BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 040204
(97 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3B08|A Chain A, Crystal Structure Of The Mouse Hoil1-L-Nzf In Complex With
Linear Di- Ubiquitin
pdb|3B08|D Chain D, Crystal Structure Of The Mouse Hoil1-L-Nzf In Complex With
Linear Di- Ubiquitin
pdb|3B08|G Chain G, Crystal Structure Of The Mouse Hoil1-L-Nzf In Complex With
Linear Di- Ubiquitin
pdb|3B08|J Chain J, Crystal Structure Of The Mouse Hoil1-L-Nzf In Complex With
Linear Di- Ubiquitin
pdb|3B0A|A Chain A, Crystal Structure Of The Mouse Hoil1-L-Nzf In Complex With
Linear Di- Ubiquitin
pdb|3B0A|D Chain D, Crystal Structure Of The Mouse Hoil1-L-Nzf In Complex With
Linear Di- Ubiquitin
Length = 152
Score = 111 bits (278), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 62/93 (66%), Positives = 66/93 (70%), Gaps = 13/93 (13%)
Query: 1 IEDKEEILRDQQRFIFAGKRLEDGRTLVDYNIHG-STLHSVRRFRGGMQIF--------- 50
I+DKE I DQQR IFAGK+LEDGRTL DYNI STLH V R RGGMQIF
Sbjct: 30 IQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTI 89
Query: 51 ---VESSDTIDNVKAKIQDKKGTPPDQQRQIFW 80
VE SDTI+NVKAKIQDK+G PPDQQR IF
Sbjct: 90 TLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFA 122
Score = 64.7 bits (156), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 34/47 (72%), Positives = 36/47 (76%), Gaps = 1/47 (2%)
Query: 1 IEDKEEILRDQQRFIFAGKRLEDGRTLVDYNIHG-STLHSVRRFRGG 46
I+DKE I DQQR IFAGK+LEDGRTL DYNI STLH V R RGG
Sbjct: 106 IQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 152
Score = 52.4 bits (124), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 24/30 (80%), Positives = 26/30 (86%)
Query: 51 VESSDTIDNVKAKIQDKKGTPPDQQRQIFW 80
VE SDTI+NVKAKIQDK+G PPDQQR IF
Sbjct: 17 VEPSDTIENVKAKIQDKEGIPPDQQRLIFA 46
>pdb|2ZVN|A Chain A, Nemo Cozi Domain Incomplex With Diubiquitin In P212121
Space Group
pdb|2ZVN|G Chain G, Nemo Cozi Domain Incomplex With Diubiquitin In P212121
Space Group
pdb|2ZVN|C Chain C, Nemo Cozi Domain Incomplex With Diubiquitin In P212121
Space Group
pdb|2ZVN|E Chain E, Nemo Cozi Domain Incomplex With Diubiquitin In P212121
Space Group
pdb|2ZVO|A Chain A, Nemo Cozi Domain In Complex With Diubiquitin In C2 Space
Group
pdb|2ZVO|G Chain G, Nemo Cozi Domain In Complex With Diubiquitin In C2 Space
Group
pdb|3AXC|A Chain A, Crystal Structure Of Linear Diubiquitin
Length = 154
Score = 111 bits (278), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 62/93 (66%), Positives = 66/93 (70%), Gaps = 13/93 (13%)
Query: 1 IEDKEEILRDQQRFIFAGKRLEDGRTLVDYNIHG-STLHSVRRFRGGMQIF--------- 50
I+DKE I DQQR IFAGK+LEDGRTL DYNI STLH V R RGGMQIF
Sbjct: 32 IQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTI 91
Query: 51 ---VESSDTIDNVKAKIQDKKGTPPDQQRQIFW 80
VE SDTI+NVKAKIQDK+G PPDQQR IF
Sbjct: 92 TLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFA 124
Score = 64.7 bits (156), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 34/47 (72%), Positives = 36/47 (76%), Gaps = 1/47 (2%)
Query: 1 IEDKEEILRDQQRFIFAGKRLEDGRTLVDYNIHG-STLHSVRRFRGG 46
I+DKE I DQQR IFAGK+LEDGRTL DYNI STLH V R RGG
Sbjct: 108 IQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 154
Score = 53.9 bits (128), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 29/48 (60%), Positives = 31/48 (64%), Gaps = 12/48 (25%)
Query: 45 GGMQIFV------------ESSDTIDNVKAKIQDKKGTPPDQQRQIFW 80
G MQIFV E SDTI+NVKAKIQDK+G PPDQQR IF
Sbjct: 1 GSMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFA 48
>pdb|3U30|A Chain A, Crystal Structure Of A Linear-Specific Ubiquitin Fab Bound
To Linear Ubiquitin
pdb|3U30|D Chain D, Crystal Structure Of A Linear-Specific Ubiquitin Fab Bound
To Linear Ubiquitin
Length = 172
Score = 111 bits (278), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 62/93 (66%), Positives = 66/93 (70%), Gaps = 13/93 (13%)
Query: 1 IEDKEEILRDQQRFIFAGKRLEDGRTLVDYNIHG-STLHSVRRFRGGMQIF--------- 50
I+DKE I DQQR IFAGK+LEDGRTL DYNI STLH V R RGGMQIF
Sbjct: 50 IQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTI 109
Query: 51 ---VESSDTIDNVKAKIQDKKGTPPDQQRQIFW 80
VE SDTI+NVKAKIQDK+G PPDQQR IF
Sbjct: 110 TLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFA 142
Score = 64.7 bits (156), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 34/47 (72%), Positives = 36/47 (76%), Gaps = 1/47 (2%)
Query: 1 IEDKEEILRDQQRFIFAGKRLEDGRTLVDYNIHG-STLHSVRRFRGG 46
I+DKE I DQQR IFAGK+LEDGRTL DYNI STLH V R RGG
Sbjct: 126 IQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 172
Score = 52.4 bits (124), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 24/30 (80%), Positives = 26/30 (86%)
Query: 51 VESSDTIDNVKAKIQDKKGTPPDQQRQIFW 80
VE SDTI+NVKAKIQDK+G PPDQQR IF
Sbjct: 37 VEPSDTIENVKAKIQDKEGIPPDQQRLIFA 66
>pdb|2W9N|A Chain A, Crystal Structure Of Linear Di-Ubiquitin
Length = 152
Score = 111 bits (278), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 62/93 (66%), Positives = 66/93 (70%), Gaps = 13/93 (13%)
Query: 1 IEDKEEILRDQQRFIFAGKRLEDGRTLVDYNIHG-STLHSVRRFRGGMQIF--------- 50
I+DKE I DQQR IFAGK+LEDGRTL DYNI STLH V R RGGMQIF
Sbjct: 30 IQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTI 89
Query: 51 ---VESSDTIDNVKAKIQDKKGTPPDQQRQIFW 80
VE SDTI+NVKAKIQDK+G PPDQQR IF
Sbjct: 90 TLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFA 122
Score = 64.7 bits (156), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 34/47 (72%), Positives = 36/47 (76%), Gaps = 1/47 (2%)
Query: 1 IEDKEEILRDQQRFIFAGKRLEDGRTLVDYNIHG-STLHSVRRFRGG 46
I+DKE I DQQR IFAGK+LEDGRTL DYNI STLH V R RGG
Sbjct: 106 IQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 152
Score = 52.0 bits (123), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 24/30 (80%), Positives = 26/30 (86%)
Query: 51 VESSDTIDNVKAKIQDKKGTPPDQQRQIFW 80
VE SDTI+NVKAKIQDK+G PPDQQR IF
Sbjct: 17 VEPSDTIENVKAKIQDKEGIPPDQQRLIFA 46
>pdb|2Y5B|B Chain B, Structure Of Usp21 In Complex With Linear
Diubiquitin-Aldehyde
pdb|2Y5B|F Chain F, Structure Of Usp21 In Complex With Linear
Diubiquitin-Aldehyde
Length = 152
Score = 108 bits (270), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 61/93 (65%), Positives = 65/93 (69%), Gaps = 13/93 (13%)
Query: 1 IEDKEEILRDQQRFIFAGKRLEDGRTLVDYNIHG-STLHSVRRFRGGMQIF--------- 50
I+DKE I DQQR IFAGK+LEDGRTL DYNI STLH V R RG MQIF
Sbjct: 30 IQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGHMQIFVKTLTGKTI 89
Query: 51 ---VESSDTIDNVKAKIQDKKGTPPDQQRQIFW 80
VE SDTI+NVKAKIQDK+G PPDQQR IF
Sbjct: 90 TLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFA 122
Score = 62.4 bits (150), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 33/46 (71%), Positives = 35/46 (76%), Gaps = 1/46 (2%)
Query: 1 IEDKEEILRDQQRFIFAGKRLEDGRTLVDYNIHG-STLHSVRRFRG 45
I+DKE I DQQR IFAGK+LEDGRTL DYNI STLH V R RG
Sbjct: 106 IQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRG 151
Score = 52.4 bits (124), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 24/30 (80%), Positives = 26/30 (86%)
Query: 51 VESSDTIDNVKAKIQDKKGTPPDQQRQIFW 80
VE SDTI+NVKAKIQDK+G PPDQQR IF
Sbjct: 17 VEPSDTIENVKAKIQDKEGIPPDQQRLIFA 46
>pdb|3Q3F|A Chain A, Engineering Domain-Swapped Binding Interfaces By Mutually
Exclusive Folding: Insertion Of Ubiquitin Into Position
103 Of Barnase
Length = 189
Score = 67.4 bits (163), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 36/53 (67%), Positives = 39/53 (73%), Gaps = 1/53 (1%)
Query: 1 IEDKEEILRDQQRFIFAGKRLEDGRTLVDYNIHG-STLHSVRRFRGGMQIFVE 52
I+DKE I DQQR IFAGK+LEDGRTL DYNI STLH V R RGG Q F +
Sbjct: 135 IQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGGQTFTK 187
Score = 51.6 bits (122), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 24/29 (82%), Positives = 26/29 (89%)
Query: 51 VESSDTIDNVKAKIQDKKGTPPDQQRQIF 79
VE SDTI+NVKAKIQDK+G PPDQQR IF
Sbjct: 122 VEPSDTIENVKAKIQDKEGIPPDQQRLIF 150
>pdb|2JWZ|A Chain A, Mutations In The Hydrophobic Core Of Ubiquitin
Differentially Affect Its Recognition By Receptor
Proteins
Length = 76
Score = 67.4 bits (163), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 35/47 (74%), Positives = 37/47 (78%), Gaps = 1/47 (2%)
Query: 1 IEDKEEILRDQQRFIFAGKRLEDGRTLVDYNIHG-STLHSVRRFRGG 46
I+DKE I DQQR IFAGK+LEDGRTL DYNI STLHSV R RGG
Sbjct: 30 IQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHSVLRLRGG 76
Score = 54.3 bits (129), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 25/29 (86%), Positives = 27/29 (93%)
Query: 51 VESSDTIDNVKAKIQDKKGTPPDQQRQIF 79
VESSDTIDNVK+KIQDK+G PPDQQR IF
Sbjct: 17 VESSDTIDNVKSKIQDKEGIPPDQQRLIF 45
>pdb|1YX5|B Chain B, Solution Structure Of S5a Uim-1UBIQUITIN COMPLEX
pdb|1YX6|B Chain B, Solution Structure Of S5a Uim-2UBIQUITIN COMPLEX
Length = 98
Score = 66.6 bits (161), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 37/66 (56%), Positives = 45/66 (68%), Gaps = 4/66 (6%)
Query: 1 IEDKEEILRDQQRFIFAGKRLEDGRTLVDYNIHG-STLHSVRRFRGGMQIFVESSDTIDN 59
I+DKE I DQQR IFAGK+LEDGRTL DYNI STLH V R RGG +S ++D
Sbjct: 30 IQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGRD---PNSSSVDK 86
Query: 60 VKAKIQ 65
+ A ++
Sbjct: 87 LAAALE 92
Score = 52.4 bits (124), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 24/30 (80%), Positives = 26/30 (86%)
Query: 51 VESSDTIDNVKAKIQDKKGTPPDQQRQIFW 80
VE SDTI+NVKAKIQDK+G PPDQQR IF
Sbjct: 17 VEPSDTIENVKAKIQDKEGIPPDQQRLIFA 46
>pdb|2FCS|A Chain A, X-Ray Crystal Structure Of A Chemically Synthesized
[l-Gln35]ubiquitin With A Cubic Space Group
pdb|2FCS|B Chain B, X-Ray Crystal Structure Of A Chemically Synthesized
[l-Gln35]ubiquitin With A Cubic Space Group
Length = 76
Score = 66.6 bits (161), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 34/47 (72%), Positives = 37/47 (78%), Gaps = 1/47 (2%)
Query: 1 IEDKEEILRDQQRFIFAGKRLEDGRTLVDYNIHG-STLHSVRRFRGG 46
I+DKE+I DQQR IFAGK+LEDGRTL DYNI STLH V R RGG
Sbjct: 30 IQDKEQIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76
Score = 48.9 bits (115), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 23/29 (79%), Positives = 25/29 (86%)
Query: 51 VESSDTIDNVKAKIQDKKGTPPDQQRQIF 79
VE SDTI+NVKAKIQDK+ PPDQQR IF
Sbjct: 17 VEPSDTIENVKAKIQDKEQIPPDQQRLIF 45
>pdb|3U5E|MM Chain m, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 60s
Subunit, Ribosome A
pdb|3U5I|MM Chain m, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 60s
Subunit, Ribosome B
pdb|4B6A|MM Chain m, Cryo-Em Structure Of The 60s Ribosomal Subunit In
Complex With Arx1 And Rei1
Length = 128
Score = 66.2 bits (160), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 34/48 (70%), Positives = 37/48 (77%), Gaps = 1/48 (2%)
Query: 1 IEDKEEILRDQQRFIFAGKRLEDGRTLVDYNIHG-STLHSVRRFRGGM 47
I+DKE I DQQR IFAGK+LEDGRTL DYNI STLH V R RGG+
Sbjct: 30 IQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGI 77
Score = 54.7 bits (130), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 25/29 (86%), Positives = 27/29 (93%)
Query: 51 VESSDTIDNVKAKIQDKKGTPPDQQRQIF 79
VESSDTIDNVK+KIQDK+G PPDQQR IF
Sbjct: 17 VESSDTIDNVKSKIQDKEGIPPDQQRLIF 45
>pdb|2ZCB|A Chain A, Crystal Structure Of Ubiquitin P37aP38A
pdb|2ZCB|B Chain B, Crystal Structure Of Ubiquitin P37aP38A
pdb|2ZCB|C Chain C, Crystal Structure Of Ubiquitin P37aP38A
Length = 76
Score = 65.9 bits (159), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 34/47 (72%), Positives = 36/47 (76%), Gaps = 1/47 (2%)
Query: 1 IEDKEEILRDQQRFIFAGKRLEDGRTLVDYNIHG-STLHSVRRFRGG 46
I+DKE I DQQR IFAGK+LEDGRTL DYNI STLH V R RGG
Sbjct: 30 IQDKEGIAADQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76
Score = 46.2 bits (108), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 22/29 (75%), Positives = 24/29 (82%)
Query: 51 VESSDTIDNVKAKIQDKKGTPPDQQRQIF 79
VE SDTI+NVKAKIQDK+G DQQR IF
Sbjct: 17 VEPSDTIENVKAKIQDKEGIAADQQRLIF 45
>pdb|4A18|K Chain K, T.Thermophila 60s Ribosomal Subunit In Complex With
Initiation Factor 6. This File Contains 26s Rrna And
Proteins Of Molecule 1
pdb|4A1B|K Chain K, T.Thermophila 60s Ribosomal Subunit In Complex With
Initiation Factor 6. This File Contains 26s Rrna And
Proteins Of Molecule 3.
pdb|4A1D|K Chain K, T.Thermophila 60s Ribosomal Subunit In Complex With
Initiation Factor 6. This File Contains 26s Rrna And
Proteins Of Molecule 4.
pdb|4A19|K Chain K, T.Thermophila 60s Ribosomal Subunit In Complex With
Initiation Factor 6. This File Contains 26s Rrna And
Proteins Of Molecule 2.
pdb|4ADX|5 Chain 5, The Cryo-Em Structure Of The Archaeal 50s Ribosomal
Subunit In Complex With Initiation Factor 6
Length = 129
Score = 65.5 bits (158), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 34/47 (72%), Positives = 36/47 (76%), Gaps = 1/47 (2%)
Query: 1 IEDKEEILRDQQRFIFAGKRLEDGRTLVDYNIHG-STLHSVRRFRGG 46
I+DKE I DQQR IFAGK+LEDGRTL DYNI STLH V R RGG
Sbjct: 30 IQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76
Score = 53.5 bits (127), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 24/30 (80%), Positives = 27/30 (90%)
Query: 51 VESSDTIDNVKAKIQDKKGTPPDQQRQIFW 80
VE+SDTI+NVKAKIQDK+G PPDQQR IF
Sbjct: 17 VEASDTIENVKAKIQDKEGIPPDQQRLIFA 46
>pdb|1YJ1|A Chain A, X-Ray Crystal Structure Of A Chemically Synthesized
[d-Gln35]ubiquitin
pdb|1YJ1|B Chain B, X-Ray Crystal Structure Of A Chemically Synthesized
[d-Gln35]ubiquitin
pdb|1YJ1|C Chain C, X-Ray Crystal Structure Of A Chemically Synthesized
[d-Gln35]ubiquitin
pdb|2FCM|A Chain A, X-Ray Crystal Structure Of A Chemically Synthesized
[d-Gln35]ubiquitin With A Cubic Space Group
pdb|2FCM|B Chain B, X-Ray Crystal Structure Of A Chemically Synthesized
[d-Gln35]ubiquitin With A Cubic Space Group
pdb|2FCN|A Chain A, X-Ray Crystal Structure Of A Chemically Synthesized
[d-Val35]ubiquitin With A Cubic Space Group
pdb|2FCN|B Chain B, X-Ray Crystal Structure Of A Chemically Synthesized
[d-Val35]ubiquitin With A Cubic Space Group
Length = 76
Score = 65.5 bits (158), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 34/47 (72%), Positives = 36/47 (76%), Gaps = 1/47 (2%)
Query: 1 IEDKEEILRDQQRFIFAGKRLEDGRTLVDYNIHG-STLHSVRRFRGG 46
I+DKE I DQQR IFAGK+LEDGRTL DYNI STLH V R RGG
Sbjct: 30 IQDKEXIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76
Score = 49.3 bits (116), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 23/29 (79%), Positives = 25/29 (86%)
Query: 51 VESSDTIDNVKAKIQDKKGTPPDQQRQIF 79
VE SDTI+NVKAKIQDK+ PPDQQR IF
Sbjct: 17 VEPSDTIENVKAKIQDKEXIPPDQQRLIF 45
>pdb|2GBJ|A Chain A, Crystal Structure Of The 9-10 8 Glycine Insertion Mutant
Of Ubiquitin.
pdb|2GBJ|B Chain B, Crystal Structure Of The 9-10 8 Glycine Insertion Mutant
Of Ubiquitin
Length = 84
Score = 65.1 bits (157), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 34/47 (72%), Positives = 36/47 (76%), Gaps = 1/47 (2%)
Query: 1 IEDKEEILRDQQRFIFAGKRLEDGRTLVDYNIHG-STLHSVRRFRGG 46
I+DKE I DQQR IFAGK+LEDGRTL DYNI STLH V R RGG
Sbjct: 38 IQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 84
Score = 52.4 bits (124), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 24/29 (82%), Positives = 26/29 (89%)
Query: 51 VESSDTIDNVKAKIQDKKGTPPDQQRQIF 79
VE SDTI+NVKAKIQDK+G PPDQQR IF
Sbjct: 25 VEPSDTIENVKAKIQDKEGIPPDQQRLIF 53
>pdb|3OLM|D Chain D, Structure And Function Of A Ubiquitin Binding Site
Within The Catalytic Domain Of A Hect Ubiquitin Ligase
Length = 79
Score = 64.7 bits (156), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 34/47 (72%), Positives = 36/47 (76%), Gaps = 1/47 (2%)
Query: 1 IEDKEEILRDQQRFIFAGKRLEDGRTLVDYNIHG-STLHSVRRFRGG 46
I+DKE I DQQR IFAGK+LEDGRTL DYNI STLH V R RGG
Sbjct: 33 IQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 79
Score = 54.7 bits (130), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 25/30 (83%), Positives = 27/30 (90%)
Query: 51 VESSDTIDNVKAKIQDKKGTPPDQQRQIFW 80
VESSDTIDNVK+KIQDK+G PPDQQR IF
Sbjct: 20 VESSDTIDNVKSKIQDKEGIPPDQQRLIFA 49
>pdb|1AAR|A Chain A, Structure Of A Diubiquitin Conjugate And A Model For
Interaction With Ubiquitin Conjugating Enzyme (E2)
pdb|1AAR|B Chain B, Structure Of A Diubiquitin Conjugate And A Model For
Interaction With Ubiquitin Conjugating Enzyme (E2)
pdb|1TBE|A Chain A, Structure Of Tetraubiquitin Shows How Multiubiquitin
Chains Can Be Formed
pdb|1TBE|B Chain B, Structure Of Tetraubiquitin Shows How Multiubiquitin
Chains Can Be Formed
pdb|1F9J|A Chain A, Structure Of A New Crystal Form Of Tetraubiquitin
pdb|1F9J|B Chain B, Structure Of A New Crystal Form Of Tetraubiquitin
pdb|1P3Q|U Chain U, Mechanism Of Ubiquitin Recognition By The Cue Domain Of
Vps9
pdb|1P3Q|V Chain V, Mechanism Of Ubiquitin Recognition By The Cue Domain Of
Vps9
pdb|1UZX|B Chain B, A Complex Of The Vps23 Uev With Ubiquitin
pdb|1YD8|U Chain U, Complex Of Human Gga3 Gat Domain And Ubiquitin
pdb|1YD8|V Chain V, Complex Of Human Gga3 Gat Domain And Ubiquitin
pdb|1WR6|E Chain E, Crystal Structure Of Gga3 Gat Domain In Complex With
Ubiquitin
pdb|1WR6|F Chain F, Crystal Structure Of Gga3 Gat Domain In Complex With
Ubiquitin
pdb|1WR6|G Chain G, Crystal Structure Of Gga3 Gat Domain In Complex With
Ubiquitin
pdb|1WR6|H Chain H, Crystal Structure Of Gga3 Gat Domain In Complex With
Ubiquitin
pdb|1WRD|B Chain B, Crystal Structure Of Tom1 Gat Domain In Complex With
Ubiquitin
pdb|2D3G|A Chain A, Double Sided Ubiquitin Binding Of Hrs-Uim
pdb|2D3G|B Chain B, Double Sided Ubiquitin Binding Of Hrs-Uim
pdb|2C7M|B Chain B, Human Rabex-5 Residues 1-74 In Complex With Ubiquitin
pdb|2C7N|B Chain B, Human Rabex-5 Residues 1-74 In Complex With Ubiquitin
pdb|2C7N|D Chain D, Human Rabex-5 Residues 1-74 In Complex With Ubiquitin
pdb|2C7N|F Chain F, Human Rabex-5 Residues 1-74 In Complex With Ubiquitin
pdb|2C7N|H Chain H, Human Rabex-5 Residues 1-74 In Complex With Ubiquitin
pdb|2C7N|J Chain J, Human Rabex-5 Residues 1-74 In Complex With Ubiquitin
pdb|2C7N|L Chain L, Human Rabex-5 Residues 1-74 In Complex With Ubiquitin
pdb|2FID|A Chain A, Crystal Structure Of A Bovine Rabex-5 Fragment Complexed
With Ubiquitin
pdb|2FIF|A Chain A, Crystal Structure Of A Bovine Rabex-5 Fragment Complexed
With Ubiquitin
pdb|2FIF|C Chain C, Crystal Structure Of A Bovine Rabex-5 Fragment Complexed
With Ubiquitin
pdb|2FIF|E Chain E, Crystal Structure Of A Bovine Rabex-5 Fragment Complexed
With Ubiquitin
pdb|2G45|B Chain B, Co-Crystal Structure Of Znf Ubp Domain From The
Deubiquitinating Enzyme Isopeptidase T (Isot) In
Complex With Ubiquitin
pdb|2G45|E Chain E, Co-Crystal Structure Of Znf Ubp Domain From The
Deubiquitinating Enzyme Isopeptidase T (Isot) In
Complex With Ubiquitin
pdb|2HD5|B Chain B, Usp2 In Complex With Ubiquitin
pdb|2GMI|C Chain C, Mms2UBC13~UBIQUITIN
pdb|2DX5|B Chain B, The Complex Structure Between The Mouse Eap45-Glue
Domain And Ubiquitin
pdb|2HTH|A Chain A, Structural Basis For Ubiquitin Recognition By The Human
Eap45ESCRT-Ii Glue Domain
pdb|2OOB|B Chain B, Crystal Structure Of The Uba Domain From Cbl-B Ubiquitin
Ligase In Complex With Ubiquitin
pdb|2O6V|A Chain A, Crystal Structure And Solution Nmr Studies Of
Lys48-Linked Tetraubiquitin At Neutral Ph
pdb|2O6V|C Chain C, Crystal Structure And Solution Nmr Studies Of
Lys48-Linked Tetraubiquitin At Neutral Ph
pdb|2O6V|E Chain E, Crystal Structure And Solution Nmr Studies Of
Lys48-Linked Tetraubiquitin At Neutral Ph
pdb|2O6V|G Chain G, Crystal Structure And Solution Nmr Studies Of
Lys48-Linked Tetraubiquitin At Neutral Ph
pdb|2PE9|A Chain A, Nmr Based Structure Of The Open Conformation Of Lys48-
Linked Di-Ubiquitin Using Experimental Global
Rotational Diffusion Tensor From Nmr Relaxation
Measurements
pdb|2PE9|B Chain B, Nmr Based Structure Of The Open Conformation Of Lys48-
Linked Di-Ubiquitin Using Experimental Global
Rotational Diffusion Tensor From Nmr Relaxation
Measurements
pdb|2PEA|A Chain A, Nmr Based Structure Of The Closed Conformation Of Lys48-
Linked Di-Ubiquitin Using Experimental Global
Rotational Diffusion Tensor From Nmr Relaxation
Measurements
pdb|2PEA|B Chain B, Nmr Based Structure Of The Closed Conformation Of Lys48-
Linked Di-Ubiquitin Using Experimental Global
Rotational Diffusion Tensor From Nmr Relaxation
Measurements
pdb|1UBI|A Chain A, Synthetic Structural And Biological Studies Of The
Ubiquitin System. Part 1
pdb|1UBQ|A Chain A, Structure Of Ubiquitin Refined At 1.8 Angstroms
Resolution
pdb|2QHO|A Chain A, Crystal Structure Of The Uba Domain From Edd Ubiquitin
Ligase In Complex With Ubiquitin
pdb|2QHO|C Chain C, Crystal Structure Of The Uba Domain From Edd Ubiquitin
Ligase In Complex With Ubiquitin
pdb|2QHO|E Chain E, Crystal Structure Of The Uba Domain From Edd Ubiquitin
Ligase In Complex With Ubiquitin
pdb|2QHO|G Chain G, Crystal Structure Of The Uba Domain From Edd Ubiquitin
Ligase In Complex With Ubiquitin
pdb|1D3Z|A Chain A, Ubiquitin Nmr Structure
pdb|1FXT|B Chain B, Structure Of A Conjugating Enzyme-Ubiquitin Thiolester
Complex
pdb|1Q5W|B Chain B, Ubiquitin Recognition By Npl4 Zinc-Fingers
pdb|1V80|A Chain A, Solution Structures Of Ubiquitin At 30 Bar And 3 Kbar
pdb|1V81|A Chain A, Solution Structures Of Ubiquitin At 30 Bar And 3 Kbar
pdb|1XQQ|A Chain A, Simultaneous Determination Of Protein Structure And
Dynamics
pdb|2BGF|A Chain A, Nmr Structure Of Lys48-Linked Di-Ubiquitin Using
Chemical Shift Perturbation Data Together With Rdcs And
15n- Relaxation Data
pdb|2BGF|B Chain B, Nmr Structure Of Lys48-Linked Di-Ubiquitin Using
Chemical Shift Perturbation Data Together With Rdcs And
15n- Relaxation Data
pdb|2DEN|B Chain B, Solution Structure Of The Ubiquitin-Associated Domain Of
Human Bmsc-Ubp And Its Complex With Ubiquitin
pdb|2FUH|B Chain B, Solution Structure Of The Ubch5cUB NON-Covalent Complex
pdb|2NR2|A Chain A, The Mumo (Minimal Under-Restraining Minimal Over-
Restraining) Method For The Determination Of Native
States Ensembles Of Proteins
pdb|2ZCC|A Chain A, Ubiquitin Crystallized Under High Pressure
pdb|2ZCC|B Chain B, Ubiquitin Crystallized Under High Pressure
pdb|2ZCC|C Chain C, Ubiquitin Crystallized Under High Pressure
pdb|2JF5|A Chain A, Crystal Structure Of Lys63-Linked Di-Ubiquitin
pdb|2JF5|B Chain B, Crystal Structure Of Lys63-Linked Di-Ubiquitin
pdb|2JY6|A Chain A, Solution Structure Of The Complex Of Ubiquitin And
Ubiquilin 1 Uba Domain
pdb|2JZZ|A Chain A, Solid-State Nmr Structure Of Microcrystalline Ubiquitin
pdb|2Z59|B Chain B, Complex Structures Of Mouse Rpn13 (22-130aa) And
Ubiquitin
pdb|2K39|A Chain A, Recognition Dynamics Up To Microseconds Revealed From
Rdc Derived Ubiquitin Ensemble In Solution
pdb|2JRI|B Chain B, Solution Structure Of The Josephin Domain Of Ataxin-3 In
Complex With Ubiquitin Molecule.
pdb|2JRI|C Chain C, Solution Structure Of The Josephin Domain Of Ataxin-3 In
Complex With Ubiquitin Molecule.
pdb|3EFU|A Chain A, X-Ray Structure Of Human Ubiquitin-Hg(Ii) Adduct
pdb|3EEC|A Chain A, X-Ray Structure Of Human Ubiquitin Cd(Ii) Adduct
pdb|3EEC|B Chain B, X-Ray Structure Of Human Ubiquitin Cd(Ii) Adduct
pdb|3EHV|A Chain A, X-Ray Structure Of Human Ubiquitin Zn(Ii) Adduct
pdb|3EHV|B Chain B, X-Ray Structure Of Human Ubiquitin Zn(Ii) Adduct
pdb|3EHV|C Chain C, X-Ray Structure Of Human Ubiquitin Zn(Ii) Adduct
pdb|2K8B|A Chain A, Solution Structure Of Plaa Family Ubiquitin Binding
Domain (Pfuc) Cis Isomer In Complex With Ubiquitin
pdb|2K8C|A Chain A, Solution Structure Of Plaa Family Ubiquitin Binding
Domain (Pfuc) Trans Isomer In Complex With Ubiquitin
pdb|3H1U|A Chain A, Structure Of Ubiquitin In Complex With Cd Ions
pdb|3H1U|B Chain B, Structure Of Ubiquitin In Complex With Cd Ions
pdb|3HM3|A Chain A, The Structure And Conformation Of Lys-63 Linked
Tetra-Ubiquitin
pdb|3HM3|B Chain B, The Structure And Conformation Of Lys-63 Linked
Tetra-Ubiquitin
pdb|3HM3|C Chain C, The Structure And Conformation Of Lys-63 Linked
Tetra-Ubiquitin
pdb|3HM3|D Chain D, The Structure And Conformation Of Lys-63 Linked
Tetra-Ubiquitin
pdb|2KDE|B Chain B, Nmr Structure Of Major S5a (196-306):k48 Linked
Diubiquitin Species
pdb|2KDE|C Chain C, Nmr Structure Of Major S5a (196-306):k48 Linked
Diubiquitin Species
pdb|2KDF|B Chain B, Nmr Structure Of Minor S5a (196-306):k48 Linked
Diubiquitin Species
pdb|2KDF|C Chain C, Nmr Structure Of Minor S5a (196-306):k48 Linked
Diubiquitin Species
pdb|3H7P|B Chain B, Crystal Structure Of K63-Linked Di-Ubiquitin
pdb|2KLG|A Chain A, Pere Nmr Structure Of Ubiquitin
pdb|2KN5|A Chain A, A Correspondence Between Solution-State Dynamics Of An
Individual Protein And The Sequence And Conformational
Diversity Of Its Family
pdb|2WWZ|A Chain A, Tab2 Nzf Domain In Complex With Lys63-Linked
Di-Ubiquitin, P212121
pdb|2WWZ|B Chain B, Tab2 Nzf Domain In Complex With Lys63-Linked
Di-Ubiquitin, P212121
pdb|2WX0|A Chain A, Tab2 Nzf Domain In Complex With Lys63-Linked
Di-Ubiquitin, P21
pdb|2WX0|B Chain B, Tab2 Nzf Domain In Complex With Lys63-Linked
Di-Ubiquitin, P21
pdb|2WX0|E Chain E, Tab2 Nzf Domain In Complex With Lys63-Linked
Di-Ubiquitin, P21
pdb|2WX0|F Chain F, Tab2 Nzf Domain In Complex With Lys63-Linked
Di-Ubiquitin, P21
pdb|2WX1|A Chain A, Tab2 Nzf Domain In Complex With Lys63-Linked
Tri-Ubiquitin, P212121
pdb|2WX1|B Chain B, Tab2 Nzf Domain In Complex With Lys63-Linked
Tri-Ubiquitin, P212121
pdb|3A33|B Chain B, Ubch5b~ubiquitin Conjugate
pdb|3M3J|A Chain A, A New Crystal Form Of Lys48-Linked Diubiquitin
pdb|3M3J|B Chain B, A New Crystal Form Of Lys48-Linked Diubiquitin
pdb|3M3J|C Chain C, A New Crystal Form Of Lys48-Linked Diubiquitin
pdb|3M3J|D Chain D, A New Crystal Form Of Lys48-Linked Diubiquitin
pdb|3M3J|E Chain E, A New Crystal Form Of Lys48-Linked Diubiquitin
pdb|3M3J|F Chain F, A New Crystal Form Of Lys48-Linked Diubiquitin
pdb|3NHE|B Chain B, High Resolution Structure (1.26a) Of Usp2a In Complex
With Ubiquitin
pdb|2XEW|A Chain A, Crystal Structure Of K11-Linked Diubiquitin
pdb|2XEW|B Chain B, Crystal Structure Of K11-Linked Diubiquitin
pdb|2XEW|C Chain C, Crystal Structure Of K11-Linked Diubiquitin
pdb|2XEW|D Chain D, Crystal Structure Of K11-Linked Diubiquitin
pdb|2XEW|E Chain E, Crystal Structure Of K11-Linked Diubiquitin
pdb|2XEW|F Chain F, Crystal Structure Of K11-Linked Diubiquitin
pdb|2XEW|G Chain G, Crystal Structure Of K11-Linked Diubiquitin
pdb|2XEW|H Chain H, Crystal Structure Of K11-Linked Diubiquitin
pdb|2XEW|I Chain I, Crystal Structure Of K11-Linked Diubiquitin
pdb|2XEW|J Chain J, Crystal Structure Of K11-Linked Diubiquitin
pdb|2XEW|K Chain K, Crystal Structure Of K11-Linked Diubiquitin
pdb|2XEW|L Chain L, Crystal Structure Of K11-Linked Diubiquitin
pdb|2XK5|A Chain A, Crystal Structure Of K6-Linked Diubiquitin
pdb|3ALB|A Chain A, Cyclic Lys48-Linked Tetraubiquitin
pdb|3ALB|B Chain B, Cyclic Lys48-Linked Tetraubiquitin
pdb|3ALB|C Chain C, Cyclic Lys48-Linked Tetraubiquitin
pdb|3ALB|D Chain D, Cyclic Lys48-Linked Tetraubiquitin
pdb|3OFI|C Chain C, Crystal Structure Of Human Insulin-Degrading Enzyme In
Complex With Ubiquitin
pdb|3OFI|D Chain D, Crystal Structure Of Human Insulin-Degrading Enzyme In
Complex With Ubiquitin
pdb|2KWU|B Chain B, Solution Structure Of Ubm2 Of Murine Polymerase Iota In
Complex With Ubiquitin
pdb|2KWV|B Chain B, Solution Structure Of Ubm1 Of Murine Polymerase Iota In
Complex With Ubiquitin
pdb|2KTF|A Chain A, Solution Nmr Structure Of Human Polymerase Iota Ubm2 In
Complex With Ubiquitin
pdb|2L0F|A Chain A, Solution Nmr Structure Of Human Polymerase Iota Ubm2
(P692a Mutant) In Complex With Ubiquitin
pdb|2L0T|A Chain A, Solution Structure Of The Complex Of Ubiquitin And The
Vhs Domain Of Stam2
pdb|3N30|A Chain A, Crystal Structure Of Cubic Zn3-Hub (Human Ubiquitin)
Adduct
pdb|3N30|B Chain B, Crystal Structure Of Cubic Zn3-Hub (Human Ubiquitin)
Adduct
pdb|3N32|A Chain A, The Crystal Structure Of Human Ubiquitin Adduct With
Zeise's Salt
pdb|2L3Z|A Chain A, Proton-Detected 4d Dream Solid-State Nmr Structure Of
Ubiquitin
pdb|3PHD|E Chain E, Crystal Structure Of Human Hdac6 In Complex With
Ubiquitin
pdb|3PHD|F Chain F, Crystal Structure Of Human Hdac6 In Complex With
Ubiquitin
pdb|3PHD|G Chain G, Crystal Structure Of Human Hdac6 In Complex With
Ubiquitin
pdb|3PHD|H Chain H, Crystal Structure Of Human Hdac6 In Complex With
Ubiquitin
pdb|2XBB|C Chain C, Nedd4 Hect:ub Complex
pdb|2XBB|D Chain D, Nedd4 Hect:ub Complex
pdb|2KOX|A Chain A, Nmr Residual Dipolar Couplings Identify Long Range
Correlated Motions In The Backbone Of The Protein
Ubiquitin
pdb|2RR9|A Chain A, The Solution Structure Of The K63-Ub2:tuims Complex
pdb|2RR9|B Chain B, The Solution Structure Of The K63-Ub2:tuims Complex
pdb|3NS8|A Chain A, Crystal Structure Of An Open Conformation Of
Lys48-Linked Diubiquitin At Ph 7.5
pdb|3NS8|B Chain B, Crystal Structure Of An Open Conformation Of
Lys48-Linked Diubiquitin At Ph 7.5
pdb|3AUL|A Chain A, Crystal Structure Of Wild-Type Lys48-Linked Diubiquitin
In An Open Conformation
pdb|3AUL|B Chain B, Crystal Structure Of Wild-Type Lys48-Linked Diubiquitin
In An Open Conformation
pdb|4DDG|I Chain I, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDG|E Chain E, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDG|F Chain F, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDG|O Chain O, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDG|P Chain P, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDI|G Chain G, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDI|H Chain H, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDI|I Chain I, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|3UGB|B Chain B, Ubch5c~ubiquitin Conjugate
pdb|3TBL|D Chain D, Structure Of Mono-Ubiquitinated Pcna: Implications For
Dna Polymerase Switching And Okazaki Fragment
Maturation
pdb|3TBL|E Chain E, Structure Of Mono-Ubiquitinated Pcna: Implications For
Dna Polymerase Switching And Okazaki Fragment
Maturation
pdb|4DDG|D Chain D, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDG|G Chain G, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDG|H Chain H, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDG|M Chain M, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDG|N Chain N, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDG|Q Chain Q, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDG|R Chain R, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDI|D Chain D, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDI|E Chain E, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|4DDI|F Chain F, Crystal Structure Of Human Otub1UBCH5B~UBUB
pdb|2LJ5|A Chain A, Description Of The Structural Fluctuations Of Proteins
From Structure- Based Calculations Of Residual Dipolar
Couplings
pdb|3VHT|C Chain C, Crystal Structure Of Gfp-Wrnip1 Ubz Domain Fusion
Protein In Complex With Ubiquitin
pdb|2LVO|A Chain A, Structure Of The Gp78cue Domain Bound To Monubiquitin
pdb|2LVP|A Chain A, Gp78cue Domain Bound To The Distal Ubiquitin Of
K48-Linked Diubiquitin
pdb|2LVP|B Chain B, Gp78cue Domain Bound To The Distal Ubiquitin Of
K48-Linked Diubiquitin
pdb|2LVQ|A Chain A, Gp78cue Domain Bound To The Proximal Ubiquitin Of
K48-Linked Diubiquitin
pdb|2LVQ|B Chain B, Gp78cue Domain Bound To The Proximal Ubiquitin Of
K48-Linked Diubiquitin
pdb|3VUW|A Chain A, Crystal Structure Of A20 Zf7 In Complex With Linear
Ubiquitin, Form I
pdb|3VUW|B Chain B, Crystal Structure Of A20 Zf7 In Complex With Linear
Ubiquitin, Form I
pdb|3VUW|C Chain C, Crystal Structure Of A20 Zf7 In Complex With Linear
Ubiquitin, Form I
pdb|3VUX|A Chain A, Crystal Structure Of A20 Zf7 In Complex With Linear
Ubiquitin, Form Ii
pdb|3VUX|B Chain B, Crystal Structure Of A20 Zf7 In Complex With Linear
Ubiquitin, Form Ii
pdb|3VUX|C Chain C, Crystal Structure Of A20 Zf7 In Complex With Linear
Ubiquitin, Form Ii
pdb|3VUY|A Chain A, Crystal Structure Of A20 Zf7 In Complex With Linear
Tetraubiquitin
pdb|3VUY|C Chain C, Crystal Structure Of A20 Zf7 In Complex With Linear
Tetraubiquitin
pdb|3VUY|B Chain B, Crystal Structure Of A20 Zf7 In Complex With Linear
Tetraubiquitin
Length = 76
Score = 64.7 bits (156), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 34/47 (72%), Positives = 36/47 (76%), Gaps = 1/47 (2%)
Query: 1 IEDKEEILRDQQRFIFAGKRLEDGRTLVDYNIHG-STLHSVRRFRGG 46
I+DKE I DQQR IFAGK+LEDGRTL DYNI STLH V R RGG
Sbjct: 30 IQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76
Score = 52.4 bits (124), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 24/29 (82%), Positives = 26/29 (89%)
Query: 51 VESSDTIDNVKAKIQDKKGTPPDQQRQIF 79
VE SDTI+NVKAKIQDK+G PPDQQR IF
Sbjct: 17 VEPSDTIENVKAKIQDKEGIPPDQQRLIF 45
>pdb|4AP4|C Chain C, Rnf4 - Ubch5a - Ubiquitin Heterotrimeric Complex
pdb|4AP4|F Chain F, Rnf4 - Ubch5a - Ubiquitin Heterotrimeric Complex
Length = 80
Score = 64.7 bits (156), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 34/47 (72%), Positives = 36/47 (76%), Gaps = 1/47 (2%)
Query: 1 IEDKEEILRDQQRFIFAGKRLEDGRTLVDYNIHG-STLHSVRRFRGG 46
I+DKE I DQQR IFAGK+LEDGRTL DYNI STLH V R RGG
Sbjct: 34 IQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 80
Score = 53.9 bits (128), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 29/46 (63%), Positives = 31/46 (67%), Gaps = 12/46 (26%)
Query: 46 GMQIFV------------ESSDTIDNVKAKIQDKKGTPPDQQRQIF 79
GMQIFV E SDTI+NVKAKIQDK+G PPDQQR IF
Sbjct: 4 GMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIF 49
>pdb|1YIW|A Chain A, X-Ray Crystal Structure Of A Chemically Synthesized
Ubiquitin
pdb|1YIW|B Chain B, X-Ray Crystal Structure Of A Chemically Synthesized
Ubiquitin
pdb|1YIW|C Chain C, X-Ray Crystal Structure Of A Chemically Synthesized
Ubiquitin
pdb|2FCQ|A Chain A, X-Ray Crystal Structure Of A Chemically Synthesized
Ubiquitin With A Cubic Space Group
pdb|2FCQ|B Chain B, X-Ray Crystal Structure Of A Chemically Synthesized
Ubiquitin With A Cubic Space Group
Length = 76
Score = 64.7 bits (156), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 34/47 (72%), Positives = 36/47 (76%), Gaps = 1/47 (2%)
Query: 1 IEDKEEILRDQQRFIFAGKRLEDGRTLVDYNIHG-STLHSVRRFRGG 46
I+DKE I DQQR IFAGK+LEDGRTL DYNI STLH V R RGG
Sbjct: 30 IQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76
Score = 52.4 bits (124), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 24/29 (82%), Positives = 26/29 (89%)
Query: 51 VESSDTIDNVKAKIQDKKGTPPDQQRQIF 79
VE SDTI+NVKAKIQDK+G PPDQQR IF
Sbjct: 17 VEPSDTIENVKAKIQDKEGIPPDQQRLIF 45
>pdb|2GBK|A Chain A, Crystal Structure Of The 9-10 Moad Insertion Mutant Of
Ubiquitin
pdb|2GBK|B Chain B, Crystal Structure Of The 9-10 Moad Insertion Mutant Of
Ubiquitin
pdb|2GBK|C Chain C, Crystal Structure Of The 9-10 Moad Insertion Mutant Of
Ubiquitin
pdb|2GBK|D Chain D, Crystal Structure Of The 9-10 Moad Insertion Mutant Of
Ubiquitin
Length = 83
Score = 64.7 bits (156), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 34/47 (72%), Positives = 36/47 (76%), Gaps = 1/47 (2%)
Query: 1 IEDKEEILRDQQRFIFAGKRLEDGRTLVDYNIHG-STLHSVRRFRGG 46
I+DKE I DQQR IFAGK+LEDGRTL DYNI STLH V R RGG
Sbjct: 37 IQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 83
Score = 58.2 bits (139), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 31/46 (67%), Positives = 33/46 (71%), Gaps = 2/46 (4%)
Query: 36 TLHSVRRFRGGMQIF--VESSDTIDNVKAKIQDKKGTPPDQQRQIF 79
TL VR GG I VE SDTI+NVKAKIQDK+G PPDQQR IF
Sbjct: 7 TLTQVRELVGGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIF 52
>pdb|1S1Q|B Chain B, Tsg101(Uev) Domain In Complex With Ubiquitin
pdb|1S1Q|D Chain D, Tsg101(Uev) Domain In Complex With Ubiquitin
pdb|1G6J|A Chain A, Structure Of Recombinant Human Ubiquitin In Aot Reverse
Micelles
Length = 76
Score = 64.7 bits (156), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 34/47 (72%), Positives = 36/47 (76%), Gaps = 1/47 (2%)
Query: 1 IEDKEEILRDQQRFIFAGKRLEDGRTLVDYNIHG-STLHSVRRFRGG 46
I+DKE I DQQR IFAGK+LEDGRTL DYNI STLH V R RGG
Sbjct: 30 IQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76
Score = 52.0 bits (123), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 24/29 (82%), Positives = 26/29 (89%)
Query: 51 VESSDTIDNVKAKIQDKKGTPPDQQRQIF 79
VE SDTI+NVKAKIQDK+G PPDQQR IF
Sbjct: 17 VEPSDTIENVKAKIQDKEGIPPDQQRLIF 45
>pdb|2ZNV|C Chain C, Crystal Structure Of Human Amsh-Lp Dub Domain In Complex
With Lys63-Linked Ubiquitin Dimer
pdb|2ZNV|F Chain F, Crystal Structure Of Human Amsh-Lp Dub Domain In Complex
With Lys63-Linked Ubiquitin Dimer
pdb|3A1Q|A Chain A, Crystal Structure Of The Mouse Rap80 Uims In Complex
With Lys63-Linked Di-Ubiquitin
pdb|3A1Q|D Chain D, Crystal Structure Of The Mouse Rap80 Uims In Complex
With Lys63-Linked Di-Ubiquitin
pdb|3JSV|B Chain B, Crystal Structure Of Mouse Nemo Cozi In Complex With
Lys63- Linked Di-Ubiquitin
pdb|3A9J|B Chain B, Crystal Structure Of The Mouse Tab2-Nzf In Complex With
Lys63-Linked Di-Ubiquitin
pdb|3A9K|B Chain B, Crystal Structure Of The Mouse Tab3-Nzf In Complex With
Lys63-Linked Di-Ubiquitin
Length = 77
Score = 64.7 bits (156), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 34/47 (72%), Positives = 36/47 (76%), Gaps = 1/47 (2%)
Query: 1 IEDKEEILRDQQRFIFAGKRLEDGRTLVDYNIHG-STLHSVRRFRGG 46
I+DKE I DQQR IFAGK+LEDGRTL DYNI STLH V R RGG
Sbjct: 30 IQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76
Score = 52.0 bits (123), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 24/29 (82%), Positives = 26/29 (89%)
Query: 51 VESSDTIDNVKAKIQDKKGTPPDQQRQIF 79
VE SDTI+NVKAKIQDK+G PPDQQR IF
Sbjct: 17 VEPSDTIENVKAKIQDKEGIPPDQQRLIF 45
>pdb|3L0W|B Chain B, Structure Of Split Monoubiquitinated Pcna With Ubiquitin
In Position Two
pdb|3L10|B Chain B, Structure Of Split Monoubiquitinated Pcna With Ubiquitin
In Position One
Length = 169
Score = 64.7 bits (156), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 34/47 (72%), Positives = 36/47 (76%), Gaps = 1/47 (2%)
Query: 1 IEDKEEILRDQQRFIFAGKRLEDGRTLVDYNIHG-STLHSVRRFRGG 46
I+DKE I DQQR IFAGK+LEDGRTL DYNI STLH V R RGG
Sbjct: 30 IQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76
Score = 54.3 bits (129), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 25/29 (86%), Positives = 27/29 (93%)
Query: 51 VESSDTIDNVKAKIQDKKGTPPDQQRQIF 79
VESSDTIDNVK+KIQDK+G PPDQQR IF
Sbjct: 17 VESSDTIDNVKSKIQDKEGIPPDQQRLIF 45
>pdb|2LD9|A Chain A, Backbone Structure Of Ubiquitin Determined Using
Backbone Amide Noes And Backbone N-H And N-C Rdcs
Length = 77
Score = 64.7 bits (156), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 34/47 (72%), Positives = 36/47 (76%), Gaps = 1/47 (2%)
Query: 1 IEDKEEILRDQQRFIFAGKRLEDGRTLVDYNIHG-STLHSVRRFRGG 46
I+DKE I DQQR IFAGK+LEDGRTL DYNI STLH V R RGG
Sbjct: 31 IQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 77
Score = 53.9 bits (128), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 29/46 (63%), Positives = 31/46 (67%), Gaps = 12/46 (26%)
Query: 46 GMQIFV------------ESSDTIDNVKAKIQDKKGTPPDQQRQIF 79
GMQIFV E SDTI+NVKAKIQDK+G PPDQQR IF
Sbjct: 1 GMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIF 46
>pdb|3NOB|A Chain A, Structure Of K11-Linked Di-Ubiquitin
pdb|3NOB|B Chain B, Structure Of K11-Linked Di-Ubiquitin
pdb|3NOB|C Chain C, Structure Of K11-Linked Di-Ubiquitin
pdb|3NOB|D Chain D, Structure Of K11-Linked Di-Ubiquitin
pdb|3NOB|E Chain E, Structure Of K11-Linked Di-Ubiquitin
pdb|3NOB|F Chain F, Structure Of K11-Linked Di-Ubiquitin
pdb|3NOB|G Chain G, Structure Of K11-Linked Di-Ubiquitin
pdb|3NOB|H Chain H, Structure Of K11-Linked Di-Ubiquitin
Length = 78
Score = 64.7 bits (156), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 34/47 (72%), Positives = 36/47 (76%), Gaps = 1/47 (2%)
Query: 1 IEDKEEILRDQQRFIFAGKRLEDGRTLVDYNIHG-STLHSVRRFRGG 46
I+DKE I DQQR IFAGK+LEDGRTL DYNI STLH V R RGG
Sbjct: 32 IQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 78
Score = 52.4 bits (124), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 24/29 (82%), Positives = 26/29 (89%)
Query: 51 VESSDTIDNVKAKIQDKKGTPPDQQRQIF 79
VE SDTI+NVKAKIQDK+G PPDQQR IF
Sbjct: 19 VEPSDTIENVKAKIQDKEGIPPDQQRLIF 47
>pdb|3JVZ|X Chain X, E2~ubiquitin-Hect
pdb|3JVZ|Y Chain Y, E2~ubiquitin-Hect
pdb|3JW0|X Chain X, E2~ubiquitin-Hect
pdb|3JW0|Y Chain Y, E2~ubiquitin-Hect
pdb|4AUQ|C Chain C, Structure Of Birc7-Ubch5b-Ub Complex.
pdb|4AUQ|F Chain F, Structure Of Birc7-Ubch5b-Ub Complex
Length = 81
Score = 64.7 bits (156), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 34/47 (72%), Positives = 36/47 (76%), Gaps = 1/47 (2%)
Query: 1 IEDKEEILRDQQRFIFAGKRLEDGRTLVDYNIHG-STLHSVRRFRGG 46
I+DKE I DQQR IFAGK+LEDGRTL DYNI STLH V R RGG
Sbjct: 35 IQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 81
Score = 53.5 bits (127), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 29/48 (60%), Positives = 31/48 (64%), Gaps = 12/48 (25%)
Query: 45 GGMQIFV------------ESSDTIDNVKAKIQDKKGTPPDQQRQIFW 80
G MQIFV E SDTI+NVKAKIQDK+G PPDQQR IF
Sbjct: 4 GSMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFA 51
>pdb|1OTR|B Chain B, Solution Structure Of A Cue-Ubiquitin Complex
pdb|1Q0W|B Chain B, Solution Structure Of Vps27 Amino-Terminal Uim-Ubiquitin
Complex
pdb|1WR1|A Chain A, The Complex Sturcture Of Dsk2p Uba With Ubiquitin
pdb|2G3Q|B Chain B, Solution Structure Of Ede1 Uba-Ubiquitin Complex
pdb|2JT4|B Chain B, Solution Structure Of The Sla1 Sh3-3-Ubiquitin Complex
pdb|3CMM|B Chain B, Crystal Structure Of The Uba1-Ubiquitin Complex
pdb|3CMM|D Chain D, Crystal Structure Of The Uba1-Ubiquitin Complex
pdb|2L00|B Chain B, Solution Structure Of The Non-Covalent Complex Of The
Znf216 A20 Domain With Ubiquitin
Length = 76
Score = 64.7 bits (156), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 34/47 (72%), Positives = 36/47 (76%), Gaps = 1/47 (2%)
Query: 1 IEDKEEILRDQQRFIFAGKRLEDGRTLVDYNIHG-STLHSVRRFRGG 46
I+DKE I DQQR IFAGK+LEDGRTL DYNI STLH V R RGG
Sbjct: 30 IQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76
Score = 54.3 bits (129), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 25/29 (86%), Positives = 27/29 (93%)
Query: 51 VESSDTIDNVKAKIQDKKGTPPDQQRQIF 79
VESSDTIDNVK+KIQDK+G PPDQQR IF
Sbjct: 17 VESSDTIDNVKSKIQDKEGIPPDQQRLIF 45
>pdb|3U5G|FF Chain f, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome B
Length = 152
Score = 64.7 bits (156), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 34/47 (72%), Positives = 36/47 (76%), Gaps = 1/47 (2%)
Query: 1 IEDKEEILRDQQRFIFAGKRLEDGRTLVDYNIHG-STLHSVRRFRGG 46
I+DKE I DQQR IFAGK+LEDGRTL DYNI STLH V R RGG
Sbjct: 30 IQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76
Score = 55.1 bits (131), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 25/29 (86%), Positives = 27/29 (93%)
Query: 51 VESSDTIDNVKAKIQDKKGTPPDQQRQIF 79
VESSDTIDNVK+KIQDK+G PPDQQR IF
Sbjct: 17 VESSDTIDNVKSKIQDKEGIPPDQQRLIF 45
>pdb|3ZF7|SS Chain s, High-resolution Cryo-electron Microscopy Structure Of
The Trypanosoma Brucei Ribosome
Length = 128
Score = 64.3 bits (155), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 33/48 (68%), Positives = 37/48 (77%), Gaps = 1/48 (2%)
Query: 1 IEDKEEILRDQQRFIFAGKRLEDGRTLVDYNIHG-STLHSVRRFRGGM 47
I+DKE I DQQR IFAGK+LE+GRTL DYNI STLH V R RGG+
Sbjct: 30 IQDKEGIPPDQQRLIFAGKQLEEGRTLADYNIQKESTLHLVLRLRGGV 77
Score = 53.9 bits (128), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 24/29 (82%), Positives = 27/29 (93%)
Query: 51 VESSDTIDNVKAKIQDKKGTPPDQQRQIF 79
VE+SDTI+NVKAKIQDK+G PPDQQR IF
Sbjct: 17 VEASDTIENVKAKIQDKEGIPPDQQRLIF 45
>pdb|1SIF|A Chain A, Crystal Structure Of A Multiple Hydrophobic Core Mutant
Of Ubiquitin
Length = 88
Score = 64.3 bits (155), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 34/47 (72%), Positives = 36/47 (76%), Gaps = 1/47 (2%)
Query: 1 IEDKEEILRDQQRFIFAGKRLEDGRTLVDYNIHG-STLHSVRRFRGG 46
I+DKE I DQQR IFAGK+LEDGRTL DYNI STLH V R RGG
Sbjct: 39 IQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 85
Score = 49.7 bits (117), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 22/31 (70%), Positives = 27/31 (87%)
Query: 49 IFVESSDTIDNVKAKIQDKKGTPPDQQRQIF 79
+ +E SDTI+N+KAKIQDK+G PPDQQR IF
Sbjct: 24 VEMEPSDTIENLKAKIQDKEGIPPDQQRLIF 54
>pdb|2KHW|B Chain B, Solution Structure Of The Human Polymerase Iota Ubm2-
Ubiquitin Complex
pdb|3K9P|B Chain B, The Crystal Structure Of E2-25k And Ubiquitin Complex
pdb|3OJ3|A Chain A, Crystal Structure Of The A20 Znf4 And Ubiquitin Complex
pdb|3OJ3|B Chain B, Crystal Structure Of The A20 Znf4 And Ubiquitin Complex
pdb|3OJ3|C Chain C, Crystal Structure Of The A20 Znf4 And Ubiquitin Complex
pdb|3OJ3|D Chain D, Crystal Structure Of The A20 Znf4 And Ubiquitin Complex
pdb|3OJ3|E Chain E, Crystal Structure Of The A20 Znf4 And Ubiquitin Complex
pdb|3OJ3|F Chain F, Crystal Structure Of The A20 Znf4 And Ubiquitin Complex
pdb|3OJ3|G Chain G, Crystal Structure Of The A20 Znf4 And Ubiquitin Complex
pdb|3OJ3|H Chain H, Crystal Structure Of The A20 Znf4 And Ubiquitin Complex
pdb|3OJ4|B Chain B, Crystal Structure Of The A20 Znf4, Ubiquitin And Ubch5a
Complex
pdb|3OJ4|E Chain E, Crystal Structure Of The A20 Znf4, Ubiquitin And Ubch5a
Complex
pdb|3PTF|C Chain C, X-Ray Structure Of The Non-Covalent Complex Between
Ubch5a And Ubiquitin
pdb|3PTF|D Chain D, X-Ray Structure Of The Non-Covalent Complex Between
Ubch5a And Ubiquitin
Length = 79
Score = 64.3 bits (155), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 34/47 (72%), Positives = 36/47 (76%), Gaps = 1/47 (2%)
Query: 1 IEDKEEILRDQQRFIFAGKRLEDGRTLVDYNIHG-STLHSVRRFRGG 46
I+DKE I DQQR IFAGK+LEDGRTL DYNI STLH V R RGG
Sbjct: 33 IQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 79
Score = 52.4 bits (124), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 24/29 (82%), Positives = 26/29 (89%)
Query: 51 VESSDTIDNVKAKIQDKKGTPPDQQRQIF 79
VE SDTI+NVKAKIQDK+G PPDQQR IF
Sbjct: 20 VEPSDTIENVKAKIQDKEGIPPDQQRLIF 48
>pdb|2ZNV|B Chain B, Crystal Structure Of Human Amsh-Lp Dub Domain In Complex
With Lys63-Linked Ubiquitin Dimer
pdb|2ZNV|E Chain E, Crystal Structure Of Human Amsh-Lp Dub Domain In Complex
With Lys63-Linked Ubiquitin Dimer
pdb|3A1Q|B Chain B, Crystal Structure Of The Mouse Rap80 Uims In Complex
With Lys63-Linked Di-Ubiquitin
pdb|3A1Q|E Chain E, Crystal Structure Of The Mouse Rap80 Uims In Complex
With Lys63-Linked Di-Ubiquitin
pdb|3H7P|A Chain A, Crystal Structure Of K63-Linked Di-Ubiquitin
pdb|3JSV|A Chain A, Crystal Structure Of Mouse Nemo Cozi In Complex With
Lys63- Linked Di-Ubiquitin
pdb|3A9J|A Chain A, Crystal Structure Of The Mouse Tab2-Nzf In Complex With
Lys63-Linked Di-Ubiquitin
pdb|3A9K|A Chain A, Crystal Structure Of The Mouse Tab3-Nzf In Complex With
Lys63-Linked Di-Ubiquitin
Length = 76
Score = 64.3 bits (155), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 34/47 (72%), Positives = 36/47 (76%), Gaps = 1/47 (2%)
Query: 1 IEDKEEILRDQQRFIFAGKRLEDGRTLVDYNIH-GSTLHSVRRFRGG 46
I+DKE I DQQR IFAGK+LEDGRTL DYNI STLH V R RGG
Sbjct: 30 IQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQRESTLHLVLRLRGG 76
Score = 52.4 bits (124), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 24/29 (82%), Positives = 26/29 (89%)
Query: 51 VESSDTIDNVKAKIQDKKGTPPDQQRQIF 79
VE SDTI+NVKAKIQDK+G PPDQQR IF
Sbjct: 17 VEPSDTIENVKAKIQDKEGIPPDQQRLIF 45
>pdb|3DVG|X Chain X, Crystal Structure Of K63-Specific Fab Apu.3a8 Bound To
K63-Linked Di- Ubiquitin
pdb|3DVN|X Chain X, Crystal Structure Of K63-specific Fab Apu2.16 Bound To
K63-linked Di- Ubiquitin
pdb|3DVN|U Chain U, Crystal Structure Of K63-specific Fab Apu2.16 Bound To
K63-linked Di- Ubiquitin
Length = 80
Score = 64.3 bits (155), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 34/47 (72%), Positives = 36/47 (76%), Gaps = 1/47 (2%)
Query: 1 IEDKEEILRDQQRFIFAGKRLEDGRTLVDYNIHG-STLHSVRRFRGG 46
I+DKE I DQQR IFAGK+LEDGRTL DYNI STLH V R RGG
Sbjct: 33 IQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 79
Score = 52.0 bits (123), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 24/30 (80%), Positives = 26/30 (86%)
Query: 51 VESSDTIDNVKAKIQDKKGTPPDQQRQIFW 80
VE SDTI+NVKAKIQDK+G PPDQQR IF
Sbjct: 20 VEPSDTIENVKAKIQDKEGIPPDQQRLIFA 49
>pdb|4II3|B Chain B, Crystal Structure Of S. Pombe Ubiquitin Activating
Enzyme 1 (uba1) In Complex With Ubiquitin And Atp/mg
pdb|4II3|D Chain D, Crystal Structure Of S. Pombe Ubiquitin Activating
Enzyme 1 (uba1) In Complex With Ubiquitin And Atp/mg
Length = 96
Score = 64.3 bits (155), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 34/47 (72%), Positives = 36/47 (76%), Gaps = 1/47 (2%)
Query: 1 IEDKEEILRDQQRFIFAGKRLEDGRTLVDYNIHG-STLHSVRRFRGG 46
I+DKE I DQQR IFAGK+LEDGRTL DYNI STLH V R RGG
Sbjct: 50 IQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 96
Score = 54.7 bits (130), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 25/30 (83%), Positives = 27/30 (90%)
Query: 51 VESSDTIDNVKAKIQDKKGTPPDQQRQIFW 80
VESSDTIDNVK+KIQDK+G PPDQQR IF
Sbjct: 37 VESSDTIDNVKSKIQDKEGIPPDQQRLIFA 66
>pdb|4HCN|B Chain B, Crystal Structure Of Burkholderia Pseudomallei Effector
Protein Chbp In Complex With Ubiquitin
Length = 98
Score = 64.3 bits (155), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 34/47 (72%), Positives = 36/47 (76%), Gaps = 1/47 (2%)
Query: 1 IEDKEEILRDQQRFIFAGKRLEDGRTLVDYNIHG-STLHSVRRFRGG 46
I+DKE I DQQR IFAGK+LEDGRTL DYNI STLH V R RGG
Sbjct: 52 IQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 98
Score = 54.3 bits (129), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 25/29 (86%), Positives = 27/29 (93%)
Query: 51 VESSDTIDNVKAKIQDKKGTPPDQQRQIF 79
VESSDTIDNVK+KIQDK+G PPDQQR IF
Sbjct: 39 VESSDTIDNVKSKIQDKEGIPPDQQRLIF 67
>pdb|3VDZ|A Chain A, Tailoring Encodable Lanthanide-Binding Tags As Mri
Contrast Agents: Xq-Dse3-Ubiquitin At 2.4 Angstroms
pdb|3VDZ|B Chain B, Tailoring Encodable Lanthanide-Binding Tags As Mri
Contrast Agents: Xq-Dse3-Ubiquitin At 2.4 Angstroms
Length = 111
Score = 63.9 bits (154), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 34/47 (72%), Positives = 36/47 (76%), Gaps = 1/47 (2%)
Query: 1 IEDKEEILRDQQRFIFAGKRLEDGRTLVDYNIHG-STLHSVRRFRGG 46
I+DKE I DQQR IFAGK+LEDGRTL DYNI STLH V R RGG
Sbjct: 65 IQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 111
Score = 52.0 bits (123), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 24/34 (70%), Positives = 28/34 (82%)
Query: 47 MQIFVESSDTIDNVKAKIQDKKGTPPDQQRQIFW 80
+ + VE SDTI+NVKAKIQDK+G PPDQQR IF
Sbjct: 48 ITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFA 81
>pdb|3DVG|Y Chain Y, Crystal Structure Of K63-Specific Fab Apu.3a8 Bound To
K63-Linked Di- Ubiquitin
pdb|3DVN|Y Chain Y, Crystal Structure Of K63-specific Fab Apu2.16 Bound To
K63-linked Di- Ubiquitin
pdb|3DVN|V Chain V, Crystal Structure Of K63-specific Fab Apu2.16 Bound To
K63-linked Di- Ubiquitin
Length = 79
Score = 63.9 bits (154), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 34/47 (72%), Positives = 36/47 (76%), Gaps = 1/47 (2%)
Query: 1 IEDKEEILRDQQRFIFAGKRLEDGRTLVDYNIH-GSTLHSVRRFRGG 46
I+DKE I DQQR IFAGK+LEDGRTL DYNI STLH V R RGG
Sbjct: 33 IQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQRESTLHLVLRLRGG 79
Score = 52.4 bits (124), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 24/29 (82%), Positives = 26/29 (89%)
Query: 51 VESSDTIDNVKAKIQDKKGTPPDQQRQIF 79
VE SDTI+NVKAKIQDK+G PPDQQR IF
Sbjct: 20 VEPSDTIENVKAKIQDKEGIPPDQQRLIF 48
>pdb|1UD7|A Chain A, Solution Structure Of The Designed Hydrophobic Core
Mutant Of Ubiquitin, 1d7
Length = 76
Score = 63.5 bits (153), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 33/47 (70%), Positives = 36/47 (76%), Gaps = 1/47 (2%)
Query: 1 IEDKEEILRDQQRFIFAGKRLEDGRTLVDYNIHG-STLHSVRRFRGG 46
I+DKE I DQQR IFAGK+LEDGRTL DYNI ST+H V R RGG
Sbjct: 30 IQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTIHLVLRLRGG 76
Score = 49.7 bits (117), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 23/33 (69%), Positives = 27/33 (81%)
Query: 47 MQIFVESSDTIDNVKAKIQDKKGTPPDQQRQIF 79
+ I VE SDT++N KAKIQDK+G PPDQQR IF
Sbjct: 13 VTIEVEPSDTVENFKAKIQDKEGIPPDQQRLIF 45
>pdb|2OJR|A Chain A, Structure Of Ubiquitin Solved By Sad Using The Lanthanide-
Binding Tag
Length = 111
Score = 63.5 bits (153), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 34/47 (72%), Positives = 36/47 (76%), Gaps = 1/47 (2%)
Query: 1 IEDKEEILRDQQRFIFAGKRLEDGRTLVDYNIHG-STLHSVRRFRGG 46
I+DKE I DQQR IFAGK+LEDGRTL DYNI STLH V R RGG
Sbjct: 65 IQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 111
Score = 51.6 bits (122), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 24/33 (72%), Positives = 28/33 (84%)
Query: 47 MQIFVESSDTIDNVKAKIQDKKGTPPDQQRQIF 79
+ + VE SDTI+NVKAKIQDK+G PPDQQR IF
Sbjct: 48 ITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIF 80
>pdb|1ZGU|B Chain B, Solution Structure Of The Human Mms2-Ubiquitin Complex
Length = 76
Score = 63.5 bits (153), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 33/47 (70%), Positives = 36/47 (76%), Gaps = 1/47 (2%)
Query: 1 IEDKEEILRDQQRFIFAGKRLEDGRTLVDYNIHG-STLHSVRRFRGG 46
I+DKE I DQQR IFAG++LEDGRTL DYNI STLH V R RGG
Sbjct: 30 IQDKEGIPPDQQRLIFAGRQLEDGRTLSDYNIQKESTLHLVLRLRGG 76
Score = 52.4 bits (124), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 24/29 (82%), Positives = 26/29 (89%)
Query: 51 VESSDTIDNVKAKIQDKKGTPPDQQRQIF 79
VE SDTI+NVKAKIQDK+G PPDQQR IF
Sbjct: 17 VEPSDTIENVKAKIQDKEGIPPDQQRLIF 45
>pdb|4HJK|A Chain A, U7ub7 Disulfide Variant
Length = 77
Score = 63.5 bits (153), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 33/47 (70%), Positives = 35/47 (74%), Gaps = 1/47 (2%)
Query: 1 IEDKEEILRDQQRFIFAGKRLEDGRTLVDYNIHG-STLHSVRRFRGG 46
I+DK DQQR IFAGK+LEDGRTL DYNI STLH VRR RGG
Sbjct: 31 IQDKIGYPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHCVRRLRGG 77
Score = 50.4 bits (119), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 24/29 (82%), Positives = 25/29 (86%)
Query: 51 VESSDTIDNVKAKIQDKKGTPPDQQRQIF 79
VE SDTI+NVKAKIQDK G PPDQQR IF
Sbjct: 18 VEPSDTIENVKAKIQDKIGYPPDQQRLIF 46
>pdb|2O6V|D Chain D, Crystal Structure And Solution Nmr Studies Of
Lys48-Linked Tetraubiquitin At Neutral Ph
pdb|2O6V|H Chain H, Crystal Structure And Solution Nmr Studies Of
Lys48-Linked Tetraubiquitin At Neutral Ph
Length = 76
Score = 62.8 bits (151), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 33/47 (70%), Positives = 36/47 (76%), Gaps = 1/47 (2%)
Query: 1 IEDKEEILRDQQRFIFAGKRLEDGRTLVDYNIH-GSTLHSVRRFRGG 46
I+DKE I DQQR IFAG++LEDGRTL DYNI STLH V R RGG
Sbjct: 30 IQDKEGIPPDQQRLIFAGRQLEDGRTLSDYNIQRESTLHLVLRLRGG 76
Score = 52.4 bits (124), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 24/29 (82%), Positives = 26/29 (89%)
Query: 51 VESSDTIDNVKAKIQDKKGTPPDQQRQIF 79
VE SDTI+NVKAKIQDK+G PPDQQR IF
Sbjct: 17 VEPSDTIENVKAKIQDKEGIPPDQQRLIF 45
>pdb|1C3T|A Chain A, Rotamer Strain As A Determinant Of Protein Structural
Specificity
Length = 76
Score = 62.8 bits (151), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 32/47 (68%), Positives = 36/47 (76%), Gaps = 1/47 (2%)
Query: 1 IEDKEEILRDQQRFIFAGKRLEDGRTLVDYNIHG-STLHSVRRFRGG 46
I+DKE I DQQR IFAGK+LEDGRTL DYN+ ST+H V R RGG
Sbjct: 30 IQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNLQKESTIHLVLRLRGG 76
Score = 50.1 bits (118), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 21/33 (63%), Positives = 28/33 (84%)
Query: 47 MQIFVESSDTIDNVKAKIQDKKGTPPDQQRQIF 79
+ + +E SDT++N+KAKIQDK+G PPDQQR IF
Sbjct: 13 LTVELEPSDTVENLKAKIQDKEGIPPDQQRLIF 45
>pdb|2K6D|B Chain B, Cin85 Sh3-C Domain In Complex With Ubiquitin
pdb|2KJH|B Chain B, Nmr Based Structural Model Of The Ubch8-Ubiquitin
Complex
pdb|4DHJ|D Chain D, The Structure Of A Ceotub1 Ubiquitin Aldehyde Ubc13~ub
Complex
pdb|4DHJ|H Chain H, The Structure Of A Ceotub1 Ubiquitin Aldehyde Ubc13~ub
Complex
pdb|4DHZ|E Chain E, The Structure Of HCEOTUB1-Ubiquitin Aldehyde-Ubc13~ub
Length = 76
Score = 62.8 bits (151), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 33/46 (71%), Positives = 35/46 (76%), Gaps = 1/46 (2%)
Query: 1 IEDKEEILRDQQRFIFAGKRLEDGRTLVDYNIHG-STLHSVRRFRG 45
I+DKE I DQQR IFAGK+LEDGRTL DYNI STLH V R RG
Sbjct: 30 IQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRG 75
Score = 52.4 bits (124), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 24/29 (82%), Positives = 26/29 (89%)
Query: 51 VESSDTIDNVKAKIQDKKGTPPDQQRQIF 79
VE SDTI+NVKAKIQDK+G PPDQQR IF
Sbjct: 17 VEPSDTIENVKAKIQDKEGIPPDQQRLIF 45
>pdb|1XD3|B Chain B, Crystal Structure Of Uchl3-Ubvme Complex
pdb|1XD3|D Chain D, Crystal Structure Of Uchl3-Ubvme Complex
pdb|2IBI|B Chain B, Covalent Ubiquitin-Usp2 Complex
pdb|2J7Q|B Chain B, Crystal Structure Of The Ubiquitin-Specific Protease
Encoded By Murine Cytomegalovirus Tegument Protein M48
In Complex With A Ubquitin-Based Suicide Substrate
pdb|2J7Q|D Chain D, Crystal Structure Of The Ubiquitin-Specific Protease
Encoded By Murine Cytomegalovirus Tegument Protein M48
In Complex With A Ubquitin-Based Suicide Substrate
pdb|3C0R|B Chain B, Structure Of Ovarian Tumor (Otu) Domain In Complex With
Ubiquitin
pdb|3C0R|D Chain D, Structure Of Ovarian Tumor (Otu) Domain In Complex With
Ubiquitin
pdb|3BY4|B Chain B, Structure Of Ovarian Tumor (Otu) Domain In Complex With
Ubiquitin
pdb|3I3T|B Chain B, Crystal Structure Of Covalent Ubiquitin-usp21 Complex
pdb|3I3T|D Chain D, Crystal Structure Of Covalent Ubiquitin-usp21 Complex
pdb|3I3T|F Chain F, Crystal Structure Of Covalent Ubiquitin-usp21 Complex
pdb|3I3T|H Chain H, Crystal Structure Of Covalent Ubiquitin-usp21 Complex
pdb|3IHP|C Chain C, Covalent Ubiquitin-Usp5 Complex
pdb|3IHP|D Chain D, Covalent Ubiquitin-Usp5 Complex
pdb|3IFW|B Chain B, Crystal Structure Of The S18y Variant Of Ubiquitin
Carboxy T Hydrolase L1 Bound To Ubiquitin
Vinylmethylester.
pdb|3KVF|B Chain B, Crystal Structure Of The I93m Mutant Of Ubiquitin
Carboxy Te Hydrolase L1 Bound To Ubiquitin
Vinylmethylester
pdb|3KW5|B Chain B, Crystal Structure Of Ubiquitin Carboxy Terminal
Hydrolase L1 Ubiquitin Vinylmethylester
pdb|3PT2|B Chain B, Structure Of A Viral Otu Domain Protease Bound To
Ubiquitin
pdb|3PRM|B Chain B, Structural Analysis Of A Viral Otu Domain Protease From
The Crimean- Congo Hemorrhagic Fever Virus In Complex
With Human Ubiquitin
pdb|3PRM|D Chain D, Structural Analysis Of A Viral Otu Domain Protease From
The Crimean- Congo Hemorrhagic Fever Virus In Complex
With Human Ubiquitin
pdb|3PRP|B Chain B, Structural Analysis Of A Viral Otu Domain Protease From
The Crimean- Congo Hemorrhagic Fever Virus In Complex
With Human Ubiquitin
pdb|3PRP|D Chain D, Structural Analysis Of A Viral Otu Domain Protease From
The Crimean- Congo Hemorrhagic Fever Virus In Complex
With Human Ubiquitin
pdb|3PHW|B Chain B, Otu Domain Of Crimean Congo Hemorrhagic Fever Virus In
Complex With Ubiquitin
pdb|3PHW|D Chain D, Otu Domain Of Crimean Congo Hemorrhagic Fever Virus In
Complex With Ubiquitin
pdb|3PHW|F Chain F, Otu Domain Of Crimean Congo Hemorrhagic Fever Virus In
Complex With Ubiquitin
pdb|3PHW|H Chain H, Otu Domain Of Crimean Congo Hemorrhagic Fever Virus In
Complex With Ubiquitin
pdb|4HXD|A Chain A, Diversity Of Ubiquitin And Isg15 Specificity Amongst
Nairoviruses Viral Ovarian Tumor Domain Proteases
pdb|4HXD|C Chain C, Diversity Of Ubiquitin And Isg15 Specificity Amongst
Nairoviruses Viral Ovarian Tumor Domain Proteases
Length = 75
Score = 62.4 bits (150), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 33/46 (71%), Positives = 35/46 (76%), Gaps = 1/46 (2%)
Query: 1 IEDKEEILRDQQRFIFAGKRLEDGRTLVDYNIHG-STLHSVRRFRG 45
I+DKE I DQQR IFAGK+LEDGRTL DYNI STLH V R RG
Sbjct: 30 IQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRG 75
Score = 52.4 bits (124), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 24/29 (82%), Positives = 26/29 (89%)
Query: 51 VESSDTIDNVKAKIQDKKGTPPDQQRQIF 79
VE SDTI+NVKAKIQDK+G PPDQQR IF
Sbjct: 17 VEPSDTIENVKAKIQDKEGIPPDQQRLIF 45
>pdb|1CMX|B Chain B, Structural Basis For The Specificity Of Ubiquitin C-
Terminal Hydrolases
pdb|1CMX|D Chain D, Structural Basis For The Specificity Of Ubiquitin C-
Terminal Hydrolases
pdb|1NBF|C Chain C, Crystal Structure Of A Ubp-Family Deubiquitinating
Enzyme In Isolation And In Complex With Ubiquitin
Aldehyde
pdb|1NBF|D Chain D, Crystal Structure Of A Ubp-Family Deubiquitinating
Enzyme In Isolation And In Complex With Ubiquitin
Aldehyde
pdb|2AYO|B Chain B, Structure Of Usp14 Bound To Ubquitin Aldehyde
pdb|2WDT|B Chain B, Crystal Structure Of Plasmodium Falciparum Uchl3 In
Complex With The Suicide Inhibitor Ubvme
pdb|2WDT|D Chain D, Crystal Structure Of Plasmodium Falciparum Uchl3 In
Complex With The Suicide Inhibitor Ubvme
pdb|3MHS|D Chain D, Structure Of The Saga Ubp8SGF11SUS1SGF73 DUB MODULE
BOUND Ubiquitin Aldehyde
pdb|3O65|B Chain B, Crystal Structure Of A Josephin-Ubiquitin Complex:
Evolutionary Restraints On Ataxin-3 Deubiquitinating
Activity
pdb|3O65|D Chain D, Crystal Structure Of A Josephin-Ubiquitin Complex:
Evolutionary Restraints On Ataxin-3 Deubiquitinating
Activity
pdb|3O65|F Chain F, Crystal Structure Of A Josephin-Ubiquitin Complex:
Evolutionary Restraints On Ataxin-3 Deubiquitinating
Activity
pdb|3O65|H Chain H, Crystal Structure Of A Josephin-Ubiquitin Complex:
Evolutionary Restraints On Ataxin-3 Deubiquitinating
Activity
pdb|3TMP|B Chain B, The Catalytic Domain Of Human Deubiquitinase Duba In
Complex With Ubiquitin Aldehyde
pdb|3TMP|D Chain D, The Catalytic Domain Of Human Deubiquitinase Duba In
Complex With Ubiquitin Aldehyde
pdb|3TMP|F Chain F, The Catalytic Domain Of Human Deubiquitinase Duba In
Complex With Ubiquitin Aldehyde
pdb|3TMP|H Chain H, The Catalytic Domain Of Human Deubiquitinase Duba In
Complex With Ubiquitin Aldehyde
pdb|4DHJ|B Chain B, The Structure Of A Ceotub1 Ubiquitin Aldehyde Ubc13~ub
Complex
pdb|4DHJ|F Chain F, The Structure Of A Ceotub1 Ubiquitin Aldehyde Ubc13~ub
Complex
pdb|4DHJ|J Chain J, The Structure Of A Ceotub1 Ubiquitin Aldehyde Ubc13~ub
Complex
pdb|4DHJ|M Chain M, The Structure Of A Ceotub1 Ubiquitin Aldehyde Ubc13~ub
Complex
pdb|4DHZ|B Chain B, The Structure Of HCEOTUB1-Ubiquitin Aldehyde-Ubc13~ub
pdb|4IUM|B Chain B, Equine Arteritis Virus Papain-like Protease 2 (plp2)
Covalently Bound To Ubiquitin
pdb|3ZNH|B Chain B, Crimean Congo Hemorrhagic Fever Virus Otu Domain In
Complex With Ubiquitin-propargyl
Length = 76
Score = 62.4 bits (150), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 33/46 (71%), Positives = 35/46 (76%), Gaps = 1/46 (2%)
Query: 1 IEDKEEILRDQQRFIFAGKRLEDGRTLVDYNIHG-STLHSVRRFRG 45
I+DKE I DQQR IFAGK+LEDGRTL DYNI STLH V R RG
Sbjct: 30 IQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRG 75
Score = 52.4 bits (124), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 24/29 (82%), Positives = 26/29 (89%)
Query: 51 VESSDTIDNVKAKIQDKKGTPPDQQRQIF 79
VE SDTI+NVKAKIQDK+G PPDQQR IF
Sbjct: 17 VEPSDTIENVKAKIQDKEGIPPDQQRLIF 45
>pdb|3RUL|A Chain A, New Strategy To Analyze Structures Of
Glycopeptide-Target Complexes
pdb|3RUL|B Chain B, New Strategy To Analyze Structures Of
Glycopeptide-Target Complexes
pdb|3RUL|C Chain C, New Strategy To Analyze Structures Of
Glycopeptide-Target Complexes
pdb|3RUL|D Chain D, New Strategy To Analyze Structures Of
Glycopeptide-Target Complexes
pdb|3VFK|A Chain A, The Structure Of Monodechloro-Teicoplanin In Complex
With Its Ligand, Using Ubiquitin As A Ligand Carrier
Length = 79
Score = 62.4 bits (150), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 33/46 (71%), Positives = 35/46 (76%), Gaps = 1/46 (2%)
Query: 1 IEDKEEILRDQQRFIFAGKRLEDGRTLVDYNIHG-STLHSVRRFRG 45
I+DKE I DQQR IFAGK+LEDGRTL DYNI STLH V R RG
Sbjct: 30 IQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRG 75
Score = 52.0 bits (123), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 24/29 (82%), Positives = 26/29 (89%)
Query: 51 VESSDTIDNVKAKIQDKKGTPPDQQRQIF 79
VE SDTI+NVKAKIQDK+G PPDQQR IF
Sbjct: 17 VEPSDTIENVKAKIQDKEGIPPDQQRLIF 45
>pdb|2XK5|B Chain B, Crystal Structure Of K6-Linked Diubiquitin
Length = 76
Score = 62.4 bits (150), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 33/47 (70%), Positives = 35/47 (74%), Gaps = 1/47 (2%)
Query: 1 IEDKEEILRDQQRFIFAGKRLEDGRTLVDYNIHG-STLHSVRRFRGG 46
I+DKE I QQR IFAGK+LEDGRTL DYNI STLH V R RGG
Sbjct: 30 IQDKEGIPPQQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76
Score = 49.7 bits (117), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 23/29 (79%), Positives = 25/29 (86%)
Query: 51 VESSDTIDNVKAKIQDKKGTPPDQQRQIF 79
VE SDTI+NVKAKIQDK+G PP QQR IF
Sbjct: 17 VEPSDTIENVKAKIQDKEGIPPQQQRLIF 45
>pdb|2O6V|B Chain B, Crystal Structure And Solution Nmr Studies Of
Lys48-Linked Tetraubiquitin At Neutral Ph
pdb|2O6V|F Chain F, Crystal Structure And Solution Nmr Studies Of
Lys48-Linked Tetraubiquitin At Neutral Ph
Length = 76
Score = 62.0 bits (149), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 33/47 (70%), Positives = 35/47 (74%), Gaps = 1/47 (2%)
Query: 1 IEDKEEILRDQQRFIFAGKRLEDGRTLVDYNIH-GSTLHSVRRFRGG 46
I+DKE I DQQR IFAG +LEDGRTL DYNI STLH V R RGG
Sbjct: 30 IQDKEGIPPDQQRLIFAGXQLEDGRTLSDYNIQRESTLHLVLRLRGG 76
Score = 52.4 bits (124), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 24/29 (82%), Positives = 26/29 (89%)
Query: 51 VESSDTIDNVKAKIQDKKGTPPDQQRQIF 79
VE SDTI+NVKAKIQDK+G PPDQQR IF
Sbjct: 17 VEPSDTIENVKAKIQDKEGIPPDQQRLIF 45
>pdb|3H7S|A Chain A, Crystal Structures Of K63-Linked Di- And Tri-Ubiquitin
Reveal A Highly Extended Chain Architecture
pdb|3H7S|B Chain B, Crystal Structures Of K63-Linked Di- And Tri-Ubiquitin
Reveal A Highly Extended Chain Architecture
Length = 76
Score = 62.0 bits (149), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 33/47 (70%), Positives = 35/47 (74%), Gaps = 2/47 (4%)
Query: 1 IEDKEEILRDQQRFIFAGKRLEDGRTLVDYNIHG--STLHSVRRFRG 45
I+DKE I DQQR IFAGK+LEDGRTL DYNI STLH V R RG
Sbjct: 30 IQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKRESTLHLVLRLRG 76
Score = 52.4 bits (124), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 24/29 (82%), Positives = 26/29 (89%)
Query: 51 VESSDTIDNVKAKIQDKKGTPPDQQRQIF 79
VE SDTI+NVKAKIQDK+G PPDQQR IF
Sbjct: 17 VEPSDTIENVKAKIQDKEGIPPDQQRLIF 45
>pdb|3K9O|B Chain B, The Crystal Structure Of E2-25k And Ubb+1 Complex
Length = 96
Score = 62.0 bits (149), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 33/46 (71%), Positives = 35/46 (76%), Gaps = 1/46 (2%)
Query: 1 IEDKEEILRDQQRFIFAGKRLEDGRTLVDYNIHG-STLHSVRRFRG 45
I+DKE I DQQR IFAGK+LEDGRTL DYNI STLH V R RG
Sbjct: 31 IQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRG 76
Score = 53.5 bits (127), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 29/47 (61%), Positives = 31/47 (65%), Gaps = 12/47 (25%)
Query: 46 GMQIFV------------ESSDTIDNVKAKIQDKKGTPPDQQRQIFW 80
GMQIFV E SDTI+NVKAKIQDK+G PPDQQR IF
Sbjct: 1 GMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFA 47
>pdb|4II2|B Chain B, Crystal Structure Of Ubiquitin Activating Enzyme 1
(uba1) In Complex With The Ub E2 Ubc4, Ubiquitin, And
Atp/mg
Length = 83
Score = 61.6 bits (148), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 32/47 (68%), Positives = 36/47 (76%), Gaps = 1/47 (2%)
Query: 1 IEDKEEILRDQQRFIFAGKRLEDGRTLVDYNIH-GSTLHSVRRFRGG 46
I+D+E I DQQR IFAG++LEDGRTL DYNI STLH V R RGG
Sbjct: 37 IQDREGIPPDQQRLIFAGRQLEDGRTLADYNIQRESTLHLVLRLRGG 83
Score = 53.1 bits (126), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 23/29 (79%), Positives = 27/29 (93%)
Query: 51 VESSDTIDNVKAKIQDKKGTPPDQQRQIF 79
VESSDTIDNV+A+IQD++G PPDQQR IF
Sbjct: 24 VESSDTIDNVRARIQDREGIPPDQQRLIF 52
>pdb|2KDI|A Chain A, Solution Structure Of A UbiquitinUIM FUSION PROTEIN
Length = 114
Score = 61.2 bits (147), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 33/47 (70%), Positives = 36/47 (76%), Gaps = 1/47 (2%)
Query: 1 IEDKEEILRDQQRFIFAGKRLEDGRTLVDYNIH-GSTLHSVRRFRGG 46
I+DKE I DQQR I+AGK+LEDGRTL DYNI STLH V R RGG
Sbjct: 39 IQDKEGIPPDQQRLIWAGKQLEDGRTLSDYNIQRESTLHLVLRLRGG 85
Score = 52.4 bits (124), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 24/28 (85%), Positives = 26/28 (92%)
Query: 51 VESSDTIDNVKAKIQDKKGTPPDQQRQI 78
VESSDTIDNVK+KIQDK+G PPDQQR I
Sbjct: 26 VESSDTIDNVKSKIQDKEGIPPDQQRLI 53
>pdb|4GSW|A Chain A, Crystal Structure Of Ubiquitin From Entamoeba
Histolytica To 2.15 Angstrom
pdb|4GSW|B Chain B, Crystal Structure Of Ubiquitin From Entamoeba
Histolytica To 2.15 Angstrom
pdb|4GU2|A Chain A, Crystal Structure Of Ubiquitin From Entamoeba
Histolytica To 1.35 Angstrom
Length = 80
Score = 60.8 bits (146), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 31/47 (65%), Positives = 36/47 (76%), Gaps = 1/47 (2%)
Query: 1 IEDKEEILRDQQRFIFAGKRLEDGRTLVDYNIHG-STLHSVRRFRGG 46
I++KE I DQQR IFAGK+LE+G+TL DYNI STLH V R RGG
Sbjct: 33 IQEKEGIPPDQQRLIFAGKQLEEGKTLSDYNIQKESTLHLVLRLRGG 79
Score = 46.2 bits (108), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 20/29 (68%), Positives = 25/29 (86%)
Query: 51 VESSDTIDNVKAKIQDKKGTPPDQQRQIF 79
VE +D+ID +KAKIQ+K+G PPDQQR IF
Sbjct: 20 VEPNDSIDAIKAKIQEKEGIPPDQQRLIF 48
>pdb|1OGW|A Chain A, Synthetic Ubiquitin With Fluoro-Leu At 50 And 67
Length = 76
Score = 60.5 bits (145), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 32/47 (68%), Positives = 34/47 (72%), Gaps = 1/47 (2%)
Query: 1 IEDKEEILRDQQRFIFAGKRLEDGRTLVDYNIHG-STLHSVRRFRGG 46
I+DKE I DQQR IFAGK+ EDGRTL DYNI ST H V R RGG
Sbjct: 30 IQDKEGIPPDQQRLIFAGKQXEDGRTLSDYNIQKESTXHLVLRLRGG 76
Score = 52.0 bits (123), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 24/29 (82%), Positives = 26/29 (89%)
Query: 51 VESSDTIDNVKAKIQDKKGTPPDQQRQIF 79
VE SDTI+NVKAKIQDK+G PPDQQR IF
Sbjct: 17 VEPSDTIENVKAKIQDKEGIPPDQQRLIF 45
>pdb|3V6C|B Chain B, Crystal Structure Of Usp2 In Complex With Mutated
Ubiquitin
Length = 91
Score = 60.5 bits (145), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 32/45 (71%), Positives = 34/45 (75%), Gaps = 1/45 (2%)
Query: 1 IEDKEEILRDQQRFIFAGKRLEDGRTLVDYNIHG-STLHSVRRFR 44
I+DKE I DQQR IFAGK+LEDGRTL DYNI STLH V R R
Sbjct: 47 IQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLR 91
Score = 56.2 bits (134), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 30/49 (61%), Positives = 32/49 (65%), Gaps = 12/49 (24%)
Query: 44 RGGMQIFV------------ESSDTIDNVKAKIQDKKGTPPDQQRQIFW 80
RG MQIFV E SDTI+NVKAKIQDK+G PPDQQR IF
Sbjct: 15 RGSMQIFVNTLTGTHITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFA 63
>pdb|2K25|A Chain A, Automated Nmr Structure Of The Ubb By Fapsy
pdb|2KX0|A Chain A, The Solution Structure Of Ubb+1, Frameshift Mutant Of
Ubiquitin B
Length = 103
Score = 60.5 bits (145), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 32/46 (69%), Positives = 35/46 (76%), Gaps = 1/46 (2%)
Query: 1 IEDKEEILRDQQRFIFAGKRLEDGRTLVDYNIHG-STLHSVRRFRG 45
I+DKE I DQQR IFAGK+LEDGRTL +YNI STLH V R RG
Sbjct: 38 IQDKEGIPPDQQRLIFAGKQLEDGRTLSEYNIQKESTLHLVLRLRG 83
Score = 55.5 bits (132), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 30/49 (61%), Positives = 32/49 (65%), Gaps = 12/49 (24%)
Query: 44 RGGMQIFV------------ESSDTIDNVKAKIQDKKGTPPDQQRQIFW 80
RG MQIFV E SDTI+NVKAKIQDK+G PPDQQR IF
Sbjct: 6 RGSMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFA 54
>pdb|3V6E|B Chain B, Crystal Structure Of Usp2 And A Mutant Form Of Ubiquitin
Length = 91
Score = 60.5 bits (145), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 32/45 (71%), Positives = 34/45 (75%), Gaps = 1/45 (2%)
Query: 1 IEDKEEILRDQQRFIFAGKRLEDGRTLVDYNIHG-STLHSVRRFR 44
I+DKE I DQQR IFAGK+LEDGRTL DYNI STLH V R R
Sbjct: 47 IQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLR 91
Score = 56.2 bits (134), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 30/49 (61%), Positives = 32/49 (65%), Gaps = 12/49 (24%)
Query: 44 RGGMQIFV------------ESSDTIDNVKAKIQDKKGTPPDQQRQIFW 80
RG MQIFV E SDTI+NVKAKIQDK+G PPDQQR IF
Sbjct: 15 RGSMQIFVNTLSGKHITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFA 63
>pdb|3AI5|A Chain A, Crystal Structure Of Yeast Enhanced Green Fluorescent
Protein- Ubiquitin Fusion Protein
Length = 307
Score = 59.7 bits (143), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 32/45 (71%), Positives = 34/45 (75%), Gaps = 1/45 (2%)
Query: 1 IEDKEEILRDQQRFIFAGKRLEDGRTLVDYNIHG-STLHSVRRFR 44
I+DKE I DQQR IFAGK+LEDGRTL DYNI STLH V R R
Sbjct: 263 IQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLR 307
Score = 53.5 bits (127), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 29/47 (61%), Positives = 31/47 (65%), Gaps = 12/47 (25%)
Query: 45 GGMQIFV------------ESSDTIDNVKAKIQDKKGTPPDQQRQIF 79
G MQIFV E SDTI+NVKAKIQDK+G PPDQQR IF
Sbjct: 232 GSMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIF 278
>pdb|2GBR|A Chain A, Crystal Structure Of The 35-36 Moad Insertion Mutant Of
Ubiquitin
pdb|2GBR|B Chain B, Crystal Structure Of The 35-36 Moad Insertion Mutant Of
Ubiquitin
pdb|2GBR|C Chain C, Crystal Structure Of The 35-36 Moad Insertion Mutant Of
Ubiquitin
Length = 81
Score = 58.9 bits (141), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 34/52 (65%), Positives = 36/52 (69%), Gaps = 6/52 (11%)
Query: 1 IEDKE-----EILRDQQRFIFAGKRLEDGRTLVDYNIHG-STLHSVRRFRGG 46
I+DKE I DQQR IFAGK+LEDGRTL DYNI STLH V R RGG
Sbjct: 30 IQDKEGRWALAIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 81
Score = 45.8 bits (107), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 24/34 (70%), Positives = 26/34 (76%), Gaps = 5/34 (14%)
Query: 51 VESSDTIDNVKAKIQDKKG-----TPPDQQRQIF 79
VE SDTI+NVKAKIQDK+G PPDQQR IF
Sbjct: 17 VEPSDTIENVKAKIQDKEGRWALAIPPDQQRLIF 50
>pdb|4HK2|A Chain A, U7ub25.2540
pdb|4HK2|B Chain B, U7ub25.2540
pdb|4HK2|C Chain C, U7ub25.2540
pdb|4HK2|D Chain D, U7ub25.2540
Length = 78
Score = 58.9 bits (141), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 33/47 (70%), Positives = 34/47 (72%), Gaps = 1/47 (2%)
Query: 1 IEDKEEILRDQQRFIFAGKRLEDGRTLVDYNIHG-STLHSVRRFRGG 46
I+DK I DQQ IFAGKRLEDGRTL DYNI STL VRR RGG
Sbjct: 32 IQDKLGIPPDQQWLIFAGKRLEDGRTLSDYNIQKESTLRGVRRLRGG 78
Score = 48.9 bits (115), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 28/52 (53%), Positives = 30/52 (57%), Gaps = 16/52 (30%)
Query: 45 GGMQIFV------------ESSDTIDNVKAKIQDKKGTPPDQQRQIFWFVFG 84
G MQIFV E SDTI+NVKAKIQDK G PPDQQ W +F
Sbjct: 1 GSMQIFVKFRTGKTYTLEVEPSDTIENVKAKIQDKLGIPPDQQ----WLIFA 48
>pdb|3LDZ|F Chain F, Crystal Structure Of Human Stam1 Vhs Domain In Complex
With Ubiquitin
pdb|3LDZ|E Chain E, Crystal Structure Of Human Stam1 Vhs Domain In Complex
With Ubiquitin
pdb|3LDZ|G Chain G, Crystal Structure Of Human Stam1 Vhs Domain In Complex
With Ubiquitin
Length = 73
Score = 58.5 bits (140), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 31/44 (70%), Positives = 33/44 (75%), Gaps = 1/44 (2%)
Query: 1 IEDKEEILRDQQRFIFAGKRLEDGRTLVDYNIHG-STLHSVRRF 43
I+DKE I DQQR IFAGK+LEDGRTL DYNI STLH V R
Sbjct: 30 IQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRL 73
Score = 52.4 bits (124), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 24/29 (82%), Positives = 26/29 (89%)
Query: 51 VESSDTIDNVKAKIQDKKGTPPDQQRQIF 79
VE SDTI+NVKAKIQDK+G PPDQQR IF
Sbjct: 17 VEPSDTIENVKAKIQDKEGIPPDQQRLIF 45
>pdb|2GBM|A Chain A, Crystal Structure Of The 35-36 8 Glycine Insertion
Mutant Of Ubiquitin
pdb|2GBM|B Chain B, Crystal Structure Of The 35-36 8 Glycine Insertion
Mutant Of Ubiquitin
pdb|2GBM|C Chain C, Crystal Structure Of The 35-36 8 Glycine Insertion
Mutant Of Ubiquitin
pdb|2GBM|D Chain D, Crystal Structure Of The 35-36 8 Glycine Insertion
Mutant Of Ubiquitin
pdb|2GBN|A Chain A, Crystal Structure Of The 35-36 8 Glycine Insertion
Mutant Of Ubiquitin
Length = 84
Score = 58.5 bits (140), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 29/38 (76%), Positives = 30/38 (78%), Gaps = 1/38 (2%)
Query: 10 DQQRFIFAGKRLEDGRTLVDYNIHG-STLHSVRRFRGG 46
DQQR IFAGK+LEDGRTL DYNI STLH V R RGG
Sbjct: 47 DQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 84
Score = 42.0 bits (97), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 24/37 (64%), Positives = 26/37 (70%), Gaps = 8/37 (21%)
Query: 51 VESSDTIDNVKAKIQDKKGT--------PPDQQRQIF 79
VE SDTI+NVKAKIQDK+G PPDQQR IF
Sbjct: 17 VEPSDTIENVKAKIQDKEGGGGGGGGGIPPDQQRLIF 53
>pdb|3ONS|A Chain A, Crystal Structure Of Human Ubiquitin In A New Crystal
Form
Length = 72
Score = 57.8 bits (138), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 31/43 (72%), Positives = 33/43 (76%), Gaps = 1/43 (2%)
Query: 1 IEDKEEILRDQQRFIFAGKRLEDGRTLVDYNIHG-STLHSVRR 42
I+DKE I DQQR IFAGK+LEDGRTL DYNI STLH V R
Sbjct: 30 IQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLR 72
Score = 52.0 bits (123), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 24/29 (82%), Positives = 26/29 (89%)
Query: 51 VESSDTIDNVKAKIQDKKGTPPDQQRQIF 79
VE SDTI+NVKAKIQDK+G PPDQQR IF
Sbjct: 17 VEPSDTIENVKAKIQDKEGIPPDQQRLIF 45
>pdb|3U5C|FF Chain f, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome A
Length = 152
Score = 56.6 bits (135), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 30/41 (73%), Positives = 32/41 (78%), Gaps = 1/41 (2%)
Query: 1 IEDKEEILRDQQRFIFAGKRLEDGRTLVDYNIHG-STLHSV 40
I+DKE I DQQR IFAGK+LEDGRTL DYNI STLH V
Sbjct: 30 IQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 70
Score = 55.1 bits (131), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 25/29 (86%), Positives = 27/29 (93%)
Query: 51 VESSDTIDNVKAKIQDKKGTPPDQQRQIF 79
VESSDTIDNVK+KIQDK+G PPDQQR IF
Sbjct: 17 VESSDTIDNVKSKIQDKEGIPPDQQRLIF 45
>pdb|1ZW7|A Chain A, Elimination Of The C-Cap In Ubiquitin Structure,
Dynamics And Thermodynamic Consequences
Length = 82
Score = 56.2 bits (134), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 30/47 (63%), Positives = 32/47 (68%), Gaps = 1/47 (2%)
Query: 1 IEDKEEILRDQQRFIFAGKRLEDGRTLVDYNIHG-STLHSVRRFRGG 46
I+ I DQQ IFAGK+LEDGRTL DYNI STLH V R RGG
Sbjct: 30 IQAAPGIPPDQQELIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76
Score = 47.8 bits (112), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 24/41 (58%), Positives = 28/41 (68%), Gaps = 1/41 (2%)
Query: 40 VRRFRGG-MQIFVESSDTIDNVKAKIQDKKGTPPDQQRQIF 79
V+ G + + VESSDTIDNVK+KIQ G PPDQQ IF
Sbjct: 5 VKTLTGATITLEVESSDTIDNVKSKIQAAPGIPPDQQELIF 45
>pdb|3N3K|B Chain B, The Catalytic Domain Of Usp8 In Complex With A Usp8
Specific Inhibitor
Length = 85
Score = 55.8 bits (133), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 26/36 (72%), Positives = 29/36 (80%)
Query: 1 IEDKEEILRDQQRFIFAGKRLEDGRTLVDYNIHGST 36
I+DKE I DQQR IFAGK+LEDGRTL DYNIH +
Sbjct: 33 IQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIHNHS 68
Score = 52.4 bits (124), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 24/30 (80%), Positives = 26/30 (86%)
Query: 51 VESSDTIDNVKAKIQDKKGTPPDQQRQIFW 80
VE SDTI+NVKAKIQDK+G PPDQQR IF
Sbjct: 20 VEPSDTIENVKAKIQDKEGIPPDQQRLIFA 49
>pdb|2JVC|A Chain A, Nmr Solution Structure Of Ubiquitin Like Protein
Length = 82
Score = 54.3 bits (129), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 28/48 (58%), Positives = 32/48 (66%), Gaps = 1/48 (2%)
Query: 1 IEDKEEILRDQQRFIFAGKRLEDGRTLVDYNIHG-STLHSVRRFRGGM 47
I DKE I DQQR IF GK+LED + DYN+ STLH V R RGG+
Sbjct: 35 IYDKEGIPPDQQRLIFGGKQLEDSNAMSDYNVQKESTLHLVLRLRGGV 82
Score = 44.7 bits (104), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 24/47 (51%), Positives = 29/47 (61%), Gaps = 12/47 (25%)
Query: 45 GGMQIFVES------------SDTIDNVKAKIQDKKGTPPDQQRQIF 79
G MQIFV++ +DT+ VKAKI DK+G PPDQQR IF
Sbjct: 4 GSMQIFVKTLTGKTITIDVDHADTVGAVKAKIYDKEGIPPDQQRLIF 50
>pdb|1GJZ|A Chain A, Solution Structure Of A Dimeric N-Terminal Fragment Of
Human Ubiquitin
pdb|1GJZ|B Chain B, Solution Structure Of A Dimeric N-Terminal Fragment Of
Human Ubiquitin
Length = 53
Score = 53.5 bits (127), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 29/47 (61%), Positives = 31/47 (65%), Gaps = 12/47 (25%)
Query: 45 GGMQIFV------------ESSDTIDNVKAKIQDKKGTPPDQQRQIF 79
G MQIFV E SDTI+NVKAKIQDK+G PPDQQR IF
Sbjct: 1 GSMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIF 47
Score = 33.9 bits (76), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 16/22 (72%), Positives = 18/22 (81%)
Query: 1 IEDKEEILRDQQRFIFAGKRLE 22
I+DKE I DQQR IFAGK+LE
Sbjct: 32 IQDKEGIPPDQQRLIFAGKQLE 53
>pdb|3MTN|B Chain B, Usp21 In Complex With A Ubiquitin-based, Usp21-specific
Inhibitor
pdb|3MTN|D Chain D, Usp21 In Complex With A Ubiquitin-based, Usp21-specific
Inhibitor
Length = 85
Score = 52.8 bits (125), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 25/33 (75%), Positives = 27/33 (81%)
Query: 1 IEDKEEILRDQQRFIFAGKRLEDGRTLVDYNIH 33
I+DKE I DQQR IFAGK+LEDGRTL DYNI
Sbjct: 33 IQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQ 65
Score = 51.2 bits (121), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 24/29 (82%), Positives = 26/29 (89%)
Query: 51 VESSDTIDNVKAKIQDKKGTPPDQQRQIF 79
VE SDTI+NVKAKIQDK+G PPDQQR IF
Sbjct: 20 VEPSDTIENVKAKIQDKEGIPPDQQRLIF 48
>pdb|4I6L|B Chain B, Crystal Structure Of Otub1 In Complex With Ubiquitin
Variant
Length = 76
Score = 52.4 bits (124), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 27/47 (57%), Positives = 31/47 (65%), Gaps = 12/47 (25%)
Query: 45 GGMQIFV------------ESSDTIDNVKAKIQDKKGTPPDQQRQIF 79
G MQIFV E SDTI+NVKAKIQDK+G PPDQQ+ +F
Sbjct: 1 GSMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQKLLF 47
Score = 52.0 bits (123), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 27/45 (60%), Positives = 33/45 (73%), Gaps = 1/45 (2%)
Query: 1 IEDKEEILRDQQRFIFAGKRLEDGRTLVDYNIHGST-LHSVRRFR 44
I+DKE I DQQ+ +FA K+LEDGRTL DYNIH + L+ V R R
Sbjct: 32 IQDKEGIPPDQQKLLFARKQLEDGRTLSDYNIHKESFLYLVLRLR 76
>pdb|1BT0|A Chain A, Structure Of Ubiquitin-Like Protein, Rub1
Length = 76
Score = 49.3 bits (116), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 26/47 (55%), Positives = 31/47 (65%), Gaps = 1/47 (2%)
Query: 1 IEDKEEILRDQQRFIFAGKRLEDGRTLVDYNIH-GSTLHSVRRFRGG 46
+E+KE I QQR I+AGK+L D +T DYNI GS LH V RGG
Sbjct: 30 VEEKEGIPPVQQRLIYAGKQLADDKTAKDYNIEGGSVLHLVLALRGG 76
Score = 39.7 bits (91), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 26/33 (78%)
Query: 47 MQIFVESSDTIDNVKAKIQDKKGTPPDQQRQIF 79
++I +E +DTID +K ++++K+G PP QQR I+
Sbjct: 13 IEIDIEPTDTIDRIKERVEEKEGIPPVQQRLIY 45
>pdb|3DBH|I Chain I, Structural Dissection Of A Gating Mechanism Preventing
Misactivation Of Ubiquitin By Nedd8's E1 (Appbp1-
Uba3arg190ala-Nedd8ala72arg)
pdb|3DBH|J Chain J, Structural Dissection Of A Gating Mechanism Preventing
Misactivation Of Ubiquitin By Nedd8's E1 (Appbp1-
Uba3arg190ala-Nedd8ala72arg)
pdb|3DBH|K Chain K, Structural Dissection Of A Gating Mechanism Preventing
Misactivation Of Ubiquitin By Nedd8's E1 (Appbp1-
Uba3arg190ala-Nedd8ala72arg)
pdb|3DBH|L Chain L, Structural Dissection Of A Gating Mechanism Preventing
Misactivation Of Ubiquitin By Nedd8's E1 (Appbp1-
Uba3arg190ala-Nedd8ala72arg)
pdb|3DBR|I Chain I, Structural Dissection Of A Gating Mechanism Preventing
Misactivation Of Ubiquitin By Nedd8's E1 (Appbp1-
Uba3arg190gln-Nedd8ala72arg)
pdb|3DBR|J Chain J, Structural Dissection Of A Gating Mechanism Preventing
Misactivation Of Ubiquitin By Nedd8's E1 (Appbp1-
Uba3arg190gln-Nedd8ala72arg)
pdb|3DBR|K Chain K, Structural Dissection Of A Gating Mechanism Preventing
Misactivation Of Ubiquitin By Nedd8's E1 (Appbp1-
Uba3arg190gln-Nedd8ala72arg)
pdb|3DBR|L Chain L, Structural Dissection Of A Gating Mechanism Preventing
Misactivation Of Ubiquitin By Nedd8's E1 (Appbp1-
Uba3arg190gln-Nedd8ala72arg)
Length = 88
Score = 47.8 bits (112), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 24/47 (51%), Positives = 31/47 (65%), Gaps = 1/47 (2%)
Query: 1 IEDKEEILRDQQRFIFAGKRLEDGRTLVDYNI-HGSTLHSVRRFRGG 46
+E+KE I QQR I++GK++ D +T DY I GS LH V R RGG
Sbjct: 42 VEEKEGIPPQQQRLIYSGKQMNDEKTAADYKILGGSVLHLVLRLRGG 88
Score = 38.5 bits (88), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 31/47 (65%), Gaps = 1/47 (2%)
Query: 34 GSTLHSVRRFRGG-MQIFVESSDTIDNVKAKIQDKKGTPPDQQRQIF 79
GS L V+ G ++I +E +D ++ +K ++++K+G PP QQR I+
Sbjct: 11 GSMLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIY 57
>pdb|3DBL|I Chain I, Structural Dissection Of A Gating Mechanism Preventing
Misactivation Of Ubiquitin By Nedd8's E1 (Appbp1-
Uba3arg190wt-Nedd8ala72gln)
pdb|3DBL|J Chain J, Structural Dissection Of A Gating Mechanism Preventing
Misactivation Of Ubiquitin By Nedd8's E1 (Appbp1-
Uba3arg190wt-Nedd8ala72gln)
pdb|3DBL|K Chain K, Structural Dissection Of A Gating Mechanism Preventing
Misactivation Of Ubiquitin By Nedd8's E1 (Appbp1-
Uba3arg190wt-Nedd8ala72gln)
pdb|3DBL|L Chain L, Structural Dissection Of A Gating Mechanism Preventing
Misactivation Of Ubiquitin By Nedd8's E1 (Appbp1-
Uba3arg190wt-Nedd8ala72gln)
Length = 88
Score = 46.2 bits (108), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 23/47 (48%), Positives = 31/47 (65%), Gaps = 1/47 (2%)
Query: 1 IEDKEEILRDQQRFIFAGKRLEDGRTLVDYNI-HGSTLHSVRRFRGG 46
+E+KE I QQR I++GK++ D +T DY I GS LH V + RGG
Sbjct: 42 VEEKEGIPPQQQRLIYSGKQMNDEKTAADYKILGGSVLHLVLQLRGG 88
Score = 38.5 bits (88), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 31/47 (65%), Gaps = 1/47 (2%)
Query: 34 GSTLHSVRRFRGG-MQIFVESSDTIDNVKAKIQDKKGTPPDQQRQIF 79
GS L V+ G ++I +E +D ++ +K ++++K+G PP QQR I+
Sbjct: 11 GSMLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIY 57
>pdb|4HCP|B Chain B, Crystal Structure Of Burkholderia Pseudomallei Effector
Protein Chbp In Complex With Nedd8
Length = 78
Score = 46.2 bits (108), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 23/47 (48%), Positives = 30/47 (63%), Gaps = 1/47 (2%)
Query: 1 IEDKEEILRDQQRFIFAGKRLEDGRTLVDYNI-HGSTLHSVRRFRGG 46
+E+KE I QQR I++GK++ D +T DY I GS LH V RGG
Sbjct: 32 VEEKEGIPPQQQRLIYSGKQMNDEKTAADYKILGGSVLHLVLALRGG 78
Score = 36.2 bits (82), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 30/47 (63%), Gaps = 1/47 (2%)
Query: 34 GSTLHSVRRFRGG-MQIFVESSDTIDNVKAKIQDKKGTPPDQQRQIF 79
+ L V+ G ++I +E +D ++ +K ++++K+G PP QQR I+
Sbjct: 1 AAMLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIY 47
>pdb|1NDD|B Chain B, Structure Of Nedd8
pdb|1NDD|A Chain A, Structure Of Nedd8
pdb|1NDD|C Chain C, Structure Of Nedd8
pdb|1NDD|D Chain D, Structure Of Nedd8
pdb|1R4M|I Chain I, Appbp1-Uba3-Nedd8, An E1-Ubiquitin-Like Protein Complex
pdb|1R4M|J Chain J, Appbp1-Uba3-Nedd8, An E1-Ubiquitin-Like Protein Complex
pdb|1R4M|K Chain K, Appbp1-Uba3-Nedd8, An E1-Ubiquitin-Like Protein Complex
pdb|1R4M|L Chain L, Appbp1-Uba3-Nedd8, An E1-Ubiquitin-Like Protein Complex
pdb|1R4N|I Chain I, Appbp1-Uba3-Nedd8, An E1-Ubiquitin-Like Protein Complex
With Atp
pdb|1R4N|J Chain J, Appbp1-Uba3-Nedd8, An E1-Ubiquitin-Like Protein Complex
With Atp
pdb|1R4N|K Chain K, Appbp1-Uba3-Nedd8, An E1-Ubiquitin-Like Protein Complex
With Atp
pdb|1R4N|L Chain L, Appbp1-Uba3-Nedd8, An E1-Ubiquitin-Like Protein Complex
With Atp
pdb|1XT9|B Chain B, Crystal Structure Of Den1 In Complex With Nedd8
pdb|2KO3|A Chain A, Nedd8 Solution Structure
Length = 76
Score = 45.8 bits (107), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 23/47 (48%), Positives = 30/47 (63%), Gaps = 1/47 (2%)
Query: 1 IEDKEEILRDQQRFIFAGKRLEDGRTLVDYNI-HGSTLHSVRRFRGG 46
+E+KE I QQR I++GK++ D +T DY I GS LH V RGG
Sbjct: 30 VEEKEGIPPQQQRLIYSGKQMNDEKTAADYKILGGSVLHLVLALRGG 76
Score = 36.2 bits (82), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 12/33 (36%), Positives = 25/33 (75%)
Query: 47 MQIFVESSDTIDNVKAKIQDKKGTPPDQQRQIF 79
++I +E +D ++ +K ++++K+G PP QQR I+
Sbjct: 13 IEIDIEPTDKVERIKERVEEKEGIPPQQQRLIY 45
>pdb|3GZN|I Chain I, Structure Of Nedd8-Activating Enzyme In Complex With
Nedd8 And Mln4924
pdb|3GZN|J Chain J, Structure Of Nedd8-Activating Enzyme In Complex With
Nedd8 And Mln4924
Length = 82
Score = 45.8 bits (107), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 23/47 (48%), Positives = 30/47 (63%), Gaps = 1/47 (2%)
Query: 1 IEDKEEILRDQQRFIFAGKRLEDGRTLVDYNI-HGSTLHSVRRFRGG 46
+E+KE I QQR I++GK++ D +T DY I GS LH V RGG
Sbjct: 36 VEEKEGIPPQQQRLIYSGKQMNDEKTAADYKILGGSVLHLVLALRGG 82
Score = 36.2 bits (82), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 12/33 (36%), Positives = 25/33 (75%)
Query: 47 MQIFVESSDTIDNVKAKIQDKKGTPPDQQRQIF 79
++I +E +D ++ +K ++++K+G PP QQR I+
Sbjct: 19 IEIDIEPTDKVERIKERVEEKEGIPPQQQRLIY 51
>pdb|2BKR|B Chain B, Nedd8 Nedp1 Complex
Length = 77
Score = 45.8 bits (107), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 23/47 (48%), Positives = 30/47 (63%), Gaps = 1/47 (2%)
Query: 1 IEDKEEILRDQQRFIFAGKRLEDGRTLVDYNI-HGSTLHSVRRFRGG 46
+E+KE I QQR I++GK++ D +T DY I GS LH V RGG
Sbjct: 31 VEEKEGIPPQQQRLIYSGKQMNDEKTAADYKILGGSVLHLVLALRGG 77
Score = 37.0 bits (84), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 30/46 (65%), Gaps = 1/46 (2%)
Query: 35 STLHSVRRFRGG-MQIFVESSDTIDNVKAKIQDKKGTPPDQQRQIF 79
S L V+ G ++I +E +D ++ +K ++++K+G PP QQR I+
Sbjct: 1 SMLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIY 46
>pdb|2NVU|I Chain I, Structure Of Appbp1-Uba3~nedd8-Nedd8-Mgatp-Ubc12(C111a),
A Trapped Ubiquitin-Like Protein Activation Complex
pdb|2NVU|J Chain J, Structure Of Appbp1-Uba3~nedd8-Nedd8-Mgatp-Ubc12(C111a),
A Trapped Ubiquitin-Like Protein Activation Complex
Length = 81
Score = 45.8 bits (107), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 23/47 (48%), Positives = 30/47 (63%), Gaps = 1/47 (2%)
Query: 1 IEDKEEILRDQQRFIFAGKRLEDGRTLVDYNI-HGSTLHSVRRFRGG 46
+E+KE I QQR I++GK++ D +T DY I GS LH V RGG
Sbjct: 35 VEEKEGIPPQQQRLIYSGKQMNDEKTAADYKILGGSVLHLVLALRGG 81
Score = 38.9 bits (89), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 31/47 (65%), Gaps = 1/47 (2%)
Query: 34 GSTLHSVRRFRGG-MQIFVESSDTIDNVKAKIQDKKGTPPDQQRQIF 79
GS L V+ G ++I +E +D ++ +K ++++K+G PP QQR I+
Sbjct: 4 GSMLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIY 50
>pdb|4F8C|B Chain B, Structure Of The Cif:nedd8 Complex - Yersinia
Pseudotuberculosis Cycle Inhibiting Factor In Complex
With Human Nedd8
pdb|4F8C|D Chain D, Structure Of The Cif:nedd8 Complex - Yersinia
Pseudotuberculosis Cycle Inhibiting Factor In Complex
With Human Nedd8
pdb|4FBJ|B Chain B, Structure Of The Cif:nedd8 Complex - Photorhabdus
Luminescens Cycle Inhibiting Factor In Complex With
Human Nedd8
Length = 88
Score = 45.8 bits (107), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 23/47 (48%), Positives = 30/47 (63%), Gaps = 1/47 (2%)
Query: 1 IEDKEEILRDQQRFIFAGKRLEDGRTLVDYNI-HGSTLHSVRRFRGG 46
+E+KE I QQR I++GK++ D +T DY I GS LH V RGG
Sbjct: 30 VEEKEGIPPQQQRLIYSGKQMNDEKTAADYKILGGSVLHLVLALRGG 76
Score = 36.2 bits (82), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 12/33 (36%), Positives = 25/33 (75%)
Query: 47 MQIFVESSDTIDNVKAKIQDKKGTPPDQQRQIF 79
++I +E +D ++ +K ++++K+G PP QQR I+
Sbjct: 13 IEIDIEPTDKVERIKERVEEKEGIPPQQQRLIY 45
>pdb|3DQV|A Chain A, Structural Insights Into Nedd8 Activation Of Cullin-Ring
Ligases: Conformational Control Of Conjugation
pdb|3DQV|B Chain B, Structural Insights Into Nedd8 Activation Of Cullin-Ring
Ligases: Conformational Control Of Conjugation
Length = 81
Score = 44.3 bits (103), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 23/47 (48%), Positives = 29/47 (61%), Gaps = 1/47 (2%)
Query: 1 IEDKEEILRDQQRFIFAGKRLEDGRTLVDYNIH-GSTLHSVRRFRGG 46
+E+KE I QQR I++GK+ D +T DY I GS LH V RGG
Sbjct: 35 VEEKEGIPPQQQRLIYSGKQXNDEKTAADYKIXGGSVLHLVLALRGG 81
Score = 38.5 bits (88), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 31/47 (65%), Gaps = 1/47 (2%)
Query: 34 GSTLHSVRRFRGG-MQIFVESSDTIDNVKAKIQDKKGTPPDQQRQIF 79
GS L V+ G ++I +E +D ++ +K ++++K+G PP QQR I+
Sbjct: 4 GSXLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIY 50
>pdb|1WX9|A Chain A, Solution Structure Of The N-Terminal Ubiquitin-Like
Domain In The Human Bat3 Protein
Length = 86
Score = 35.0 bits (79), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 24/40 (60%)
Query: 7 ILRDQQRFIFAGKRLEDGRTLVDYNIHGSTLHSVRRFRGG 46
I ++QR I+ G+ L+D + L +YN+ G +H V R G
Sbjct: 43 IPSEKQRLIYQGRVLQDDKKLQEYNVGGKVIHLVERAPSG 82
>pdb|4EEW|A Chain A, Crystal Structure Of The Ubl Domain Of Bag6
pdb|4EEW|B Chain B, Crystal Structure Of The Ubl Domain Of Bag6
Length = 88
Score = 34.7 bits (78), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 23/36 (63%)
Query: 7 ILRDQQRFIFAGKRLEDGRTLVDYNIHGSTLHSVRR 42
I ++QR I+ G+ L+D + L +YN+ G +H V R
Sbjct: 53 IPSEKQRLIYQGRVLQDDKKLQEYNVGGKVIHLVER 88
>pdb|4DWF|A Chain A, Crystal Structure Of A Hla-B Associated Transcript 3
(Bat3) From Homo Sapiens At 1.80 A Resolution
pdb|4DWF|B Chain B, Crystal Structure Of A Hla-B Associated Transcript 3
(Bat3) From Homo Sapiens At 1.80 A Resolution
Length = 90
Score = 34.7 bits (78), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 23/36 (63%)
Query: 7 ILRDQQRFIFAGKRLEDGRTLVDYNIHGSTLHSVRR 42
I ++QR I+ G+ L+D + L +YN+ G +H V R
Sbjct: 41 IPSEKQRLIYQGRVLQDDKKLQEYNVGGKVIHLVER 76
>pdb|2DZI|A Chain A, 2dziSOLUTION STRUCTURE OF THE N-Terminal Ubiquitin-Like
Domain In Human Ubiquitin-Like Protein 4a (Gdx)
Length = 81
Score = 32.7 bits (73), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 20/32 (62%)
Query: 1 IEDKEEILRDQQRFIFAGKRLEDGRTLVDYNI 32
+ +K + QQR +F GK L DG+ L DY+I
Sbjct: 37 VSEKLNVPVRQQRLLFKGKALADGKRLSDYSI 68
>pdb|1J8C|A Chain A, Solution Structure Of The Ubiquitin-Like Domain Of Hplic-2
Length = 125
Score = 30.8 bits (68), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 17/32 (53%), Positives = 21/32 (65%), Gaps = 1/32 (3%)
Query: 10 DQQRFIFAGKRLEDGRTLVDYNIH-GSTLHSV 40
DQ IFAGK L+D TL+ + IH G T+H V
Sbjct: 70 DQLVLIFAGKILKDQDTLIQHGIHDGLTVHLV 101
>pdb|2FAZ|A Chain A, Ubiquitin-Like Domain Of Human Nuclear Zinc Finger
Protein Np95
pdb|2FAZ|B Chain B, Ubiquitin-Like Domain Of Human Nuclear Zinc Finger
Protein Np95
Length = 78
Score = 29.6 bits (65), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 11/21 (52%), Positives = 15/21 (71%)
Query: 12 QRFIFAGKRLEDGRTLVDYNI 32
QR + GK++EDG TL DY +
Sbjct: 45 QRLFYRGKQMEDGHTLFDYEV 65
>pdb|2KLC|A Chain A, Nmr Solution Structure Of Human Ubiquitin-Like Domain Of
Ubiquilin 1, Northeast Structural Genomics Consortium
(Nesg) Target Ht5a
Length = 101
Score = 29.6 bits (65), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 21/44 (47%), Positives = 25/44 (56%), Gaps = 7/44 (15%)
Query: 4 KEEILR------DQQRFIFAGKRLEDGRTLVDYNIH-GSTLHSV 40
KEEI + DQ IFAGK L+D TL + IH G T+H V
Sbjct: 51 KEEISKRFKSHTDQLVLIFAGKILKDQDTLSQHGIHDGLTVHLV 94
>pdb|3M63|B Chain B, Crystal Structure Of Ufd2 In Complex With The
Ubiquitin-Like (Ubl) Domain Of Dsk2
Length = 101
Score = 28.5 bits (62), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 22/31 (70%), Gaps = 1/31 (3%)
Query: 12 QRFIFAGKRLEDGRTLVDYNIH-GSTLHSVR 41
QR I++GK L+D +T+ Y+I G ++H V+
Sbjct: 68 QRLIYSGKILKDDQTVESYHIQDGHSVHLVK 98
>pdb|2BWE|S Chain S, The Crystal Structure Of The Complex Between The Uba And
Ubl Domains Of Dsk2
pdb|2BWE|T Chain T, The Crystal Structure Of The Complex Between The Uba And
Ubl Domains Of Dsk2
pdb|2BWE|U Chain U, The Crystal Structure Of The Complex Between The Uba And
Ubl Domains Of Dsk2
pdb|2BWF|A Chain A, Crystal Sturcture Of The Ubl Domain Of Dsk2 From S.
Cerevisiae
pdb|2BWF|B Chain B, Crystal Sturcture Of The Ubl Domain Of Dsk2 From S.
Cerevisiae
Length = 77
Score = 28.5 bits (62), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 22/31 (70%), Gaps = 1/31 (3%)
Query: 12 QRFIFAGKRLEDGRTLVDYNIH-GSTLHSVR 41
QR I++GK L+D +T+ Y+I G ++H V+
Sbjct: 44 QRLIYSGKILKDDQTVESYHIQDGHSVHLVK 74
>pdb|1WY8|A Chain A, Solution Structure Of The N-Terminal Ubiquitin-Like
Domain In Human Np95ICBP90-Like Ring Finger Protein
(Nirf)
Length = 89
Score = 28.5 bits (62), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 11/21 (52%), Positives = 16/21 (76%)
Query: 12 QRFIFAGKRLEDGRTLVDYNI 32
QR + GK+LE+G TL DY++
Sbjct: 50 QRLFYRGKQLENGYTLFDYDV 70
>pdb|1X1M|A Chain A, Solution Structure Of The N-Terminal Ubiquitin-Like Domain
In Mouse Ubiquitin-Like Protein Sb132
Length = 107
Score = 28.5 bits (62), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 22/34 (64%), Gaps = 1/34 (2%)
Query: 14 FIFAGKRLEDGRTLVDYNIH-GSTLHSVRRFRGG 46
I+ G++L+D +TL Y I GST+H +R+ G
Sbjct: 70 LIYCGRKLKDDQTLDFYGIQPGSTVHVLRKSWSG 103
>pdb|2KNB|A Chain A, Solution Nmr Structure Of The Parkin Ubl Domain In
Complex With The Endophilin-A1 Sh3 Domain
Length = 81
Score = 26.9 bits (58), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 14/43 (32%), Positives = 26/43 (60%), Gaps = 1/43 (2%)
Query: 1 IEDKEEILRDQQRFIFAGKRLEDGRTLVDYNI-HGSTLHSVRR 42
+ ++ + DQ R IFAGK L++ T+ + ++ S +H V+R
Sbjct: 35 VAKRQGVPADQLRVIFAGKELQNHLTVQNCDLEQQSIVHIVQR 77
>pdb|1HVA|A Chain A, Engineering The Zinc Binding Site Of Human Carbonic
Anhydrase Ii: Structure Of The His-94-> Cys Apoenzyme In
A New Crystalline Form
Length = 260
Score = 25.8 bits (55), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 24/50 (48%), Gaps = 5/50 (10%)
Query: 39 SVRRFRGGMQIFVESSDTIDNVKAKIQDKKGTPPDQQRQIFWFVFGWGSL 88
S+R G VE D+ D KA + KG P D ++ F F WGSL
Sbjct: 56 SLRILNNGHAFNVEFDDSQD--KAVL---KGGPLDGTYRLIQFCFHWGSL 100
>pdb|1CNB|A Chain A, Compensatory Plastic Effects In The Redesign Of Protein-
Zinc Binding Sites
pdb|1CNC|A Chain A, Compensatory Plastic Effects In The Redesign Of Protein-
Zinc Binding Sites
Length = 259
Score = 25.8 bits (55), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 24/50 (48%), Gaps = 5/50 (10%)
Query: 39 SVRRFRGGMQIFVESSDTIDNVKAKIQDKKGTPPDQQRQIFWFVFGWGSL 88
S+R G VE D+ D KA + KG P D ++ F F WGSL
Sbjct: 55 SLRILNNGHAFNVEFDDSQD--KAVL---KGGPLDGTYRLIQFCFHWGSL 99
>pdb|2NWY|A Chain A, Structural And Kinetic Effects Of Hydrophobic Mutations On
The Active Site Of Human Carbonic Anhydrase Ii
pdb|2NWZ|A Chain A, Structural And Kinetic Effects Of Hydrophobic Mutations On
The Active Site Of Human Carbonic Anhydrase Ii
Length = 260
Score = 25.8 bits (55), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 24/50 (48%), Gaps = 5/50 (10%)
Query: 39 SVRRFRGGMQIFVESSDTIDNVKAKIQDKKGTPPDQQRQIFWFVFGWGSL 88
S+R G VE D+ D KA + KG P D ++ F F WGSL
Sbjct: 56 SLRILNNGHAFLVEFDDSQD--KAVL---KGGPLDGTYRLIQFHFHWGSL 100
>pdb|1CVF|A Chain A, Structural Consequences Of Redesigning A Protein-Zinc
Binding Site
Length = 259
Score = 25.4 bits (54), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 24/50 (48%), Gaps = 5/50 (10%)
Query: 39 SVRRFRGGMQIFVESSDTIDNVKAKIQDKKGTPPDQQRQIFWFVFGWGSL 88
S+R G VE D+ D KA + KG P D ++ F F WGSL
Sbjct: 55 SLRILNNGHAFNVEFDDSQD--KAVL---KGGPLDGTYRLIQFAFHWGSL 99
>pdb|1TH9|A Chain A, Effect Of Shuttle Location And Ph Environment On H+
Transfer In Human Carbonic Anhydrase Ii
pdb|1THK|A Chain A, Effect Of Shuttle Location And Ph Environment On H+
Transfer In Human Carbonic Anhydrase Ii
Length = 260
Score = 25.4 bits (54), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 24/50 (48%), Gaps = 5/50 (10%)
Query: 39 SVRRFRGGMQIFVESSDTIDNVKAKIQDKKGTPPDQQRQIFWFVFGWGSL 88
S+R G VE D+ D KA + KG P D ++ F F WGSL
Sbjct: 56 SLRILNNGHAFHVEFDDSQD--KAVL---KGGPLDGTYRLIQFHFHWGSL 100
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.325 0.143 0.447
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,960,302
Number of Sequences: 62578
Number of extensions: 101384
Number of successful extensions: 679
Number of sequences better than 100.0: 109
Number of HSP's better than 100.0 without gapping: 88
Number of HSP's successfully gapped in prelim test: 21
Number of HSP's that attempted gapping in prelim test: 440
Number of HSP's gapped (non-prelim): 194
length of query: 97
length of database: 14,973,337
effective HSP length: 63
effective length of query: 34
effective length of database: 11,030,923
effective search space: 375051382
effective search space used: 375051382
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 45 (21.9 bits)