Query 040204
Match_columns 97
No_of_seqs 136 out of 1260
Neff 7.9
Searched_HMMs 46136
Date Fri Mar 29 06:08:05 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040204.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/040204hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd01793 Fubi Fubi ubiquitin-li 99.5 1.4E-14 3.1E-19 84.9 2.3 46 1-46 28-74 (74)
2 KOG0004 Ubiquitin/40S ribosoma 99.4 4.2E-14 9.1E-19 92.8 1.5 46 1-46 30-76 (156)
3 KOG0005 Ubiquitin-like protein 99.4 2E-13 4.4E-18 76.7 2.7 43 41-83 5-49 (70)
4 cd01793 Fubi Fubi ubiquitin-li 99.4 8.8E-13 1.9E-17 77.3 4.9 46 38-83 2-47 (74)
5 cd01807 GDX_N ubiquitin-like d 99.4 1.7E-13 3.7E-18 80.3 1.6 43 1-43 30-73 (74)
6 cd01802 AN1_N ubiquitin-like d 99.4 1.9E-12 4.2E-17 80.6 6.0 62 22-83 12-76 (103)
7 cd01810 ISG15_repeat2 ISG15 ub 99.4 3.6E-13 7.7E-18 79.0 2.1 46 1-46 28-74 (74)
8 KOG0003 Ubiquitin/60s ribosoma 99.3 3.5E-14 7.7E-19 88.3 -2.6 59 1-62 30-89 (128)
9 cd01802 AN1_N ubiquitin-like d 99.3 4.5E-13 9.8E-18 83.5 2.3 46 1-46 57-103 (103)
10 cd01797 NIRF_N amino-terminal 99.3 4.4E-13 9.5E-18 79.7 1.9 44 1-44 32-76 (78)
11 cd01794 DC_UbP_C dendritic cel 99.3 6.1E-13 1.3E-17 77.5 1.6 41 1-41 28-69 (70)
12 cd01807 GDX_N ubiquitin-like d 99.3 4.3E-12 9.2E-17 74.3 4.9 46 38-83 2-49 (74)
13 PTZ00044 ubiquitin; Provisiona 99.3 9.6E-13 2.1E-17 77.2 2.0 46 1-46 30-76 (76)
14 cd01794 DC_UbP_C dendritic cel 99.3 3.4E-12 7.5E-17 74.3 4.3 43 41-83 3-47 (70)
15 cd01798 parkin_N amino-termina 99.3 1.1E-12 2.5E-17 76.0 1.6 42 1-42 28-70 (70)
16 cd01815 BMSC_UbP_N Ubiquitin-l 99.3 1.5E-12 3.2E-17 76.8 1.2 40 2-41 31-74 (75)
17 cd01806 Nedd8 Nebb8-like ubiq 99.2 4.4E-12 9.5E-17 74.0 2.8 46 1-46 30-76 (76)
18 cd01800 SF3a120_C Ubiquitin-li 99.2 2.9E-12 6.3E-17 75.5 1.9 46 1-46 27-73 (76)
19 PTZ00044 ubiquitin; Provisiona 99.2 1.9E-11 4.1E-16 71.6 5.0 46 38-83 2-49 (76)
20 cd01791 Ubl5 UBL5 ubiquitin-li 99.2 1.8E-11 3.8E-16 71.9 4.7 47 37-83 2-50 (73)
21 cd01803 Ubiquitin Ubiquitin. U 99.2 5.4E-12 1.2E-16 73.6 2.1 46 1-46 30-76 (76)
22 cd01810 ISG15_repeat2 ISG15 ub 99.2 2.3E-11 5E-16 71.2 4.6 44 40-83 2-47 (74)
23 KOG0003 Ubiquitin/60s ribosoma 99.2 4E-12 8.7E-17 79.2 1.0 50 39-88 4-56 (128)
24 cd01798 parkin_N amino-termina 99.2 3.4E-11 7.3E-16 69.7 4.5 44 40-83 2-47 (70)
25 cd01797 NIRF_N amino-terminal 99.2 3.3E-11 7.2E-16 71.5 4.3 46 38-83 2-51 (78)
26 KOG0005 Ubiquitin-like protein 99.2 3.2E-12 6.9E-17 71.9 -0.3 40 1-40 30-70 (70)
27 PF00240 ubiquitin: Ubiquitin 99.2 1.6E-11 3.5E-16 70.6 2.6 43 1-43 25-68 (69)
28 cd01808 hPLIC_N Ubiquitin-like 99.2 1.2E-11 2.6E-16 71.9 1.6 42 1-42 29-71 (71)
29 cd01796 DDI1_N DNA damage indu 99.1 6.9E-11 1.5E-15 68.8 4.3 37 47-83 12-48 (71)
30 cd01804 midnolin_N Ubiquitin-l 99.1 1.5E-11 3.3E-16 72.9 1.5 46 1-47 31-77 (78)
31 cd01791 Ubl5 UBL5 ubiquitin-li 99.1 1.3E-11 2.9E-16 72.4 1.1 41 1-41 31-72 (73)
32 cd01790 Herp_N Homocysteine-re 99.1 1.4E-10 2.9E-15 69.2 4.6 47 37-83 2-54 (79)
33 cd01803 Ubiquitin Ubiquitin. U 99.1 2.1E-10 4.6E-15 66.8 4.9 46 38-83 2-49 (76)
34 cd01805 RAD23_N Ubiquitin-like 99.1 2.7E-10 5.9E-15 66.7 5.4 46 38-83 2-51 (77)
35 cd01809 Scythe_N Ubiquitin-lik 99.1 3.8E-11 8.3E-16 69.3 1.6 42 1-42 30-72 (72)
36 cd01805 RAD23_N Ubiquitin-like 99.1 6E-11 1.3E-15 69.5 2.2 43 1-43 30-75 (77)
37 cd01806 Nedd8 Nebb8-like ubiq 99.1 3.3E-10 7.1E-15 66.0 5.3 46 38-83 2-49 (76)
38 cd01796 DDI1_N DNA damage indu 99.1 3.8E-11 8.2E-16 69.9 1.3 40 1-40 29-70 (71)
39 cd01808 hPLIC_N Ubiquitin-like 99.1 3.3E-10 7.1E-15 65.8 4.9 45 39-83 3-48 (71)
40 cd01763 Sumo Small ubiquitin-r 99.1 1.2E-10 2.6E-15 70.4 2.8 45 2-46 42-87 (87)
41 cd01804 midnolin_N Ubiquitin-l 99.0 3.8E-10 8.2E-15 66.8 4.9 47 37-83 2-50 (78)
42 cd01809 Scythe_N Ubiquitin-lik 99.0 6.1E-10 1.3E-14 64.2 5.1 46 38-83 2-49 (72)
43 PF00240 ubiquitin: Ubiquitin 99.0 7.9E-10 1.7E-14 63.4 5.3 42 47-88 8-51 (69)
44 cd01813 UBP_N UBP ubiquitin pr 99.0 5.6E-10 1.2E-14 65.6 4.3 45 39-83 3-51 (74)
45 KOG0004 Ubiquitin/40S ribosoma 99.0 1.4E-10 3.1E-15 76.3 1.6 39 47-85 13-51 (156)
46 cd01792 ISG15_repeat1 ISG15 ub 99.0 5.7E-10 1.2E-14 66.3 3.9 47 37-83 3-53 (80)
47 cd01812 BAG1_N Ubiquitin-like 99.0 8.5E-10 1.8E-14 63.5 4.4 46 38-83 2-48 (71)
48 cd01814 NTGP5 Ubiquitin-like N 99.0 2.6E-10 5.6E-15 71.7 2.2 43 3-45 42-93 (113)
49 cd01800 SF3a120_C Ubiquitin-li 99.0 7.6E-10 1.6E-14 65.1 3.9 37 47-83 10-46 (76)
50 cd01814 NTGP5 Ubiquitin-like N 99.0 7.4E-10 1.6E-14 69.7 3.8 53 36-88 4-68 (113)
51 cd01792 ISG15_repeat1 ISG15 ub 99.0 1.6E-10 3.5E-15 68.6 0.7 43 1-43 32-77 (80)
52 cd01799 Hoil1_N Ubiquitin-like 98.9 9E-10 2E-14 64.9 3.3 36 47-83 15-50 (75)
53 smart00213 UBQ Ubiquitin homol 98.9 3E-09 6.5E-14 59.6 5.1 46 38-83 2-48 (64)
54 cd01812 BAG1_N Ubiquitin-like 98.9 3.1E-10 6.8E-15 65.4 1.1 41 1-41 29-70 (71)
55 cd01815 BMSC_UbP_N Ubiquitin-l 98.9 1.3E-09 2.9E-14 64.2 2.7 37 52-88 18-59 (75)
56 cd01799 Hoil1_N Ubiquitin-like 98.8 2.2E-09 4.7E-14 63.3 1.1 40 1-41 32-74 (75)
57 cd01790 Herp_N Homocysteine-re 98.8 2.6E-09 5.6E-14 63.6 1.1 35 7-41 41-78 (79)
58 cd01813 UBP_N UBP ubiquitin pr 98.8 2.4E-09 5.1E-14 62.9 0.9 40 1-40 29-72 (74)
59 cd01763 Sumo Small ubiquitin-r 98.7 4.9E-08 1.1E-12 58.8 6.0 50 34-83 9-60 (87)
60 cd01795 USP48_C USP ubiquitin- 98.7 6.4E-09 1.4E-13 64.2 1.9 42 1-42 34-77 (107)
61 TIGR00601 rad23 UV excision re 98.7 4.1E-08 8.9E-13 73.2 5.2 46 38-83 2-52 (378)
62 cd01795 USP48_C USP ubiquitin- 98.6 6.5E-08 1.4E-12 59.7 3.9 39 45-83 15-53 (107)
63 smart00213 UBQ Ubiquitin homol 98.6 1.8E-08 3.9E-13 56.3 1.0 35 1-35 29-64 (64)
64 KOG0010 Ubiquitin-like protein 98.5 2.3E-08 4.9E-13 76.0 1.0 46 1-46 44-90 (493)
65 cd01769 UBL Ubiquitin-like dom 98.4 6.8E-08 1.5E-12 54.6 1.3 40 2-41 28-68 (69)
66 TIGR00601 rad23 UV excision re 98.4 8E-08 1.7E-12 71.7 1.8 43 2-44 31-77 (378)
67 KOG0001 Ubiquitin and ubiquiti 98.4 2.4E-07 5.2E-12 52.1 3.1 43 2-44 30-73 (75)
68 cd01769 UBL Ubiquitin-like dom 98.3 1.1E-06 2.4E-11 49.6 4.2 37 47-83 10-46 (69)
69 KOG0010 Ubiquitin-like protein 98.3 8.1E-07 1.7E-11 67.7 3.9 53 36-88 15-70 (493)
70 PF11976 Rad60-SLD: Ubiquitin- 98.3 5.7E-07 1.2E-11 51.9 2.2 40 2-41 31-72 (72)
71 KOG0011 Nucleotide excision re 98.2 1.9E-06 4.1E-11 63.0 4.1 46 38-83 2-51 (340)
72 cd01789 Alp11_N Ubiquitin-like 98.0 3.5E-06 7.6E-11 50.5 1.8 41 2-42 33-81 (84)
73 PF11976 Rad60-SLD: Ubiquitin- 98.0 3.9E-05 8.5E-10 44.1 5.8 46 38-83 2-50 (72)
74 cd01789 Alp11_N Ubiquitin-like 97.8 4.7E-05 1E-09 45.5 4.9 35 48-82 16-51 (84)
75 KOG0011 Nucleotide excision re 97.8 1.1E-05 2.5E-10 58.9 2.1 42 3-44 32-76 (340)
76 PF13881 Rad60-SLD_2: Ubiquiti 97.7 4.8E-05 1E-09 48.0 3.5 37 8-44 47-90 (111)
77 PF14560 Ubiquitin_2: Ubiquiti 97.7 0.00015 3.2E-09 43.4 5.5 34 47-80 16-49 (87)
78 KOG4248 Ubiquitin-like protein 97.7 2.2E-05 4.8E-10 64.3 1.8 46 1-46 32-77 (1143)
79 PF11543 UN_NPL4: Nuclear pore 97.5 0.00014 3E-09 43.3 3.8 44 35-78 3-47 (80)
80 cd01788 ElonginB Ubiquitin-lik 97.5 0.00015 3.3E-09 45.8 4.0 50 38-88 4-57 (119)
81 KOG0001 Ubiquitin and ubiquiti 97.5 0.00031 6.8E-09 39.0 4.7 37 47-83 12-48 (75)
82 PLN02560 enoyl-CoA reductase 97.3 0.00038 8.1E-09 50.9 4.5 33 48-80 17-50 (308)
83 KOG0006 E3 ubiquitin-protein l 97.3 0.00033 7.1E-09 51.6 3.7 40 44-83 13-52 (446)
84 PF13881 Rad60-SLD_2: Ubiquiti 97.3 0.0012 2.5E-08 41.7 5.6 54 36-89 2-67 (111)
85 cd01811 OASL_repeat1 2'-5' oli 97.2 0.0002 4.3E-09 42.1 1.8 41 3-44 32-78 (80)
86 PF14560 Ubiquitin_2: Ubiquiti 97.2 9.7E-05 2.1E-09 44.2 0.2 40 2-41 34-82 (87)
87 cd01801 Tsc13_N Ubiquitin-like 97.1 0.00032 7E-09 41.1 2.0 34 6-39 38-74 (77)
88 cd00196 UBQ Ubiquitin-like pro 97.1 0.0011 2.5E-08 34.8 4.0 42 47-88 10-51 (69)
89 cd01788 ElonginB Ubiquitin-lik 97.1 0.00034 7.3E-09 44.3 2.0 59 6-64 36-104 (119)
90 PF10302 DUF2407: DUF2407 ubiq 97.0 0.0019 4E-08 39.8 4.4 45 39-83 3-54 (97)
91 KOG4248 Ubiquitin-like protein 96.9 0.0014 2.9E-08 54.3 4.2 37 47-83 15-51 (1143)
92 cd01811 OASL_repeat1 2'-5' oli 96.9 0.0034 7.4E-08 36.9 4.6 44 37-81 1-46 (80)
93 cd00196 UBQ Ubiquitin-like pro 96.6 0.0013 2.9E-08 34.5 1.6 40 2-41 28-68 (69)
94 PLN02560 enoyl-CoA reductase 96.4 0.0017 3.6E-08 47.5 1.6 42 2-45 34-84 (308)
95 KOG0006 E3 ubiquitin-protein l 96.2 0.0018 3.8E-08 47.8 0.9 42 2-43 34-77 (446)
96 KOG1769 Ubiquitin-like protein 95.8 0.011 2.3E-07 36.6 2.9 45 3-47 52-97 (99)
97 KOG1872 Ubiquitin-specific pro 95.8 0.015 3.3E-07 44.6 4.3 45 39-83 6-52 (473)
98 cd01801 Tsc13_N Ubiquitin-like 95.0 0.029 6.2E-07 32.7 2.7 32 52-83 20-54 (77)
99 KOG4495 RNA polymerase II tran 94.9 0.044 9.6E-07 33.8 3.5 36 47-82 14-49 (110)
100 KOG1872 Ubiquitin-specific pro 93.8 0.091 2E-06 40.5 3.8 44 3-46 35-79 (473)
101 PF11543 UN_NPL4: Nuclear pore 92.0 0.022 4.9E-07 33.7 -1.3 39 2-40 34-78 (80)
102 KOG3493 Ubiquitin-like protein 91.3 0.074 1.6E-06 30.6 0.4 31 47-77 14-44 (73)
103 PF08817 YukD: WXG100 protein 91.3 0.13 2.7E-06 30.1 1.4 28 12-39 49-78 (79)
104 KOG4250 TANK binding protein k 89.8 0.44 9.5E-06 38.7 3.6 50 34-83 313-363 (732)
105 cd06406 PB1_P67 A PB1 domain i 89.7 1.5 3.2E-05 26.1 5.0 38 46-83 12-49 (80)
106 smart00455 RBD Raf-like Ras-bi 89.6 0.8 1.7E-05 26.3 3.8 37 47-83 12-48 (70)
107 KOG0013 Uncharacterized conser 89.4 0.25 5.5E-06 34.6 1.8 40 2-41 177-217 (231)
108 PF11470 TUG-UBL1: GLUT4 regul 89.3 1 2.2E-05 25.7 4.0 37 47-83 9-45 (65)
109 PF11470 TUG-UBL1: GLUT4 regul 86.8 0.52 1.1E-05 26.9 1.7 37 3-39 28-65 (65)
110 PF00564 PB1: PB1 domain; Int 86.2 4 8.6E-05 23.4 5.4 48 36-83 1-50 (84)
111 cd01760 RBD Ubiquitin-like dom 85.4 2.1 4.5E-05 24.9 3.8 41 43-83 6-48 (72)
112 KOG0013 Uncharacterized conser 84.9 0.75 1.6E-05 32.3 2.1 62 22-83 128-195 (231)
113 KOG4583 Membrane-associated ER 84.5 0.41 8.9E-06 35.8 0.7 51 36-86 9-65 (391)
114 smart00166 UBX Domain present 84.1 4.2 9.1E-05 23.5 4.9 44 35-78 3-48 (80)
115 COG5227 SMT3 Ubiquitin-like pr 84.0 0.39 8.5E-06 29.4 0.4 43 4-46 57-100 (103)
116 PF11620 GABP-alpha: GA-bindin 83.8 3.4 7.4E-05 24.9 4.3 55 3-57 24-86 (88)
117 PF13019 Telomere_Sde2: Telome 82.9 3.1 6.8E-05 27.9 4.4 34 47-80 17-51 (162)
118 COG0299 PurN Folate-dependent 81.9 1.5 3.3E-05 30.4 2.6 42 28-69 125-174 (200)
119 PF10302 DUF2407: DUF2407 ubiq 80.1 0.97 2.1E-05 27.7 1.1 23 8-30 42-64 (97)
120 KOG3206 Alpha-tubulin folding 78.9 2.8 6.2E-05 29.4 3.2 31 49-79 17-47 (234)
121 smart00666 PB1 PB1 domain. Pho 78.6 9.9 0.00022 21.6 5.2 36 48-83 14-49 (81)
122 PF00789 UBX: UBX domain; Int 78.5 10 0.00022 21.7 5.2 45 34-78 4-51 (82)
123 PF11069 DUF2870: Protein of u 77.7 3.4 7.4E-05 25.5 3.0 33 13-45 3-37 (98)
124 cd01774 Faf1_like2_UBX Faf1 ik 75.9 11 0.00024 22.3 4.8 46 35-81 3-50 (85)
125 COG5417 Uncharacterized small 75.8 2.7 5.8E-05 24.8 2.0 30 10-39 50-80 (81)
126 KOG1769 Ubiquitin-like protein 71.9 19 0.0004 22.3 5.2 36 48-83 34-69 (99)
127 KOG3076 5'-phosphoribosylglyci 71.6 3.7 8E-05 28.5 2.2 40 30-69 135-182 (206)
128 PF14533 USP7_C2: Ubiquitin-sp 70.6 4.3 9.4E-05 28.0 2.5 25 47-71 135-159 (213)
129 KOG3439 Protein conjugation fa 68.5 15 0.00033 23.2 4.3 48 36-83 30-83 (116)
130 cd05992 PB1 The PB1 domain is 68.2 19 0.00042 20.3 5.1 42 42-83 6-49 (81)
131 PF02196 RBD: Raf-like Ras-bin 66.8 22 0.00047 20.3 5.7 41 42-82 6-48 (71)
132 PF15044 CLU_N: Mitochondrial 65.0 5.9 0.00013 23.0 1.9 30 12-41 26-57 (76)
133 KOG1639 Steroid reductase requ 63.2 2.5 5.5E-05 30.5 0.1 39 6-46 38-81 (297)
134 KOG4583 Membrane-associated ER 62.4 0.38 8.2E-06 35.9 -4.2 36 9-44 51-89 (391)
135 cd01767 UBX UBX (ubiquitin reg 61.8 28 0.0006 19.8 4.7 42 36-78 2-45 (77)
136 cd06409 PB1_MUG70 The MUG70 pr 61.6 25 0.00054 21.1 4.2 36 48-83 14-52 (86)
137 PF12436 USP7_ICP0_bdg: ICP0-b 61.5 20 0.00044 25.3 4.5 76 3-78 106-223 (249)
138 smart00295 B41 Band 4.1 homolo 60.9 35 0.00075 22.4 5.4 36 37-72 4-41 (207)
139 PF10790 DUF2604: Protein of U 60.7 7.4 0.00016 22.4 1.7 36 7-42 34-71 (76)
140 cd06407 PB1_NLP A PB1 domain i 59.7 33 0.00072 20.2 4.5 37 47-83 12-49 (82)
141 cd01771 Faf1_UBX Faf1 UBX doma 59.3 34 0.00073 20.0 4.8 43 35-78 3-47 (80)
142 PF09379 FERM_N: FERM N-termin 59.1 22 0.00048 20.0 3.7 37 43-79 3-42 (80)
143 cd01773 Faf1_like1_UBX Faf1 ik 59.0 36 0.00078 20.2 4.8 44 35-79 4-49 (82)
144 cd01817 RGS12_RBD Ubiquitin do 58.0 30 0.00065 20.2 4.0 41 43-83 6-48 (73)
145 PF00788 RA: Ras association ( 56.7 34 0.00073 19.5 4.3 32 47-78 19-52 (93)
146 PRK13011 formyltetrahydrofolat 56.3 12 0.00026 27.2 2.6 36 34-69 219-260 (286)
147 cd01772 SAKS1_UBX SAKS1-like U 55.5 38 0.00083 19.5 4.8 35 35-69 3-39 (79)
148 PF05370 DUF749: Domain of unk 52.3 16 0.00034 22.1 2.3 43 17-67 29-71 (87)
149 PRK13010 purU formyltetrahydro 52.2 15 0.00032 26.8 2.5 36 34-69 223-264 (289)
150 PRK06437 hypothetical protein; 52.2 36 0.00078 19.1 3.7 37 4-45 29-66 (67)
151 KOG3391 Transcriptional co-rep 52.1 8.2 0.00018 25.4 1.1 29 17-45 110-139 (151)
152 TIGR00655 PurU formyltetrahydr 51.6 14 0.00029 26.8 2.3 36 34-69 214-255 (280)
153 KOG2561 Adaptor protein NUB1, 51.5 5.1 0.00011 31.4 0.1 42 1-42 69-111 (568)
154 KOG0007 Splicing factor 3a, su 50.7 5.2 0.00011 29.7 0.0 31 53-83 302-332 (341)
155 COG4009 Uncharacterized protei 50.4 31 0.00067 20.6 3.3 41 17-66 30-71 (88)
156 cd01818 TIAM1_RBD Ubiquitin do 49.1 34 0.00074 20.2 3.3 34 47-80 12-45 (77)
157 cd06411 PB1_p51 The PB1 domain 48.9 55 0.0012 19.3 4.3 36 49-84 11-46 (78)
158 cd01768 RA RA (Ras-associating 48.2 52 0.0011 18.8 4.3 32 47-78 15-48 (87)
159 PF08337 Plexin_cytopl: Plexin 46.2 43 0.00094 26.7 4.4 58 21-79 175-244 (539)
160 smart00314 RA Ras association 43.7 64 0.0014 18.6 4.5 32 47-78 18-51 (90)
161 PF12754 Blt1: Cell-cycle cont 43.4 7.8 0.00017 28.6 0.0 30 54-83 103-147 (309)
162 cd01776 Rin1_RA Ubiquitin doma 42.4 46 0.001 20.0 3.2 33 47-79 16-49 (87)
163 cd01770 p47_UBX p47-like ubiqu 42.0 69 0.0015 18.5 5.0 43 36-78 4-49 (79)
164 PF14453 ThiS-like: ThiS-like 40.7 47 0.001 18.4 2.9 33 45-83 6-38 (57)
165 PF07494 Reg_prop: Two compone 39.6 19 0.00041 15.9 1.0 19 70-90 2-20 (24)
166 PLN02828 formyltetrahydrofolat 39.2 27 0.00059 25.2 2.2 39 31-69 196-242 (268)
167 cd01777 SNX27_RA Ubiquitin dom 38.3 66 0.0014 19.4 3.5 38 38-75 3-42 (87)
168 PF14836 Ubiquitin_3: Ubiquiti 37.1 74 0.0016 19.2 3.6 29 49-78 18-46 (88)
169 PTZ00380 microtubule-associate 37.0 48 0.001 21.2 2.9 45 35-80 26-75 (121)
170 cd01816 Raf_RBD Ubiquitin doma 37.0 81 0.0018 18.5 3.6 34 47-81 12-45 (74)
171 PF12518 DUF3721: Protein of u 36.9 13 0.00028 18.5 0.2 7 86-92 23-29 (34)
172 PRK06027 purU formyltetrahydro 36.8 36 0.00077 24.7 2.6 36 34-69 219-260 (286)
173 PF13180 PDZ_2: PDZ domain; PD 36.6 27 0.00059 19.8 1.6 43 3-45 28-73 (82)
174 PF08825 E2_bind: E2 binding d 35.6 71 0.0015 18.9 3.3 38 49-90 1-38 (84)
175 PF12754 Blt1: Cell-cycle cont 35.3 13 0.00027 27.6 0.0 43 4-46 126-181 (309)
176 PRK02289 4-oxalocrotonate taut 35.2 72 0.0016 17.1 3.1 25 59-83 23-47 (60)
177 PF02192 PI3K_p85B: PI3-kinase 34.8 57 0.0012 19.1 2.8 24 48-71 3-27 (78)
178 cd06410 PB1_UP2 Uncharacterize 34.7 1.1E+02 0.0024 18.6 4.5 38 42-80 18-57 (97)
179 PF10209 DUF2340: Uncharacteri 32.3 25 0.00055 22.5 1.0 23 19-41 81-107 (122)
180 PF13439 Glyco_transf_4: Glyco 32.2 45 0.00097 20.5 2.2 25 58-83 148-172 (177)
181 TIGR02958 sec_mycoba_snm4 secr 31.8 25 0.00054 27.2 1.1 30 17-46 54-84 (452)
182 cd06398 PB1_Joka2 The PB1 doma 29.3 95 0.0021 18.6 3.2 31 53-83 23-54 (91)
183 smart00143 PI3K_p85B PI3-kinas 28.4 67 0.0014 18.9 2.3 35 48-82 3-43 (78)
184 PF06543 Lac_bphage_repr: Lact 27.9 25 0.00054 18.9 0.4 13 12-24 22-34 (49)
185 PF08783 DWNN: DWNN domain; I 27.7 43 0.00092 19.5 1.4 18 53-70 19-36 (74)
186 PF06200 tify: tify domain; I 27.7 68 0.0015 16.0 2.0 13 71-83 4-16 (36)
187 PF08299 Bac_DnaA_C: Bacterial 27.3 28 0.0006 19.7 0.6 19 56-74 1-19 (70)
188 PF11197 DUF2835: Protein of u 24.9 7.5 0.00016 22.3 -2.1 27 69-95 6-40 (68)
189 PF14732 UAE_UbL: Ubiquitin/SU 24.7 37 0.0008 20.1 0.8 16 24-39 50-66 (87)
190 KOG2982 Uncharacterized conser 23.7 96 0.0021 23.6 2.9 33 48-80 351-383 (418)
191 PF12436 USP7_ICP0_bdg: ICP0-b 23.4 1.4E+02 0.0029 21.1 3.6 36 48-83 88-123 (249)
192 PF14044 NETI: NETI protein 22.4 1.5E+02 0.0034 16.4 3.0 17 50-66 3-19 (57)
193 cd01787 GRB7_RA RA (RAS-associ 22.3 1.9E+02 0.0041 17.3 4.6 32 44-75 12-43 (85)
194 cd01611 GABARAP Ubiquitin doma 21.3 2.1E+02 0.0045 17.8 3.8 33 49-81 45-77 (112)
195 cd01775 CYR1_RA Ubiquitin doma 21.2 2.1E+02 0.0047 17.6 4.5 35 47-81 15-51 (97)
196 PF09673 TrbC_Ftype: Type-F co 20.8 1.5E+02 0.0033 18.2 3.1 33 49-84 2-34 (113)
197 PF14854 LURAP: Leucine rich a 20.8 77 0.0017 20.3 1.7 20 52-71 47-66 (121)
198 PF10407 Cytokin_check_N: Cdc1 20.8 1.2E+02 0.0025 17.6 2.3 34 49-83 7-42 (73)
199 PF15625 CC2D2AN-C2: CC2D2A N- 20.6 2.5E+02 0.0053 18.5 4.2 41 11-51 40-85 (168)
200 PRK06959 putative threonine-ph 20.5 1.1E+02 0.0023 22.2 2.7 31 52-83 51-81 (339)
No 1
>cd01793 Fubi Fubi ubiquitin-like protein. Fubi is a ubiquitin-like protein encoded by the fau gene which has an N-terminal ubiquitin-like domain (also referred to as FUBI) fused to the ribosomal protein S30. Fubi is thought to be a tumor suppressor protein and the FUBI domain may act as a substitute or an inhibitor of ubiquitin or one of ubiquitin's close relatives UCRP, FAT10, and Nedd8.
Probab=99.48 E-value=1.4e-14 Score=84.94 Aligned_cols=46 Identities=33% Similarity=0.415 Sum_probs=43.3
Q ss_pred CccccCCCCcceEEEECCEEeCCCCCCccceec-ccceeeeeeeecc
Q 040204 1 IEDKEEILRDQQRFIFAGKRLEDGRTLVDYNIH-GSTLHSVRRFRGG 46 (97)
Q Consensus 1 i~~~~gip~~~Q~L~~~g~~L~d~~tL~~y~I~-~sti~l~i~~~~g 46 (97)
|++++|+|+++|+|+|+|++|+|+++|++|+|+ ++++|+++++.||
T Consensus 28 i~~~~gip~~~q~Li~~Gk~L~D~~tL~~~~i~~~~tl~l~~~l~GG 74 (74)
T cd01793 28 VAGLEGIDVEDQVLLLAGVPLEDDATLGQCGVEELCTLEVAGRLLGG 74 (74)
T ss_pred HHhhhCCCHHHEEEEECCeECCCCCCHHHcCCCCCCEEEEEEecCCC
Confidence 467899999999999999999999999999999 9999999998875
No 2
>KOG0004 consensus Ubiquitin/40S ribosomal protein S27a fusion [Translation, ribosomal structure and biogenesis]
Probab=99.42 E-value=4.2e-14 Score=92.85 Aligned_cols=46 Identities=74% Similarity=1.063 Sum_probs=44.3
Q ss_pred CccccCCCCcceEEEECCEEeCCCCCCccceec-ccceeeeeeeecc
Q 040204 1 IEDKEEILRDQQRFIFAGKRLEDGRTLVDYNIH-GSTLHSVRRFRGG 46 (97)
Q Consensus 1 i~~~~gip~~~Q~L~~~g~~L~d~~tL~~y~I~-~sti~l~i~~~~g 46 (97)
|++++|||+++|||+|+|++|+|+++|+||+|+ .+|++++++..||
T Consensus 30 iq~~egIp~dqqrlifag~qLedgrtlSDY~Iqkestl~l~l~l~Gg 76 (156)
T KOG0004|consen 30 IQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76 (156)
T ss_pred hhcccCCCchhhhhhhhhcccccCCccccccccccceEEEEEEecCC
Confidence 678999999999999999999999999999999 9999999998887
No 3
>KOG0005 consensus Ubiquitin-like protein [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.39 E-value=2e-13 Score=76.71 Aligned_cols=43 Identities=30% Similarity=0.563 Sum_probs=37.9
Q ss_pred eeeecc--eeeeeeccchhHHHHHhhhhhcCCCCCceEEEECeEe
Q 040204 41 RRFRGG--MQIFVESSDTIDNVKAKIQDKKGTPPDQQRQIFWFVF 83 (97)
Q Consensus 41 i~~~~g--~~i~v~~~~TV~~lK~~I~~~~gip~~~q~Lif~G~~ 83 (97)
++...| +.|.++|+|+|+.+|++|++++||||.+|||||+|+|
T Consensus 5 vktLt~KeIeidIep~DkverIKErvEEkeGIPp~qqrli~~gkq 49 (70)
T KOG0005|consen 5 VKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYAGKQ 49 (70)
T ss_pred EeeeccceEEEeeCcchHHHHHHHHhhhhcCCCchhhhhhhcccc
Confidence 344444 5677799999999999999999999999999999999
No 4
>cd01793 Fubi Fubi ubiquitin-like protein. Fubi is a ubiquitin-like protein encoded by the fau gene which has an N-terminal ubiquitin-like domain (also referred to as FUBI) fused to the ribosomal protein S30. Fubi is thought to be a tumor suppressor protein and the FUBI domain may act as a substitute or an inhibitor of ubiquitin or one of ubiquitin's close relatives UCRP, FAT10, and Nedd8.
Probab=99.38 E-value=8.8e-13 Score=77.29 Aligned_cols=46 Identities=17% Similarity=0.191 Sum_probs=40.4
Q ss_pred eeeeeeecceeeeeeccchhHHHHHhhhhhcCCCCCceEEEECeEe
Q 040204 38 HSVRRFRGGMQIFVESSDTIDNVKAKIQDKKGTPPDQQRQIFWFVF 83 (97)
Q Consensus 38 ~l~i~~~~g~~i~v~~~~TV~~lK~~I~~~~gip~~~q~Lif~G~~ 83 (97)
.+.++......+.|++++||+++|++|++++|+|+++|+|+|+|++
T Consensus 2 qi~vk~~~~~~l~v~~~~tV~~lK~~i~~~~gip~~~q~Li~~Gk~ 47 (74)
T cd01793 2 QLFVRAQNTHTLEVTGQETVSDIKAHVAGLEGIDVEDQVLLLAGVP 47 (74)
T ss_pred EEEEECCCEEEEEECCcCcHHHHHHHHHhhhCCCHHHEEEEECCeE
Confidence 3455554557788999999999999999999999999999999998
No 5
>cd01807 GDX_N ubiquitin-like domain of GDX. GDX contains an N-terminal ubiquitin-like domain as well as an uncharacterized c-terminal domain. The function of GDX is unknown.
Probab=99.37 E-value=1.7e-13 Score=80.28 Aligned_cols=43 Identities=35% Similarity=0.594 Sum_probs=40.2
Q ss_pred CccccCCCCcceEEEECCEEeCCCCCCccceec-ccceeeeeee
Q 040204 1 IEDKEEILRDQQRFIFAGKRLEDGRTLVDYNIH-GSTLHSVRRF 43 (97)
Q Consensus 1 i~~~~gip~~~Q~L~~~g~~L~d~~tL~~y~I~-~sti~l~i~~ 43 (97)
|++++|+|+++|+|+|+|++|+|+++|++|||+ +++++++.++
T Consensus 30 i~~~~gi~~~~q~L~~~G~~L~d~~~L~~~~i~~~~~l~l~~~~ 73 (74)
T cd01807 30 VSEHLNVPEEQQRLLFKGKALADDKRLSDYSIGPNAKLNLVVRP 73 (74)
T ss_pred HHHHHCCCHHHeEEEECCEECCCCCCHHHCCCCCCCEEEEEEcC
Confidence 467889999999999999999999999999999 9999999875
No 6
>cd01802 AN1_N ubiquitin-like domain of AN1. AN1 (also known as ANUBL1 and RSD-7) is ubiquitin-like protein with a testis-specific expression in rats that has an N-terminal ubiquitin-like domain and a C-terminal zinc-binding domain. Unlike ubiquitin polyproteins and most ubiquitin fusion proteins, the N-terminal ubiquitin-like domain of An1 does not undergo proteolytic processing. The function of AN1 is unknown.
Probab=99.36 E-value=1.9e-12 Score=80.62 Aligned_cols=62 Identities=29% Similarity=0.299 Sum_probs=52.3
Q ss_pred CCCCCCccceec-ccceeeeeeeecc--eeeeeeccchhHHHHHhhhhhcCCCCCceEEEECeEe
Q 040204 22 EDGRTLVDYNIH-GSTLHSVRRFRGG--MQIFVESSDTIDNVKAKIQDKKGTPPDQQRQIFWFVF 83 (97)
Q Consensus 22 ~d~~tL~~y~I~-~sti~l~i~~~~g--~~i~v~~~~TV~~lK~~I~~~~gip~~~q~Lif~G~~ 83 (97)
+|+..-.+|-.. .+++.+.++..+| ..+.|++++||.+||++|++++|+|+++|+|+|+|+.
T Consensus 12 ~~~~~~~~~~~~~~~~M~I~Vk~l~G~~~~leV~~~~TV~~lK~kI~~~~gip~~~QrLi~~Gk~ 76 (103)
T cd01802 12 EDNMGPFHYKLPFYDTMELFIETLTGTCFELRVSPFETVISVKAKIQRLEGIPVAQQHLIWNNME 76 (103)
T ss_pred cCCcceeEEeeccCCCEEEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHHhCCChHHEEEEECCEE
Confidence 345555566666 7788888888777 5577899999999999999999999999999999998
No 7
>cd01810 ISG15_repeat2 ISG15 ubiquitin-like protein, second repeat of 2. ISG15 is a ubiquitin-like protein containing two ubiquitin homology domains and becomes conjugated to a variety of proteins when cells are treated with type I interferon or lipopolysaccharide. Although ISG15 has properties similar to those of other ubiquitin-like molecules, it is a unique member of the ubiquitin-like superfamily, whose expression and conjugation to target proteins are tightly regulated by specific signaling pathways, indicating it may have specialized functions in the immune system.
Probab=99.35 E-value=3.6e-13 Score=78.97 Aligned_cols=46 Identities=33% Similarity=0.626 Sum_probs=42.6
Q ss_pred CccccCCCCcceEEEECCEEeCCCCCCccceec-ccceeeeeeeecc
Q 040204 1 IEDKEEILRDQQRFIFAGKRLEDGRTLVDYNIH-GSTLHSVRRFRGG 46 (97)
Q Consensus 1 i~~~~gip~~~Q~L~~~g~~L~d~~tL~~y~I~-~sti~l~i~~~~g 46 (97)
|++.+|+|+++|+|+|+|++|+|+++|++|||+ ++++++..+..+|
T Consensus 28 I~~~~gi~~~~q~L~~~G~~L~D~~tL~~~~i~~~~tl~l~~~l~gg 74 (74)
T cd01810 28 VSQRERVQADQFWLSFEGRPMEDEHPLGEYGLKPGCTVFMNLRLRGG 74 (74)
T ss_pred HHHHhCCCHHHeEEEECCEECCCCCCHHHcCCCCCCEEEEEEEccCC
Confidence 456789999999999999999999999999999 9999999988765
No 8
>KOG0003 consensus Ubiquitin/60s ribosomal protein L40 fusion [Translation, ribosomal structure and biogenesis]
Probab=99.34 E-value=3.5e-14 Score=88.31 Aligned_cols=59 Identities=63% Similarity=0.869 Sum_probs=51.5
Q ss_pred CccccCCCCcceEEEECCEEeCCCCCCccceec-ccceeeeeeeecceeeeeeccchhHHHHH
Q 040204 1 IEDKEEILRDQQRFIFAGKRLEDGRTLVDYNIH-GSTLHSVRRFRGGMQIFVESSDTIDNVKA 62 (97)
Q Consensus 1 i~~~~gip~~~Q~L~~~g~~L~d~~tL~~y~I~-~sti~l~i~~~~g~~i~v~~~~TV~~lK~ 62 (97)
|+.++|||+++|+|+|+|++|+|+.|+++|||+ .+|+|++.+..||+ ++|++.--..|+
T Consensus 30 i~~~~Gi~~~~~~L~~~~k~LED~~Tla~Y~i~~~~Tl~~~~rL~GG~---i~~~~aalAmK~ 89 (128)
T KOG0003|consen 30 IQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGI---IEPSLAALAMKY 89 (128)
T ss_pred hccccCCCHHHHHHHhcccccccCCcccccCccchhhhhhhHHHhcCC---CChhHHHHHHHh
Confidence 578899999999999999999999999999999 99999999999993 466655555554
No 9
>cd01802 AN1_N ubiquitin-like domain of AN1. AN1 (also known as ANUBL1 and RSD-7) is ubiquitin-like protein with a testis-specific expression in rats that has an N-terminal ubiquitin-like domain and a C-terminal zinc-binding domain. Unlike ubiquitin polyproteins and most ubiquitin fusion proteins, the N-terminal ubiquitin-like domain of An1 does not undergo proteolytic processing. The function of AN1 is unknown.
Probab=99.34 E-value=4.5e-13 Score=83.48 Aligned_cols=46 Identities=46% Similarity=0.603 Sum_probs=42.9
Q ss_pred CccccCCCCcceEEEECCEEeCCCCCCccceec-ccceeeeeeeecc
Q 040204 1 IEDKEEILRDQQRFIFAGKRLEDGRTLVDYNIH-GSTLHSVRRFRGG 46 (97)
Q Consensus 1 i~~~~gip~~~Q~L~~~g~~L~d~~tL~~y~I~-~sti~l~i~~~~g 46 (97)
|++++|+|+++|+|+|+|+.|+|+.+|++|+|. ++++++.++..+|
T Consensus 57 I~~~~gip~~~QrLi~~Gk~L~D~~tL~dy~I~~~stL~l~~~l~GG 103 (103)
T cd01802 57 IQRLEGIPVAQQHLIWNNMELEDEYCLNDYNISEGCTLKLVLAMRGG 103 (103)
T ss_pred HHHHhCCChHHEEEEECCEECCCCCcHHHcCCCCCCEEEEEEecCCC
Confidence 467899999999999999999999999999999 9999999998775
No 10
>cd01797 NIRF_N amino-terminal ubiquitin-like domain of Np95 and NIRF. NIRF_N This CD represents the amino-terminal ubiquitin-like domain of a family of nuclear proteins that includes Np95 and NIRF (Np95/ICBP90-like RING finger) protein. Both Np95 and NIRF have a domain architecture consisting of a ubiquitin-like domain, a PHD finger, a YDG/SRA domain, Rb-binding motifs and a RING finger domain. Both Np95 and NIRF are ubiquitin ligases that ubiquitinate PCNP (PEST-containing nuclear proteins). While Np95 is capable of binding histones, NIRF is involved in cell cycle regulation.
Probab=99.33 E-value=4.4e-13 Score=79.65 Aligned_cols=44 Identities=32% Similarity=0.576 Sum_probs=40.9
Q ss_pred CccccCCCCcceEEEECCEEeCCCCCCccceec-ccceeeeeeee
Q 040204 1 IEDKEEILRDQQRFIFAGKRLEDGRTLVDYNIH-GSTLHSVRRFR 44 (97)
Q Consensus 1 i~~~~gip~~~Q~L~~~g~~L~d~~tL~~y~I~-~sti~l~i~~~ 44 (97)
|++++|+|+++|+|+|+|+.|+|+.+|++|||+ +++|+++++..
T Consensus 32 i~~~~gi~~~~QrLi~~Gk~L~D~~tL~~y~i~~~~~i~l~~~~~ 76 (78)
T cd01797 32 IQELFNVEPECQRLFYRGKQMEDGHTLFDYNVGLNDIIQLLVRQD 76 (78)
T ss_pred HHHHhCCCHHHeEEEeCCEECCCCCCHHHcCCCCCCEEEEEEecC
Confidence 467789999999999999999999999999999 99999998864
No 11
>cd01794 DC_UbP_C dendritic cell derived ubiquitin-like protein. DC_UbP (dendritic cell derived ubiquitin-like protein) is a ubiquitin-like protein from human dendritic cells that is expressed in the mitochondrion. The ubiquitin-like domain of this protein is found at the C-terminus and lacks the canonical gly-gly motif of ubiquitin required for ubiquitinization. DC_UbP is expressed in tumor cells but not in normal human adult tissue suggesting a role for DC_UbP in tumorogenesis.
Probab=99.31 E-value=6.1e-13 Score=77.52 Aligned_cols=41 Identities=24% Similarity=0.364 Sum_probs=38.6
Q ss_pred CccccCCCCcceEEEECCEEeCCCCCCccceec-ccceeeee
Q 040204 1 IEDKEEILRDQQRFIFAGKRLEDGRTLVDYNIH-GSTLHSVR 41 (97)
Q Consensus 1 i~~~~gip~~~Q~L~~~g~~L~d~~tL~~y~I~-~sti~l~i 41 (97)
|++.+|+|+++|+|+|+|++|+|+.+|++|+|+ +++||+++
T Consensus 28 I~~~~gi~~~~q~Li~~G~~L~D~~~l~~~~i~~~~tv~~~~ 69 (70)
T cd01794 28 LQAAEGVDPCCQRWFFSGKLLTDKTRLQETKIQKDYVVQVIV 69 (70)
T ss_pred HHHHhCCCHHHeEEEECCeECCCCCCHHHcCCCCCCEEEEEe
Confidence 467789999999999999999999999999999 99999986
No 12
>cd01807 GDX_N ubiquitin-like domain of GDX. GDX contains an N-terminal ubiquitin-like domain as well as an uncharacterized c-terminal domain. The function of GDX is unknown.
Probab=99.30 E-value=4.3e-12 Score=74.31 Aligned_cols=46 Identities=17% Similarity=0.280 Sum_probs=40.5
Q ss_pred eeeeeeecc--eeeeeeccchhHHHHHhhhhhcCCCCCceEEEECeEe
Q 040204 38 HSVRRFRGG--MQIFVESSDTIDNVKAKIQDKKGTPPDQQRQIFWFVF 83 (97)
Q Consensus 38 ~l~i~~~~g--~~i~v~~~~TV~~lK~~I~~~~gip~~~q~Lif~G~~ 83 (97)
.+.++..+| ..+.|++++||+++|++|++++|+|+++|+|+|+|++
T Consensus 2 ~i~vk~~~G~~~~l~v~~~~tV~~lK~~i~~~~gi~~~~q~L~~~G~~ 49 (74)
T cd01807 2 FLTVKLLQGRECSLQVSEKESVSTLKKLVSEHLNVPEEQQRLLFKGKA 49 (74)
T ss_pred EEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCCCHHHeEEEECCEE
Confidence 456666666 4577899999999999999999999999999999999
No 13
>PTZ00044 ubiquitin; Provisional
Probab=99.30 E-value=9.6e-13 Score=77.16 Aligned_cols=46 Identities=43% Similarity=0.762 Sum_probs=42.7
Q ss_pred CccccCCCCcceEEEECCEEeCCCCCCccceec-ccceeeeeeeecc
Q 040204 1 IEDKEEILRDQQRFIFAGKRLEDGRTLVDYNIH-GSTLHSVRRFRGG 46 (97)
Q Consensus 1 i~~~~gip~~~Q~L~~~g~~L~d~~tL~~y~I~-~sti~l~i~~~~g 46 (97)
|++.+|+|+++|+|+|+|+.|+|+.+|++|+++ ++++++.++..+|
T Consensus 30 i~~~~gi~~~~q~L~~~g~~L~d~~~l~~~~i~~~~~i~l~~~~~gg 76 (76)
T PTZ00044 30 LQEKEGIDVKQIRLIYSGKQMSDDLKLSDYKVVPGSTIHMVLQLRGG 76 (76)
T ss_pred HHHHHCCCHHHeEEEECCEEccCCCcHHHcCCCCCCEEEEEEEccCC
Confidence 467789999999999999999999999999999 9999999998765
No 14
>cd01794 DC_UbP_C dendritic cell derived ubiquitin-like protein. DC_UbP (dendritic cell derived ubiquitin-like protein) is a ubiquitin-like protein from human dendritic cells that is expressed in the mitochondrion. The ubiquitin-like domain of this protein is found at the C-terminus and lacks the canonical gly-gly motif of ubiquitin required for ubiquitinization. DC_UbP is expressed in tumor cells but not in normal human adult tissue suggesting a role for DC_UbP in tumorogenesis.
Probab=99.30 E-value=3.4e-12 Score=74.34 Aligned_cols=43 Identities=30% Similarity=0.424 Sum_probs=38.5
Q ss_pred eeeecc--eeeeeeccchhHHHHHhhhhhcCCCCCceEEEECeEe
Q 040204 41 RRFRGG--MQIFVESSDTIDNVKAKIQDKKGTPPDQQRQIFWFVF 83 (97)
Q Consensus 41 i~~~~g--~~i~v~~~~TV~~lK~~I~~~~gip~~~q~Lif~G~~ 83 (97)
++..+| +.+.+++++||+++|++|++++|+|+++|+|+|+|+.
T Consensus 3 vk~~~G~~~~l~v~~~~TV~~lK~~I~~~~gi~~~~q~Li~~G~~ 47 (70)
T cd01794 3 VRLSTGKDVKLSVSSKDTVGQLKKQLQAAEGVDPCCQRWFFSGKL 47 (70)
T ss_pred EEcCCCCEEEEEECCcChHHHHHHHHHHHhCCCHHHeEEEECCeE
Confidence 455555 5578899999999999999999999999999999999
No 15
>cd01798 parkin_N amino-terminal ubiquitin-like of parkin protein. parkin_N parkin protein is a RING-type E3 ubiquitin ligase with an amino-terminal ubiquitin-like (Ubl) domain and an RBR signature consisting of two RING finger domains separated by an IBR/DRIL domain. Naturally occurring mutations in parkin are thought to cause the disease AR_JP (autosomal-recessive juvenile parkinsonism). Parkin binds the Rpn10 subunit of 26S proteasomes through its Ubl domain.
Probab=99.28 E-value=1.1e-12 Score=75.95 Aligned_cols=42 Identities=38% Similarity=0.641 Sum_probs=39.0
Q ss_pred CccccCCCCcceEEEECCEEeCCCCCCccceec-ccceeeeee
Q 040204 1 IEDKEEILRDQQRFIFAGKRLEDGRTLVDYNIH-GSTLHSVRR 42 (97)
Q Consensus 1 i~~~~gip~~~Q~L~~~g~~L~d~~tL~~y~I~-~sti~l~i~ 42 (97)
|++++|+|+++|+|+|+|++|+|+.+|++|+|+ ++++|++.|
T Consensus 28 i~~~~gi~~~~q~Li~~G~~L~d~~~l~~~~i~~~stl~l~~~ 70 (70)
T cd01798 28 VAKRQGVPPDQLRVIFAGKELRNTTTIQECDLGQQSILHAVRR 70 (70)
T ss_pred HHHHHCCCHHHeEEEECCeECCCCCcHHHcCCCCCCEEEEEeC
Confidence 467899999999999999999999999999999 999999864
No 16
>cd01815 BMSC_UbP_N Ubiquitin-like domain of BMSC-UbP. BMSC_UbP (bone marrow stromal cell-derived ubiquitin-like protein) has an N-terminal ubiquitin-like (UBQ) domain and a C-terminal ubiquitin-associated (UBA) domain, a domain architecture similar to those of the UBIN, Chap1, and ubiquilin proteins. This CD represents the N-terminal ubiquitin-like domain.
Probab=99.26 E-value=1.5e-12 Score=76.81 Aligned_cols=40 Identities=33% Similarity=0.582 Sum_probs=35.7
Q ss_pred ccc--cCCC-CcceEEEECCEEeCCCCCCccceec-ccceeeee
Q 040204 2 EDK--EEIL-RDQQRFIFAGKRLEDGRTLVDYNIH-GSTLHSVR 41 (97)
Q Consensus 2 ~~~--~gip-~~~Q~L~~~g~~L~d~~tL~~y~I~-~sti~l~i 41 (97)
+++ +|+| +++|||+|+|+.|+|++||++|||+ ++++|++.
T Consensus 31 ~~~~~egi~~~dqQrLIy~GKiL~D~~TL~dygI~~gstlhLv~ 74 (75)
T cd01815 31 AAQLPDSLPDPELIDLIHCGRKLKDDQTLDFYGIQSGSTIHILR 74 (75)
T ss_pred HHhhccCCCChHHeEEEeCCcCCCCCCcHHHcCCCCCCEEEEEe
Confidence 445 5675 8999999999999999999999999 99999875
No 17
>cd01806 Nedd8 Nebb8-like ubiquitin protein. Nedd8 (also known as Rub1) has a single conserved ubiquitin-like domain that is part of a protein modification pathway similar to that of ubiquitin. Nedd8 modifies a family of molecular scaffold proteins called cullins that are responsible for assembling the ROC1/Rbx1 RING-based E3 ubiquitin ligases, of which several play a direct role in tumorigenesis.
Probab=99.25 E-value=4.4e-12 Score=73.97 Aligned_cols=46 Identities=48% Similarity=0.848 Sum_probs=42.5
Q ss_pred CccccCCCCcceEEEECCEEeCCCCCCccceec-ccceeeeeeeecc
Q 040204 1 IEDKEEILRDQQRFIFAGKRLEDGRTLVDYNIH-GSTLHSVRRFRGG 46 (97)
Q Consensus 1 i~~~~gip~~~Q~L~~~g~~L~d~~tL~~y~I~-~sti~l~i~~~~g 46 (97)
|++.+|+|++.|+|+|+|+.|+|+.+|++|+|. +++++++.+..+|
T Consensus 30 i~~~~g~~~~~qrL~~~g~~L~d~~tl~~~~i~~g~~i~l~~~~~gg 76 (76)
T cd01806 30 VEEKEGIPPQQQRLIYSGKQMNDDKTAADYKLEGGSVLHLVLALRGG 76 (76)
T ss_pred HhHhhCCChhhEEEEECCeEccCCCCHHHcCCCCCCEEEEEEEccCC
Confidence 456789999999999999999999999999999 9999999987765
No 18
>cd01800 SF3a120_C Ubiquitin-like domain of Mammalian splicing factor SF3a_120. SF3a120_C Mammalian splicing factor SF3a consists of three subunits of 60, 66, and 120 kDa and functions early during pre-mRNA splicing by converting the U2 snRNP to its active form. The 120kDa subunit (SF3a120) has a carboxy-terminal ubiquitin-like domain and two SWAP (suppressor-of-white-apricot) domains, referred to collectively as the SURP module, at its amino-terminus.
Probab=99.24 E-value=2.9e-12 Score=75.50 Aligned_cols=46 Identities=26% Similarity=0.533 Sum_probs=42.7
Q ss_pred CccccCCCCcceEEEECCEEeCCCCCCccceec-ccceeeeeeeecc
Q 040204 1 IEDKEEILRDQQRFIFAGKRLEDGRTLVDYNIH-GSTLHSVRRFRGG 46 (97)
Q Consensus 1 i~~~~gip~~~Q~L~~~g~~L~d~~tL~~y~I~-~sti~l~i~~~~g 46 (97)
|++.+|+|+++|+|+|+|+.|+|+++|++|+|. +++++++.+..+|
T Consensus 27 i~~~~gip~~~q~L~~~G~~L~d~~tL~~~~i~~g~~l~v~~~~~gg 73 (76)
T cd01800 27 IHEETGMPAGKQKLQYEGIFIKDSNSLAYYNLANGTIIHLQLKERGG 73 (76)
T ss_pred HHHHHCCCHHHEEEEECCEEcCCCCcHHHcCCCCCCEEEEEEecCCC
Confidence 456789999999999999999999999999999 9999999998776
No 19
>PTZ00044 ubiquitin; Provisional
Probab=99.23 E-value=1.9e-11 Score=71.60 Aligned_cols=46 Identities=24% Similarity=0.263 Sum_probs=41.1
Q ss_pred eeeeeeecc--eeeeeeccchhHHHHHhhhhhcCCCCCceEEEECeEe
Q 040204 38 HSVRRFRGG--MQIFVESSDTIDNVKAKIQDKKGTPPDQQRQIFWFVF 83 (97)
Q Consensus 38 ~l~i~~~~g--~~i~v~~~~TV~~lK~~I~~~~gip~~~q~Lif~G~~ 83 (97)
.+.++..+| ..+.+++++||+++|++|++.+|+|+++|+|+|+|+.
T Consensus 2 ~i~vk~~~G~~~~l~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~~g~~ 49 (76)
T PTZ00044 2 QILIKTLTGKKQSFNFEPDNTVQQVKMALQEKEGIDVKQIRLIYSGKQ 49 (76)
T ss_pred EEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCCCHHHeEEEECCEE
Confidence 466777666 4578899999999999999999999999999999999
No 20
>cd01791 Ubl5 UBL5 ubiquitin-like modifier. UBL5 (also known as HUB1) is a ubiquitin-like modifier that is both widely expressed and highly phylogenetically conserved. At the C-terminal end of the ubiquitin-like fold of UBL5 is a di-tyrosine motif followed by a single variable residue instead of the characteristic di-glycine found in all other ubiquitin-like modifiers. ULB5 interacts with a cyclin-like kinase called CLK4 but not with other cyclin-like kinase family members.
Probab=99.23 E-value=1.8e-11 Score=71.92 Aligned_cols=47 Identities=26% Similarity=0.436 Sum_probs=40.5
Q ss_pred eeeeeeeecc--eeeeeeccchhHHHHHhhhhhcCCCCCceEEEECeEe
Q 040204 37 LHSVRRFRGG--MQIFVESSDTIDNVKAKIQDKKGTPPDQQRQIFWFVF 83 (97)
Q Consensus 37 i~l~i~~~~g--~~i~v~~~~TV~~lK~~I~~~~gip~~~q~Lif~G~~ 83 (97)
+.+.++...| +.+.+++++||++||++|+++.|+|+++|||+|+|+.
T Consensus 2 ~~i~vkt~~Gk~~~~~v~~~~TV~~LK~~I~~~~~~~~~~qrLi~~Gk~ 50 (73)
T cd01791 2 IEVVCNDRLGKKVRVKCNPDDTIGDLKKLIAAQTGTRPEKIVLKKWYTI 50 (73)
T ss_pred EEEEEECCCCCEEEEEeCCCCcHHHHHHHHHHHhCCChHHEEEEeCCcC
Confidence 4556666555 5567899999999999999999999999999999988
No 21
>cd01803 Ubiquitin Ubiquitin. Ubiquitin (includes Ubq/RPL40e and Ubq/RPS27a fusions as well as homopolymeric multiubiquitin protein chains)
Probab=99.22 E-value=5.4e-12 Score=73.59 Aligned_cols=46 Identities=74% Similarity=1.063 Sum_probs=42.7
Q ss_pred CccccCCCCcceEEEECCEEeCCCCCCccceec-ccceeeeeeeecc
Q 040204 1 IEDKEEILRDQQRFIFAGKRLEDGRTLVDYNIH-GSTLHSVRRFRGG 46 (97)
Q Consensus 1 i~~~~gip~~~Q~L~~~g~~L~d~~tL~~y~I~-~sti~l~i~~~~g 46 (97)
|++.+|+|++.|+|+|+|+.|+|+.+|++|+++ ++++++.++..||
T Consensus 30 i~~~~g~~~~~q~L~~~g~~L~d~~~L~~~~i~~~~~i~l~~~~~gg 76 (76)
T cd01803 30 IQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76 (76)
T ss_pred HHHHhCCCHHHeEEEECCEECCCCCcHHHcCCCCCCEEEEEEEccCC
Confidence 456789999999999999999999999999999 9999999998775
No 22
>cd01810 ISG15_repeat2 ISG15 ubiquitin-like protein, second repeat of 2. ISG15 is a ubiquitin-like protein containing two ubiquitin homology domains and becomes conjugated to a variety of proteins when cells are treated with type I interferon or lipopolysaccharide. Although ISG15 has properties similar to those of other ubiquitin-like molecules, it is a unique member of the ubiquitin-like superfamily, whose expression and conjugation to target proteins are tightly regulated by specific signaling pathways, indicating it may have specialized functions in the immune system.
Probab=99.21 E-value=2.3e-11 Score=71.24 Aligned_cols=44 Identities=18% Similarity=0.115 Sum_probs=38.7
Q ss_pred eeeeecc--eeeeeeccchhHHHHHhhhhhcCCCCCceEEEECeEe
Q 040204 40 VRRFRGG--MQIFVESSDTIDNVKAKIQDKKGTPPDQQRQIFWFVF 83 (97)
Q Consensus 40 ~i~~~~g--~~i~v~~~~TV~~lK~~I~~~~gip~~~q~Lif~G~~ 83 (97)
+++...| ..+.+++++||+++|++|++.+|+|+++|+|+|+|+.
T Consensus 2 ~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gi~~~~q~L~~~G~~ 47 (74)
T cd01810 2 LVRNDKGRSSIYEVQLTQTVATLKQQVSQRERVQADQFWLSFEGRP 47 (74)
T ss_pred EEECCCCCEEEEEECCcChHHHHHHHHHHHhCCCHHHeEEEECCEE
Confidence 3455555 4588899999999999999999999999999999999
No 23
>KOG0003 consensus Ubiquitin/60s ribosomal protein L40 fusion [Translation, ribosomal structure and biogenesis]
Probab=99.20 E-value=4e-12 Score=79.16 Aligned_cols=50 Identities=56% Similarity=0.680 Sum_probs=42.6
Q ss_pred eeeeeecc-eeeeeeccchhHHHHHhhhhhcCCCCCceEEEECeEe--CCCcc
Q 040204 39 SVRRFRGG-MQIFVESSDTIDNVKAKIQDKKGTPPDQQRQIFWFVF--GWGSL 88 (97)
Q Consensus 39 l~i~~~~g-~~i~v~~~~TV~~lK~~I~~~~gip~~~q~Lif~G~~--~~~~~ 88 (97)
+.++..|. +.++++|++||.++|++|++++|+|+++|+|+|+|++ |.|+|
T Consensus 4 ~~~~~~GKT~~le~EpS~ti~~vKA~i~~~~Gi~~~~~~L~~~~k~LED~~Tl 56 (128)
T KOG0003|consen 4 FVKTLTGKTITLEVEPSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL 56 (128)
T ss_pred EEEEeeCceEEEEecccchHHHHHHHhccccCCCHHHHHHHhcccccccCCcc
Confidence 34455554 5578899999999999999999999999999999999 66765
No 24
>cd01798 parkin_N amino-terminal ubiquitin-like of parkin protein. parkin_N parkin protein is a RING-type E3 ubiquitin ligase with an amino-terminal ubiquitin-like (Ubl) domain and an RBR signature consisting of two RING finger domains separated by an IBR/DRIL domain. Naturally occurring mutations in parkin are thought to cause the disease AR_JP (autosomal-recessive juvenile parkinsonism). Parkin binds the Rpn10 subunit of 26S proteasomes through its Ubl domain.
Probab=99.19 E-value=3.4e-11 Score=69.72 Aligned_cols=44 Identities=30% Similarity=0.428 Sum_probs=38.5
Q ss_pred eeeeecc--eeeeeeccchhHHHHHhhhhhcCCCCCceEEEECeEe
Q 040204 40 VRRFRGG--MQIFVESSDTIDNVKAKIQDKKGTPPDQQRQIFWFVF 83 (97)
Q Consensus 40 ~i~~~~g--~~i~v~~~~TV~~lK~~I~~~~gip~~~q~Lif~G~~ 83 (97)
.++..+| +.+.+++++||+++|++|++++|+|+++|+|+|+|+.
T Consensus 2 ~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~q~Li~~G~~ 47 (70)
T cd01798 2 YVRTNTGHTFPVEVDPDTDIKQLKEVVAKRQGVPPDQLRVIFAGKE 47 (70)
T ss_pred EEEcCCCCEEEEEECCCChHHHHHHHHHHHHCCCHHHeEEEECCeE
Confidence 3455555 5577899999999999999999999999999999999
No 25
>cd01797 NIRF_N amino-terminal ubiquitin-like domain of Np95 and NIRF. NIRF_N This CD represents the amino-terminal ubiquitin-like domain of a family of nuclear proteins that includes Np95 and NIRF (Np95/ICBP90-like RING finger) protein. Both Np95 and NIRF have a domain architecture consisting of a ubiquitin-like domain, a PHD finger, a YDG/SRA domain, Rb-binding motifs and a RING finger domain. Both Np95 and NIRF are ubiquitin ligases that ubiquitinate PCNP (PEST-containing nuclear proteins). While Np95 is capable of binding histones, NIRF is involved in cell cycle regulation.
Probab=99.18 E-value=3.3e-11 Score=71.54 Aligned_cols=46 Identities=17% Similarity=0.198 Sum_probs=39.6
Q ss_pred eeeeeeecce---ee-eeeccchhHHHHHhhhhhcCCCCCceEEEECeEe
Q 040204 38 HSVRRFRGGM---QI-FVESSDTIDNVKAKIQDKKGTPPDQQRQIFWFVF 83 (97)
Q Consensus 38 ~l~i~~~~g~---~i-~v~~~~TV~~lK~~I~~~~gip~~~q~Lif~G~~ 83 (97)
.+.++...|. .+ .+++++||+++|++|++++|+|+++|+|+|+|++
T Consensus 2 ~I~vk~~~G~~~~~l~~v~~~~TV~~lK~~i~~~~gi~~~~QrLi~~Gk~ 51 (78)
T cd01797 2 WIQVRTMDGKETRTVDSLSRLTKVEELREKIQELFNVEPECQRLFYRGKQ 51 (78)
T ss_pred EEEEEcCCCCEEEEeeccCCcCcHHHHHHHHHHHhCCCHHHeEEEeCCEE
Confidence 4566766663 35 3689999999999999999999999999999999
No 26
>KOG0005 consensus Ubiquitin-like protein [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.17 E-value=3.2e-12 Score=71.90 Aligned_cols=40 Identities=50% Similarity=0.813 Sum_probs=37.7
Q ss_pred CccccCCCCcceEEEECCEEeCCCCCCccceec-ccceeee
Q 040204 1 IEDKEEILRDQQRFIFAGKRLEDGRTLVDYNIH-GSTLHSV 40 (97)
Q Consensus 1 i~~~~gip~~~Q~L~~~g~~L~d~~tL~~y~I~-~sti~l~ 40 (97)
|++++||||.+|||+|+|+++.|+.|-++|+.. ||.+|++
T Consensus 30 vEEkeGIPp~qqrli~~gkqm~DD~tA~~Y~~~~GSVlHlv 70 (70)
T KOG0005|consen 30 VEEKEGIPPQQQRLIYAGKQMNDDKTAAHYNLLGGSVLHLV 70 (70)
T ss_pred hhhhcCCCchhhhhhhccccccccccHHHhhhccceeEeeC
Confidence 578999999999999999999999999999999 9999874
No 27
>PF00240 ubiquitin: Ubiquitin family; InterPro: IPR000626 Ubiquitinylation is an ATP-dependent process that involves the action of at least three enzymes: a ubiquitin-activating enzyme (E1, IPR000011 from INTERPRO), a ubiquitin-conjugating enzyme (E2, IPR000608 from INTERPRO), and a ubiquitin ligase (E3, IPR000569 from INTERPRO, IPR003613 from INTERPRO), which work sequentially in a cascade. There are many different E3 ligases, which are responsible for the type of ubiquitin chain formed, the specificity of the target protein, and the regulation of the ubiquitinylation process []. Ubiquitinylation is an important regulatory tool that controls the concentration of key signalling proteins, such as those involved in cell cycle control, as well as removing misfolded, damaged or mutant proteins that could be harmful to the cell. Several ubiquitin-like molecules have been discovered, such as Ufm1 (IPR005375 from INTERPRO), SUMO1 (IPR003653 from INTERPRO), NEDD8, Rad23 (IPR004806 from INTERPRO), Elongin B and Parkin (IPR003977 from INTERPRO), the latter being involved in Parkinson's disease []. Ubiquitin is a protein of 76 amino acid residues, found in all eukaryotic cells and whose sequence is extremely well conserved from protozoan to vertebrates. Ubiquitin acts through its post-translational attachment (ubiquitinylation) to other proteins, where these modifications alter the function, location or trafficking of the protein, or targets it for destruction by the 26S proteasome []. The terminal glycine in the C-terminal 4-residue tail of ubiquitin can form an isopeptide bond with a lysine residue in the target protein, or with a lysine in another ubiquitin molecule to form a ubiquitin chain that attaches itself to a target protein. Ubiquitin has seven lysine residues, any one of which can be used to link ubiquitin molecules together, resulting in different structures that alter the target protein in different ways. It appears that Lys(11)-, Lys(29) and Lys(48)-linked poly-ubiquitin chains target the protein to the proteasome for degradation, while mono-ubiquitinylated and Lys(6)- or Lys(63)-linked poly-ubiquitin chains signal reversible modifications in protein activity, location or trafficking []. For example, Lys(63)-linked poly-ubiquitinylation is known to be involved in DNA damage tolerance, inflammatory response, protein trafficking and signal transduction through kinase activation []. In addition, the length of the ubiquitin chain alters the fate of the target protein. Regulatory proteins such as transcription factors and histones are frequent targets of ubquitinylation [].; GO: 0005515 protein binding; PDB: 2DZI_A 2XEW_E 3NOB_E 2KWU_B 2Y5B_F 3PHD_G 2KWV_B 2KOX_A 2XK5_B 3NHE_B ....
Probab=99.17 E-value=1.6e-11 Score=70.56 Aligned_cols=43 Identities=47% Similarity=0.750 Sum_probs=39.5
Q ss_pred CccccCCCCcceEEEECCEEeCCCCCCccceec-ccceeeeeee
Q 040204 1 IEDKEEILRDQQRFIFAGKRLEDGRTLVDYNIH-GSTLHSVRRF 43 (97)
Q Consensus 1 i~~~~gip~~~Q~L~~~g~~L~d~~tL~~y~I~-~sti~l~i~~ 43 (97)
|++..|+|++.|+|+|+|+.|+|+.+|++|+|. +++|+++++.
T Consensus 25 i~~~~~~~~~~~~L~~~G~~L~d~~tL~~~~i~~~~~I~l~~k~ 68 (69)
T PF00240_consen 25 IAEETGIPPEQQRLIYNGKELDDDKTLSDYGIKDGSTIHLVIKP 68 (69)
T ss_dssp HHHHHTSTGGGEEEEETTEEESTTSBTGGGTTSTTEEEEEEESS
T ss_pred cccccccccccceeeeeeecccCcCcHHHcCCCCCCEEEEEEec
Confidence 356789999999999999999999999999999 9999998864
No 28
>cd01808 hPLIC_N Ubiquitin-like domain of hPLIC-1 and hPLIC2. hPLIC-1 and hPLIC-2 (human homologs of the yeast ubiquitin-like Dsk2 protein) are type2 UBL's (ubiquitin-like) proteins that are thought to serve as adaptors that link the ubiquitination machinery to the proteasome. The hPLIC's have an N-terminal UBL domain that binds the S5a subunit of the proteasome and a C-terminal UBA (ubiquitin-associated) domain that binds a ubiquitylated protein.
Probab=99.16 E-value=1.2e-11 Score=71.86 Aligned_cols=42 Identities=40% Similarity=0.517 Sum_probs=38.5
Q ss_pred CccccCCCCcceEEEECCEEeCCCCCCccceec-ccceeeeee
Q 040204 1 IEDKEEILRDQQRFIFAGKRLEDGRTLVDYNIH-GSTLHSVRR 42 (97)
Q Consensus 1 i~~~~gip~~~Q~L~~~g~~L~d~~tL~~y~I~-~sti~l~i~ 42 (97)
|++.+|+|+++|+|+|+|+.|+|+.+|++|||+ ++++|++.+
T Consensus 29 I~~~~~i~~~~~~Li~~Gk~L~d~~tL~~~~i~~~stl~l~~~ 71 (71)
T cd01808 29 VSKKFKANQEQLVLIFAGKILKDTDTLTQHNIKDGLTVHLVIK 71 (71)
T ss_pred HHHHhCCCHHHEEEEECCeEcCCCCcHHHcCCCCCCEEEEEEC
Confidence 456789999999999999999999999999999 999999864
No 29
>cd01796 DDI1_N DNA damage inducible protein 1 ubiquitin-like domain. DDI1_N DDI1 (DNA damage inducible protein 1) has an amino-terminal ubiquitin-like domain, an retroviral protease-like (RVP-like) domain, and a UBA (ubiquitin-associated) domain. This CD represents the amino-terminal ubiquitin-like domain of DDI1.
Probab=99.14 E-value=6.9e-11 Score=68.84 Aligned_cols=37 Identities=24% Similarity=0.286 Sum_probs=35.2
Q ss_pred eeeeeeccchhHHHHHhhhhhcCCCCCceEEEECeEe
Q 040204 47 MQIFVESSDTIDNVKAKIQDKKGTPPDQQRQIFWFVF 83 (97)
Q Consensus 47 ~~i~v~~~~TV~~lK~~I~~~~gip~~~q~Lif~G~~ 83 (97)
..+.+++++||+++|++|++.+|+|+++|+|+|+|+.
T Consensus 12 ~~l~v~~~~TV~~lK~~I~~~~gip~~~q~Li~~Gk~ 48 (71)
T cd01796 12 FSLDVDPDLELENFKALCEAESGIPASQQQLIYNGRE 48 (71)
T ss_pred EEEEECCcCCHHHHHHHHHHHhCCCHHHeEEEECCeE
Confidence 5678899999999999999999999999999999998
No 30
>cd01804 midnolin_N Ubiquitin-like domain of midnolin. midnolin_N Midnolin (midbrain nucleolar protein) is expressed in the nucleolus and is thought to regulate genes involved in neurogenesis. Midnolin contains an amino-terminal ubiquitin-like domain.
Probab=99.14 E-value=1.5e-11 Score=72.89 Aligned_cols=46 Identities=24% Similarity=0.460 Sum_probs=41.9
Q ss_pred CccccCCCCcceEEEECCEEeCCCCCCccceec-ccceeeeeeeecce
Q 040204 1 IEDKEEILRDQQRFIFAGKRLEDGRTLVDYNIH-GSTLHSVRRFRGGM 47 (97)
Q Consensus 1 i~~~~gip~~~Q~L~~~g~~L~d~~tL~~y~I~-~sti~l~i~~~~g~ 47 (97)
|+++.|+|+++|+|+|+|+.|+|+ +|++|||. +++++++.+..+|+
T Consensus 31 I~~~~~~~~~~qrL~~~Gk~L~d~-~L~~~gi~~~~~i~l~~~~~~~~ 77 (78)
T cd01804 31 ISQRLKVPKERLALLHRETRLSSG-KLQDLGLGDGSKLTLVPTVEAGL 77 (78)
T ss_pred HHHHhCCChHHEEEEECCcCCCCC-cHHHcCCCCCCEEEEEeeccccC
Confidence 456779999999999999999999 99999999 99999999987773
No 31
>cd01791 Ubl5 UBL5 ubiquitin-like modifier. UBL5 (also known as HUB1) is a ubiquitin-like modifier that is both widely expressed and highly phylogenetically conserved. At the C-terminal end of the ubiquitin-like fold of UBL5 is a di-tyrosine motif followed by a single variable residue instead of the characteristic di-glycine found in all other ubiquitin-like modifiers. ULB5 interacts with a cyclin-like kinase called CLK4 but not with other cyclin-like kinase family members.
Probab=99.13 E-value=1.3e-11 Score=72.43 Aligned_cols=41 Identities=22% Similarity=0.184 Sum_probs=37.5
Q ss_pred CccccCCCCcceEEEECCEEeCCCCCCccceec-ccceeeee
Q 040204 1 IEDKEEILRDQQRFIFAGKRLEDGRTLVDYNIH-GSTLHSVR 41 (97)
Q Consensus 1 i~~~~gip~~~Q~L~~~g~~L~d~~tL~~y~I~-~sti~l~i 41 (97)
|+++.|+|+++|||+|+|+.|+|+.+|++|||. ++++||..
T Consensus 31 I~~~~~~~~~~qrLi~~Gk~L~D~~tL~~ygi~~~stv~l~~ 72 (73)
T cd01791 31 IAAQTGTRPEKIVLKKWYTIFKDHISLGDYEIHDGMNLELYY 72 (73)
T ss_pred HHHHhCCChHHEEEEeCCcCCCCCCCHHHcCCCCCCEEEEEe
Confidence 356679999999999999999999999999999 99999863
No 32
>cd01790 Herp_N Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain protein. Herp (Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain protein) , is an integral membrane protein that is induced by the endoplasmic reticulum (ER) stress response pathway and is involved in improving the balance of folding capacity and protein loads in the ER. Herp has an N-terminal ubiquitin-like domain that is involved in Herp degradation, but is not necessary for its enhancement of amyloid beta-protein generation.
Probab=99.11 E-value=1.4e-10 Score=69.16 Aligned_cols=47 Identities=11% Similarity=0.017 Sum_probs=37.9
Q ss_pred eeeeeeeecc----eeeeeeccchhHHHHHhhhhhcC--CCCCceEEEECeEe
Q 040204 37 LHSVRRFRGG----MQIFVESSDTIDNVKAKIQDKKG--TPPDQQRQIFWFVF 83 (97)
Q Consensus 37 i~l~i~~~~g----~~i~v~~~~TV~~lK~~I~~~~g--ip~~~q~Lif~G~~ 83 (97)
+.+.++.+++ +.+.+++++||.++|++|++..+ .|+++|+|||+||.
T Consensus 2 i~l~IK~~~~~~~~~~ve~~~~~TV~~lK~~i~~~~~~~~~~~~QrLIy~GKi 54 (79)
T cd01790 2 VTLLIKSPNQKYEDQTVSCFLNWTVGELKTHLSRVYPSKPLEQDQRLIYSGKL 54 (79)
T ss_pred eEEEEECCCCCeEEEEEecCCcChHHHHHHHHHHhcCCCCChhHeEEEEcCee
Confidence 4566777666 33445899999999999998763 56899999999998
No 33
>cd01803 Ubiquitin Ubiquitin. Ubiquitin (includes Ubq/RPL40e and Ubq/RPS27a fusions as well as homopolymeric multiubiquitin protein chains)
Probab=99.09 E-value=2.1e-10 Score=66.77 Aligned_cols=46 Identities=54% Similarity=0.655 Sum_probs=40.7
Q ss_pred eeeeeeecc--eeeeeeccchhHHHHHhhhhhcCCCCCceEEEECeEe
Q 040204 38 HSVRRFRGG--MQIFVESSDTIDNVKAKIQDKKGTPPDQQRQIFWFVF 83 (97)
Q Consensus 38 ~l~i~~~~g--~~i~v~~~~TV~~lK~~I~~~~gip~~~q~Lif~G~~ 83 (97)
.+.++..+| +.+.+++++||+++|++|++++|+|+++|+|+|+|+.
T Consensus 2 ~i~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~g~~~~~q~L~~~g~~ 49 (76)
T cd01803 2 QIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQ 49 (76)
T ss_pred EEEEEcCCCCEEEEEECCcCcHHHHHHHHHHHhCCCHHHeEEEECCEE
Confidence 466676665 5578899999999999999999999999999999998
No 34
>cd01805 RAD23_N Ubiquitin-like domain of RAD23. RAD23 belongs to a family of adaptor molecules having affinity for both the proteasome and ubiquitinylated proteins and thought to shuttle these ubiquitinylated proteins to the proteasome for destruction. RAD23 interacts with ubiquitin through its C-terminal ubiquitin-associated domains (UBA) and with the proteasome through its N-terminal ubiquitin-like domain (UBL).
Probab=99.09 E-value=2.7e-10 Score=66.73 Aligned_cols=46 Identities=30% Similarity=0.455 Sum_probs=40.4
Q ss_pred eeeeeeecc--eeeeeeccchhHHHHHhhhhhcCC--CCCceEEEECeEe
Q 040204 38 HSVRRFRGG--MQIFVESSDTIDNVKAKIQDKKGT--PPDQQRQIFWFVF 83 (97)
Q Consensus 38 ~l~i~~~~g--~~i~v~~~~TV~~lK~~I~~~~gi--p~~~q~Lif~G~~ 83 (97)
.+.++..+| +.+.+++++||.++|++|++.+|+ |+++|+|+|+|+.
T Consensus 2 ~i~vk~~~g~~~~l~v~~~~TV~~lK~~i~~~~~i~~~~~~q~L~~~G~~ 51 (77)
T cd01805 2 KITFKTLKQQTFPIEVDPDDTVAELKEKIEEEKGCDYPPEQQKLIYSGKI 51 (77)
T ss_pred EEEEEeCCCCEEEEEECCCCcHHHHHHHHHHhhCCCCChhHeEEEECCEE
Confidence 456666666 457789999999999999999999 9999999999998
No 35
>cd01809 Scythe_N Ubiquitin-like domain of Scythe protein. Scythe protein (also known as Bat3) is an apoptotic regulator that is highly conserved in eukaryotes and contains a ubiquitin-like domain near its N-terminus. Scythe binds reaper, a potent apoptotic inducer, and Scythe/Reaper are thought to signal apoptosis, in part through regulating the folding and activity of apoptotic signaling molecules.
Probab=99.09 E-value=3.8e-11 Score=69.28 Aligned_cols=42 Identities=40% Similarity=0.748 Sum_probs=38.2
Q ss_pred CccccCCCCcceEEEECCEEeCCCCCCccceec-ccceeeeee
Q 040204 1 IEDKEEILRDQQRFIFAGKRLEDGRTLVDYNIH-GSTLHSVRR 42 (97)
Q Consensus 1 i~~~~gip~~~Q~L~~~g~~L~d~~tL~~y~I~-~sti~l~i~ 42 (97)
|++.+|+|++.|+|+|+|+.|+|+.+|++|||+ +++++++.+
T Consensus 30 i~~~~gi~~~~q~L~~~g~~L~d~~~L~~~~i~~~~~l~l~~~ 72 (72)
T cd01809 30 IAEEVGIPVEQQRLIYSGRVLKDDETLSEYKVEDGHTIHLVKR 72 (72)
T ss_pred HHHHHCcCHHHeEEEECCEECCCcCcHHHCCCCCCCEEEEEeC
Confidence 356789999999999999999999999999999 999998764
No 36
>cd01805 RAD23_N Ubiquitin-like domain of RAD23. RAD23 belongs to a family of adaptor molecules having affinity for both the proteasome and ubiquitinylated proteins and thought to shuttle these ubiquitinylated proteins to the proteasome for destruction. RAD23 interacts with ubiquitin through its C-terminal ubiquitin-associated domains (UBA) and with the proteasome through its N-terminal ubiquitin-like domain (UBL).
Probab=99.08 E-value=6e-11 Score=69.55 Aligned_cols=43 Identities=30% Similarity=0.468 Sum_probs=39.1
Q ss_pred CccccCC--CCcceEEEECCEEeCCCCCCccceec-ccceeeeeee
Q 040204 1 IEDKEEI--LRDQQRFIFAGKRLEDGRTLVDYNIH-GSTLHSVRRF 43 (97)
Q Consensus 1 i~~~~gi--p~~~Q~L~~~g~~L~d~~tL~~y~I~-~sti~l~i~~ 43 (97)
|++.+|+ |+++|+|+|+|+.|+|+.+|++|||+ +++++++++.
T Consensus 30 i~~~~~i~~~~~~q~L~~~G~~L~d~~~L~~~~i~~~~~i~~~~~~ 75 (77)
T cd01805 30 IEEEKGCDYPPEQQKLIYSGKILKDDTTLEEYKIDEKDFVVVMVSK 75 (77)
T ss_pred HHHhhCCCCChhHeEEEECCEEccCCCCHHHcCCCCCCEEEEEEec
Confidence 3567898 99999999999999999999999999 9999988764
No 37
>cd01806 Nedd8 Nebb8-like ubiquitin protein. Nedd8 (also known as Rub1) has a single conserved ubiquitin-like domain that is part of a protein modification pathway similar to that of ubiquitin. Nedd8 modifies a family of molecular scaffold proteins called cullins that are responsible for assembling the ROC1/Rbx1 RING-based E3 ubiquitin ligases, of which several play a direct role in tumorigenesis.
Probab=99.08 E-value=3.3e-10 Score=65.97 Aligned_cols=46 Identities=28% Similarity=0.489 Sum_probs=40.3
Q ss_pred eeeeeeecc--eeeeeeccchhHHHHHhhhhhcCCCCCceEEEECeEe
Q 040204 38 HSVRRFRGG--MQIFVESSDTIDNVKAKIQDKKGTPPDQQRQIFWFVF 83 (97)
Q Consensus 38 ~l~i~~~~g--~~i~v~~~~TV~~lK~~I~~~~gip~~~q~Lif~G~~ 83 (97)
.+.++..+| +.+.+++++||++||++|+++.|+|++.|+|+|+|+.
T Consensus 2 ~i~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~g~~~~~qrL~~~g~~ 49 (76)
T cd01806 2 LIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQ 49 (76)
T ss_pred EEEEEeCCCCEEEEEECCCCCHHHHHHHHhHhhCCChhhEEEEECCeE
Confidence 456666666 4567899999999999999999999999999999998
No 38
>cd01796 DDI1_N DNA damage inducible protein 1 ubiquitin-like domain. DDI1_N DDI1 (DNA damage inducible protein 1) has an amino-terminal ubiquitin-like domain, an retroviral protease-like (RVP-like) domain, and a UBA (ubiquitin-associated) domain. This CD represents the amino-terminal ubiquitin-like domain of DDI1.
Probab=99.08 E-value=3.8e-11 Score=69.95 Aligned_cols=40 Identities=30% Similarity=0.467 Sum_probs=36.0
Q ss_pred CccccCCCCcceEEEECCEEeCCC-CCCccceec-ccceeee
Q 040204 1 IEDKEEILRDQQRFIFAGKRLEDG-RTLVDYNIH-GSTLHSV 40 (97)
Q Consensus 1 i~~~~gip~~~Q~L~~~g~~L~d~-~tL~~y~I~-~sti~l~ 40 (97)
|++.+|+|+++|+|+|+|++|+|+ .+|++|+|+ ++++++.
T Consensus 29 I~~~~gip~~~q~Li~~Gk~L~D~~~~L~~~gi~~~~~l~l~ 70 (71)
T cd01796 29 CEAESGIPASQQQLIYNGRELVDNKRLLALYGVKDGDLVVLR 70 (71)
T ss_pred HHHHhCCCHHHeEEEECCeEccCCcccHHHcCCCCCCEEEEe
Confidence 467899999999999999999987 689999999 9999863
No 39
>cd01808 hPLIC_N Ubiquitin-like domain of hPLIC-1 and hPLIC2. hPLIC-1 and hPLIC-2 (human homologs of the yeast ubiquitin-like Dsk2 protein) are type2 UBL's (ubiquitin-like) proteins that are thought to serve as adaptors that link the ubiquitination machinery to the proteasome. The hPLIC's have an N-terminal UBL domain that binds the S5a subunit of the proteasome and a C-terminal UBA (ubiquitin-associated) domain that binds a ubiquitylated protein.
Probab=99.06 E-value=3.3e-10 Score=65.75 Aligned_cols=45 Identities=13% Similarity=0.098 Sum_probs=38.5
Q ss_pred eeeeeecc-eeeeeeccchhHHHHHhhhhhcCCCCCceEEEECeEe
Q 040204 39 SVRRFRGG-MQIFVESSDTIDNVKAKIQDKKGTPPDQQRQIFWFVF 83 (97)
Q Consensus 39 l~i~~~~g-~~i~v~~~~TV~~lK~~I~~~~gip~~~q~Lif~G~~ 83 (97)
+.++...| ..+.+++++||+++|++|++++|+|+++|+|+|+|+.
T Consensus 3 i~vk~~~g~~~l~v~~~~TV~~lK~~I~~~~~i~~~~~~Li~~Gk~ 48 (71)
T cd01808 3 VTVKTPKDKEEIEIAEDASVKDFKEAVSKKFKANQEQLVLIFAGKI 48 (71)
T ss_pred EEEEcCCCCEEEEECCCChHHHHHHHHHHHhCCCHHHEEEEECCeE
Confidence 34444444 5688899999999999999999999999999999998
No 40
>cd01763 Sumo Small ubiquitin-related modifier (SUMO). Small ubiquitin-related modifier (SUMO) proteins are conjugated to numerous intracellular targets and serve to modulate protein interaction, localization, activity or stability. SUMO (also known as "Smt3" and "sentrin" in other organisms) is linked to several different pathways, including nucleocytoplasmic transport. Attachment of SUMO to targets proteins is stimulated by PIAS (Protein inhibitor of activated STATs) proteins which serve as E3-like ligases.
Probab=99.05 E-value=1.2e-10 Score=70.35 Aligned_cols=45 Identities=24% Similarity=0.519 Sum_probs=42.3
Q ss_pred ccccCCCCcceEEEECCEEeCCCCCCccceec-ccceeeeeeeecc
Q 040204 2 EDKEEILRDQQRFIFAGKRLEDGRTLVDYNIH-GSTLHSVRRFRGG 46 (97)
Q Consensus 2 ~~~~gip~~~Q~L~~~g~~L~d~~tL~~y~I~-~sti~l~i~~~~g 46 (97)
+++.|+|+++|+|+|+|++|+++.|+++|++. +++|+++.+..+|
T Consensus 42 ~~~~gi~~~~~rf~f~G~~L~~~~T~~~l~m~d~d~I~v~l~l~GG 87 (87)
T cd01763 42 CQRQGLSMNSVRFLFDGQRIRDNQTPDDLGMEDGDEIEVMLEQTGG 87 (87)
T ss_pred HHHhCCCccceEEEECCeECCCCCCHHHcCCCCCCEEEEEEecccC
Confidence 56789999999999999999999999999999 9999999988776
No 41
>cd01804 midnolin_N Ubiquitin-like domain of midnolin. midnolin_N Midnolin (midbrain nucleolar protein) is expressed in the nucleolus and is thought to regulate genes involved in neurogenesis. Midnolin contains an amino-terminal ubiquitin-like domain.
Probab=99.05 E-value=3.8e-10 Score=66.85 Aligned_cols=47 Identities=13% Similarity=0.225 Sum_probs=40.5
Q ss_pred eeeeeeeecc--eeeeeeccchhHHHHHhhhhhcCCCCCceEEEECeEe
Q 040204 37 LHSVRRFRGG--MQIFVESSDTIDNVKAKIQDKKGTPPDQQRQIFWFVF 83 (97)
Q Consensus 37 i~l~i~~~~g--~~i~v~~~~TV~~lK~~I~~~~gip~~~q~Lif~G~~ 83 (97)
+.+.++...| ..+.+++++||++||++|+++.|+|+++|+|+|+|+.
T Consensus 2 m~I~Vk~~~G~~~~l~v~~~~TV~~LK~~I~~~~~~~~~~qrL~~~Gk~ 50 (78)
T cd01804 2 MNLNIHSTTGTRFDLSVPPDETVEGLKKRISQRLKVPKERLALLHRETR 50 (78)
T ss_pred eEEEEEECCCCEEEEEECCcCHHHHHHHHHHHHhCCChHHEEEEECCcC
Confidence 3455666555 5688899999999999999999999999999999988
No 42
>cd01809 Scythe_N Ubiquitin-like domain of Scythe protein. Scythe protein (also known as Bat3) is an apoptotic regulator that is highly conserved in eukaryotes and contains a ubiquitin-like domain near its N-terminus. Scythe binds reaper, a potent apoptotic inducer, and Scythe/Reaper are thought to signal apoptosis, in part through regulating the folding and activity of apoptotic signaling molecules.
Probab=99.03 E-value=6.1e-10 Score=64.19 Aligned_cols=46 Identities=26% Similarity=0.252 Sum_probs=39.9
Q ss_pred eeeeeeecc--eeeeeeccchhHHHHHhhhhhcCCCCCceEEEECeEe
Q 040204 38 HSVRRFRGG--MQIFVESSDTIDNVKAKIQDKKGTPPDQQRQIFWFVF 83 (97)
Q Consensus 38 ~l~i~~~~g--~~i~v~~~~TV~~lK~~I~~~~gip~~~q~Lif~G~~ 83 (97)
.+.++...| ..+.+++++||+++|++|++..|+|++.|+|+|+|+.
T Consensus 2 ~i~vk~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~~g~~ 49 (72)
T cd01809 2 EIKVKTLDSQTHTFTVEEEITVLDLKEKIAEEVGIPVEQQRLIYSGRV 49 (72)
T ss_pred EEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEEECCEE
Confidence 455666555 5577899999999999999999999999999999998
No 43
>PF00240 ubiquitin: Ubiquitin family; InterPro: IPR000626 Ubiquitinylation is an ATP-dependent process that involves the action of at least three enzymes: a ubiquitin-activating enzyme (E1, IPR000011 from INTERPRO), a ubiquitin-conjugating enzyme (E2, IPR000608 from INTERPRO), and a ubiquitin ligase (E3, IPR000569 from INTERPRO, IPR003613 from INTERPRO), which work sequentially in a cascade. There are many different E3 ligases, which are responsible for the type of ubiquitin chain formed, the specificity of the target protein, and the regulation of the ubiquitinylation process []. Ubiquitinylation is an important regulatory tool that controls the concentration of key signalling proteins, such as those involved in cell cycle control, as well as removing misfolded, damaged or mutant proteins that could be harmful to the cell. Several ubiquitin-like molecules have been discovered, such as Ufm1 (IPR005375 from INTERPRO), SUMO1 (IPR003653 from INTERPRO), NEDD8, Rad23 (IPR004806 from INTERPRO), Elongin B and Parkin (IPR003977 from INTERPRO), the latter being involved in Parkinson's disease []. Ubiquitin is a protein of 76 amino acid residues, found in all eukaryotic cells and whose sequence is extremely well conserved from protozoan to vertebrates. Ubiquitin acts through its post-translational attachment (ubiquitinylation) to other proteins, where these modifications alter the function, location or trafficking of the protein, or targets it for destruction by the 26S proteasome []. The terminal glycine in the C-terminal 4-residue tail of ubiquitin can form an isopeptide bond with a lysine residue in the target protein, or with a lysine in another ubiquitin molecule to form a ubiquitin chain that attaches itself to a target protein. Ubiquitin has seven lysine residues, any one of which can be used to link ubiquitin molecules together, resulting in different structures that alter the target protein in different ways. It appears that Lys(11)-, Lys(29) and Lys(48)-linked poly-ubiquitin chains target the protein to the proteasome for degradation, while mono-ubiquitinylated and Lys(6)- or Lys(63)-linked poly-ubiquitin chains signal reversible modifications in protein activity, location or trafficking []. For example, Lys(63)-linked poly-ubiquitinylation is known to be involved in DNA damage tolerance, inflammatory response, protein trafficking and signal transduction through kinase activation []. In addition, the length of the ubiquitin chain alters the fate of the target protein. Regulatory proteins such as transcription factors and histones are frequent targets of ubquitinylation [].; GO: 0005515 protein binding; PDB: 2DZI_A 2XEW_E 3NOB_E 2KWU_B 2Y5B_F 3PHD_G 2KWV_B 2KOX_A 2XK5_B 3NHE_B ....
Probab=99.02 E-value=7.9e-10 Score=63.40 Aligned_cols=42 Identities=33% Similarity=0.492 Sum_probs=37.9
Q ss_pred eeeeeeccchhHHHHHhhhhhcCCCCCceEEEECeEe--CCCcc
Q 040204 47 MQIFVESSDTIDNVKAKIQDKKGTPPDQQRQIFWFVF--GWGSL 88 (97)
Q Consensus 47 ~~i~v~~~~TV~~lK~~I~~~~gip~~~q~Lif~G~~--~~~~~ 88 (97)
+.+.|++++||.+||++|++..|+|++.|+|+|+|+. |..+|
T Consensus 8 ~~~~v~~~~tV~~lK~~i~~~~~~~~~~~~L~~~G~~L~d~~tL 51 (69)
T PF00240_consen 8 FTLEVDPDDTVADLKQKIAEETGIPPEQQRLIYNGKELDDDKTL 51 (69)
T ss_dssp EEEEEETTSBHHHHHHHHHHHHTSTGGGEEEEETTEEESTTSBT
T ss_pred EEEEECCCCCHHHhhhhcccccccccccceeeeeeecccCcCcH
Confidence 5678899999999999999999999999999999999 44554
No 44
>cd01813 UBP_N UBP ubiquitin processing protease. The UBP (ubiquitin processing protease) domain (also referred to as USP which stands for "ubiquitin-specific protease") is present at in a large family of cysteine proteases that specifically cleave ubiquitin conjugates. This family includes Rpn11, UBP6 (USP14), USP7 (HAUSP). This domain is closely related to the amino-terminal ubiquitin-like domain of BAG1 (Bcl2-associated anthanogene1) protein and is found only in eukaryotes.
Probab=99.01 E-value=5.6e-10 Score=65.63 Aligned_cols=45 Identities=20% Similarity=0.211 Sum_probs=38.5
Q ss_pred eeeeeecc-eeeeeeccchhHHHHHhhhhhcCCCCCceEEEE---CeEe
Q 040204 39 SVRRFRGG-MQIFVESSDTIDNVKAKIQDKKGTPPDQQRQIF---WFVF 83 (97)
Q Consensus 39 l~i~~~~g-~~i~v~~~~TV~~lK~~I~~~~gip~~~q~Lif---~G~~ 83 (97)
+.++..+. +.+.|++++||+++|++|++.+|+|+++|+|+| +|+.
T Consensus 3 i~vk~~g~~~~v~v~~~~Tv~~lK~~i~~~tgvp~~~QKLi~~~~~Gk~ 51 (74)
T cd01813 3 VIVKWGGQEYSVTTLSEDTVLDLKQFIKTLTGVLPERQKLLGLKVKGKP 51 (74)
T ss_pred EEEEECCEEEEEEECCCCCHHHHHHHHHHHHCCCHHHEEEEeecccCCc
Confidence 44555444 568889999999999999999999999999997 8887
No 45
>KOG0004 consensus Ubiquitin/40S ribosomal protein S27a fusion [Translation, ribosomal structure and biogenesis]
Probab=98.99 E-value=1.4e-10 Score=76.26 Aligned_cols=39 Identities=62% Similarity=0.699 Sum_probs=35.9
Q ss_pred eeeeeeccchhHHHHHhhhhhcCCCCCceEEEECeEeCC
Q 040204 47 MQIFVESSDTIDNVKAKIQDKKGTPPDQQRQIFWFVFGW 85 (97)
Q Consensus 47 ~~i~v~~~~TV~~lK~~I~~~~gip~~~q~Lif~G~~~~ 85 (97)
+...|++++||..+|++||+++|||+++|||||+|++++
T Consensus 13 i~~eve~~~ti~~~Kakiq~~egIp~dqqrlifag~qLe 51 (156)
T KOG0004|consen 13 ITLEVEANDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLE 51 (156)
T ss_pred eeeeecccccHHHHHHhhhcccCCCchhhhhhhhhcccc
Confidence 556779999999999999999999999999999999944
No 46
>cd01792 ISG15_repeat1 ISG15 ubiquitin-like protein, first repeat of 2. ISG15 is a ubiquitin-like protein containing two ubiquitin homology domains that becomes conjugated to a variety of proteins when cells are treated with type I interferon or lipopolysaccharide. Although ISG15 has properties similar to those of other ubiquitin-like molecules, it is a unique member of the ubiquitin-like superfamily, whose expression and conjugation to target proteins are tightly regulated by specific signaling pathways, indicating it may have specialized functions in the immune system.
Probab=98.99 E-value=5.7e-10 Score=66.28 Aligned_cols=47 Identities=26% Similarity=0.278 Sum_probs=40.6
Q ss_pred eeeeeeeecc--eeeeeeccchhHHHHHhhhhhcCCCCCceEE--EECeEe
Q 040204 37 LHSVRRFRGG--MQIFVESSDTIDNVKAKIQDKKGTPPDQQRQ--IFWFVF 83 (97)
Q Consensus 37 i~l~i~~~~g--~~i~v~~~~TV~~lK~~I~~~~gip~~~q~L--if~G~~ 83 (97)
+.+.++..+| +.+.+++++||++||++|+++.|+|+++|+| +|+|+.
T Consensus 3 ~~i~Vk~~~G~~~~~~v~~~~TV~~lK~~I~~~~~i~~~~qrL~~~~~G~~ 53 (80)
T cd01792 3 WDLKVKMLGGNEFLVSLRDSMTVSELKQQIAQKIGVPAFQQRLAHLDSREV 53 (80)
T ss_pred eEEEEEeCCCCEEEEEcCCCCcHHHHHHHHHHHhCCCHHHEEEEeccCCCC
Confidence 5567777766 4456789999999999999999999999999 999987
No 47
>cd01812 BAG1_N Ubiquitin-like domain of BAG1. BAG1_N N-terminal ubiquitin-like (Ubl) domain of the BAG1 protein. This domain occurs together with the BAG domain and is closely related to the Ubl domain of a family of deubiquitinases that includes Rpn11, UBP6 (USP14), USP7 (HAUSP).
Probab=98.98 E-value=8.5e-10 Score=63.54 Aligned_cols=46 Identities=20% Similarity=0.234 Sum_probs=39.5
Q ss_pred eeeeeeecc-eeeeeeccchhHHHHHhhhhhcCCCCCceEEEECeEe
Q 040204 38 HSVRRFRGG-MQIFVESSDTIDNVKAKIQDKKGTPPDQQRQIFWFVF 83 (97)
Q Consensus 38 ~l~i~~~~g-~~i~v~~~~TV~~lK~~I~~~~gip~~~q~Lif~G~~ 83 (97)
.+.++..+. ..+.+++++||+++|++|++.+|+|++.|+|+|+|+.
T Consensus 2 ~i~vk~~g~~~~i~v~~~~tv~~lK~~i~~~~gi~~~~q~L~~~g~~ 48 (71)
T cd01812 2 RVRVKHGGESHDLSISSQATFGDLKKMLAPVTGVEPRDQKLIFKGKE 48 (71)
T ss_pred EEEEEECCEEEEEEECCCCcHHHHHHHHHHhhCCChHHeEEeeCCcc
Confidence 455555543 5577899999999999999999999999999999998
No 48
>cd01814 NTGP5 Ubiquitin-like NTGP5 and ATGP4. NTGP5 and ATGP4 are plant-specific isoprenylated GTP-binding proteins with a single fold that resembles ubiquitin. The function of these proteins is unknown.
Probab=98.97 E-value=2.6e-10 Score=71.72 Aligned_cols=43 Identities=30% Similarity=0.251 Sum_probs=38.1
Q ss_pred cccCCC--CcceEEEECCEEeCCCCCCccce------ec-ccceeeeeeeec
Q 040204 3 DKEEIL--RDQQRFIFAGKRLEDGRTLVDYN------IH-GSTLHSVRRFRG 45 (97)
Q Consensus 3 ~~~gip--~~~Q~L~~~g~~L~d~~tL~~y~------I~-~sti~l~i~~~~ 45 (97)
.++|+| +++|+|+|+||.|+|++||++|+ +. .+|+|++++...
T Consensus 42 ~ke~~P~~~~~qKLIysGKiLeD~~TL~d~~~p~g~~~~~~~TmHvvlr~~~ 93 (113)
T cd01814 42 DKEVGPKTVNEVKLISAGKILENSKTVGECRSPVGDIAGGVITMHVVVQPPL 93 (113)
T ss_pred ccccCCCCHHHeEEEeCCeecCCCCcHHHhCCcccccCCCceEEEEEecCCC
Confidence 457888 99999999999999999999999 66 789999998654
No 49
>cd01800 SF3a120_C Ubiquitin-like domain of Mammalian splicing factor SF3a_120. SF3a120_C Mammalian splicing factor SF3a consists of three subunits of 60, 66, and 120 kDa and functions early during pre-mRNA splicing by converting the U2 snRNP to its active form. The 120kDa subunit (SF3a120) has a carboxy-terminal ubiquitin-like domain and two SWAP (suppressor-of-white-apricot) domains, referred to collectively as the SURP module, at its amino-terminus.
Probab=98.97 E-value=7.6e-10 Score=65.12 Aligned_cols=37 Identities=24% Similarity=0.476 Sum_probs=34.9
Q ss_pred eeeeeeccchhHHHHHhhhhhcCCCCCceEEEECeEe
Q 040204 47 MQIFVESSDTIDNVKAKIQDKKGTPPDQQRQIFWFVF 83 (97)
Q Consensus 47 ~~i~v~~~~TV~~lK~~I~~~~gip~~~q~Lif~G~~ 83 (97)
+.+.+++++||+++|++|++.+|+|+++|+|+|+|+.
T Consensus 10 ~~l~v~~~~TV~~lK~~i~~~~gip~~~q~L~~~G~~ 46 (76)
T cd01800 10 LNFTLQLSDPVSVLKVKIHEETGMPAGKQKLQYEGIF 46 (76)
T ss_pred EEEEECCCCcHHHHHHHHHHHHCCCHHHEEEEECCEE
Confidence 4578899999999999999999999999999999997
No 50
>cd01814 NTGP5 Ubiquitin-like NTGP5 and ATGP4. NTGP5 and ATGP4 are plant-specific isoprenylated GTP-binding proteins with a single fold that resembles ubiquitin. The function of these proteins is unknown.
Probab=98.96 E-value=7.4e-10 Score=69.67 Aligned_cols=53 Identities=17% Similarity=0.155 Sum_probs=42.4
Q ss_pred ceeeeeeeeccee---eeeeccchhHHHHHhhh-----hhcCCC--CCceEEEECeEe--CCCcc
Q 040204 36 TLHSVRRFRGGMQ---IFVESSDTIDNVKAKIQ-----DKKGTP--PDQQRQIFWFVF--GWGSL 88 (97)
Q Consensus 36 ti~l~i~~~~g~~---i~v~~~~TV~~lK~~I~-----~~~gip--~~~q~Lif~G~~--~~~~~ 88 (97)
.+.+..|...|.. ..+.+++||++||++|+ +++|+| +++|+|||+||+ |..+|
T Consensus 4 ~~e~kfrl~dg~digp~~~~~sdTV~~lKekI~~~~p~~ke~~P~~~~~qKLIysGKiLeD~~TL 68 (113)
T cd01814 4 QIEIKFRLYDGSDIGPKRYPAATTVDFLKERVVSQWPKDKEVGPKTVNEVKLISAGKILENSKTV 68 (113)
T ss_pred cEEEEEEccCCCccCccccChhhHHHHHHHHHHHhcccccccCCCCHHHeEEEeCCeecCCCCcH
Confidence 4667778888844 35589999999999999 666777 999999999999 43443
No 51
>cd01792 ISG15_repeat1 ISG15 ubiquitin-like protein, first repeat of 2. ISG15 is a ubiquitin-like protein containing two ubiquitin homology domains that becomes conjugated to a variety of proteins when cells are treated with type I interferon or lipopolysaccharide. Although ISG15 has properties similar to those of other ubiquitin-like molecules, it is a unique member of the ubiquitin-like superfamily, whose expression and conjugation to target proteins are tightly regulated by specific signaling pathways, indicating it may have specialized functions in the immune system.
Probab=98.96 E-value=1.6e-10 Score=68.65 Aligned_cols=43 Identities=33% Similarity=0.327 Sum_probs=39.2
Q ss_pred CccccCCCCcceEE--EECCEEeCCCCCCccceec-ccceeeeeee
Q 040204 1 IEDKEEILRDQQRF--IFAGKRLEDGRTLVDYNIH-GSTLHSVRRF 43 (97)
Q Consensus 1 i~~~~gip~~~Q~L--~~~g~~L~d~~tL~~y~I~-~sti~l~i~~ 43 (97)
|++++|+|+++|+| +|+|+.|.|+.+|++|||. +++++++++.
T Consensus 32 I~~~~~i~~~~qrL~~~~~G~~L~D~~tL~~~gi~~gs~l~l~~~~ 77 (80)
T cd01792 32 IAQKIGVPAFQQRLAHLDSREVLQDGVPLVSQGLGPGSTVLLVVQN 77 (80)
T ss_pred HHHHhCCCHHHEEEEeccCCCCCCCCCCHHHcCCCCCCEEEEEEEc
Confidence 45678999999999 8899999999999999999 9999999873
No 52
>cd01799 Hoil1_N Ubiquitin-like domain of HOIL1. HOIL1_N HOIL-1 (heme-oxidized IRP2 ubiquitin ligase-1) is an E3 ubiquitin-protein ligase that recognizes heme-oxidized IRP2 (iron regulatory protein2) and is thought to affect the turnover of oxidatively damaged proteins. Hoil-1 has an amino-terminal ubiquitin-like domain as well as an RBR signature consisting of two RING finger domains separated by an IBR/DRIL domain.
Probab=98.93 E-value=9e-10 Score=64.95 Aligned_cols=36 Identities=25% Similarity=0.204 Sum_probs=33.9
Q ss_pred eeeeeeccchhHHHHHhhhhhcCCCCCceEEEECeEe
Q 040204 47 MQIFVESSDTIDNVKAKIQDKKGTPPDQQRQIFWFVF 83 (97)
Q Consensus 47 ~~i~v~~~~TV~~lK~~I~~~~gip~~~q~Lif~G~~ 83 (97)
..+.|++++||++||++|++++|+||++|+| |+|+.
T Consensus 15 ~~l~v~~~~TV~~lK~kI~~~~gip~~~QrL-~~G~~ 50 (75)
T cd01799 15 IWLTVRPDMTVAQLKDKVFLDYGFPPAVQRW-VIGQR 50 (75)
T ss_pred EEEEECCCCcHHHHHHHHHHHHCcCHHHEEE-EcCCe
Confidence 5678899999999999999999999999999 99987
No 53
>smart00213 UBQ Ubiquitin homologues. Ubiquitin-mediated proteolysis is involved in the regulated turnover of proteins required for controlling cell cycle progression
Probab=98.92 E-value=3e-09 Score=59.57 Aligned_cols=46 Identities=28% Similarity=0.352 Sum_probs=40.0
Q ss_pred eeeeeeec-ceeeeeeccchhHHHHHhhhhhcCCCCCceEEEECeEe
Q 040204 38 HSVRRFRG-GMQIFVESSDTIDNVKAKIQDKKGTPPDQQRQIFWFVF 83 (97)
Q Consensus 38 ~l~i~~~~-g~~i~v~~~~TV~~lK~~I~~~~gip~~~q~Lif~G~~ 83 (97)
.+.++..+ ...+.|++++||++||++|++..|+|++.|+|+|+|+.
T Consensus 2 ~i~vk~~~~~~~~~v~~~~tv~~lk~~i~~~~~~~~~~~~L~~~g~~ 48 (64)
T smart00213 2 ELTVKTLDGTITLEVKPSDTVSELKEKIAELTGIPVEQQRLIYKGKV 48 (64)
T ss_pred EEEEEECCceEEEEECCCCcHHHHHHHHHHHHCCCHHHEEEEECCEE
Confidence 45566555 35678899999999999999999999999999999998
No 54
>cd01812 BAG1_N Ubiquitin-like domain of BAG1. BAG1_N N-terminal ubiquitin-like (Ubl) domain of the BAG1 protein. This domain occurs together with the BAG domain and is closely related to the Ubl domain of a family of deubiquitinases that includes Rpn11, UBP6 (USP14), USP7 (HAUSP).
Probab=98.92 E-value=3.1e-10 Score=65.39 Aligned_cols=41 Identities=24% Similarity=0.376 Sum_probs=37.5
Q ss_pred CccccCCCCcceEEEECCEEeCCCCCCccceec-ccceeeee
Q 040204 1 IEDKEEILRDQQRFIFAGKRLEDGRTLVDYNIH-GSTLHSVR 41 (97)
Q Consensus 1 i~~~~gip~~~Q~L~~~g~~L~d~~tL~~y~I~-~sti~l~i 41 (97)
|++.+|+|++.|+|+|+|+.|.|+.+|++|+|. +++++++.
T Consensus 29 i~~~~gi~~~~q~L~~~g~~l~d~~~L~~~~i~~g~~l~v~~ 70 (71)
T cd01812 29 LAPVTGVEPRDQKLIFKGKERDDAETLDMSGVKDGSKVMLLE 70 (71)
T ss_pred HHHhhCCChHHeEEeeCCcccCccCcHHHcCCCCCCEEEEec
Confidence 456789999999999999999999999999999 99998763
No 55
>cd01815 BMSC_UbP_N Ubiquitin-like domain of BMSC-UbP. BMSC_UbP (bone marrow stromal cell-derived ubiquitin-like protein) has an N-terminal ubiquitin-like (UBQ) domain and a C-terminal ubiquitin-associated (UBA) domain, a domain architecture similar to those of the UBIN, Chap1, and ubiquilin proteins. This CD represents the N-terminal ubiquitin-like domain.
Probab=98.88 E-value=1.3e-09 Score=64.22 Aligned_cols=37 Identities=16% Similarity=0.121 Sum_probs=31.0
Q ss_pred eccchhHHHHHhhhhh--cCCC-CCceEEEECeEe--CCCcc
Q 040204 52 ESSDTIDNVKAKIQDK--KGTP-PDQQRQIFWFVF--GWGSL 88 (97)
Q Consensus 52 ~~~~TV~~lK~~I~~~--~gip-~~~q~Lif~G~~--~~~~~ 88 (97)
..++||.+||++|+++ +|++ +++|+|||+||+ |..+|
T Consensus 18 ~~~~TV~~LK~kI~~~~~egi~~~dqQrLIy~GKiL~D~~TL 59 (75)
T cd01815 18 PGGYQVSTLKQLIAAQLPDSLPDPELIDLIHCGRKLKDDQTL 59 (75)
T ss_pred CccCcHHHHHHHHHHhhccCCCChHHeEEEeCCcCCCCCCcH
Confidence 5589999999999999 5675 999999999999 44443
No 56
>cd01799 Hoil1_N Ubiquitin-like domain of HOIL1. HOIL1_N HOIL-1 (heme-oxidized IRP2 ubiquitin ligase-1) is an E3 ubiquitin-protein ligase that recognizes heme-oxidized IRP2 (iron regulatory protein2) and is thought to affect the turnover of oxidatively damaged proteins. Hoil-1 has an amino-terminal ubiquitin-like domain as well as an RBR signature consisting of two RING finger domains separated by an IBR/DRIL domain.
Probab=98.77 E-value=2.2e-09 Score=63.31 Aligned_cols=40 Identities=25% Similarity=0.250 Sum_probs=35.0
Q ss_pred CccccCCCCcceEEEECCEEeC-CCCCCccceec--ccceeeee
Q 040204 1 IEDKEEILRDQQRFIFAGKRLE-DGRTLVDYNIH--GSTLHSVR 41 (97)
Q Consensus 1 i~~~~gip~~~Q~L~~~g~~L~-d~~tL~~y~I~--~sti~l~i 41 (97)
|++++|||+++|+| |+|+.|. |+++|++||+. |+++++.+
T Consensus 32 I~~~~gip~~~QrL-~~G~~L~dD~~tL~~ygi~~~g~~~~l~~ 74 (75)
T cd01799 32 VFLDYGFPPAVQRW-VIGQRLARDQETLYSHGIRTNGDSAFLYI 74 (75)
T ss_pred HHHHHCcCHHHEEE-EcCCeeCCCcCCHHHcCCCCCCCEEEEEe
Confidence 45779999999999 9999985 77999999998 79998864
No 57
>cd01790 Herp_N Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain protein. Herp (Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain protein) , is an integral membrane protein that is induced by the endoplasmic reticulum (ER) stress response pathway and is involved in improving the balance of folding capacity and protein loads in the ER. Herp has an N-terminal ubiquitin-like domain that is involved in Herp degradation, but is not necessary for its enhancement of amyloid beta-protein generation.
Probab=98.75 E-value=2.6e-09 Score=63.65 Aligned_cols=35 Identities=34% Similarity=0.370 Sum_probs=32.3
Q ss_pred CCCcceEEEECCEEeCCCCCCccce--ec-ccceeeee
Q 040204 7 ILRDQQRFIFAGKRLEDGRTLVDYN--IH-GSTLHSVR 41 (97)
Q Consensus 7 ip~~~Q~L~~~g~~L~d~~tL~~y~--I~-~sti~l~i 41 (97)
.|+++|||+|+||.|+|+.||++|. +. +.+|||+.
T Consensus 41 ~~~~~QrLIy~GKiLkD~~tL~~~~~~~~~~~tiHLV~ 78 (79)
T cd01790 41 PLEQDQRLIYSGKLLPDHLKLRDVLRKQDEYHMVHLVC 78 (79)
T ss_pred CChhHeEEEEcCeeccchhhHHHHhhcccCCceEEEEe
Confidence 5579999999999999999999996 88 99999986
No 58
>cd01813 UBP_N UBP ubiquitin processing protease. The UBP (ubiquitin processing protease) domain (also referred to as USP which stands for "ubiquitin-specific protease") is present at in a large family of cysteine proteases that specifically cleave ubiquitin conjugates. This family includes Rpn11, UBP6 (USP14), USP7 (HAUSP). This domain is closely related to the amino-terminal ubiquitin-like domain of BAG1 (Bcl2-associated anthanogene1) protein and is found only in eukaryotes.
Probab=98.75 E-value=2.4e-09 Score=62.93 Aligned_cols=40 Identities=18% Similarity=0.341 Sum_probs=36.6
Q ss_pred CccccCCCCcceEEEE---CCEEeCCCCCCccceec-ccceeee
Q 040204 1 IEDKEEILRDQQRFIF---AGKRLEDGRTLVDYNIH-GSTLHSV 40 (97)
Q Consensus 1 i~~~~gip~~~Q~L~~---~g~~L~d~~tL~~y~I~-~sti~l~ 40 (97)
|++.+|+|+++|+|+| .|+.+.|+.+|++|+|. +++++|+
T Consensus 29 i~~~tgvp~~~QKLi~~~~~Gk~l~D~~~L~~~~i~~g~~i~lm 72 (74)
T cd01813 29 IKTLTGVLPERQKLLGLKVKGKPAEDDVKISALKLKPNTKIMMM 72 (74)
T ss_pred HHHHHCCCHHHEEEEeecccCCcCCCCcCHHHcCCCCCCEEEEE
Confidence 4567899999999996 89999999999999999 9999876
No 59
>cd01763 Sumo Small ubiquitin-related modifier (SUMO). Small ubiquitin-related modifier (SUMO) proteins are conjugated to numerous intracellular targets and serve to modulate protein interaction, localization, activity or stability. SUMO (also known as "Smt3" and "sentrin" in other organisms) is linked to several different pathways, including nucleocytoplasmic transport. Attachment of SUMO to targets proteins is stimulated by PIAS (Protein inhibitor of activated STATs) proteins which serve as E3-like ligases.
Probab=98.72 E-value=4.9e-08 Score=58.84 Aligned_cols=50 Identities=10% Similarity=0.098 Sum_probs=44.0
Q ss_pred ccceeeeeeeecc--eeeeeeccchhHHHHHhhhhhcCCCCCceEEEECeEe
Q 040204 34 GSTLHSVRRFRGG--MQIFVESSDTIDNVKAKIQDKKGTPPDQQRQIFWFVF 83 (97)
Q Consensus 34 ~sti~l~i~~~~g--~~i~v~~~~TV~~lK~~I~~~~gip~~~q~Lif~G~~ 83 (97)
...|.+.++...| ..+.|++++|+..||++++++.|+|+++|+|+|+|+.
T Consensus 9 ~~~i~I~v~~~~g~~~~~~v~~~~~l~~l~~~y~~~~gi~~~~~rf~f~G~~ 60 (87)
T cd01763 9 SEHINLKVKGQDGNEVFFKIKRSTPLKKLMEAYCQRQGLSMNSVRFLFDGQR 60 (87)
T ss_pred CCeEEEEEECCCCCEEEEEEcCCCHHHHHHHHHHHHhCCCccceEEEECCeE
Confidence 4567777777766 4577899999999999999999999999999999999
No 60
>cd01795 USP48_C USP ubiquitin-specific protease. The USP (ubiquitin-specific protease) family is one of at least seven deubiquitylating enzyme (DUB) families capable of deconjugating ubiquitin and ubiquitin-like adducts. While the USP's have a conserved catalytic core domain, they differ in their domain architectures. This subfamily, which includes USP31, and USP48, has a carboxy-terminal ubiquitin-like domain in addition to a DUSP (domain of ubiquitin-specific proteases) domain,
Probab=98.71 E-value=6.4e-09 Score=64.18 Aligned_cols=42 Identities=21% Similarity=0.124 Sum_probs=37.8
Q ss_pred CccccCCCCcceEEEECCEEeC-CCCCCccceec-ccceeeeee
Q 040204 1 IEDKEEILRDQQRFIFAGKRLE-DGRTLVDYNIH-GSTLHSVRR 42 (97)
Q Consensus 1 i~~~~gip~~~Q~L~~~g~~L~-d~~tL~~y~I~-~sti~l~i~ 42 (97)
|.++.++||.+|+|+|+|+.|+ |.+||++|||. +|++.+.++
T Consensus 34 ImQ~f~V~P~dQkL~~dG~~L~DDsrTLssyGv~sgSvl~Llid 77 (107)
T cd01795 34 IMHAFSVAPFDQNLSIDGKILSDDCATLGTLGVIPESVILLKAD 77 (107)
T ss_pred HHHHhcCCcccceeeecCceeccCCccHHhcCCCCCCEEEEEec
Confidence 4678899999999999999995 56999999999 999999885
No 61
>TIGR00601 rad23 UV excision repair protein Rad23. All proteins in this family for which functions are known are components of a multiprotein complex used for targeting nucleotide excision repair to specific parts of the genome. In humans, Rad23 complexes with the XPC protein. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.66 E-value=4.1e-08 Score=73.23 Aligned_cols=46 Identities=24% Similarity=0.306 Sum_probs=40.3
Q ss_pred eeeeeeecc--eeeeeeccchhHHHHHhhhhhcC---CCCCceEEEECeEe
Q 040204 38 HSVRRFRGG--MQIFVESSDTIDNVKAKIQDKKG---TPPDQQRQIFWFVF 83 (97)
Q Consensus 38 ~l~i~~~~g--~~i~v~~~~TV~~lK~~I~~~~g---ip~~~q~Lif~G~~ 83 (97)
.+.++...| +.|.|++++||.+||++|++..| +|+++|+|||+||.
T Consensus 2 kItVKtl~g~~~~IeV~~~~TV~dLK~kI~~~~g~~~ip~~~QkLIy~Gki 52 (378)
T TIGR00601 2 TLTFKTLQQQKFKIDMEPDETVKELKEKIEAEQGKDAYPVAQQKLIYSGKI 52 (378)
T ss_pred EEEEEeCCCCEEEEEeCCcChHHHHHHHHHHhhCCCCCChhHeEEEECCEE
Confidence 456666655 56788999999999999999998 99999999999998
No 62
>cd01795 USP48_C USP ubiquitin-specific protease. The USP (ubiquitin-specific protease) family is one of at least seven deubiquitylating enzyme (DUB) families capable of deconjugating ubiquitin and ubiquitin-like adducts. While the USP's have a conserved catalytic core domain, they differ in their domain architectures. This subfamily, which includes USP31, and USP48, has a carboxy-terminal ubiquitin-like domain in addition to a DUSP (domain of ubiquitin-specific proteases) domain,
Probab=98.59 E-value=6.5e-08 Score=59.75 Aligned_cols=39 Identities=18% Similarity=0.188 Sum_probs=36.2
Q ss_pred cceeeeeeccchhHHHHHhhhhhcCCCCCceEEEECeEe
Q 040204 45 GGMQIFVESSDTIDNVKAKIQDKKGTPPDQQRQIFWFVF 83 (97)
Q Consensus 45 ~g~~i~v~~~~TV~~lK~~I~~~~gip~~~q~Lif~G~~ 83 (97)
+...+.|++++||.+||.+|.++.++||++|+|+|.|+.
T Consensus 15 ~~~~L~V~~~~TVg~LK~lImQ~f~V~P~dQkL~~dG~~ 53 (107)
T cd01795 15 GEKALLVSANQTLKELKIQIMHAFSVAPFDQNLSIDGKI 53 (107)
T ss_pred CCceEEeCccccHHHHHHHHHHHhcCCcccceeeecCce
Confidence 346788999999999999999999999999999999995
No 63
>smart00213 UBQ Ubiquitin homologues. Ubiquitin-mediated proteolysis is involved in the regulated turnover of proteins required for controlling cell cycle progression
Probab=98.57 E-value=1.8e-08 Score=56.34 Aligned_cols=35 Identities=57% Similarity=0.844 Sum_probs=31.5
Q ss_pred CccccCCCCcceEEEECCEEeCCCCCCccceec-cc
Q 040204 1 IEDKEEILRDQQRFIFAGKRLEDGRTLVDYNIH-GS 35 (97)
Q Consensus 1 i~~~~gip~~~Q~L~~~g~~L~d~~tL~~y~I~-~s 35 (97)
|++.+|+|++.|+|+|+|+.|+|+.+|++|++. ++
T Consensus 29 i~~~~~~~~~~~~L~~~g~~L~d~~tL~~~~i~~~~ 64 (64)
T smart00213 29 IAELTGIPVEQQRLIYKGKVLEDDRTLADYNIQDGS 64 (64)
T ss_pred HHHHHCCCHHHEEEEECCEECCCCCCHHHcCCcCCC
Confidence 356789999999999999999999999999998 64
No 64
>KOG0010 consensus Ubiquitin-like protein [Posttranslational modification, protein turnover, chaperones; General function prediction only]
Probab=98.54 E-value=2.3e-08 Score=75.98 Aligned_cols=46 Identities=35% Similarity=0.481 Sum_probs=41.2
Q ss_pred CccccCCCCcceEEEECCEEeCCCCCCccceec-ccceeeeeeeecc
Q 040204 1 IEDKEEILRDQQRFIFAGKRLEDGRTLVDYNIH-GSTLHSVRRFRGG 46 (97)
Q Consensus 1 i~~~~gip~~~Q~L~~~g~~L~d~~tL~~y~I~-~sti~l~i~~~~g 46 (97)
|....++|+++++|+|+||.|+|+.||..|||+ |.||||+++....
T Consensus 44 I~~~f~a~~dqlvLIfaGrILKD~dTL~~~gI~Dg~TvHLVik~~~~ 90 (493)
T KOG0010|consen 44 IAQRFGAPPDQLVLIYAGRILKDDDTLKQYGIQDGHTVHLVIKSQPR 90 (493)
T ss_pred HHHhcCCChhHeeeeecCccccChhhHHHcCCCCCcEEEEEeccCCC
Confidence 345678999999999999999999999999999 9999999986643
No 65
>cd01769 UBL Ubiquitin-like domain of UBL. UBLs function by remodeling the surface of their target proteins, changing their target's half-life, enzymatic activity, protein-protein interactions, subcellular localization or other properties. At least 10 different ubiquitin-like modifications exist in mammals, and attachment of different ubls to a target leads to different biological consequences. Ubl-conjugation cascades are initiated by activating enzymes, which also coordinate the ubls with their downstream pathways.
Probab=98.45 E-value=6.8e-08 Score=54.62 Aligned_cols=40 Identities=55% Similarity=0.800 Sum_probs=36.3
Q ss_pred ccccCCCCcceEEEECCEEeCCCCCCccceec-ccceeeee
Q 040204 2 EDKEEILRDQQRFIFAGKRLEDGRTLVDYNIH-GSTLHSVR 41 (97)
Q Consensus 2 ~~~~gip~~~Q~L~~~g~~L~d~~tL~~y~I~-~sti~l~i 41 (97)
++..|+|++.|+|+|+|+.|+|+.+|++|++. ++++++..
T Consensus 28 ~~~~~~~~~~~~l~~~g~~l~d~~~l~~~~v~~~~~i~v~~ 68 (69)
T cd01769 28 AAKEGVPPEQQRLIYAGKILKDDKTLSDYGIQDGSTLHLVL 68 (69)
T ss_pred HHHHCcChHHEEEEECCcCCCCcCCHHHCCCCCCCEEEEEE
Confidence 45679999999999999999999999999999 99998764
No 66
>TIGR00601 rad23 UV excision repair protein Rad23. All proteins in this family for which functions are known are components of a multiprotein complex used for targeting nucleotide excision repair to specific parts of the genome. In humans, Rad23 complexes with the XPC protein. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.44 E-value=8e-08 Score=71.68 Aligned_cols=43 Identities=26% Similarity=0.380 Sum_probs=37.9
Q ss_pred ccccC---CCCcceEEEECCEEeCCCCCCccceec-ccceeeeeeee
Q 040204 2 EDKEE---ILRDQQRFIFAGKRLEDGRTLVDYNIH-GSTLHSVRRFR 44 (97)
Q Consensus 2 ~~~~g---ip~~~Q~L~~~g~~L~d~~tL~~y~I~-~sti~l~i~~~ 44 (97)
++..| +|+++|+|+|+||.|+|+++|++|+|+ +++|+++++..
T Consensus 31 ~~~~g~~~ip~~~QkLIy~GkiL~Dd~tL~dy~I~e~~~Ivvmv~k~ 77 (378)
T TIGR00601 31 EAEQGKDAYPVAQQKLIYSGKILSDDKTVREYKIKEKDFVVVMVSKP 77 (378)
T ss_pred HHhhCCCCCChhHeEEEECCEECCCCCcHHHcCCCCCCEEEEEeccC
Confidence 34556 999999999999999999999999999 99998887643
No 67
>KOG0001 consensus Ubiquitin and ubiquitin-like proteins [Posttranslational modification, protein turnover, chaperones; General function prediction only]
Probab=98.42 E-value=2.4e-07 Score=52.11 Aligned_cols=43 Identities=70% Similarity=0.981 Sum_probs=39.0
Q ss_pred ccccCCCCcceEEEECCEEeCCCCCCccceec-ccceeeeeeee
Q 040204 2 EDKEEILRDQQRFIFAGKRLEDGRTLVDYNIH-GSTLHSVRRFR 44 (97)
Q Consensus 2 ~~~~gip~~~Q~L~~~g~~L~d~~tL~~y~I~-~sti~l~i~~~ 44 (97)
+..+|+|+++|++.++|+.|+|+.++++|+|. ++++++..+..
T Consensus 30 ~~~~~~~~~~q~~~~~~~~l~d~~~l~~~~i~~~~~~~l~~~~~ 73 (75)
T KOG0001|consen 30 RDKEGIPVDQQRLIFGGKPLEDGRTLADYNIQEGSTLHLVLSLR 73 (75)
T ss_pred HhhcCCCCeeEEEEECCEECcCCCcHHHhCCCCCCEEEEEEecC
Confidence 45679999999999999999999999999999 99999887654
No 68
>cd01769 UBL Ubiquitin-like domain of UBL. UBLs function by remodeling the surface of their target proteins, changing their target's half-life, enzymatic activity, protein-protein interactions, subcellular localization or other properties. At least 10 different ubiquitin-like modifications exist in mammals, and attachment of different ubls to a target leads to different biological consequences. Ubl-conjugation cascades are initiated by activating enzymes, which also coordinate the ubls with their downstream pathways.
Probab=98.32 E-value=1.1e-06 Score=49.57 Aligned_cols=37 Identities=41% Similarity=0.619 Sum_probs=34.2
Q ss_pred eeeeeeccchhHHHHHhhhhhcCCCCCceEEEECeEe
Q 040204 47 MQIFVESSDTIDNVKAKIQDKKGTPPDQQRQIFWFVF 83 (97)
Q Consensus 47 ~~i~v~~~~TV~~lK~~I~~~~gip~~~q~Lif~G~~ 83 (97)
..+.+.++.||.++|.+|++..|+|++.|+|+|+|+.
T Consensus 10 ~~~~~~~~~ti~~lK~~i~~~~~~~~~~~~l~~~g~~ 46 (69)
T cd01769 10 FELEVSPDDTVAELKAKIAAKEGVPPEQQRLIYAGKI 46 (69)
T ss_pred EEEEECCCChHHHHHHHHHHHHCcChHHEEEEECCcC
Confidence 4566788999999999999999999999999999988
No 69
>KOG0010 consensus Ubiquitin-like protein [Posttranslational modification, protein turnover, chaperones; General function prediction only]
Probab=98.28 E-value=8.1e-07 Score=67.70 Aligned_cols=53 Identities=21% Similarity=0.244 Sum_probs=44.9
Q ss_pred ceeeeeeeecc-eeeeeeccchhHHHHHhhhhhcCCCCCceEEEECeEe--CCCcc
Q 040204 36 TLHSVRRFRGG-MQIFVESSDTIDNVKAKIQDKKGTPPDQQRQIFWFVF--GWGSL 88 (97)
Q Consensus 36 ti~l~i~~~~g-~~i~v~~~~TV~~lK~~I~~~~gip~~~q~Lif~G~~--~~~~~ 88 (97)
.+.|.++..+. ..+.|..+.||.++|++|....++|+++++|||+||. |.-+|
T Consensus 15 ~irV~Vkt~~dk~~~~V~~~ssV~qlKE~I~~~f~a~~dqlvLIfaGrILKD~dTL 70 (493)
T KOG0010|consen 15 LIRVTVKTPKDKYEVNVASDSSVLQLKELIAQRFGAPPDQLVLIYAGRILKDDDTL 70 (493)
T ss_pred eeEEEEecCCcceeEecccchHHHHHHHHHHHhcCCChhHeeeeecCccccChhhH
Confidence 46777777666 5678899999999999999999999999999999998 44443
No 70
>PF11976 Rad60-SLD: Ubiquitin-2 like Rad60 SUMO-like; InterPro: IPR022617 This entry includes small ubiquitin-related modifier (SUMO) proteins. SUMOs are small proteins that are covalently attached to lysines as post-translational modifications and are used to control multiple cellular process including signal transduction, nuclear transport and DNA replication and repair []. Unlike ubiquitin, they are not involved in protein degradation. This entry also contains the C-terminal Rad60 DNA repair protein SUMO-like domain.; PDB: 3RD2_A 2JXX_A 3RCZ_A 3GOE_A 3A4S_D 3A4R_B 2IO1_D 1U4A_A 2K1F_A 1WZ0_A ....
Probab=98.27 E-value=5.7e-07 Score=51.88 Aligned_cols=40 Identities=35% Similarity=0.529 Sum_probs=34.0
Q ss_pred ccccCCCC-cceEEEECCEEeCCCCCCccceec-ccceeeee
Q 040204 2 EDKEEILR-DQQRFIFAGKRLEDGRTLVDYNIH-GSTLHSVR 41 (97)
Q Consensus 2 ~~~~gip~-~~Q~L~~~g~~L~d~~tL~~y~I~-~sti~l~i 41 (97)
+++.|+|+ +..+|+|.|++|.++.|+++|++. +++|++++
T Consensus 31 ~~~~~i~~~~~~~l~fdG~~L~~~~T~~~~~ied~d~Idv~I 72 (72)
T PF11976_consen 31 CEKKGIPPEESIRLIFDGKRLDPNDTPEDLGIEDGDTIDVII 72 (72)
T ss_dssp HHHHTTTT-TTEEEEETTEEE-TTSCHHHHT-STTEEEEEE-
T ss_pred HHhhCCCccceEEEEECCEEcCCCCCHHHCCCCCCCEEEEEC
Confidence 35679999 999999999999999999999999 99999864
No 71
>KOG0011 consensus Nucleotide excision repair factor NEF2, RAD23 component [Replication, recombination and repair]
Probab=98.20 E-value=1.9e-06 Score=62.97 Aligned_cols=46 Identities=30% Similarity=0.357 Sum_probs=40.2
Q ss_pred eeeeeeecc--eeeeeeccchhHHHHHhhhhhcC--CCCCceEEEECeEe
Q 040204 38 HSVRRFRGG--MQIFVESSDTIDNVKAKIQDKKG--TPPDQQRQIFWFVF 83 (97)
Q Consensus 38 ~l~i~~~~g--~~i~v~~~~TV~~lK~~I~~~~g--ip~~~q~Lif~G~~ 83 (97)
.+.++...+ ++|.++|++||.++|.+|+...| +|+++|.|||+||.
T Consensus 2 ~lt~KtL~q~~F~iev~Pe~tV~evK~kIet~~g~dyP~~~QkLIy~Gki 51 (340)
T KOG0011|consen 2 KLTVKTLKQQTFTIEVKPEDTVVEVKKKIETEKGPDYPAEQQKLIYSGKI 51 (340)
T ss_pred eeEeeeccCceeEeecCcchhHHHHHHHHHhccCCCCchhhheeeeccee
Confidence 345555555 77889999999999999999998 99999999999998
No 72
>cd01789 Alp11_N Ubiquitin-like domain of Alp11 tubulin-folding cofactor B. Alp11, also known as tubulin-folding cofactor B, is one of at least three proteins required for the proper folding of tubulins prior to their incorporation into microtubules. These cofactors are necessary for the biogenesis of microtubules and for cell viability. Alp11 has three domains including an N-terminal ubiquitin-like domain (represented by this CD) which executes the essential function, a central coiled-coil domain necessary for maintenance of cellular alpha-tubulin levels, and a C-terminal CLIP-170 domain is required for efficient binding to alpha-tubulin.
Probab=97.99 E-value=3.5e-06 Score=50.48 Aligned_cols=41 Identities=24% Similarity=0.400 Sum_probs=33.9
Q ss_pred ccccCCCCcceEEE-ECCE-----Ee-CCCCCCccceec-ccceeeeee
Q 040204 2 EDKEEILRDQQRFI-FAGK-----RL-EDGRTLVDYNIH-GSTLHSVRR 42 (97)
Q Consensus 2 ~~~~gip~~~Q~L~-~~g~-----~L-~d~~tL~~y~I~-~sti~l~i~ 42 (97)
+...|+|++.|+|. |.|+ .| +|+++|++|++. |.+||++-.
T Consensus 33 ~~~~G~~~~~mrL~l~~~~~~~~~~l~~d~~~L~~y~~~dg~~IhVvD~ 81 (84)
T cd01789 33 ELVVGTPASSMRLQLFDGDDKLVSKLDDDDALLGSYPVDDGCRIHVIDV 81 (84)
T ss_pred HHHHCCCccceEEEEEcCCCCeEeecCCCccEeeeccCCCCCEEEEEeC
Confidence 34579999999995 7776 45 788999999999 999998753
No 73
>PF11976 Rad60-SLD: Ubiquitin-2 like Rad60 SUMO-like; InterPro: IPR022617 This entry includes small ubiquitin-related modifier (SUMO) proteins. SUMOs are small proteins that are covalently attached to lysines as post-translational modifications and are used to control multiple cellular process including signal transduction, nuclear transport and DNA replication and repair []. Unlike ubiquitin, they are not involved in protein degradation. This entry also contains the C-terminal Rad60 DNA repair protein SUMO-like domain.; PDB: 3RD2_A 2JXX_A 3RCZ_A 3GOE_A 3A4S_D 3A4R_B 2IO1_D 1U4A_A 2K1F_A 1WZ0_A ....
Probab=97.96 E-value=3.9e-05 Score=44.07 Aligned_cols=46 Identities=28% Similarity=0.359 Sum_probs=40.1
Q ss_pred eeeeeeecc--eeeeeeccchhHHHHHhhhhhcCCCC-CceEEEECeEe
Q 040204 38 HSVRRFRGG--MQIFVESSDTIDNVKAKIQDKKGTPP-DQQRQIFWFVF 83 (97)
Q Consensus 38 ~l~i~~~~g--~~i~v~~~~TV~~lK~~I~~~~gip~-~~q~Lif~G~~ 83 (97)
.+.++..+| ..+.|++++++..+++..+++.|+|+ ++.+|+|.|+.
T Consensus 2 ~i~v~~~~~~~~~~~v~~~~~~~~l~~~~~~~~~i~~~~~~~l~fdG~~ 50 (72)
T PF11976_consen 2 TIKVRSQDGKEIKFKVKPTTTVSKLIEKYCEKKGIPPEESIRLIFDGKR 50 (72)
T ss_dssp EEEEEETTSEEEEEEEETTSCCHHHHHHHHHHHTTTT-TTEEEEETTEE
T ss_pred EEEEEeCCCCEEEEEECCCCcHHHHHHHHHHhhCCCccceEEEEECCEE
Confidence 455666666 55777999999999999999999999 99999999998
No 74
>cd01789 Alp11_N Ubiquitin-like domain of Alp11 tubulin-folding cofactor B. Alp11, also known as tubulin-folding cofactor B, is one of at least three proteins required for the proper folding of tubulins prior to their incorporation into microtubules. These cofactors are necessary for the biogenesis of microtubules and for cell viability. Alp11 has three domains including an N-terminal ubiquitin-like domain (represented by this CD) which executes the essential function, a central coiled-coil domain necessary for maintenance of cellular alpha-tubulin levels, and a C-terminal CLIP-170 domain is required for efficient binding to alpha-tubulin.
Probab=97.84 E-value=4.7e-05 Score=45.55 Aligned_cols=35 Identities=26% Similarity=0.147 Sum_probs=31.4
Q ss_pred eeeeeccchhHHHHHhhhhhcCCCCCceEEE-ECeE
Q 040204 48 QIFVESSDTIDNVKAKIQDKKGTPPDQQRQI-FWFV 82 (97)
Q Consensus 48 ~i~v~~~~TV~~lK~~I~~~~gip~~~q~Li-f~G~ 82 (97)
+..+.++.||.+||++++...|+||+.|+|. |.|+
T Consensus 16 ekr~~~~~Tv~~lK~kl~~~~G~~~~~mrL~l~~~~ 51 (84)
T cd01789 16 EKKYSRGLTIAELKKKLELVVGTPASSMRLQLFDGD 51 (84)
T ss_pred eEecCCCCcHHHHHHHHHHHHCCCccceEEEEEcCC
Confidence 4456899999999999999999999999995 7887
No 75
>KOG0011 consensus Nucleotide excision repair factor NEF2, RAD23 component [Replication, recombination and repair]
Probab=97.80 E-value=1.1e-05 Score=58.93 Aligned_cols=42 Identities=21% Similarity=0.362 Sum_probs=36.4
Q ss_pred cccC--CCCcceEEEECCEEeCCCCCCccceec-ccceeeeeeee
Q 040204 3 DKEE--ILRDQQRFIFAGKRLEDGRTLVDYNIH-GSTLHSVRRFR 44 (97)
Q Consensus 3 ~~~g--ip~~~Q~L~~~g~~L~d~~tL~~y~I~-~sti~l~i~~~ 44 (97)
...| .|+++|+|+|+||.|.|+.++.+|++. ++.+.++++..
T Consensus 32 t~~g~dyP~~~QkLIy~GkiL~D~~tv~Eykv~E~~fiVvMlsK~ 76 (340)
T KOG0011|consen 32 TEKGPDYPAEQQKLIYSGKILKDETTVGEYKVKEKKFIVVMLSKD 76 (340)
T ss_pred hccCCCCchhhheeeecceeccCCcchhhhccccCceEEEEEecC
Confidence 3445 899999999999999999999999999 88877777654
No 76
>PF13881 Rad60-SLD_2: Ubiquitin-2 like Rad60 SUMO-like; PDB: 1SE9_A 1WGH_A 2GOW_A.
Probab=97.70 E-value=4.8e-05 Score=47.96 Aligned_cols=37 Identities=38% Similarity=0.587 Sum_probs=28.2
Q ss_pred CCcceEEEECCEEeCCCCCCccceec-cc------ceeeeeeee
Q 040204 8 LRDQQRFIFAGKRLEDGRTLVDYNIH-GS------TLHSVRRFR 44 (97)
Q Consensus 8 p~~~Q~L~~~g~~L~d~~tL~~y~I~-~s------ti~l~i~~~ 44 (97)
.++..||+|.|+.|+|+.||+++.+. +. ++||+++..
T Consensus 47 s~~~lRLI~~GriL~d~~tL~~~~~~~~~~~~~~~vmHlvvrp~ 90 (111)
T PF13881_consen 47 SPSDLRLIYAGRILEDNKTLSDCRLPSGETPGGPTVMHLVVRPN 90 (111)
T ss_dssp SGGGEEEEETTEEE-SSSBTGGGT--TTSETT--EEEEEEE-SS
T ss_pred ChhhEEEEeCCeecCCcCcHHHhCCCCCCCCCCCEEEEEEecCC
Confidence 46789999999999999999999988 54 678877654
No 77
>PF14560 Ubiquitin_2: Ubiquitin-like domain; PDB: 1WJN_A 2KJ6_A 2KJR_A 1V6E_A 1T0Y_A.
Probab=97.69 E-value=0.00015 Score=43.40 Aligned_cols=34 Identities=24% Similarity=0.348 Sum_probs=30.1
Q ss_pred eeeeeeccchhHHHHHhhhhhcCCCCCceEEEEC
Q 040204 47 MQIFVESSDTIDNVKAKIQDKKGTPPDQQRQIFW 80 (97)
Q Consensus 47 ~~i~v~~~~TV~~lK~~I~~~~gip~~~q~Lif~ 80 (97)
.+..+.++.||.+||++++...|+|++.|+|.+.
T Consensus 16 ~ekr~~~~~Tv~eLK~kl~~~~Gi~~~~m~L~l~ 49 (87)
T PF14560_consen 16 VEKRFPKSITVSELKQKLEKLTGIPPSDMRLQLK 49 (87)
T ss_dssp EEEEEETTSBHHHHHHHHHHHHTS-TTTEEEEEE
T ss_pred EEEEcCCCCCHHHHHHHHHHHhCCCcccEEEEEE
Confidence 3466799999999999999999999999999997
No 78
>KOG4248 consensus Ubiquitin-like protein, regulator of apoptosis [Posttranslational modification, protein turnover, chaperones]
Probab=97.65 E-value=2.2e-05 Score=64.35 Aligned_cols=46 Identities=30% Similarity=0.584 Sum_probs=41.5
Q ss_pred CccccCCCCcceEEEECCEEeCCCCCCccceecccceeeeeeeecc
Q 040204 1 IEDKEEILRDQQRFIFAGKRLEDGRTLVDYNIHGSTLHSVRRFRGG 46 (97)
Q Consensus 1 i~~~~gip~~~Q~L~~~g~~L~d~~tL~~y~I~~sti~l~i~~~~g 46 (97)
|.++.+|+.+.|||+|+|+.|.|++++.+|+|.|-+|||+-|.+.+
T Consensus 32 ~r~~~ni~s~~qr~i~~grvl~~~k~vq~~~vdgk~~hlverppp~ 77 (1143)
T KOG4248|consen 32 IRASVNIPSEKQRLIYQGRVLQDDKKVQEYNVDGKVIHLVERPPPQ 77 (1143)
T ss_pred HHHhcccccccceeeecceeeccchhhhhccCCCeEEEeeccCCCC
Confidence 4567899999999999999999999999999999999999886644
No 79
>PF11543 UN_NPL4: Nuclear pore localisation protein NPL4; InterPro: IPR024682 Npl4, along with Ufd1, forms the heterodimer adaptor complex UN, which is involved in the recruitment of p97, an AAA ATPase, for tasks involving the ubiquitin pathway. Npl4 has a N-terminal ubiquitin-like domain which has within its structure a beta-grasp fold with a helical insert []. This entry represents the ubiquitin-like domain.; PDB: 2PJH_A 1WF9_A.
Probab=97.54 E-value=0.00014 Score=43.30 Aligned_cols=44 Identities=27% Similarity=0.345 Sum_probs=29.3
Q ss_pred cceeeeeeeecc-eeeeeeccchhHHHHHhhhhhcCCCCCceEEE
Q 040204 35 STLHSVRRFRGG-MQIFVESSDTIDNVKAKIQDKKGTPPDQQRQI 78 (97)
Q Consensus 35 sti~l~i~~~~g-~~i~v~~~~TV~~lK~~I~~~~gip~~~q~Li 78 (97)
..+-+.++.+.| ..|.+++++|+.+||++|++..++|++.|.|.
T Consensus 3 ~~milRvrS~dG~~Rie~~~~~t~~~L~~kI~~~l~~~~~~~~L~ 47 (80)
T PF11543_consen 3 SSMILRVRSKDGMKRIEVSPSSTLSDLKEKISEQLSIPDSSQSLS 47 (80)
T ss_dssp ---EEEEE-SSEEEEEEE-TTSBHHHHHHHHHHHS---TTT---B
T ss_pred ccEEEEEECCCCCEEEEcCCcccHHHHHHHHHHHcCCCCcceEEE
Confidence 346677888888 55999999999999999999999999988774
No 80
>cd01788 ElonginB Ubiquitin-like domain of Elongin B. Elongin B is part of an E3 ubiquitin ligase complex called VEC that activates ubiquitylation by the E2 ubiquitin-conjugating enzyme Ubc5. VEC is composed of von Hippel-Lindau tumor suppressor protein (pVHL), elongin C, cullin 2, NEDD8, and Rbx1. ElonginB binds elonginC to form the elonginBC complex which is a positive regulator of RNA polymerase II elongation factor Elongin A. The BC complex then binds VHL (von Hippel-Lindau) tumour suppressor protein to form a VCB ternary complex. Elongin B has a ubiquitin-llike domain.
Probab=97.53 E-value=0.00015 Score=45.85 Aligned_cols=50 Identities=18% Similarity=0.080 Sum_probs=36.9
Q ss_pred eeeeeeecc-eeeeeeccchhHHHHHhhhhhcCCCCCceEEEECeEe---CCCcc
Q 040204 38 HSVRRFRGG-MQIFVESSDTIDNVKAKIQDKKGTPPDQQRQIFWFVF---GWGSL 88 (97)
Q Consensus 38 ~l~i~~~~g-~~i~v~~~~TV~~lK~~I~~~~gip~~~q~Lif~G~~---~~~~~ 88 (97)
+++++.... +-+..++++||.+||.+|+.-...||++|+|+ .+-+ |.++|
T Consensus 4 FlmIrR~KTTiF~dakes~tVlelK~~iegI~k~pp~dQrL~-kd~qvLeD~kTL 57 (119)
T cd01788 4 FLMIRRHKTTIFTDAKESTTVYELKRIVEGILKRPPEDQRLY-KDDQLLDDGKTL 57 (119)
T ss_pred EEEEEecceEEEeecCCcccHHHHHHHHHHHhcCChhHheee-cCceeecccccH
Confidence 444543332 33455999999999999999999999999999 4444 44555
No 81
>KOG0001 consensus Ubiquitin and ubiquitin-like proteins [Posttranslational modification, protein turnover, chaperones; General function prediction only]
Probab=97.49 E-value=0.00031 Score=39.04 Aligned_cols=37 Identities=54% Similarity=0.608 Sum_probs=34.6
Q ss_pred eeeeeeccchhHHHHHhhhhhcCCCCCceEEEECeEe
Q 040204 47 MQIFVESSDTIDNVKAKIQDKKGTPPDQQRQIFWFVF 83 (97)
Q Consensus 47 ~~i~v~~~~TV~~lK~~I~~~~gip~~~q~Lif~G~~ 83 (97)
..+.+.+.++|..+|.+|...+|+|+++|++.|+|+.
T Consensus 12 ~~~~~~~~~~i~~~k~~i~~~~~~~~~~q~~~~~~~~ 48 (75)
T KOG0001|consen 12 ITLEVSPSDTIEVVKAKIRDKEGIPVDQQRLIFGGKP 48 (75)
T ss_pred EEEEecCCCHHHHHHHHHHhhcCCCCeeEEEEECCEE
Confidence 4577899999999999999999999999999999988
No 82
>PLN02560 enoyl-CoA reductase
Probab=97.32 E-value=0.00038 Score=50.92 Aligned_cols=33 Identities=27% Similarity=0.347 Sum_probs=29.9
Q ss_pred eeeeeccchhHHHHHhhhhhcCC-CCCceEEEEC
Q 040204 48 QIFVESSDTIDNVKAKIQDKKGT-PPDQQRQIFW 80 (97)
Q Consensus 48 ~i~v~~~~TV~~lK~~I~~~~gi-p~~~q~Lif~ 80 (97)
++.++++.||++||.+|+++.++ ++++|||++.
T Consensus 17 ~lev~~~aTV~dLK~~Isk~~~~~~~~RqRL~~~ 50 (308)
T PLN02560 17 GLEVPDSATVADLKKAIHKRKKKYYPSRQRLTLP 50 (308)
T ss_pred eEEcCCCCcHHHHHHHHHHHcCCCChhheEEEEe
Confidence 46789999999999999999986 8999999994
No 83
>KOG0006 consensus E3 ubiquitin-protein ligase (Parkin protein) [Posttranslational modification, protein turnover, chaperones]
Probab=97.27 E-value=0.00033 Score=51.59 Aligned_cols=40 Identities=30% Similarity=0.404 Sum_probs=37.4
Q ss_pred ecceeeeeeccchhHHHHHhhhhhcCCCCCceEEEECeEe
Q 040204 44 RGGMQIFVESSDTIDNVKAKIQDKKGTPPDQQRQIFWFVF 83 (97)
Q Consensus 44 ~~g~~i~v~~~~TV~~lK~~I~~~~gip~~~q~Lif~G~~ 83 (97)
..++.|.|+.+.+|..||+.++.+.|+|+++.++||+||+
T Consensus 13 ~h~l~v~v~~~t~I~~lke~Vak~~gvp~D~L~viFaGKe 52 (446)
T KOG0006|consen 13 SHGLPVEVDSDTSIFQLKEVVAKRQGVPADQLRVIFAGKE 52 (446)
T ss_pred cCceeEEEecCCCHHHHHHHHHHhhCCChhheEEEEeccc
Confidence 3457899999999999999999999999999999999998
No 84
>PF13881 Rad60-SLD_2: Ubiquitin-2 like Rad60 SUMO-like; PDB: 1SE9_A 1WGH_A 2GOW_A.
Probab=97.25 E-value=0.0012 Score=41.67 Aligned_cols=54 Identities=19% Similarity=0.198 Sum_probs=38.1
Q ss_pred ceeeeeeeecce---eeeeeccchhHHHHHhhhhhc-----C--CCCCceEEEECeEe--CCCccc
Q 040204 36 TLHSVRRFRGGM---QIFVESSDTIDNVKAKIQDKK-----G--TPPDQQRQIFWFVF--GWGSLW 89 (97)
Q Consensus 36 ti~l~i~~~~g~---~i~v~~~~TV~~lK~~I~~~~-----g--ip~~~q~Lif~G~~--~~~~~~ 89 (97)
.|.|..+..+|. ....++++||.+||+.|-... . ..++..||||.||. |..+|=
T Consensus 2 ~i~lkf~l~~G~d~~~~~~~~~~TV~~lKe~i~~~WP~d~~~~p~s~~~lRLI~~GriL~d~~tL~ 67 (111)
T PF13881_consen 2 KIELKFRLADGKDIGPFRFDPSTTVADLKERIWAEWPEDWEERPKSPSDLRLIYAGRILEDNKTLS 67 (111)
T ss_dssp SEEEEEEETTS-EEEEEEE-TTSBHHHHHHHHHHSSSTTSSSTT-SGGGEEEEETTEEE-SSSBTG
T ss_pred eEEEEEEEeCCCcccccccCccChHHHHHHHHHHHCccccccCCCChhhEEEEeCCeecCCcCcHH
Confidence 456667776774 244588999999999997542 2 34889999999999 446653
No 85
>cd01811 OASL_repeat1 2'-5' oligoadenylate synthetase-like protein, repeat 1 of 2. OASL_repeat1 (2'-5' oligoadenylate synthetase-like protein) belongs to a family of interferon-induced 2'-5' oligoadenylate synthetases which are important for the antiviral activity of interferons. While each member of this famliy has a conserved N-terminal OAS catalytic domain, only OASL has two tandem ubiquitin-like repeats located at the C-terminus and this CD represents one of those repeats.
Probab=97.23 E-value=0.0002 Score=42.11 Aligned_cols=41 Identities=27% Similarity=0.498 Sum_probs=32.2
Q ss_pred cccCCCCcceEEEE---CCEE--eCCCCCCccceec-ccceeeeeeee
Q 040204 3 DKEEILRDQQRFIF---AGKR--LEDGRTLVDYNIH-GSTLHSVRRFR 44 (97)
Q Consensus 3 ~~~gip~~~Q~L~~---~g~~--L~d~~tL~~y~I~-~sti~l~i~~~ 44 (97)
...|++ ..|||.| +|++ |.+..+|++|||. +..|.++.+.+
T Consensus 32 ~~~~~~-g~qrLsfQepgg~rqlL~s~~sLA~yGiFs~~~i~lleT~p 78 (80)
T cd01811 32 RSRNCS-GLQRLSFQEPGGERQLLSSRKSLADYGIFSKTNICLLETFP 78 (80)
T ss_pred HhhCcc-cceEEEeecCCcccccccccccHhhhcceeccEEEEEecCC
Confidence 345666 5999999 4544 7999999999999 98888876643
No 86
>PF14560 Ubiquitin_2: Ubiquitin-like domain; PDB: 1WJN_A 2KJ6_A 2KJR_A 1V6E_A 1T0Y_A.
Probab=97.18 E-value=9.7e-05 Score=44.21 Aligned_cols=40 Identities=30% Similarity=0.459 Sum_probs=30.0
Q ss_pred ccccCCCCcceEEEEC----CEE---e-CCCCCCccceec-ccceeeee
Q 040204 2 EDKEEILRDQQRFIFA----GKR---L-EDGRTLVDYNIH-GSTLHSVR 41 (97)
Q Consensus 2 ~~~~gip~~~Q~L~~~----g~~---L-~d~~tL~~y~I~-~sti~l~i 41 (97)
+...|+|++.|+|.+. +.. + .|.++|.+||+. |.+||+.=
T Consensus 34 ~~~~Gi~~~~m~L~l~~~~~~~~~~~~~dd~~~L~~y~~~dg~~i~V~D 82 (87)
T PF14560_consen 34 EKLTGIPPSDMRLQLKSDKDDSKIEELDDDDATLGSYGIKDGMRIHVVD 82 (87)
T ss_dssp HHHHTS-TTTEEEEEE-TSSSSEEEESSGSSSBCCHHT-STTEEEEEEE
T ss_pred HHHhCCCcccEEEEEEecCCCccccccCCCccEeecCCCCCCCEEEEEe
Confidence 4568999999999984 222 3 578999999999 99998764
No 87
>cd01801 Tsc13_N Ubiquitin-like domain of Tsc13. Tsc13_N N-terminal domain of Tsc13. Tsc13 is an enoyl reductase involved in elongation of long chain fatty acids that localizes to the endoplasmic reticulum and is highly enriched in a novel structure marking nuclear-vacuolar junctions.
Probab=97.12 E-value=0.00032 Score=41.08 Aligned_cols=34 Identities=35% Similarity=0.489 Sum_probs=29.8
Q ss_pred CCCCcceEEE--ECCEEeCCCCCCccceec-ccceee
Q 040204 6 EILRDQQRFI--FAGKRLEDGRTLVDYNIH-GSTLHS 39 (97)
Q Consensus 6 gip~~~Q~L~--~~g~~L~d~~tL~~y~I~-~sti~l 39 (97)
.++++.|+|. +.|+.|.|+.+|.+||+. ++++++
T Consensus 38 ~~~~~Rqrl~~~~~g~~L~d~~tL~~~gv~~g~~lyv 74 (77)
T cd01801 38 QLTVNRQSLRLEPKGKSLKDDDTLVDLGVGAGATLYV 74 (77)
T ss_pred CCCcceeEEEeCCCCcccCCcccHhhcCCCCCCEEEE
Confidence 4688999996 689999999999999999 998765
No 88
>cd00196 UBQ Ubiquitin-like proteins. Ubiquitin homologs; Includes ubiquitin and ubiquitin-like proteins. Ubiquitin-mediated proteolysis is part of the regulated turnover of proteins required for controlling cell cycle progression. Other family members are protein modifiers that perform a wide range of functions. Ubiquitination usually results in a covalent bond between the C-terminus of ubiquitin and the epsilon-amino group of a substrate lysine. The three-step mechanism requires an activating enzyme (E1) that forms a thiol ester with the C-terminal carboxy group, a conjugating enzyme (E2) that transiently carries the activated ubiquitin molecule as a thiol ester, and a ligase (E3) that transfers the activated ubiquitin from the E2 to the substrate lysine residue. In poly-ubiquitination, ubiquitin itself is the substrate.
Probab=97.10 E-value=0.0011 Score=34.78 Aligned_cols=42 Identities=33% Similarity=0.442 Sum_probs=35.5
Q ss_pred eeeeeeccchhHHHHHhhhhhcCCCCCceEEEECeEeCCCcc
Q 040204 47 MQIFVESSDTIDNVKAKIQDKKGTPPDQQRQIFWFVFGWGSL 88 (97)
Q Consensus 47 ~~i~v~~~~TV~~lK~~I~~~~gip~~~q~Lif~G~~~~~~~ 88 (97)
..+.+.++.|++++|.+|.++.|++++.|.|++.|.......
T Consensus 10 ~~~~~~~~~tv~~l~~~i~~~~~~~~~~~~l~~~~~~~~~~~ 51 (69)
T cd00196 10 VELLVPSGTTVADLKEKLAKKLGLPPEQQRLLVNGKILPDSL 51 (69)
T ss_pred EEEEcCCCCcHHHHHHHHHHHHCcChHHeEEEECCeECCCCC
Confidence 445567899999999999999999999999999998844333
No 89
>cd01788 ElonginB Ubiquitin-like domain of Elongin B. Elongin B is part of an E3 ubiquitin ligase complex called VEC that activates ubiquitylation by the E2 ubiquitin-conjugating enzyme Ubc5. VEC is composed of von Hippel-Lindau tumor suppressor protein (pVHL), elongin C, cullin 2, NEDD8, and Rbx1. ElonginB binds elonginC to form the elonginBC complex which is a positive regulator of RNA polymerase II elongation factor Elongin A. The BC complex then binds VHL (von Hippel-Lindau) tumour suppressor protein to form a VCB ternary complex. Elongin B has a ubiquitin-llike domain.
Probab=97.10 E-value=0.00034 Score=44.30 Aligned_cols=59 Identities=19% Similarity=0.228 Sum_probs=42.7
Q ss_pred CCCCcceEEEECCEEeCCCCCCcccee-------c-ccceeeeeeeecc-e-eeeeeccchhHHHHHhh
Q 040204 6 EILRDQQRFIFAGKRLEDGRTLVDYNI-------H-GSTLHSVRRFRGG-M-QIFVESSDTIDNVKAKI 64 (97)
Q Consensus 6 gip~~~Q~L~~~g~~L~d~~tL~~y~I-------~-~sti~l~i~~~~g-~-~i~v~~~~TV~~lK~~I 64 (97)
..||++|+|+-.+..|+|++||++||+ + .+++=+..+...| + .+.+.|..+=-+|=.-+
T Consensus 36 k~pp~dQrL~kd~qvLeD~kTL~d~g~t~~~akaq~pA~vgLa~r~~d~~fE~l~I~p~S~pp~lPdvm 104 (119)
T cd01788 36 KRPPEDQRLYKDDQLLDDGKTLGDCGFTSQTARPQAPATVGLAFRSSDDTFEPLRIEPFSSPPELPDVM 104 (119)
T ss_pred cCChhHheeecCceeecccccHHHcCccccccccCCCCeEEEEEecCCCCccceeeeeCCCCCCchhhh
Confidence 469999999977778999999999999 6 7788888876544 3 36665554444443333
No 90
>PF10302 DUF2407: DUF2407 ubiquitin-like domain; InterPro: IPR019413 This entry represents a family of proteins of unknown function found in fungi. They contain a characteristic GFDRL sequence motif.
Probab=96.96 E-value=0.0019 Score=39.82 Aligned_cols=45 Identities=16% Similarity=0.212 Sum_probs=34.7
Q ss_pred eeeeeecc---eeeeee--ccchhHHHHHhhhhhc--CCCCCceEEEECeEe
Q 040204 39 SVRRFRGG---MQIFVE--SSDTIDNVKAKIQDKK--GTPPDQQRQIFWFVF 83 (97)
Q Consensus 39 l~i~~~~g---~~i~v~--~~~TV~~lK~~I~~~~--gip~~~q~Lif~G~~ 83 (97)
++++...+ ..+.+. .+.||..||.+|++.- ...-..+||||+||.
T Consensus 3 l~IRFs~sipDl~L~I~~~~~~Tv~~LK~lIR~~~p~~~s~~rLRlI~~Gr~ 54 (97)
T PF10302_consen 3 LTIRFSDSIPDLPLDIPSPNTTTVAWLKQLIRERLPPEPSRRRLRLIYAGRL 54 (97)
T ss_pred EEEEECCCCCCceeecCCCCcccHHHHHHHHHhhcCCCCccccEEeeecCcc
Confidence 45555544 345554 7899999999999886 367789999999999
No 91
>KOG4248 consensus Ubiquitin-like protein, regulator of apoptosis [Posttranslational modification, protein turnover, chaperones]
Probab=96.88 E-value=0.0014 Score=54.30 Aligned_cols=37 Identities=22% Similarity=0.300 Sum_probs=34.3
Q ss_pred eeeeeeccchhHHHHHhhhhhcCCCCCceEEEECeEe
Q 040204 47 MQIFVESSDTIDNVKAKIQDKKGTPPDQQRQIFWFVF 83 (97)
Q Consensus 47 ~~i~v~~~~TV~~lK~~I~~~~gip~~~q~Lif~G~~ 83 (97)
-++.|...+||.++|..|.++.+|+.+.|||||+||.
T Consensus 15 ~t~~ig~q~ti~~~~d~~r~~~ni~s~~qr~i~~grv 51 (1143)
T KOG4248|consen 15 RTFIIGAQMTIKEFKDHIRASVNIPSEKQRLIYQGRV 51 (1143)
T ss_pred eEEEechHHHHHHHHHHHHHhcccccccceeeeccee
Confidence 3466788999999999999999999999999999998
No 92
>cd01811 OASL_repeat1 2'-5' oligoadenylate synthetase-like protein, repeat 1 of 2. OASL_repeat1 (2'-5' oligoadenylate synthetase-like protein) belongs to a family of interferon-induced 2'-5' oligoadenylate synthetases which are important for the antiviral activity of interferons. While each member of this famliy has a conserved N-terminal OAS catalytic domain, only OASL has two tandem ubiquitin-like repeats located at the C-terminus and this CD represents one of those repeats.
Probab=96.85 E-value=0.0034 Score=36.95 Aligned_cols=44 Identities=20% Similarity=0.190 Sum_probs=36.3
Q ss_pred eeeeeeeecc--eeeeeeccchhHHHHHhhhhhcCCCCCceEEEECe
Q 040204 37 LHSVRRFRGG--MQIFVESSDTIDNVKAKIQDKKGTPPDQQRQIFWF 81 (97)
Q Consensus 37 i~l~i~~~~g--~~i~v~~~~TV~~lK~~I~~~~gip~~~q~Lif~G 81 (97)
|++.+...+. ..+.|+|..+|..+|++|+...|++- +|||.|+-
T Consensus 1 iqVtV~q~g~~dl~l~vnPy~pI~k~K~kI~~~~~~~g-~qrLsfQe 46 (80)
T cd01811 1 IQVTVEQTGYSDWILRVNPYSPIRKIKEKIRRSRNCSG-LQRLSFQE 46 (80)
T ss_pred CEEEeeecCCCceEEEeCCcchHHHHHHHHHHhhCccc-ceEEEeec
Confidence 3455666665 45778999999999999999999988 99999963
No 93
>cd00196 UBQ Ubiquitin-like proteins. Ubiquitin homologs; Includes ubiquitin and ubiquitin-like proteins. Ubiquitin-mediated proteolysis is part of the regulated turnover of proteins required for controlling cell cycle progression. Other family members are protein modifiers that perform a wide range of functions. Ubiquitination usually results in a covalent bond between the C-terminus of ubiquitin and the epsilon-amino group of a substrate lysine. The three-step mechanism requires an activating enzyme (E1) that forms a thiol ester with the C-terminal carboxy group, a conjugating enzyme (E2) that transiently carries the activated ubiquitin molecule as a thiol ester, and a ligase (E3) that transfers the activated ubiquitin from the E2 to the substrate lysine residue. In poly-ubiquitination, ubiquitin itself is the substrate.
Probab=96.58 E-value=0.0013 Score=34.52 Aligned_cols=40 Identities=38% Similarity=0.516 Sum_probs=34.4
Q ss_pred ccccCCCCcceEEEECCEEeCCCCCCccceec-ccceeeee
Q 040204 2 EDKEEILRDQQRFIFAGKRLEDGRTLVDYNIH-GSTLHSVR 41 (97)
Q Consensus 2 ~~~~gip~~~Q~L~~~g~~L~d~~tL~~y~I~-~sti~l~i 41 (97)
.++.|++++.+.|+++|..+.+...+.+|++. ++++++..
T Consensus 28 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 68 (69)
T cd00196 28 AKKLGLPPEQQRLLVNGKILPDSLTLEDYGLQDGDELVLVP 68 (69)
T ss_pred HHHHCcChHHeEEEECCeECCCCCcHHHcCCCCCCEEEEEe
Confidence 34567899999999999999999888899999 99888764
No 94
>PLN02560 enoyl-CoA reductase
Probab=96.40 E-value=0.0017 Score=47.54 Aligned_cols=42 Identities=29% Similarity=0.518 Sum_probs=32.3
Q ss_pred ccccCC-CCcceEEEEC---CE----EeCCCCCCccceec-ccceeeeeeeec
Q 040204 2 EDKEEI-LRDQQRFIFA---GK----RLEDGRTLVDYNIH-GSTLHSVRRFRG 45 (97)
Q Consensus 2 ~~~~gi-p~~~Q~L~~~---g~----~L~d~~tL~~y~I~-~sti~l~i~~~~ 45 (97)
+++.++ ++++|||.+. |+ .|+|+++|++||+. +++++ ++..|
T Consensus 34 sk~~~~~~~~RqRL~~~~~~gk~~g~~L~d~ktL~d~gv~~gstLy--~kDLG 84 (308)
T PLN02560 34 HKRKKKYYPSRQRLTLPLPPGKTRPTVLDDSKSLKDYGLGDGGTVV--FKDLG 84 (308)
T ss_pred HHHcCCCChhheEEEEecCCCCcCccccCCCCCHHhcCCCCCceEE--EEeCC
Confidence 456676 8999999983 43 78999999999999 88754 44444
No 95
>KOG0006 consensus E3 ubiquitin-protein ligase (Parkin protein) [Posttranslational modification, protein turnover, chaperones]
Probab=96.22 E-value=0.0018 Score=47.84 Aligned_cols=42 Identities=31% Similarity=0.470 Sum_probs=36.9
Q ss_pred ccccCCCCcceEEEECCEEeCCCCCCccceec-ccceeee-eee
Q 040204 2 EDKEEILRDQQRFIFAGKRLEDGRTLVDYNIH-GSTLHSV-RRF 43 (97)
Q Consensus 2 ~~~~gip~~~Q~L~~~g~~L~d~~tL~~y~I~-~sti~l~-i~~ 43 (97)
+...|+|+++.+++|+||.|+|+.++..+.+. .+.+|++ .|+
T Consensus 34 ak~~gvp~D~L~viFaGKeLs~~ttv~~cDL~qqs~~hi~~lRP 77 (446)
T KOG0006|consen 34 AKRQGVPADQLRVIFAGKELSNDTTVQNCDLSQQSATHIMLLRP 77 (446)
T ss_pred HHhhCCChhheEEEEeccccccCceeecccccccchhhhhccCc
Confidence 56789999999999999999999999999988 8888877 444
No 96
>KOG1769 consensus Ubiquitin-like proteins [Posttranslational modification, protein turnover, chaperones]
Probab=95.81 E-value=0.011 Score=36.56 Aligned_cols=45 Identities=24% Similarity=0.599 Sum_probs=41.0
Q ss_pred cccCCCCcceEEEECCEEeCCCCCCccceec-ccceeeeeeeecce
Q 040204 3 DKEEILRDQQRFIFAGKRLEDGRTLVDYNIH-GSTLHSVRRFRGGM 47 (97)
Q Consensus 3 ~~~gip~~~Q~L~~~g~~L~d~~tL~~y~I~-~sti~l~i~~~~g~ 47 (97)
+..|++.+..|++|+|+++.+.+|-++.+.. ++.|.++....+|.
T Consensus 52 ~r~Gl~~~s~RFlFdG~rI~~~~TP~~L~mEd~D~Iev~~~q~gG~ 97 (99)
T KOG1769|consen 52 ERQGLSMNSLRFLFDGQRIRETHTPADLEMEDGDEIEVVQEQTGGF 97 (99)
T ss_pred HHcCCccceEEEEECCcCcCCCCChhhhCCcCCcEEEEEeecccCC
Confidence 4679999999999999999999999999999 99999998877764
No 97
>KOG1872 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones]
Probab=95.79 E-value=0.015 Score=44.59 Aligned_cols=45 Identities=18% Similarity=0.327 Sum_probs=37.5
Q ss_pred eeeeeecc-eeee-eeccchhHHHHHhhhhhcCCCCCceEEEECeEe
Q 040204 39 SVRRFRGG-MQIF-VESSDTIDNVKAKIQDKKGTPPDQQRQIFWFVF 83 (97)
Q Consensus 39 l~i~~~~g-~~i~-v~~~~TV~~lK~~I~~~~gip~~~q~Lif~G~~ 83 (97)
+.++..+. ..+. ++.++|+..+|+++...+|+||+.|++++.|..
T Consensus 6 v~VKW~gk~y~v~~l~~d~t~~vlKaqlf~LTgV~PeRQKv~vKGg~ 52 (473)
T KOG1872|consen 6 VIVKWGGKKYPVETLSTDETPSVLKAQLFALTGVPPERQKVMVKGGL 52 (473)
T ss_pred EeeeecCccccceeccCCCchHHHHHHHHHhcCCCccceeEEEeccc
Confidence 44554444 3344 688999999999999999999999999999998
No 98
>cd01801 Tsc13_N Ubiquitin-like domain of Tsc13. Tsc13_N N-terminal domain of Tsc13. Tsc13 is an enoyl reductase involved in elongation of long chain fatty acids that localizes to the endoplasmic reticulum and is highly enriched in a novel structure marking nuclear-vacuolar junctions.
Probab=94.97 E-value=0.029 Score=32.68 Aligned_cols=32 Identities=16% Similarity=-0.031 Sum_probs=26.6
Q ss_pred eccchhHHHHHhhhhhcC-CCCCceEEE--ECeEe
Q 040204 52 ESSDTIDNVKAKIQDKKG-TPPDQQRQI--FWFVF 83 (97)
Q Consensus 52 ~~~~TV~~lK~~I~~~~g-ip~~~q~Li--f~G~~ 83 (97)
.++.||.+||..|.+..+ +++++|||. +.|+.
T Consensus 20 ~~~aTV~dlk~~i~~~~~~~~~~Rqrl~~~~~g~~ 54 (77)
T cd01801 20 SGDATIADLKKLIAKSSPQLTVNRQSLRLEPKGKS 54 (77)
T ss_pred CCCccHHHHHHHHHHHcCCCCcceeEEEeCCCCcc
Confidence 578899999999998865 689999996 66654
No 99
>KOG4495 consensus RNA polymerase II transcription elongation factor Elongin/SIII, subunit elongin B [Transcription]
Probab=94.95 E-value=0.044 Score=33.83 Aligned_cols=36 Identities=19% Similarity=0.129 Sum_probs=29.8
Q ss_pred eeeeeeccchhHHHHHhhhhhcCCCCCceEEEECeE
Q 040204 47 MQIFVESSDTIDNVKAKIQDKKGTPPDQQRQIFWFV 82 (97)
Q Consensus 47 ~~i~v~~~~TV~~lK~~I~~~~gip~~~q~Lif~G~ 82 (97)
+-+.-+++.||.++|.+++.-..=|++.|+|.--.-
T Consensus 14 if~da~es~tV~elK~~l~gi~~~Pvn~qrL~kmd~ 49 (110)
T KOG4495|consen 14 IFTDAKESSTVFELKRKLEGILKRPVNEQRLYKMDT 49 (110)
T ss_pred EEeecCccccHHHHHHHHHHHHhCCCcchheeecCH
Confidence 334448999999999999999999999999987333
No 100
>KOG1872 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones]
Probab=93.80 E-value=0.091 Score=40.49 Aligned_cols=44 Identities=16% Similarity=0.196 Sum_probs=38.8
Q ss_pred cccCCCCcceEEEECCEEeCCCCCCccceec-ccceeeeeeeecc
Q 040204 3 DKEEILRDQQRFIFAGKRLEDGRTLVDYNIH-GSTLHSVRRFRGG 46 (97)
Q Consensus 3 ~~~gip~~~Q~L~~~g~~L~d~~tL~~y~I~-~sti~l~i~~~~g 46 (97)
..+|+||+.|++...|..+.|+-......|+ |.+++|+-+...+
T Consensus 35 ~LTgV~PeRQKv~vKGg~a~dd~~~~al~iKpn~~lmMmGt~e~~ 79 (473)
T KOG1872|consen 35 ALTGVPPERQKVMVKGGLAKDDVDWGALQIKPNETLMMMGTAEAG 79 (473)
T ss_pred HhcCCCccceeEEEecccccccccccccccCCCCEEEeecccccc
Confidence 4589999999999999999999899999999 9999988765543
No 101
>PF11543 UN_NPL4: Nuclear pore localisation protein NPL4; InterPro: IPR024682 Npl4, along with Ufd1, forms the heterodimer adaptor complex UN, which is involved in the recruitment of p97, an AAA ATPase, for tasks involving the ubiquitin pathway. Npl4 has a N-terminal ubiquitin-like domain which has within its structure a beta-grasp fold with a helical insert []. This entry represents the ubiquitin-like domain.; PDB: 2PJH_A 1WF9_A.
Probab=92.01 E-value=0.022 Score=33.74 Aligned_cols=39 Identities=21% Similarity=0.256 Sum_probs=18.3
Q ss_pred ccccCCCCcceEEEE---CCEEe--CCCCCCccceec-ccceeee
Q 040204 2 EDKEEILRDQQRFIF---AGKRL--EDGRTLVDYNIH-GSTLHSV 40 (97)
Q Consensus 2 ~~~~gip~~~Q~L~~---~g~~L--~d~~tL~~y~I~-~sti~l~ 40 (97)
++..++|.+.|.|+. +...+ +++++|+++||+ |+-+++.
T Consensus 34 ~~~l~~~~~~~~L~~~~~~~~~l~s~~~~tl~~lglkHGdmlyL~ 78 (80)
T PF11543_consen 34 SEQLSIPDSSQSLSKDRNNKEELKSSDSKTLSSLGLKHGDMLYLK 78 (80)
T ss_dssp HHHS---TTT---BSSGGGGGCSSS-TT-CCCCT---TT-EEE--
T ss_pred HHHcCCCCcceEEEecCCCCcccccCCcCCHHHcCCCCccEEEEe
Confidence 456788988998875 22345 578999999999 9998764
No 102
>KOG3493 consensus Ubiquitin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=91.28 E-value=0.074 Score=30.55 Aligned_cols=31 Identities=26% Similarity=0.446 Sum_probs=25.4
Q ss_pred eeeeeeccchhHHHHHhhhhhcCCCCCceEE
Q 040204 47 MQIFVESSDTIDNVKAKIQDKKGTPPDQQRQ 77 (97)
Q Consensus 47 ~~i~v~~~~TV~~lK~~I~~~~gip~~~q~L 77 (97)
..|...++|||+++|..|..++|..++.-+|
T Consensus 14 VRvKCn~dDtiGD~KKliaaQtGT~~~kivl 44 (73)
T KOG3493|consen 14 VRVKCNTDDTIGDLKKLIAAQTGTRPEKIVL 44 (73)
T ss_pred EEEEeCCcccccCHHHHHHHhhCCChhHhHH
Confidence 3455589999999999999999988876544
No 103
>PF08817 YukD: WXG100 protein secretion system (Wss), protein YukD; InterPro: IPR014921 YukD is a bacterial protein that adopts a ubiquitin-like fold []. Ubiquitin covalently binds to protein and flags them for protein degradation, however conjugation assays have indicated that YukD lacks the capacity for covalent bond formation with other proteins []. ; PDB: 2BPS_B.
Probab=91.28 E-value=0.13 Score=30.10 Aligned_cols=28 Identities=25% Similarity=0.369 Sum_probs=20.7
Q ss_pred eEEE-ECCEEeCCCCCCccceec-ccceee
Q 040204 12 QRFI-FAGKRLEDGRTLVDYNIH-GSTLHS 39 (97)
Q Consensus 12 Q~L~-~~g~~L~d~~tL~~y~I~-~sti~l 39 (97)
-+|. -+|.+|+++++|++++|. |+.+.+
T Consensus 49 ~~L~~~~g~~L~~~~tL~~~gV~dGd~L~L 78 (79)
T PF08817_consen 49 WVLARAGGRPLDPDQTLADAGVRDGDVLVL 78 (79)
T ss_dssp EEEG-GGTEEEETTSBCGGGT--TT-EEEE
T ss_pred EEEEecCCcccCCcCcHhHcCCCCCCEEEe
Confidence 3444 489999999999999999 998875
No 104
>KOG4250 consensus TANK binding protein kinase TBK1 [Signal transduction mechanisms]
Probab=89.80 E-value=0.44 Score=38.65 Aligned_cols=50 Identities=16% Similarity=0.294 Sum_probs=38.8
Q ss_pred ccceeeeeeeecc-eeeeeeccchhHHHHHhhhhhcCCCCCceEEEECeEe
Q 040204 34 GSTLHSVRRFRGG-MQIFVESSDTIDNVKAKIQDKKGTPPDQQRQIFWFVF 83 (97)
Q Consensus 34 ~sti~l~i~~~~g-~~i~v~~~~TV~~lK~~I~~~~gip~~~q~Lif~G~~ 83 (97)
...+|++...... ..+.+.++.|...+++.|...+|+|...|.|.|.|.-
T Consensus 313 ~~vvhiFs~~~~~~~~~~~~~~ntl~~~~~~I~~~Tgipe~~qeLL~e~~~ 363 (732)
T KOG4250|consen 313 LKVVHIFSMVQATSHEYYVHADNTLHSLIERISKQTGIPEGKQELLFEGGL 363 (732)
T ss_pred hheeEEEeeccceEEEEecChhhhHHHHHHHHHHhhCCCCccceeeeecCc
Confidence 3445544432222 4567799999999999999999999999999999875
No 105
>cd06406 PB1_P67 A PB1 domain is present in p67 proteins which forms a signaling complex with p40, a crucial step for activation of NADPH oxidase during phagocytosis. PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes . A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants. The p67 proteins contain
Probab=89.75 E-value=1.5 Score=26.14 Aligned_cols=38 Identities=16% Similarity=0.087 Sum_probs=34.0
Q ss_pred ceeeeeeccchhHHHHHhhhhhcCCCCCceEEEECeEe
Q 040204 46 GMQIFVESSDTIDNVKAKIQDKKGTPPDQQRQIFWFVF 83 (97)
Q Consensus 46 g~~i~v~~~~TV~~lK~~I~~~~gip~~~q~Lif~G~~ 83 (97)
-+-|.|.+.-+...|.++|.++-++|++...|.|....
T Consensus 12 tIaIrvp~~~~y~~L~~ki~~kLkl~~e~i~LsYkde~ 49 (80)
T cd06406 12 TVAIQVARGLSYATLLQKISSKLELPAEHITLSYKSEA 49 (80)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHhCCCchhcEEEeccCC
Confidence 45567788999999999999999999999999998876
No 106
>smart00455 RBD Raf-like Ras-binding domain.
Probab=89.61 E-value=0.8 Score=26.34 Aligned_cols=37 Identities=19% Similarity=0.109 Sum_probs=32.5
Q ss_pred eeeeeeccchhHHHHHhhhhhcCCCCCceEEEECeEe
Q 040204 47 MQIFVESSDTIDNVKAKIQDKKGTPPDQQRQIFWFVF 83 (97)
Q Consensus 47 ~~i~v~~~~TV~~lK~~I~~~~gip~~~q~Lif~G~~ 83 (97)
..+.++|..|+.++=+++.++.|+.++...+...|..
T Consensus 12 ~~V~vrpg~tl~e~L~~~~~kr~l~~~~~~v~~~g~~ 48 (70)
T smart00455 12 TVVKVRPGKTVRDALAKALKKRGLNPECCVVRLRGEK 48 (70)
T ss_pred EEEEECCCCCHHHHHHHHHHHcCCCHHHEEEEEcCCC
Confidence 4577799999999999999999999999998886643
No 107
>KOG0013 consensus Uncharacterized conserved protein [Function unknown]
Probab=89.37 E-value=0.25 Score=34.56 Aligned_cols=40 Identities=25% Similarity=0.267 Sum_probs=34.0
Q ss_pred ccccCCCCcceEEEECCEEeCCCCCCccceec-ccceeeee
Q 040204 2 EDKEEILRDQQRFIFAGKRLEDGRTLVDYNIH-GSTLHSVR 41 (97)
Q Consensus 2 ~~~~gip~~~Q~L~~~g~~L~d~~tL~~y~I~-~sti~l~i 41 (97)
..++|+.+..|+.+|+|+.+-|...|.+++|+ ++...+-+
T Consensus 177 ~Aaeg~D~~sQrif~Sg~~l~dkt~LeEc~iekg~rYvlqv 217 (231)
T KOG0013|consen 177 RAAEGVDPLSQRIFFSGGVLVDKTDLEECKIEKGQRYVLQV 217 (231)
T ss_pred HHhhccchhhheeeccCCceeccccceeeeecCCCEEEEEE
Confidence 35688888999999999999999999999999 87655433
No 108
>PF11470 TUG-UBL1: GLUT4 regulating protein TUG; InterPro: IPR021569 TUG is a GLUT4 regulating protein and functions to retain membrane vesicles containing GLUT4 intracellularly. TUG releases the GLUT4 containing vesicles to the cellular exocytic machinery in response to insulin stimulation which allows translocation to the plasma membrane []. TUG has an N-terminal ubiquitin-like domain (UBL1) which in similar proteins appears to participate in protein-protein interactions []. The region does have a area of negative electrostatic potential and increased backbone motility which leads to suggestions of a potential protein-protein interaction site []. ; PDB: 2AL3_A.
Probab=89.31 E-value=1 Score=25.68 Aligned_cols=37 Identities=16% Similarity=0.095 Sum_probs=29.2
Q ss_pred eeeeeeccchhHHHHHhhhhhcCCCCCceEEEECeEe
Q 040204 47 MQIFVESSDTIDNVKAKIQDKKGTPPDQQRQIFWFVF 83 (97)
Q Consensus 47 ~~i~v~~~~TV~~lK~~I~~~~gip~~~q~Lif~G~~ 83 (97)
..|.+.|+.++.++-+...++.|+.+++..|.|+++.
T Consensus 9 ~~vkvtp~~~l~~VL~eac~k~~l~~~~~~L~h~~k~ 45 (65)
T PF11470_consen 9 FKVKVTPNTTLNQVLEEACKKFGLDPSSYDLKHNNKP 45 (65)
T ss_dssp EEE---TTSBHHHHHHHHHHHTT--GGG-EEEETTEE
T ss_pred EEEEECCCCCHHHHHHHHHHHcCCCccceEEEECCEE
Confidence 5677899999999999999999999999999999998
No 109
>PF11470 TUG-UBL1: GLUT4 regulating protein TUG; InterPro: IPR021569 TUG is a GLUT4 regulating protein and functions to retain membrane vesicles containing GLUT4 intracellularly. TUG releases the GLUT4 containing vesicles to the cellular exocytic machinery in response to insulin stimulation which allows translocation to the plasma membrane []. TUG has an N-terminal ubiquitin-like domain (UBL1) which in similar proteins appears to participate in protein-protein interactions []. The region does have a area of negative electrostatic potential and increased backbone motility which leads to suggestions of a potential protein-protein interaction site []. ; PDB: 2AL3_A.
Probab=86.77 E-value=0.52 Score=26.89 Aligned_cols=37 Identities=14% Similarity=0.023 Sum_probs=25.5
Q ss_pred cccCCCCcceEEEECCEEeCCCCCCccceec-ccceee
Q 040204 3 DKEEILRDQQRFIFAGKRLEDGRTLVDYNIH-GSTLHS 39 (97)
Q Consensus 3 ~~~gip~~~Q~L~~~g~~L~d~~tL~~y~I~-~sti~l 39 (97)
++.|+.+++=.|.|+++.|+-..+..-.|+. |+++.|
T Consensus 28 ~k~~l~~~~~~L~h~~k~ldlslp~R~snL~n~akLeL 65 (65)
T PF11470_consen 28 KKFGLDPSSYDLKHNNKPLDLSLPFRLSNLPNNAKLEL 65 (65)
T ss_dssp HHTT--GGG-EEEETTEEESSS-BHHHH---SS-EEEE
T ss_pred HHcCCCccceEEEECCEEeccccceeecCCCCCCEEeC
Confidence 4678988999999999999999999999999 998764
No 110
>PF00564 PB1: PB1 domain; InterPro: IPR000270 The Phox and Bem1p domain, is present in many eukaryotic cytoplasmic signalling proteins. The domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pairs associate.; GO: 0005515 protein binding; PDB: 1IPG_A 1IP9_A 2KFK_A 1WMH_A 1VD2_A 1WI0_A 1OEY_C 1PQS_A 1Q1O_A 1TZ1_A ....
Probab=86.17 E-value=4 Score=23.39 Aligned_cols=48 Identities=21% Similarity=0.280 Sum_probs=37.6
Q ss_pred ceeeeeeeeccee--eeeeccchhHHHHHhhhhhcCCCCCceEEEECeEe
Q 040204 36 TLHSVRRFRGGMQ--IFVESSDTIDNVKAKIQDKKGTPPDQQRQIFWFVF 83 (97)
Q Consensus 36 ti~l~i~~~~g~~--i~v~~~~TV~~lK~~I~~~~gip~~~q~Lif~G~~ 83 (97)
|+.+.+...+... +.+.++.|..+|+.+|+++.+.+.....|-|.+..
T Consensus 1 t~~vK~~~~~~~~~~~~~~~~~s~~~L~~~i~~~~~~~~~~~~l~Y~D~d 50 (84)
T PF00564_consen 1 TVRVKVRYGGDIRRIISLPSDVSFDDLRSKIREKFGLLDEDFQLKYKDED 50 (84)
T ss_dssp SEEEEEEETTEEEEEEEECSTSHHHHHHHHHHHHHTTSTSSEEEEEEETT
T ss_pred CEEEEEEECCeeEEEEEcCCCCCHHHHHHHHHHHhCCCCccEEEEeeCCC
Confidence 3445555555532 56677889999999999999999999999998866
No 111
>cd01760 RBD Ubiquitin-like domain of RBD-like S/T kinases. The ras-binding domain (RBD) of the serine/threonine kinase raf is structurally quite similar to the beta-grasp fold of ubiquitin. A raf-like RBD is also present in RGS12 and other members of a family of GTPase activating proteins and TIAM1, a guanine nucleotide exchange protein.
Probab=85.36 E-value=2.1 Score=24.85 Aligned_cols=41 Identities=20% Similarity=0.213 Sum_probs=34.7
Q ss_pred eecc--eeeeeeccchhHHHHHhhhhhcCCCCCceEEEECeEe
Q 040204 43 FRGG--MQIFVESSDTIDNVKAKIQDKKGTPPDQQRQIFWFVF 83 (97)
Q Consensus 43 ~~~g--~~i~v~~~~TV~~lK~~I~~~~gip~~~q~Lif~G~~ 83 (97)
.++| ..+.|+|.+||.++=+++.++.|+.++...|...|..
T Consensus 6 LPng~~t~V~vrpg~ti~d~L~~~c~kr~l~~~~~~v~~~~~~ 48 (72)
T cd01760 6 LPNGQRTVVPVRPGMSVRDVLAKACKKRGLNPECCDVFLLGLD 48 (72)
T ss_pred CcCCCeEEEEECCCCCHHHHHHHHHHHcCCCHHHEEEEEecCC
Confidence 4444 4578899999999999999999999999988888654
No 112
>KOG0013 consensus Uncharacterized conserved protein [Function unknown]
Probab=84.94 E-value=0.75 Score=32.25 Aligned_cols=62 Identities=18% Similarity=0.141 Sum_probs=44.2
Q ss_pred CCCCCCccceec---ccceeeeeeee---cceeeeeeccchhHHHHHhhhhhcCCCCCceEEEECeEe
Q 040204 22 EDGRTLVDYNIH---GSTLHSVRRFR---GGMQIFVESSDTIDNVKAKIQDKKGTPPDQQRQIFWFVF 83 (97)
Q Consensus 22 ~d~~tL~~y~I~---~sti~l~i~~~---~g~~i~v~~~~TV~~lK~~I~~~~gip~~~q~Lif~G~~ 83 (97)
.|..+++.++.+ +.+..+..+.. ..+.+.+...+||.++|...+.++|+.+-.|+++|.|+.
T Consensus 128 ~d~~s~ei~~ppp~~~~e~~lk~rlTtT~~d~~lta~~~Dtv~eik~~L~Aaeg~D~~sQrif~Sg~~ 195 (231)
T KOG0013|consen 128 KDSESLEIPEPPPSNHTEPILKLRLTTTREDFWLTAPHYDTVGEIKRALRAAEGVDPLSQRIFFSGGV 195 (231)
T ss_pred ccccccccCCCCCCCCCCcchHHHhhhhhhheeecccCcCcHHHHHHHHHHhhccchhhheeeccCCc
Confidence 355566666554 22333333322 224455688999999999999999999999999999988
No 113
>KOG4583 consensus Membrane-associated ER protein involved in stress response (contains ubiquitin-like domain) [Posttranslational modification, protein turnover, chaperones]
Probab=84.51 E-value=0.41 Score=35.78 Aligned_cols=51 Identities=12% Similarity=0.050 Sum_probs=36.3
Q ss_pred ceeeeeeeecc----eeeeeeccchhHHHHHhhhhhc--CCCCCceEEEECeEeCCC
Q 040204 36 TLHSVRRFRGG----MQIFVESSDTIDNVKAKIQDKK--GTPPDQQRQIFWFVFGWG 86 (97)
Q Consensus 36 ti~l~i~~~~g----~~i~v~~~~TV~~lK~~I~~~~--gip~~~q~Lif~G~~~~~ 86 (97)
.+.+.++.++. ..|..+..-||++||....... .--..+|||||.||.+..
T Consensus 9 ~v~lliks~Nq~y~dl~i~~dl~wtv~~Lk~hls~VyPskpl~~dqrliYsgkllld 65 (391)
T KOG4583|consen 9 PVTLLIKSPNQSYKDLSISLDLKWTVGDLKVHLSQVYPSKPLELDQRLIYSGKLLLD 65 (391)
T ss_pred ceEEEecCCCccccceeeehhhhhhHHHHhhhHhhcCCCCCchhhHHHHhhcccccc
Confidence 44555555443 3455577889999999988764 344678999999999543
No 114
>smart00166 UBX Domain present in ubiquitin-regulatory proteins. Present in FAF1 and Shp1p.
Probab=84.12 E-value=4.2 Score=23.50 Aligned_cols=44 Identities=18% Similarity=0.095 Sum_probs=31.9
Q ss_pred cceeeeeeeecceee--eeeccchhHHHHHhhhhhcCCCCCceEEE
Q 040204 35 STLHSVRRFRGGMQI--FVESSDTIDNVKAKIQDKKGTPPDQQRQI 78 (97)
Q Consensus 35 sti~l~i~~~~g~~i--~v~~~~TV~~lK~~I~~~~gip~~~q~Li 78 (97)
....+.+|.++|..+ ...+++||.+|.+-+....+.......|+
T Consensus 3 ~~~~I~iRlPdG~ri~~~F~~~~tl~~v~~~v~~~~~~~~~~f~L~ 48 (80)
T smart00166 3 DQCRLQIRLPDGSRLVRRFPSSDTLRTVYEFVSAALTDGNDPFTLN 48 (80)
T ss_pred CeEEEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHcccCCCCCEEEE
Confidence 345678888888544 44889999999999966566555555554
No 115
>COG5227 SMT3 Ubiquitin-like protein (sentrin) [Posttranslational modification, protein turnover, chaperones]
Probab=83.99 E-value=0.39 Score=29.38 Aligned_cols=43 Identities=26% Similarity=0.456 Sum_probs=34.6
Q ss_pred ccCCCCcceEEEECCEEeCCCCCCccceec-ccceeeeeeeecc
Q 040204 4 KEEILRDQQRFIFAGKRLEDGRTLVDYNIH-GSTLHSVRRFRGG 46 (97)
Q Consensus 4 ~~gip~~~Q~L~~~g~~L~d~~tL~~y~I~-~sti~l~i~~~~g 46 (97)
..|-..+..|+.|+|+.+.-++|-++++.. +..|..+....||
T Consensus 57 rqGK~m~slRfL~dG~rI~~dqTP~dldmEdnd~iEav~eQvGG 100 (103)
T COG5227 57 RQGKNMSSLRFLFDGKRIDLDQTPGDLDMEDNDEIEAVTEQVGG 100 (103)
T ss_pred HhCcCcceeEEEEcceecCCCCChhhcCCccchHHHHHHHHhcC
Confidence 456667889999999999999999999998 8877766554444
No 116
>PF11620 GABP-alpha: GA-binding protein alpha chain; InterPro: IPR024668 GA-binding protein alpha is a transcription factor capable of interacting with purine rich repeats (GA repeats). This N-terminal domain found in the transcription factor GABP alpha consists of a five-stranded beta-sheet crossed by a distorted helix and has been termed OST domain. The surface of the GABP alpha OST domain contains two clusters of negatively-charged residues suggesting there are positively-charged partner proteins. The OST domain binds to the CH1 and CH3 domains of the co-activator histone acetyltransferase CBP/p300 [].; PDB: 2JUO_A.
Probab=83.79 E-value=3.4 Score=24.95 Aligned_cols=55 Identities=18% Similarity=0.277 Sum_probs=29.8
Q ss_pred cccCCCCcceEEEECCEEeCCCCCCccceec-ccceeeeeeee--cc-eeee---e-eccchh
Q 040204 3 DKEEILRDQQRFIFAGKRLEDGRTLVDYNIH-GSTLHSVRRFR--GG-MQIF---V-ESSDTI 57 (97)
Q Consensus 3 ~~~gip~~~Q~L~~~g~~L~d~~tL~~y~I~-~sti~l~i~~~--~g-~~i~---v-~~~~TV 57 (97)
.+.|++-+.-.++..+..|+++++|.+-+++ ...+.+.+... .| ..|. | +|.++|
T Consensus 24 ~Rl~~~L~~~~f~LQD~~L~~~k~L~dQcVqgeGlVQlnvQi~s~~~~~riNIvdVlKP~e~~ 86 (88)
T PF11620_consen 24 RRLGISLSDYEFWLQDIQLEPHKSLVDQCVQGEGLVQLNVQIKSNQGEPRINIVDVLKPAEDV 86 (88)
T ss_dssp HHH-S--SS-EEEETTEE--TTSBTTTSS----SEEEEEEEEE--TT--EEEEEEEEETTS--
T ss_pred HhhCCCcCCCeEEeccceecCCccHHHhhccccCEEEEEEEEEecCCCcceEEEEeeccchhc
Confidence 4556777777788888889999999999999 77777665432 22 2222 2 777665
No 117
>PF13019 Telomere_Sde2: Telomere stability and silencing
Probab=82.92 E-value=3.1 Score=27.94 Aligned_cols=34 Identities=15% Similarity=0.290 Sum_probs=27.3
Q ss_pred eeeeeeccchhHHHHHhhhhhcCCCCCce-EEEEC
Q 040204 47 MQIFVESSDTIDNVKAKIQDKKGTPPDQQ-RQIFW 80 (97)
Q Consensus 47 ~~i~v~~~~TV~~lK~~I~~~~gip~~~q-~Lif~ 80 (97)
..+.+.++.||.+|+..|.+..++|+..| .|.+.
T Consensus 17 l~~~lp~~ttv~dL~~~l~~~~~~~~~~~~~L~~~ 51 (162)
T PF13019_consen 17 LSLSLPSTTTVSDLKDRLSERLPIPSSSQLYLTTN 51 (162)
T ss_pred EEeeCCCCCcHHHHHHHHHhhcCCCccceeEEEEe
Confidence 34556888999999999999999998874 45554
No 118
>COG0299 PurN Folate-dependent phosphoribosylglycinamide formyltransferase PurN [Nucleotide transport and metabolism]
Probab=81.86 E-value=1.5 Score=30.35 Aligned_cols=42 Identities=19% Similarity=0.289 Sum_probs=31.9
Q ss_pred ccceec--ccceeeeeeeeccee------eeeeccchhHHHHHhhhhhcC
Q 040204 28 VDYNIH--GSTLHSVRRFRGGMQ------IFVESSDTIDNVKAKIQDKKG 69 (97)
Q Consensus 28 ~~y~I~--~sti~l~i~~~~g~~------i~v~~~~TV~~lK~~I~~~~g 69 (97)
-++|.+ |+|+|++-.-.++-+ +.|.+.||.+++.++|++.|-
T Consensus 125 ~~aG~k~sG~TVH~V~e~vD~GpII~Q~~Vpv~~~Dt~etl~~RV~~~Eh 174 (200)
T COG0299 125 LEAGVKVSGCTVHFVTEGVDTGPIIAQAAVPVLPGDTAETLEARVLEQEH 174 (200)
T ss_pred HHcCCCccCcEEEEEccCCCCCCeEEEEeeeecCCCCHHHHHHHHHHHHH
Confidence 356776 999999886544422 445889999999999998874
No 119
>PF10302 DUF2407: DUF2407 ubiquitin-like domain; InterPro: IPR019413 This entry represents a family of proteins of unknown function found in fungi. They contain a characteristic GFDRL sequence motif.
Probab=80.14 E-value=0.97 Score=27.73 Aligned_cols=23 Identities=35% Similarity=0.527 Sum_probs=18.2
Q ss_pred CCcceEEEECCEEeCCCCCCccc
Q 040204 8 LRDQQRFIFAGKRLEDGRTLVDY 30 (97)
Q Consensus 8 p~~~Q~L~~~g~~L~d~~tL~~y 30 (97)
.-..+||+|+|+.|.|+..++.-
T Consensus 42 s~~rLRlI~~Gr~L~d~t~l~~~ 64 (97)
T PF10302_consen 42 SRRRLRLIYAGRLLNDHTDLSSE 64 (97)
T ss_pred ccccEEeeecCcccCccchhhhh
Confidence 34569999999999998776643
No 120
>KOG3206 consensus Alpha-tubulin folding cofactor B [Posttranslational modification, protein turnover, chaperones]
Probab=78.89 E-value=2.8 Score=29.41 Aligned_cols=31 Identities=19% Similarity=0.164 Sum_probs=27.0
Q ss_pred eeeeccchhHHHHHhhhhhcCCCCCceEEEE
Q 040204 49 IFVESSDTIDNVKAKIQDKKGTPPDQQRQIF 79 (97)
Q Consensus 49 i~v~~~~TV~~lK~~I~~~~gip~~~q~Lif 79 (97)
....++.||+++|.+++-..|.+++.+.|.-
T Consensus 17 kr~~~~ltl~q~K~KLe~~~G~~~~~M~l~l 47 (234)
T KOG3206|consen 17 KRLSNSLTLAQFKDKLELLTGTEAESMELEL 47 (234)
T ss_pred hhcCCcCcHHHHHhhhhhhhCCCccceEEEE
Confidence 4447789999999999999999999998853
No 121
>smart00666 PB1 PB1 domain. Phox and Bem1p domain, present in many eukaryotic cytoplasmic signalling proteins. The domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pairs associate.
Probab=78.64 E-value=9.9 Score=21.62 Aligned_cols=36 Identities=8% Similarity=0.092 Sum_probs=31.2
Q ss_pred eeeeeccchhHHHHHhhhhhcCCCCCceEEEECeEe
Q 040204 48 QIFVESSDTIDNVKAKIQDKKGTPPDQQRQIFWFVF 83 (97)
Q Consensus 48 ~i~v~~~~TV~~lK~~I~~~~gip~~~q~Lif~G~~ 83 (97)
.+.+.++.|-.+|+.+|.++.+.+.....|-|.+..
T Consensus 14 ~~~~~~~~s~~dL~~~i~~~~~~~~~~~~l~Y~Ded 49 (81)
T smart00666 14 RLSVPRDISFEDLRSKVAKRFGLDNQSFTLKYQDED 49 (81)
T ss_pred EEEECCCCCHHHHHHHHHHHhCCCCCCeEEEEECCC
Confidence 355677889999999999999998889999999765
No 122
>PF00789 UBX: UBX domain; InterPro: IPR001012 The UBX domain is found in ubiquitin-regulatory proteins, which are members of the ubiquitination pathway, as well as a number of other proteins including FAF-1 (FAS-associated factor 1), the human Rep-8 reproduction protein and several hypothetical proteins from yeast. The function of the UBX domain is not known although the fragment of avian FAF-1 containing the UBX domain causes apoptosis of transfected cells.; GO: 0005515 protein binding; PDB: 3QX1_A 1H8C_A 3QCA_B 3QQ8_B 3QC8_B 3R3M_A 3QWZ_B 1S3S_H 1JRU_A 1I42_A ....
Probab=78.51 E-value=10 Score=21.70 Aligned_cols=45 Identities=16% Similarity=0.204 Sum_probs=34.1
Q ss_pred ccceeeeeeeeccee--eeeeccchhHHHHHhhhhhcCCCCCc-eEEE
Q 040204 34 GSTLHSVRRFRGGMQ--IFVESSDTIDNVKAKIQDKKGTPPDQ-QRQI 78 (97)
Q Consensus 34 ~sti~l~i~~~~g~~--i~v~~~~TV~~lK~~I~~~~gip~~~-q~Li 78 (97)
...+.+.++.++|.. -...+++||.+|.+-|......+... ..|+
T Consensus 4 ~~~~~I~vRlpdG~~l~~~F~~~~tl~~l~~~v~~~~~~~~~~~f~L~ 51 (82)
T PF00789_consen 4 SDVVRIQVRLPDGSRLQRRFPKSDTLQDLYDFVESQLFSPEESDFELI 51 (82)
T ss_dssp SSEEEEEEEETTSTEEEEEEETTSBHHHHHHHHHHHHHCTTTSSEEEE
T ss_pred CCEEEEEEECCCCCEEEEEECCcchHHHHHHHHHHhcCCCCCccEEEE
Confidence 356778899999854 34589999999999998876655544 6665
No 123
>PF11069 DUF2870: Protein of unknown function (DUF2870); InterPro: IPR021298 This is a eukaryotic family of proteins with unknown function.
Probab=77.72 E-value=3.4 Score=25.49 Aligned_cols=33 Identities=30% Similarity=0.480 Sum_probs=23.1
Q ss_pred EEEECCEEeCCCCCCccceeccc--ceeeeeeeec
Q 040204 13 RFIFAGKRLEDGRTLVDYNIHGS--TLHSVRRFRG 45 (97)
Q Consensus 13 ~L~~~g~~L~d~~tL~~y~I~~s--ti~l~i~~~~ 45 (97)
.|.|+||+|..+.+|++|-=.+. .|.+.+...+
T Consensus 3 ~LW~aGK~l~~~k~l~dy~GkNEKtKiivKl~~~g 37 (98)
T PF11069_consen 3 QLWWAGKELQRGKKLSDYIGKNEKTKIIVKLQKRG 37 (98)
T ss_pred eEEeccccccCCCcHHHhcCCCcceeEEEEeccCC
Confidence 58899999999999999932344 4444443333
No 124
>cd01774 Faf1_like2_UBX Faf1 ike-2 UBX domain. Faf1_like2 is a protein of unknown function with a domain architecture that includes the UAS (ubiquitin-associated) and UBX (ubiquitin-like) domains. This protein is related to other UBA/UBX-containing proteins like Faf1, p47, and SAKS1 and may serve as an adaptor molecule that shuttles proteins to the proteasome for degradation. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=75.86 E-value=11 Score=22.34 Aligned_cols=46 Identities=11% Similarity=0.177 Sum_probs=34.1
Q ss_pred cceeeeeeeecceeee--eeccchhHHHHHhhhhhcCCCCCceEEEECe
Q 040204 35 STLHSVRRFRGGMQIF--VESSDTIDNVKAKIQDKKGTPPDQQRQIFWF 81 (97)
Q Consensus 35 sti~l~i~~~~g~~i~--v~~~~TV~~lK~~I~~~~gip~~~q~Lif~G 81 (97)
..+.+.+|+++|..+. ...++||++|.+=|.. .+..++...|+.+=
T Consensus 3 ~~~~I~iRlp~G~Rl~rrF~~~~tl~~l~~fv~~-~~~~~~~f~L~t~F 50 (85)
T cd01774 3 DTVKIVFKLPNGTRVERRFLFTQSLRVIHDFLFS-LKETPEKFQIVTNF 50 (85)
T ss_pred ceEEEEEECCCCCEEEEEeCCCCcHHHHHHHHHh-CCCCCCcEEEecCC
Confidence 3567888999986543 3778999999999964 44456788887754
No 125
>COG5417 Uncharacterized small protein [Function unknown]
Probab=75.82 E-value=2.7 Score=24.83 Aligned_cols=30 Identities=27% Similarity=0.437 Sum_probs=25.4
Q ss_pred cceEEEECCEEeCCCCCCccceec-ccceee
Q 040204 10 DQQRFIFAGKRLEDGRTLVDYNIH-GSTLHS 39 (97)
Q Consensus 10 ~~Q~L~~~g~~L~d~~tL~~y~I~-~sti~l 39 (97)
++.+....++.|+++..|.+|+|. |+.+.+
T Consensus 50 ~~Ikv~nKa~llsgd~kL~d~~IadGD~Lei 80 (81)
T COG5417 50 TQIKVMNKAQLLSGDDKLIDYQIADGDILEI 80 (81)
T ss_pred CEEEEeccceEecCCceEEeccccCCCEEEe
Confidence 456777889999999999999999 887754
No 126
>KOG1769 consensus Ubiquitin-like proteins [Posttranslational modification, protein turnover, chaperones]
Probab=71.90 E-value=19 Score=22.32 Aligned_cols=36 Identities=8% Similarity=0.082 Sum_probs=32.2
Q ss_pred eeeeeccchhHHHHHhhhhhcCCCCCceEEEECeEe
Q 040204 48 QIFVESSDTIDNVKAKIQDKKGTPPDQQRQIFWFVF 83 (97)
Q Consensus 48 ~i~v~~~~TV~~lK~~I~~~~gip~~~q~Lif~G~~ 83 (97)
.+.|+.+.+...|...-+++.|++.+..|..|.|+.
T Consensus 34 ~Fkikr~t~LkKLM~aYc~r~Gl~~~s~RFlFdG~r 69 (99)
T KOG1769|consen 34 VFKIKRHTPLKKLMKAYCERQGLSMNSLRFLFDGQR 69 (99)
T ss_pred EEEeecCChHHHHHHHHHHHcCCccceEEEEECCcC
Confidence 355688888889999999999999999999999987
No 127
>KOG3076 consensus 5'-phosphoribosylglycinamide formyltransferase [Carbohydrate transport and metabolism]
Probab=71.57 E-value=3.7 Score=28.47 Aligned_cols=40 Identities=23% Similarity=0.360 Sum_probs=30.1
Q ss_pred ceec--ccceeeeeeeecc------eeeeeeccchhHHHHHhhhhhcC
Q 040204 30 YNIH--GSTLHSVRRFRGG------MQIFVESSDTIDNVKAKIQDKKG 69 (97)
Q Consensus 30 y~I~--~sti~l~i~~~~g------~~i~v~~~~TV~~lK~~I~~~~g 69 (97)
.|+. |+|+|.+....+. ..+.|.++||++++-++|+..|.
T Consensus 135 agv~~~GctvHfV~EevD~G~iI~q~~v~V~~~Dt~esl~qrv~~aEH 182 (206)
T KOG3076|consen 135 AGVKLSGCTVHFVIEEVDTGPIIAQMAVPVIPGDTLESLEQRVHDAEH 182 (206)
T ss_pred hccccccceEEEehhhccCCCceEEEeeeecCCCCHHHHHHHHHHHHH
Confidence 3455 8999998875433 22445899999999999998774
No 128
>PF14533 USP7_C2: Ubiquitin-specific protease C-terminal; PDB: 2YLM_A.
Probab=70.60 E-value=4.3 Score=28.04 Aligned_cols=25 Identities=20% Similarity=0.466 Sum_probs=17.3
Q ss_pred eeeeeeccchhHHHHHhhhhhcCCC
Q 040204 47 MQIFVESSDTIDNVKAKIQDKKGTP 71 (97)
Q Consensus 47 ~~i~v~~~~TV~~lK~~I~~~~gip 71 (97)
+.+.|.+.+|..++|++|+++.|++
T Consensus 135 F~f~v~~gE~f~~tK~Rl~~rlgv~ 159 (213)
T PF14533_consen 135 FLFVVKPGETFSDTKERLQKRLGVS 159 (213)
T ss_dssp EEEEEETT--HHHHHHHHHHHH---
T ss_pred EEEEeeCCCcHHHHHHHHHHHhCCC
Confidence 3455699999999999999999998
No 129
>KOG3439 consensus Protein conjugation factor involved in autophagy [Posttranslational modification, protein turnover, chaperones]
Probab=68.48 E-value=15 Score=23.24 Aligned_cols=48 Identities=8% Similarity=-0.002 Sum_probs=37.3
Q ss_pred ceeeeeeeeccee------eeeeccchhHHHHHhhhhhcCCCCCceEEEECeEe
Q 040204 36 TLHSVRRFRGGMQ------IFVESSDTIDNVKAKIQDKKGTPPDQQRQIFWFVF 83 (97)
Q Consensus 36 ti~l~i~~~~g~~------i~v~~~~TV~~lK~~I~~~~gip~~~q~Lif~G~~ 83 (97)
.+.+..+.-|+.. ..|++++|++.+-.-+...-+++++++-.+|=+.-
T Consensus 30 kV~i~l~aiG~~PilK~~k~~i~~t~tfa~vi~Flkk~Lkl~as~slflYVN~s 83 (116)
T KOG3439|consen 30 KVQIRLRAIGDAPILKKSKFKINPTQTFAKVILFLKKFLKLQASDSLFLYVNNS 83 (116)
T ss_pred eEEEEEeccCCCcceecceEEeCcchhhHHHHHHHHHHhCCcccCeEEEEEcCc
Confidence 4555555555532 34699999999999999999999999999986543
No 130
>cd05992 PB1 The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as a noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants.
Probab=68.24 E-value=19 Score=20.25 Aligned_cols=42 Identities=17% Similarity=0.189 Sum_probs=32.2
Q ss_pred eeecc-eeeeee-ccchhHHHHHhhhhhcCCCCCceEEEECeEe
Q 040204 42 RFRGG-MQIFVE-SSDTIDNVKAKIQDKKGTPPDQQRQIFWFVF 83 (97)
Q Consensus 42 ~~~~g-~~i~v~-~~~TV~~lK~~I~~~~gip~~~q~Lif~G~~ 83 (97)
...++ ..+.+. .+.|..+|+++|.++.+.+.....+-|.+-.
T Consensus 6 ~~~~~~~~~~~~~~~~s~~~L~~~i~~~~~~~~~~~~l~y~D~e 49 (81)
T cd05992 6 KYGGEIRRFVVVSRSISFEDLRSKIAEKFGLDAVSFKLKYPDED 49 (81)
T ss_pred EecCCCEEEEEecCCCCHHHHHHHHHHHhCCCCCcEEEEeeCCC
Confidence 33344 335556 7889999999999999988778888888765
No 131
>PF02196 RBD: Raf-like Ras-binding domain; InterPro: IPR003116 This is the Ras-binding domain found in proteins related to Ras. It is found in association with the PE-bind and pkinase domains.; GO: 0005057 receptor signaling protein activity, 0007165 signal transduction; PDB: 1RFA_A 1C1Y_B 3KUD_B 1GUA_B 3KUC_B 2L05_A 3NY5_D 1RRB_A 1WFY_A 1WXM_A.
Probab=66.78 E-value=22 Score=20.28 Aligned_cols=41 Identities=20% Similarity=0.170 Sum_probs=28.8
Q ss_pred eeecc--eeeeeeccchhHHHHHhhhhhcCCCCCceEEEECeE
Q 040204 42 RFRGG--MQIFVESSDTIDNVKAKIQDKKGTPPDQQRQIFWFV 82 (97)
Q Consensus 42 ~~~~g--~~i~v~~~~TV~~lK~~I~~~~gip~~~q~Lif~G~ 82 (97)
-.++| ..+.++|..||.++=+++.++.|+.++.-.+.-.|.
T Consensus 6 ~LP~~q~t~V~vrpg~ti~d~L~~~~~kr~L~~~~~~V~~~~~ 48 (71)
T PF02196_consen 6 HLPNGQRTVVQVRPGMTIRDALSKACKKRGLNPECCDVRLVGE 48 (71)
T ss_dssp EETTTEEEEEEE-TTSBHHHHHHHHHHTTT--CCCEEEEEEEE
T ss_pred ECCCCCEEEEEEcCCCCHHHHHHHHHHHcCCCHHHEEEEEcCC
Confidence 34555 346779999999999999999999997666654553
No 132
>PF15044 CLU_N: Mitochondrial function, CLU-N-term
Probab=64.99 E-value=5.9 Score=23.03 Aligned_cols=30 Identities=30% Similarity=0.399 Sum_probs=23.2
Q ss_pred eEEEECCEEeCCCCCCccc-eec-ccceeeee
Q 040204 12 QRFIFAGKRLEDGRTLVDY-NIH-GSTLHSVR 41 (97)
Q Consensus 12 Q~L~~~g~~L~d~~tL~~y-~I~-~sti~l~i 41 (97)
-.|.++|+.|++...+++. ++. ++++.++.
T Consensus 26 ~~L~~~g~~L~~~~el~~i~~~~~~~~L~lve 57 (76)
T PF15044_consen 26 FSLEHNGQRLDDFVELSEIEGIKDGCVLELVE 57 (76)
T ss_pred EEEEECCCccCCchhhhhhhCCCCCcEEEEEe
Confidence 4677899999998888887 466 77776664
No 133
>KOG1639 consensus Steroid reductase required for elongation of the very long chain fatty acids [Lipid transport and metabolism]
Probab=63.25 E-value=2.5 Score=30.53 Aligned_cols=39 Identities=28% Similarity=0.359 Sum_probs=26.9
Q ss_pred CCCCcceEEEE----CCEEeCCCCCCccceec-ccceeeeeeeecc
Q 040204 6 EILRDQQRFIF----AGKRLEDGRTLVDYNIH-GSTLHSVRRFRGG 46 (97)
Q Consensus 6 gip~~~Q~L~~----~g~~L~d~~tL~~y~I~-~sti~l~i~~~~g 46 (97)
.+.+..+|+.+ +|++|.|+.+|.+|+.. ++++ .++..|.
T Consensus 38 k~~~~~~r~tlr~e~kgkpl~~~s~l~e~~~~s~~~i--~vKDLGp 81 (297)
T KOG1639|consen 38 KITPYRIRLTLRVEPKGKPLIDNSKLQEYGDGSGATI--YVKDLGP 81 (297)
T ss_pred ccCccchhheeeccCCCccccchhHHHHhccCCCCEE--EEeccCC
Confidence 44454444444 89999999999999988 7555 4454443
No 134
>KOG4583 consensus Membrane-associated ER protein involved in stress response (contains ubiquitin-like domain) [Posttranslational modification, protein turnover, chaperones]
Probab=62.42 E-value=0.38 Score=35.95 Aligned_cols=36 Identities=31% Similarity=0.373 Sum_probs=28.9
Q ss_pred CcceEEEECCEEeCCCCCCccceec---ccceeeeeeee
Q 040204 9 RDQQRFIFAGKRLEDGRTLVDYNIH---GSTLHSVRRFR 44 (97)
Q Consensus 9 ~~~Q~L~~~g~~L~d~~tL~~y~I~---~sti~l~i~~~ 44 (97)
+.+|||+|.||.|.|..++.|.-++ .-.+|++++.+
T Consensus 51 ~~dqrliYsgkllld~qcl~d~lrkq~k~Hv~hlvcnsk 89 (391)
T KOG4583|consen 51 ELDQRLIYSGKLLLDHQCLTDWLRKQVKEHVKHLVCNSK 89 (391)
T ss_pred hhhHHHHhhccccccchhHHHHHHHHHHHHHHHHhcCCC
Confidence 3579999999999999999999876 45666666433
No 135
>cd01767 UBX UBX (ubiquitin regulatory X) domain. The UBX (ubiquitin regulatory X) domain has a beta-grasp fold that is structurally quite similar to ubiquitin although UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins. Most UBX-containing proteins including p47, FAF1, and SAKS1 (Y33K) also contain a UBA (ubiquitin-associated) domain and are thought to serve as adaptor molecules that shuttle proteins to the proteasome for degradation.
Probab=61.77 E-value=28 Score=19.76 Aligned_cols=42 Identities=12% Similarity=0.207 Sum_probs=28.9
Q ss_pred ceeeeeeeecceee--eeeccchhHHHHHhhhhhcCCCCCceEEE
Q 040204 36 TLHSVRRFRGGMQI--FVESSDTIDNVKAKIQDKKGTPPDQQRQI 78 (97)
Q Consensus 36 ti~l~i~~~~g~~i--~v~~~~TV~~lK~~I~~~~gip~~~q~Li 78 (97)
+..+.+|+++|..+ ....++||.+|.+=|.....- .....|+
T Consensus 2 ~t~i~iRlpdG~~~~~~F~~~~tl~~l~~fv~~~~~~-~~~f~L~ 45 (77)
T cd01767 2 TTKIQIRLPDGKRLEQRFNSTHKLSDVRDFVESNGPP-AEPFTLM 45 (77)
T ss_pred cEEEEEEcCCCCEEEEEeCCCCCHHHHHHHHHHcCCC-CCCEEEE
Confidence 45677888888543 448899999999999765432 3444554
No 136
>cd06409 PB1_MUG70 The MUG70 protein is a product of the meiotically up-regulated gene 70 which has a role in meiosis and harbors a PB1 domain. The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domains depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic amino acid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is
Probab=61.65 E-value=25 Score=21.11 Aligned_cols=36 Identities=8% Similarity=0.122 Sum_probs=29.7
Q ss_pred eeeeeccchhHHHHHhhhhhcCCCC---CceEEEECeEe
Q 040204 48 QIFVESSDTIDNVKAKIQDKKGTPP---DQQRQIFWFVF 83 (97)
Q Consensus 48 ~i~v~~~~TV~~lK~~I~~~~gip~---~~q~Lif~G~~ 83 (97)
.+.+.|+..+.+|++.|.++.|+.. +...|.|-.-+
T Consensus 14 Rf~~~~s~~~~~L~~~I~~Rl~~d~~~~~~~~L~YlDDE 52 (86)
T cd06409 14 RFRLRPSESLEELRTLISQRLGDDDFETHLYALSYVDDE 52 (86)
T ss_pred EEEecCCCCHHHHHHHHHHHhCCccccCCcccEEEEcCC
Confidence 3566889999999999999999886 57888886655
No 137
>PF12436 USP7_ICP0_bdg: ICP0-binding domain of Ubiquitin-specific protease 7; InterPro: IPR024729 This domain is found in eukaryotes, and is approximately 40 amino acids in length. It is found in proteins of the peptidase C19 family, which contains contains ubiquitinyl hydrolases like ubiquitin-specific protease 7 (USP7). USP7 regulates the turnover of p53 [].; PDB: 2KVR_A 2YLM_A.
Probab=61.53 E-value=20 Score=25.30 Aligned_cols=76 Identities=12% Similarity=0.285 Sum_probs=45.4
Q ss_pred cccCCCCcceEEEE----CCE--EeCCCCCCccceec-ccceeeeeeee-------------------------------
Q 040204 3 DKEEILRDQQRFIF----AGK--RLEDGRTLVDYNIH-GSTLHSVRRFR------------------------------- 44 (97)
Q Consensus 3 ~~~gip~~~Q~L~~----~g~--~L~d~~tL~~y~I~-~sti~l~i~~~------------------------------- 44 (97)
+.-|.|++..-++| .++ .++...|+....+. |+.|.+-....
T Consensus 106 ~~~g~p~~t~l~lyEEi~~~~ie~i~~~~t~~~~el~~GdIi~fQ~~~~~~~~~~~~~~~v~~Yy~~l~nrv~V~f~~~~ 185 (249)
T PF12436_consen 106 ERAGLPPDTPLLLYEEIKPNMIEPIDPNQTFEKAELQDGDIICFQRAPSEDLDKSSRYPDVKEYYDFLYNRVEVEFKPKD 185 (249)
T ss_dssp HHHT--TT--EEEEEEEETTEEEE--SSSBHHHTT--TTEEEEEEE--GG--GGGSSS-SHHHHHHHHHHEEEEEEEETT
T ss_pred HHcCCCCCCceEEEEEeccceeeEcCCCCchhhcccCCCCEEEEEeccccccccccCCCCHHHHHHHHhCeEEEEEEECC
Confidence 45678887777777 232 37888999999998 88776655221
Q ss_pred ----cceeeeeeccchhHHHHHhhhhhcCCCCCceEEE
Q 040204 45 ----GGMQIFVESSDTIDNVKAKIQDKKGTPPDQQRQI 78 (97)
Q Consensus 45 ----~g~~i~v~~~~TV~~lK~~I~~~~gip~~~q~Li 78 (97)
.++.+.+....|-.++-++|.+..|+.|+..++.
T Consensus 186 ~~~~~~F~l~ls~~~tY~~la~~Va~~l~~dP~~lr~~ 223 (249)
T PF12436_consen 186 NPNDPEFTLWLSKKMTYDQLAEKVAEHLNVDPEHLRFF 223 (249)
T ss_dssp STT---EEEEEETT--HHHHHHHHHHHHTS-GGGEEEE
T ss_pred CCCCCCEEEEECCCCCHHHHHHHHHHHHCCChHHEEEE
Confidence 1244555778899999999999999988877664
No 138
>smart00295 B41 Band 4.1 homologues. Also known as ezrin/radixin/moesin (ERM) protein domains. Present in myosins, ezrin, radixin, moesin, protein tyrosine phosphatases. Plasma membrane-binding domain. These proteins play structural and regulatory roles in the assembly and stabilization of specialized plasmamembrane domains. Some PDZ domain containing proteins bind one or more of this family. Now includes JAKs.
Probab=60.89 E-value=35 Score=22.43 Aligned_cols=36 Identities=19% Similarity=0.169 Sum_probs=28.0
Q ss_pred eeeeeeeecc--eeeeeeccchhHHHHHhhhhhcCCCC
Q 040204 37 LHSVRRFRGG--MQIFVESSDTIDNVKAKIQDKKGTPP 72 (97)
Q Consensus 37 i~l~i~~~~g--~~i~v~~~~TV~~lK~~I~~~~gip~ 72 (97)
+.+.+...+| ..+.++++.||+++-..+.++.|++.
T Consensus 4 ~~~~V~l~dg~~~~~~~~~~~t~~ev~~~v~~~~~l~~ 41 (207)
T smart00295 4 RVLKVYLLDGTTLEFEVDSSTTAEELLETVCRKLGIRE 41 (207)
T ss_pred EEEEEEecCCCEEEEEECCCCCHHHHHHHHHHHhCCCc
Confidence 3455556666 45677999999999999999999853
No 139
>PF10790 DUF2604: Protein of Unknown function (DUF2604); InterPro: IPR019726 This entry represents bacterial proteins with undetermined function.
Probab=60.67 E-value=7.4 Score=22.40 Aligned_cols=36 Identities=14% Similarity=0.218 Sum_probs=26.7
Q ss_pred CCCcceEEEE-CCEEeCCCCCCccceec-ccceeeeee
Q 040204 7 ILRDQQRFIF-AGKRLEDGRTLVDYNIH-GSTLHSVRR 42 (97)
Q Consensus 7 ip~~~Q~L~~-~g~~L~d~~tL~~y~I~-~sti~l~i~ 42 (97)
-|++.=.|-= +|..|+-++.+.|||+. +.++++..+
T Consensus 34 QP~ENWElkDe~G~vlD~~kKveD~GftngvkLFLsLK 71 (76)
T PF10790_consen 34 QPPENWELKDESGQVLDVNKKVEDFGFTNGVKLFLSLK 71 (76)
T ss_pred CCcccceeeccCCcEeeccchhhhccccccceEEEEee
Confidence 3444444443 78888889999999999 988887665
No 140
>cd06407 PB1_NLP A PB1 domain is present in NIN like proteins (NLP), a key enzyme in a process of establishment of symbiosis betweeen legumes and nitrogen fixing bacteria (Rhizobium). The PB1 domain is a modular domain mediating specific protein-protein interaction which play a role in many critical cell processes like osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-inte
Probab=59.70 E-value=33 Score=20.17 Aligned_cols=37 Identities=8% Similarity=-0.057 Sum_probs=30.0
Q ss_pred eeeeeeccchhHHHHHhhhhhcCCCC-CceEEEECeEe
Q 040204 47 MQIFVESSDTIDNVKAKIQDKKGTPP-DQQRQIFWFVF 83 (97)
Q Consensus 47 ~~i~v~~~~TV~~lK~~I~~~~gip~-~~q~Lif~G~~ 83 (97)
..+.+.++.+..+|+++|.++.++.. ....|-|..-.
T Consensus 12 ~r~~l~~~~~~~~L~~~i~~r~~~~~~~~f~LkY~Dde 49 (82)
T cd06407 12 IRFRLPPSWGFTELKQEIAKRFKLDDMSAFDLKYLDDD 49 (82)
T ss_pred EEEEcCCCCCHHHHHHHHHHHhCCCCCCeeEEEEECCC
Confidence 34566888899999999999999865 67888887655
No 141
>cd01771 Faf1_UBX Faf1 UBX domain. Faf1 (fas-associated factor1) is a nucleolar protein that was first identified as an interaction partner of the death receptor Fas. Faf1 contains N-terminal UAS (ubiquitin-associated) and C-terminal UBX (ubiquitin-like) domains and is closely related to other UBA/UBX-containing proteins like p47, Rep8 and SAKS1. Faf1 is thought to be involved in 18S rRNA synthesis and/or 40S ribosomal subunit assembly. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=59.27 E-value=34 Score=19.97 Aligned_cols=43 Identities=14% Similarity=0.123 Sum_probs=32.6
Q ss_pred cceeeeeeeecceee--eeeccchhHHHHHhhhhhcCCCCCceEEE
Q 040204 35 STLHSVRRFRGGMQI--FVESSDTIDNVKAKIQDKKGTPPDQQRQI 78 (97)
Q Consensus 35 sti~l~i~~~~g~~i--~v~~~~TV~~lK~~I~~~~gip~~~q~Li 78 (97)
.++.+.+++++|..+ ....++|+.+|-.=+.. .|.++...+|+
T Consensus 3 ~~~~i~iRlP~G~r~~rrF~~t~~L~~l~~fv~~-~~~~~~~f~L~ 47 (80)
T cd01771 3 PISKLRVRTPSGDFLERRFLGDTPLQVLLNFVAS-KGYPIDEYKLL 47 (80)
T ss_pred CeEEEEEECCCCCEEEEEeCCCCcHHHHHHHHHh-cCCCCCCEEEe
Confidence 356788899888544 34889999999998875 47777777775
No 142
>PF09379 FERM_N: FERM N-terminal domain ; InterPro: IPR018979 This domain is the N-terminal ubiquitin-like structural domain of the FERM domain. The FERM domain (F for 4.1 protein, E for ezrin, R for radixin and M for moesin) is a widespread protein module involved in localising proteins to the plasma membrane []. FERM domains are found in a number of cytoskeletal-associated proteins that associate with various proteins at the interface between the plasma membrane and the cytoskeleton. The FERM domain is located at the N terminus of the majority of FERM-containing proteins [, ], which includes: Band 4.1, which links the spectrin-actin cytoskeleton of erythrocytes to the plasma membrane. Ezrin, a component of the undercoat of the microvilli plasma membrane. Moesin, which is probably involved in binding major cytoskeletal structures to the plasma membrane. Radixin, which is involved in the binding of the barbed end of actin filaments to the plasma membrane in the undercoat of the cell- to-cell adherens junction. Talin, a cytoskeletal protein concentrated in regions of cell-substratum contact and, in lymphocytes, of cell-cell contacts. Filopodin, a slime mold protein that binds actin and which is involved in the control of cell motility and chemotaxis. Merlin (or schwannomin). Protein NBL4. Unconventional myosins X, VIIa and XV, which are mutated in congenital deafness. Focal-adhesion kinases (FAKs), cytoplasmic protein tyrosine kinases involved in signalling through integrins. Janus tyrosine kinases (JAKs), cytoplasmic tyrosine kinases that are non-covalently associated with the cytoplasmic tails of receptors for cytokines or polypeptidic hormones. Non-receptor tyrosine-protein kinase TYK2. Protein-tyrosine phosphatases PTPN3 and PTPN4, enzyme that appear to act at junctions between the membrane and the cytoskeleton. Protein-tyrosine phosphatases PTPN14 and PTP-D1, PTP-RL10 and PTP2E. Caenorhabditis elegans protein phosphatase ptp-1. Ezrin, moesin, and radixin are highly related proteins (ERM protein family), but the other proteins in which the FERM domain is found do not share any region of similarity outside of this domain. ERM proteins are made of three domains, the FERM domain, a central helical domain and a C-terminal tail domain, which binds F-actin. The amino-acid sequence of the FERM domain is highly conserved among ERM proteins and is responsible for membrane association by direct binding to the cytoplasmic domain or tail of integral membrane proteins. ERM proteins are regulated by an intramolecular association of the FERM and C-terminal tail domains that masks their binding sites for other molecules. For cytoskeleton-membrane cross-linking, the dormant molecules becomes activated and the FERM domain attaches to the membrane by binding specific membrane proteins, while the last 34 residues of the tail bind actin filaments. Aside from binding to membranes, the activated FERM domain of ERM proteins can also bind the guanine nucleotide dissociation inhibitor of Rho GTPase (RhoDGI), which suggests that in addition to functioning as a cross-linker, ERM proteins may influence Rho signalling pathways. The crystal structure of the FERM domain reveals that it is composed of three structural modules (F1, F2, and F3) that together form a compact clover-shaped structure []. The FERM domain has also been called the amino-terminal domain, the 30kDa domain, 4.1N30, the membrane-cytoskeletal-linking domain, the ERM-like domain, the ezrin-like domain of the band 4.1 superfamily, the conserved N-terminal region, and the membrane attachment domain [].; PDB: 1EF1_B 1SGH_A 1E5W_A 2KC2_A 2KMA_A 3IVF_A 1H4R_B 3U8Z_A 1ISN_A 3BIN_A ....
Probab=59.14 E-value=22 Score=19.99 Aligned_cols=37 Identities=16% Similarity=0.188 Sum_probs=29.4
Q ss_pred eecc--eeeeeeccchhHHHHHhhhhhcCCC-CCceEEEE
Q 040204 43 FRGG--MQIFVESSDTIDNVKAKIQDKKGTP-PDQQRQIF 79 (97)
Q Consensus 43 ~~~g--~~i~v~~~~TV~~lK~~I~~~~gip-~~~q~Lif 79 (97)
..+| .++.++++.|+.++=++|.++.|+. .+-.-|.|
T Consensus 3 llD~~~~~~~v~~~~t~~~l~~~v~~~l~l~e~~~FgL~~ 42 (80)
T PF09379_consen 3 LLDGTTKTFEVDPKTTGQDLLEQVCDKLGLKEKEYFGLQY 42 (80)
T ss_dssp ESSEEEEEEEEETTSBHHHHHHHHHHHHTTSSGGGEEEEE
T ss_pred CcCCCcEEEEEcCCCcHHHHHHHHHHHcCCCCccEEEEEE
Confidence 3444 4577799999999999999999974 56677777
No 143
>cd01773 Faf1_like1_UBX Faf1 ike-1 UBX domain. Faf1_like1 is a protein of unknown function with a domain architecture that includes the UAS (ubiquitin-associated) and UBX (ubiquitin-like) domains. This protein is related to other UBA/UBX-containing proteins like Faf1, p47, and SAKS1 and may serve as an adaptor molecule that shuttles proteins to the proteasome for degradation. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=59.04 E-value=36 Score=20.19 Aligned_cols=44 Identities=14% Similarity=0.228 Sum_probs=32.8
Q ss_pred cceeeeeeeecceee--eeeccchhHHHHHhhhhhcCCCCCceEEEE
Q 040204 35 STLHSVRRFRGGMQI--FVESSDTIDNVKAKIQDKKGTPPDQQRQIF 79 (97)
Q Consensus 35 sti~l~i~~~~g~~i--~v~~~~TV~~lK~~I~~~~gip~~~q~Lif 79 (97)
.+-.+.+|.++|..+ ....++++.+|-.=+.. .|.+++...|+-
T Consensus 4 ~~t~i~vRlP~G~r~~rrF~~~~~L~~v~~fv~~-~g~~~~~f~L~t 49 (82)
T cd01773 4 PKARLMLRYPDGKREQIALPEQAKLLALVRHVQS-KGYPNERFELLT 49 (82)
T ss_pred CeeEEEEECCCCCEEEEEeCCCCcHHHHHHHHHh-cCCCCCCEEEec
Confidence 345678888888544 34778999999888887 577878887763
No 144
>cd01817 RGS12_RBD Ubiquitin domain of RGS12 and RGS14. RGS12 (regulator of G signalling 12), and RGS14, are members of a family of GTPase-activating proteins (GAP's) specific for the G-alpha subunit, which act as key inhibitors of G-protein-mediated cell responses in eukaryotes. Their domain architecture includes tandem RBD domains as well as PDZ , PTB, and RGS, and GoLoco domains.
Probab=58.00 E-value=30 Score=20.20 Aligned_cols=41 Identities=10% Similarity=0.088 Sum_probs=34.1
Q ss_pred eecc--eeeeeeccchhHHHHHhhhhhcCCCCCceEEEECeEe
Q 040204 43 FRGG--MQIFVESSDTIDNVKAKIQDKKGTPPDQQRQIFWFVF 83 (97)
Q Consensus 43 ~~~g--~~i~v~~~~TV~~lK~~I~~~~gip~~~q~Lif~G~~ 83 (97)
.++| ..+.+.|..||.++=.+..++-|++++.-.+...|..
T Consensus 6 LPdg~~T~V~vrpG~ti~d~L~kllekRgl~~~~~~vf~~g~~ 48 (73)
T cd01817 6 LPDGSTTVVPTRPGESIRDLLSGLCEKRGINYAAVDLFLVGGD 48 (73)
T ss_pred CCCCCeEEEEecCCCCHHHHHHHHHHHcCCChhHEEEEEecCC
Confidence 3444 3477899999999999999999999988888888864
No 145
>PF00788 RA: Ras association (RalGDS/AF-6) domain; InterPro: IPR000159 Proteins with this domain are mostly RasGTP effectors and include guanine-nucleotide releasing factor in mammals []. This factor stimulates the dissociation of GDP from the Ras-related RALA and RALB GTPases, which allows GTP binding and activation of the GTPases. It interacts and acts as an effector molecule for R-ras, K-Ras and Rap []. The domain is also present in a number of other proteins among them the sexual differentiation protein in yeast that is essential for mating and meiosis and yeast adenylate cyclase. These proteins contain repeated leucine-rich (LRR) segments.; GO: 0007165 signal transduction; PDB: 3EC8_A 2C5L_D 2BYF_A 2CS4_A 3KH0_A 2B3A_A 1RAX_A 2RGF_A 1WGR_A 1WXA_A ....
Probab=56.70 E-value=34 Score=19.54 Aligned_cols=32 Identities=28% Similarity=0.219 Sum_probs=27.0
Q ss_pred eeeeeeccchhHHHHHhhhhhcCC--CCCceEEE
Q 040204 47 MQIFVESSDTIDNVKAKIQDKKGT--PPDQQRQI 78 (97)
Q Consensus 47 ~~i~v~~~~TV~~lK~~I~~~~gi--p~~~q~Li 78 (97)
..|.|.+++|+.+|-..+.++.++ .++...|+
T Consensus 19 k~i~v~~~tTa~evi~~~l~k~~l~~~~~~y~L~ 52 (93)
T PF00788_consen 19 KTIKVSSSTTAREVIEMALEKFGLAEDPSDYCLV 52 (93)
T ss_dssp EEEEEETTSBHHHHHHHHHHHTTTSSSGGGEEEE
T ss_pred EEEEECCCCCHHHHHHHHHHHhCCCCCCCCEEEE
Confidence 457789999999999999999998 56677775
No 146
>PRK13011 formyltetrahydrofolate deformylase; Reviewed
Probab=56.28 E-value=12 Score=27.16 Aligned_cols=36 Identities=25% Similarity=0.165 Sum_probs=26.6
Q ss_pred ccceeeeeeee-cc-----eeeeeeccchhHHHHHhhhhhcC
Q 040204 34 GSTLHSVRRFR-GG-----MQIFVESSDTIDNVKAKIQDKKG 69 (97)
Q Consensus 34 ~sti~l~i~~~-~g-----~~i~v~~~~TV~~lK~~I~~~~g 69 (97)
|.|+|.+-.-. .| ..+.|.++||.++|.+++++.|.
T Consensus 219 G~TvH~v~~~~D~G~Ii~Q~~v~I~~~dt~~~L~~r~~~~E~ 260 (286)
T PRK13011 219 GATAHYVTDDLDEGPIIEQDVERVDHAYSPEDLVAKGRDVEC 260 (286)
T ss_pred EEEEEEEcCCCcCCCcEEEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 77888776543 33 13556999999999999988764
No 147
>cd01772 SAKS1_UBX SAKS1-like UBX domain. SAKS1 (SAPK-substrate-1), also known as Y33K, is a widely expressed protein containing N-terminal UBA (ubiquitin-associated) and C-terminal UBX (ubiqiutin-like) domains that was identified as a substrate of stress-activated protein kinases (SAPKs). SAKS1 is related evolutionarily to two other UBA/UBX-containing proteins, p47 and Faf1. The UBA and UBX domains of SAKS1 bind ubiquitin tetramers and valosin-containing protein (VCP), respectively suggesting a role for SAKS1 as an adaptor that directs VCP to polyubiquitinated proteins facilitating its destruction by the proteasome. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=55.54 E-value=38 Score=19.47 Aligned_cols=35 Identities=11% Similarity=0.223 Sum_probs=26.3
Q ss_pred cceeeeeeeecceee--eeeccchhHHHHHhhhhhcC
Q 040204 35 STLHSVRRFRGGMQI--FVESSDTIDNVKAKIQDKKG 69 (97)
Q Consensus 35 sti~l~i~~~~g~~i--~v~~~~TV~~lK~~I~~~~g 69 (97)
+...+.+++++|..+ ....++|+++|.+-|+...+
T Consensus 3 ~~~~i~iRlp~G~~~~~~F~~~~tl~~v~~fV~~~~~ 39 (79)
T cd01772 3 TETRIQIRLLDGTTLKQTFKAREQLAAVRLFVELNTG 39 (79)
T ss_pred cEEEEEEECCCCCEEEEEeCCCChHHHHHHHHHHcCC
Confidence 345678888888544 34889999999999986543
No 148
>PF05370 DUF749: Domain of unknown function (DUF749); InterPro: IPR008032 This is a family of unknown function found in archaebacterial proteins. The family has been solved via structural genomics techniques and comprises of segregated helical and anti-parallel beta sheet regions. It is a putative metal-binding protein. ; PDB: 1IQS_A 1IQO_A.
Probab=52.31 E-value=16 Score=22.07 Aligned_cols=43 Identities=23% Similarity=0.472 Sum_probs=20.6
Q ss_pred CCEEeCCCCCCccceecccceeeeeeeecceeeeeeccchhHHHHHhhhhh
Q 040204 17 AGKRLEDGRTLVDYNIHGSTLHSVRRFRGGMQIFVESSDTIDNVKAKIQDK 67 (97)
Q Consensus 17 ~g~~L~d~~tL~~y~I~~sti~l~i~~~~g~~i~v~~~~TV~~lK~~I~~~ 67 (97)
.++.|.|+..++=.+|.|.+=+ .-+++++..+|+++|+.+++.
T Consensus 29 ekreL~~dd~vAIlnI~gTtSy--------~v~FLd~~~~ieeIk~eL~e~ 71 (87)
T PF05370_consen 29 EKRELKDDDEVAILNIQGTTSY--------QVFFLDSYNSIEEIKEELKEA 71 (87)
T ss_dssp TT---SS--EEEEEE-TTTT-E--------EEEE-S---S-HHHHHHHHHH
T ss_pred ccccCCCCCcEEEEEecCCceE--------EEEEEcCCCCHHHHHHHHHHc
Confidence 4566777777777776633221 124568899999999999875
No 149
>PRK13010 purU formyltetrahydrofolate deformylase; Reviewed
Probab=52.21 E-value=15 Score=26.77 Aligned_cols=36 Identities=28% Similarity=0.167 Sum_probs=26.9
Q ss_pred ccceeeeeeee-cc-----eeeeeeccchhHHHHHhhhhhcC
Q 040204 34 GSTLHSVRRFR-GG-----MQIFVESSDTIDNVKAKIQDKKG 69 (97)
Q Consensus 34 ~sti~l~i~~~-~g-----~~i~v~~~~TV~~lK~~I~~~~g 69 (97)
|.|+|.+-.-. .| ..+.|.++||.++|.+++++.|.
T Consensus 223 G~TvH~v~~~lD~GpII~Q~~v~V~~~dt~e~L~~r~~~~E~ 264 (289)
T PRK13010 223 GATAHFVTDDLDEGPIIEQDVERVDHSYSPEDLVAKGRDVEC 264 (289)
T ss_pred EEEEEEEcCCCCCCCceEEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 77888876543 33 23556999999999999988764
No 150
>PRK06437 hypothetical protein; Provisional
Probab=52.15 E-value=36 Score=19.05 Aligned_cols=37 Identities=16% Similarity=0.227 Sum_probs=22.8
Q ss_pred ccCCCCcceEEEECCEEeCCCCCCccceec-ccceeeeeeeec
Q 040204 4 KEEILRDQQRFIFAGKRLEDGRTLVDYNIH-GSTLHSVRRFRG 45 (97)
Q Consensus 4 ~~gip~~~Q~L~~~g~~L~d~~tL~~y~I~-~sti~l~i~~~~ 45 (97)
..|++++.--+..||..+. .++.++ ++++.++.-..|
T Consensus 29 ~Lgi~~~~vaV~vNg~iv~-----~~~~L~dgD~Veiv~~V~G 66 (67)
T PRK06437 29 DLGLDEEEYVVIVNGSPVL-----EDHNVKKEDDVLILEVFSG 66 (67)
T ss_pred HcCCCCccEEEEECCEECC-----CceEcCCCCEEEEEecccC
Confidence 3466666666666777776 455666 777766554433
No 151
>KOG3391 consensus Transcriptional co-repressor component [Transcription]
Probab=52.12 E-value=8.2 Score=25.38 Aligned_cols=29 Identities=21% Similarity=0.266 Sum_probs=23.5
Q ss_pred CCEEeCCCCCCccceec-ccceeeeeeeec
Q 040204 17 AGKRLEDGRTLVDYNIH-GSTLHSVRRFRG 45 (97)
Q Consensus 17 ~g~~L~d~~tL~~y~I~-~sti~l~i~~~~ 45 (97)
|-|..+|++||...+++ |+.+.+.++.++
T Consensus 110 g~Kg~ddnktL~~~kf~iGD~lDVaI~~p~ 139 (151)
T KOG3391|consen 110 GRKGIDDNKTLQQTKFEIGDYLDVAITPPN 139 (151)
T ss_pred CcccCCccchhhhCCccccceEEEEecCcc
Confidence 33446889999999999 999999887654
No 152
>TIGR00655 PurU formyltetrahydrofolate deformylase. This model describes formyltetrahydrofolate deformylases. The enzyme is a homohexamer. Sequences from a related enzyme formyl tetrahydrofolate-specific enzyme, phosphoribosylglycinamide formyltransferase, serve as an outgroup for phylogenetic analysis. Putative members of this family, scoring below the trusted cutoff, include a sequence from Rhodobacter capsulatus that lacks an otherwise conserved C-terminal region.
Probab=51.57 E-value=14 Score=26.80 Aligned_cols=36 Identities=22% Similarity=0.295 Sum_probs=27.0
Q ss_pred ccceeeeeeeec-c-----eeeeeeccchhHHHHHhhhhhcC
Q 040204 34 GSTLHSVRRFRG-G-----MQIFVESSDTIDNVKAKIQDKKG 69 (97)
Q Consensus 34 ~sti~l~i~~~~-g-----~~i~v~~~~TV~~lK~~I~~~~g 69 (97)
|.|+|.+-.-.+ | ..+.|.++||.++|.+++++.|.
T Consensus 214 G~TvH~V~e~lD~GpII~Q~~v~I~~~dt~~~L~~ri~~~E~ 255 (280)
T TIGR00655 214 GATAHYVTEELDEGPIIEQDVVRVDHTDNVEDLIRAGRDIEK 255 (280)
T ss_pred EEEEEEEcCCCcCCCeEEEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 778888776433 3 13556899999999999988764
No 153
>KOG2561 consensus Adaptor protein NUB1, contains UBA domain [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=51.54 E-value=5.1 Score=31.36 Aligned_cols=42 Identities=24% Similarity=0.285 Sum_probs=33.1
Q ss_pred CccccCCCCcceEEEECCEEeCCCCCCccceec-ccceeeeee
Q 040204 1 IEDKEEILRDQQRFIFAGKRLEDGRTLVDYNIH-GSTLHSVRR 42 (97)
Q Consensus 1 i~~~~gip~~~Q~L~~~g~~L~d~~tL~~y~I~-~sti~l~i~ 42 (97)
|+++.||+.+.-+.+-+||.|+-.+|+++-|.+ +....+.+.
T Consensus 69 iakklgi~enhvKci~~~Kils~~ktlaeQglk~nq~~mv~~~ 111 (568)
T KOG2561|consen 69 IAKKLGIKENHVKCIINGKILSCRKTLAEQGLKINQELMVAVG 111 (568)
T ss_pred HHHHcCCchhhhheeeccceeecccchhhhhhhhhhHHHHHhc
Confidence 356778888888888899999999999999988 776655443
No 154
>KOG0007 consensus Splicing factor 3a, subunit 1 [RNA processing and modification]
Probab=50.73 E-value=5.2 Score=29.66 Aligned_cols=31 Identities=26% Similarity=0.311 Sum_probs=29.1
Q ss_pred ccchhHHHHHhhhhhcCCCCCceEEEECeEe
Q 040204 53 SSDTIDNVKAKIQDKKGTPPDQQRQIFWFVF 83 (97)
Q Consensus 53 ~~~TV~~lK~~I~~~~gip~~~q~Lif~G~~ 83 (97)
.++.|..+|.++.+..+|+++.|.+.|.|..
T Consensus 302 ~~~~~~~~k~k~~~~~~i~~~~q~~~~~~~~ 332 (341)
T KOG0007|consen 302 LSENVASLKEKIADESQIPANKQKLRGEGAF 332 (341)
T ss_pred ccccccccccccccccccchhheeeccCCcc
Confidence 6788999999999999999999999999887
No 155
>COG4009 Uncharacterized protein conserved in archaea [Function unknown]
Probab=50.38 E-value=31 Score=20.63 Aligned_cols=41 Identities=27% Similarity=0.455 Sum_probs=29.4
Q ss_pred CCEEeCCCCCCccceec-ccceeeeeeeecceeeeeeccchhHHHHHhhhh
Q 040204 17 AGKRLEDGRTLVDYNIH-GSTLHSVRRFRGGMQIFVESSDTIDNVKAKIQD 66 (97)
Q Consensus 17 ~g~~L~d~~tL~~y~I~-~sti~l~i~~~~g~~i~v~~~~TV~~lK~~I~~ 66 (97)
.++.|.|+..++=++|. -+.-++ ++++...++++++...++
T Consensus 30 ~k~~L~dDde~aIfnI~gT~Sy~V---------~Fl~~~~s~eev~~ele~ 71 (88)
T COG4009 30 AKVDLNDDDELAIFNIEGTSSYYV---------VFLEEVESEEEVERELED 71 (88)
T ss_pred cccccCCCCcEEEEEecCceeEEE---------EEEeccCCHHHHHHHHHH
Confidence 56778888888888777 333332 456788899999998844
No 156
>cd01818 TIAM1_RBD Ubiquitin domain of Tiam1 guanine nucleotide exchange factor. Tiam1 (T lymphoma invasion and metastasis 1) a guanine nucleotide exchange factor that activates Rac, is an important regulator of Rho GTPase functions in tumor cells including regulation of cell shape and invasiveness in epithelial cells and fibroblasts. TIAM1 has an RBD (Ras-binding domain) similar to that of Raf kinase as well as PH (pleckstrin homology), PDZ, and RhoGEF domains.
Probab=49.14 E-value=34 Score=20.17 Aligned_cols=34 Identities=6% Similarity=0.125 Sum_probs=28.1
Q ss_pred eeeeeeccchhHHHHHhhhhhcCCCCCceEEEEC
Q 040204 47 MQIFVESSDTIDNVKAKIQDKKGTPPDQQRQIFW 80 (97)
Q Consensus 47 ~~i~v~~~~TV~~lK~~I~~~~gip~~~q~Lif~ 80 (97)
..+.|+|++||.++-+....+.++.|+...|--.
T Consensus 12 ~~v~vrp~~tv~dvLe~aCk~~~ldp~eh~Lrlk 45 (77)
T cd01818 12 VLTYLRPGMSVEDFLESACKRKQLDPMEHYLRLK 45 (77)
T ss_pred EEEEECCCCCHHHHHHHHHHhcCCChhHheeEEE
Confidence 4567799999999999999999998877665443
No 157
>cd06411 PB1_p51 The PB1 domain is present in the p51 protein, a homolog of the p67 protein. p51 plays an important role in NADPH oxidase activation during phagosytosis. The PB1 domain is a modular domain mediating specific protein-protein interaction in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain mo
Probab=48.86 E-value=55 Score=19.32 Aligned_cols=36 Identities=3% Similarity=0.014 Sum_probs=31.7
Q ss_pred eeeeccchhHHHHHhhhhhcCCCCCceEEEECeEeC
Q 040204 49 IFVESSDTIDNVKAKIQDKKGTPPDQQRQIFWFVFG 84 (97)
Q Consensus 49 i~v~~~~TV~~lK~~I~~~~gip~~~q~Lif~G~~~ 84 (97)
+.+.+..+..+|.++|.++-..+++.-.|.|.-..+
T Consensus 11 i~v~~g~~y~~L~~~ls~kL~l~~~~~~LSY~~~~~ 46 (78)
T cd06411 11 LRAPRGADVSSLRALLSQALPQQAQRGQLSYRAPGE 46 (78)
T ss_pred EEccCCCCHHHHHHHHHHHhcCChhhcEEEecCCCC
Confidence 445788899999999999999999999999987763
No 158
>cd01768 RA RA (Ras-associating) ubiquitin domain. The RA (Ras-associating) domain is structurally similar to ubiquitin and is present in one or two copies in a number of signalling molecules that bind and regulate a small GTPase called Ras or the Ras-related GTPases, Ral and Rap. RA-containing proteins include RalGDS, AF6, RIN1, RASSF1, SNX27, CYR1, STE50, and phospholipase C epsilon.
Probab=48.16 E-value=52 Score=18.83 Aligned_cols=32 Identities=19% Similarity=0.277 Sum_probs=26.5
Q ss_pred eeeeeeccchhHHHHHhhhhhcCCC--CCceEEE
Q 040204 47 MQIFVESSDTIDNVKAKIQDKKGTP--PDQQRQI 78 (97)
Q Consensus 47 ~~i~v~~~~TV~~lK~~I~~~~gip--~~~q~Li 78 (97)
..|.|.+++|..+|-....++.++. ++...|+
T Consensus 15 kti~V~~~~t~~~Vi~~~l~k~~l~~~~~~y~L~ 48 (87)
T cd01768 15 KTLRVSKDTTAQDVIQQLLKKFGLDDDPEDYALV 48 (87)
T ss_pred EEEEECCCCCHHHHHHHHHHHhCCcCCcccEEEE
Confidence 5688899999999999999999876 5555554
No 159
>PF08337 Plexin_cytopl: Plexin cytoplasmic RasGAP domain; InterPro: IPR013548 This domain is found at C terminus of various plexins (e.g. P51805 from SWISSPROT). Plexins are receptors for semaphorins, and plexin signalling is important in pathfinding and patterning of both neurons and developing blood vessels [, ]. The cytoplasmic region, which has been called a SEX domain [], and is involved in downstream signalling pathways, by interaction with proteins such as Rac1, RhoD, Rnd1 and other plexins []. ; PDB: 3H6N_A 4E71_A 4E74_A 3IG3_A 2REX_C 2JPH_A 2R2O_A 3HM6_X 3SU8_X 3SUA_E ....
Probab=46.20 E-value=43 Score=26.72 Aligned_cols=58 Identities=31% Similarity=0.334 Sum_probs=32.4
Q ss_pred eCCCCCCccceecccceeeeeeeec----ceeeeeeccchhHHHHHhhhhh--cCCC------CCceEEEE
Q 040204 21 LEDGRTLVDYNIHGSTLHSVRRFRG----GMQIFVESSDTIDNVKAKIQDK--KGTP------PDQQRQIF 79 (97)
Q Consensus 21 L~d~~tL~~y~I~~sti~l~i~~~~----g~~i~v~~~~TV~~lK~~I~~~--~gip------~~~q~Lif 79 (97)
|.+++.|.+ .|...++.+.+-..+ .+.+.|-..|||..+|+||-+. .+.| +++..|-|
T Consensus 175 LnE~~LLre-~id~~~ltl~v~~~~~~~~~i~VkVLdCDTItQVKeKiLDavyk~~p~S~rp~~~d~dLEw 244 (539)
T PF08337_consen 175 LNEDKLLRE-QIDYKTLTLNVVPQEEGSEEIPVKVLDCDTITQVKEKILDAVYKNTPYSQRPRADDVDLEW 244 (539)
T ss_dssp SSCCCB--S-SS-S-EEEEEEECTTTSSTCEEEEEETTSBHHHHHHHHHHHHTTTS-GGGS--GGGEEEEE
T ss_pred echhhhhcc-ccceEEEEEEEEecCCCCceEEEEEEecCcccHHHHHHHHHHHcCCCCCCCCCccccceee
Confidence 444444444 344334444433322 1567778899999999999877 3555 45556654
No 160
>smart00314 RA Ras association (RalGDS/AF-6) domain. RasGTP effectors (in cases of AF6, canoe and RalGDS); putative RasGTP effectors in other cases. Kalhammer et al. have shown that not all RA domains bind RasGTP. Predicted structure similar to that determined, and that of the RasGTP-binding domain of Raf kinase. Predicted RA domains in PLC210 and nore1 found to bind RasGTP. Included outliers (Grb7, Grb14, adenylyl cyclases etc.)
Probab=43.71 E-value=64 Score=18.60 Aligned_cols=32 Identities=16% Similarity=0.134 Sum_probs=26.1
Q ss_pred eeeeeeccchhHHHHHhhhhhcCCCC--CceEEE
Q 040204 47 MQIFVESSDTIDNVKAKIQDKKGTPP--DQQRQI 78 (97)
Q Consensus 47 ~~i~v~~~~TV~~lK~~I~~~~gip~--~~q~Li 78 (97)
..|.|.+++|+.++-..+.++.+++. +...|+
T Consensus 18 kti~v~~~tTa~~Vi~~~l~k~~l~~~~~~y~L~ 51 (90)
T smart00314 18 KTLRVSSRTTARDVIQQLLEKFHLTDDPEEYVLV 51 (90)
T ss_pred EEEEECCCCCHHHHHHHHHHHhCCCCCcccEEEE
Confidence 56788999999999999999999864 455554
No 161
>PF12754 Blt1: Cell-cycle control medial ring component; InterPro: IPR024737 During size-dependent cell cycle transitions controlled by the ubiquitous cyclin-dependent kinase Cdk1, Blt1 has been shown to co-localise with Cdr2 in the medial interphase nodes, as well as with Mid1 which was previously shown to localise to similar interphase structures. Physical interactions between Blt1-Mid1, Blt1-Cdr2 and Cdr2-Mid1 were detected, indicating that medial cortical nodes are formed by the ordered, Cdr2-dependent assembly of multiple interacting proteins during interphase[].; PDB: 2LO0_A.
Probab=43.39 E-value=7.8 Score=28.64 Aligned_cols=30 Identities=13% Similarity=0.299 Sum_probs=0.0
Q ss_pred cchhHHHHHhhhh----------hcCCCCCceE-----EEECeEe
Q 040204 54 SDTIDNVKAKIQD----------KKGTPPDQQR-----QIFWFVF 83 (97)
Q Consensus 54 ~~TV~~lK~~I~~----------~~gip~~~q~-----Lif~G~~ 83 (97)
+.||.++|..+++ .+++|.+..+ |.|+-+-
T Consensus 103 ttSv~dlk~~v~~rv~~~~~~~~~~~vp~dKik~~~~~lL~~kkP 147 (309)
T PF12754_consen 103 TTSVQDLKDAVQQRVHPSQATYDETRVPLDKIKNFRCRLLYKKKP 147 (309)
T ss_dssp ---------------------------------------------
T ss_pred cCcHHHHHHHHHhhhcccccccccccCCHHHhhhhhhhheecCcc
Confidence 7899999999999 8999999999 9998776
No 162
>cd01776 Rin1_RA Ubiquitin domain of RIN1 RAS effector. Rin1_RA RIN1 is a RAS effector that binds with specificity and high affinity to activated RAS via its carboxy-terminal RA (RAS-associated) domain. RIN1 competes directly with RAF1 for RAS binding and is thought to divert signaling away from RAF and the MAPK pathway while also shunting RAS signals through alternate pathways. In addition, Rin1 and Rin2 are Rab5-binding proteins, binding preferentially to the GTP-bound form, that enhance the GDP-GTP exchange reaction on Rab5 that regulate the docking and fusion processes of endocytic vesicles. In addition to the RA domain, RIN1 and RIN2 have an SH2 (Src homology 2) domain, a proline-rich SH3 domain, and a Vps9 domain.
Probab=42.40 E-value=46 Score=20.02 Aligned_cols=33 Identities=15% Similarity=0.189 Sum_probs=27.9
Q ss_pred eeeeeeccchhHHHHHhhhhhcCC-CCCceEEEE
Q 040204 47 MQIFVESSDTIDNVKAKIQDKKGT-PPDQQRQIF 79 (97)
Q Consensus 47 ~~i~v~~~~TV~~lK~~I~~~~gi-p~~~q~Lif 79 (97)
.++.|.|..|+++|=.++.++..+ .|++..|..
T Consensus 16 KTL~V~P~~tt~~vc~lcA~Kf~V~qPe~y~LFl 49 (87)
T cd01776 16 KTLLVRPYITTEDVCQLCAEKFKVTQPEEYSLFL 49 (87)
T ss_pred eeeecCCCCcHHHHHHHHHHHhccCChhheeEEE
Confidence 568899999999999999999886 577777754
No 163
>cd01770 p47_UBX p47-like ubiquitin domain. p47_UBX p47 is an adaptor molecule of the cytosolic AAA ATPase p97. The principal role of the p97-p47 complex is to regulate membrane fusion events. Mono-ubiquitin recognition by p47 is crucial for p97-p47-mediated Golgi membrane fusion events. p47 has carboxy-terminal SEP and UBX domains. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=42.04 E-value=69 Score=18.51 Aligned_cols=43 Identities=16% Similarity=0.196 Sum_probs=29.4
Q ss_pred ceeeeeeeecceee--eeeccchhHHHHHhhhhhcCC-CCCceEEE
Q 040204 36 TLHSVRRFRGGMQI--FVESSDTIDNVKAKIQDKKGT-PPDQQRQI 78 (97)
Q Consensus 36 ti~l~i~~~~g~~i--~v~~~~TV~~lK~~I~~~~gi-p~~~q~Li 78 (97)
+..+.+|+++|..+ ....++||.+|.+-|....+- ......|+
T Consensus 4 ~t~iqiRlpdG~r~~~rF~~~~tv~~l~~~v~~~~~~~~~~~f~L~ 49 (79)
T cd01770 4 TTSIQIRLADGKRLVQKFNSSHRVSDVRDFIVNARPEFAARPFTLM 49 (79)
T ss_pred eeEEEEECCCCCEEEEEeCCCCcHHHHHHHHHHhCCCCCCCCEEEe
Confidence 44577888888443 458899999999999875432 23445554
No 164
>PF14453 ThiS-like: ThiS-like ubiquitin
Probab=40.70 E-value=47 Score=18.38 Aligned_cols=33 Identities=15% Similarity=0.060 Sum_probs=20.6
Q ss_pred cceeeeeeccchhHHHHHhhhhhcCCCCCceEEEECeEe
Q 040204 45 GGMQIFVESSDTIDNVKAKIQDKKGTPPDQQRQIFWFVF 83 (97)
Q Consensus 45 ~g~~i~v~~~~TV~~lK~~I~~~~gip~~~q~Lif~G~~ 83 (97)
+|..+.++.+.|...+|.++.. +.-.+||+|=+
T Consensus 6 N~k~~~~~~~~tl~~lr~~~k~------~~DI~I~NGF~ 38 (57)
T PF14453_consen 6 NEKEIETEENTTLFELRKESKP------DADIVILNGFP 38 (57)
T ss_pred CCEEEEcCCCcCHHHHHHhhCC------CCCEEEEcCcc
Confidence 3445666777788888887765 22255666643
No 165
>PF07494 Reg_prop: Two component regulator propeller; InterPro: IPR011110 A large group of two component regulator proteins appear to have the same N-terminal structure of 14 tandem repeats. These repeats show homology to members of IPR002372 from INTERPRO and IPR001680 from INTERPRO indicating that they are likely to form a beta-propeller. This family has been built with artificially high cut-offs in order to avoid overlaps with other beta-propeller families. The fourteen repeats are likely to form two propellers; it is not clear if these structures are likely to recruit other proteins or interact with DNA.; PDB: 3V9F_D 3VA6_B 3OTT_B 4A2M_D 4A2L_B.
Probab=39.61 E-value=19 Score=15.95 Aligned_cols=19 Identities=26% Similarity=0.489 Sum_probs=12.3
Q ss_pred CCCCceEEEECeEeCCCccce
Q 040204 70 TPPDQQRQIFWFVFGWGSLWM 90 (97)
Q Consensus 70 ip~~~q~Lif~G~~~~~~~~~ 90 (97)
+|-+.-.=+|..+. |.||.
T Consensus 2 L~~n~I~~i~~D~~--G~lWi 20 (24)
T PF07494_consen 2 LPNNNIYSIYEDSD--GNLWI 20 (24)
T ss_dssp BSSSCEEEEEE-TT--SCEEE
T ss_pred CCCCeEEEEEEcCC--cCEEE
Confidence 45555666777777 88886
No 166
>PLN02828 formyltetrahydrofolate deformylase
Probab=39.18 E-value=27 Score=25.21 Aligned_cols=39 Identities=23% Similarity=0.260 Sum_probs=28.1
Q ss_pred eec--ccceeeeeeee-cc-----eeeeeeccchhHHHHHhhhhhcC
Q 040204 31 NIH--GSTLHSVRRFR-GG-----MQIFVESSDTIDNVKAKIQDKKG 69 (97)
Q Consensus 31 ~I~--~sti~l~i~~~-~g-----~~i~v~~~~TV~~lK~~I~~~~g 69 (97)
|.+ |+|+|.+..-. .| ..+.|.+++|+++|.+++.+.|.
T Consensus 196 Gvk~tG~TvH~V~~~lD~GpII~Q~~v~V~~~dt~~~L~~r~~~~E~ 242 (268)
T PLN02828 196 GVKLIGATSHFVTEELDAGPIIEQMVERVSHRDNLRSFVQKSENLEK 242 (268)
T ss_pred CCCeEEEEEEEEcCCCCCCCeeEEEEEecCCCCCHHHHHHHHHHHHH
Confidence 554 78888876543 33 12456999999999999987764
No 167
>cd01777 SNX27_RA Ubiquitin domain of SNX27 (sorting nexin protein 27). SNX27_RA SNX27 (sorting nexin protein 27) belongs to a large family of endosome-localized proteins related to sorting nexin1 which is implicated in regulating membrane traffic. The domain architecture of SNX27 includes an amino-terminal PDZ domain, a PX (PhoX homologous) domain, and a carboxy-terminal RA (RAS-associated) domain.
Probab=38.26 E-value=66 Score=19.39 Aligned_cols=38 Identities=18% Similarity=0.149 Sum_probs=28.8
Q ss_pred eeeeeeecc--eeeeeeccchhHHHHHhhhhhcCCCCCce
Q 040204 38 HSVRRFRGG--MQIFVESSDTIDNVKAKIQDKKGTPPDQQ 75 (97)
Q Consensus 38 ~l~i~~~~g--~~i~v~~~~TV~~lK~~I~~~~gip~~~q 75 (97)
.+.+-.++| +.+.+..+++..++=+.+..+-|+|.+-+
T Consensus 3 ~L~V~Lpdg~~i~V~v~~s~~a~~Vleav~~kl~L~~e~~ 42 (87)
T cd01777 3 ELRIALPDKATVTVRVRKNATTDQVYQALVAKAGMDSYTQ 42 (87)
T ss_pred EEEEEccCCCEEEEEEEEcccHHHHHHHHHHHhCCCHHHH
Confidence 344555556 45666889999999999999999997654
No 168
>PF14836 Ubiquitin_3: Ubiquitin-like domain; PDB: 3JYU_A 4A3O_B 3PPA_A 3T9L_A 4A3P_A 3PV1_A.
Probab=37.11 E-value=74 Score=19.18 Aligned_cols=29 Identities=17% Similarity=0.177 Sum_probs=21.3
Q ss_pred eeeeccchhHHHHHhhhhhcCCCCCceEEE
Q 040204 49 IFVESSDTIDNVKAKIQDKKGTPPDQQRQI 78 (97)
Q Consensus 49 i~v~~~~TV~~lK~~I~~~~gip~~~q~Li 78 (97)
......|||..++..+.+...| ...-||=
T Consensus 18 ~~FSk~DTI~~v~~~~rklf~i-~~E~RLW 46 (88)
T PF14836_consen 18 KQFSKTDTIGFVEKEMRKLFNI-QEETRLW 46 (88)
T ss_dssp EEE-TTSBHHHHHHHHHHHCT--TS-EEEE
T ss_pred hhccccChHHHHHHHHHHHhCC-Cccceeh
Confidence 3448899999999999999999 5566763
No 169
>PTZ00380 microtubule-associated protein (MAP); Provisional
Probab=37.04 E-value=48 Score=21.22 Aligned_cols=45 Identities=11% Similarity=0.169 Sum_probs=31.8
Q ss_pred cceeeeeeeec----ceee-eeeccchhHHHHHhhhhhcCCCCCceEEEEC
Q 040204 35 STLHSVRRFRG----GMQI-FVESSDTIDNVKAKIQDKKGTPPDQQRQIFW 80 (97)
Q Consensus 35 sti~l~i~~~~----g~~i-~v~~~~TV~~lK~~I~~~~gip~~~q~Lif~ 80 (97)
..|-|++...+ .... .|..+.||+++...|+.+.++++++ ..+|=
T Consensus 26 drIPVIvEk~~~s~dK~KfllVP~d~tV~qF~~iIRkrl~l~~~k-~flfV 75 (121)
T PTZ00380 26 GHVAVVVEAAEKAGSKVHFLALPRDATVAELEAAVRQALGTSAKK-VTLAI 75 (121)
T ss_pred CccEEEEeecCCCCCceEEEEcCCCCcHHHHHHHHHHHcCCChhH-EEEEE
Confidence 34555553322 2344 4899999999999999999999988 44443
No 170
>cd01816 Raf_RBD Ubiquitin domain of Raf serine/threonine kinases. The Raf serine/threonine kinases are composed of three conserved regions, CR1, CR2 and CR3. CR1 has two Ras binding domains (RBD and CRD), CR2 is a serine/threonine rich domain and CR3 is the catalytic kinase domain. The RBD of Raf is structurally similar to ubiquitin with little of no sequence similarity.The Raf signalling pathway plays an important role in the proliferation and survival of tumor cells.
Probab=37.01 E-value=81 Score=18.46 Aligned_cols=34 Identities=21% Similarity=0.291 Sum_probs=29.0
Q ss_pred eeeeeeccchhHHHHHhhhhhcCCCCCceEEEECe
Q 040204 47 MQIFVESSDTIDNVKAKIQDKKGTPPDQQRQIFWF 81 (97)
Q Consensus 47 ~~i~v~~~~TV~~lK~~I~~~~gip~~~q~Lif~G 81 (97)
..+.|.|..|+.+.-.+.-..-|+.| +++.+|..
T Consensus 12 T~V~vrpG~tl~daL~KaLk~R~l~p-e~C~V~~~ 45 (74)
T cd01816 12 TVVNVRPGMTLRDALAKALKVRGLQP-ECCAVFRL 45 (74)
T ss_pred EEEEecCCcCHHHHHHHHHHHcCCCh-hHeEEEEc
Confidence 45788999999999999999999987 67888866
No 171
>PF12518 DUF3721: Protein of unknown function; InterPro: IPR022196 This domain family is found in bacteria and eukaryotes, and is approximately 30 amino acids in length. There is a conserved WMPC sequence motif. There are two completely conserved residues (A and C) that may be functionally important.
Probab=36.94 E-value=13 Score=18.52 Aligned_cols=7 Identities=57% Similarity=1.407 Sum_probs=5.6
Q ss_pred Cccceec
Q 040204 86 GSLWMPL 92 (97)
Q Consensus 86 ~~~~~~~ 92 (97)
|+.|||-
T Consensus 23 g~~WMPC 29 (34)
T PF12518_consen 23 GDKWMPC 29 (34)
T ss_pred cCccccC
Confidence 7889983
No 172
>PRK06027 purU formyltetrahydrofolate deformylase; Reviewed
Probab=36.85 E-value=36 Score=24.65 Aligned_cols=36 Identities=28% Similarity=0.254 Sum_probs=26.3
Q ss_pred ccceeeeeeee-cc-----eeeeeeccchhHHHHHhhhhhcC
Q 040204 34 GSTLHSVRRFR-GG-----MQIFVESSDTIDNVKAKIQDKKG 69 (97)
Q Consensus 34 ~sti~l~i~~~-~g-----~~i~v~~~~TV~~lK~~I~~~~g 69 (97)
|.|+|.+-.-. .| ..+.|.++||.++|.+++.+.|.
T Consensus 219 G~TiH~v~~~~D~G~Ii~Q~~v~i~~~dt~~~L~~ri~~~E~ 260 (286)
T PRK06027 219 GATAHYVTADLDEGPIIEQDVIRVDHRDTAEDLVRAGRDVEK 260 (286)
T ss_pred EEEEEEEcCCCcCCCcEEEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 77888776543 33 23556899999999999987763
No 173
>PF13180 PDZ_2: PDZ domain; PDB: 2L97_A 1Y8T_A 2Z9I_A 1LCY_A 2PZD_B 2P3W_A 1VCW_C 1TE0_B 1SOZ_C 1SOT_C ....
Probab=36.59 E-value=27 Score=19.78 Aligned_cols=43 Identities=19% Similarity=0.216 Sum_probs=28.9
Q ss_pred cccCCCCcceEEEECCEEeCCCCCCccc--eec-ccceeeeeeeec
Q 040204 3 DKEEILRDQQRFIFAGKRLEDGRTLVDY--NIH-GSTLHSVRRFRG 45 (97)
Q Consensus 3 ~~~gip~~~Q~L~~~g~~L~d~~tL~~y--~I~-~sti~l~i~~~~ 45 (97)
++.|+.+.+..+..+|+++.+...+..+ ... ++++.+.+...+
T Consensus 28 ~~aGl~~GD~I~~ing~~v~~~~~~~~~l~~~~~g~~v~l~v~R~g 73 (82)
T PF13180_consen 28 AKAGLQPGDIILAINGKPVNSSEDLVNILSKGKPGDTVTLTVLRDG 73 (82)
T ss_dssp HHTTS-TTEEEEEETTEESSSHHHHHHHHHCSSTTSEEEEEEEETT
T ss_pred HHCCCCCCcEEEEECCEEcCCHHHHHHHHHhCCCCCEEEEEEEECC
Confidence 3467888888888999998766555544 234 777777775543
No 174
>PF08825 E2_bind: E2 binding domain; InterPro: IPR014929 E1 and E2 enzymes play a central role in ubiquitin and ubiquitin-like protein transfer cascades. This is an E2 binding domain that is found on NEDD8 activating E1 enzyme. The protein resembles ubiquitin, and recruits the catalytic core of the E2 enzyme Ubc12 in a similar manner to that in which ubiquitin interacts with ubiquitin binding domains []. ; GO: 0005524 ATP binding, 0016881 acid-amino acid ligase activity, 0045116 protein neddylation; PDB: 3GZN_D 3DBL_F 1R4N_H 1R4M_D 2NVU_B 1TT5_D 3DBR_D 3DBH_H 1YOV_B 3FN1_A ....
Probab=35.55 E-value=71 Score=18.91 Aligned_cols=38 Identities=18% Similarity=0.112 Sum_probs=25.2
Q ss_pred eeeeccchhHHHHHhhhhhcCCCCCceEEEECeEeCCCccce
Q 040204 49 IFVESSDTIDNVKAKIQDKKGTPPDQQRQIFWFVFGWGSLWM 90 (97)
Q Consensus 49 i~v~~~~TV~~lK~~I~~~~gip~~~q~Lif~G~~~~~~~~~ 90 (97)
|.++++.|..++-+.+.++..+....=.|..+| ++|+|
T Consensus 1 i~v~~~~TL~~lid~L~~~~~~qlk~PSlt~~~----k~LYm 38 (84)
T PF08825_consen 1 IEVSPSWTLQDLIDSLCEKPEFQLKKPSLTTAN----KTLYM 38 (84)
T ss_dssp EEESTTSBSHHHHHHHHHSTTT--SS-EEESSE----EEEEE
T ss_pred CCcCccchHHHHHHHHHhChhhhcCCCcccCCC----ceEEE
Confidence 456889999999999998866665555555444 34666
No 175
>PF12754 Blt1: Cell-cycle control medial ring component; InterPro: IPR024737 During size-dependent cell cycle transitions controlled by the ubiquitous cyclin-dependent kinase Cdk1, Blt1 has been shown to co-localise with Cdr2 in the medial interphase nodes, as well as with Mid1 which was previously shown to localise to similar interphase structures. Physical interactions between Blt1-Mid1, Blt1-Cdr2 and Cdr2-Mid1 were detected, indicating that medial cortical nodes are formed by the ordered, Cdr2-dependent assembly of multiple interacting proteins during interphase[].; PDB: 2LO0_A.
Probab=35.31 E-value=13 Score=27.60 Aligned_cols=43 Identities=19% Similarity=0.323 Sum_probs=0.0
Q ss_pred ccCCCCcceE-----EEECCEEeCCCCCCccceec--------ccceeeeeeeecc
Q 040204 4 KEEILRDQQR-----FIFAGKRLEDGRTLVDYNIH--------GSTLHSVRRFRGG 46 (97)
Q Consensus 4 ~~gip~~~Q~-----L~~~g~~L~d~~tL~~y~I~--------~sti~l~i~~~~g 46 (97)
++++|.+..+ |.|+-|++.|.+||.+..-. +.++.+.+...||
T Consensus 126 ~~~vp~dKik~~~~~lL~~kkPv~~~ktl~e~l~~~~~~l~~~~~~vE~gvMVlGG 181 (309)
T PF12754_consen 126 ETRVPLDKIKNFRCRLLYKKKPVGDSKTLAEVLADSESRLLSGGKEVEFGVMVLGG 181 (309)
T ss_dssp --------------------------------------------------------
T ss_pred cccCCHHHhhhhhhhheecCccCCCcCcHHHHHhcccchhccCCceEEEEEEEECC
Confidence 7889998888 99999999999998876322 4566666666666
No 176
>PRK02289 4-oxalocrotonate tautomerase; Provisional
Probab=35.23 E-value=72 Score=17.14 Aligned_cols=25 Identities=8% Similarity=0.017 Sum_probs=19.3
Q ss_pred HHHHhhhhhcCCCCCceEEEECeEe
Q 040204 59 NVKAKIQDKKGTPPDQQRQIFWFVF 83 (97)
Q Consensus 59 ~lK~~I~~~~gip~~~q~Lif~G~~ 83 (97)
.+-+-+.+..|+|++.-.+++....
T Consensus 23 ~it~a~~~~~~~p~~~v~V~i~ev~ 47 (60)
T PRK02289 23 EVTEVVSRIAKAPKEAIHVFINDMP 47 (60)
T ss_pred HHHHHHHHHhCcCcceEEEEEEEeC
Confidence 4445556667999999999998877
No 177
>PF02192 PI3K_p85B: PI3-kinase family, p85-binding domain; InterPro: IPR003113 This is the region of the p110 phosphatidylinositol 3-kinase (PI3-Kinase) that binds the p85 subunit.; GO: 0046934 phosphatidylinositol-4,5-bisphosphate 3-kinase activity, 0007165 signal transduction, 0005942 phosphatidylinositol 3-kinase complex; PDB: 3HIZ_A 3HHM_A 2RD0_A 4A55_A 2Y3A_A 2V1Y_A.
Probab=34.82 E-value=57 Score=19.14 Aligned_cols=24 Identities=21% Similarity=0.443 Sum_probs=17.0
Q ss_pred eeeeeccchhHHHHHhh-hhhcCCC
Q 040204 48 QIFVESSDTIDNVKAKI-QDKKGTP 71 (97)
Q Consensus 48 ~i~v~~~~TV~~lK~~I-~~~~gip 71 (97)
++.+..+.|+.++|+.+ +++...|
T Consensus 3 ~l~~~~~~Tl~~iK~~lw~~A~~~P 27 (78)
T PF02192_consen 3 PLRVSRDATLSEIKEELWEEAKKYP 27 (78)
T ss_dssp EEEEETT-BHHHHHHHHHHHGGGST
T ss_pred EEEccCcCcHHHHHHHHHHHHHhCC
Confidence 46678899999999988 4444444
No 178
>cd06410 PB1_UP2 Uncharacterized protein 2. The PB1 domain is a modular domain mediating specific protein-protein interaction which play a role in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions.
Probab=34.67 E-value=1.1e+02 Score=18.61 Aligned_cols=38 Identities=18% Similarity=0.252 Sum_probs=27.7
Q ss_pred eeecc--eeeeeeccchhHHHHHhhhhhcCCCCCceEEEEC
Q 040204 42 RFRGG--MQIFVESSDTIDNVKAKIQDKKGTPPDQQRQIFW 80 (97)
Q Consensus 42 ~~~~g--~~i~v~~~~TV~~lK~~I~~~~gip~~~q~Lif~ 80 (97)
+..|| -.+.|+.+.|-.+++.++.+..+++.+ ..+-|.
T Consensus 18 ~Y~GG~tr~i~V~r~~s~~el~~kl~~~~~~~~~-~~lky~ 57 (97)
T cd06410 18 RYVGGETRIVSVDRSISFKELVSKLSELFGAGVV-VTLKYQ 57 (97)
T ss_pred EEcCCceEEEEEcCCCCHHHHHHHHHHHhCCCCc-eEEEEE
Confidence 34455 236677888999999999999888876 666554
No 179
>PF10209 DUF2340: Uncharacterized conserved protein (DUF2340); InterPro: IPR018794 This entry consists of small proteins of approximately 150 amino acids whose function is unknown.
Probab=32.25 E-value=25 Score=22.53 Aligned_cols=23 Identities=17% Similarity=0.299 Sum_probs=18.7
Q ss_pred EEe---CCCCCCccceec-ccceeeee
Q 040204 19 KRL---EDGRTLVDYNIH-GSTLHSVR 41 (97)
Q Consensus 19 ~~L---~d~~tL~~y~I~-~sti~l~i 41 (97)
+.| +++++|.++||. ++.|.++.
T Consensus 81 ~iL~~~~~~~tL~~~gv~nETEiSfF~ 107 (122)
T PF10209_consen 81 WILDVSDDDKTLKELGVENETEISFFN 107 (122)
T ss_pred eeeecCCCCCcHHHcCCCccceeeeeC
Confidence 567 789999999999 88876654
No 180
>PF13439 Glyco_transf_4: Glycosyltransferase Family 4; PDB: 2JJM_E 3MBO_C 2GEJ_A 2GEK_A.
Probab=32.16 E-value=45 Score=20.51 Aligned_cols=25 Identities=20% Similarity=0.365 Sum_probs=14.4
Q ss_pred HHHHHhhhhhcCCCCCceEEEECeEe
Q 040204 58 DNVKAKIQDKKGTPPDQQRQIFWFVF 83 (97)
Q Consensus 58 ~~lK~~I~~~~gip~~~q~Lif~G~~ 83 (97)
..+|+.+.+ .|+++++-.+||+|..
T Consensus 148 ~~~~~~l~~-~~~~~~ki~vI~ngid 172 (177)
T PF13439_consen 148 ESTKDELIK-FGIPPEKIHVIYNGID 172 (177)
T ss_dssp HHHHHHHHH-HT--SS-EEE----B-
T ss_pred HHHHHHHHH-hCCcccCCEEEECCcc
Confidence 367888888 9999999999999986
No 181
>TIGR02958 sec_mycoba_snm4 secretion protein snm4. Members of this family are the 12-transmembrane domain protein snm4, where snm stands for secretion in mycocbacteria. This system acts on Mycobacterium tuberculosis related pair of virulence factors ESAT-6 and CFP-10 and on other homologs. The system is conserved in many Actinobacteria, including the non-pathogenic Mycobacterium smegmatis.
Probab=31.83 E-value=25 Score=27.19 Aligned_cols=30 Identities=20% Similarity=0.268 Sum_probs=26.0
Q ss_pred CCEEeCCCCCCccceec-ccceeeeeeeecc
Q 040204 17 AGKRLEDGRTLVDYNIH-GSTLHSVRRFRGG 46 (97)
Q Consensus 17 ~g~~L~d~~tL~~y~I~-~sti~l~i~~~~g 46 (97)
+|.+|+.++||.+.+|. |+.+++.......
T Consensus 54 gG~pL~~~~sL~~~gV~DG~~L~L~p~~~~~ 84 (452)
T TIGR02958 54 GGSPLDPDASLAEAGVRDGELLVLVPASATE 84 (452)
T ss_pred CCCCCCCCCCHHHcCCCCCCeEEEeeCCCCC
Confidence 88999999999999999 9999988754433
No 182
>cd06398 PB1_Joka2 The PB1 domain is present in the Nicotiana plumbaginifolia Joka2 protein which interacts with sulfur stress inducible UP9 protein. The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module
Probab=29.32 E-value=95 Score=18.61 Aligned_cols=31 Identities=10% Similarity=0.074 Sum_probs=25.7
Q ss_pred ccchhHHHHHhhhhhcCCCC-CceEEEECeEe
Q 040204 53 SSDTIDNVKAKIQDKKGTPP-DQQRQIFWFVF 83 (97)
Q Consensus 53 ~~~TV~~lK~~I~~~~gip~-~~q~Lif~G~~ 83 (97)
++.+-..|+++|++..++++ ....|-|..-.
T Consensus 23 ~d~~~~~L~~kI~~~f~l~~~~~~~l~Y~Ded 54 (91)
T cd06398 23 LDLNMDGLREKVEELFSLSPDADLSLTYTDED 54 (91)
T ss_pred CCCCHHHHHHHHHHHhCCCCCCcEEEEEECCC
Confidence 46789999999999999987 67777776654
No 183
>smart00143 PI3K_p85B PI3-kinase family, p85-binding domain. Region of p110 PI3K that binds the p85 subunit.
Probab=28.44 E-value=67 Score=18.93 Aligned_cols=35 Identities=23% Similarity=0.341 Sum_probs=22.9
Q ss_pred eeeeeccchhHHHHHhhh-hhcCCC-----CCceEEEECeE
Q 040204 48 QIFVESSDTIDNVKAKIQ-DKKGTP-----PDQQRQIFWFV 82 (97)
Q Consensus 48 ~i~v~~~~TV~~lK~~I~-~~~gip-----~~~q~Lif~G~ 82 (97)
.+.|..+.|+.++|+.+= +....| -+.+.-+|.|.
T Consensus 3 ~l~v~~~aTl~~IK~~lw~~A~~~Pl~~~L~d~~~Y~F~~i 43 (78)
T smart00143 3 TLRVLREATLSTIKHELFKQARKMPLGQLLQDESSYIFVSV 43 (78)
T ss_pred eEEccccccHHHHHHHHHHHHHhCCHHHHhCCccceEEEee
Confidence 456688999999999984 445555 34444445443
No 184
>PF06543 Lac_bphage_repr: Lactococcus bacteriophage repressor; InterPro: IPR009498 This entry represents the C terminus of various Lactococcus bacteriophage repressor proteins.
Probab=27.93 E-value=25 Score=18.88 Aligned_cols=13 Identities=31% Similarity=0.542 Sum_probs=9.7
Q ss_pred eEEEECCEEeCCC
Q 040204 12 QRFIFAGKRLEDG 24 (97)
Q Consensus 12 Q~L~~~g~~L~d~ 24 (97)
-.+.|+|++|.|+
T Consensus 22 ~wvSf~GrPltde 34 (49)
T PF06543_consen 22 KWVSFDGRPLTDE 34 (49)
T ss_pred HheeeCCeeCCHH
Confidence 3567899998764
No 185
>PF08783 DWNN: DWNN domain; InterPro: IPR014891 The ~75-residue DWNN (Domain With No Name) domain is highly conserved through eukaryotic species but is absent in prokaryotes. The DWNN domain is found only at the N terminus of the RBBP6 family of proteins which includes: Mammalian RBBP6, a splicing-associated protein that plays a role in the induction of apoptosis and regulation of the cell cycle. Drosophila melanogaster (Fruit fly) SNAMA (something that sticks like glue), a protein that appears to play a role in apoptosis. All of the identified RBBP6 homologues include the DWNN domain, a CCHC-type zinc finger (see PDOC50158 from PROSITEDOC) and a RING-type zinc finger (see PDOC00449 from PROSITEDOC). The three domain form is found in plants, protozoa, fungi and microsporidia. The RBBP6 homologues in vertebrates, insects and worms are longer and include additional domains. In addition to forming part of the full-length RBBP6 protein, the DWNN domain is also expressed in vertebrates as a small protein containing a DWNN domain and a short C-terminal tail (RBBP6 variant 3). The DWNN domain adopts a fold similar to the ubiquitin one, characterised by two alpha-helices and four beta-sheets ordered as beta-beta-alpha-beta-alpha-beta along the sequence. The similarity of DWNN domain to ubiquitin and the presence of the RING finger suggest that the DWNN domain may act as an ubiquitin-like modifier, possibly playing a role in the regulation of the splicing machinery [, ]. ; GO: 0008270 zinc ion binding, 0005634 nucleus; PDB: 2C7H_A.
Probab=27.74 E-value=43 Score=19.50 Aligned_cols=18 Identities=28% Similarity=0.309 Sum_probs=14.1
Q ss_pred ccchhHHHHHhhhhhcCC
Q 040204 53 SSDTIDNVKAKIQDKKGT 70 (97)
Q Consensus 53 ~~~TV~~lK~~I~~~~gi 70 (97)
+.-+|.+||..|.++.++
T Consensus 19 ~~Isv~dLKr~I~~~~~l 36 (74)
T PF08783_consen 19 TSISVFDLKREIIEKKKL 36 (74)
T ss_dssp SEEEHHHHHHHHHHHHT-
T ss_pred CeeEHHHHHHHHHHHhCC
Confidence 356999999999877765
No 186
>PF06200 tify: tify domain; InterPro: IPR010399 The tify domain is a 36-amino acid domain only found among Embryophyta (land plants). It has been named after the most conserved amino acid pattern (TIF[F/Y]XG) it contains, but was previously known as the Zim domain. As the use of uppercase characters (TIFY) might imply that the domain is fully conserved across proteins, a lowercase lettering has been chosen in an attempt to highlight the reality of its natural variability. Based on the domain architecture, tify domain containing proteins can be classified into two groups. Group I is formed by proteins possessing a CCT (CONSTANS, CO-like, and TOC1) domain and a GATA-type zinc finger in addition to the tify domain. Group II contains proteins characterised by the tify domain but lacking a GATA-type zinc finger. Tify domain containing proteins might be involved in developmental processes and some of them have features that are characteristic for transcription factors: a nuclear localisation and the presence of a putative DNA-binding domain []. Some proteins known to contain a tify domain include: Arabidopsis thaliana Zinc-finger protein expressed in Inflorescence Meristem (ZIM), a putative transcription factor involved in inflorescence and flower development [, ]. A. thaliana ZIM-like proteins (ZML) []. A. thaliana PEAPOD1 and PEAPOD2 (PPD1 and PPD2) [].
Probab=27.73 E-value=68 Score=16.02 Aligned_cols=13 Identities=8% Similarity=-0.156 Sum_probs=10.7
Q ss_pred CCCceEEEECeEe
Q 040204 71 PPDQQRQIFWFVF 83 (97)
Q Consensus 71 p~~~q~Lif~G~~ 83 (97)
...+..+.|+|+.
T Consensus 4 ~~~qLTIfY~G~V 16 (36)
T PF06200_consen 4 ETAQLTIFYGGQV 16 (36)
T ss_pred CCCcEEEEECCEE
Confidence 3568899999997
No 187
>PF08299 Bac_DnaA_C: Bacterial dnaA protein helix-turn-helix; InterPro: IPR013159 This entry represents the C-terminal domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; GO: 0005524 ATP binding, 0043565 sequence-specific DNA binding, 0006270 DNA-dependent DNA replication initiation, 0006275 regulation of DNA replication; PDB: 2HCB_B 3R8F_C 1L8Q_A 3PVP_B 3PVV_A 1J1V_A.
Probab=27.32 E-value=28 Score=19.67 Aligned_cols=19 Identities=16% Similarity=0.370 Sum_probs=13.3
Q ss_pred hhHHHHHhhhhhcCCCCCc
Q 040204 56 TIDNVKAKIQDKKGTPPDQ 74 (97)
Q Consensus 56 TV~~lK~~I~~~~gip~~~ 74 (97)
|++++.+.+.+..|+++++
T Consensus 1 t~~~Ii~~Va~~~~v~~~~ 19 (70)
T PF08299_consen 1 TIEDIIEAVAEYFGVSVED 19 (70)
T ss_dssp -HHHHHHHHHHHTT--HHH
T ss_pred CHHHHHHHHHHHHCCCHHH
Confidence 6788899999999988654
No 188
>PF11197 DUF2835: Protein of unknown function (DUF2835); InterPro: IPR021363 This is a bacterial family of uncharacterised proteins. One member of this family (A4VM42 from SWISSPROT) is annotated as the A subunit of Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV).
Probab=24.94 E-value=7.5 Score=22.35 Aligned_cols=27 Identities=4% Similarity=-0.103 Sum_probs=18.3
Q ss_pred CCCCCceEEEECeEe--------CCCccceecccc
Q 040204 69 GTPPDQQRQIFWFVF--------GWGSLWMPLLRF 95 (97)
Q Consensus 69 gip~~~q~Lif~G~~--------~~~~~~~~~~~~ 95 (97)
+|+.++..-.|.|.. +++++|+|.-+|
T Consensus 6 ~is~~~~l~~Y~G~a~~V~v~s~~Gr~v~~Pa~~l 40 (68)
T PF11197_consen 6 NISYQEFLAYYQGAASKVVVRSDDGRRVQFPARHL 40 (68)
T ss_pred EcCHHHHHHhccccccEEEEEecCCcEEEEeHHHC
Confidence 345555555677754 779999997655
No 189
>PF14732 UAE_UbL: Ubiquitin/SUMO-activating enzyme ubiquitin-like domain; PDB: 1Y8Q_B 1Y8R_E 3KYD_B 3KYC_B.
Probab=24.67 E-value=37 Score=20.13 Aligned_cols=16 Identities=31% Similarity=0.422 Sum_probs=10.1
Q ss_pred CCCCccceec-ccceee
Q 040204 24 GRTLVDYNIH-GSTLHS 39 (97)
Q Consensus 24 ~~tL~~y~I~-~sti~l 39 (97)
.++|+++||. |+.+.+
T Consensus 50 ~k~L~elgi~~gs~L~v 66 (87)
T PF14732_consen 50 PKKLSELGIVNGSILTV 66 (87)
T ss_dssp TSBGGGGT--TT-EEEE
T ss_pred cCChhHcCCCCCCEEEE
Confidence 4789999999 887654
No 190
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=23.66 E-value=96 Score=23.59 Aligned_cols=33 Identities=9% Similarity=0.085 Sum_probs=29.2
Q ss_pred eeeeeccchhHHHHHhhhhhcCCCCCceEEEEC
Q 040204 48 QIFVESSDTIDNVKAKIQDKKGTPPDQQRQIFW 80 (97)
Q Consensus 48 ~i~v~~~~TV~~lK~~I~~~~gip~~~q~Lif~ 80 (97)
..+|..+-||-+++.+...+-|+.+..++|.|-
T Consensus 351 s~~I~~~~TV~D~~~~Ld~~VGvk~trMkLf~L 383 (418)
T KOG2982|consen 351 SGLICMTRTVLDFMKILDPKVGVKFTRMKLFLL 383 (418)
T ss_pred ceEEEeehHHHHHHHHhccccccccceeEEEEE
Confidence 355677889999999999999999999999884
No 191
>PF12436 USP7_ICP0_bdg: ICP0-binding domain of Ubiquitin-specific protease 7; InterPro: IPR024729 This domain is found in eukaryotes, and is approximately 40 amino acids in length. It is found in proteins of the peptidase C19 family, which contains contains ubiquitinyl hydrolases like ubiquitin-specific protease 7 (USP7). USP7 regulates the turnover of p53 [].; PDB: 2KVR_A 2YLM_A.
Probab=23.42 E-value=1.4e+02 Score=21.11 Aligned_cols=36 Identities=19% Similarity=0.476 Sum_probs=26.5
Q ss_pred eeeeeccchhHHHHHhhhhhcCCCCCceEEEECeEe
Q 040204 48 QIFVESSDTIDNVKAKIQDKKGTPPDQQRQIFWFVF 83 (97)
Q Consensus 48 ~i~v~~~~TV~~lK~~I~~~~gip~~~q~Lif~G~~ 83 (97)
.+.|+.+++|.++-..|.+.-|.|++..-++|.=..
T Consensus 88 h~~v~~~~~v~~l~~~i~~~~g~p~~t~l~lyEEi~ 123 (249)
T PF12436_consen 88 HVYVPKNDKVSELVPLINERAGLPPDTPLLLYEEIK 123 (249)
T ss_dssp EEEEETT-BGGGTHHHHHHHHT--TT--EEEEEEEE
T ss_pred EEEECCCCCHHHHHHHHHHHcCCCCCCceEEEEEec
Confidence 466799999999999999999999999999887543
No 192
>PF14044 NETI: NETI protein
Probab=22.42 E-value=1.5e+02 Score=16.39 Aligned_cols=17 Identities=29% Similarity=0.464 Sum_probs=10.9
Q ss_pred eeeccchhHHHHHhhhh
Q 040204 50 FVESSDTIDNVKAKIQD 66 (97)
Q Consensus 50 ~v~~~~TV~~lK~~I~~ 66 (97)
.|..++||++--+++.+
T Consensus 3 eV~enETI~~CL~RM~~ 19 (57)
T PF14044_consen 3 EVEENETISDCLARMKK 19 (57)
T ss_pred eccCCCcHHHHHHHHHH
Confidence 45667777776666644
No 193
>cd01787 GRB7_RA RA (RAS-associated like) domain of Grb7. Grb7_RA The RA (RAS-associated like) domain of Grb7. Grb7 is an adaptor molecule that mediates signal transduction from multiple cell surface receptors to various downstream signaling pathways. Grb7 and its related family members Grb10 and Grb14 share a conserved domain architecture that includes an amino-terminal proline-rich region, a central segment termed the GM region (for Grb and Mig) which includes the RA, PIR, and PH domains, and a carboxyl-terminal SH2 domain. Grb7/10/14 family proteins are phosphorylated on serine/threonine as well as tyrosine residues and are mainly localized to the cytoplasm.
Probab=22.28 E-value=1.9e+02 Score=17.32 Aligned_cols=32 Identities=19% Similarity=0.157 Sum_probs=25.2
Q ss_pred ecceeeeeeccchhHHHHHhhhhhcCCCCCce
Q 040204 44 RGGMQIFVESSDTIDNVKAKIQDKKGTPPDQQ 75 (97)
Q Consensus 44 ~~g~~i~v~~~~TV~~lK~~I~~~~gip~~~q 75 (97)
.....|.|+.+.|+.++=+++.++.....+.-
T Consensus 12 g~sK~l~V~~~~Ta~dV~~~L~~K~h~~~~~~ 43 (85)
T cd01787 12 GASKSLEVDERMTARDVCQLLVDKNHCQDDSS 43 (85)
T ss_pred CCeeEEEEcCCCcHHHHHHHHHHHhCCCCCCC
Confidence 33467888999999999999999988665443
No 194
>cd01611 GABARAP Ubiquitin domain of GABA-receptor-associated protein. GABARAP (GABA-receptor-associated protein) belongs ot a large family of proteins that mediate intracellular membrane trafficking and/or fusion. GABARAP binds not only to GABA, type A but also to tubulin, gephrin, and ULK1. Orthologues of GABARAP include Gate-16 (golgi-associated ATPase enhancer), LC3 (microtubule-associated protein light chain 3), and ATG8 (autophagy protein 8). ATG8 is a ubiquitin-like protein that is conjugated to the membrane phospholipid, phosphatidylethanolamine as part of a ubiquitin-like conjugation system essential for autophagosome-formation.
Probab=21.32 E-value=2.1e+02 Score=17.80 Aligned_cols=33 Identities=18% Similarity=0.181 Sum_probs=26.6
Q ss_pred eeeeccchhHHHHHhhhhhcCCCCCceEEEECe
Q 040204 49 IFVESSDTIDNVKAKIQDKKGTPPDQQRQIFWF 81 (97)
Q Consensus 49 i~v~~~~TV~~lK~~I~~~~gip~~~q~Lif~G 81 (97)
..|..+.||+++...|+.+-++.+++--.+|=|
T Consensus 45 flVp~~~tv~~f~~~irk~l~l~~~~slfl~Vn 77 (112)
T cd01611 45 YLVPSDLTVGQFVYIIRKRIQLRPEKALFLFVN 77 (112)
T ss_pred EEecCCCCHHHHHHHHHHHhCCCccceEEEEEC
Confidence 457899999999999999988888775555544
No 195
>cd01775 CYR1_RA Ubiquitin domain of CYR1 adenylate cyclase. CYR1 is a fungal adenylate cyclase with at least four domains, an N-terminal RA (Ras association) domain, a middle leucine-rich repeat domain, a catalytic domain. The N-terminal RA domain of CYR1 post-translationally modifies a small GTPase called Ras. The Ras-CYR1 pathway has been implicated in the transduction of a glucose-triggered signal to an intracellular environment where a protein phosphorylation cascade is initiated by cyclic AMP.
Probab=21.20 E-value=2.1e+02 Score=17.57 Aligned_cols=35 Identities=11% Similarity=0.088 Sum_probs=25.1
Q ss_pred eeeeeeccchhHHHHHhhhhhcCCCC--CceEEEECe
Q 040204 47 MQIFVESSDTIDNVKAKIQDKKGTPP--DQQRQIFWF 81 (97)
Q Consensus 47 ~~i~v~~~~TV~~lK~~I~~~~gip~--~~q~Lif~G 81 (97)
.++....+.||+++-..+..+..++. +-|-++..|
T Consensus 15 ~Tls~~l~tTv~eli~~L~rK~~l~~~~ny~l~l~~~ 51 (97)
T cd01775 15 TTLSCPLNTTVSELIPQLAKKFYLPSGGNYQLSLKKH 51 (97)
T ss_pred EEEEcCCcCcHHHHHHHHHHhhcCCCCCCeEEEEEEC
Confidence 34666889999999999999987765 334444444
No 196
>PF09673 TrbC_Ftype: Type-F conjugative transfer system pilin assembly protein; InterPro: IPR019106 This entry represents TrbC, a protein that is an essential component of the F-type conjugative pilus assembly system (aka type 4 secretion system) for the transfer of plasmid DNA [, ]. The N-terminal portion of these proteins is heterogeneous.
Probab=20.83 E-value=1.5e+02 Score=18.24 Aligned_cols=33 Identities=15% Similarity=0.096 Sum_probs=24.0
Q ss_pred eeeeccchhHHHHHhhhhhcCCCCCceEEEECeEeC
Q 040204 49 IFVESSDTIDNVKAKIQDKKGTPPDQQRQIFWFVFG 84 (97)
Q Consensus 49 i~v~~~~TV~~lK~~I~~~~gip~~~q~Lif~G~~~ 84 (97)
++|..++.-+.||+.+.+.++. .-.+++.|--+
T Consensus 2 iFvS~SMP~~~L~~l~~~a~~~---~~~~V~RG~~~ 34 (113)
T PF09673_consen 2 IFVSFSMPDASLRNLLKQAERA---GVVVVFRGFPD 34 (113)
T ss_pred EEEECCCCHHHHHHHHHHHHhC---CcEEEEECCCC
Confidence 4566677777888888887776 56777777663
No 197
>PF14854 LURAP: Leucine rich adaptor protein
Probab=20.78 E-value=77 Score=20.29 Aligned_cols=20 Identities=15% Similarity=0.341 Sum_probs=16.9
Q ss_pred eccchhHHHHHhhhhhcCCC
Q 040204 52 ESSDTIDNVKAKIQDKKGTP 71 (97)
Q Consensus 52 ~~~~TV~~lK~~I~~~~gip 71 (97)
.-+++|+++|..++|+..+.
T Consensus 47 ~vNEsIe~~KWlmEEr~~l~ 66 (121)
T PF14854_consen 47 AVNESIEEVKWLMEERGALT 66 (121)
T ss_pred HHHhhHHHHHHHHHHhhccc
Confidence 45889999999999987653
No 198
>PF10407 Cytokin_check_N: Cdc14 phosphatase binding protein N-terminus ; InterPro: IPR018844 Cytokinesis in yeasts involves a family of proteins whose essential function is to bind Cdc14-family phosphatase and prevent this from being sequestered and inhibited in the nucleolus. This is the highly conserved N terminus of a family of proteins which act as cytokinesis checkpoint controls by allowing cells to cope with cytokinesis defects. These proteins are required for rDNA silencing and mini-chromosome maintenance [].
Probab=20.75 E-value=1.2e+02 Score=17.62 Aligned_cols=34 Identities=12% Similarity=0.252 Sum_probs=23.2
Q ss_pred eeeeccchhHHHHHhhhhhcC--CCCCceEEEECeEe
Q 040204 49 IFVESSDTIDNVKAKIQDKKG--TPPDQQRQIFWFVF 83 (97)
Q Consensus 49 i~v~~~~TV~~lK~~I~~~~g--ip~~~q~Lif~G~~ 83 (97)
...+|+.|+.+|+..|.++.. .|-+. .+.-..-|
T Consensus 7 hlt~~~~tl~~L~~eI~~~f~kLYP~~~-~~~I~~LQ 42 (73)
T PF10407_consen 7 HLTDPNNTLSQLKEEIEERFKKLYPNEP-ELEILSLQ 42 (73)
T ss_pred EEeCCCCcHHHHHHHHHHHHHHHCCCCC-CceEEEee
Confidence 345899999999999999863 44333 44444444
No 199
>PF15625 CC2D2AN-C2: CC2D2A N-terminal C2 domain
Probab=20.57 E-value=2.5e+02 Score=18.51 Aligned_cols=41 Identities=15% Similarity=0.336 Sum_probs=27.2
Q ss_pred ceEEEECCEEeC--CCCCC-ccceec-ccceeeeeee-ecceeeee
Q 040204 11 QQRFIFAGKRLE--DGRTL-VDYNIH-GSTLHSVRRF-RGGMQIFV 51 (97)
Q Consensus 11 ~Q~L~~~g~~L~--d~~tL-~~y~I~-~sti~l~i~~-~~g~~i~v 51 (97)
..+++|+||... ..+.| .++.+. +.++.+.+.. +..+.|.+
T Consensus 40 ~ikl~~N~k~V~~T~~~~l~~dF~v~f~~~f~v~i~~~Pesi~l~i 85 (168)
T PF15625_consen 40 YIKLFFNDKEVSRTRSRPLWSDFRVHFNEIFNVQITRWPESIKLEI 85 (168)
T ss_pred EEEEEECCEEEEeeeeEecCCCeEEeccCEEEEEEecCCCEEEEEE
Confidence 367889999974 45667 788888 8877776643 33344444
No 200
>PRK06959 putative threonine-phosphate decarboxylase; Provisional
Probab=20.49 E-value=1.1e+02 Score=22.21 Aligned_cols=31 Identities=16% Similarity=-0.004 Sum_probs=25.0
Q ss_pred eccchhHHHHHhhhhhcCCCCCceEEEECeEe
Q 040204 52 ESSDTIDNVKAKIQDKKGTPPDQQRQIFWFVF 83 (97)
Q Consensus 52 ~~~~TV~~lK~~I~~~~gip~~~q~Lif~G~~ 83 (97)
.|+.. .+|++.|.+..|++..+|.++-+|-+
T Consensus 51 Yp~~~-~~L~~~ia~~~~~~~~~~I~i~~Gs~ 81 (339)
T PRK06959 51 LPEDD-DGLAACAARYYGAPDAAHVLPVAGSQ 81 (339)
T ss_pred CCCch-HHHHHHHHHHhCCCCcccEEECcCHH
Confidence 45555 89999999999998667888888766
Done!