITL--D---SAGEHYYICTFGWHCQAGQKLAITVS 130 (202)
Q Consensus 83 ~C~~s~~~--~~~~s~G~-~~v~L--~---~~G~~YFiC~v~~HC~~GmKl~I~V~ 130 (202)
.=+..+.+ ......|. ..+++ . ++|.|+|+|++++|=+ |||-.|.|.
T Consensus 74 ~~~~~~~~~~t~~l~pGet~svtf~~~~~~~~G~Y~f~C~~pgH~~-~M~G~i~V~ 128 (129)
T 1cuo_A 74 TPGDKRVIAFTPIIGGGEKTSVKFKVSALSKDEAYTYFCSYPGHFS-MMRGTLKLE 128 (129)
T ss_dssp CTTCTTCSEECCCBCTTCEEEEEEEGGGCCTTSCEEEECCSTTCTT-TSEEEEEEE
T ss_pred ccccccceeeeeEECCCCEEEEEEeccccCCCceEEEEeCCCCchH-cCEEEEEEe
Confidence 11111111 01233444 34444 3 8999999999999999 899999986
No 29
>1id2_A Amicyanin; beta barrel, type-1 blue copper protein, electron transfer protein, electron transport; 2.15A {Paracoccus versutus} SCOP: b.6.1.1
Probab=97.85 E-value=3e-05 Score=57.50 Aligned_cols=70 Identities=19% Similarity=0.146 Sum_probs=47.5
Q ss_pred CCceEeCCEEEEeecCC-CceEEEecccCCCCCCCCCCCCCCccCCC-cEEEeCCCCcEEEEcCCCCCCCCCCeEEEEec
Q 040203 53 TKNFVVGDVLTFNFVTN-EHDVLRVPKASYDGCTSSNPIGNPITTGP-TNITLDSAGEHYYICTFGWHCQAGQKLAITVS 130 (202)
Q Consensus 53 ~~tF~vGD~LvF~y~~~-~H~V~~V~~~~Y~~C~~s~~~~~~~s~G~-~~v~L~~~G~~YFiC~v~~HC~~GmKl~I~V~ 130 (202)
..++++||+|.|..... .|+|...+... ..-..... .+..|. ..++++++|.|.|+|.. |. ||+..|.|.
T Consensus 35 ~i~V~~G~tV~~~N~d~~~H~v~~~~~~~-~~~~~~s~---~l~~g~~~~~tf~~~G~y~~~C~~--H~--~M~G~I~V~ 106 (106)
T 1id2_A 35 EVTIKAGETVYWVNGEVMPHNVAFKKGIV-GEDAFRGE---MMTKDQAYAITFNEAGSYDYFCTP--HP--FMRGKVIVE 106 (106)
T ss_dssp EEEECTTCEEEEEECSSSCBCCEECTTTS-SSSCEECC---CBCTTEEEEEEECSCEEEEEECSS--CT--TCEEEEEEC
T ss_pred EEEECCCCEEEEEECCCCcEEEEEeCCCC-Cccccccc---ccCCCCEEEEEeCCCEEEEEEeCC--CC--CCEEEEEEC
Confidence 56899999999986543 69997654220 00000111 122343 57888999999999997 87 999999884
No 30
>2ov0_A Amicyanin; beta-sandwich, electron transport; 0.75A {Paracoccus denitrificans} SCOP: b.6.1.1 PDB: 1aaj_A 1aan_A 1aac_A 1mg2_C* 1mg3_C* 1t5k_A 2gc4_C* 2gc7_C* 2j55_A* 2j56_A* 2j57_A* 2mta_A* 1bxa_A 2rac_A 3l45_A 3ie9_A 3iea_A 2idq_A 2ids_A 1sf3_A ...
Probab=97.81 E-value=2.5e-05 Score=57.64 Aligned_cols=66 Identities=24% Similarity=0.252 Sum_probs=46.7
Q ss_pred CCceEeCCEEEEeecCC-CceEEEecccC----CCCCCCCCCCCCCccCC-CcEEEeCCCCcEEEEcCCCCCCCCCCeEE
Q 040203 53 TKNFVVGDVLTFNFVTN-EHDVLRVPKAS----YDGCTSSNPIGNPITTG-PTNITLDSAGEHYYICTFGWHCQAGQKLA 126 (202)
Q Consensus 53 ~~tF~vGD~LvF~y~~~-~H~V~~V~~~~----Y~~C~~s~~~~~~~s~G-~~~v~L~~~G~~YFiC~v~~HC~~GmKl~ 126 (202)
..++++||+|.|..... .|+|......+ |+.+ ....| ...++++++|.|+|+|.. |. ||+-.
T Consensus 34 ~i~v~~Gd~V~~~N~d~~~H~v~~~~~~~g~~~~~~~--------~~~pG~~~~~tf~~~G~y~y~C~~--H~--gM~G~ 101 (105)
T 2ov0_A 34 ELHVKVGDTVTWINREAMPHNVHFVAGVLGEAALKGP--------MMKKEQAYSLTFTEAGTYDYHCTP--HP--FMRGK 101 (105)
T ss_dssp EEEECTTCEEEEEECSSSCBCCEECTTTSSSSCEECC--------CBCTTEEEEEEECSCEEEEEECSS--CT--TCEEE
T ss_pred EEEECCCCEEEEEECCCCCEEEEEcCCCCCccccccc--------ccCCCCEEEEEeCCCEEEEEEeCC--CC--CCEEE
Confidence 56889999999986544 79998653210 2211 12233 357888999999999997 54 99999
Q ss_pred EEec
Q 040203 127 ITVS 130 (202)
Q Consensus 127 I~V~ 130 (202)
|.|.
T Consensus 102 i~V~ 105 (105)
T 2ov0_A 102 VVVE 105 (105)
T ss_dssp EEEC
T ss_pred EEEC
Confidence 9884
No 31
>1iko_P Ephrin-B2; greek KEY, glycosylation, signaling protein; HET: NAG MAN; 1.92A {Mus musculus} SCOP: b.6.1.5
Probab=97.79 E-value=4.2e-06 Score=68.96 Aligned_cols=81 Identities=22% Similarity=0.254 Sum_probs=53.3
Q ss_pred ceEeCCEEEEe---ecC------CCceEEEecccCCCCCCCCCCCCCCc--c--CCCcEEEeC-------------CCC-
Q 040203 55 NFVVGDVLTFN---FVT------NEHDVLRVPKASYDGCTSSNPIGNPI--T--TGPTNITLD-------------SAG- 107 (202)
Q Consensus 55 tF~vGD~LvF~---y~~------~~H~V~~V~~~~Y~~C~~s~~~~~~~--s--~G~~~v~L~-------------~~G- 107 (202)
.+++||.|-|- |.. ..+.|++|++++|+.|+.......++ + .+...+++. ++|
T Consensus 25 ~v~igD~LdIiCP~~~~~~~~~~E~~~LY~Vs~~~y~~C~~~~~~~~l~~C~~P~~~~kftikFq~fsP~p~GlEF~pg~ 104 (178)
T 1iko_P 25 YPQIGDKLDIICPKVDSKTVGQYEYYKVYMVDKDQADRCTIKKENTPLLNCARPDQDVKFTIKFQEFSPNLWGLEFQKNK 104 (178)
T ss_dssp CCCTTCEEEEECCCCCSSSCSCCCBEEEEEECHHHHHHTBCCTTCCCSEEECCTTSCCEEEEECCSSCSSTTCCCCCTTE
T ss_pred EecCCCEEEEECCCCCCCCCCCceEEEEEEECHHHhhhcccCCCCcEEEEecCCCCCEEEEEEEEecCCCCCcccccCCC
Confidence 44679999885 432 23789999999999998863210122 2 222333321 367
Q ss_pred cEEEEcCCC-----------CCCCC-CCeEEEEecCCCCC
Q 040203 108 EHYYICTFG-----------WHCQA-GQKLAITVSATPGS 135 (202)
Q Consensus 108 ~~YFiC~v~-----------~HC~~-GmKl~I~V~~~~~~ 135 (202)
.|||||+-. ++|.. +|||.|.|...+..
T Consensus 105 ~YY~IstS~G~~~gl~~~~gG~C~t~~Mkl~ikV~~~~~~ 144 (178)
T 1iko_P 105 DYYIISTSNGSLEGLDNQEGGVCQTRAMKILMKVGQDASS 144 (178)
T ss_dssp EEEEECCCCBSGGGTTCCBSHHHHHSCCEEEEEETCC---
T ss_pred ceEEEecCCcccccccccCCCccccceeEEEEEeecCCCC
Confidence 799999853 78996 89999999875443
No 32
>2iaa_C Azurin; quinoprotein, tryptophan tryptophylquinone, cupredoxin, electron transfer, oxidoreductase/electron transport comple; HET: TRQ; 1.95A {Alcaligenes faecalis} PDB: 2h47_C* 2h3x_C*
Probab=97.76 E-value=0.00021 Score=55.43 Aligned_cols=91 Identities=19% Similarity=0.252 Sum_probs=54.8
Q ss_pred EEecCCCCCCCCCCCCCcchhhhccCCce-EeCCEEEEeecC-C-------CceEEEeccc----------------CCC
Q 040203 28 HVVGDSMGWSIPMSGGAGAYVAWAATKNF-VVGDVLTFNFVT-N-------EHDVLRVPKA----------------SYD 82 (202)
Q Consensus 28 ~~VGg~~GW~~~~~~~~~~Y~~WAs~~tF-~vGD~LvF~y~~-~-------~H~V~~V~~~----------------~Y~ 82 (202)
..|...+++.+.+. ..++ +.||++.|.|.+ + .||++..+.. +|.
T Consensus 4 v~v~~~d~m~F~p~-----------~i~V~k~G~~vtv~~~N~g~~p~~~m~Hn~vi~~~~~~~~~~~~~m~~~~~~~~~ 72 (128)
T 2iaa_C 4 VSIEGNDSMQFNTK-----------SIVVDKTCKEFTINLKHTGKLPKAAMGHNVVVSKKSDESAVATDGMKAGLNNDYV 72 (128)
T ss_dssp EEEEECTTSCBSCS-----------EEEECTTCSEEEEEEEECSCSCHHHHCBCCEEEETTHHHHHHHHHHHHCGGGTTS
T ss_pred EEEEeCCCceEecC-----------EEEEecCCcEEEEEEEECCCCcccCCCceEEEccccchhhHHHhhhhcccccccc
Confidence 34554556777631 2344 459987777754 3 3999877532 232
Q ss_pred CCCCCCCC--CCCccCCC-cEEEeC----CCC-cEEEEcCCCCCCCCCCeEEEEec
Q 040203 83 GCTSSNPI--GNPITTGP-TNITLD----SAG-EHYYICTFGWHCQAGQKLAITVS 130 (202)
Q Consensus 83 ~C~~s~~~--~~~~s~G~-~~v~L~----~~G-~~YFiC~v~~HC~~GmKl~I~V~ 130 (202)
.=+-.+.+ ......|. ..++++ ++| .|.|+|++++|=+ |||-.|+|.
T Consensus 73 ~~~~~~~~~~t~~l~pGes~~vtf~~~~l~~G~~Y~f~C~~PgH~~-gM~G~i~V~ 127 (128)
T 2iaa_C 73 KAGDERVIAHTSVIGGGETDSVTFDVSKLKEGEDYAFFCSFPGHWS-IMKGTIELG 127 (128)
T ss_dssp CTTCTTEEEECCCBCTTCEEEEEEESSCCCTTCCEEEECCSTTCTT-TSEEEEEEC
T ss_pred ccccchhhccceeeCCCCEEEEEEeccccCCCceEEEEECCCChhH-CCEEEEEEe
Confidence 21111100 01234444 345554 688 4999999999999 999999986
No 33
>2ccw_A Azurin II, AZN-2; electron transport (cuproprotein), alcaligenes xylosoxidans, electron transfer, cupredoxin, electron transport; 1.13A {Alcaligenes xylosoxydans} SCOP: b.6.1.1 PDB: 1dz0_A 1dyz_A 1aiz_A 1azb_A 1azc_A 1uri_A 2aza_A 1a4a_A 1a4b_A 1a4c_A
Probab=97.74 E-value=0.00017 Score=55.95 Aligned_cols=92 Identities=18% Similarity=0.245 Sum_probs=54.3
Q ss_pred EEEecCCCCCCCCCCCCCcchhhhccCCce-EeCCEEEEeecC-C-------CceEEEeccc----------------CC
Q 040203 27 VHVVGDSMGWSIPMSGGAGAYVAWAATKNF-VVGDVLTFNFVT-N-------EHDVLRVPKA----------------SY 81 (202)
Q Consensus 27 ~~~VGg~~GW~~~~~~~~~~Y~~WAs~~tF-~vGD~LvF~y~~-~-------~H~V~~V~~~----------------~Y 81 (202)
+..|+..+++.+.+. ..++ +.||.+.|.+.+ + .||++..+.. +|
T Consensus 4 ~v~v~~~d~m~F~p~-----------~i~V~k~G~~vtv~~~N~g~~p~~~m~H~~vi~~~~~~~~~~~~~~~~~~~~~~ 72 (129)
T 2ccw_A 4 EATVESNDAMQYNVK-----------EIVVDKSCKQFTMHLKHVGKMAKVAMGHNLVLTKDADKQAVATDGMGAGLAQDY 72 (129)
T ss_dssp EEEEEECTTSCBSCS-----------EEEECTTCSEEEEEEEECSCCCHHHHCBCCEEEEGGGHHHHHHHHHHHCGGGTT
T ss_pred EEEEEeCCCccEecc-----------eEEEecCCCEEEEEEEECCCcccccCcceEEEcCccchhhhHHHhhhhcccccc
Confidence 345555556776621 2344 449987777754 2 3999887543 23
Q ss_pred CCCCCCCCC--CCCccCCC-cEEEe--C--CCCc-EEEEcCCCCCCCCCCeEEEEec
Q 040203 82 DGCTSSNPI--GNPITTGP-TNITL--D--SAGE-HYYICTFGWHCQAGQKLAITVS 130 (202)
Q Consensus 82 ~~C~~s~~~--~~~~s~G~-~~v~L--~--~~G~-~YFiC~v~~HC~~GmKl~I~V~ 130 (202)
..=+-.+.+ ......|. ..+++ . ++|. |+|+|++++|=+ |||-.|+|.
T Consensus 73 ~~~~~~~~~~~t~~l~pGet~svtf~~~~l~~G~~Y~f~C~~pgH~~-gM~G~i~V~ 128 (129)
T 2ccw_A 73 VKAGDTRVIAHTKVIGGGESDSVTFDVSKIAAGENYAYFCSFPGHWA-MMKGTLKLG 128 (129)
T ss_dssp SCTTCTTEEEECCCBCTTCEEEEEEEGGGSCTTCCEEEECCSTTGGG-TSEEEEEEC
T ss_pred cccccccceeeeeEECCCCEEEEEEeccccCCCceEEEEeCCCChhH-cCEEEEEEe
Confidence 221111100 01233444 34544 4 5765 999999999998 899999986
No 34
>1nwp_A Azurin; electron transport, cupredoxin, electron transfer; 1.60A {Pseudomonas putida} SCOP: b.6.1.1 PDB: 1nwo_A 1joi_A
Probab=97.70 E-value=0.0001 Score=57.17 Aligned_cols=92 Identities=21% Similarity=0.262 Sum_probs=55.8
Q ss_pred EEEecCCCCCCCCCCCCCcchhhhccCCce-EeCCEEEEeecCC--------CceEEEecccC----------------C
Q 040203 27 VHVVGDSMGWSIPMSGGAGAYVAWAATKNF-VVGDVLTFNFVTN--------EHDVLRVPKAS----------------Y 81 (202)
Q Consensus 27 ~~~VGg~~GW~~~~~~~~~~Y~~WAs~~tF-~vGD~LvF~y~~~--------~H~V~~V~~~~----------------Y 81 (202)
+..|+..+++.+.+ +..++ +.||.+.|.|.+. .||++..+..+ |
T Consensus 4 ~v~v~~~d~m~F~p-----------~~i~V~k~G~~vtv~~~N~g~~p~~~m~H~~vi~~~~~~~~~~~~~m~~~~~~~~ 72 (128)
T 1nwp_A 4 KVTVDSTDQMSFNT-----------KDIAIDKSCKTFTVELTHSGSLPKNVMGHNLVISKEADMQPIATDGLSAGIDKQY 72 (128)
T ss_dssp EEEEEECTTSCBSC-----------SEEEECTTCSEEEEEEEECSSCCHHHHCBCCEEEEGGGHHHHHHHHTTTCGGGTT
T ss_pred EEEEEeCCCccEec-----------CEEEEecCCCEEEEEEEECCCCcccCCCceEEEccccchhhHHHHHhhccccccc
Confidence 34555556777763 24466 6799887777542 29998865321 2
Q ss_pred CCCCCCCCCC--CCccCCC-cEEEeC----CCCc-EEEEcCCCCCCCCCCeEEEEec
Q 040203 82 DGCTSSNPIG--NPITTGP-TNITLD----SAGE-HYYICTFGWHCQAGQKLAITVS 130 (202)
Q Consensus 82 ~~C~~s~~~~--~~~s~G~-~~v~L~----~~G~-~YFiC~v~~HC~~GmKl~I~V~ 130 (202)
..=+..+.+. .....|. ..++++ ++|. |.|+|++++|=+ |||-.|+|.
T Consensus 73 ~~~~~~~~~~~t~~l~pGet~svtf~~~~l~~G~~Y~f~C~~PgH~~-gM~G~i~V~ 128 (128)
T 1nwp_A 73 LKDGDARVIAHTKVIGAGEKDSVTFDVSKLAAGEKYGFFCSFPGHIS-MMKGTVTLK 128 (128)
T ss_dssp SCTTCTTEEEECCCBCTTCEEEEEEEGGGSCTTSCEEEECCSTTCGG-GSEEEEEEC
T ss_pred cccccchhheeeeeeCCCCEEEEEEeccccCCCceEEEEECCCChhH-CCEEEEEEC
Confidence 1111111000 1234444 355554 5776 999999999999 999999884
No 35
>2vsm_B Ephrin-B2; developmental protein, henipavirus, neurogenesis, glycoprotein, paramyxovirus, envelope protein, cell surface receptor, hendra, virion; HET: NAG; 1.80A {Homo sapiens} PDB: 2wo2_B* 2i85_A 3gxu_B 2vsk_B 2hle_B 1kgy_E
Probab=97.03 E-value=0.00035 Score=55.39 Aligned_cols=77 Identities=23% Similarity=0.276 Sum_probs=49.7
Q ss_pred ceEeCCEEEEe---ecCC------CceEEEecccCCCCCCCCCCCCCCcc----CCCcEEEeC-------------CCC-
Q 040203 55 NFVVGDVLTFN---FVTN------EHDVLRVPKASYDGCTSSNPIGNPIT----TGPTNITLD-------------SAG- 107 (202)
Q Consensus 55 tF~vGD~LvF~---y~~~------~H~V~~V~~~~Y~~C~~s~~~~~~~s----~G~~~v~L~-------------~~G- 107 (202)
.+++||.|-|- |..+ ...+++|++++|+.|+........+. .+...+++. ++|
T Consensus 24 ~v~i~D~ldIiCP~~~~~~~~~~E~~~lY~Vs~~~y~~C~~~~~~~~~~~C~~P~~~~kft~kFq~fsP~~~G~eF~~g~ 103 (140)
T 2vsm_B 24 YPQIGDKLDIICPKVDSKTVGQYEYYKVYMVDKDQADRCTIKKENTPLLNCAKPDQDIKFTIKFQEFSPNLWGLEFQKNK 103 (140)
T ss_dssp CCCTTCEEEEEECCCC---CCCCCBEEEEEECHHHHHHTBCCTTCCCSEEECCTTSCEEEEEESSSCCSCSSCCCCCTTE
T ss_pred EecCCCEEEEECCCCCCCCCCCceEEEEEEECHHHhhhcccCCCCcEEEEecCCCCCEEEEEEEEecCCCCCcccccCCC
Confidence 45679999886 3321 46889999999999988632201221 233333221 467
Q ss_pred cEEEEcCC-----------CCCCCC-CCeEEEEecC
Q 040203 108 EHYYICTF-----------GWHCQA-GQKLAITVSA 131 (202)
Q Consensus 108 ~~YFiC~v-----------~~HC~~-GmKl~I~V~~ 131 (202)
.||||++- +|-|.. .|||.|.|..
T Consensus 104 ~YY~Ists~g~~~gl~~~~gG~C~t~~mkl~i~V~~ 139 (140)
T 2vsm_B 104 DYYIISTSNGSLEGLDNQEGGVCQTRAMKILMKVGH 139 (140)
T ss_dssp EEEEECCCCBSGGGTTCCBSHHHHHSCCEEEEEETC
T ss_pred ceEEEecCCCCccccccccCCccccceEEEEEEecC
Confidence 68889873 357884 8999999964
No 36
>2x11_B Ephrin-A5; receptor-signaling protein complex, developmental protein, signaling platform, kinase, transferase, neurogenesis, receptor, cataract; 4.83A {Homo sapiens}
Probab=96.97 E-value=0.00076 Score=55.42 Aligned_cols=78 Identities=21% Similarity=0.307 Sum_probs=50.6
Q ss_pred CceEeCCEEEEe---ecC-------CCceEEEecccCCCCCCCCCCCCCCc-------cCCCcEEEe-------------
Q 040203 54 KNFVVGDVLTFN---FVT-------NEHDVLRVPKASYDGCTSSNPIGNPI-------TTGPTNITL------------- 103 (202)
Q Consensus 54 ~tF~vGD~LvF~---y~~-------~~H~V~~V~~~~Y~~C~~s~~~~~~~-------s~G~~~v~L------------- 103 (202)
..+++||.|-+- |+. ....+++|++++|++|+........+ ..|+.+|++
T Consensus 52 i~V~i~D~LDIiCP~y~~~~~~~~~E~y~LY~Vs~e~y~~C~~~~~~~~~~~C~~P~~p~~~~kftikFQ~FSP~p~G~E 131 (177)
T 2x11_B 52 IDVCINDYLDVFCPHYEDSVPEDKTERYVLYMVNFDGYSACDHTSKGFKRWECNRPHSPNGPLKFSEKFQLFTPFSLGFE 131 (177)
T ss_dssp EEECTTCEEEEECCCCCSSSCSSSCCCEEEEEECHHHHHHTCCTTTEEEEEEECCTTCSSSSCEEEEECCSSCSSTTCCC
T ss_pred EEecCCCEEEEECCCCCCCCCCCCceEEEEEEECHHHhccccCCCCCcEEEEeCCCCCCCCCeEEEEEEEEcCCCCCCcc
Confidence 468899999875 442 35678899999999998754220111 113433331
Q ss_pred CCCC-cEEEEcCC-----CCCCCCCCeEEEEecCCCC
Q 040203 104 DSAG-EHYYICTF-----GWHCQAGQKLAITVSATPG 134 (202)
Q Consensus 104 ~~~G-~~YFiC~v-----~~HC~~GmKl~I~V~~~~~ 134 (202)
=++| .||||++- ++-| |||.|.|.....
T Consensus 132 F~pG~~YYyISTS~~~~~g~~C---lrLkV~V~p~~~ 165 (177)
T 2x11_B 132 FRPGREYFYISSAIPDNGRRSC---LKLKVFVRPTNS 165 (177)
T ss_dssp CCTTEEEEEEEEESSCCCSSSC---CEEEEEECCTTT
T ss_pred ccCCCeEEEEecCCCCCCCCcc---eEEEEEEEcCCC
Confidence 1467 68899753 2346 999999987544
No 37
>1shx_A Ephrin-A5; ephrin signaling, hormone-growth factor complex; HET: NAG; 2.10A {Mus musculus} SCOP: b.6.1.5 PDB: 1shw_A* 3mx0_B*
Probab=96.84 E-value=0.0022 Score=50.70 Aligned_cols=77 Identities=21% Similarity=0.311 Sum_probs=49.6
Q ss_pred CceEeCCEEEEe---ecC-------CCceEEEecccCCCCCCCCCCCCCCc--c-----CCCcEEEe-------------
Q 040203 54 KNFVVGDVLTFN---FVT-------NEHDVLRVPKASYDGCTSSNPIGNPI--T-----TGPTNITL------------- 103 (202)
Q Consensus 54 ~tF~vGD~LvF~---y~~-------~~H~V~~V~~~~Y~~C~~s~~~~~~~--s-----~G~~~v~L------------- 103 (202)
..+++||.|-+- |.. ....|++|++++|++|+........+ + .++.+|++
T Consensus 23 i~V~i~D~lDIiCP~~~~~~~~~~~E~~~lY~Vs~~~y~~C~~~~~~~~~~~C~~P~~p~~~~kftikFq~fsP~p~G~E 102 (138)
T 1shx_A 23 IDVCINDYLDVFCPHYEDSVPEDKTERYVLYMVNFDGYSACDHTSKGFKRWECNRPHSPNGPLKFSEKFQLFTPFSLGFE 102 (138)
T ss_dssp EEECTTCEEEEECCCCCTTCCSTTCCCEEEEEECHHHHHTTCSSSSEEEEEEECCTTCTTSSCEEEEECCSCCSSTTCCC
T ss_pred EEecCCCEEEEECCCCCCCCCCCCceEEEEEEECHHHhccccCCCCCCEEEEeCCCCCCCCCeEEEEEEEEcCCCCCcee
Confidence 467899999875 442 24678899999999998754220111 1 13333331
Q ss_pred CCCC-cEEEEcCC-----CCCCCCCCeEEEEecCCC
Q 040203 104 DSAG-EHYYICTF-----GWHCQAGQKLAITVSATP 133 (202)
Q Consensus 104 ~~~G-~~YFiC~v-----~~HC~~GmKl~I~V~~~~ 133 (202)
=++| .||||++- ++-| |||.|.|....
T Consensus 103 F~pG~~YY~ISts~~~~~g~~C---lrL~V~V~p~~ 135 (138)
T 1shx_A 103 FRPGREYFYISSAIPDNGRRSC---LKLKVFVRPTN 135 (138)
T ss_dssp CCTTEEEEEEEEESSCCSCSCC---CEEEEEECCTT
T ss_pred ecCCCeEEEEEcCCCCCCCCce---eEEEEEEEccc
Confidence 1367 68899753 3446 99999998743
No 38
>3czu_B Ephrin-A1; ATP-binding, kinase, nucleotide-binding, receptor, transfera phosphorylation, transmembrane, tyrosine-protein kinase, glycoprotein; HET: NAG MAN; 2.65A {Homo sapiens} PDB: 3mbw_B*
Probab=96.83 E-value=0.0015 Score=53.92 Aligned_cols=81 Identities=22% Similarity=0.347 Sum_probs=49.3
Q ss_pred CCceEeCCEEEEe---ecC--------CCceEEEecccCCCCCCCCC-CCCCCc------c-CCCcEEEe----------
Q 040203 53 TKNFVVGDVLTFN---FVT--------NEHDVLRVPKASYDGCTSSN-PIGNPI------T-TGPTNITL---------- 103 (202)
Q Consensus 53 ~~tF~vGD~LvF~---y~~--------~~H~V~~V~~~~Y~~C~~s~-~~~~~~------s-~G~~~v~L---------- 103 (202)
...+++||.|-+- |.. ....|++|++++|++|+... .. .++ . .|+.+|++
T Consensus 49 ~i~V~i~D~LDIiCP~y~~~~~~~~~~E~y~LY~Vs~e~y~sC~~~~~~~-~~~~C~~P~~~~~p~kftikFQ~FSP~p~ 127 (182)
T 3czu_B 49 TIHVQLNDYVDIICPHYEDHSVADAAMEQYILYLVEHEEYQLCQPQSKDQ-VRWQCNRPSAKHGPEKLSEKFQRFTPFTL 127 (182)
T ss_dssp EEEECTTCEEEEECCCCC--CCCGGGSCCEEEEEECHHHHHHTCCCCGGG-EEEEECCTTCTTSCCEEEEECCSCCSCTT
T ss_pred eEEeccCCEEEEECCCCCCCCCCCCCceEEEEEEECHHHhhhccCCCCCc-EEEEeCCCCCCCCCcEEEEEEEEcCCCCC
Confidence 3577999999875 432 23678899999999998764 21 111 1 23332321
Q ss_pred ---CCCC-cEEEEcC----CCCCCCCCCeEEEEecCCCCCCC
Q 040203 104 ---DSAG-EHYYICT----FGWHCQAGQKLAITVSATPGSSP 137 (202)
Q Consensus 104 ---~~~G-~~YFiC~----v~~HC~~GmKl~I~V~~~~~~sp 137 (202)
=++| .||||+. .++.| |||.|.|......+|
T Consensus 128 GlEF~pG~dYY~ISts~~~~gg~C---mrL~v~V~~k~~~~P 166 (182)
T 3czu_B 128 GKEFKEGHSYYYISKPIHQHEDRC---LRLKVTVSGKITHSP 166 (182)
T ss_dssp SCCCCTTCEEEEEEEESSSCCCSC---CEEEEEECC------
T ss_pred CeeEeCCCeEEEEEccCCCCCCcc---eEEEEEEecCCCCCC
Confidence 1467 6889986 35666 899999987655444
No 39
>1iby_A Nitrosocyanin; RED copper, cupredoxin, beta hairpin, metal binding protein; 1.65A {Nitrosomonas europaea} SCOP: b.6.1.4 PDB: 1ibz_A 1ic0_A
Probab=96.74 E-value=0.0018 Score=47.72 Aligned_cols=66 Identities=18% Similarity=0.192 Sum_probs=44.0
Q ss_pred CCceEeCCEEEEeecCC---CceEEEecccCCCCCCCCCCCCCCccCCC-cEEEe--CCCCcEEEEcCCCCCCCC-CCeE
Q 040203 53 TKNFVVGDVLTFNFVTN---EHDVLRVPKASYDGCTSSNPIGNPITTGP-TNITL--DSAGEHYYICTFGWHCQA-GQKL 125 (202)
Q Consensus 53 ~~tF~vGD~LvF~y~~~---~H~V~~V~~~~Y~~C~~s~~~~~~~s~G~-~~v~L--~~~G~~YFiC~v~~HC~~-GmKl 125 (202)
..+++.||.+.|.+.+. .|++..-+ ... . .....|. ..+.+ +++|.|+|.|.. ||.. +|+.
T Consensus 39 ~i~v~~G~~V~~~~~n~d~~~H~~~i~~-~~~--------~-~~i~pG~~~~~~f~~~~~G~y~~~C~~--~~~~~~M~g 106 (112)
T 1iby_A 39 TLVVKKGDAVKVVVENKSPISEGFSIDA-FGV--------Q-EVIKAGETKTISFTADKAGAFTIWCQL--HPKNIHLPG 106 (112)
T ss_dssp EEEEETTCEEEEEEEECSSSCEEEEEGG-GTE--------E-EEECTTCEEEEEEECCSCEEEEEBCSS--SCTTTBCCE
T ss_pred EEEEeCCCEEEEEEEECCCCeEEEEEcC-CCc--------e-eEeCCCCEEEEEEECCCCEEEEEECCC--CCchHHCEE
Confidence 46889999999987542 58875432 110 1 1122343 34444 899999999996 7753 3999
Q ss_pred EEEec
Q 040203 126 AITVS 130 (202)
Q Consensus 126 ~I~V~ 130 (202)
.|.|.
T Consensus 107 ~i~V~ 111 (112)
T 1iby_A 107 TLNVV 111 (112)
T ss_dssp EEEEE
T ss_pred EEEEe
Confidence 99886
No 40
>2cua_A Protein (CUA); CUA center, electron transport; 1.60A {Thermus thermophilus} SCOP: b.6.1.2 PDB: 2fwl_B*
Probab=96.34 E-value=0.0062 Score=47.32 Aligned_cols=66 Identities=18% Similarity=0.248 Sum_probs=45.4
Q ss_pred CCceEeCCEEEEeecCC--CceEEEecccCCCCCCCCCCCCCCccCC---CcEEEeCCCCcEEEEcCCCCCCC---CCCe
Q 040203 53 TKNFVVGDVLTFNFVTN--EHDVLRVPKASYDGCTSSNPIGNPITTG---PTNITLDSAGEHYYICTFGWHCQ---AGQK 124 (202)
Q Consensus 53 ~~tF~vGD~LvF~y~~~--~H~V~~V~~~~Y~~C~~s~~~~~~~s~G---~~~v~L~~~G~~YFiC~v~~HC~---~GmK 124 (202)
...+.+||.+.|...+. .|++..-+ ...+ .....| ...++++++|.|+|.|.. +|. .+|+
T Consensus 61 ~l~Vp~G~~V~~~vts~DV~Hsf~ip~-~~~k---------~d~~PG~~~~~~~~~~~~G~y~~~C~e--~CG~~H~~M~ 128 (135)
T 2cua_A 61 PIEVPQGAEIVFKITSPDVIHGFHVEG-TNIN---------VEVLPGEVSTVRYTFKRPGEYRIICNQ--YCGLGHQNMF 128 (135)
T ss_dssp SEEEETTSEEEEEEEBSSSCEEEEETT-SSCE---------EEECBTBCEEEEEECCSCEEEEEECCS--CCSTTSTTCE
T ss_pred EEEEcCCCEEEEEEEeCCccceEEecC-CCce---------eEeCCCCcEEEEEEcCCCEEEEEECcc--cCCCCcCCCE
Confidence 56899999999998653 47765321 1110 111223 347889999999999986 455 6899
Q ss_pred EEEEec
Q 040203 125 LAITVS 130 (202)
Q Consensus 125 l~I~V~ 130 (202)
..|.|.
T Consensus 129 g~v~V~ 134 (135)
T 2cua_A 129 GTIVVK 134 (135)
T ss_dssp EEEEEE
T ss_pred EEEEEE
Confidence 999986
No 41
>3d12_B Ephrin-B3; beta propeller, protein-receptor complex, envelope protein, glycoprotein, hemagglutinin, hydrolase, membrane, signal-AN transmembrane; HET: NAG BMA MAN BGC LXZ NGA GL0 GLC LXB NGZ GXL; 3.00A {Mus musculus}
Probab=96.29 E-value=0.0024 Score=50.66 Aligned_cols=75 Identities=23% Similarity=0.227 Sum_probs=50.1
Q ss_pred CceEeCCEEEEe---ecC---------CCceEEEecccCCCCCCCCC-CCCCCcc----CCCcEEE--------------
Q 040203 54 KNFVVGDVLTFN---FVT---------NEHDVLRVPKASYDGCTSSN-PIGNPIT----TGPTNIT-------------- 102 (202)
Q Consensus 54 ~tF~vGD~LvF~---y~~---------~~H~V~~V~~~~Y~~C~~s~-~~~~~~s----~G~~~v~-------------- 102 (202)
..+++||.|-+- |.. ....+++|++++|++|+... +. .++. .++..|+
T Consensus 22 i~V~i~D~ldIiCP~~~~~~~~~~~~~E~~~lY~Vs~~~y~~C~~~~~~~-~~~~C~~P~~~~kft~kFq~fsP~p~G~E 100 (141)
T 3d12_B 22 LYPQIGDRLDLLCPRARPPGPHSSPSYEFYKLYLVEGAQGRRCEAPPAPN-LLLTCDRPDLDLRFTIKFQEYSPNLWGHE 100 (141)
T ss_dssp ECCCTTCEEEEEECCCSSCCTTCCSSCCCCEEEEECSHHHHTTBCCSSCE-EEEECCCSSSCEEEEEESSSCCSCCSCCC
T ss_pred EEecCCCEEEEECCCCCCCCCCCCCCceEEEEEEECHHHhccccCCCCCe-EEEEeCCCCCCeEEEEEEEEcCCCCCcee
Confidence 367889999875 432 34678999999999998862 22 1111 1222222
Q ss_pred eCCCC-cEEEEcCC-----------CCCCCC-CCeEEEEec
Q 040203 103 LDSAG-EHYYICTF-----------GWHCQA-GQKLAITVS 130 (202)
Q Consensus 103 L~~~G-~~YFiC~v-----------~~HC~~-GmKl~I~V~ 130 (202)
+ ++| .||||++- +|-|.. .|||.|.|.
T Consensus 101 F-~pG~~YY~ISts~G~~~gl~~~~gG~C~t~~Mkl~i~V~ 140 (141)
T 3d12_B 101 F-RSHHDYYIIATSDGTREGLESLQGGVCLTRGMKVLLRVG 140 (141)
T ss_dssp C-CTTCEEEEEECSCSSTTTTTCCBCSHHHHTCCEEEEECC
T ss_pred e-eCCCeEEEEecCCCCcccccccCCCccccceEEEEEEec
Confidence 2 466 68899873 467885 899999986
No 42
>3fsa_A Azurin; copper, cupredoxin fold, metal-binding, protein-protein interaction, metal binding protein; 0.98A {Pseudomonas aeruginosa} SCOP: b.6.1.1 PDB: 2xv2_A 2xv0_A 3fs9_A 2fta_A* 2hx7_A 2hx8_A 2hx9_A 2hxa_A 1cc3_A 2ft6_A 2ft7_A 2ft8_A 1azn_A 3n2j_A 2iwe_A 2ghz_A 2gi0_A 1jzg_A* 1azu_A* 1bex_A ...
Probab=96.07 E-value=0.079 Score=41.00 Aligned_cols=72 Identities=21% Similarity=0.290 Sum_probs=42.7
Q ss_pred ceEe-CCEEEEeecC-C-------CceEEEeccc----------------CCCCCCCCCCCC--CCccCCC-cEEEeC--
Q 040203 55 NFVV-GDVLTFNFVT-N-------EHDVLRVPKA----------------SYDGCTSSNPIG--NPITTGP-TNITLD-- 104 (202)
Q Consensus 55 tF~v-GD~LvF~y~~-~-------~H~V~~V~~~----------------~Y~~C~~s~~~~--~~~s~G~-~~v~L~-- 104 (202)
+++. |+++.|.+.+ + .||++..... +|-.=+-.+.+. .....|. ..++++
T Consensus 21 ~V~~~Ge~V~~~l~N~G~~p~~~M~Hn~Vl~~~~~~~~~~~~~m~~~~~~~y~~~~d~~via~t~~l~pGes~~vtf~~~ 100 (125)
T 3fsa_A 21 TVDKSCKQFTVNLSHPGNLPKNVMGHNWVLSTAADMQGVVTDGMASGLDKDYLKPDDSRVIAHTKLIGSGEKDSVTFDVS 100 (125)
T ss_dssp EECTTCSEEEEEEECCSSCCHHHHCBCCEEEEHHHHHHHHHHHHHHCGGGTTSCTTCTTCCEECCCBCTTCEEEEEEEGG
T ss_pred EEecCCCEEEEEEEECCcccccccCceEEEcccchHHHHHHHHHhcChhhccCCCCCccceeccceeCCCcEEEEEEeCc
Confidence 4433 9999888764 4 3999987321 232211111110 1234455 345544
Q ss_pred ---CCCcEEEEcCCCCCCCCCCeEEEEec
Q 040203 105 ---SAGEHYYICTFGWHCQAGQKLAITVS 130 (202)
Q Consensus 105 ---~~G~~YFiC~v~~HC~~GmKl~I~V~ 130 (202)
++|.|-|+|+ +|= |||-.|.|.
T Consensus 101 ~l~~~G~y~f~C~--gH~--~M~G~v~V~ 125 (125)
T 3fsa_A 101 KLKEGEQYMFFCA--AHA--AMKGTLTLK 125 (125)
T ss_dssp GC---CCEEEECS--SST--TCEEEEEEC
T ss_pred CcCCCccEEEEcC--CCC--CcEEEEEEC
Confidence 6699999999 887 999999874
No 43
>2dv6_A Nitrite reductase; electron transfer, reduction, denitrification, oxidoreductase; 2.20A {Hyphomicrobium denitrificans}
Probab=95.66 E-value=0.01 Score=53.37 Aligned_cols=74 Identities=24% Similarity=0.305 Sum_probs=51.7
Q ss_pred CCceEeCCEEEEeecCC---CceEEEecccCCCCCCCCCCCCCCccCCC---cEEEeCCCCcEEEEcCCCCCCCCCCeEE
Q 040203 53 TKNFVVGDVLTFNFVTN---EHDVLRVPKASYDGCTSSNPIGNPITTGP---TNITLDSAGEHYYICTFGWHCQAGQKLA 126 (202)
Q Consensus 53 ~~tF~vGD~LvF~y~~~---~H~V~~V~~~~Y~~C~~s~~~~~~~s~G~---~~v~L~~~G~~YFiC~v~~HC~~GmKl~ 126 (202)
..+++.||+|+|++.+. .|++..-.......|-. ..|. ..|+++++|+|||.|.+.+|=..||+..
T Consensus 56 ~i~v~~Gd~v~~~~~N~~~~~h~~~~~g~~~~~~~~i--------~pG~~~~~~f~~~~~Gt~~y~~~~~~h~~~Gm~G~ 127 (447)
T 2dv6_A 56 TLVVHEGETVQVNLVNGEGAQHDVVVDQYAARSAIVN--------GKNASSTFSFVASKVGEFNYYCSIAGHRQAGMEGN 127 (447)
T ss_dssp CEEEETTCEEEEEEECSSSSCBCCEETTTTEECCCBC--------STTBEEEEEEECCSCEEEEEECCSTTHHHHTCEEE
T ss_pred eEEEcCCCEEEEEEEcCCCCceEEEEccCCcccceec--------CCCCeEEEEEEcCCCEEEEEEeCCCChhhCCCEEE
Confidence 56889999999988653 37765322221222321 2232 3666789999999999988988899999
Q ss_pred EEecCCCC
Q 040203 127 ITVSATPG 134 (202)
Q Consensus 127 I~V~~~~~ 134 (202)
|.|.....
T Consensus 128 i~V~~~~~ 135 (447)
T 2dv6_A 128 IQVLPGNR 135 (447)
T ss_dssp EEEESSCC
T ss_pred EEEeCCcc
Confidence 99987543
No 44
>2wo3_B Ephrin-A2; transferase-signaling protein complex, EFN, EPHA4, KINA ephrin, complex, membrane, cell surface receptor, tyrosine- kinase, glycoprotein; HET: NAG; 2.35A {Homo sapiens}
Probab=94.17 E-value=0.073 Score=42.83 Aligned_cols=77 Identities=19% Similarity=0.288 Sum_probs=47.7
Q ss_pred CceEeCCEEEEe---ecC--------CCceEEEecccCCCCCCCCCCCCCCc-------cCCCcEEE--e----------
Q 040203 54 KNFVVGDVLTFN---FVT--------NEHDVLRVPKASYDGCTSSNPIGNPI-------TTGPTNIT--L---------- 103 (202)
Q Consensus 54 ~tF~vGD~LvF~---y~~--------~~H~V~~V~~~~Y~~C~~s~~~~~~~-------s~G~~~v~--L---------- 103 (202)
..+++||.|-+- |.. ....+++|++++|++|+.......++ ..++.+|+ +
T Consensus 32 i~V~i~D~LDIiCP~y~~~~~~~~~~E~y~LY~Vs~~~y~~C~~~~~~~~~~~C~~P~~p~~~~kftikFQ~fSP~p~G~ 111 (157)
T 2wo3_B 32 VEVSINDYLDIYCPHYGAPLPPAERMEHYVLYMVNGEGHASCDHRQRGFKRWECNRPAAPGGPLKFSEKFQLFTPFSLGF 111 (157)
T ss_dssp EEECTTCEEEEECCCCCSSCCCGGGSCCEEEEEECHHHHHHTCCTTSEEEEEEECCTTCTTSSCEEEEECCSSCSSTTSC
T ss_pred EEeccCCEEEEECCCCCCCCCCCCCceEEEEEEECHHHhccccCCCCCCEEEEeCCCCCCCCCeEEEEEEEECCCCCCCe
Confidence 468899999885 431 23458899999999998865220111 11332232 1
Q ss_pred -CCCC-cEEEEcCC-----CCCCCCCCeEEEEecCCC
Q 040203 104 -DSAG-EHYYICTF-----GWHCQAGQKLAITVSATP 133 (202)
Q Consensus 104 -~~~G-~~YFiC~v-----~~HC~~GmKl~I~V~~~~ 133 (202)
=++| .||||+.- ++-| |||.|.|....
T Consensus 112 EF~pG~~YY~ISTS~g~~~gg~C---~rlkV~V~~~~ 145 (157)
T 2wo3_B 112 EFRPGHEYYYISATPPNAVDRPC---LRLKVYVRPTQ 145 (157)
T ss_dssp CCCTTCEEEEEEECTTCSCCTTC---CEEEEEECCCC
T ss_pred eeeCCCeEEEEEecCCCCCCCcc---eeEEEEEEcCC
Confidence 1456 68999963 3456 58888887643
No 45
>3hei_B Ephrin-A1; EPH receptor tyrosine kinase, cell membrane, disulfi glycoprotein, GPI-anchor, lipoprotein, membrane, ATP-bindin kinase; 2.00A {Homo sapiens} SCOP: b.6.1.0
Probab=93.52 E-value=0.11 Score=40.63 Aligned_cols=76 Identities=18% Similarity=0.280 Sum_probs=45.4
Q ss_pred CceEeCCEEEEe---ecC--------CCceEEEecccCCCCCCCCCCCCCCc------c-CCCcEEEe------------
Q 040203 54 KNFVVGDVLTFN---FVT--------NEHDVLRVPKASYDGCTSSNPIGNPI------T-TGPTNITL------------ 103 (202)
Q Consensus 54 ~tF~vGD~LvF~---y~~--------~~H~V~~V~~~~Y~~C~~s~~~~~~~------s-~G~~~v~L------------ 103 (202)
..+++||.|-+- |+. ....+++|++++|++|+.......++ . .|+.++++
T Consensus 22 v~V~i~D~LDIiCP~y~~~~~~~~~~E~y~LY~Vs~~~y~~C~~~~~~~~~~~C~~P~~~~~~~kft~kFQ~FSP~p~G~ 101 (132)
T 3hei_B 22 IHVQLNDYVDIICPHYEDHSVADAAMEQYILYLVEHEEYQLCQPQSKDQVRWQCNRPSAKHGPEKLSEKFQRFTPFTLGK 101 (132)
T ss_dssp EEECTTCEEEEECCCCCTTSSCGGGCCCEEEEEECHHHHHHTCCSCGGGEEEEECCTTCTTSCCEEEEECCSCCSCTTSC
T ss_pred EEeCCCCeEEEECCCCCCCCCCCCCccEEEEEEeCHHHhccccCCCCCcEEEEeCCCCCCCCceEEEEEEEEcCCCCCCe
Confidence 467899999774 432 23678899999999998765210111 1 23433331
Q ss_pred -CCCC-cEEEEcCCCCCCCCC--CeEEEEec
Q 040203 104 -DSAG-EHYYICTFGWHCQAG--QKLAITVS 130 (202)
Q Consensus 104 -~~~G-~~YFiC~v~~HC~~G--mKl~I~V~ 130 (202)
=++| .||||++- .|=..+ +||.|.|.
T Consensus 102 EF~pG~~YY~ISt~-~~~~~~~cl~l~v~v~ 131 (132)
T 3hei_B 102 EFKEGHSYYYISKP-IHQHEDRCLRLKVTVK 131 (132)
T ss_dssp CCCTTCEEEEEEEE-SSCCCCSCCEEEEEEC
T ss_pred eecCCCcEEEEEcc-CCCCCCcceEEEEEEE
Confidence 1357 68888862 221112 68888774
No 46
>3s8f_B Cytochrome C oxidase subunit 2; complex IV, respiratory chain, lipid cubic phase, monoolein, peroxide, electron transport, proton pump; HET: HEM HAS OLC; 1.80A {Thermus thermophilus} PDB: 1ehk_B* 2qpd_B* 3qjq_B* 3qjr_B* 3qju_B* 3qjv_B* 1xme_B* 3s8g_B* 4esl_B* 4ev3_B* 4f05_B* 4fa7_B* 4faa_B* 3qjs_B* 3bvd_B* 2qpe_B* 3qjt_B* 3s3b_B* 3s33_B* 3s39_B* ...
Probab=93.50 E-value=0.11 Score=41.86 Aligned_cols=67 Identities=18% Similarity=0.213 Sum_probs=42.8
Q ss_pred cCCceEeCCEEEEeecCC--CceEEEecccCCCCCCCCCCCCCCccCC---CcEEEeCCCCcEEEEcCCCCCCCC---CC
Q 040203 52 ATKNFVVGDVLTFNFVTN--EHDVLRVPKASYDGCTSSNPIGNPITTG---PTNITLDSAGEHYYICTFGWHCQA---GQ 123 (202)
Q Consensus 52 s~~tF~vGD~LvF~y~~~--~H~V~~V~~~~Y~~C~~s~~~~~~~s~G---~~~v~L~~~G~~YFiC~v~~HC~~---Gm 123 (202)
+...+.+|+.+.|..++. .|+...-+ ... . .....| ...++.+++|.|||.|.. .|.. +|
T Consensus 93 n~l~VP~G~~Vr~~vTS~DViHsf~IP~-lgi--------k-~da~PG~~n~~~~~~~kpG~y~g~Cse--~CG~~Hs~M 160 (168)
T 3s8f_B 93 NPIEVPQGAEIVFKITSPDVIHGFHVEG-TNI--------N-VEVLPGEVSTVRYTFKRPGEYRIICNQ--YCGLGHQNM 160 (168)
T ss_dssp SSEEEETTSEEEEEEECSSSCEEEEETT-SSC--------E-EEECTTBCEEEEEECCSCEEEEEECCS--CCSTTGGGC
T ss_pred CEEEEeCCCeEEEEEecCCceEEEEECC-CCe--------E-EEecCCceeEEEEEeCCCEEEEEECCc--CCCCCcCCC
Confidence 345788888888887643 35544321 110 0 011123 247788999999999995 5665 59
Q ss_pred eEEEEec
Q 040203 124 KLAITVS 130 (202)
Q Consensus 124 Kl~I~V~ 130 (202)
+..|.|.
T Consensus 161 ~g~V~V~ 167 (168)
T 3s8f_B 161 FGTIVVK 167 (168)
T ss_dssp EEEEEEE
T ss_pred EEEEEEe
Confidence 9999986
No 47
>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A
Probab=91.92 E-value=0.16 Score=48.85 Aligned_cols=67 Identities=21% Similarity=0.314 Sum_probs=46.1
Q ss_pred CCceEeCCEEEEeecCC------CceEEEecccCCCCCCCCCCCCCCccCCC---cEEEeCCCCcEEEEcCCCCCCCCC-
Q 040203 53 TKNFVVGDVLTFNFVTN------EHDVLRVPKASYDGCTSSNPIGNPITTGP---TNITLDSAGEHYYICTFGWHCQAG- 122 (202)
Q Consensus 53 ~~tF~vGD~LvF~y~~~------~H~V~~V~~~~Y~~C~~s~~~~~~~s~G~---~~v~L~~~G~~YFiC~v~~HC~~G- 122 (202)
..++++||.+.|..++. .|++..-. +. .. .....|. ..|+.+++|.|||+|+. +|..+
T Consensus 559 eI~VP~GdtVrfiLTN~D~veDViHSF~IPs---lG------IK-~DaiPGrtnsvtFtadkPGvY~y~CSE--~CGa~H 626 (638)
T 3sbq_A 559 EFTVKQGDEVTVTITNIDQIEDVSHGFVVVN---HG------VS-MEISPQQTSSITFVADKPGLHWYYCSW--FCHALH 626 (638)
T ss_dssp EEEEETTCEEEEEEEECCCSTTCCEEEEETT---TT------EE-EEECTTCEEEEEEECCSCEEEEEECCS--CCSTTC
T ss_pred EEEEecCceeEEEEecCCcCCCceeeeEecC---CC------ce-eeeCCCCeEEEEEEcCCCEEEEEECCC--cCCCCc
Confidence 56899999999987652 57765422 10 00 1122333 46778999999999996 67665
Q ss_pred --CeEEEEecC
Q 040203 123 --QKLAITVSA 131 (202)
Q Consensus 123 --mKl~I~V~~ 131 (202)
|+..|.|..
T Consensus 627 s~M~G~ViVEP 637 (638)
T 3sbq_A 627 MEMVGRMMVEP 637 (638)
T ss_dssp TTCEEEEEEEC
T ss_pred ccceEEEEEec
Confidence 999999874
No 48
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=91.53 E-value=0.17 Score=48.32 Aligned_cols=68 Identities=15% Similarity=0.168 Sum_probs=45.6
Q ss_pred CCceEeCCEEEEeecCC------CceEEEecccCCCCCCCCCCCCCCccCCC---cEEEeCCCCcEEEEcCC---CCCCC
Q 040203 53 TKNFVVGDVLTFNFVTN------EHDVLRVPKASYDGCTSSNPIGNPITTGP---TNITLDSAGEHYYICTF---GWHCQ 120 (202)
Q Consensus 53 ~~tF~vGD~LvF~y~~~------~H~V~~V~~~~Y~~C~~s~~~~~~~s~G~---~~v~L~~~G~~YFiC~v---~~HC~ 120 (202)
..++++||.+.|...+. .|++..-. ...+ + ....|. ..|+++++|.|||.|.. ..|
T Consensus 514 ~I~V~~Gd~V~~~ltN~d~~~Dv~Hgf~ip~-~gv~-~--------~i~PG~t~t~~Fta~~pGtY~yhC~e~Cg~~H-- 581 (595)
T 1fwx_A 514 SFTVKEGDEVTVIVTNLDEIDDLTHGFTMGN-YGVA-M--------EIGPQMTSSVTFVAANPGVYWYYCQWFCHALH-- 581 (595)
T ss_dssp EEEEETTCEEEEEEEECCCSTTCCEEEEETT-TTEE-E--------EECTTCEEEEEEECCSCEEEEEECCSCCSTTC--
T ss_pred EEEEECCCEEEEEEEeCCCCCCceeeEEecC-CCcc-e--------eeCCCCeEEEEEECCCCEEEEEECCCCCCCCc--
Confidence 45789999999997652 47775422 1111 1 122233 47788999999999984 345
Q ss_pred CCCeEEEEecCC
Q 040203 121 AGQKLAITVSAT 132 (202)
Q Consensus 121 ~GmKl~I~V~~~ 132 (202)
.||+..|.|...
T Consensus 582 ~gM~G~IiV~p~ 593 (595)
T 1fwx_A 582 MEMRGRMLVEPK 593 (595)
T ss_dssp TTCEEEEEEECC
T ss_pred cCCEEEEEEEcC
Confidence 499999999753
No 49
>1mzy_A Copper-containing nitrite reductase; mutant M182T, gating mechanism, electron oxidoreductase; 1.46A {Rhodobacter sphaeroides} SCOP: b.6.1.3 b.6.1.3 PDB: 1mzz_A 1n70_A 1zv2_A 2a3t_A 2dws_A 2dwt_A 2dy2_A
Probab=80.97 E-value=1.4 Score=37.84 Aligned_cols=75 Identities=20% Similarity=0.256 Sum_probs=47.0
Q ss_pred CceEeCCEEEEeecCC-----CceEEEecccCCCCCCCCCCCCCCccCCC---cEEEeCCCCcEEEEcCCCC-----CCC
Q 040203 54 KNFVVGDVLTFNFVTN-----EHDVLRVPKASYDGCTSSNPIGNPITTGP---TNITLDSAGEHYYICTFGW-----HCQ 120 (202)
Q Consensus 54 ~tF~vGD~LvF~y~~~-----~H~V~~V~~~~Y~~C~~s~~~~~~~s~G~---~~v~L~~~G~~YFiC~v~~-----HC~ 120 (202)
.+++.||.|++++.+. .|.+..-.....+.- ... .....|. ..|+++++|+|||-|...+ |=.
T Consensus 66 i~~~~Gd~v~v~~~N~~~~~h~Hg~~~~~~~~~~~~---~~~-~~i~PG~~~~y~f~~~~~Gt~~yH~h~~~~~~~~~~~ 141 (333)
T 1mzy_A 66 MIVHEGDYVELTLINPPENTMPHNIDFHAATGALGG---GGL-TLINPGEKVVLRFKATRAGAFVYHCAPGGPMIPWHVV 141 (333)
T ss_dssp EEEETTCEEEEEEEECTTCCSCBCCEETTSCSGGGG---GGG-CCBCTTEEEEEEEECCSCEEEEEECCCSTTHHHHHHH
T ss_pred EEecCCCEEEEEEEECCCCcccccceecCCCCCCCC---Cce-eEeCCCCEEEEEEECCCCEEEEEeecCCcccchhhhh
Confidence 4679999999988754 366653221111100 011 1122343 3677789999999998764 666
Q ss_pred CCCeEEEEecCC
Q 040203 121 AGQKLAITVSAT 132 (202)
Q Consensus 121 ~GmKl~I~V~~~ 132 (202)
.||.-.+.|...
T Consensus 142 ~Gl~G~~iV~~~ 153 (333)
T 1mzy_A 142 SGMAGCIMVLPR 153 (333)
T ss_dssp TTCEEEEEEECT
T ss_pred CCCEEEEEEccC
Confidence 899888888753
No 50
>1oe1_A Dissimilatory copper-containing nitrite reductase; denitrification; HET: PG4; 1.04A {Alcaligenes xylosoxidans} SCOP: b.6.1.3 b.6.1.3 PDB: 1oe3_A* 2xwz_A* 2vn3_A 2zon_A* 1haw_A 1hau_A* 2vm4_A* 2vw4_A* 2vw6_A* 2vw7_A* 2vm3_A* 1oe2_A* 2jl0_A* 2xx1_A 2xxg_A* 2xxf_A* 1gs8_A 1wa1_X* 1wa2_X* 2jl3_A* ...
Probab=80.00 E-value=1.6 Score=37.47 Aligned_cols=75 Identities=17% Similarity=0.216 Sum_probs=46.4
Q ss_pred CceEeCCEEEEeecCC-----CceEEEecccCCCCCCCCCCCCCCccCCC---cEEEeCCCCcEEEEcCCCC----CCCC
Q 040203 54 KNFVVGDVLTFNFVTN-----EHDVLRVPKASYDGCTSSNPIGNPITTGP---TNITLDSAGEHYYICTFGW----HCQA 121 (202)
Q Consensus 54 ~tF~vGD~LvF~y~~~-----~H~V~~V~~~~Y~~C~~s~~~~~~~s~G~---~~v~L~~~G~~YFiC~v~~----HC~~ 121 (202)
..++.||.|++++.+. .|++.+=.....+ -...+ .....|. ..|+++++|+|||-|...+ |=..
T Consensus 67 i~v~~Gd~v~v~~~N~~~~~~~h~~~~h~~~~~~---~~~~~-~~i~pG~~~~y~f~~~~~Gt~~yH~h~~~~~~~~~~~ 142 (336)
T 1oe1_A 67 LVVHEGDYVQLTLVNPATNAMPHNVDFHGATGAL---GGAKL-TNVNPGEQATLRFKADRSGTFVYHCAPEGMVPWHVVS 142 (336)
T ss_dssp EEEETTCEEEEEEEECTTCCSCBCCEETTSCSGG---GGGGG-CCBCTTEEEEEEEECCSCEEEEEECCCTTCHHHHHHT
T ss_pred EEEcCCCEEEEEEEcCCCCCccccceECCCCCCC---CCcce-EEeCCCCEEEEEEECCCCeEEEEecCCCCchhHHHhC
Confidence 4678999999988763 4665432111000 00111 1123343 3667789999999998754 4467
Q ss_pred CCeEEEEecCC
Q 040203 122 GQKLAITVSAT 132 (202)
Q Consensus 122 GmKl~I~V~~~ 132 (202)
||.-.|.|...
T Consensus 143 Gl~G~liV~~~ 153 (336)
T 1oe1_A 143 GMSGTLMVLPR 153 (336)
T ss_dssp TCEEEEEEECT
T ss_pred CCeEEEEEecC
Confidence 99998888754
No 51
>1kbv_A ANIA, major outer membrane protein PAN 1; ANIA[NO2-], oxidoreductase; 1.95A {Neisseria gonorrhoeae} SCOP: b.6.1.3 b.6.1.3 PDB: 1kbw_A
Probab=73.49 E-value=2.3 Score=36.69 Aligned_cols=76 Identities=20% Similarity=0.226 Sum_probs=45.4
Q ss_pred CCceEeCCEEEEeecCC-----CceEEEecccCCCCCCCCCCCCCCccCCC---cEEEeCCCCcEEEEcCCC---CCCCC
Q 040203 53 TKNFVVGDVLTFNFVTN-----EHDVLRVPKASYDGCTSSNPIGNPITTGP---TNITLDSAGEHYYICTFG---WHCQA 121 (202)
Q Consensus 53 ~~tF~vGD~LvF~y~~~-----~H~V~~V~~~~Y~~C~~s~~~~~~~s~G~---~~v~L~~~G~~YFiC~v~---~HC~~ 121 (202)
..+++.||+|++++.+. .|++..=--...+. .+.......|. ..|+.+++|+|||-|... .|-..
T Consensus 71 ~i~v~~Gd~v~v~~~N~~~~~~~~~ih~HG~~~~dG----~~~~~~i~PG~~~~y~f~~~~~Gt~wyH~h~~~~~~~~~~ 146 (327)
T 1kbv_A 71 MIRVREGDTVEVEFSNNPSSTVPHNVDFHAATGQGG----GAAATFTAPGRTSTFSFKALQPGLYIYHCAVAPVGMHIAN 146 (327)
T ss_dssp BEEEETTCEEEEEEEECTTCSSCBCCEETTCCSGGG----GTTTTCBCTTEEEEEEEECCSCEEEEEECCCSSHHHHHHT
T ss_pred eEEEeCCCEEEEEEEECCCCCCceeeEeCccccCCC----CCcceeecCCCEEEEEEECCCCeEEEEEeCCCChhhhhhc
Confidence 35789999999987654 35553210000110 01001122343 366678999999999762 35567
Q ss_pred CCeEEEEecCC
Q 040203 122 GQKLAITVSAT 132 (202)
Q Consensus 122 GmKl~I~V~~~ 132 (202)
||.-.|.|...
T Consensus 147 Gl~G~~iV~~~ 157 (327)
T 1kbv_A 147 GMYGLILVEPK 157 (327)
T ss_dssp TCEEEEEEECT
T ss_pred ceEEEEEEecC
Confidence 99999988764
No 52
>2zoo_A Probable nitrite reductase; electron transfer, electron transport, heme, iron, binding, oxidoreductase, transport; HET: SUC HEM; 1.95A {Pseudoalteromonas haloplanktis}
Probab=70.82 E-value=1.9 Score=38.42 Aligned_cols=76 Identities=21% Similarity=0.238 Sum_probs=45.0
Q ss_pred CCceEeCCEEEEeecCC-----CceEEEecccCCCCCCCCCCCCCCccCCC---cEEEeCCCCcEEEEcCC---CCCCCC
Q 040203 53 TKNFVVGDVLTFNFVTN-----EHDVLRVPKASYDGCTSSNPIGNPITTGP---TNITLDSAGEHYYICTF---GWHCQA 121 (202)
Q Consensus 53 ~~tF~vGD~LvF~y~~~-----~H~V~~V~~~~Y~~C~~s~~~~~~~s~G~---~~v~L~~~G~~YFiC~v---~~HC~~ 121 (202)
..+++.||+|++++.+. .|++..=--...+. .... .....|. ..|+++++|+|||-|.. ..|=..
T Consensus 61 ~i~v~~Gd~v~v~~~N~l~~~~~~~iH~HG~~~~dG---~~~~-~~i~pg~~~~y~f~~~~~Gt~~yH~H~~~~~~~~~~ 136 (442)
T 2zoo_A 61 FIRVREGDEIEFNLSNHPSSKMPHNIDLHAVTGPGG---GAES-SFTAPGHTSTFNFKALNPGLYIYHCATAPVGMHIAN 136 (442)
T ss_dssp BEEEETTCEEEEEEEECTTCSSCBCCEETTCCSGGG---GGGG-CCBCTTCEEEEEEECCSCEEEEEECCCSSHHHHHHT
T ss_pred cEEEeCCCEEEEEEEECCCCCCCCCEEecCCcCCCC---CCcc-EEECCCCEEEEEEEcCCCeEEEEecCCCChHHHHhC
Confidence 34778999999988654 35544211000110 0000 0122343 36677899999999953 456668
Q ss_pred CCeEEEEecCC
Q 040203 122 GQKLAITVSAT 132 (202)
Q Consensus 122 GmKl~I~V~~~ 132 (202)
||.-.|.|...
T Consensus 137 Gl~G~~iv~~~ 147 (442)
T 2zoo_A 137 GMYGLILVEPK 147 (442)
T ss_dssp TCEEEEEEECT
T ss_pred ccEEEEEEeCC
Confidence 99988888754
No 53
>1oe1_A Dissimilatory copper-containing nitrite reductase; denitrification; HET: PG4; 1.04A {Alcaligenes xylosoxidans} SCOP: b.6.1.3 b.6.1.3 PDB: 1oe3_A* 2xwz_A* 2vn3_A 2zon_A* 1haw_A 1hau_A* 2vm4_A* 2vw4_A* 2vw6_A* 2vw7_A* 2vm3_A* 1oe2_A* 2jl0_A* 2xx1_A 2xxg_A* 2xxf_A* 1gs8_A 1wa1_X* 1wa2_X* 2jl3_A* ...
Probab=67.62 E-value=4.3 Score=34.77 Aligned_cols=35 Identities=17% Similarity=0.073 Sum_probs=30.1
Q ss_pred cEEEeCCCCcEEEEcCCCCCC-CCCCeEEEEecCCC
Q 040203 99 TNITLDSAGEHYYICTFGWHC-QAGQKLAITVSATP 133 (202)
Q Consensus 99 ~~v~L~~~G~~YFiC~v~~HC-~~GmKl~I~V~~~~ 133 (202)
..|+.+++|.|+|.|....|+ ..||.-.|.|....
T Consensus 285 vlv~~~~pG~y~~~~h~~~~~~~~G~~~~~~V~~~~ 320 (336)
T 1oe1_A 285 ALYTFKQPGVYAYLNHNLIEAFELGAAGHIKVEGKW 320 (336)
T ss_dssp EEEECCSCEEEEEEESSHHHHHTTSCEEEEEEESCC
T ss_pred EEEEcCCCceEEEEechhhccccCCCeEEEEECCCC
Confidence 467778899999999988888 89999999998743
No 54
>3l6w_A Hemocyanin 1; cupredoxin domain, copper-binding protein, metal-binding, oxygen binding; 4.00A {Megathura crenulata} PDB: 3qjo_A
Probab=66.60 E-value=5.2 Score=37.36 Aligned_cols=74 Identities=11% Similarity=0.171 Sum_probs=46.2
Q ss_pred CCceEeCCEEEEeecCCCce--EEEe-cccCCCCCCCCCCCCCCccCC--CcEEEeCCCCcEEEEcCCCCCCCCCC-eEE
Q 040203 53 TKNFVVGDVLTFNFVTNEHD--VLRV-PKASYDGCTSSNPIGNPITTG--PTNITLDSAGEHYYICTFGWHCQAGQ-KLA 126 (202)
Q Consensus 53 ~~tF~vGD~LvF~y~~~~H~--V~~V-~~~~Y~~C~~s~~~~~~~s~G--~~~v~L~~~G~~YFiC~v~~HC~~Gm-Kl~ 126 (202)
+.-++-|-.|+|.=....-+ ++.+ +-.+...|...--. +..= +.+..|+ +|.|||..+...-|+.|- |+.
T Consensus 412 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 487 (491)
T 3l6w_A 412 KVVVKRGTKIMFMSVDEAVTTPMLNLGSYTAMFKCKVPPFS---FHAFELGKMYSVE-SGDYFMTASTTELCNDNNLRIH 487 (491)
T ss_pred eeEeecCCEEEEEecccchhhHHHhhhhhhhhhccccCCCc---cCcccccceEecC-CCceEecCChHHHHhCCceeEE
Confidence 44667788888854332211 1222 34455668764322 2211 1344444 899999999999999998 999
Q ss_pred EEec
Q 040203 127 ITVS 130 (202)
Q Consensus 127 I~V~ 130 (202)
|.|.
T Consensus 488 ~~~~ 491 (491)
T 3l6w_A 488 VHVD 491 (491)
T ss_pred EEeC
Confidence 9884
No 55
>2bw4_A Copper-containing nitrite reductase; oxidoreductase, denitrification, catalysis, enzyme mechanism, nitrate assimilation; 0.90A {Achromobacter cycloclastes} SCOP: b.6.1.3 b.6.1.3 PDB: 1nib_A 1nia_A 1nid_A 1nie_A 1nic_A 1nif_A 2bw5_A 2bwd_A 2bwi_A 2nrd_A 2y1a_A 1kcb_A 1rzp_A* 1rzq_A 2avf_A 1as6_A 1aq8_A 1as7_A 1as8_A 2afn_A ...
Probab=66.37 E-value=4.8 Score=34.51 Aligned_cols=75 Identities=15% Similarity=0.181 Sum_probs=46.2
Q ss_pred CceEeCCEEEEeecCC-----CceEEEecccCCCCCCCCCCCCCCccCCC---cEEEeCCCCcEEEEcCCCC----CCCC
Q 040203 54 KNFVVGDVLTFNFVTN-----EHDVLRVPKASYDGCTSSNPIGNPITTGP---TNITLDSAGEHYYICTFGW----HCQA 121 (202)
Q Consensus 54 ~tF~vGD~LvF~y~~~-----~H~V~~V~~~~Y~~C~~s~~~~~~~s~G~---~~v~L~~~G~~YFiC~v~~----HC~~ 121 (202)
..++.||.|++++.+. .|.+..-.....+ +. .+. .....|. ..|+++++|+|||-|...+ |=..
T Consensus 73 i~v~~Gd~v~v~~~N~~~~~~~hg~~~~~~~~~~--~~-~~~-~~i~PG~~~~y~~~~~~~Gt~wyH~h~~~~~~~~~~~ 148 (340)
T 2bw4_A 73 MVVHENDYVELRLINPDTNTLLHNIDFHAATGAL--GG-GAL-TQVNPGEETTLRFKATKPGVFVYHCAPEGMVPWHVTS 148 (340)
T ss_dssp EEEETTCEEEEEEEECTTCCSCBCCEETTSCSGG--GG-GGG-CCBCTTEEEEEEEECCSCEEEEEECCCTTCHHHHHHT
T ss_pred EEEcCCCEEEEEEEeCCCCCccCcceeCCcCCCC--CC-ccc-eEeCCCCEEEEEEECCCCeEEEEEcCCCCchhhHHhC
Confidence 4678999999988764 3655432111000 00 111 1122343 3677789999999998754 5568
Q ss_pred CCeEEEEecCC
Q 040203 122 GQKLAITVSAT 132 (202)
Q Consensus 122 GmKl~I~V~~~ 132 (202)
||.-.+.|...
T Consensus 149 Gl~G~~iV~~~ 159 (340)
T 2bw4_A 149 GMNGAIMVLPR 159 (340)
T ss_dssp TCEEEEEEECT
T ss_pred cCEEEEEEccC
Confidence 99888888754
No 56
>3gdc_A Multicopper oxidase; beta sandwich, plasmid, oxidoreductase; 1.80A {Arthrobacter SP}
Probab=63.69 E-value=9.6 Score=32.09 Aligned_cols=78 Identities=22% Similarity=0.269 Sum_probs=45.3
Q ss_pred CceEeCCEEEEeecCC---CceEEEe--cccCCCCCCCCCCCCCCccCCC---cEEEeCCCCcEEEEcCCC---CCCCCC
Q 040203 54 KNFVVGDVLTFNFVTN---EHDVLRV--PKASYDGCTSSNPIGNPITTGP---TNITLDSAGEHYYICTFG---WHCQAG 122 (202)
Q Consensus 54 ~tF~vGD~LvF~y~~~---~H~V~~V--~~~~Y~~C~~s~~~~~~~s~G~---~~v~L~~~G~~YFiC~v~---~HC~~G 122 (202)
..++.||.|++++.+. .|++..= .....|.- ..........|. ..|+++.+|++||-|... .|=..|
T Consensus 68 i~~~~Gd~v~v~~~N~~~~~~~iH~HG~~~~~~DG~--p~~~~~~i~PG~~~~y~f~~~~~Gt~~yH~H~~~~~~~~~~G 145 (288)
T 3gdc_A 68 LWAREGDALRIHFTNAGAHPHTIHFHGVHRATMDGT--PGIGAGSIAPGQSFTYEFDATPFGTHLYHCHQSPLAPHIAKG 145 (288)
T ss_dssp EEEETTCEEEEEEEECSSSCBCCEESSCCCGGGSCC--TTSTTCSBCTTCEEEEEEECCSCEEEEEECCCSSHHHHHHTT
T ss_pred EEEeCCCEEEEEEEeCCCCcccEEeccccccccCCC--CCccceeECCCCEEEEEEEcCCCccEEEEecCcchHHHHhCc
Confidence 4789999999988653 2333221 00111110 000001122333 367778999999999875 355689
Q ss_pred CeEEEEecCCC
Q 040203 123 QKLAITVSATP 133 (202)
Q Consensus 123 mKl~I~V~~~~ 133 (202)
|.-.|.|....
T Consensus 146 l~G~liV~~~~ 156 (288)
T 3gdc_A 146 LYGGFIVEPKE 156 (288)
T ss_dssp CEEEEEEECSS
T ss_pred CeEEEEEeCCc
Confidence 98888887643
No 57
>3gdc_A Multicopper oxidase; beta sandwich, plasmid, oxidoreductase; 1.80A {Arthrobacter SP}
Probab=63.43 E-value=2.5 Score=35.80 Aligned_cols=32 Identities=16% Similarity=0.114 Sum_probs=28.2
Q ss_pred EEEeCCCCcEEEEcCCCCCCCCCCeEEEEecC
Q 040203 100 NITLDSAGEHYYICTFGWHCQAGQKLAITVSA 131 (202)
Q Consensus 100 ~v~L~~~G~~YFiC~v~~HC~~GmKl~I~V~~ 131 (202)
.++.+.||.|.|.|-+..|=+.||.-.|.|.+
T Consensus 257 ~~~~~~pG~~~~hCH~~~H~~~GM~~~~~V~~ 288 (288)
T 3gdc_A 257 ELRFPYPGKFMFHAHKTEFAELGWMGFFEVSA 288 (288)
T ss_dssp EECCCSCEEEEEECSSHHHHTTTCEEEEEEEC
T ss_pred EEECCCCEEEEEEecChHHHhcCCCEEEEEeC
Confidence 55567899999999999999999999998864
No 58
>1mzy_A Copper-containing nitrite reductase; mutant M182T, gating mechanism, electron oxidoreductase; 1.46A {Rhodobacter sphaeroides} SCOP: b.6.1.3 b.6.1.3 PDB: 1mzz_A 1n70_A 1zv2_A 2a3t_A 2dws_A 2dwt_A 2dy2_A
Probab=62.40 E-value=4 Score=35.01 Aligned_cols=35 Identities=11% Similarity=0.024 Sum_probs=30.3
Q ss_pred cEEEeCCCCcEEEEcCCCCCC-CCCCeEEEEecCCC
Q 040203 99 TNITLDSAGEHYYICTFGWHC-QAGQKLAITVSATP 133 (202)
Q Consensus 99 ~~v~L~~~G~~YFiC~v~~HC-~~GmKl~I~V~~~~ 133 (202)
..|+.+++|.|+|.|....|+ +.||.-.|.|....
T Consensus 285 v~v~a~~pG~y~~~ch~~~h~~~~Gm~~~~~v~~~~ 320 (333)
T 1mzy_A 285 ALYKFLQPGVYAYVNHNLIEAVHKGATAHVLVEGEW 320 (333)
T ss_dssp EEEECCSCEEEEEEESSHHHHHTTCCEEEEEEESCC
T ss_pred EEEEcCCCEEEEEecChhhhHhhCCCEEEEEEcCCC
Confidence 367778999999999999999 99999999998743
No 59
>1cyx_A CYOA; electron transport; 2.30A {Escherichia coli} SCOP: b.6.1.2 PDB: 1cyw_A
Probab=58.04 E-value=7.7 Score=32.16 Aligned_cols=30 Identities=20% Similarity=0.362 Sum_probs=25.0
Q ss_pred cEEEeCCCCcEEEEcCCCCCCCCC---CeEEEEec
Q 040203 99 TNITLDSAGEHYYICTFGWHCQAG---QKLAITVS 130 (202)
Q Consensus 99 ~~v~L~~~G~~YFiC~v~~HC~~G---mKl~I~V~ 130 (202)
..+..+++|.||..|.. .|..| |++.|.|.
T Consensus 83 l~~~~~~pG~y~g~CsE--~CG~~Hs~M~~~v~vv 115 (205)
T 1cyx_A 83 LHLIANEPGTYDGICAE--ICGPGHSGMKFKAIAT 115 (205)
T ss_dssp EEECCSSSEEEEEEECS--CCSTTSTTCCEEEEEE
T ss_pred EEEEeCCCeEEEEEccc--ccccchhhceEEEEEE
Confidence 36677899999999985 68765 99999988
No 60
>3cg8_A Laccase; oxidoreductase, multicopper blue protein; HET: PG4; 2.68A {Streptomyces coelicolor}
Probab=57.10 E-value=5.1 Score=34.92 Aligned_cols=34 Identities=26% Similarity=0.382 Sum_probs=28.9
Q ss_pred CCCCcEEEEcCCCCCCCCCCeEEEEecCCCCCCC
Q 040203 104 DSAGEHYYICTFGWHCQAGQKLAITVSATPGSSP 137 (202)
Q Consensus 104 ~~~G~~YFiC~v~~HC~~GmKl~I~V~~~~~~sp 137 (202)
+.+|.++|-|.+..|=..||...+.|.......|
T Consensus 279 ~~pG~w~~HCHi~~H~~~GM~g~~~V~~~~~~~P 312 (343)
T 3cg8_A 279 VGAGAWMYHCHVQSHSDMGMVGLFLVKKPDGTIP 312 (343)
T ss_dssp TCSEEEEEEECSHHHHHTTCEEEEEEECTTSCCS
T ss_pred CCCeeEEEeCCCHHHHhccCcEEEEEecCCCCCC
Confidence 5799999999999999999999999987655433
No 61
>3hb3_B Cytochrome C oxidase subunit 2; electron transfer, proton transfer, proton pumping, membrane protein, cell inner membrane, cell membrane, copper; HET: HEA LDA LMT; 2.25A {Paracoccus denitrificans} PDB: 1ar1_B* 3ehb_B* 1qle_B*
Probab=56.51 E-value=8.4 Score=33.55 Aligned_cols=31 Identities=13% Similarity=0.303 Sum_probs=26.0
Q ss_pred cEEEeCCCCcEEEEcCCCCCCCCC---CeEEEEecC
Q 040203 99 TNITLDSAGEHYYICTFGWHCQAG---QKLAITVSA 131 (202)
Q Consensus 99 ~~v~L~~~G~~YFiC~v~~HC~~G---mKl~I~V~~ 131 (202)
..++.+++|.||..|+. .|..| |++.|.|..
T Consensus 231 ~~~~~~~~G~y~g~CsE--~CG~~Hs~M~~~v~vvs 264 (298)
T 3hb3_B 231 LWFSVDQEGVYFGQCSE--LCGINHAYMPIVVKAVS 264 (298)
T ss_dssp EEEECSSSEEEEECCCS--CCSTTTTSCCEEEEEEC
T ss_pred EEEEeCCCEEEEEEccc--ccCcCccCCeeEEEEEc
Confidence 46788999999999985 67765 999999886
No 62
>1sdd_A Coagulation factor V; copper-binding protein, cofactor, blood clottin; HET: NAG NDG; 2.80A {Bos taurus} SCOP: b.6.1.3 b.6.1.3
Probab=56.33 E-value=1.5 Score=37.51 Aligned_cols=77 Identities=13% Similarity=0.255 Sum_probs=32.2
Q ss_pred CCceEeCCEEEEeecCCC-c-eEEEe--cccCCCCCCC--CCCCCCCccCCC---cEEEeCCCCcEEEEcCCCCCCCCCC
Q 040203 53 TKNFVVGDVLTFNFVTNE-H-DVLRV--PKASYDGCTS--SNPIGNPITTGP---TNITLDSAGEHYYICTFGWHCQAGQ 123 (202)
Q Consensus 53 ~~tF~vGD~LvF~y~~~~-H-~V~~V--~~~~Y~~C~~--s~~~~~~~s~G~---~~v~L~~~G~~YFiC~v~~HC~~Gm 123 (202)
..+++.||+++|...+.. . ....+ ....++. +. .+.+ . ...|. ..|+.+++|.++|.|.+..|-..||
T Consensus 216 ~l~v~~G~~vrlrliN~g~~~~~h~~hlhG~~~~~-dG~~~dtv-~-l~pger~~v~~~~~~pG~~~~hch~~~H~~~GM 292 (306)
T 1sdd_A 216 DITVCAHDHISWHLIGMSSGPELFSIHFNGQVLEQ-NHHKISAI-T-LVSATSTTANMTVSPEGRWTIASLIPRHFQAGM 292 (306)
T ss_dssp CCCCCCC------BBCCCSSSCEECCBCSSTTCEE-TTEECSCC-C-EETTCCBC--------CCCCCBCCSTTTGGGTC
T ss_pred ceEEcCCCEEEEEEEeCCCCCccEEEEECCcEeee-CCEEcceE-E-ECCCcEEEEEEEcCCCeEEEEEeCChHHHhcCC
Confidence 457788999988876432 1 22212 1111111 00 1111 1 12232 3666788999999999999999999
Q ss_pred eEEEEecCC
Q 040203 124 KLAITVSAT 132 (202)
Q Consensus 124 Kl~I~V~~~ 132 (202)
...+.|...
T Consensus 293 ~~~~~V~~~ 301 (306)
T 1sdd_A 293 QAYIDIKNC 301 (306)
T ss_dssp BCCC-----
T ss_pred eEEEEEecC
Confidence 988888753
No 63
>4i1k_A B3 domain-containing transcription factor VRN1; B3 domain beta-barrel, DNA binding protein; 1.60A {Arabidopsis thaliana}
Probab=54.86 E-value=3.5 Score=32.09 Aligned_cols=26 Identities=31% Similarity=0.459 Sum_probs=19.3
Q ss_pred ccCCceEeCCEEEEeecCCCceEEEe
Q 040203 51 AATKNFVVGDVLTFNFVTNEHDVLRV 76 (202)
Q Consensus 51 As~~tF~vGD~LvF~y~~~~H~V~~V 76 (202)
+..+.+++||.++|++.....-+++|
T Consensus 112 v~dn~L~~GD~cvFeli~~~~~~f~V 137 (146)
T 4i1k_A 112 TLENNLGEGDVCVFELLRTRDFVLKV 137 (146)
T ss_dssp HHHTTCCTTCEEEEEECSSSSCEEEE
T ss_pred HHHcCCCCCCEEEEEEecCCceEEEE
Confidence 56789999999999997543225555
No 64
>3kw8_A Laccase, putative copper oxidase; two-domain laccase, oxidoreductase, multicopper blue protein; HET: PG4 PGE; 2.29A {Streptomyces coelicolor} PDB: 4gxf_A* 4gy4_A*
Probab=54.50 E-value=6.8 Score=32.82 Aligned_cols=38 Identities=26% Similarity=0.393 Sum_probs=31.0
Q ss_pred EEEeC---CCCcEEEEcCCCCCCCCCCeEEEEecCCCCCCC
Q 040203 100 NITLD---SAGEHYYICTFGWHCQAGQKLAITVSATPGSSP 137 (202)
Q Consensus 100 ~v~L~---~~G~~YFiC~v~~HC~~GmKl~I~V~~~~~~sp 137 (202)
.+..+ .+|.++|-|-+..|=..||...+.|......-|
T Consensus 231 ~~~~~~~~npG~w~~HCH~~~H~~~GM~g~~~V~~~~~~~p 271 (276)
T 3kw8_A 231 QIIAGEGVGAGAWMYHCHVQSHSDMGMVGLFLVKKPDGTIP 271 (276)
T ss_dssp EEETTTTTCSEEEEEEECSHHHHHTTCEEEEEEECTTSCCT
T ss_pred EEEeccCCCCCeEEEECCCchHhhCCCeEEEEEeCCCCCCC
Confidence 44444 589999999999999999999999998655433
No 65
>2gsm_B Cytochrome C oxidase subunit 2; transmembrane protein complex, oxidoreductase; HET: DMU HEA TRD; 2.00A {Rhodobacter sphaeroides} SCOP: b.6.1.2 f.17.2.1 PDB: 3dtu_B* 3fye_B* 3fyi_B* 3omi_B* 3om3_B* 3oma_B* 3omn_B* 1m56_B* 1m57_B*
Probab=53.90 E-value=9.9 Score=32.33 Aligned_cols=31 Identities=13% Similarity=0.281 Sum_probs=25.9
Q ss_pred cEEEeCCCCcEEEEcCCCCCCCCC---CeEEEEecC
Q 040203 99 TNITLDSAGEHYYICTFGWHCQAG---QKLAITVSA 131 (202)
Q Consensus 99 ~~v~L~~~G~~YFiC~v~~HC~~G---mKl~I~V~~ 131 (202)
..++.+++|.||..|+. .|..| |++.|.|..
T Consensus 213 ~~~~~~~~G~y~g~Cse--~CG~~H~~M~~~v~vv~ 246 (262)
T 2gsm_B 213 LWFRAEREGIFFGQCSE--LCGISHAYMPITVKVVS 246 (262)
T ss_dssp EEEECCSCEEEEECCCS--CCSTTGGGCCEEEEEEC
T ss_pred EEEecCCcEEEEEEChH--hcccCcccCeEEEEEEc
Confidence 36788999999999984 68876 899888875
No 66
>1v54_B Cytochrome C oxidase polypeptide II; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: b.6.1.2 f.17.2.1 PDB: 1oco_B* 1occ_B* 1ocz_B* 1ocr_B* 1v55_B* 2dyr_B* 2dys_B* 2eij_B* 2eik_B* 2eil_B* 2eim_B* 2ein_B* 2occ_B* 2y69_B* 2ybb_M* 2zxw_B* 3abk_B* 3abl_B* 3abm_B* 3ag1_B* ...
Probab=51.11 E-value=9.7 Score=31.70 Aligned_cols=30 Identities=13% Similarity=0.320 Sum_probs=25.1
Q ss_pred EEEeCCCCcEEEEcCCCCCCCCC---CeEEEEecC
Q 040203 100 NITLDSAGEHYYICTFGWHCQAG---QKLAITVSA 131 (202)
Q Consensus 100 ~v~L~~~G~~YFiC~v~~HC~~G---mKl~I~V~~ 131 (202)
.++.+++|.||..|+. .|..| |++.|.|..
T Consensus 183 ~~~~~~~G~y~g~Cse--~CG~~Hs~M~~~v~vv~ 215 (227)
T 1v54_B 183 TLMSSRPGLYYGQCSE--ICGSNHSFMPIVLELVP 215 (227)
T ss_dssp EECCSSCEEEEECCCS--CCSTTGGGCCEEEEEEC
T ss_pred EEecCCcEEEEEEehh--hcccccccCeEEEEEEc
Confidence 6677899999999985 78876 888888865
No 67
>1yel_A AT1G16640; CESG, protein structure initiative, structural genomics, center for eukaryotic structural genomics, unknown function; NMR {Arabidopsis thaliana} SCOP: b.142.1.2
Probab=48.13 E-value=6.9 Score=28.14 Aligned_cols=19 Identities=21% Similarity=0.350 Sum_probs=16.1
Q ss_pred ccCCceEeCCEEEEeecCC
Q 040203 51 AATKNFVVGDVLTFNFVTN 69 (202)
Q Consensus 51 As~~tF~vGD~LvF~y~~~ 69 (202)
+..+.+++||.|+|+|...
T Consensus 73 v~~~~L~~GD~lvF~~~~~ 91 (104)
T 1yel_A 73 VKDNNLEDGKYLQFIYDRD 91 (104)
T ss_dssp HHHHTCCTTCEEEEEECSS
T ss_pred HHHcCCCCCCEEEEEEcCC
Confidence 5577999999999999754
No 68
>3iuw_A Activating signal cointegrator; NP_814290.1, structural GENO joint center for structural genomics, JCSG, protein structu initiative; HET: MSE; 1.58A {Enterococcus faecalis V583}
Probab=46.00 E-value=7.9 Score=27.74 Aligned_cols=16 Identities=38% Similarity=0.910 Sum_probs=12.6
Q ss_pred CceEeCCEEEEe-ecCC
Q 040203 54 KNFVVGDVLTFN-FVTN 69 (202)
Q Consensus 54 ~tF~vGD~LvF~-y~~~ 69 (202)
+.|++||.|+|+ |..+
T Consensus 36 r~~~vGD~l~l~E~~~g 52 (83)
T 3iuw_A 36 RNFQVGDILILEEYMNG 52 (83)
T ss_dssp SCCCTTCEEEEEEEETT
T ss_pred cCCCCCCEEEEEEccCC
Confidence 469999999995 7544
No 69
>2zwn_A Two-domain type laccase; muticopper oxidase, oxidoreductase; 1.70A {Metagenomes}
Probab=44.04 E-value=21 Score=30.72 Aligned_cols=77 Identities=22% Similarity=0.323 Sum_probs=42.7
Q ss_pred CCceEeCCEEEEeecCCC---ceE-----EEecccCCCCCCCCCCCCCCccCCC---cEEEeCCCCcEEEEcCCCC--CC
Q 040203 53 TKNFVVGDVLTFNFVTNE---HDV-----LRVPKASYDGCTSSNPIGNPITTGP---TNITLDSAGEHYYICTFGW--HC 119 (202)
Q Consensus 53 ~~tF~vGD~LvF~y~~~~---H~V-----~~V~~~~Y~~C~~s~~~~~~~s~G~---~~v~L~~~G~~YFiC~v~~--HC 119 (202)
...++.||+|++++.+.. ++| .+......|.= ..........|. ..|+++++|+|||-|.... |=
T Consensus 36 ~I~v~~Gd~v~v~v~N~l~~~~siH~HG~~~~~~~~~DGv--p~vtq~~I~PG~~~~y~f~~~~~Gt~wyH~H~~~~~q~ 113 (339)
T 2zwn_A 36 LIHVQEGDDVIVNVTNNTSLPHTIHWHGVHQKGTWRSDGV--PGVTQQPIEAGDSYTYKFKADRIGTLWYHCHVNVNEHV 113 (339)
T ss_dssp EEEEETTCEEEEEEEEESSSCBCCEEETCCCTTCGGGSCC--BTTTBCCBCTTCEEEEEEECCSCEEEEEECCSSHHHHT
T ss_pred eEEEECCCEEEEEEEECCCCCccEEeCCCCcCCCcccCCC--CccccCccCCCCeEEEEEECCCCEEEEEEecCCchhhh
Confidence 357899999999886532 222 21111001110 000000112333 3777888999999998643 33
Q ss_pred C-CCCeEEEEecC
Q 040203 120 Q-AGQKLAITVSA 131 (202)
Q Consensus 120 ~-~GmKl~I~V~~ 131 (202)
. .||.-.+.|..
T Consensus 114 ~~~Gl~G~liV~p 126 (339)
T 2zwn_A 114 GVRGMWGPLIVDP 126 (339)
T ss_dssp TTSCCEEEEEEEC
T ss_pred hcCCceEeEEecC
Confidence 4 78887787764
No 70
>1aoz_A Ascorbate oxidase; oxidoreductase(oxygen acceptor); HET: NAG; 1.90A {Cucurbita pepo var} SCOP: b.6.1.3 b.6.1.3 b.6.1.3 PDB: 1aso_A* 1asp_A* 1asq_A*
Probab=43.49 E-value=49 Score=30.37 Aligned_cols=79 Identities=20% Similarity=0.261 Sum_probs=48.2
Q ss_pred CCceEeCCEEEEeecCCC----ceEEE----ecccC-CCCCCCCCCCCCCccCCC---cEEEeCCCCcEEEEcCCCCCCC
Q 040203 53 TKNFVVGDVLTFNFVTNE----HDVLR----VPKAS-YDGCTSSNPIGNPITTGP---TNITLDSAGEHYYICTFGWHCQ 120 (202)
Q Consensus 53 ~~tF~vGD~LvF~y~~~~----H~V~~----V~~~~-Y~~C~~s~~~~~~~s~G~---~~v~L~~~G~~YFiC~v~~HC~ 120 (202)
...++.||.|+.++.+.. ++|.. +.... .|. ...........|. ..|+++++|+|||=|....+=.
T Consensus 35 ~I~~~~GD~v~v~v~N~l~~~~tsiHwHGl~~~~~~~~DG--v~~vtq~~I~PG~s~tY~f~~~~~GT~wYHsH~~~q~~ 112 (552)
T 1aoz_A 35 TIRANAGDSVVVELTNKLHTEGVVIHWHGILQRGTPWADG--TASISQCAINPGETFFYNFTVDNPGTFFYHGHLGMQRS 112 (552)
T ss_dssp CEEEETTCEEEEEEEECCSSCCBCEEEETCCCTTCGGGSC--CBTTTBCCBCTTCEEEEEEECCSCEEEEEEECSTTTGG
T ss_pred cEEEeCCCEEEEEEEeCCCCCCeeEEeCCCccCCCcccCC--CcccccCCcCCCCeEEEEEECCCCEEEEEEECchhHHh
Confidence 357899999999887543 22221 11110 111 0000000112333 3777889999999999988888
Q ss_pred CCCeEEEEecCCC
Q 040203 121 AGQKLAITVSATP 133 (202)
Q Consensus 121 ~GmKl~I~V~~~~ 133 (202)
.||.-.|.|....
T Consensus 113 ~Gl~G~liV~~~~ 125 (552)
T 1aoz_A 113 AGLYGSLIVDPPQ 125 (552)
T ss_dssp GTCEEEEEEECCT
T ss_pred ccCeeeEEEeCCc
Confidence 8999899888754
No 71
>1fft_B Ubiquinol oxidase; electron transport, cytochrome oxidase, membrane protein, oxidoreductase; HET: HEM HEO; 3.50A {Escherichia coli} SCOP: b.6.1.2 f.17.2.1
Probab=43.06 E-value=13 Score=32.65 Aligned_cols=69 Identities=12% Similarity=0.128 Sum_probs=42.2
Q ss_pred CCceEeCCEEEEeecCC--CceEEEecccCCCCCCCCCCCCCCccCCCcEEEeCCCCcEEEEcCCCCCCCCC---CeEEE
Q 040203 53 TKNFVVGDVLTFNFVTN--EHDVLRVPKASYDGCTSSNPIGNPITTGPTNITLDSAGEHYYICTFGWHCQAG---QKLAI 127 (202)
Q Consensus 53 ~~tF~vGD~LvF~y~~~--~H~V~~V~~~~Y~~C~~s~~~~~~~s~G~~~v~L~~~G~~YFiC~v~~HC~~G---mKl~I 127 (202)
...+.+|..+.|.-++. .|+... .+-..+ . +.+ . -......++.+++|.||..|.. .|..| |++.|
T Consensus 152 ~l~lP~g~~V~~~lTS~DViHsf~I-P~lg~k-~---Dai-P-Gr~n~~~~~~~~~G~y~g~CsE--~CG~~Hs~M~~~v 222 (315)
T 1fft_B 152 EIAFPANTPVYFKVTSNSVMNSFFI-PRLGSQ-I---YAM-A-GMQTRLHLIANEPGTYDGISAS--YSGPGFSGMKFKA 222 (315)
T ss_dssp BCCCCSSSEEEEEECBSSSCEEEEE-GGGTEE-E---EEC-B-TSCEEEEEECCSCBCCEEBCCS--CCSTTTTTCCEEC
T ss_pred eEEEeCCCEEEEEEEeCCccceeee-cccCcE-E---eec-C-CcceeeEEecCCCeEEEEeccc--cchhhHHhccceE
Confidence 45778888888888643 244432 211100 0 011 0 0011236788999999999984 68765 99999
Q ss_pred Eec
Q 040203 128 TVS 130 (202)
Q Consensus 128 ~V~ 130 (202)
.|.
T Consensus 223 ~vv 225 (315)
T 1fft_B 223 IAT 225 (315)
T ss_dssp CBC
T ss_pred EEe
Confidence 888
No 72
>1kbv_A ANIA, major outer membrane protein PAN 1; ANIA[NO2-], oxidoreductase; 1.95A {Neisseria gonorrhoeae} SCOP: b.6.1.3 b.6.1.3 PDB: 1kbw_A
Probab=41.73 E-value=15 Score=31.46 Aligned_cols=35 Identities=11% Similarity=0.140 Sum_probs=29.2
Q ss_pred cEEEeCCCCcEEEEcCCCCCC-CCCCeEEEEecCCC
Q 040203 99 TNITLDSAGEHYYICTFGWHC-QAGQKLAITVSATP 133 (202)
Q Consensus 99 ~~v~L~~~G~~YFiC~v~~HC-~~GmKl~I~V~~~~ 133 (202)
..|+.+++|.|+|.|....|| ..||.-.|.|...+
T Consensus 274 v~v~~~~pG~y~l~~h~~~~~~~~g~~a~l~~~g~~ 309 (327)
T 1kbv_A 274 VEFKVDIPGNYTLVDHSIFRAFNKGALGQLKVEGAE 309 (327)
T ss_dssp EEEEECSCEEEEEEESSTHHHHHSSCEEEEEEESCC
T ss_pred EEEEeCCCeEEEEEeccccccccCCcEEEEEECCCC
Confidence 366778899999999999998 78998888887643
No 73
>1v10_A Laccase; multicopper blue oxidase, oxidase; 1.7A {Rigidoporus lignosus} SCOP: b.6.1.3 b.6.1.3 b.6.1.3
Probab=41.43 E-value=28 Score=31.83 Aligned_cols=34 Identities=18% Similarity=0.252 Sum_probs=28.2
Q ss_pred EEEe-CCCCcEEEEcCCCCCCCCCCeEEEEecCCC
Q 040203 100 NITL-DSAGEHYYICTFGWHCQAGQKLAITVSATP 133 (202)
Q Consensus 100 ~v~L-~~~G~~YFiC~v~~HC~~GmKl~I~V~~~~ 133 (202)
.|++ +++|+|||=|....|=..||--.+.|..+.
T Consensus 117 ~f~~~~~~GT~wYH~H~~~q~~~Gl~G~liV~~~~ 151 (521)
T 1v10_A 117 DFVVPGQAGTYWYHSHLSTQYCDGLRGAFVVYDPN 151 (521)
T ss_dssp EEECTTCCEEEEEEECSTTGGGGTCEEEEEEECTT
T ss_pred EEecCCCCccEEEEeccCCchhcCceEEEEEcCCc
Confidence 6664 568999999999888888999999888653
No 74
>3tas_A Small laccase, multi-copper oxidase; two-domain laccase, oxidoreductase, secreted; HET: PG4; 2.30A {Streptomyces viridosporus} PDB: 3tbb_A 3tbc_A*
Probab=40.11 E-value=31 Score=29.31 Aligned_cols=33 Identities=27% Similarity=0.422 Sum_probs=28.7
Q ss_pred CCCcEEEEcCCCCCCCCCCeEEEEecCCCCCCC
Q 040203 105 SAGEHYYICTFGWHCQAGQKLAITVSATPGSSP 137 (202)
Q Consensus 105 ~~G~~YFiC~v~~HC~~GmKl~I~V~~~~~~sp 137 (202)
.||.+.|-|-+..|=..||.-.+.|.......|
T Consensus 245 nPG~w~~HCHi~~H~~~GM~~~f~V~~~d~~~p 277 (313)
T 3tas_A 245 GAGAWMYHCHVQSHSDMGMVGLFLVKKPDGTIP 277 (313)
T ss_dssp CSEEEEEEECSHHHHHTTCEEEEEEECTTCCCT
T ss_pred CCEeEEEEeCChHHHHCCCeEEEEEECCCCCCC
Confidence 489999999999999999999999998765443
No 75
>3t9w_A Small laccase, multi-copper oxidase; two-domain copper oxidase, Cu-binding, oxidoreducta; 1.50A {Amycolatopsis SP}
Probab=38.87 E-value=11 Score=31.95 Aligned_cols=32 Identities=22% Similarity=0.321 Sum_probs=28.0
Q ss_pred CCCCcEEEEcCCCCCCCCCCeEEEEecCCCCC
Q 040203 104 DSAGEHYYICTFGWHCQAGQKLAITVSATPGS 135 (202)
Q Consensus 104 ~~~G~~YFiC~v~~HC~~GmKl~I~V~~~~~~ 135 (202)
+.||.+.|-|-+..|=+.||...+.|...+..
T Consensus 260 dnPG~w~~HCHi~~H~~~GM~~~f~V~~~~~~ 291 (299)
T 3t9w_A 260 VGPGMWMYHCHVQNHSDMGMAGMFLVRNADGT 291 (299)
T ss_dssp TCSEEEEEEECSHHHHHTTCEEEEEEECTTSC
T ss_pred CCCeeEEEEcCCHHHHhcCCeEEEEEECCCCC
Confidence 35899999999999999999999999886653
No 76
>1zpu_A Iron transport multicopper oxidase FET3; ferroxidase, oxidoreduc; HET: NAG BMA MAN NDG; 2.80A {Saccharomyces cerevisiae}
Probab=38.76 E-value=58 Score=29.89 Aligned_cols=79 Identities=22% Similarity=0.293 Sum_probs=48.0
Q ss_pred CCceEeCCEEEEeecCCC---------ceEEEecccCCCCCCCCCCCCCCccCCC---cEEEeC-CCCcEEEEcCCCCCC
Q 040203 53 TKNFVVGDVLTFNFVTNE---------HDVLRVPKASYDGCTSSNPIGNPITTGP---TNITLD-SAGEHYYICTFGWHC 119 (202)
Q Consensus 53 ~~tF~vGD~LvF~y~~~~---------H~V~~V~~~~Y~~C~~s~~~~~~~s~G~---~~v~L~-~~G~~YFiC~v~~HC 119 (202)
...++.||.|+.++.+.. |-+.+-.....|. ...........|. ..|+++ ++|+|||-|....|=
T Consensus 35 ~i~~~~Gd~v~v~v~N~l~~~~tsiHwHG~~~~~~~~~DG--~~~vtq~pI~PG~~~~Y~f~~~~~~GT~wYH~H~~~q~ 112 (534)
T 1zpu_A 35 DITVNKGDRVQIYLTNGMNNTNTSMHFHGLFQNGTASMDG--VPFLTQCPIAPGSTMLYNFTVDYNVGTYWYHSHTDGQY 112 (534)
T ss_dssp CEEEETTCEEEEEEECCCSSCCBCCEEETCCCTTCGGGSC--CBTTTBCCBCTTCEEEEEEECSSCCEEEEEECCSSSGG
T ss_pred cEEEECCCEEEEEEEeCCCCCCeeEEcCCcccCCCCcccC--CCccccCCcCCCCeEEEEEEeCccceeEEEEEcCcccc
Confidence 357899999999987653 2222110000111 0000000112233 377777 899999999998888
Q ss_pred CCCCeEEEEecCCC
Q 040203 120 QAGQKLAITVSATP 133 (202)
Q Consensus 120 ~~GmKl~I~V~~~~ 133 (202)
..||.-.+.|....
T Consensus 113 ~~Gl~G~liV~~~~ 126 (534)
T 1zpu_A 113 EDGMKGLFIIKDDS 126 (534)
T ss_dssp GGTCEEEEEEECTT
T ss_pred cCcceeeEEeCCCC
Confidence 88999999888753
No 77
>2r7e_A Coagulation factor VIII; ceruloplasmin fold, cupper protein fold, C2 domain fold, ACU blood coagulation, disease mutation, glycoprotein; HET: NAG BMA MAN; 3.70A {Homo sapiens} PDB: 3cdz_A*
Probab=36.69 E-value=34 Score=32.97 Aligned_cols=35 Identities=20% Similarity=0.395 Sum_probs=29.3
Q ss_pred cEEEeCCCCcEEEEcCCCCCCCCCCeEEEEecCCC
Q 040203 99 TNITLDSAGEHYYICTFGWHCQAGQKLAITVSATP 133 (202)
Q Consensus 99 ~~v~L~~~G~~YFiC~v~~HC~~GmKl~I~V~~~~ 133 (202)
..++.+.+|.++|-|-+..|=..||.-.+.|...+
T Consensus 297 v~~~~~~pG~w~~hCH~~~H~~~GM~~~~~V~~~~ 331 (742)
T 2r7e_A 297 AQTLLMDLGQFLLFCHISSHQHDGMEAYVKVDSCP 331 (742)
T ss_dssp EEECCCSCSEECCCCCSSSSSTTSCCBCEEECCCC
T ss_pred EEEEeCCCeeEEEEeCChhHHhCCCeEEEEEecCC
Confidence 35566789999999999999999998888887643
No 78
>2q9o_A Laccase-1; multicopper oxidase, 2-OXOH oxidoreductase; HET: OHI NAG MAN GOL; 1.30A {Melanocarpus albomyces} SCOP: b.6.1.3 b.6.1.3 b.6.1.3 PDB: 3fu7_A* 3fu8_A* 3fu7_B* 1gw0_A* 2ih9_A* 2ih8_A* 3fu9_A* 3qpk_A* 3dkh_A* 3pps_A*
Probab=36.67 E-value=30 Score=32.00 Aligned_cols=77 Identities=17% Similarity=0.201 Sum_probs=46.9
Q ss_pred CceEeCCEEEEeecCCC----ceEEE----ecc-cCCCCCCCCCCCCCCccC-CC---cEEEeCCCCcEEEEcCCCCCCC
Q 040203 54 KNFVVGDVLTFNFVTNE----HDVLR----VPK-ASYDGCTSSNPIGNPITT-GP---TNITLDSAGEHYYICTFGWHCQ 120 (202)
Q Consensus 54 ~tF~vGD~LvF~y~~~~----H~V~~----V~~-~~Y~~C~~s~~~~~~~s~-G~---~~v~L~~~G~~YFiC~v~~HC~ 120 (202)
..++.||.|++++.+.. ++|.. +.. ..+|. ........... |. ..|+++++|+|||-|....|=.
T Consensus 69 i~~~~GD~v~v~v~N~l~~~~tsiHwHG~~~~~~~~~DG--~~~~tq~~I~P~G~~~~Y~f~~~q~GT~wYH~H~~~q~~ 146 (559)
T 2q9o_A 69 IVANWGDTVEVTVINNLVTNGTSIHWHGIXQKDTNLHDG--ANGVTECPIPPKGGQRTYRWRARQYGTSWYHSHFSAQYG 146 (559)
T ss_dssp EEEETTCEEEEEEEEECSSCCBCEEEETCCCTTCGGGSC--CBTTTBCCBCTTTEEEEEEEECCSCEEEEEEECSTTGGG
T ss_pred EEEeCCCEEEEEEEeCCCCCCceEEcCCCccCCCCCcCC--CCccccCccCCCCCeEEEEEECCCCEEEEEEEcccchhc
Confidence 46789999999887543 33322 110 01111 00000001122 43 3778889999999999988888
Q ss_pred CCCeEEEEecCC
Q 040203 121 AGQKLAITVSAT 132 (202)
Q Consensus 121 ~GmKl~I~V~~~ 132 (202)
.||.-.|.|..+
T Consensus 147 ~Gl~G~liV~~~ 158 (559)
T 2q9o_A 147 NGVVGTIQINGP 158 (559)
T ss_dssp GTCEEEEEEECC
T ss_pred CCceEEEEecCC
Confidence 899988888764
No 79
>2hzs_I RNA polymerase II mediator complex subunit 8; beta barrel, channel, helix, transcription; 2.70A {Saccharomyces cerevisiae}
Probab=36.53 E-value=0.56 Score=26.44 Aligned_cols=19 Identities=47% Similarity=0.803 Sum_probs=14.3
Q ss_pred CCceEeCCEEEEeecCCCc
Q 040203 53 TKNFVVGDVLTFNFVTNEH 71 (202)
Q Consensus 53 ~~tF~vGD~LvF~y~~~~H 71 (202)
++.|.|.|+|.|.|....|
T Consensus 4 skpfnvddvlkftftgekh 22 (27)
T 2hzs_I 4 SKPFNVDDVLKFTFTGEKH 22 (27)
T ss_dssp --CCCHHHHHHHHHHCCCC
T ss_pred CCCcChhheEEEEeccccc
Confidence 5789999999999986544
No 80
>3sqr_A Laccase; multicopper oxidase, glycosylation, oxidoreductase; HET: NAG BMA MAN; 1.67A {Botrytis aclada}
Probab=36.23 E-value=60 Score=30.44 Aligned_cols=34 Identities=12% Similarity=0.256 Sum_probs=28.7
Q ss_pred cEEEeCCCCcEEEEcCCCCCCCCCCeEEEEecCC
Q 040203 99 TNITLDSAGEHYYICTFGWHCQAGQKLAITVSAT 132 (202)
Q Consensus 99 ~~v~L~~~G~~YFiC~v~~HC~~GmKl~I~V~~~ 132 (202)
..|+++++|+|||=|....+=..|+.-.|.|..+
T Consensus 155 Y~f~~~q~GT~WYHsH~~~q~~~GL~G~lIV~~p 188 (580)
T 3sqr_A 155 YKFQVTQYGTTWYHSHFSLQYGDGLFGPLIINGP 188 (580)
T ss_dssp EEEECCCCEEEEEEECSTTGGGGTCEEEEEEECC
T ss_pred EEEECCCCcceEEeecccccccCcCEEEEEeeCc
Confidence 3778889999999999887777899888888754
No 81
>3t6v_A Laccase; beta barrel, oxidoreductase; HET: CBS; 2.00A {Steccherinum ochraceum} PDB: 3t6w_A* 3t6x_A* 3t6z_A* 3t71_A*
Probab=34.37 E-value=65 Score=29.37 Aligned_cols=34 Identities=18% Similarity=0.221 Sum_probs=28.3
Q ss_pred EEEe-CCCCcEEEEcCCCCCCCCCCeEEEEecCCC
Q 040203 100 NITL-DSAGEHYYICTFGWHCQAGQKLAITVSATP 133 (202)
Q Consensus 100 ~v~L-~~~G~~YFiC~v~~HC~~GmKl~I~V~~~~ 133 (202)
.|++ +++|+|||-|....|=..|+.-.|.|..+.
T Consensus 97 ~f~~~~~~GT~wYHsH~~~q~~~GL~G~lIV~~~~ 131 (495)
T 3t6v_A 97 NFNVPGMAGTYWYHSHLTTQYCDGLRGPFVVYDPN 131 (495)
T ss_dssp EEECTTCCEEEEEEECSTTGGGGTCEEEEEEECTT
T ss_pred EEEeCCCCceeeeeccchhHHhcCceEEEEEcCcc
Confidence 6777 679999999998877778999999887643
No 82
>2zoo_A Probable nitrite reductase; electron transfer, electron transport, heme, iron, binding, oxidoreductase, transport; HET: SUC HEM; 1.95A {Pseudoalteromonas haloplanktis}
Probab=33.71 E-value=25 Score=31.00 Aligned_cols=34 Identities=9% Similarity=0.174 Sum_probs=28.6
Q ss_pred EEEeCCCCcEEEEcCCCCCC-CCCCeEEEEecCCC
Q 040203 100 NITLDSAGEHYYICTFGWHC-QAGQKLAITVSATP 133 (202)
Q Consensus 100 ~v~L~~~G~~YFiC~v~~HC-~~GmKl~I~V~~~~ 133 (202)
.|+++++|.|+|.|....|+ ..||...+.|...+
T Consensus 265 ~v~~~~~G~y~~~~~~~~~~~~~g~~a~l~v~~~~ 299 (442)
T 2zoo_A 265 EFKVEVPGTFILVDHSIFRAFNKGALAMLKVEGPD 299 (442)
T ss_dssp EEECCSCEEEEEEESSTHHHHTTSCEEEEEEESCC
T ss_pred EEEcCCCCeEEEEecccccccccCceEEEEecCCC
Confidence 67788999999999988887 78998888887644
No 83
>3g5w_A Multicopper oxidase type 1; two domain, laccase, nitrifier, metal B protein; 1.90A {Nitrosomonas europaea}
Probab=33.65 E-value=29 Score=29.61 Aligned_cols=78 Identities=19% Similarity=0.268 Sum_probs=43.0
Q ss_pred CCceEeCCEEEEeecCC---CceEEEe--cc---cCCCCCCCCCCCCCCccCCC---cEEEeCCCCcEEEEcCCCCC-C-
Q 040203 53 TKNFVVGDVLTFNFVTN---EHDVLRV--PK---ASYDGCTSSNPIGNPITTGP---TNITLDSAGEHYYICTFGWH-C- 119 (202)
Q Consensus 53 ~~tF~vGD~LvF~y~~~---~H~V~~V--~~---~~Y~~C~~s~~~~~~~s~G~---~~v~L~~~G~~YFiC~v~~H-C- 119 (202)
...++.||.|++++.+. .|++..- .. ...|. ...........|. ..|+++++|++||-|....+ .
T Consensus 35 ~i~~~~Gd~v~v~~~N~l~~~~siH~HG~~~~~~~~~DG--~p~~t~~~i~PG~~~~y~f~~~~~Gt~wYH~H~~~~~~~ 112 (318)
T 3g5w_A 35 LIHVMEGDDVTVNVTNMTTLPHTIHWHGMLQRGTWQSDG--VPHATQHAIEPGDTFTYKFKAEPAGTMWYHCHVNVNEHV 112 (318)
T ss_dssp EEEEETTCEEEEEEEECSSSCBCCEEETCCCTTCGGGSC--CBTTTBCCBCTTCEEEEEEECCSCEEEEEECCSSHHHHH
T ss_pred eEEEeCCCEEEEEEEeCCCCceeEEecCcCCCCCcccCC--CcccccccCCCCCEEEEEEEcCCCEEEEEEccCChhhhh
Confidence 34789999999998753 2333221 00 01111 0000000112333 37778899999999986321 1
Q ss_pred -CCCCeEEEEecCC
Q 040203 120 -QAGQKLAITVSAT 132 (202)
Q Consensus 120 -~~GmKl~I~V~~~ 132 (202)
..||.-.|.|...
T Consensus 113 ~~~Gl~G~lIV~~~ 126 (318)
T 3g5w_A 113 TMRGMWGPLIVEPK 126 (318)
T ss_dssp HHSCCEEEEEEECS
T ss_pred ccCCCEEEEEEcCC
Confidence 2699888878653
No 84
>1sdd_B Coagulation factor V; copper-binding protein, cofactor, blood clottin; HET: NAG NDG; 2.80A {Bos taurus} SCOP: b.6.1.3 b.6.1.3 b.18.1.2 b.18.1.2
Probab=32.98 E-value=18 Score=33.96 Aligned_cols=32 Identities=13% Similarity=0.102 Sum_probs=28.7
Q ss_pred EEEeCCCCcEEEEcCCCCCCCCCCeEEEEecC
Q 040203 100 NITLDSAGEHYYICTFGWHCQAGQKLAITVSA 131 (202)
Q Consensus 100 ~v~L~~~G~~YFiC~v~~HC~~GmKl~I~V~~ 131 (202)
.|..+.+|.++|-|.+..|-..||...+.|..
T Consensus 296 ~~~~~~pG~w~~hch~~~h~~~Gm~~~~~V~~ 327 (647)
T 1sdd_B 296 EMKASKPGWWLLDTEVGEIQRAGMQTPFLIVD 327 (647)
T ss_dssp EEECCSSEEEEEECCCHHHHTTTCEEEEEEEC
T ss_pred EEEeccceEeecccCcccccccccccceeeec
Confidence 56678899999999999999999999999964
No 85
>3g5w_A Multicopper oxidase type 1; two domain, laccase, nitrifier, metal B protein; 1.90A {Nitrosomonas europaea}
Probab=32.56 E-value=41 Score=28.67 Aligned_cols=34 Identities=15% Similarity=0.123 Sum_probs=28.2
Q ss_pred EEEeCCCCcEEEEcCCCCCCC------CCCeEEEEecCCC
Q 040203 100 NITLDSAGEHYYICTFGWHCQ------AGQKLAITVSATP 133 (202)
Q Consensus 100 ~v~L~~~G~~YFiC~v~~HC~------~GmKl~I~V~~~~ 133 (202)
.|..+.+|.+.|-|-+..|-. .||...|.|...+
T Consensus 239 ~~~a~~pG~w~~hCH~~~H~~~g~~~~~Gm~~~i~~~g~~ 278 (318)
T 3g5w_A 239 ILNMDNPGLWMIHDHVDTHTTNGDKPDGGIMTTIEYEEVG 278 (318)
T ss_dssp EEECCSCSEEEEEESSGGGSCBTTBSSCBSEEEEEETTTC
T ss_pred EEECCCCeeEEEEeccHHHhhccCcCCCCCEEEEEECCCC
Confidence 666788999999999999998 5777888887654
No 86
>2bw4_A Copper-containing nitrite reductase; oxidoreductase, denitrification, catalysis, enzyme mechanism, nitrate assimilation; 0.90A {Achromobacter cycloclastes} SCOP: b.6.1.3 b.6.1.3 PDB: 1nib_A 1nia_A 1nid_A 1nie_A 1nic_A 1nif_A 2bw5_A 2bwd_A 2bwi_A 2nrd_A 2y1a_A 1kcb_A 1rzp_A* 1rzq_A 2avf_A 1as6_A 1aq8_A 1as7_A 1as8_A 2afn_A ...
Probab=32.28 E-value=39 Score=28.69 Aligned_cols=33 Identities=15% Similarity=0.071 Sum_probs=27.4
Q ss_pred EEEeCCCCcEEEEcCCCC-CCCCCCeEEEEecCC
Q 040203 100 NITLDSAGEHYYICTFGW-HCQAGQKLAITVSAT 132 (202)
Q Consensus 100 ~v~L~~~G~~YFiC~v~~-HC~~GmKl~I~V~~~ 132 (202)
.|..+++|.|+|.|.... |=..||.-.|.|...
T Consensus 292 ~v~~~~pG~y~~~~h~~~~h~~~Gm~~~~~V~~~ 325 (340)
T 2bw4_A 292 FYTFRQPGVYAYVNHNLIEAFELGAAGHFKVTGE 325 (340)
T ss_dssp EEECCSCEEEEEEESSHHHHHTTSCEEEEEEESC
T ss_pred EEECCCCeeeEEEcCchHHHHhCCCEEEEEECCC
Confidence 567788999999999873 658899888999864
No 87
>2j5w_A Ceruloplasmin, ferroxidase; oxidoreductase, plasma protein, copper transport, copper, transport, polymorphism, glycoprotein, multi-copper oxidase; HET: NAG; 2.80A {Homo sapiens} SCOP: b.6.1.3 b.6.1.3 b.6.1.3 b.6.1.3 b.6.1.3 PDB: 1kcw_A*
Probab=31.89 E-value=20 Score=35.97 Aligned_cols=76 Identities=16% Similarity=0.151 Sum_probs=51.8
Q ss_pred CCceEeCCEEEEeecC-----CCceEEEec------ccCCCCCCCCCCCCCCccCCCcEEEeCCCCcEEEEcCCCCCCCC
Q 040203 53 TKNFVVGDVLTFNFVT-----NEHDVLRVP------KASYDGCTSSNPIGNPITTGPTNITLDSAGEHYYICTFGWHCQA 121 (202)
Q Consensus 53 ~~tF~vGD~LvF~y~~-----~~H~V~~V~------~~~Y~~C~~s~~~~~~~s~G~~~v~L~~~G~~YFiC~v~~HC~~ 121 (202)
...+..||.|+.+... ..|+|.+-. ...++.|...-.. +-...++.+.+|++|+-|.+..|=..
T Consensus 633 ~l~~~~gd~v~~~v~~~g~~~~~Hgl~~~g~t~~~dG~~~~t~~i~pg~-----~~t~~~~~~~~Gt~~~h~h~~~~~~~ 707 (1065)
T 2j5w_A 633 GLTMCKGDSVVWYLFSAGNEADVHGIYFSGNTYLWRGERRDTANLFPQT-----SLTLHMWPDTEGTFNVECLTTDHYTG 707 (1065)
T ss_dssp CCEEETTCCEEEEEECCCSTTCCEEEEETTCCEEETTEEESEEEECTTC-----EEEEEECCCSCEEEEEEECSHHHHHT
T ss_pred ceEEeCCCEEEEEEEcCCCcceEEeeEEeCCceeecCeecceEeecCCc-----eEEEEEecCCCeEEEEecCCCcccCC
Confidence 5689999999887653 247775532 1224445432211 12246667789999999999999999
Q ss_pred CCeEEEEecCCC
Q 040203 122 GQKLAITVSATP 133 (202)
Q Consensus 122 GmKl~I~V~~~~ 133 (202)
||+..+.|....
T Consensus 708 Gm~g~~~V~~~~ 719 (1065)
T 2j5w_A 708 GMKQKYTVNQCR 719 (1065)
T ss_dssp TCEEEEEEECCS
T ss_pred CcEEEEEEcCCc
Confidence 999999997643
No 88
>3pxl_A Laccase; 4-copper protein, metal-binding, oxidoreductase, type-2 Cu-D; HET: NAG BMA MAN; 1.20A {Trametes hirsuta} PDB: 3fpx_A* 3v9c_A* 3div_A* 2h5u_A* 2xyb_A* 1kya_A* 1gyc_A* 2qt6_A* 2hrg_A* 2hrh_A* 4a2f_A* 2vdz_A* 4a2d_A* 4a2e_A* 4a2g_A* 4a2h_A* 2ve0_A* 2vds_A* 2hzh_A* 3kw7_A*
Probab=29.48 E-value=60 Score=29.66 Aligned_cols=34 Identities=18% Similarity=0.297 Sum_probs=28.2
Q ss_pred EEEe-CCCCcEEEEcCCCCCCCCCCeEEEEecCCC
Q 040203 100 NITL-DSAGEHYYICTFGWHCQAGQKLAITVSATP 133 (202)
Q Consensus 100 ~v~L-~~~G~~YFiC~v~~HC~~GmKl~I~V~~~~ 133 (202)
.|++ +++|+|||-|....|=..||.-.|.|..+.
T Consensus 96 ~f~~~~~~GT~wYHsH~~~q~~~GL~G~lIV~~~~ 130 (499)
T 3pxl_A 96 DFQVPDQAGTFWYHSHLSTQYCDGLRGPFVVYDPN 130 (499)
T ss_dssp EEECSSCCEEEEEEECSTTGGGGTCEEEEEEECTT
T ss_pred EEEcCCCCceeeeeccchhHHhccceeEEEEcCCc
Confidence 6777 679999999998877778999899887643
No 89
>2dv6_A Nitrite reductase; electron transfer, reduction, denitrification, oxidoreductase; 2.20A {Hyphomicrobium denitrificans}
Probab=29.31 E-value=37 Score=29.87 Aligned_cols=34 Identities=15% Similarity=0.105 Sum_probs=29.1
Q ss_pred EEEeCCCCcEEEEcCCCCCCCCCCeEEEEecCCC
Q 040203 100 NITLDSAGEHYYICTFGWHCQAGQKLAITVSATP 133 (202)
Q Consensus 100 ~v~L~~~G~~YFiC~v~~HC~~GmKl~I~V~~~~ 133 (202)
.|..+.+|.++|-|....|=..||...|.|...+
T Consensus 402 ~~~~~~pG~~~~hch~~~h~~~Gm~~~~~v~~~~ 435 (447)
T 2dv6_A 402 DFKIDRAGRYILVDHALSRLEHGLVGFLNVDGPK 435 (447)
T ss_dssp EEECCSCEEEEEEESSGGGGGGTCCEEEEECSCS
T ss_pred EEECCCCEEEEEEecCcCccccCCEEEEEEeCCC
Confidence 5667889999999999999889999999997643
No 90
>1xne_A Hypothetical protein PF0469; GFT structural genomics, protein structure initiative, NESG, PFR14, alpha and beta protein; NMR {Pyrococcus furiosus} SCOP: b.122.1.6
Probab=28.61 E-value=16 Score=27.39 Aligned_cols=12 Identities=42% Similarity=0.703 Sum_probs=10.3
Q ss_pred CceEeCCEEEEe
Q 040203 54 KNFVVGDVLTFN 65 (202)
Q Consensus 54 ~tF~vGD~LvF~ 65 (202)
+.+++||.|+|+
T Consensus 33 ~~i~vGD~I~f~ 44 (113)
T 1xne_A 33 KDIKRGDKIIFN 44 (113)
T ss_dssp TTCCTTCEEEET
T ss_pred hccCCCCEEEEc
Confidence 378999999994
No 91
>2z0t_A Putative uncharacterized protein PH0355; alpha/beta protein, RNA binding protein, structural genomics, NPPSFA; 1.80A {Pyrococcus horikoshii} PDB: 1s04_A
Probab=28.01 E-value=20 Score=26.72 Aligned_cols=11 Identities=27% Similarity=0.742 Sum_probs=9.8
Q ss_pred CceEeCCEEEE
Q 040203 54 KNFVVGDVLTF 64 (202)
Q Consensus 54 ~tF~vGD~LvF 64 (202)
+.+++||.|+|
T Consensus 32 ~~ikvGD~I~f 42 (109)
T 2z0t_A 32 RQIKPGDIIIF 42 (109)
T ss_dssp GGCCTTCEEEE
T ss_pred hcCCCCCEEEE
Confidence 37899999999
No 92
>2xu9_A Laccase; oxidoreductase, multicopper oxidases; 1.50A {Thermus thermophilus} PDB: 2xuw_A 2xvb_A 2yae_A 2yaf_A 2yah_A 2yam_A 2yao_A 2yap_A 2yaq_A 2yar_A 4ai7_A
Probab=26.80 E-value=88 Score=27.66 Aligned_cols=76 Identities=16% Similarity=0.145 Sum_probs=0.0
Q ss_pred ceEeCCEEEEeecCCCceEEEe-cccCCCCCCCCCCCCCCccCCCc---EEEe--CCCCcEEEEcCCCC----CCCCCCe
Q 040203 55 NFVVGDVLTFNFVTNEHDVLRV-PKASYDGCTSSNPIGNPITTGPT---NITL--DSAGEHYYICTFGW----HCQAGQK 124 (202)
Q Consensus 55 tF~vGD~LvF~y~~~~H~V~~V-~~~~Y~~C~~s~~~~~~~s~G~~---~v~L--~~~G~~YFiC~v~~----HC~~GmK 124 (202)
.++.||+|+.++.+....-..+ ...-.......+.. .....|.. .|++ +.+|+|||-|...+ |=..||.
T Consensus 50 ~~~~Gd~v~v~~~N~l~~~tsiHwHG~~~~~~~DG~~-~~I~PG~~~~Y~f~~~~~~~GT~wYH~H~~~~t~~q~~~Gl~ 128 (439)
T 2xu9_A 50 RVRPRDTVRLTLENRLPEPTNLHWHGLPISPKVDDPF-LEIPPGESWTYEFTVPKELAGTFWYHPHLHGRVAPQLFAGLL 128 (439)
T ss_dssp EECTTCEEEEEEEECSSSCBCCEEETCCCCTTTSCTT-CCBCTTCEEEEEEECCSSCCEEEEEECCCTTSHHHHHHTTCC
T ss_pred EEeCCCEEEEEEEECCCCCcceEeCCCCCCccccCCc-ccCCCCCeEEEEEecCCCCCcceEeccCCCCchHHHHHhhCe
Q ss_pred EEEEecC
Q 040203 125 LAITVSA 131 (202)
Q Consensus 125 l~I~V~~ 131 (202)
-.|.|..
T Consensus 129 G~liV~~ 135 (439)
T 2xu9_A 129 GALVVES 135 (439)
T ss_dssp EEEEECC
T ss_pred EEEEEcC
No 93
>2kbn_A Conserved protein; nucleic acid binding protein, beta barrel, structural genomics, PSI-2, protein structure initiative; NMR {Methanosarcina mazei} PDB: 2ken_A
Probab=26.36 E-value=27 Score=25.35 Aligned_cols=31 Identities=19% Similarity=0.415 Sum_probs=23.2
Q ss_pred EEEecCCCCCCCCCCCCCcchhhhc--cCCceEeCCEEEEe
Q 040203 27 VHVVGDSMGWSIPMSGGAGAYVAWA--ATKNFVVGDVLTFN 65 (202)
Q Consensus 27 ~~~VGg~~GW~~~~~~~~~~Y~~WA--s~~tF~vGD~LvF~ 65 (202)
..++||+.| ...++.|. ....|+.||+|.++
T Consensus 38 ~~~l~DeTG--------~I~~t~W~~~~~~~~~~G~~V~i~ 70 (109)
T 2kbn_A 38 VGLLGDETG--------IIKFTIWKNAELPLLEQGESYLLR 70 (109)
T ss_dssp EEEEECTTC--------CEEEEEEGGGCCCCCCTTCEEEEE
T ss_pred EEEEECCCC--------eEEEEEECcccccccCCCCEEEEE
Confidence 357788877 25577886 34589999999987
No 94
>3nb3_A Outer membrane protein A; virus assembly, cementing protein, bacteriophage, SF6, shige beta-barrel, icosahedral, virus; 19.00A {Escherichia coli}
Probab=26.34 E-value=11 Score=31.93 Aligned_cols=13 Identities=31% Similarity=0.741 Sum_probs=8.0
Q ss_pred eEEEecCCCCCCC
Q 040203 26 TVHVVGDSMGWSI 38 (202)
Q Consensus 26 ~~~~VGg~~GW~~ 38 (202)
..+.||...||..
T Consensus 26 ~~~yvg~~~G~~~ 38 (346)
T 3nb3_A 26 NTWYTGAKLGWSQ 38 (346)
T ss_dssp TEEEEEEEEEEEC
T ss_pred CCceEEEeeeeee
Confidence 3466777666653
No 95
>2j5w_A Ceruloplasmin, ferroxidase; oxidoreductase, plasma protein, copper transport, copper, transport, polymorphism, glycoprotein, multi-copper oxidase; HET: NAG; 2.80A {Homo sapiens} SCOP: b.6.1.3 b.6.1.3 b.6.1.3 b.6.1.3 b.6.1.3 PDB: 1kcw_A*
Probab=26.12 E-value=38 Score=34.00 Aligned_cols=77 Identities=12% Similarity=0.141 Sum_probs=50.4
Q ss_pred CCceEeCCEEEEeecC-C----CceEEEecccCCCCCCCCCCCC---CCccCCC---cEEEeCCCCcEEEEcCCCCCCCC
Q 040203 53 TKNFVVGDVLTFNFVT-N----EHDVLRVPKASYDGCTSSNPIG---NPITTGP---TNITLDSAGEHYYICTFGWHCQA 121 (202)
Q Consensus 53 ~~tF~vGD~LvF~y~~-~----~H~V~~V~~~~Y~~C~~s~~~~---~~~s~G~---~~v~L~~~G~~YFiC~v~~HC~~ 121 (202)
..+++.|++++|++-+ + .|++. +....+. ..+.. .....|. ..|+.+++|.|+|.|....|=..
T Consensus 272 ~l~v~~Ge~vRlRliNag~~~~~~~~~-i~Gh~f~----v~p~~~dtv~I~pGer~dVlv~~~~pG~y~i~~h~~~h~~~ 346 (1065)
T 2j5w_A 272 GLSMCAEDRVKWYLFGMGNEVDVHAAF-FHGQALT----NKNYRIDTINLFPATLFDAYMVAQNPGEWMLSCQNLNHLKA 346 (1065)
T ss_dssp CCEEETTCEEEEEEEECSSTTCCEEEE-ETTCCEE----ETTEEESEEEECBTCEEEEEEECCSCEEEEEEECSHHHHHT
T ss_pred ceEECCCCEEEEEEEcCCcccceeEEE-EcCCEEE----ECCeeecEEEECCCcEEEEEEEeCCCeeEEEEecCcchhhC
Confidence 4588999999998865 2 24333 2222222 11110 1122333 36777889999999999999999
Q ss_pred CCeEEEEecCCCC
Q 040203 122 GQKLAITVSATPG 134 (202)
Q Consensus 122 GmKl~I~V~~~~~ 134 (202)
||...+.|.....
T Consensus 347 Gm~~~~~V~~~~~ 359 (1065)
T 2j5w_A 347 GLQAFFQVQECNK 359 (1065)
T ss_dssp TCEEEEEEECSCC
T ss_pred CCEEEEEEecCCC
Confidence 9999999987544
No 96
>1wid_A DNA-binding protein RAV1; DNA-binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: b.142.1.2
Probab=24.61 E-value=33 Score=25.73 Aligned_cols=18 Identities=33% Similarity=0.536 Sum_probs=15.3
Q ss_pred ccCCceEeCCEEEEeecC
Q 040203 51 AATKNFVVGDVLTFNFVT 68 (202)
Q Consensus 51 As~~tF~vGD~LvF~y~~ 68 (202)
...+.+++||.|+|....
T Consensus 87 V~~~~L~~GD~~~F~~~~ 104 (130)
T 1wid_A 87 VKEKNLRAGDVVSFSRSN 104 (130)
T ss_dssp HHHTTCCTTCEEEEEECC
T ss_pred HHHcCCCCCCEEEEEEec
Confidence 457889999999999875
No 97
>2zwn_A Two-domain type laccase; muticopper oxidase, oxidoreductase; 1.70A {Metagenomes}
Probab=24.10 E-value=79 Score=26.97 Aligned_cols=33 Identities=18% Similarity=0.219 Sum_probs=26.6
Q ss_pred EEEeCCCCcEEEEcCCCCCCC------CCCeEEEEecCC
Q 040203 100 NITLDSAGEHYYICTFGWHCQ------AGQKLAITVSAT 132 (202)
Q Consensus 100 ~v~L~~~G~~YFiC~v~~HC~------~GmKl~I~V~~~ 132 (202)
.|+.+.+|.++|-|....||. .||...|.+...
T Consensus 240 ~~~~~~pG~w~~hch~~~H~~~~~~~~~gm~a~l~~~g~ 278 (339)
T 2zwn_A 240 IIEADNPGRFIFHDHVDTHVTAGGKHPGGPITVIEYDGV 278 (339)
T ss_dssp EEECCSCSEEEEEECCGGGSCBTTBSSCSSEEEEEETTS
T ss_pred EEEeCCCeeEEEEEechhhcccccccCCCcEEEEEECCC
Confidence 667788999999999999963 678788888654
No 98
>2k75_A Uncharacterized protein TA0387; closed beta barrel, OB fold, structural genomics, PSI-2, protein structure initiative; NMR {Thermoplasma acidophilum}
Probab=23.34 E-value=24 Score=25.52 Aligned_cols=29 Identities=10% Similarity=0.141 Sum_probs=23.2
Q ss_pred EEEecCCCCCCCCCCCCCcchhhhccCCceEeCCEEEEe
Q 040203 27 VHVVGDSMGWSIPMSGGAGAYVAWAATKNFVVGDVLTFN 65 (202)
Q Consensus 27 ~~~VGg~~GW~~~~~~~~~~Y~~WAs~~tF~vGD~LvF~ 65 (202)
+.+|||+.| . ..++.|-.. |+.||+|.++
T Consensus 41 ~~~l~DeTG-~-------I~~tlW~~~--l~~Gdvv~i~ 69 (106)
T 2k75_A 41 QGYIEDDTA-R-------IRISSFGKQ--LQDSDVVRID 69 (106)
T ss_dssp EEEEECSSC-E-------EEEEEESSC--CCTTEEEEEE
T ss_pred EEEEEcCCC-e-------EEEEEEcCc--cCCCCEEEEE
Confidence 567888887 2 557888776 9999999987
No 99
>2l55_A SILB,silver efflux protein, MFP component of the components proton antiporter metal...; APO form, AG(I)-binding site; NMR {Cupriavidus metallidurans}
Probab=22.98 E-value=33 Score=23.94 Aligned_cols=17 Identities=24% Similarity=0.481 Sum_probs=14.3
Q ss_pred cCCceEeCCEEEEeecC
Q 040203 52 ATKNFVVGDVLTFNFVT 68 (202)
Q Consensus 52 s~~tF~vGD~LvF~y~~ 68 (202)
.-..+++||.|.|.+..
T Consensus 44 ~l~~lk~Gd~V~F~~~~ 60 (82)
T 2l55_A 44 LPQGLKAGDRVAFSFRL 60 (82)
T ss_dssp CCSSCSTTCEEEEEEEE
T ss_pred HhhcCCCCCEEEEEEEE
Confidence 34589999999999975
No 100
>1hfu_A Laccase 1; oxidoreductase, blue multi-copper oxidase, type-2 copper depleted, signal, glycoprotein; HET: MAN NAG NDG; 1.68A {Coprinus cinereus} SCOP: b.6.1.3 b.6.1.3 b.6.1.3 PDB: 1a65_A*
Probab=21.99 E-value=1.2e+02 Score=27.33 Aligned_cols=82 Identities=16% Similarity=0.171 Sum_probs=0.0
Q ss_pred ceEeCCEEEEeecCCC-------------ceEEEecccCCCCCCCCCCCCCCccCCCcEEEeC---CCCcEEEEcCCCCC
Q 040203 55 NFVVGDVLTFNFVTNE-------------HDVLRVPKASYDGCTSSNPIGNPITTGPTNITLD---SAGEHYYICTFGWH 118 (202)
Q Consensus 55 tF~vGD~LvF~y~~~~-------------H~V~~V~~~~Y~~C~~s~~~~~~~s~G~~~v~L~---~~G~~YFiC~v~~H 118 (202)
.++.||.|+.++.+.. |.+.+-.....|.=-.-.-- .+.-.+..+..+. ++|+|||=|....|
T Consensus 37 ~~~~Gd~v~v~v~N~l~~~~~~~~tsiHwHG~~~~~~~~~DGv~~vtq~-~I~PG~~~~Y~f~~~~~~GT~wYH~H~~~q 115 (503)
T 1hfu_A 37 RGGKNDNFELNVVNDLDNPTMLRPTSIHWHGLFQRGTNWADGADGVNQC-PISPGHAFLYKFTPAGHAGTFWYHSHFGTQ 115 (503)
T ss_dssp EEETTCCEEEEEEECCCCTTSCCSBCEEEETCCCTTCGGGSCCBTTTBC-CBCTTCEEEEEECCTTCCEEEEEEECSTTG
T ss_pred EEeCCCEEEEEEEeCCCCccCCCcccEeccceeccCCCccCCCcccccC-CcCCCCeEEEEEEeCCCCccEEEEecchhh
Q ss_pred CCCCCeEEEEecCCCCCCC
Q 040203 119 CQAGQKLAITVSATPGSSP 137 (202)
Q Consensus 119 C~~GmKl~I~V~~~~~~sp 137 (202)
=..||--.+.|..+....+
T Consensus 116 ~~~Gl~G~liV~~~~~~~~ 134 (503)
T 1hfu_A 116 YCDGLRGPMVIYDDNDPHA 134 (503)
T ss_dssp GGGTCEEEEEEECTTCTTG
T ss_pred hhCcceeeEEEcCCCCCcc
No 101
>2qcp_X Cation efflux system protein CUSF; silver-binding, copper-binding, beta barrel, OB-fold, metall metal resistance, metal-binding; 1.00A {Escherichia coli str} PDB: 1zeq_X 3e6z_X
Probab=21.56 E-value=48 Score=22.92 Aligned_cols=16 Identities=38% Similarity=0.686 Sum_probs=13.6
Q ss_pred CCceEeCCEEEEeecC
Q 040203 53 TKNFVVGDVLTFNFVT 68 (202)
Q Consensus 53 ~~tF~vGD~LvF~y~~ 68 (202)
-..|++||.|.|.|..
T Consensus 51 l~~lk~Gd~V~F~~~~ 66 (80)
T 2qcp_X 51 MSEIKTGDKVAFNFVQ 66 (80)
T ss_dssp ECCCCTTCEEEEEEEE
T ss_pred hhcCCCCCEEEEEEEE
Confidence 3579999999999974
No 102
>2vb2_X Copper protein, cation efflux system protein CUSF; cation PI, metal-binding, metal transport, copper tolerance, transport; 1.70A {Escherichia coli} PDB: 2vb3_X
Probab=21.04 E-value=49 Score=23.32 Aligned_cols=19 Identities=32% Similarity=0.534 Sum_probs=14.9
Q ss_pred hccCCceEeCCEEEEeecC
Q 040203 50 WAATKNFVVGDVLTFNFVT 68 (202)
Q Consensus 50 WAs~~tF~vGD~LvF~y~~ 68 (202)
.+.-..|++||.|.|.|..
T Consensus 56 ~~~l~~lk~Gd~V~F~~~~ 74 (88)
T 2vb2_X 56 QTKMSEIKTGDKVAFNFVQ 74 (88)
T ss_dssp TCEECCCCTTCEEEEEEEE
T ss_pred hhhhhcCCCCCEEEEEEEE
Confidence 3334589999999999974
No 103
>2uxt_A Protein SUFI, SUFI; oxidoreductase, periplasmic, cupredoxin-like, FTS mutant suppressor; 1.90A {Escherichia coli} PDB: 2uxv_A
Probab=20.56 E-value=47 Score=29.74 Aligned_cols=72 Identities=10% Similarity=-0.017 Sum_probs=0.0
Q ss_pred ceEeCCEEEEeecCCC--------ceEEEecccC-CCCCCCCCCCCCCccCCCcEEEeCC-CCcEEEEcCC----CCCCC
Q 040203 55 NFVVGDVLTFNFVTNE--------HDVLRVPKAS-YDGCTSSNPIGNPITTGPTNITLDS-AGEHYYICTF----GWHCQ 120 (202)
Q Consensus 55 tF~vGD~LvF~y~~~~--------H~V~~V~~~~-Y~~C~~s~~~~~~~s~G~~~v~L~~-~G~~YFiC~v----~~HC~ 120 (202)
.++.||.|++++.+.. |-+.+-...+ ...|-..-.- +=...|++++ +|+|||=|.. ..|=.
T Consensus 53 ~~~~Gd~v~v~~~N~l~~~tsiHwHG~~~~~~~DG~~~~~i~PG~-----~~~Y~f~~~~~~GT~wYH~H~~~~t~~q~~ 127 (451)
T 2uxt_A 53 RVWKGDDVKLIYSNRLTENVSMTVAGLQVPGPLMGGPARMMSPNA-----DWAPVLPIRQNAATLWYHANTPNRTAQQVY 127 (451)
T ss_dssp EEETTCEEEEEEEECSSSCBCEEEETCCCCGGGSCSGGGCBCTTC-----EECCEEECCSCSEEEEEEECCTTTHHHHHH
T ss_pred EEeCCCEEEEEEEECCCCCccEEECCccCCCCCCCCCcCcCCCCC-----eEEEEEEcCCCCcceEEecCCCCchhhhHh
Q ss_pred CCCeEEEEecC
Q 040203 121 AGQKLAITVSA 131 (202)
Q Consensus 121 ~GmKl~I~V~~ 131 (202)
.||--.+.|..
T Consensus 128 ~Gl~G~liV~~ 138 (451)
T 2uxt_A 128 NGLAGMWLVED 138 (451)
T ss_dssp TTCEEEEEEEC
T ss_pred hcceEEEEEec
No 104
>1ac0_A Glucoamylase; hydrolase, starch binding domain; HET: GLC BGC GLO; NMR {Aspergillus niger} SCOP: b.3.1.1 PDB: 1acz_A* 1kul_A 1kum_A
Probab=20.50 E-value=22 Score=25.54 Aligned_cols=43 Identities=23% Similarity=0.606 Sum_probs=28.8
Q ss_pred ceEEEecCC--CC-CCCCC--CCCCcch----hhhccCCceEeCCEEEEeec
Q 040203 25 QTVHVVGDS--MG-WSIPM--SGGAGAY----VAWAATKNFVVGDVLTFNFV 67 (202)
Q Consensus 25 a~~~~VGg~--~G-W~~~~--~~~~~~Y----~~WAs~~tF~vGD~LvF~y~ 67 (202)
...|+||+. .| |.... +-....| ..|.....+..|..|.|+|-
T Consensus 21 e~v~vvGs~~~LG~W~~~~a~~l~~~~~~~~~~~W~~~v~lp~~~~~eYKy~ 72 (108)
T 1ac0_A 21 ENIYLVGSISQLGDWETSDGIALSADKYTSSDPLWYVTVTLPAGESFEYKFI 72 (108)
T ss_dssp CCEECCCSSSTTCSSSGGGSCCBBCSSSSSSCSSCEEEECCCSSSCEECCCE
T ss_pred CEEEEEeCcHHHCCCCHHHCccccccccCCcCCeEEEEEEeCCCCeEEEEEE
Confidence 457889973 44 98531 1122333 78988888888888888884
Done!