Query 040204
Match_columns 97
No_of_seqs 136 out of 1260
Neff 7.9
Searched_HMMs 29240
Date Mon Mar 25 09:27:27 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040204.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/040204hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rt3_B Ubiquitin-like protein 99.9 8E-25 2.7E-29 143.3 7.3 89 1-89 32-138 (159)
2 3u30_A Ubiquitin, linear DI-ub 99.9 1.1E-24 3.6E-29 144.7 7.1 88 1-88 50-152 (172)
3 3b08_A Polyubiquitin-C, ubiqui 99.9 5.4E-23 1.8E-27 132.9 7.7 89 1-89 30-133 (152)
4 3plu_A Ubiquitin-like modifier 99.5 1.6E-14 5.4E-19 87.6 6.1 56 34-89 19-78 (93)
5 1wju_A NEDD8 ultimate buster-1 99.5 6.4E-14 2.2E-18 86.0 6.3 49 35-83 16-68 (100)
6 1uh6_A Ubiquitin-like 5; beta- 99.4 2.9E-13 1E-17 83.0 7.0 65 24-88 14-84 (100)
7 3phx_B Ubiquitin-like protein 99.4 9.4E-14 3.2E-18 80.9 2.8 45 1-45 34-79 (79)
8 2uyz_B Small ubiquitin-related 99.4 6.5E-14 2.2E-18 81.6 1.8 46 1-46 33-79 (79)
9 2lxa_A Ubiquitin-like protein 99.4 5.3E-13 1.8E-17 79.9 5.7 52 37-88 2-60 (87)
10 2kdi_A Ubiquitin, vacuolar pro 99.4 2.4E-13 8.1E-18 85.0 3.7 59 1-59 39-98 (114)
11 4ajy_B Transcription elongatio 99.4 9.2E-13 3.2E-17 82.9 6.4 52 38-89 4-58 (118)
12 3phx_B Ubiquitin-like protein 99.4 1.2E-12 4.1E-17 76.1 6.1 54 35-88 3-60 (79)
13 4fbj_B NEDD8; effector-HOST ta 99.4 1.6E-13 5.6E-18 81.8 2.3 48 1-48 30-78 (88)
14 1wyw_B Ubiquitin-like protein 99.4 1.6E-13 5.6E-18 83.3 1.8 46 1-46 51-97 (97)
15 2fnj_B Transcription elongatio 99.4 1.5E-12 5.2E-17 81.9 6.2 42 47-88 14-57 (118)
16 3plu_A Ubiquitin-like modifier 99.3 2.9E-13 9.9E-18 82.0 2.6 40 1-40 51-91 (93)
17 1ndd_A NEDD8, protein (ubiquit 99.3 3.6E-13 1.2E-17 77.3 2.7 46 1-46 30-76 (76)
18 1wju_A NEDD8 ultimate buster-1 99.3 1.9E-13 6.5E-18 83.9 1.5 44 1-45 49-93 (100)
19 2fnj_B Transcription elongatio 99.3 2.2E-13 7.4E-18 85.8 1.8 58 1-59 31-98 (118)
20 3dbh_I NEDD8; cell cycle, acti 99.3 2.4E-13 8.1E-18 80.4 1.4 46 1-46 42-88 (88)
21 4eew_A Large proline-rich prot 99.3 3.3E-12 1.1E-16 75.7 6.4 55 34-88 15-73 (88)
22 4dwf_A HLA-B-associated transc 99.3 3.6E-12 1.2E-16 75.8 6.4 55 35-89 4-62 (90)
23 2kan_A Uncharacterized protein 99.3 4.1E-13 1.4E-17 81.2 2.0 47 1-47 44-92 (94)
24 3n3k_B Ubiquitin; hydrolase, p 99.3 5.5E-13 1.9E-17 78.3 2.5 46 1-46 33-79 (85)
25 4hcn_B Polyubiquitin, ubiquiti 99.3 5.1E-13 1.7E-17 81.1 2.4 46 1-46 52-98 (98)
26 3a9j_A Ubiquitin; protein comp 99.3 8E-13 2.7E-17 75.8 2.9 46 1-46 30-76 (76)
27 3n3k_B Ubiquitin; hydrolase, p 99.3 4E-12 1.4E-16 74.5 6.0 50 34-83 1-52 (85)
28 2lxa_A Ubiquitin-like protein 99.3 6.4E-13 2.2E-17 79.6 2.4 42 2-43 35-78 (87)
29 2faz_A Ubiquitin-like containi 99.3 8.2E-13 2.8E-17 76.6 2.8 43 1-43 34-77 (78)
30 2l7r_A Ubiquitin-like protein 99.3 3.6E-13 1.2E-17 81.2 1.1 46 1-46 47-93 (93)
31 4ajy_B Transcription elongatio 99.3 9.5E-13 3.3E-17 82.8 2.9 53 1-53 31-92 (118)
32 3k9o_B Ubiquitin, UBB+1; E2-25 99.3 1E-12 3.5E-17 79.0 2.8 50 1-50 31-81 (96)
33 1sif_A Ubiquitin; hydrophobic 99.3 8.1E-13 2.8E-17 78.8 2.3 46 1-46 39-85 (88)
34 1yx5_B Ubiquitin; proteasome, 99.3 1.3E-12 4.4E-17 79.1 3.1 52 1-52 30-82 (98)
35 2kk8_A Uncharacterized protein 99.3 6.5E-12 2.2E-16 74.5 6.1 50 34-83 8-59 (84)
36 4a20_A Ubiquitin-like protein 99.3 7E-12 2.4E-16 76.5 6.3 55 34-88 17-78 (98)
37 3mtn_B UBA80, ubcep1, ubiquiti 99.3 5.9E-12 2E-16 73.7 5.8 50 34-83 1-52 (85)
38 2kan_A Uncharacterized protein 99.3 7.7E-12 2.6E-16 75.6 6.4 50 34-83 13-63 (94)
39 1wy8_A NP95-like ring finger p 99.3 8.3E-13 2.8E-17 78.4 2.0 47 1-47 39-86 (89)
40 1se9_A Ubiquitin family; ubiqu 99.3 2.7E-12 9.3E-17 81.6 4.3 45 2-46 53-106 (126)
41 1wh3_A 59 kDa 2'-5'-oligoadeny 99.3 8.2E-13 2.8E-17 78.1 1.8 47 1-47 37-84 (87)
42 2kk8_A Uncharacterized protein 99.3 7.4E-13 2.5E-17 78.6 1.6 43 1-43 40-84 (84)
43 4fbj_B NEDD8; effector-HOST ta 99.3 6.7E-12 2.3E-16 74.8 5.6 51 38-88 2-56 (88)
44 3mtn_B UBA80, ubcep1, ubiquiti 99.3 1.3E-12 4.5E-17 76.5 2.3 46 1-46 33-79 (85)
45 1wgh_A Ubiquitin-like 3, HCG-1 99.3 1.8E-11 6.1E-16 76.9 7.6 60 29-88 9-80 (116)
46 2hj8_A Interferon-induced 17 k 99.3 4.5E-13 1.5E-17 79.8 0.1 47 1-47 34-81 (88)
47 3vdz_A Ubiquitin-40S ribosomal 99.3 1.7E-12 5.9E-17 80.6 2.8 46 1-46 65-111 (111)
48 3dbh_I NEDD8; cell cycle, acti 99.3 7.7E-12 2.6E-16 73.8 5.4 55 34-88 10-68 (88)
49 3rt3_B Ubiquitin-like protein 99.3 1.6E-12 5.6E-17 84.5 2.7 47 1-47 111-158 (159)
50 1wgd_A Homocysteine-responsive 99.3 1.2E-12 4.1E-17 78.7 1.7 45 2-46 40-89 (93)
51 3v6c_B Ubiquitin; structural g 99.3 1.2E-11 4.1E-16 73.9 5.9 55 34-88 15-73 (91)
52 3v6c_B Ubiquitin; structural g 99.3 1.8E-12 6.2E-17 77.5 2.3 43 1-43 47-90 (91)
53 2uyz_B Small ubiquitin-related 99.3 1.1E-11 3.8E-16 72.0 5.6 48 36-83 3-52 (79)
54 4a20_A Ubiquitin-like protein 99.2 3.5E-12 1.2E-16 77.9 3.5 43 2-44 53-97 (98)
55 2hj8_A Interferon-induced 17 k 99.2 1E-11 3.4E-16 73.9 5.4 49 35-83 3-53 (88)
56 3b1l_X E3 ubiquitin-protein li 98.9 6.1E-13 2.1E-17 76.7 0.0 45 1-45 30-75 (76)
57 4hcn_B Polyubiquitin, ubiquiti 99.2 1.1E-11 3.9E-16 75.1 5.7 55 34-88 20-78 (98)
58 1we7_A SF3A1 protein; structur 99.2 1.9E-12 6.6E-17 80.7 2.2 47 1-47 65-112 (115)
59 1uh6_A Ubiquitin-like 5; beta- 99.2 1.2E-12 4.1E-17 80.3 1.0 41 1-41 58-99 (100)
60 3m63_B Ubiquitin domain-contai 99.2 7.1E-12 2.4E-16 76.7 4.4 64 24-88 7-83 (101)
61 3l0w_B Monoubiquitinated proli 99.2 3.4E-12 1.2E-16 84.6 3.0 47 1-47 30-77 (169)
62 1se9_A Ubiquitin family; ubiqu 99.2 1.7E-11 5.9E-16 77.9 6.1 55 34-88 14-80 (126)
63 2faz_A Ubiquitin-like containi 99.2 2.4E-11 8.1E-16 70.3 6.2 53 36-88 2-60 (78)
64 2gow_A HCG-1 protein, ubiquiti 99.2 1E-11 3.4E-16 78.9 4.8 63 26-88 7-81 (125)
65 1wyw_B Ubiquitin-like protein 99.2 1.8E-11 6.1E-16 74.2 5.7 50 34-83 19-70 (97)
66 4dwf_A HLA-B-associated transc 99.2 3.7E-12 1.3E-16 75.8 2.6 46 1-46 35-80 (90)
67 3q3f_A Ribonuclease/ubiquitin 99.2 1.8E-12 6.2E-17 87.5 1.4 51 1-51 135-186 (189)
68 4dbg_A Ranbp-type and C3HC4-ty 99.2 2.3E-11 7.7E-16 75.2 6.2 55 34-88 22-82 (105)
69 1wh3_A 59 kDa 2'-5'-oligoadeny 99.2 3.2E-11 1.1E-15 71.1 6.5 55 34-88 5-63 (87)
70 2dzi_A Ubiquitin-like protein 99.2 4E-12 1.4E-16 73.9 2.5 43 1-43 37-80 (81)
71 2dzi_A Ubiquitin-like protein 99.2 3.6E-11 1.2E-15 69.8 6.6 55 34-88 5-63 (81)
72 1we6_A Splicing factor, putati 99.2 1.7E-12 5.9E-17 80.4 1.0 46 1-46 61-107 (111)
73 2kdb_A Homocysteine-responsive 99.2 1.7E-11 5.9E-16 74.9 5.4 55 34-88 21-83 (99)
74 1wgd_A Homocysteine-responsive 99.2 2.6E-11 8.9E-16 72.7 5.9 49 35-83 6-60 (93)
75 3m62_B UV excision repair prot 99.2 1.6E-11 5.5E-16 75.6 5.0 52 37-88 2-57 (106)
76 4eew_A Large proline-rich prot 99.2 5E-12 1.7E-16 74.9 2.5 42 1-42 47-88 (88)
77 2kd0_A LRR repeats and ubiquit 99.2 4E-11 1.4E-15 71.0 6.3 49 35-83 11-60 (85)
78 3u5e_m 60S ribosomal protein L 99.2 1.6E-12 5.5E-17 82.5 0.0 47 1-47 30-77 (128)
79 3u30_A Ubiquitin, linear DI-ub 99.2 3.3E-12 1.1E-16 84.2 1.5 46 1-46 126-172 (172)
80 2wyq_A HHR23A, UV excision rep 99.2 4.6E-11 1.6E-15 70.1 6.3 54 36-89 5-65 (85)
81 3m62_B UV excision repair prot 99.2 5.9E-12 2E-16 77.6 2.5 45 1-45 31-76 (106)
82 2ojr_A Ubiquitin; lanthide-bin 99.2 7.6E-12 2.6E-16 77.5 2.9 46 1-46 65-111 (111)
83 1yqb_A Ubiquilin 3; structural 99.2 4.1E-12 1.4E-16 77.6 1.7 46 1-46 51-97 (100)
84 2wyq_A HHR23A, UV excision rep 99.2 9.1E-12 3.1E-16 73.1 3.0 40 5-44 42-82 (85)
85 2bwf_A Ubiquitin-like protein 99.2 8.3E-12 2.8E-16 71.9 2.8 42 1-42 33-75 (77)
86 1yqb_A Ubiquilin 3; structural 99.2 4.6E-11 1.6E-15 72.9 6.1 55 34-88 20-77 (100)
87 1wx8_A Riken cDNA 4931431F19; 99.2 2.4E-12 8.3E-17 77.6 0.1 46 1-46 46-92 (96)
88 1uel_A HHR23B, UV excision rep 99.2 1.1E-11 3.7E-16 74.8 3.0 42 5-46 37-79 (95)
89 1wgg_A Ubiquitin carboxyl-term 99.2 3.7E-11 1.3E-15 72.8 5.3 50 34-83 5-56 (96)
90 1ndd_A NEDD8, protein (ubiquit 99.2 5.4E-11 1.8E-15 68.0 5.7 46 38-83 2-49 (76)
91 1j8c_A Ubiquitin-like protein 99.2 1.2E-11 4E-16 78.5 3.1 47 1-47 61-108 (125)
92 2klc_A Ubiquilin-1; ubiquitin- 99.2 5.9E-11 2E-15 72.4 6.2 59 30-88 18-80 (101)
93 2klc_A Ubiquilin-1; ubiquitin- 99.2 1.4E-11 4.7E-16 75.3 3.3 45 1-45 54-99 (101)
94 3u5c_f 40S ribosomal protein S 99.2 2.6E-12 8.8E-17 84.1 0.0 46 1-46 30-76 (152)
95 4b6w_A Tubulin-specific chaper 99.2 5.2E-12 1.8E-16 75.4 1.2 44 1-44 34-85 (86)
96 2kjr_A CG11242; UBL, ubiquitin 99.2 6.7E-11 2.3E-15 71.7 6.1 48 34-81 13-64 (95)
97 2bwf_A Ubiquitin-like protein 99.2 8.3E-11 2.9E-15 67.6 6.3 51 37-88 5-59 (77)
98 1ttn_A DC-UBP, dendritic cell- 99.2 6.5E-11 2.2E-15 72.7 6.1 50 34-83 21-72 (106)
99 1uel_A HHR23B, UV excision rep 99.2 7.7E-11 2.6E-15 71.0 6.3 51 38-88 2-59 (95)
100 1wy8_A NP95-like ring finger p 99.2 1E-10 3.5E-15 69.3 6.7 55 34-88 5-65 (89)
101 3vdz_A Ubiquitin-40S ribosomal 99.2 7.3E-11 2.5E-15 73.1 6.2 50 34-83 33-84 (111)
102 1sif_A Ubiquitin; hydrophobic 99.2 6.2E-11 2.1E-15 70.5 5.6 52 37-88 10-65 (88)
103 2kj6_A Tubulin folding cofacto 99.2 4.8E-11 1.6E-15 72.7 5.2 49 34-82 12-64 (97)
104 3k9o_B Ubiquitin, UBB+1; E2-25 99.2 7.2E-11 2.5E-15 70.8 5.9 52 37-88 2-57 (96)
105 3m63_B Ubiquitin domain-contai 99.1 7.4E-12 2.5E-16 76.6 1.4 43 1-43 57-100 (101)
106 4b6w_A Tubulin-specific chaper 99.1 6E-11 2.1E-15 70.7 5.3 53 36-88 2-67 (86)
107 1wx7_A Ubiquilin 3; ubiquitin- 99.1 1E-11 3.6E-16 76.2 1.9 46 1-46 46-92 (106)
108 4dbg_A Ranbp-type and C3HC4-ty 99.1 1.9E-11 6.3E-16 75.6 3.0 42 1-42 56-99 (105)
109 1v5t_A 8430435I17RIK protein; 99.1 7.6E-11 2.6E-15 70.5 5.6 50 34-83 5-59 (90)
110 2l7r_A Ubiquitin-like protein 99.1 6.6E-11 2.3E-15 71.1 5.3 55 34-88 17-73 (93)
111 3b08_A Polyubiquitin-C, ubiqui 99.1 1.8E-11 6.1E-16 78.4 2.8 46 1-46 106-152 (152)
112 2kd0_A LRR repeats and ubiquit 99.1 1.5E-11 5.2E-16 72.9 2.2 42 1-42 41-83 (85)
113 1ttn_A DC-UBP, dendritic cell- 99.1 1.2E-11 4E-16 76.1 1.5 46 1-46 53-99 (106)
114 1wx7_A Ubiquilin 3; ubiquitin- 99.1 1.4E-10 4.7E-15 71.1 6.3 50 34-83 15-65 (106)
115 1v5o_A 1700011N24RIK protein; 99.1 8.2E-12 2.8E-16 76.3 0.7 46 1-46 41-88 (102)
116 3a9j_A Ubiquitin; protein comp 99.1 1.4E-10 4.6E-15 66.3 5.8 51 38-88 2-56 (76)
117 1wx8_A Riken cDNA 4931431F19; 99.1 1E-10 3.5E-15 70.3 5.2 50 34-83 15-65 (96)
118 1wgh_A Ubiquitin-like 3, HCG-1 99.1 3.8E-11 1.3E-15 75.4 3.2 42 4-45 55-101 (116)
119 3l0w_B Monoubiquitinated proli 99.1 1.7E-10 5.7E-15 76.4 6.2 51 38-88 2-56 (169)
120 2xzm_9 RPS31E; ribosome, trans 99.1 8.8E-12 3E-16 84.1 0.0 51 38-88 2-56 (189)
121 2daf_A FLJ35834 protein; hypot 99.1 3.7E-11 1.3E-15 75.4 2.7 45 2-46 47-92 (118)
122 1yx5_B Ubiquitin; proteasome, 99.1 2.2E-10 7.5E-15 69.1 6.0 46 38-83 2-49 (98)
123 1j8c_A Ubiquitin-like protein 99.1 3.2E-10 1.1E-14 71.7 6.6 55 34-88 30-87 (125)
124 2gow_A HCG-1 protein, ubiquiti 99.1 3.9E-11 1.3E-15 76.2 2.1 43 4-46 56-103 (125)
125 1v86_A DNA segment, CHR 7, way 99.1 8.9E-11 3E-15 70.9 3.6 50 34-83 15-65 (95)
126 2dzm_A FAS-associated factor 1 99.1 1.7E-10 5.8E-15 70.6 4.8 47 37-83 10-59 (100)
127 2ojr_A Ubiquitin; lanthide-bin 99.1 4.1E-10 1.4E-14 69.6 6.6 49 35-83 34-84 (111)
128 2kdi_A Ubiquitin, vacuolar pro 99.1 2.8E-10 9.5E-15 70.9 5.8 53 36-88 9-65 (114)
129 1we6_A Splicing factor, putati 99.1 2.1E-10 7.1E-15 70.9 4.9 55 34-88 25-87 (111)
130 1we7_A SF3A1 protein; structur 99.1 4.6E-10 1.6E-14 69.8 6.5 50 34-83 23-84 (115)
131 1x1m_A Ubiquitin-like protein 99.0 4.9E-11 1.7E-15 73.5 1.9 43 2-44 55-101 (107)
132 1wxv_A BAG-family molecular ch 99.0 5.2E-10 1.8E-14 66.8 6.4 50 34-83 5-60 (92)
133 1wgg_A Ubiquitin carboxyl-term 99.0 3.9E-11 1.3E-15 72.7 1.1 43 1-44 37-80 (96)
134 1v2y_A 3300001G02RIK protein; 99.0 1E-10 3.5E-15 72.2 2.9 50 34-83 5-71 (105)
135 1v5o_A 1700011N24RIK protein; 99.0 4.4E-10 1.5E-14 68.5 5.7 49 35-83 6-60 (102)
136 3q3f_A Ribonuclease/ubiquitin 99.0 3E-10 1E-14 76.6 5.2 53 36-88 105-161 (189)
137 1v6e_A Cytoskeleton-associated 99.0 3E-10 1E-14 68.5 4.6 46 36-81 7-55 (95)
138 3b1l_X E3 ubiquitin-protein li 98.6 2.9E-11 9.9E-16 69.6 0.0 46 38-83 2-49 (76)
139 1v5t_A 8430435I17RIK protein; 99.0 6.3E-11 2.1E-15 70.9 1.3 43 1-43 37-83 (90)
140 2kdb_A Homocysteine-responsive 99.0 5.6E-11 1.9E-15 72.6 0.8 36 5-40 60-99 (99)
141 1wxv_A BAG-family molecular ch 99.0 8.3E-11 2.8E-15 70.3 1.4 44 1-44 41-86 (92)
142 2kjr_A CG11242; UBL, ubiquitin 99.0 1.1E-10 3.8E-15 70.8 1.2 40 1-40 47-93 (95)
143 3u5e_m 60S ribosomal protein L 99.0 7.2E-11 2.5E-15 74.8 0.0 46 38-83 2-49 (128)
144 1t0y_A Tubulin folding cofacto 98.9 1.6E-09 5.5E-14 68.1 5.8 47 35-81 5-54 (122)
145 2kj6_A Tubulin folding cofacto 98.9 1E-10 3.6E-15 71.2 -0.0 42 1-42 46-95 (97)
146 3u5c_f 40S ribosomal protein S 98.9 1.1E-10 3.9E-15 76.2 0.0 46 38-83 2-49 (152)
147 2dzj_A Synaptic glycoprotein S 98.9 1.1E-09 3.8E-14 65.4 4.0 47 37-83 11-65 (88)
148 4efo_A Serine/threonine-protei 98.9 1.7E-09 6E-14 65.4 4.8 37 47-83 26-62 (94)
149 1x1m_A Ubiquitin-like protein 98.9 2.8E-09 9.7E-14 65.5 5.8 50 34-83 10-76 (107)
150 2daf_A FLJ35834 protein; hypot 98.9 3E-09 1E-13 66.7 5.7 55 34-88 13-72 (118)
151 2io1_B Small ubiquitin-related 98.9 1.2E-09 4.2E-14 66.0 3.8 46 2-47 38-84 (94)
152 1v2y_A 3300001G02RIK protein; 98.9 1.1E-10 3.7E-15 72.1 -1.9 37 10-46 61-99 (105)
153 2dzm_A FAS-associated factor 1 98.8 1.6E-10 5.6E-15 70.7 -1.1 44 1-45 38-84 (100)
154 1v6e_A Cytoskeleton-associated 98.8 4.1E-10 1.4E-14 67.9 0.6 42 1-42 38-87 (95)
155 3ai5_A Yeast enhanced green fl 98.8 5.4E-09 1.8E-13 75.0 6.0 55 34-88 231-289 (307)
156 2dzj_A Synaptic glycoprotein S 98.8 4.8E-10 1.7E-14 67.0 0.3 38 2-39 44-85 (88)
157 1wia_A Hypothetical ubiquitin- 98.8 7E-09 2.4E-13 62.1 5.5 47 34-83 5-53 (95)
158 1wia_A Hypothetical ubiquitin- 98.8 1.8E-09 6E-14 64.8 2.8 38 9-46 42-81 (95)
159 1oqy_A HHR23A, UV excision rep 98.8 3.5E-09 1.2E-13 77.6 4.6 55 34-88 5-66 (368)
160 3ai5_A Yeast enhanced green fl 98.8 1.5E-09 5E-14 77.9 2.3 43 1-43 263-306 (307)
161 2xzm_9 RPS31E; ribosome, trans 98.8 8.4E-10 2.9E-14 74.4 0.0 43 1-47 30-72 (189)
162 1t0y_A Tubulin folding cofacto 98.8 2E-09 6.8E-14 67.7 1.7 43 1-43 37-87 (122)
163 2io0_B Small ubiquitin-related 98.8 6.9E-09 2.4E-13 62.4 4.0 46 2-47 36-82 (91)
164 1wf9_A NPL4 family protein; be 98.8 4.4E-09 1.5E-13 64.7 3.1 48 35-82 6-55 (107)
165 1v86_A DNA segment, CHR 7, way 98.7 3E-10 1E-14 68.6 -2.4 42 1-43 46-88 (95)
166 3shq_A UBLCP1; phosphatase, hy 98.7 6.6E-09 2.3E-13 74.8 4.0 49 35-83 4-56 (320)
167 2d07_B Ubiquitin-like protein 98.7 8.2E-09 2.8E-13 62.2 3.5 45 2-46 48-93 (93)
168 1oqy_A HHR23A, UV excision rep 98.7 3.8E-09 1.3E-13 77.4 2.3 43 4-46 43-87 (368)
169 2eke_C Ubiquitin-like protein 98.6 2E-08 6.7E-13 62.0 3.5 45 2-46 61-106 (106)
170 1wm3_A Ubiquitin-like protein 98.6 2.1E-08 7.1E-13 57.5 3.1 40 2-41 32-72 (72)
171 2kzr_A Ubiquitin thioesterase 98.6 3E-08 1E-12 58.5 3.7 44 38-81 2-47 (86)
172 1wz0_A Ubiquitin-like protein 98.5 1.5E-08 5.1E-13 62.3 0.6 45 2-46 55-100 (104)
173 2io1_B Small ubiquitin-related 98.5 3.2E-07 1.1E-11 55.3 5.8 50 34-83 5-56 (94)
174 3shq_A UBLCP1; phosphatase, hy 98.5 1.4E-08 4.8E-13 73.1 -0.3 45 1-45 34-82 (320)
175 3a4r_A Nfatc2-interacting prot 98.5 6.1E-08 2.1E-12 56.6 2.2 39 2-40 39-78 (79)
176 2k8h_A Small ubiquitin protein 98.4 2E-08 6.7E-13 62.4 -0.5 47 2-48 57-104 (110)
177 1wf9_A NPL4 family protein; be 98.4 1.2E-08 4E-13 62.8 -1.6 42 1-42 37-94 (107)
178 2io0_B Small ubiquitin-related 98.3 1.1E-06 3.8E-11 52.6 5.8 49 35-83 4-54 (91)
179 1wm3_A Ubiquitin-like protein 98.3 1E-06 3.4E-11 50.4 5.3 47 37-83 2-50 (72)
180 2kzr_A Ubiquitin thioesterase 98.3 9E-08 3.1E-12 56.4 0.3 42 1-42 30-77 (86)
181 3a4r_A Nfatc2-interacting prot 98.2 3.1E-06 1.1E-10 49.2 5.8 50 34-83 5-57 (79)
182 2d07_B Ubiquitin-like protein 98.2 4.2E-06 1.5E-10 50.1 5.6 50 34-83 15-66 (93)
183 2k8h_A Small ubiquitin protein 98.1 3.9E-06 1.3E-10 51.9 5.0 50 34-83 24-75 (110)
184 1wjn_A Tubulin-folding protein 98.1 6E-06 2E-10 49.5 5.4 47 35-81 8-59 (97)
185 1wjn_A Tubulin-folding protein 98.1 1.2E-06 4.1E-11 52.6 1.9 43 1-43 42-93 (97)
186 3pge_A SUMO-modified prolifera 98.1 2.4E-06 8.2E-11 57.9 3.5 45 2-46 59-104 (200)
187 1wz0_A Ubiquitin-like protein 98.0 4.7E-06 1.6E-10 51.0 4.0 50 34-83 22-73 (104)
188 2eke_C Ubiquitin-like protein 98.0 1.1E-05 3.7E-10 49.6 5.6 49 34-83 29-79 (106)
189 3kyd_D Small ubiquitin-related 98.0 6.4E-06 2.2E-10 51.4 3.8 42 2-43 71-113 (115)
190 3tix_A Ubiquitin-like protein 97.9 4.9E-06 1.7E-10 56.2 2.2 46 2-47 87-133 (207)
191 3v7o_A Minor nucleoprotein VP3 97.7 4.3E-06 1.5E-10 57.2 0.0 49 2-50 51-100 (227)
192 3kyd_D Small ubiquitin-related 97.4 0.0004 1.4E-08 43.2 5.7 54 30-83 32-89 (115)
193 4efo_A Serine/threonine-protei 97.3 0.00014 4.7E-09 43.8 2.9 33 1-33 43-77 (94)
194 2pjh_A Protein NPL4, nuclear p 97.3 0.00012 4.1E-09 42.6 2.4 46 37-82 5-51 (80)
195 3goe_A DNA repair protein RAD6 97.3 0.00018 6.1E-09 41.9 3.0 39 3-41 41-81 (82)
196 3pge_A SUMO-modified prolifera 97.1 0.00084 2.9E-08 45.4 5.5 49 34-83 27-77 (200)
197 3ix6_A TS, tsase, thymidylate 97.1 6.8E-05 2.3E-09 54.8 -0.0 48 2-49 51-99 (360)
198 3uf8_A Ubiquitin-like protein 97.0 0.00053 1.8E-08 46.4 3.3 48 2-49 51-99 (209)
199 4da1_A Protein phosphatase 1K, 96.9 0.00016 5.4E-09 52.8 0.0 50 2-51 60-110 (389)
200 3tix_A Ubiquitin-like protein 96.7 0.0026 9E-08 43.0 4.8 49 34-83 55-105 (207)
201 3uf8_A Ubiquitin-like protein 96.6 0.0038 1.3E-07 42.1 5.4 50 34-83 19-69 (209)
202 2jxx_A Nfatc2-interacting prot 96.5 0.0015 5E-08 39.4 2.2 38 3-40 58-96 (97)
203 2l76_A Nfatc2-interacting prot 96.2 0.0025 8.7E-08 38.2 2.4 42 2-43 51-93 (95)
204 3goe_A DNA repair protein RAD6 95.9 0.02 6.9E-07 33.3 4.9 40 44-83 19-59 (82)
205 3v7o_A Minor nucleoprotein VP3 95.3 0.0028 9.7E-08 43.4 0.0 49 34-83 19-69 (227)
206 2pjh_A Protein NPL4, nuclear p 94.5 0.0052 1.8E-07 35.5 -0.5 39 2-40 34-78 (80)
207 2jxx_A Nfatc2-interacting prot 94.3 0.18 6.2E-06 30.1 6.1 50 34-83 23-75 (97)
208 2al3_A TUG long isoform; TUG U 93.9 0.14 4.9E-06 30.2 5.0 47 37-83 10-58 (90)
209 3ivf_A Talin-1; FERM domain, c 92.2 0.26 9E-06 35.3 5.3 73 8-80 43-132 (371)
210 2kvr_A Ubiquitin carboxyl-term 92.2 0.12 4E-06 32.5 3.0 32 48-79 59-90 (130)
211 2l76_A Nfatc2-interacting prot 91.8 0.88 3E-05 27.1 6.4 50 34-83 19-69 (95)
212 3ix6_A TS, tsase, thymidylate 91.8 0.031 1.1E-06 40.8 0.0 50 34-83 19-69 (360)
213 4da1_A Protein phosphatase 1K, 90.3 0.053 1.8E-06 39.3 0.0 50 34-83 28-78 (389)
214 4eut_A Serine/threonine-protei 89.4 0.35 1.2E-05 34.4 3.7 33 49-81 326-358 (396)
215 2juo_A GA-binding protein alph 88.3 1 3.5E-05 26.3 4.5 42 2-43 23-65 (89)
216 2al3_A TUG long isoform; TUG U 88.2 0.31 1.1E-05 28.8 2.3 42 3-44 41-83 (90)
217 2kc2_A Talin-1, F1; FERM, adhe 87.9 0.66 2.3E-05 29.0 3.8 41 39-79 14-57 (128)
218 1oey_A P67-PHOX, neutrophil cy 85.5 1.6 5.6E-05 25.2 4.4 38 46-83 15-52 (83)
219 2bps_A YUKD protein; ubiquitin 85.5 0.23 7.9E-06 28.7 0.7 29 11-39 51-80 (81)
220 2ylm_A Ubiquitin carboxyl-term 83.6 0.91 3.1E-05 34.4 3.4 32 48-79 39-70 (530)
221 3qx1_A FAS-associated factor 1 82.8 3.8 0.00013 23.0 5.2 45 34-79 5-51 (84)
222 3qa8_A MGC80376 protein; kinas 82.6 0.92 3.2E-05 35.5 3.2 36 48-83 325-360 (676)
223 2dzk_A UBX domain-containing p 74.2 8.1 0.00028 22.9 5.0 45 35-79 12-58 (109)
224 2r2o_A Plexin-B1; effector dom 71.5 5.7 0.00019 25.1 3.9 33 47-79 43-83 (138)
225 1wj4_A KIAA0794 protein; UBX d 70.4 8.4 0.00029 23.5 4.5 44 34-78 41-86 (124)
226 4e71_A Plexin-B2, MM1; transme 67.9 7.8 0.00027 23.5 3.9 33 47-79 26-66 (111)
227 4e74_A Plexin-A4; RBD, structu 62.7 11 0.00038 23.0 3.9 33 47-79 29-69 (117)
228 3h6n_A Plexin-D1; structural g 60.7 13 0.00043 23.2 3.9 33 47-79 19-59 (127)
229 1c1y_B Proto-onkogene serine/t 57.6 19 0.00064 20.4 4.0 44 36-80 3-46 (77)
230 1iqo_A Hypothetical protein MT 55.4 10 0.00035 22.1 2.6 42 17-67 30-72 (88)
231 1wxm_A A-RAF proto-oncogene se 54.0 25 0.00086 20.3 4.2 47 34-81 7-53 (86)
232 2v1y_A Phosphatidylinositol-4, 52.7 22 0.00076 21.4 4.0 37 35-71 18-57 (108)
233 4a3p_A Ubiquitin carboxyl-term 52.5 22 0.00076 23.5 4.4 32 48-79 143-175 (217)
234 3kuz_A Plexin-C1; structural g 50.0 6.5 0.00022 24.4 1.3 17 25-41 108-125 (126)
235 2cr5_A Reproduction 8; UBX dom 48.9 39 0.0013 19.8 4.9 44 35-79 22-67 (109)
236 3ig3_A Plxna3 protein; plexin 47.3 21 0.00072 27.9 4.0 33 47-79 249-289 (627)
237 3jyu_A Ubiquitin carboxyl-term 47.1 30 0.001 23.1 4.4 31 49-79 156-187 (231)
238 2daj_A KIAA0977 protein, COBL- 46.2 42 0.0014 19.5 4.9 50 34-83 8-59 (91)
239 1s3s_G P47 protein; AAA ATPase 46.2 31 0.0011 20.9 4.0 45 35-79 51-98 (127)
240 3hm6_X Plexin-B1; structural g 44.5 36 0.0012 26.7 4.9 33 47-79 276-316 (644)
241 1y8x_B Ubiquitin-activating en 43.8 31 0.0011 20.2 3.6 43 47-91 7-51 (98)
242 1ef1_A Moesin; membrane, FERM 43.1 31 0.0011 23.3 4.1 43 37-79 2-46 (294)
243 1wfy_A Regulator of G-protein 42.0 20 0.00068 21.5 2.5 60 24-83 3-66 (104)
244 3jyu_A Ubiquitin carboxyl-term 40.3 23 0.00078 23.7 2.9 44 3-46 173-224 (231)
245 1wgr_A Growth factor receptor- 40.2 29 0.001 20.5 3.1 37 39-75 12-50 (100)
246 1vd2_A Protein kinase C, IOTA 39.8 54 0.0018 18.9 5.8 48 36-83 6-55 (89)
247 3b64_A Macrophage migration in 37.4 44 0.0015 19.2 3.6 76 3-84 29-104 (112)
248 2l05_A Serine/threonine-protei 37.1 58 0.002 19.1 4.0 34 47-81 30-63 (95)
249 2ylm_A Ubiquitin carboxyl-term 37.0 25 0.00085 26.6 3.0 26 47-72 453-478 (530)
250 1h4r_A Merlin; FERM, neurofibr 34.9 51 0.0018 22.5 4.2 47 34-80 20-68 (314)
251 2os5_A Acemif; macrophage migr 34.0 51 0.0017 19.2 3.6 74 3-83 29-103 (119)
252 3he4_B Synzip5; heterodimeric 32.9 22 0.00075 17.5 1.4 15 54-68 2-16 (46)
253 1wgy_A RAP guanine nucleotide 30.2 62 0.0021 19.2 3.4 32 47-78 22-53 (104)
254 1pqs_A Cell division control p 29.9 34 0.0012 19.1 2.1 36 47-82 4-44 (77)
255 1rrb_A RAF-1 RBD, RAF proto-on 29.4 81 0.0028 18.9 3.8 46 35-81 19-64 (107)
256 3khf_A Microtubule-associated 28.3 16 0.00056 20.4 0.6 18 5-22 50-67 (99)
257 3qij_A Protein 4.1; cytoskelet 28.3 60 0.0021 22.2 3.6 49 34-82 15-66 (296)
258 2c7h_A RBBP6, retinoblastoma-b 28.1 66 0.0022 18.5 3.1 28 52-79 26-53 (86)
259 4gmv_A RAS-associated and plec 27.2 78 0.0027 22.0 4.0 37 47-83 44-80 (281)
260 3au4_A Myosin-X; protein-prote 27.1 70 0.0024 23.9 4.0 46 34-79 214-263 (555)
261 3ny5_A Serine/threonine-protei 25.7 1.1E+02 0.0037 18.0 3.9 46 35-81 14-59 (96)
262 2i1j_A Moesin; FERM, coiled-co 24.5 89 0.003 23.8 4.2 46 36-81 4-51 (575)
263 3ivf_A Talin-1; FERM domain, c 24.0 1.4E+02 0.0046 20.9 4.9 56 37-92 4-64 (371)
264 4gdk_A Ubiquitin-like protein 23.6 1.1E+02 0.0038 17.4 5.0 32 49-80 24-55 (91)
265 3nrb_A Formyltetrahydrofolate 22.9 38 0.0013 23.5 1.7 35 34-68 219-259 (287)
266 2zjd_A Microtubule-associated 21.3 1.5E+02 0.005 18.2 4.0 34 49-82 57-91 (130)
267 3tca_A Amyloid beta A4 precurs 21.1 1.3E+02 0.0045 19.8 4.2 33 47-79 47-79 (291)
268 3o1l_A Formyltetrahydrofolate 20.6 42 0.0014 23.5 1.5 35 34-68 235-275 (302)
269 3hk0_A Growth factor receptor- 20.4 97 0.0033 21.1 3.3 34 47-80 21-54 (256)
No 1
>3rt3_B Ubiquitin-like protein ISG15; ubiquitin-like domain, isgylation, antiviral protein-viral P complex; 2.01A {Homo sapiens} PDB: 3sdl_C 3r66_C 3pse_B 1z2m_A
Probab=99.91 E-value=8e-25 Score=143.33 Aligned_cols=89 Identities=24% Similarity=0.168 Sum_probs=78.2
Q ss_pred CccccCCCCcceEEE-E-CCEEeCCCCCCccceec-ccceeeeee-eecceee------------eeeccchhHHHHHhh
Q 040204 1 IEDKEEILRDQQRFI-F-AGKRLEDGRTLVDYNIH-GSTLHSVRR-FRGGMQI------------FVESSDTIDNVKAKI 64 (97)
Q Consensus 1 i~~~~gip~~~Q~L~-~-~g~~L~d~~tL~~y~I~-~sti~l~i~-~~~g~~i------------~v~~~~TV~~lK~~I 64 (97)
|++.+|+|+++|+|+ | +|+.|+|+.+|++|+|. +++++++.+ +++++.| .|++++||+++|++|
T Consensus 32 I~~~~gip~~~QrL~~~~~g~~L~d~~tL~~y~i~~~~~l~l~~~~~~~~m~i~vk~~~g~~~~~~v~~~~tV~~lK~~i 111 (159)
T 3rt3_B 32 ITQKIGVHAFQQRLAVHPSGVALQDRVPLASQGLGPGSTVLLVVDKSDEPLSILVRNNKGRSSTYEVRLTQTVAHLKQQV 111 (159)
T ss_dssp HHHHHCCCGGGEEEEEETTCCBCCTTSCGGGGTCCTTCEEEEEECCCCCCEEEEEECTTSCEEEEEECTTSBHHHHHHHH
T ss_pred HHHHhCCCHHHEEEEEcCCCCCCCCCCCHHHcCCCCCCEEEEEccCCCCcEEEEEECCCCCEEEEEeCCCCCHHHHHHHH
Confidence 456789999999999 9 89999999999999999 999999998 3555444 448899999999999
Q ss_pred hhhcCCCCCceEEEECeEe--CCCccc
Q 040204 65 QDKKGTPPDQQRQIFWFVF--GWGSLW 89 (97)
Q Consensus 65 ~~~~gip~~~q~Lif~G~~--~~~~~~ 89 (97)
++++|+|+++|+|+|+|++ |..+|-
T Consensus 112 ~~~~gip~~~q~L~~~G~~L~d~~tL~ 138 (159)
T 3rt3_B 112 SGLEGVQDDLFWLTFEGKPLEDQLPLG 138 (159)
T ss_dssp HHHHTCCGGGEEEEETTEECCTTSBGG
T ss_pred HHHHCCCHHHEEEEECCeecCCCCCHH
Confidence 9999999999999999999 545553
No 2
>3u30_A Ubiquitin, linear DI-ubiquitin; immune system; 2.43A {Homo sapiens}
Probab=99.91 E-value=1.1e-24 Score=144.66 Aligned_cols=88 Identities=72% Similarity=0.958 Sum_probs=79.5
Q ss_pred CccccCCCCcceEEEECCEEeCCCCCCccceec-ccceeeeeeeecceeeee------------eccchhHHHHHhhhhh
Q 040204 1 IEDKEEILRDQQRFIFAGKRLEDGRTLVDYNIH-GSTLHSVRRFRGGMQIFV------------ESSDTIDNVKAKIQDK 67 (97)
Q Consensus 1 i~~~~gip~~~Q~L~~~g~~L~d~~tL~~y~I~-~sti~l~i~~~~g~~i~v------------~~~~TV~~lK~~I~~~ 67 (97)
|++++|+|+++|+|+|+|+.|+|+.+|++|+|. +++++++++..+++.++| ++++||.+||++|+++
T Consensus 50 I~~~~gip~~~QrL~~~g~~L~d~~tL~~~~i~~~~~l~l~~~~~gg~~i~Vk~~~g~~~~l~v~~~~tV~~lK~~I~~~ 129 (172)
T 3u30_A 50 IQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDK 129 (172)
T ss_dssp HHHHHCCCGGGEEEEETTEECCTTCBTGGGTCCTTCEEEEEECCCCCEEEEEEESSCCEEEEEECTTCBHHHHHHHHHHH
T ss_pred HHHHHCcChHHEEEEECCccccccCCHhHcCCcccceeeeeecccccccceeecccCcceeEEecCCCCHHHHHHHHHHH
Confidence 456789999999999999999999999999999 999999998887765554 7899999999999999
Q ss_pred cCCCCCceEEEECeEe--CCCcc
Q 040204 68 KGTPPDQQRQIFWFVF--GWGSL 88 (97)
Q Consensus 68 ~gip~~~q~Lif~G~~--~~~~~ 88 (97)
+|+|+++|+|+|+|++ |..+|
T Consensus 130 ~gip~~~q~L~~~g~~L~D~~tL 152 (172)
T 3u30_A 130 EGIPPDQQRLIFAGKQLEDGRTL 152 (172)
T ss_dssp HCCCGGGCCEEETTEECCTTSBS
T ss_pred hCCCceeEEEEECCccCCCCCcH
Confidence 9999999999999999 44555
No 3
>3b08_A Polyubiquitin-C, ubiquitin; protein complex, signaling protein-metal binding protein COM; HET: TRE; 1.70A {Homo sapiens} PDB: 2w9n_A* 3b0a_A* 3axc_A 2zvn_A 2zvo_A 2y5b_B
Probab=99.88 E-value=5.4e-23 Score=132.85 Aligned_cols=89 Identities=71% Similarity=0.935 Sum_probs=78.3
Q ss_pred CccccCCCCcceEEEECCEEeCCCCCCccceec-ccceeeeeeeecceeee------------eeccchhHHHHHhhhhh
Q 040204 1 IEDKEEILRDQQRFIFAGKRLEDGRTLVDYNIH-GSTLHSVRRFRGGMQIF------------VESSDTIDNVKAKIQDK 67 (97)
Q Consensus 1 i~~~~gip~~~Q~L~~~g~~L~d~~tL~~y~I~-~sti~l~i~~~~g~~i~------------v~~~~TV~~lK~~I~~~ 67 (97)
|++++|+|+++|+|+|+|+.|+|+.+|++|+|. +++++++.+..+++.|. +++++||.++|++|+++
T Consensus 30 i~~~~gip~~~q~L~~~g~~L~d~~tL~~~~i~~~~~l~l~~~~~~~~~i~Vk~~~g~~~~~~v~~~~tv~~lK~~i~~~ 109 (152)
T 3b08_A 30 IQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDK 109 (152)
T ss_dssp HHHHHCCCGGGEEEEETTEECCTTSBTGGGTCCTTCEEEEEECCTTCEEEEEEESSSCEEEEEECTTCBHHHHHHHHHHH
T ss_pred HHHHHCcChHHeEEEECCeECcCcccHHHhccCCCCeeEEEeecccccceeeeecCCCEEEEEeCCCCcHHHHHHHHHHH
Confidence 356789999999999999999999999999999 99999998876655444 47899999999999999
Q ss_pred cCCCCCceEEEECeEe--CCCccc
Q 040204 68 KGTPPDQQRQIFWFVF--GWGSLW 89 (97)
Q Consensus 68 ~gip~~~q~Lif~G~~--~~~~~~ 89 (97)
+|+|+++|+|+|+|+. |..+|-
T Consensus 110 ~gi~~~~qrL~~~g~~L~d~~tL~ 133 (152)
T 3b08_A 110 EGIPPDQQRLIFAGKQLEDGRTLS 133 (152)
T ss_dssp HCCCGGGEEEEETTEECCTTSBTG
T ss_pred hCcChhhEEEEECCEECCCCCCHH
Confidence 9999999999999998 445554
No 4
>3plu_A Ubiquitin-like modifier HUB1; ubiquitin-like, HUB-1, SNU66, peptide binding protein; 1.40A {Saccharomyces cerevisiae} PDB: 3plv_A 1m94_A 1p0r_A
Probab=99.53 E-value=1.6e-14 Score=87.56 Aligned_cols=56 Identities=18% Similarity=0.085 Sum_probs=48.9
Q ss_pred ccceeeeeeeecc--eeeeeeccchhHHHHHhhhhhcCCCCCceEEEECeEe--CCCccc
Q 040204 34 GSTLHSVRRFRGG--MQIFVESSDTIDNVKAKIQDKKGTPPDQQRQIFWFVF--GWGSLW 89 (97)
Q Consensus 34 ~sti~l~i~~~~g--~~i~v~~~~TV~~lK~~I~~~~gip~~~q~Lif~G~~--~~~~~~ 89 (97)
...+.+.++...| ..+.++|++||.+||++|++++|+||++|+|+|+|++ |+.+|-
T Consensus 19 ~~mIqI~Vk~~~Gkk~~v~v~p~DTI~~LK~~I~~k~Gip~~qQrLif~Gk~LkD~~TL~ 78 (93)
T 3plu_A 19 SHMIEVVVNDRLGKKVRVKCLGEDSVGDFKKVLSLQIGTQPNKIVLQKGGSVLKDHISLE 78 (93)
T ss_dssp -CEEEEEEECTTSCEEEEEEETTSBHHHHHHHHHHHHTCCGGGEEEEETTEECCTTSBTG
T ss_pred CceEEEEEECCCCCEEEEEECCcCHHHHHHHHHHHHhCCCHHHEEEEeCCEEccCcCCHH
Confidence 5678889988777 4577799999999999999999999999999999999 666663
No 5
>1wju_A NEDD8 ultimate buster-1; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.48 E-value=6.4e-14 Score=86.00 Aligned_cols=49 Identities=12% Similarity=-0.022 Sum_probs=41.6
Q ss_pred cceeeeeeeec--c--eeeeeeccchhHHHHHhhhhhcCCCCCceEEEECeEe
Q 040204 35 STLHSVRRFRG--G--MQIFVESSDTIDNVKAKIQDKKGTPPDQQRQIFWFVF 83 (97)
Q Consensus 35 sti~l~i~~~~--g--~~i~v~~~~TV~~lK~~I~~~~gip~~~q~Lif~G~~ 83 (97)
+|+++..+... + +.+.|++++||.+||++|++++|+||++|+|||+||+
T Consensus 16 ati~V~~~~~~~~~~~~~lev~~~~TV~~lK~kI~~k~gip~~qQrLI~~GKi 68 (100)
T 1wju_A 16 ATIEVFLPPRLKKDRKNLLETRLHITGRELRSKIAETFGLQENYIKIVINKKQ 68 (100)
T ss_dssp EEEEEECCTTTCCSSSEEEEEESSSBHHHHHHHHHHHTTCCSTTCEEEETTEE
T ss_pred EEEEEEecCCCCCCcEEEEEeCCcCHHHHHHHHHHHHHCcCHHHeEEEeCCeE
Confidence 46666554421 2 6788899999999999999999999999999999999
No 6
>1uh6_A Ubiquitin-like 5; beta-grAsp fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.44 E-value=2.9e-13 Score=83.03 Aligned_cols=65 Identities=25% Similarity=0.331 Sum_probs=51.7
Q ss_pred CCCCccceec--ccceeeeeeeecc--eeeeeeccchhHHHHHhhhhhcCCCCCceEEEECeEe--CCCcc
Q 040204 24 GRTLVDYNIH--GSTLHSVRRFRGG--MQIFVESSDTIDNVKAKIQDKKGTPPDQQRQIFWFVF--GWGSL 88 (97)
Q Consensus 24 ~~tL~~y~I~--~sti~l~i~~~~g--~~i~v~~~~TV~~lK~~I~~~~gip~~~q~Lif~G~~--~~~~~ 88 (97)
+.++...+-. ...+.+.++...| +.+.|++++||.+||++|++++|+|+++|||+|+|++ |..+|
T Consensus 14 ~~~~~~~~~~~~~~mm~I~VKtl~Gk~i~lev~p~dTV~~lK~~Ia~k~Gip~~qQrLi~~Gk~L~D~~TL 84 (100)
T 1uh6_A 14 GASLVPRGSEGAATMIEVVCNDRLGKKVRVKCNTDDTIGDLKKLIAAQTGTRWNKIVLKKWYTIFKDHVSL 84 (100)
T ss_dssp CCSSCCCCCSSCCCEEEEEEECSSSSCEEEEEETTSBHHHHHHHHHHHHCCCGGGCEEEETTEECCSSCBH
T ss_pred ccccccccCCCCCCeEEEEEECCCCCEEEEEeCCCCcHHHHHHHHHHHhCCCHHHEEEEECCEECCCCCCH
Confidence 3444445544 3358888887755 6688899999999999999999999999999999999 44443
No 7
>3phx_B Ubiquitin-like protein ISG15; OTU domain, DE-ubiquitinase, DE-isgylase, hydrolase-protein complex; 1.60A {Homo sapiens}
Probab=99.40 E-value=9.4e-14 Score=80.90 Aligned_cols=45 Identities=33% Similarity=0.445 Sum_probs=41.4
Q ss_pred CccccCCCCcceEEEECCEEeCCCCCCccceec-ccceeeeeeeec
Q 040204 1 IEDKEEILRDQQRFIFAGKRLEDGRTLVDYNIH-GSTLHSVRRFRG 45 (97)
Q Consensus 1 i~~~~gip~~~Q~L~~~g~~L~d~~tL~~y~I~-~sti~l~i~~~~ 45 (97)
|++++|+|+++|+|+|+|+.|+|+.+|++|+|. +++++++++..|
T Consensus 34 i~~~~gip~~~qrL~~~G~~L~d~~tL~~~~i~~~~~l~l~~rl~G 79 (79)
T 3phx_B 34 VSGLEGVQDDLFWLTFEGKPLEDQLPLGEYGLKPLSTVFMNLRLRG 79 (79)
T ss_dssp HHHHHTCCGGGEEEEETTEECCTTSBGGGGTCCTTCEEEEEECCBC
T ss_pred HHhhcCCCHHHEEEEECCEECCCCCcHHHCCCCCCCEEEEEEecCC
Confidence 356789999999999999999999999999999 999999998764
No 8
>2uyz_B Small ubiquitin-related modifier 1; sumoylation, cell division, nuclear protein, ubiquitin-like modifier, UBL conjugation pathway; 1.4A {Homo sapiens} SCOP: d.15.1.1 PDB: 2vrr_B 2iy0_B 2iy1_B 2g4d_B 2las_A 2io2_B 1z5s_B 3uip_B* 1tgz_B* 2bf8_B
Probab=99.40 E-value=6.5e-14 Score=81.58 Aligned_cols=46 Identities=20% Similarity=0.444 Sum_probs=42.2
Q ss_pred CccccCCCCcceEEEECCEEeCCCCCCccceec-ccceeeeeeeecc
Q 040204 1 IEDKEEILRDQQRFIFAGKRLEDGRTLVDYNIH-GSTLHSVRRFRGG 46 (97)
Q Consensus 1 i~~~~gip~~~Q~L~~~g~~L~d~~tL~~y~I~-~sti~l~i~~~~g 46 (97)
|++++|+|+++|+|+|+|++|+|++|+++|+|. +++|+++++..||
T Consensus 33 i~~~~gi~~~~qrL~~~G~~L~d~~tl~~~~i~~~~~i~l~~~~~GG 79 (79)
T 2uyz_B 33 YCQRQGVPMNSLRFLFEGQRIADNHTPKELGMEEEDVIEVYQEQTGG 79 (79)
T ss_dssp HHHHHTCCGGGEEEEETTEECCTTCCHHHHTCCTTEEEEEEECCCC-
T ss_pred HHHHHCCCcccEEEEECCEEeCCCCCHHHcCCCCCCEEEEEEeccCC
Confidence 356789999999999999999999999999999 9999999998876
No 9
>2lxa_A Ubiquitin-like protein MDY2; ubiquitin-like domain, protein-protein interaction, SGT2 BIN domain, GET pathway, protein binding; NMR {Saccharomyces cerevisiae}
Probab=99.39 E-value=5.3e-13 Score=79.93 Aligned_cols=52 Identities=17% Similarity=0.114 Sum_probs=43.2
Q ss_pred eeeeeeeecc--eeeeee--ccchhHHHHHhh-hhhcCCCCCceEEEECeEe--CCCcc
Q 040204 37 LHSVRRFRGG--MQIFVE--SSDTIDNVKAKI-QDKKGTPPDQQRQIFWFVF--GWGSL 88 (97)
Q Consensus 37 i~l~i~~~~g--~~i~v~--~~~TV~~lK~~I-~~~~gip~~~q~Lif~G~~--~~~~~ 88 (97)
+.+.++...| +.+.|+ +++||.++|++| ++++|+|+++|+|+|+|++ |..+|
T Consensus 2 mqI~VKtl~g~~~~i~v~v~~~~TV~~lK~~I~~~~~gip~~~QrLi~~Gk~L~D~~tL 60 (87)
T 2lxa_A 2 VHLTLKKIQAPKFSIEHDFSPSDTILQIKQHLISEEKASHISEIKLLLKGKVLHDNLFL 60 (87)
T ss_dssp CEEEEEECSSSCEECCEECCTTCBHHHHHHHHHHTTSCSSSTTEEEEETTEECCTTCBH
T ss_pred EEEEEEcCCCCEEEEEEcCCCCCcHHHHHHHHHHHhcCCChHHEEEEECCEECcCcCCH
Confidence 4567777666 556655 999999999999 9999999999999999999 44444
No 10
>2kdi_A Ubiquitin, vacuolar protein sorting-associated protein 27 fusion protein; ubiquitin interacting motif, UIM, protein domain interface; NMR {Saccharomyces cerevisiae}
Probab=99.38 E-value=2.4e-13 Score=84.96 Aligned_cols=59 Identities=56% Similarity=0.758 Sum_probs=52.1
Q ss_pred CccccCCCCcceEEEECCEEeCCCCCCccceec-ccceeeeeeeecceeeeeeccchhHH
Q 040204 1 IEDKEEILRDQQRFIFAGKRLEDGRTLVDYNIH-GSTLHSVRRFRGGMQIFVESSDTIDN 59 (97)
Q Consensus 1 i~~~~gip~~~Q~L~~~g~~L~d~~tL~~y~I~-~sti~l~i~~~~g~~i~v~~~~TV~~ 59 (97)
|++.+|+|+++|+|+|+|+.|+|+.+|++|+|. +++|+++.+..+|..+++++..++..
T Consensus 39 I~~~~gip~~~qrLi~~Gk~L~D~~tL~~ygI~~gstI~l~~~~~GG~~~~~~~~~~~~g 98 (114)
T 2kdi_A 39 IQDKEGIPPDQQRLIWAGKQLEDGRTLSDYNIQRESTLHLVLRLRGGSMGGAADEEELIR 98 (114)
T ss_dssp HHHHHCCCGGGEEEEETTEECCTTCBTTTTTCCSSCEEEEEECCCSSCCCSSCSSSHHHH
T ss_pred HHHHHCcChHHEEEEECCEECCCCCcHHHCCCCCCCEEEEEEEcCCCceeeccccccccC
Confidence 356789999999999999999999999999999 99999999999998888876555543
No 11
>4ajy_B Transcription elongation factor B polypeptide 2; E3 ubiquitin ligase, transcription factor, hypoxic signaling transcription; 1.73A {Homo sapiens} PDB: 1lqb_A 1vcb_A 2c9w_B 2izv_B 2jz3_B 2xai_C 3dcg_A 3zrc_A* 3zrf_A 3ztc_A* 3ztd_A* 3zun_A* 1lm8_B 4b95_A* 2fnj_B 4b9k_A* 4awj_A*
Probab=99.38 E-value=9.2e-13 Score=82.87 Aligned_cols=52 Identities=19% Similarity=0.068 Sum_probs=42.3
Q ss_pred eeeeeeec-ceeeeeeccchhHHHHHhhhhhcCCCCCceEEEECeEe--CCCccc
Q 040204 38 HSVRRFRG-GMQIFVESSDTIDNVKAKIQDKKGTPPDQQRQIFWFVF--GWGSLW 89 (97)
Q Consensus 38 ~l~i~~~~-g~~i~v~~~~TV~~lK~~I~~~~gip~~~q~Lif~G~~--~~~~~~ 89 (97)
++.++... .+.+.+++++||.+||++|++++|+|+++|||||+|++ |.++|-
T Consensus 4 Fl~Ikr~ktTI~ldve~sdTV~~lK~kI~~~~giPp~qQrLI~~Gk~LeD~kTL~ 58 (118)
T 4ajy_B 4 FLMIRRHKTTIFTDAKESSTVFELKRIVEGILKRPPDEQRLYKDDQLLDDGKTLG 58 (118)
T ss_dssp EEEEEEBTEEEEEEEETTSBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBTT
T ss_pred EEEEecCCEEEEEEcCCCChHHHHHHHHHHHHCCCHHHeEEEeCCeECCCcCCHH
Confidence 34444333 25567899999999999999999999999999999999 666664
No 12
>3phx_B Ubiquitin-like protein ISG15; OTU domain, DE-ubiquitinase, DE-isgylase, hydrolase-protein complex; 1.60A {Homo sapiens}
Probab=99.37 E-value=1.2e-12 Score=76.12 Aligned_cols=54 Identities=19% Similarity=0.093 Sum_probs=46.3
Q ss_pred cceeeeeeeecc--eeeeeeccchhHHHHHhhhhhcCCCCCceEEEECeEe--CCCcc
Q 040204 35 STLHSVRRFRGG--MQIFVESSDTIDNVKAKIQDKKGTPPDQQRQIFWFVF--GWGSL 88 (97)
Q Consensus 35 sti~l~i~~~~g--~~i~v~~~~TV~~lK~~I~~~~gip~~~q~Lif~G~~--~~~~~ 88 (97)
+++.+.++..+| +.+.|++++||+++|++|++++|+|+++|+|+|+|++ |..+|
T Consensus 3 ~~m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~qrL~~~G~~L~d~~tL 60 (79)
T 3phx_B 3 EPLSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTFEGKPLEDQLPL 60 (79)
T ss_dssp CCEEEEEECTTSCEEEEEECTTSBHHHHHHHHHHHHTCCGGGEEEEETTEECCTTSBG
T ss_pred CCEEEEEEeCCCCEEEEEECCcChHHHHHHHHHhhcCCCHHHEEEEECCEECCCCCcH
Confidence 467788887766 5578899999999999999999999999999999998 44444
No 13
>4fbj_B NEDD8; effector-HOST target complex, glutamine deamidase, deamidati bacterial effector, cell cycle-protein binding complex; 1.60A {Homo sapiens} PDB: 4f8c_B
Probab=99.37 E-value=1.6e-13 Score=81.84 Aligned_cols=48 Identities=48% Similarity=0.767 Sum_probs=41.8
Q ss_pred CccccCCCCcceEEEECCEEeCCCCCCccceec-ccceeeeeeeeccee
Q 040204 1 IEDKEEILRDQQRFIFAGKRLEDGRTLVDYNIH-GSTLHSVRRFRGGMQ 48 (97)
Q Consensus 1 i~~~~gip~~~Q~L~~~g~~L~d~~tL~~y~I~-~sti~l~i~~~~g~~ 48 (97)
|++++|+|+++|+|+|+|+.|+|+.+|++|+|. +++++++++..||..
T Consensus 30 I~~~~gip~~~qrLi~~Gk~L~D~~tL~~~~i~~g~~l~l~~rl~Gg~~ 78 (88)
T 4fbj_B 30 VEEKEGIPPQQQRLIYSGKQMNDEKTAADYKILGGSVLHLVLALRGGGG 78 (88)
T ss_dssp HHHHHCCCGGGCEEEETTEECCTTSBTTTTTCCTTCEEEEECBCC----
T ss_pred HHHHHCcChhHEEEEECCeECCCCCcHHHcCCCCCCEEEEEEECCCCCC
Confidence 356789999999999999999999999999999 999999999999853
No 14
>1wyw_B Ubiquitin-like protein SMT3C; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 1y8r_C* 2asq_A 2pe6_B 1a5r_A 2kqs_A 3kyc_D* 3rzw_C
Probab=99.35 E-value=1.6e-13 Score=83.29 Aligned_cols=46 Identities=20% Similarity=0.444 Sum_probs=42.9
Q ss_pred CccccCCCCcceEEEECCEEeCCCCCCccceec-ccceeeeeeeecc
Q 040204 1 IEDKEEILRDQQRFIFAGKRLEDGRTLVDYNIH-GSTLHSVRRFRGG 46 (97)
Q Consensus 1 i~~~~gip~~~Q~L~~~g~~L~d~~tL~~y~I~-~sti~l~i~~~~g 46 (97)
|++++|||+++|+|+|+|++|+|++||++|+|. +++|+++++..||
T Consensus 51 i~~~~gip~~~qrLif~Gk~L~d~~tl~dy~i~~g~~I~l~~~~~GG 97 (97)
T 1wyw_B 51 YCQRQGVPMNSLRFLFEGQRIADNHTPKELGMEEEDVIEVYQEQTGG 97 (97)
T ss_dssp HHHHHTCCGGGEEEEETTEECCTTCCHHHHTCCTTCEEEEEESSSCC
T ss_pred HHHHHCCChhhEEEEECCeEcCCCCCHHHCCCCCCCEEEEEEecCCC
Confidence 356789999999999999999999999999999 9999999998876
No 15
>2fnj_B Transcription elongation factor B polypeptide 2; beta-sandwich, lectin-like, SPRY, protein transport/signaling protein complex; 1.80A {Mus musculus} SCOP: d.15.1.1 PDB: 1lm8_B 1lqb_A 1vcb_A 2c9w_B 2izv_B 2jz3_B 2xai_C 3dcg_A 3zrc_A* 3zrf_A
Probab=99.35 E-value=1.5e-12 Score=81.95 Aligned_cols=42 Identities=19% Similarity=0.124 Sum_probs=38.2
Q ss_pred eeeeeeccchhHHHHHhhhhhcCCCCCceEEEECeEe--CCCcc
Q 040204 47 MQIFVESSDTIDNVKAKIQDKKGTPPDQQRQIFWFVF--GWGSL 88 (97)
Q Consensus 47 ~~i~v~~~~TV~~lK~~I~~~~gip~~~q~Lif~G~~--~~~~~ 88 (97)
+.+.|++++||.+||++|++++|+|+++|||+|+|++ |..+|
T Consensus 14 i~lev~~sdTV~~lK~kI~~~egIP~~qQrLi~~Gk~LeD~~TL 57 (118)
T 2fnj_B 14 IFTDAKESSTVFELKRIVEGILKRPPEEQRLYKDDQLLDDGKTL 57 (118)
T ss_dssp EEEEEETTSBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBH
T ss_pred EEEEeCCcChHHHHHHHHHHHhCCCHHHeEEEECCeECCCCCCH
Confidence 5678899999999999999999999999999999999 55555
No 16
>3plu_A Ubiquitin-like modifier HUB1; ubiquitin-like, HUB-1, SNU66, peptide binding protein; 1.40A {Saccharomyces cerevisiae} PDB: 3plv_A 1m94_A 1p0r_A
Probab=99.35 E-value=2.9e-13 Score=81.98 Aligned_cols=40 Identities=20% Similarity=0.253 Sum_probs=37.9
Q ss_pred CccccCCCCcceEEEECCEEeCCCCCCccceec-ccceeee
Q 040204 1 IEDKEEILRDQQRFIFAGKRLEDGRTLVDYNIH-GSTLHSV 40 (97)
Q Consensus 1 i~~~~gip~~~Q~L~~~g~~L~d~~tL~~y~I~-~sti~l~ 40 (97)
|++++|+|+++|+|+|+|++|+|+.||++|+|+ +++++|.
T Consensus 51 I~~k~Gip~~qQrLif~Gk~LkD~~TL~dY~I~dgstLhL~ 91 (93)
T 3plu_A 51 LSLQIGTQPNKIVLQKGGSVLKDHISLEDYEVHDQTNLELY 91 (93)
T ss_dssp HHHHHTCCGGGEEEEETTEECCTTSBTGGGTCCTTCEEEEE
T ss_pred HHHHhCCCHHHEEEEeCCEEccCcCCHHHcCCCCCCEEEEE
Confidence 467899999999999999999999999999999 9999986
No 17
>1ndd_A NEDD8, protein (ubiquitin-like protein NEDD8); proteolysis, signaling protei; 1.60A {Homo sapiens} SCOP: d.15.1.1 PDB: 1r4m_I 1r4n_I* 1xt9_B 2ko3_A 3gzn_I* 2bkr_B 2nvu_I* 3dqv_A 1bt0_A
Probab=99.34 E-value=3.6e-13 Score=77.26 Aligned_cols=46 Identities=50% Similarity=0.833 Sum_probs=41.2
Q ss_pred CccccCCCCcceEEEECCEEeCCCCCCccceec-ccceeeeeeeecc
Q 040204 1 IEDKEEILRDQQRFIFAGKRLEDGRTLVDYNIH-GSTLHSVRRFRGG 46 (97)
Q Consensus 1 i~~~~gip~~~Q~L~~~g~~L~d~~tL~~y~I~-~sti~l~i~~~~g 46 (97)
|++.+|+|++.|+|+|+|+.|+|+.+|++|+|. +++++++++..||
T Consensus 30 i~~~~~i~~~~q~L~~~g~~L~d~~tL~~~~i~~g~~i~l~~~~~GG 76 (76)
T 1ndd_A 30 VEEKEGIPPQQQRLIYSGKQMNDEKTAADYKILGGSVLHLVLALRGG 76 (76)
T ss_dssp HHHHHCCCGGGEEEEETTEECCTTSBGGGGTCCTTCEEEEEECCC--
T ss_pred HHHHHCcChHHEEEEECCEECCCCCcHHHcCCCCCCEEEEEEeCCCC
Confidence 356789999999999999999999999999999 9999999998876
No 18
>1wju_A NEDD8 ultimate buster-1; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.34 E-value=1.9e-13 Score=83.88 Aligned_cols=44 Identities=16% Similarity=0.266 Sum_probs=38.7
Q ss_pred CccccCCCCcceEEEECCEEeCCCCCCccceec-ccceeeeeeeec
Q 040204 1 IEDKEEILRDQQRFIFAGKRLEDGRTLVDYNIH-GSTLHSVRRFRG 45 (97)
Q Consensus 1 i~~~~gip~~~Q~L~~~g~~L~d~~tL~~y~I~-~sti~l~i~~~~ 45 (97)
|++++|+|+++|+|+|+||+|+|++||++|+|+ +++| ++++..+
T Consensus 49 I~~k~gip~~qQrLI~~GKiL~D~~TL~~y~I~~gsti-~vl~lrg 93 (100)
T 1wju_A 49 IAETFGLQENYIKIVINKKQLQLGKTLEEQGVAHNVKA-MVLELKQ 93 (100)
T ss_dssp HHHHTTCCSTTCEEEETTEECCTTSBHHHHTCCSSEEE-EEECCCC
T ss_pred HHHHHCcCHHHeEEEeCCeECCCCCcHHHcCCCCCCEE-EEEEECC
Confidence 567899999999999999999999999999999 9999 4554443
No 19
>2fnj_B Transcription elongation factor B polypeptide 2; beta-sandwich, lectin-like, SPRY, protein transport/signaling protein complex; 1.80A {Mus musculus} SCOP: d.15.1.1 PDB: 1lm8_B 1lqb_A 1vcb_A 2c9w_B 2izv_B 2jz3_B 2xai_C 3dcg_A 3zrc_A* 3zrf_A
Probab=99.34 E-value=2.2e-13 Score=85.84 Aligned_cols=58 Identities=19% Similarity=0.243 Sum_probs=47.2
Q ss_pred CccccCCCCcceEEEECCEEeCCCCCCccceec--------ccceeeeeeeecc-ee-eeeeccchhHH
Q 040204 1 IEDKEEILRDQQRFIFAGKRLEDGRTLVDYNIH--------GSTLHSVRRFRGG-MQ-IFVESSDTIDN 59 (97)
Q Consensus 1 i~~~~gip~~~Q~L~~~g~~L~d~~tL~~y~I~--------~sti~l~i~~~~g-~~-i~v~~~~TV~~ 59 (97)
|++++|||+++|||+|+|++|+|++||++|||. +++++++++ .+| ++ +.+.+..+-.+
T Consensus 31 I~~~egIP~~qQrLi~~Gk~LeD~~TLsdy~I~~~~a~~q~~stL~L~lr-~~g~fe~l~i~~~s~pp~ 98 (118)
T 2fnj_B 31 VEGILKRPPEEQRLYKDDQLLDDGKTLGECGFTSQTARPQAPATVGLAFR-ADDTFEALRIEPFSSPPE 98 (118)
T ss_dssp HHHHHCCCGGGEEEEETTEECCTTSBHHHHTCCTTTSBTTBCEEEEEEEB-SSSCBCCCCBCCCCCCCC
T ss_pred HHHHhCCCHHHeEEEECCeECCCCCCHHHcCcccccccCCCCCEEEEEec-CCCceeeeEEecCCCCCC
Confidence 467899999999999999999999999999998 689999999 544 43 56655444333
No 20
>3dbh_I NEDD8; cell cycle, activating enzyme, apoptosis, membrane, UBL conjugation pathway, ATP-binding, ligase, nucleotide- binding, polymorphism; 2.85A {Homo sapiens} SCOP: d.15.1.1 PDB: 3dbr_I 3dbl_I
Probab=99.33 E-value=2.4e-13 Score=80.41 Aligned_cols=46 Identities=52% Similarity=0.871 Sum_probs=42.8
Q ss_pred CccccCCCCcceEEEECCEEeCCCCCCccceec-ccceeeeeeeecc
Q 040204 1 IEDKEEILRDQQRFIFAGKRLEDGRTLVDYNIH-GSTLHSVRRFRGG 46 (97)
Q Consensus 1 i~~~~gip~~~Q~L~~~g~~L~d~~tL~~y~I~-~sti~l~i~~~~g 46 (97)
|++++|+|+++|+|+|+|+.|+|+.+|++|+|. +++|+++++..||
T Consensus 42 i~~~~gip~~~qrL~~~G~~L~d~~tL~~~~i~~~~~i~l~~rl~GG 88 (88)
T 3dbh_I 42 VEEKEGIPPQQQRLIYSGKQMNDEKTAADYKILGGSVLHLVLRLRGG 88 (88)
T ss_dssp HHHHHCCCGGGCCEEETTEECCTTSBGGGGTCCTTCEEEECCCCCCC
T ss_pred HHHHHCcCHHHEEEEECCeECCCCCcHHHcCCCCCCEEEEEEeCCCC
Confidence 356789999999999999999999999999999 9999999998876
No 21
>4eew_A Large proline-rich protein BAG6; ubiquitin-like fold, GP78-binding, chaperone; 1.30A {Homo sapiens}
Probab=99.33 E-value=3.3e-12 Score=75.71 Aligned_cols=55 Identities=16% Similarity=0.180 Sum_probs=47.2
Q ss_pred ccceeeeeeeecc--eeeeeeccchhHHHHHhhhhhcCCCCCceEEEECeEe--CCCcc
Q 040204 34 GSTLHSVRRFRGG--MQIFVESSDTIDNVKAKIQDKKGTPPDQQRQIFWFVF--GWGSL 88 (97)
Q Consensus 34 ~sti~l~i~~~~g--~~i~v~~~~TV~~lK~~I~~~~gip~~~q~Lif~G~~--~~~~~ 88 (97)
...+.+.++..+| +.+.|++++||.+||++|++.+|+|+++|+|+|+|+. |..+|
T Consensus 15 ~~~m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~qrLi~~Gk~L~D~~tL 73 (88)
T 4eew_A 15 PDSLEVLVKTLDSQTRTFIVGAQMNVKEFKEHIAASVSIPSEKQRLIYQGRVLQDDKKL 73 (88)
T ss_dssp CCEEEEEEEETTSCEEEEEEETTCBHHHHHHHHHHHHTCCGGGEEEEETTEECCTTSBG
T ss_pred CCeEEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHhCCCHHHEEEEECCEECCCCCcH
Confidence 5668888888666 4578899999999999999999999999999999999 54554
No 22
>4dwf_A HLA-B-associated transcript 3; ubiquitin-like domain, BAT3 protein, PF00240, structural GEN joint center for structural genomics, JCSG; 1.80A {Homo sapiens} PDB: 1wx9_A
Probab=99.32 E-value=3.6e-12 Score=75.82 Aligned_cols=55 Identities=16% Similarity=0.174 Sum_probs=47.2
Q ss_pred cceeeeeeeecc--eeeeeeccchhHHHHHhhhhhcCCCCCceEEEECeEe--CCCccc
Q 040204 35 STLHSVRRFRGG--MQIFVESSDTIDNVKAKIQDKKGTPPDQQRQIFWFVF--GWGSLW 89 (97)
Q Consensus 35 sti~l~i~~~~g--~~i~v~~~~TV~~lK~~I~~~~gip~~~q~Lif~G~~--~~~~~~ 89 (97)
+++.+.++..+| +.+.|++++||.+||++|++++|+|+++|+|+|+|++ |..+|-
T Consensus 4 ~~m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~qrLi~~Gk~L~d~~tL~ 62 (90)
T 4dwf_A 4 DSLEVLVKTLDSQTRTFIVGAQMNVKEFKEHIAASVSIPSEKQRLIYQGRVLQDDKKLQ 62 (90)
T ss_dssp CEEEEEEEETTCCEEEEEEETTCBHHHHHHHHHHHHTCCGGGEEEEETTEECCTTSBGG
T ss_pred cEEEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHhCCCHHHEEEEECCeECCCCCCHH
Confidence 467788888766 5578899999999999999999999999999999999 545554
No 23
>2kan_A Uncharacterized protein AR3433A; ubiquitin fold, alpha+beta, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana}
Probab=99.32 E-value=4.1e-13 Score=81.21 Aligned_cols=47 Identities=21% Similarity=0.244 Sum_probs=43.4
Q ss_pred CccccCCCCcceEEEECCEEeCCC-CCCccceec-ccceeeeeeeecce
Q 040204 1 IEDKEEILRDQQRFIFAGKRLEDG-RTLVDYNIH-GSTLHSVRRFRGGM 47 (97)
Q Consensus 1 i~~~~gip~~~Q~L~~~g~~L~d~-~tL~~y~I~-~sti~l~i~~~~g~ 47 (97)
|++++|+|+++|+|+|+|+.|+|+ .+|++|+|. +++|+|+++..+|-
T Consensus 44 I~~~~gip~~~QrLi~~Gk~L~D~~~tL~~ygI~~gstl~lv~r~~gg~ 92 (94)
T 2kan_A 44 IHIVENTPIKRMQLYYSGIELADDYRNLNEYGITEFSEIVVFLKSINRA 92 (94)
T ss_dssp HHHHSSSCTTTEEEEETTEEECCTTSBHHHHTCCTTEEEEEEECCCSSC
T ss_pred HHHHHCcCHHHEEEEECCEECCCCcccHHHCCCCCCCEEEEEEeCCCCC
Confidence 356789999999999999999999 999999999 99999999998873
No 24
>3n3k_B Ubiquitin; hydrolase, protease, thiol protease, DUB, zinc ribbon, inhibitor, ubiqu acetylation, cytoplasm, isopeptide bond, nucleus; 2.60A {Homo sapiens} SCOP: d.15.1.1
Probab=99.32 E-value=5.5e-13 Score=78.25 Aligned_cols=46 Identities=67% Similarity=0.995 Sum_probs=41.5
Q ss_pred CccccCCCCcceEEEECCEEeCCCCCCccceec-ccceeeeeeeecc
Q 040204 1 IEDKEEILRDQQRFIFAGKRLEDGRTLVDYNIH-GSTLHSVRRFRGG 46 (97)
Q Consensus 1 i~~~~gip~~~Q~L~~~g~~L~d~~tL~~y~I~-~sti~l~i~~~~g 46 (97)
|++.+|+|+++|+|+|+|+.|+|+.+|++|+|+ +++|+++++..+|
T Consensus 33 i~~~~~ip~~~qrL~~~g~~L~d~~tL~~~~i~~~~~i~l~~rl~GG 79 (85)
T 3n3k_B 33 IQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIHNHSALYLLLKLRGG 79 (85)
T ss_dssp HHHHHCCCGGGEEEEETBEECCTTCBTTTTTCCTTCEEEEEECCC--
T ss_pred HHHHHCCCHHHEEEEECCeECCCCCCHHHCCCCCCCEEEEEEeccCC
Confidence 356789999999999999999999999999999 9999999998876
No 25
>4hcn_B Polyubiquitin, ubiquitin; ubiquitin/NEDD8 deamidase, NEDD8, protein binding; 2.60A {Saccharomyces cerevisiae}
Probab=99.32 E-value=5.1e-13 Score=81.11 Aligned_cols=46 Identities=74% Similarity=1.063 Sum_probs=42.9
Q ss_pred CccccCCCCcceEEEECCEEeCCCCCCccceec-ccceeeeeeeecc
Q 040204 1 IEDKEEILRDQQRFIFAGKRLEDGRTLVDYNIH-GSTLHSVRRFRGG 46 (97)
Q Consensus 1 i~~~~gip~~~Q~L~~~g~~L~d~~tL~~y~I~-~sti~l~i~~~~g 46 (97)
|++++|+|+++|+|+|+|+.|+|+.+|++|+|. +++|+++++..||
T Consensus 52 I~~~~gip~~~qrLi~~Gk~L~D~~tL~~~~i~~g~~i~l~~rl~GG 98 (98)
T 4hcn_B 52 IQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 98 (98)
T ss_dssp HHHHHCCCGGGCEEEETTEECCTTCBSGGGTCCTTEEEEEECBCSCC
T ss_pred HHHHhCCChhHEEEEECCEECCCCCcHHHCCCCCCCEEEEEEecCCC
Confidence 356789999999999999999999999999999 9999999998876
No 26
>3a9j_A Ubiquitin; protein complex, cytoplasm, isopeptide bond, metal-binding, zinc; 1.18A {Mus musculus} PDB: 3a1q_B 2znv_B 3a9k_A 3h7p_A 3jsv_A 3dvg_Y 3dvn_Y 3nob_A 2o6v_D* 3jw0_X 3jvz_X 3nhe_B* 1aar_A 1d3z_A 1f9j_A 1fxt_B 1g6j_A 1nbf_C 1cmx_B 1q5w_B ...
Probab=99.31 E-value=8e-13 Score=75.78 Aligned_cols=46 Identities=74% Similarity=1.063 Sum_probs=42.6
Q ss_pred CccccCCCCcceEEEECCEEeCCCCCCccceec-ccceeeeeeeecc
Q 040204 1 IEDKEEILRDQQRFIFAGKRLEDGRTLVDYNIH-GSTLHSVRRFRGG 46 (97)
Q Consensus 1 i~~~~gip~~~Q~L~~~g~~L~d~~tL~~y~I~-~sti~l~i~~~~g 46 (97)
|++.+|+|++.|+|+|+|+.|+|+.+|++|+|. +++++++++..||
T Consensus 30 i~~~~~i~~~~q~L~~~g~~L~d~~tL~~~~i~~g~~i~l~~~~~GG 76 (76)
T 3a9j_A 30 IQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQRESTLHLVLRLRGG 76 (76)
T ss_dssp HHHHHCCCGGGEEEEETTEECCTTCBTGGGTCCTTCEEEEEECCCCC
T ss_pred HHHHHCcCHHHeEEEECCeECCCCCcHHHcCCCCCCEEEEEEeCCCC
Confidence 356789999999999999999999999999999 9999999998876
No 27
>3n3k_B Ubiquitin; hydrolase, protease, thiol protease, DUB, zinc ribbon, inhibitor, ubiqu acetylation, cytoplasm, isopeptide bond, nucleus; 2.60A {Homo sapiens} SCOP: d.15.1.1
Probab=99.31 E-value=4e-12 Score=74.50 Aligned_cols=50 Identities=56% Similarity=0.667 Sum_probs=43.1
Q ss_pred ccceeeeeeeecc--eeeeeeccchhHHHHHhhhhhcCCCCCceEEEECeEe
Q 040204 34 GSTLHSVRRFRGG--MQIFVESSDTIDNVKAKIQDKKGTPPDQQRQIFWFVF 83 (97)
Q Consensus 34 ~sti~l~i~~~~g--~~i~v~~~~TV~~lK~~I~~~~gip~~~q~Lif~G~~ 83 (97)
++++.+.++..+| +.+.|++++||.+||++|++++++|+++|+|+|+|+.
T Consensus 1 gs~m~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~~ip~~~qrL~~~g~~ 52 (85)
T 3n3k_B 1 GSHMRIVVKTLMGRTIILEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQ 52 (85)
T ss_dssp ---CEEEEECGGGCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETBEE
T ss_pred CCeEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCCCHHHEEEEECCeE
Confidence 4678888887766 5677899999999999999999999999999999998
No 28
>2lxa_A Ubiquitin-like protein MDY2; ubiquitin-like domain, protein-protein interaction, SGT2 BIN domain, GET pathway, protein binding; NMR {Saccharomyces cerevisiae}
Probab=99.31 E-value=6.4e-13 Score=79.58 Aligned_cols=42 Identities=19% Similarity=0.293 Sum_probs=39.2
Q ss_pred ccccCCCCcceEEEECCEEeCCCCCCcccee-c-ccceeeeeee
Q 040204 2 EDKEEILRDQQRFIFAGKRLEDGRTLVDYNI-H-GSTLHSVRRF 43 (97)
Q Consensus 2 ~~~~gip~~~Q~L~~~g~~L~d~~tL~~y~I-~-~sti~l~i~~ 43 (97)
++++|+|+++|||+|+|+.|+|+.+|++|+| + +++++++.++
T Consensus 35 ~~~~gip~~~QrLi~~Gk~L~D~~tL~~y~I~~~~stl~v~~~~ 78 (87)
T 2lxa_A 35 SEEKASHISEIKLLLKGKVLHDNLFLSDLKVTPANSTITVMIKP 78 (87)
T ss_dssp HTTSCSSSTTEEEEETTEECCTTCBHHHHCCCGGGCEEEEEECC
T ss_pred HHhcCCChHHEEEEECCEECcCcCCHHHcCCCCCCCEEEEEcCC
Confidence 6778999999999999999999999999999 7 9999998865
No 29
>2faz_A Ubiquitin-like containing PHD and ring finger DOM protein 1; cell cycle, DNA damage, DNA repair, DNA-binding, ligase, Met binding, nuclear protein; 2.00A {Homo sapiens} SCOP: d.15.1.1
Probab=99.31 E-value=8.2e-13 Score=76.58 Aligned_cols=43 Identities=33% Similarity=0.590 Sum_probs=39.8
Q ss_pred CccccCCCCcceEEEECCEEeCCCCCCccceec-ccceeeeeee
Q 040204 1 IEDKEEILRDQQRFIFAGKRLEDGRTLVDYNIH-GSTLHSVRRF 43 (97)
Q Consensus 1 i~~~~gip~~~Q~L~~~g~~L~d~~tL~~y~I~-~sti~l~i~~ 43 (97)
|++++|+|+++|+|+|+|+.|+|+++|++|+|. +++++++.+.
T Consensus 34 i~~~~gip~~~qrL~~~g~~L~d~~tL~~~~i~~g~~i~l~~r~ 77 (78)
T 2faz_A 34 IQELFHVEPGLQRLFYRGKQMEDGHTLFDYEVRLNDTIQLLVRQ 77 (78)
T ss_dssp HHHHHCCCGGGEEEEETTEECCTTCBTTTTTCCTTCEEEEEECC
T ss_pred HHHHHCcChhhEEEEECCEECCCCCCHHHcCCCCCCEEEEEEeC
Confidence 356789999999999999999999999999999 9999999875
No 30
>2l7r_A Ubiquitin-like protein FUBI; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; NMR {Homo sapiens}
Probab=99.30 E-value=3.6e-13 Score=81.19 Aligned_cols=46 Identities=33% Similarity=0.442 Sum_probs=42.9
Q ss_pred CccccCCCCcceEEEECCEEeCCCCCCccceec-ccceeeeeeeecc
Q 040204 1 IEDKEEILRDQQRFIFAGKRLEDGRTLVDYNIH-GSTLHSVRRFRGG 46 (97)
Q Consensus 1 i~~~~gip~~~Q~L~~~g~~L~d~~tL~~y~I~-~sti~l~i~~~~g 46 (97)
|++++|+|+++|+|+|+|+.|+|+.+|++|+|. +++|+++++..||
T Consensus 47 I~~~~gip~~~qrLi~~Gk~L~D~~tL~~y~I~~gstI~lv~rl~GG 93 (93)
T 2l7r_A 47 VASLEGIAPEDQVVLLAGAPLEDEATLGQCGVEALTTLEVAGRMLGG 93 (93)
T ss_dssp HHHHHTCCGGGCEEEETTEECCTTSBHHHHTCCSSCEEEEECCCCCC
T ss_pred HHHHhCcChhHEEEEECCEECCCCCcHHHCCCCCCCEEEEEEecCCC
Confidence 356789999999999999999999999999999 9999999998876
No 31
>4ajy_B Transcription elongation factor B polypeptide 2; E3 ubiquitin ligase, transcription factor, hypoxic signaling transcription; 1.73A {Homo sapiens} PDB: 1lqb_A 1vcb_A 2c9w_B 2izv_B 2jz3_B 2xai_C 3dcg_A 3zrc_A* 3zrf_A 3ztc_A* 3ztd_A* 3zun_A* 1lm8_B 4b95_A* 2fnj_B 4b9k_A* 4awj_A*
Probab=99.30 E-value=9.5e-13 Score=82.81 Aligned_cols=53 Identities=23% Similarity=0.293 Sum_probs=44.3
Q ss_pred CccccCCCCcceEEEECCEEeCCCCCCccceec--------ccceeeeeeeeccee-eeeec
Q 040204 1 IEDKEEILRDQQRFIFAGKRLEDGRTLVDYNIH--------GSTLHSVRRFRGGMQ-IFVES 53 (97)
Q Consensus 1 i~~~~gip~~~Q~L~~~g~~L~d~~tL~~y~I~--------~sti~l~i~~~~g~~-i~v~~ 53 (97)
|++++|||+++|||+|+|+.|+|++||++|||. +++|+++.+..+.++ +.|.|
T Consensus 31 I~~~~giPp~qQrLI~~Gk~LeD~kTL~dy~I~~~ta~~q~~atl~Lvlr~~~~fE~l~i~p 92 (118)
T 4ajy_B 31 VEGILKRPPDEQRLYKDDQLLDDGKTLGECGFTSQTARPQAPATVGLAFRADDTFEALCIEP 92 (118)
T ss_dssp HHHHHCCCGGGEEEEETTEECCTTSBTTTTTCCGGGSBTTBCEEEEEEECCSSCCCCCCBCC
T ss_pred HHHHHCCCHHHeEEEeCCeECCCcCCHHHcCCCcCcccCCCCCEEEEEEecCCCccceEEec
Confidence 467899999999999999999999999999995 469999999755443 55533
No 32
>3k9o_B Ubiquitin, UBB+1; E2-25K, complex structure, ATP-binding, isopeptide BO ligase, nucleotide-binding, UBL conjugation pathway; 1.80A {Homo sapiens} PDB: 2k25_A 2kx0_A
Probab=99.29 E-value=1e-12 Score=78.99 Aligned_cols=50 Identities=66% Similarity=0.907 Sum_probs=42.6
Q ss_pred CccccCCCCcceEEEECCEEeCCCCCCccceec-ccceeeeeeeecceeee
Q 040204 1 IEDKEEILRDQQRFIFAGKRLEDGRTLVDYNIH-GSTLHSVRRFRGGMQIF 50 (97)
Q Consensus 1 i~~~~gip~~~Q~L~~~g~~L~d~~tL~~y~I~-~sti~l~i~~~~g~~i~ 50 (97)
|++.+|+|++.|+|+|+|+.|+|+.+|++|+|. +++|+++++..+|....
T Consensus 31 i~~~~gip~~~qrL~~~G~~L~d~~tL~~~~i~~~~~i~l~~r~~gG~~~~ 81 (96)
T 3k9o_B 31 IQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGYADLR 81 (96)
T ss_dssp HHHHHCCCGGGEEEEETTEECCTTSBTGGGTCCTTCEEEEEECCCC-----
T ss_pred HHhhhCCChhHEEEEECCEECCCCCcHHHcCCCCCCEEEEEEEcCCCCccc
Confidence 356789999999999999999999999999999 99999999999986543
No 33
>1sif_A Ubiquitin; hydrophobic mutants, folding, stability, structural protein; 2.18A {Homo sapiens} SCOP: d.15.1.1
Probab=99.29 E-value=8.1e-13 Score=78.77 Aligned_cols=46 Identities=74% Similarity=1.063 Sum_probs=38.8
Q ss_pred CccccCCCCcceEEEECCEEeCCCCCCccceec-ccceeeeeeeecc
Q 040204 1 IEDKEEILRDQQRFIFAGKRLEDGRTLVDYNIH-GSTLHSVRRFRGG 46 (97)
Q Consensus 1 i~~~~gip~~~Q~L~~~g~~L~d~~tL~~y~I~-~sti~l~i~~~~g 46 (97)
|++++|+|++.|+|+|+|+.|+|+.+|++|+|. +++|+++++..||
T Consensus 39 I~~~~gip~~~qrL~~~Gk~L~D~~tL~~~gi~~g~~i~l~~r~~GG 85 (88)
T 1sif_A 39 IQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 85 (88)
T ss_dssp HHHHHCCCGGGCEEEETTEECCTTSBSGGGTCCTTCEEEEEC-----
T ss_pred HHHHHCcChhhEEEEECCEECCCCCcHHHcCCCCCCEEEEEEeCCCC
Confidence 356789999999999999999999999999999 9999999999887
No 34
>1yx5_B Ubiquitin; proteasome, UIM, hydrolase; NMR {Homo sapiens} SCOP: d.15.1.1 PDB: 1yx6_B
Probab=99.29 E-value=1.3e-12 Score=79.11 Aligned_cols=52 Identities=65% Similarity=0.894 Sum_probs=43.4
Q ss_pred CccccCCCCcceEEEECCEEeCCCCCCccceec-ccceeeeeeeecceeeeee
Q 040204 1 IEDKEEILRDQQRFIFAGKRLEDGRTLVDYNIH-GSTLHSVRRFRGGMQIFVE 52 (97)
Q Consensus 1 i~~~~gip~~~Q~L~~~g~~L~d~~tL~~y~I~-~sti~l~i~~~~g~~i~v~ 52 (97)
|++.+|+|+++|+|+|+|+.|+|+.+|++|+|. +++|+++.+..+|.+++.+
T Consensus 30 I~~~~gi~~~~qrL~~~Gk~L~D~~tL~~~gi~~g~~i~l~~~~~gG~~i~~~ 82 (98)
T 1yx5_B 30 IQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGRDPNSS 82 (98)
T ss_dssp HHHHTCCCGGGEEEEETTEECCTTSBTGGGTCCTTCEEEEEECCCCC------
T ss_pred HHHHHCcChhhEEEEECCEECCCCCCHHHcCCCCCCEEEEEEeCCCCCcCccc
Confidence 356789999999999999999999999999999 9999999999998777653
No 35
>2kk8_A Uncharacterized protein AT4G05270; solution arabidopsis thaliana, uncharacterized putative protein, NESG, structural genomics; NMR {Arabidopsis thaliana}
Probab=99.29 E-value=6.5e-12 Score=74.45 Aligned_cols=50 Identities=24% Similarity=0.223 Sum_probs=44.0
Q ss_pred ccceeeeeeeecc--eeeeeeccchhHHHHHhhhhhcCCCCCceEEEECeEe
Q 040204 34 GSTLHSVRRFRGG--MQIFVESSDTIDNVKAKIQDKKGTPPDQQRQIFWFVF 83 (97)
Q Consensus 34 ~sti~l~i~~~~g--~~i~v~~~~TV~~lK~~I~~~~gip~~~q~Lif~G~~ 83 (97)
-+-+.+.++..+| +.+.|++++||++||++|++++|+|+++|+|+|+|++
T Consensus 8 ~~~~~i~vk~l~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~ 59 (84)
T 2kk8_A 8 HSHMKFLVENLNGSSFELEVDYRDTLLVVKQKIERSQHIPVSKQTLIVDGIV 59 (84)
T ss_dssp CCCEEEEEEETTSCEEEEEECTTSBHHHHHHHHHHHHTCCGGGEEEEETTEE
T ss_pred cCceEEEEEecCCcEEEEEECCCChHHHHHHHHHHHHCcChHHEEEEECCEE
Confidence 3556777777766 5678899999999999999999999999999999998
No 36
>4a20_A Ubiquitin-like protein MDY2; protein binding, GET-pathway, tail-anchored proteins; 1.78A {Saccharomyces cerevisiae} PDB: 2lxc_A 4goc_A
Probab=99.29 E-value=7e-12 Score=76.54 Aligned_cols=55 Identities=16% Similarity=0.114 Sum_probs=45.6
Q ss_pred ccceeeeeeeecc--eee--eeeccchhHHHHHhh-hhhcCCCCCceEEEECeEe--CCCcc
Q 040204 34 GSTLHSVRRFRGG--MQI--FVESSDTIDNVKAKI-QDKKGTPPDQQRQIFWFVF--GWGSL 88 (97)
Q Consensus 34 ~sti~l~i~~~~g--~~i--~v~~~~TV~~lK~~I-~~~~gip~~~q~Lif~G~~--~~~~~ 88 (97)
.+++.+.++..+| +.+ .|++++||.+||++| ++.+|+|+++|+|+|+|++ |..+|
T Consensus 17 ~~~m~I~VKtl~g~~~~i~v~v~~~~TV~~lK~~I~~~~~gip~~~QrLi~~Gk~L~D~~tL 78 (98)
T 4a20_A 17 NAAVHLTLKKIQAPKFSIEHDFSPSDTILQIKQHLISEEKASHISEIKLLLKGKVLHDNLFL 78 (98)
T ss_dssp -CCEEEEEEECSSSCEEEEEEECTTCBHHHHHHHHHHTTSCSCGGGEEEEETTEEECTTCBG
T ss_pred CCCEEEEEEcCCCCEEEEEEecCCCChHHHHHHHHHHHhcCCChhhEEEEECCEECcCcCCH
Confidence 5788899988777 345 446999999999999 8899999999999999998 54554
No 37
>3mtn_B UBA80, ubcep1, ubiquitin variant UBV.21.4; ubiquitin-specific protease activity, hydrolase, ubiquitin B structural genomics consortium, SGC; 2.70A {Homo sapiens} SCOP: d.15.1.1
Probab=99.29 E-value=5.9e-12 Score=73.69 Aligned_cols=50 Identities=54% Similarity=0.678 Sum_probs=44.1
Q ss_pred ccceeeeeeeecc--eeeeeeccchhHHHHHhhhhhcCCCCCceEEEECeEe
Q 040204 34 GSTLHSVRRFRGG--MQIFVESSDTIDNVKAKIQDKKGTPPDQQRQIFWFVF 83 (97)
Q Consensus 34 ~sti~l~i~~~~g--~~i~v~~~~TV~~lK~~I~~~~gip~~~q~Lif~G~~ 83 (97)
++++.+.++..+| +.+.+++++||.+||++|++++++|+++|+|+|+|+.
T Consensus 1 gs~m~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~qrL~~~g~~ 52 (85)
T 3mtn_B 1 GSHMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQ 52 (85)
T ss_dssp --CEEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCEEEETTEE
T ss_pred CCeEEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHHCcChHHEEEEECCEE
Confidence 4778888988776 5677899999999999999999999999999999998
No 38
>2kan_A Uncharacterized protein AR3433A; ubiquitin fold, alpha+beta, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana}
Probab=99.29 E-value=7.7e-12 Score=75.55 Aligned_cols=50 Identities=18% Similarity=0.276 Sum_probs=45.1
Q ss_pred ccceeeeeeeecc-eeeeeeccchhHHHHHhhhhhcCCCCCceEEEECeEe
Q 040204 34 GSTLHSVRRFRGG-MQIFVESSDTIDNVKAKIQDKKGTPPDQQRQIFWFVF 83 (97)
Q Consensus 34 ~sti~l~i~~~~g-~~i~v~~~~TV~~lK~~I~~~~gip~~~q~Lif~G~~ 83 (97)
.+.+.+.++..++ +.+.|++++||.+||++|++++|+|+++|+|+|+|++
T Consensus 13 ~~~~~I~Vk~~~~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~ 63 (94)
T 2kan_A 13 VRKIHVTVKFPSKQFTVEVDRTETVSSLKDKIHIVENTPIKRMQLYYSGIE 63 (94)
T ss_dssp SCCEEEEEECSSCEEEEEECTTCBHHHHHHHHHHHSSSCTTTEEEEETTEE
T ss_pred CCCEEEEEEcCCcEEEEEECCCCcHHHHHHHHHHHHCcCHHHEEEEECCEE
Confidence 4678888887775 5688899999999999999999999999999999998
No 39
>1wy8_A NP95-like ring finger protein, isoform A; ubiquitin-like domain, NP95/ICBP90-like ring finger (NIRF), ubiquitin ligase, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.28 E-value=8.3e-13 Score=78.42 Aligned_cols=47 Identities=28% Similarity=0.473 Sum_probs=43.4
Q ss_pred CccccCCCCcceEEEECCEEeCCCCCCccceec-ccceeeeeeeecce
Q 040204 1 IEDKEEILRDQQRFIFAGKRLEDGRTLVDYNIH-GSTLHSVRRFRGGM 47 (97)
Q Consensus 1 i~~~~gip~~~Q~L~~~g~~L~d~~tL~~y~I~-~sti~l~i~~~~g~ 47 (97)
|++++|+|+++|+|+|+|+.|+|+.+|++|+|. +++|+++++..+|.
T Consensus 39 i~~~~gip~~~qrL~~~gk~L~d~~tL~~~~i~~g~~i~l~~~~~gG~ 86 (89)
T 1wy8_A 39 VWALFDVRPECQRLFYRGKQLENGYTLFDYDVGLNDIIQLLVRPDSGP 86 (89)
T ss_dssp HHHHSCCCTTTEEEEETTEECCSSSBHHHHTCCTTCEEEEEECCCCSS
T ss_pred HHHHHCcChhhEEEEECCeECCCCCCHHHCCCCCCCEEEEEEeCCCCC
Confidence 356789999999999999999999999999999 99999999988873
No 40
>1se9_A Ubiquitin family; ubiquitin-like, cell-free, wheat GERM, structural genomics, protein structure initiative, CESG; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=99.28 E-value=2.7e-12 Score=81.63 Aligned_cols=45 Identities=29% Similarity=0.414 Sum_probs=40.9
Q ss_pred ccccCCCC--cceEEEECCEEeCCCCCCccceec-c------cceeeeeeeecc
Q 040204 2 EDKEEILR--DQQRFIFAGKRLEDGRTLVDYNIH-G------STLHSVRRFRGG 46 (97)
Q Consensus 2 ~~~~gip~--~~Q~L~~~g~~L~d~~tL~~y~I~-~------sti~l~i~~~~g 46 (97)
++++|+|+ ++|||+|+|+.|+|++||++|+|+ + +++||+.+..++
T Consensus 53 ~dkegiP~~~~qQrLIy~GK~LeD~~TLsdy~I~~~~~~~~v~tmhlVlrl~g~ 106 (126)
T 1se9_A 53 REKENGPKTVKEVKLISAGKVLENSKTVKDYRSPVSNLAGAVTTMHVIIQAPVT 106 (126)
T ss_dssp TTCSSSCCSGGGEEEEETTEECCTTSBGGGGSCCTTSCTTCCEEEEEEECCCSS
T ss_pred cccccCCCChhhEEEEECCeECcCCCcHHHcCCCcCCccCCcEEEEEEeccCCc
Confidence 45789996 899999999999999999999999 8 789999998876
No 41
>1wh3_A 59 kDa 2'-5'-oligoadenylate synthetase like protein; P59 OASL, ubiquitin family, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.28 E-value=8.2e-13 Score=78.06 Aligned_cols=47 Identities=32% Similarity=0.417 Sum_probs=43.5
Q ss_pred CccccCCCCcceEEEECCEEeCCCCCCccceec-ccceeeeeeeecce
Q 040204 1 IEDKEEILRDQQRFIFAGKRLEDGRTLVDYNIH-GSTLHSVRRFRGGM 47 (97)
Q Consensus 1 i~~~~gip~~~Q~L~~~g~~L~d~~tL~~y~I~-~sti~l~i~~~~g~ 47 (97)
|++.+|+|+++|+|+|+|+.|+|+.+|++|+|. +++|+++.+..+|.
T Consensus 37 i~~~~gi~~~~qrL~~~Gk~L~d~~tL~~~~i~~g~~i~l~~~~~GG~ 84 (87)
T 1wh3_A 37 IEDQQGLPKKQQQLEFQGQVLQDWLGLGIYGIQDSDTLILSKKKGSGP 84 (87)
T ss_dssp HHHHTCCCTTTEEEEETTEECCSSSBHHHHTCCTTEEEEEEECSCCCS
T ss_pred HHHHhCCChHHEEEEECCEEccCCCCHHHCCCCCCCEEEEEEeccCCC
Confidence 356789999999999999999999999999999 99999999998873
No 42
>2kk8_A Uncharacterized protein AT4G05270; solution arabidopsis thaliana, uncharacterized putative protein, NESG, structural genomics; NMR {Arabidopsis thaliana}
Probab=99.28 E-value=7.4e-13 Score=78.58 Aligned_cols=43 Identities=23% Similarity=0.224 Sum_probs=39.5
Q ss_pred CccccCCCCcceEEEECCEE-eCCCCCCccceec-ccceeeeeee
Q 040204 1 IEDKEEILRDQQRFIFAGKR-LEDGRTLVDYNIH-GSTLHSVRRF 43 (97)
Q Consensus 1 i~~~~gip~~~Q~L~~~g~~-L~d~~tL~~y~I~-~sti~l~i~~ 43 (97)
|++++|+|+++|+|+|+|+. |+|+++|++|+|. +++|++++++
T Consensus 40 I~~~~gip~~~QrLi~~Gk~lL~D~~tL~~y~I~~gs~i~lv~~p 84 (84)
T 2kk8_A 40 IERSQHIPVSKQTLIVDGIVILREDLTVEQCQIVPTSDIQLEVSS 84 (84)
T ss_dssp HHHHHTCCGGGEEEEETTEECCCSSSBHHHHTCCTTSCEEEEECC
T ss_pred HHHHHCcChHHEEEEECCEEecCCcCCHHHcCCCCCCEEEEEEcC
Confidence 45678999999999999999 9999999999999 9999998763
No 43
>4fbj_B NEDD8; effector-HOST target complex, glutamine deamidase, deamidati bacterial effector, cell cycle-protein binding complex; 1.60A {Homo sapiens} PDB: 4f8c_B
Probab=99.28 E-value=6.7e-12 Score=74.75 Aligned_cols=51 Identities=25% Similarity=0.409 Sum_probs=42.7
Q ss_pred eeeeeeecc--eeeeeeccchhHHHHHhhhhhcCCCCCceEEEECeEe--CCCcc
Q 040204 38 HSVRRFRGG--MQIFVESSDTIDNVKAKIQDKKGTPPDQQRQIFWFVF--GWGSL 88 (97)
Q Consensus 38 ~l~i~~~~g--~~i~v~~~~TV~~lK~~I~~~~gip~~~q~Lif~G~~--~~~~~ 88 (97)
.+.++..+| +.+.|++++||++||++|++.+|+|+++|+|+|+|++ |..+|
T Consensus 2 ~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL 56 (88)
T 4fbj_B 2 LIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTA 56 (88)
T ss_dssp EEEEEETTCCEEEEECCTTCBHHHHHHHHHHHHCCCGGGCEEEETTEECCTTSBT
T ss_pred EEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHHCcChhHEEEEECCeECCCCCcH
Confidence 456666555 5677899999999999999999999999999999999 44444
No 44
>3mtn_B UBA80, ubcep1, ubiquitin variant UBV.21.4; ubiquitin-specific protease activity, hydrolase, ubiquitin B structural genomics consortium, SGC; 2.70A {Homo sapiens} SCOP: d.15.1.1
Probab=99.27 E-value=1.3e-12 Score=76.51 Aligned_cols=46 Identities=70% Similarity=0.985 Sum_probs=42.8
Q ss_pred CccccCCCCcceEEEECCEEeCCCCCCccceec-ccceeeeeeeecc
Q 040204 1 IEDKEEILRDQQRFIFAGKRLEDGRTLVDYNIH-GSTLHSVRRFRGG 46 (97)
Q Consensus 1 i~~~~gip~~~Q~L~~~g~~L~d~~tL~~y~I~-~sti~l~i~~~~g 46 (97)
|++++|+|+++|+|+|+|+.|+|+.+|++|+|. +++++++++..+|
T Consensus 33 i~~~~~i~~~~qrL~~~g~~L~d~~tL~~~~i~~~~~l~l~~r~~GG 79 (85)
T 3mtn_B 33 IQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKWSTLFLLLRLRGG 79 (85)
T ss_dssp HHHHHCCCGGGCEEEETTEECCTTSBTGGGTCCTTCEEEEECCCCCC
T ss_pred HHHHHCcChHHEEEEECCEECCCCCCHHHcCCCCCCEEEEEEECcCC
Confidence 356789999999999999999999999999999 9999999998876
No 45
>1wgh_A Ubiquitin-like 3, HCG-1 protein; ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.27 E-value=1.8e-11 Score=76.87 Aligned_cols=60 Identities=15% Similarity=0.275 Sum_probs=47.9
Q ss_pred cceecccceeeeeeeecc--eeeeeeccchhHHHHHhhhh------hcCC--CCCceEEEECeEe--CCCcc
Q 040204 29 DYNIHGSTLHSVRRFRGG--MQIFVESSDTIDNVKAKIQD------KKGT--PPDQQRQIFWFVF--GWGSL 88 (97)
Q Consensus 29 ~y~I~~sti~l~i~~~~g--~~i~v~~~~TV~~lK~~I~~------~~gi--p~~~q~Lif~G~~--~~~~~ 88 (97)
.+.+....+.+.++...| +.+.|++++||.+||++|++ ++|+ |+++|||||+||+ |..+|
T Consensus 9 ~~~~~~~~m~I~vKtl~G~t~~lev~~s~TV~~lK~kI~~~~p~dwke~~p~p~~qqrLIy~GK~LeD~~TL 80 (116)
T 1wgh_A 9 SSHVPADMINLRLILVSGKTKEFLFSPNDSASDIAKHVYDNWPMDWEEEQVSSPNILRLIYQGRFLHGNVTL 80 (116)
T ss_dssp CCCCCSSSEEEEEECSSSCEEEEEECTTCBHHHHHHHHHHSSSCCSSCCCCCCTTTEEEEETTEEECSSCBT
T ss_pred cCCCCCCeEEEEEEeCCCCEEEEEECCcCHHHHHHHHHHHhcccccccCCCCChHHEEEEECCcCCCCCCcH
Confidence 344445578888887666 56888999999999999999 7785 6999999999999 44443
No 46
>2hj8_A Interferon-induced 17 kDa protein; HR2873B, human ISG15, structure, northeast structural genomics consortium, protein structure initiative, NESG; NMR {Homo sapiens}
Probab=99.27 E-value=4.5e-13 Score=79.85 Aligned_cols=47 Identities=34% Similarity=0.492 Sum_probs=39.8
Q ss_pred CccccCCCCcceEEEECCEEeCCCCCCccceec-ccceeeeeeeecce
Q 040204 1 IEDKEEILRDQQRFIFAGKRLEDGRTLVDYNIH-GSTLHSVRRFRGGM 47 (97)
Q Consensus 1 i~~~~gip~~~Q~L~~~g~~L~d~~tL~~y~I~-~sti~l~i~~~~g~ 47 (97)
|++.+|+|+++|+|+|+|+.|+|+.+|++|+|. +++|+++.+..+|.
T Consensus 34 I~~~~gip~~~qrL~~~Gk~L~D~~tL~~~~I~~g~~i~l~~~~~gg~ 81 (88)
T 2hj8_A 34 VSGLEGVQDDLFWLTFEGKPLEDQLPLGEYGLKPLSTVFMNLRLRGGL 81 (88)
T ss_dssp HHHHTCSCTTTEEEESSSSCCCTTSBHHHHHCSTTCEEEEEEC-----
T ss_pred HHHHhCCChhHEEEEECCEECCCCCcHHHcCCCCCCEEEEEEEcCCCc
Confidence 356789999999999999999999999999999 99999999988874
No 47
>3vdz_A Ubiquitin-40S ribosomal protein S27A; gadolinium, MRI contrast agent, peptide-based contrast agent lanthanide binding TAG; 2.40A {Synthetic construct} PDB: 2ojr_A
Probab=99.27 E-value=1.7e-12 Score=80.56 Aligned_cols=46 Identities=74% Similarity=1.063 Sum_probs=42.2
Q ss_pred CccccCCCCcceEEEECCEEeCCCCCCccceec-ccceeeeeeeecc
Q 040204 1 IEDKEEILRDQQRFIFAGKRLEDGRTLVDYNIH-GSTLHSVRRFRGG 46 (97)
Q Consensus 1 i~~~~gip~~~Q~L~~~g~~L~d~~tL~~y~I~-~sti~l~i~~~~g 46 (97)
|++++|+|+++|+|+|+|+.|+|+.+|++|+|. +++|+++++..||
T Consensus 65 I~~~~gip~~~QrLi~~Gk~L~D~~tL~~~gI~~gs~I~l~~rl~GG 111 (111)
T 3vdz_A 65 IQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 111 (111)
T ss_dssp HHHHHCCCGGGEEEEETTEECCTTSBTTTTTCCTTCEEEEEECCCC-
T ss_pred HHHHhCCChHHEEEEECCEECCCCCcHHHCCCCCCCEEEEEEecCCC
Confidence 356789999999999999999999999999999 9999999998876
No 48
>3dbh_I NEDD8; cell cycle, activating enzyme, apoptosis, membrane, UBL conjugation pathway, ATP-binding, ligase, nucleotide- binding, polymorphism; 2.85A {Homo sapiens} SCOP: d.15.1.1 PDB: 3dbr_I 3dbl_I
Probab=99.26 E-value=7.7e-12 Score=73.78 Aligned_cols=55 Identities=25% Similarity=0.448 Sum_probs=47.3
Q ss_pred ccceeeeeeeecc--eeeeeeccchhHHHHHhhhhhcCCCCCceEEEECeEe--CCCcc
Q 040204 34 GSTLHSVRRFRGG--MQIFVESSDTIDNVKAKIQDKKGTPPDQQRQIFWFVF--GWGSL 88 (97)
Q Consensus 34 ~sti~l~i~~~~g--~~i~v~~~~TV~~lK~~I~~~~gip~~~q~Lif~G~~--~~~~~ 88 (97)
++++.+.++..+| +.+.|++++||.+||++|++.+|+|+++|+|+|+|+. |..+|
T Consensus 10 ~~~m~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~qrL~~~G~~L~d~~tL 68 (88)
T 3dbh_I 10 GGSMLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDEKTA 68 (88)
T ss_dssp CCCEEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCCEEETTEECCTTSBG
T ss_pred CCcEEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHHCcCHHHEEEEECCeECCCCCcH
Confidence 5678888887666 5678899999999999999999999999999999998 44444
No 49
>3rt3_B Ubiquitin-like protein ISG15; ubiquitin-like domain, isgylation, antiviral protein-viral P complex; 2.01A {Homo sapiens} PDB: 3sdl_C 3r66_C 3pse_B 1z2m_A
Probab=99.26 E-value=1.6e-12 Score=84.51 Aligned_cols=47 Identities=34% Similarity=0.448 Sum_probs=41.7
Q ss_pred CccccCCCCcceEEEECCEEeCCCCCCccceec-ccceeeeeeeecce
Q 040204 1 IEDKEEILRDQQRFIFAGKRLEDGRTLVDYNIH-GSTLHSVRRFRGGM 47 (97)
Q Consensus 1 i~~~~gip~~~Q~L~~~g~~L~d~~tL~~y~I~-~sti~l~i~~~~g~ 47 (97)
|++++|+|+++|+|+|+|+.|+|+.+|++|+|+ +++++++++..||.
T Consensus 111 i~~~~gip~~~q~L~~~G~~L~d~~tL~~y~i~~g~~l~l~~rl~GG~ 158 (159)
T 3rt3_B 111 VSGLEGVQDDLFWLTFEGKPLEDQLPLGEYGLKPLSTVFMNLRLRGGG 158 (159)
T ss_dssp HHHHHTCCGGGEEEEETTEECCTTSBGGGGTCCTTCEEEEEECCC---
T ss_pred HHHHHCCCHHHEEEEECCeecCCCCCHHHcCCCCCCEEEEEEecCCCC
Confidence 356789999999999999999999999999999 99999999998873
No 50
>1wgd_A Homocysteine-responsive endoplasmic reticulum- resident ubiquitin-like domain member...; ENDPLASMIC reticulum stress, UBL domain; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.26 E-value=1.2e-12 Score=78.66 Aligned_cols=45 Identities=29% Similarity=0.375 Sum_probs=41.5
Q ss_pred cccc--CCCCcceEEEECCEEeCCCCCCccc--eec-ccceeeeeeeecc
Q 040204 2 EDKE--EILRDQQRFIFAGKRLEDGRTLVDY--NIH-GSTLHSVRRFRGG 46 (97)
Q Consensus 2 ~~~~--gip~~~Q~L~~~g~~L~d~~tL~~y--~I~-~sti~l~i~~~~g 46 (97)
++++ |+|+++|+|+|+|+.|+|+.+|++| +|. +++|||+++..+|
T Consensus 40 ~~~~~~~i~~~~QrLi~~Gk~L~D~~tL~~~~~~i~~~~~i~lv~~~~gg 89 (93)
T 1wgd_A 40 SRVYPERPRPEDQRLIYSGKLLLDHQCLRDLLPKQEKRHVLHLVCNVKSG 89 (93)
T ss_dssp HHHSTTCCCTTTCEEEETTEECCSSSCHHHHSCSSSCSEEEEEECCCCCC
T ss_pred HHHhcCCCChHHeEEEECCEECcCcCCHHHHhcCCCCCCEEEEEeCCCCC
Confidence 4455 9999999999999999999999999 999 9999999998876
No 51
>3v6c_B Ubiquitin; structural genomics, structural genomics consortium, SGC, UB protease, hydrolase-signaling protein complex; 1.70A {Homo sapiens} PDB: 3v6e_B
Probab=99.25 E-value=1.2e-11 Score=73.87 Aligned_cols=55 Identities=47% Similarity=0.559 Sum_probs=47.6
Q ss_pred ccceeeeeeeecc--eeeeeeccchhHHHHHhhhhhcCCCCCceEEEECeEe--CCCcc
Q 040204 34 GSTLHSVRRFRGG--MQIFVESSDTIDNVKAKIQDKKGTPPDQQRQIFWFVF--GWGSL 88 (97)
Q Consensus 34 ~sti~l~i~~~~g--~~i~v~~~~TV~~lK~~I~~~~gip~~~q~Lif~G~~--~~~~~ 88 (97)
...+.+.++..+| +.+.|++++||.+||++|++.+|+|+++|+|+|+|+. |..+|
T Consensus 15 ~~~m~i~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~Gk~L~D~~tL 73 (91)
T 3v6c_B 15 RGSMQIFVNTLTGTHITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL 73 (91)
T ss_dssp CCSEEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCEEEETTEECCTTCBT
T ss_pred CCeEEEEEEeCCCCEEEEEECCCCCHHHHHHHHHhhhCCChhhEEEEECCeECCCcCcH
Confidence 6688888887776 5577899999999999999999999999999999998 44444
No 52
>3v6c_B Ubiquitin; structural genomics, structural genomics consortium, SGC, UB protease, hydrolase-signaling protein complex; 1.70A {Homo sapiens} PDB: 3v6e_B
Probab=99.25 E-value=1.8e-12 Score=77.48 Aligned_cols=43 Identities=72% Similarity=0.999 Sum_probs=39.9
Q ss_pred CccccCCCCcceEEEECCEEeCCCCCCccceec-ccceeeeeee
Q 040204 1 IEDKEEILRDQQRFIFAGKRLEDGRTLVDYNIH-GSTLHSVRRF 43 (97)
Q Consensus 1 i~~~~gip~~~Q~L~~~g~~L~d~~tL~~y~I~-~sti~l~i~~ 43 (97)
|++.+|+|+++|+|+|+|+.|+|+.+|++|||. +++|+++++.
T Consensus 47 I~~~~gip~~~qrL~~~Gk~L~D~~tL~~~gi~~g~~i~l~~rl 90 (91)
T 3v6c_B 47 IQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRL 90 (91)
T ss_dssp HHHHHCCCGGGCEEEETTEECCTTCBTGGGTCCTTCEEEEECCC
T ss_pred HHhhhCCChhhEEEEECCeECCCcCcHHHCCCCCCCEEEEEEec
Confidence 356789999999999999999999999999999 9999999875
No 53
>2uyz_B Small ubiquitin-related modifier 1; sumoylation, cell division, nuclear protein, ubiquitin-like modifier, UBL conjugation pathway; 1.4A {Homo sapiens} SCOP: d.15.1.1 PDB: 2vrr_B 2iy0_B 2iy1_B 2g4d_B 2las_A 2io2_B 1z5s_B 3uip_B* 1tgz_B* 2bf8_B
Probab=99.25 E-value=1.1e-11 Score=71.96 Aligned_cols=48 Identities=13% Similarity=0.123 Sum_probs=42.6
Q ss_pred ceeeeeeeecc--eeeeeeccchhHHHHHhhhhhcCCCCCceEEEECeEe
Q 040204 36 TLHSVRRFRGG--MQIFVESSDTIDNVKAKIQDKKGTPPDQQRQIFWFVF 83 (97)
Q Consensus 36 ti~l~i~~~~g--~~i~v~~~~TV~~lK~~I~~~~gip~~~q~Lif~G~~ 83 (97)
.+.+.++...| +.+.|++++||.+||++|++++|+|+++|+|+|+|++
T Consensus 3 ~m~i~vk~~~g~~~~~~v~~~~tv~~lk~~i~~~~gi~~~~qrL~~~G~~ 52 (79)
T 2uyz_B 3 YIKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFEGQR 52 (79)
T ss_dssp EEEEEEECTTCCEEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEEETTEE
T ss_pred eEEEEEECCCCCEEEEEECCCChHHHHHHHHHHHHCCCcccEEEEECCEE
Confidence 46677776665 5578899999999999999999999999999999998
No 54
>4a20_A Ubiquitin-like protein MDY2; protein binding, GET-pathway, tail-anchored proteins; 1.78A {Saccharomyces cerevisiae} PDB: 2lxc_A 4goc_A
Probab=99.25 E-value=3.5e-12 Score=77.89 Aligned_cols=43 Identities=19% Similarity=0.288 Sum_probs=39.5
Q ss_pred ccccCCCCcceEEEECCEEeCCCCCCcccee-c-ccceeeeeeee
Q 040204 2 EDKEEILRDQQRFIFAGKRLEDGRTLVDYNI-H-GSTLHSVRRFR 44 (97)
Q Consensus 2 ~~~~gip~~~Q~L~~~g~~L~d~~tL~~y~I-~-~sti~l~i~~~ 44 (97)
++.+|+|+++|||+|+|+.|+|+.+|++|+| + +++|+++++.+
T Consensus 53 ~~~~gip~~~QrLi~~Gk~L~D~~tL~dy~I~~~g~ti~lmvskp 97 (98)
T 4a20_A 53 SEEKASHISEIKLLLKGKVLHDNLFLSDLKVTPANSTITVMIKPN 97 (98)
T ss_dssp HTTSCSCGGGEEEEETTEEECTTCBGGGSCCBTTBCEEEEEECCC
T ss_pred HHhcCCChhhEEEEECCEECcCcCCHHHcCcCCCCCEEEEEEeCC
Confidence 5678999999999999999999999999999 8 99999998643
No 55
>2hj8_A Interferon-induced 17 kDa protein; HR2873B, human ISG15, structure, northeast structural genomics consortium, protein structure initiative, NESG; NMR {Homo sapiens}
Probab=99.25 E-value=1e-11 Score=73.93 Aligned_cols=49 Identities=18% Similarity=0.120 Sum_probs=43.2
Q ss_pred cceeeeeeeecc--eeeeeeccchhHHHHHhhhhhcCCCCCceEEEECeEe
Q 040204 35 STLHSVRRFRGG--MQIFVESSDTIDNVKAKIQDKKGTPPDQQRQIFWFVF 83 (97)
Q Consensus 35 sti~l~i~~~~g--~~i~v~~~~TV~~lK~~I~~~~gip~~~q~Lif~G~~ 83 (97)
+.+.+.++...| +.+.|++++||++||++|++.+|+|+++|+|+|+|+.
T Consensus 3 ~~m~I~Vk~~~g~~~~~~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~Gk~ 53 (88)
T 2hj8_A 3 EPLSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTFEGKP 53 (88)
T ss_dssp CEEEEEEEETTSCEEEEEEESSSBHHHHHHHHHHHTCSCTTTEEEESSSSC
T ss_pred ccEEEEEECCCCCEEEEEECCCCcHHHHHHHHHHHhCCChhHEEEEECCEE
Confidence 457778887655 5578899999999999999999999999999999998
No 56
>3b1l_X E3 ubiquitin-protein ligase parkin; proteasome, ALFA-beta-protein; 1.85A {Mus musculus} PDB: 1mg8_A 2zeq_A 2knb_A 1iyf_A
Probab=98.90 E-value=6.1e-13 Score=76.72 Aligned_cols=45 Identities=33% Similarity=0.508 Sum_probs=41.8
Q ss_pred CccccCCCCcceEEEECCEEeCCCCCCccceec-ccceeeeeeeec
Q 040204 1 IEDKEEILRDQQRFIFAGKRLEDGRTLVDYNIH-GSTLHSVRRFRG 45 (97)
Q Consensus 1 i~~~~gip~~~Q~L~~~g~~L~d~~tL~~y~I~-~sti~l~i~~~~ 45 (97)
|++.+|+|++.|+|+|+|+.|+|+.+|++|+|. +++++++++.+|
T Consensus 30 i~~~~gi~~~~qrL~~~gk~L~d~~tL~~~~i~~g~~i~l~~rlrg 75 (76)
T 3b1l_X 30 VAKQQGVPADQLRVIFAGKELPNHLTVQNCDLEQQSIVHIVQRPRR 75 (76)
Confidence 467789999999999999999999999999999 999999998765
No 57
>4hcn_B Polyubiquitin, ubiquitin; ubiquitin/NEDD8 deamidase, NEDD8, protein binding; 2.60A {Saccharomyces cerevisiae}
Probab=99.25 E-value=1.1e-11 Score=75.06 Aligned_cols=55 Identities=51% Similarity=0.623 Sum_probs=46.5
Q ss_pred ccceeeeeeeecc--eeeeeeccchhHHHHHhhhhhcCCCCCceEEEECeEe--CCCcc
Q 040204 34 GSTLHSVRRFRGG--MQIFVESSDTIDNVKAKIQDKKGTPPDQQRQIFWFVF--GWGSL 88 (97)
Q Consensus 34 ~sti~l~i~~~~g--~~i~v~~~~TV~~lK~~I~~~~gip~~~q~Lif~G~~--~~~~~ 88 (97)
+..+.+.++..+| +.+.|++++||.+||++|++++|+|+++|+|+|+|+. |..+|
T Consensus 20 ~~~m~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL 78 (98)
T 4hcn_B 20 GRPMQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTL 78 (98)
T ss_dssp --CCEEEEEETTCCEEEEECCTTCBHHHHHHHHHHHHCCCGGGCEEEETTEECCTTCBS
T ss_pred CCeEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHhCCChhHEEEEECCEECCCCCcH
Confidence 6788999987776 5677899999999999999999999999999999998 44444
No 58
>1we7_A SF3A1 protein; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 1zkh_A
Probab=99.25 E-value=1.9e-12 Score=80.70 Aligned_cols=47 Identities=23% Similarity=0.461 Sum_probs=43.6
Q ss_pred CccccCCCCcceEEEECCEEeCCCCCCccceec-ccceeeeeeeecce
Q 040204 1 IEDKEEILRDQQRFIFAGKRLEDGRTLVDYNIH-GSTLHSVRRFRGGM 47 (97)
Q Consensus 1 i~~~~gip~~~Q~L~~~g~~L~d~~tL~~y~I~-~sti~l~i~~~~g~ 47 (97)
|++.+|+|+++|+|+|+|+.|+|+.+|++|+|. +++|+++++..+|.
T Consensus 65 I~~~~gip~~~QrL~~~Gk~L~D~~tL~~y~i~~g~~i~lv~rl~GGk 112 (115)
T 1we7_A 65 IHEATGMPAGKQKLQYEGIFIKDSNSLAYYNMASGAVIHLALKERSGP 112 (115)
T ss_dssp HHHHSSCCTTTEEEEETTEEECTTSBHHHHTCCSSCEEEEEECCCSCC
T ss_pred HHHHHCCChHHEEEEECCEECCCCCCHHHCCCCCCCEEEEEEEcCCCC
Confidence 356789999999999999999999999999999 99999999998873
No 59
>1uh6_A Ubiquitin-like 5; beta-grAsp fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.24 E-value=1.2e-12 Score=80.28 Aligned_cols=41 Identities=22% Similarity=0.178 Sum_probs=38.2
Q ss_pred CccccCCCCcceEEEECCEEeCCCCCCccceec-ccceeeee
Q 040204 1 IEDKEEILRDQQRFIFAGKRLEDGRTLVDYNIH-GSTLHSVR 41 (97)
Q Consensus 1 i~~~~gip~~~Q~L~~~g~~L~d~~tL~~y~I~-~sti~l~i 41 (97)
|++++|+|+++|+|+|+|++|+|+.+|++|+|. +++|+|..
T Consensus 58 Ia~k~Gip~~qQrLi~~Gk~L~D~~TL~dygI~~gstlhL~~ 99 (100)
T 1uh6_A 58 IAAQTGTRWNKIVLKKWYTIFKDHVSLGDYEIHDGMNLELYY 99 (100)
T ss_dssp HHHHHCCCGGGCEEEETTEECCSSCBHHHHTCCTTEEEEEEC
T ss_pred HHHHhCCCHHHEEEEECCEECCCCCCHHHcCCCCCCEEEEEe
Confidence 467899999999999999999999999999999 99999863
No 60
>3m63_B Ubiquitin domain-containing protein DSK2; armadillo-like repeats, UBL conjugation pathway, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=99.24 E-value=7.1e-12 Score=76.66 Aligned_cols=64 Identities=22% Similarity=0.288 Sum_probs=41.8
Q ss_pred CCCCccceec-cc--------ceeeeeeeecc--eeeeeeccchhHHHHHhhhhhcCCCCCceEEEECeEe--CCCcc
Q 040204 24 GRTLVDYNIH-GS--------TLHSVRRFRGG--MQIFVESSDTIDNVKAKIQDKKGTPPDQQRQIFWFVF--GWGSL 88 (97)
Q Consensus 24 ~~tL~~y~I~-~s--------ti~l~i~~~~g--~~i~v~~~~TV~~lK~~I~~~~gip~~~q~Lif~G~~--~~~~~ 88 (97)
..++++|.|. -. .+.+.++. +| +.+.|++++||++||++|++++|+|+++|+|+|+|++ |..+|
T Consensus 7 ~~~~~~~~~~~t~~l~l~~~m~i~I~Vk~-~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL 83 (101)
T 3m63_B 7 HHPMSDYDIPTTENLYFQGAMSLNIHIKS-GQDKWEVNVAPESTVLQFKEAINKANGIPVANQRLIYSGKILKDDQTV 83 (101)
T ss_dssp ----------------------CCEEEEC-SSCCCCBCCCTTSBHHHHHHHHHHHHSCCSTTCCEEETTEECCTTSBT
T ss_pred cCCccccCCCcceeecccCCcEEEEEEEE-CCEEEEEEeCCCCCHHHHHHHHHHHHCcChHHEEEEECCEECCCcCcH
Confidence 4567778775 22 34455554 44 5577899999999999999999999999999999998 43444
No 61
>3l0w_B Monoubiquitinated proliferating cell nuclear antigen, proliferating cell nuclear antigen; replication, DNA damage, DNA repair; 2.80A {Saccharomyces cerevisiae} PDB: 3l10_B
Probab=99.23 E-value=3.4e-12 Score=84.58 Aligned_cols=47 Identities=72% Similarity=1.016 Sum_probs=42.4
Q ss_pred CccccCCCCcceEEEECCEEeCCCCCCccceec-ccceeeeeeeecce
Q 040204 1 IEDKEEILRDQQRFIFAGKRLEDGRTLVDYNIH-GSTLHSVRRFRGGM 47 (97)
Q Consensus 1 i~~~~gip~~~Q~L~~~g~~L~d~~tL~~y~I~-~sti~l~i~~~~g~ 47 (97)
|++++|+|+++|+|+|+|+.|+|+++|++|+|+ ++++|++++..+|.
T Consensus 30 I~~~~gip~~~QrLi~~Gk~L~D~~tL~~y~I~~gstI~Lvlrl~GG~ 77 (169)
T 3l0w_B 30 IQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGG 77 (169)
T ss_dssp HHHHHCCCTTTEEEEETTEECCTTSBGGGGTCCTTCEEEEEECCCC--
T ss_pred HHHHHCcCHHHEEEEECCccccCcCcHHHcCCCCCCEEEEEEEecccc
Confidence 356789999999999999999999999999999 99999999988773
No 62
>1se9_A Ubiquitin family; ubiquitin-like, cell-free, wheat GERM, structural genomics, protein structure initiative, CESG; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=99.23 E-value=1.7e-11 Score=77.90 Aligned_cols=55 Identities=15% Similarity=0.186 Sum_probs=46.1
Q ss_pred ccceeeeeeeecc--e-eeeeeccchhHHHHHhh-----hhhcCCCC--CceEEEECeEe--CCCcc
Q 040204 34 GSTLHSVRRFRGG--M-QIFVESSDTIDNVKAKI-----QDKKGTPP--DQQRQIFWFVF--GWGSL 88 (97)
Q Consensus 34 ~sti~l~i~~~~g--~-~i~v~~~~TV~~lK~~I-----~~~~gip~--~~q~Lif~G~~--~~~~~ 88 (97)
...+.+.++...| + .+.+++++||.+||++| ++++|+|+ ++|||||+||+ |..+|
T Consensus 14 ~~~~~i~~kt~~G~~i~~l~v~psdTV~~lK~kI~~~~p~dkegiP~~~~qQrLIy~GK~LeD~~TL 80 (126)
T 1se9_A 14 HNQLEIKFRLTDGSDIGPKAFPDATTVSALKETVISEWPREKENGPKTVKEVKLISAGKVLENSKTV 80 (126)
T ss_dssp CCCEEEEEEETTSCEEEEEEECTTCBHHHHHHHHHHHSCTTCSSSCCSGGGEEEEETTEECCTTSBG
T ss_pred cccEEEEEEECCCCEEEeeecCccCHHHHHHHHHHhhcccccccCCCChhhEEEEECCeECcCCCcH
Confidence 4678888888877 3 46789999999999999 77889996 89999999999 54555
No 63
>2faz_A Ubiquitin-like containing PHD and ring finger DOM protein 1; cell cycle, DNA damage, DNA repair, DNA-binding, ligase, Met binding, nuclear protein; 2.00A {Homo sapiens} SCOP: d.15.1.1
Probab=99.23 E-value=2.4e-11 Score=70.32 Aligned_cols=53 Identities=17% Similarity=0.169 Sum_probs=44.2
Q ss_pred ceeeeeeeecc--e-eee-eeccchhHHHHHhhhhhcCCCCCceEEEECeEe--CCCcc
Q 040204 36 TLHSVRRFRGG--M-QIF-VESSDTIDNVKAKIQDKKGTPPDQQRQIFWFVF--GWGSL 88 (97)
Q Consensus 36 ti~l~i~~~~g--~-~i~-v~~~~TV~~lK~~I~~~~gip~~~q~Lif~G~~--~~~~~ 88 (97)
.+.+.++..+| + .+. |++++||++||++|++++|+|+++|+|+|+|++ |..+|
T Consensus 2 ~m~i~Vk~~~g~~~~~l~~v~~~~tv~~lK~~i~~~~gip~~~qrL~~~g~~L~d~~tL 60 (78)
T 2faz_A 2 SMWIQVRTMDGRQTHTVDSLSRLTKVEELRRKIQELFHVEPGLQRLFYRGKQMEDGHTL 60 (78)
T ss_dssp CEEEEEEETTSSCEEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTCBT
T ss_pred cEEEEEEECCCCEEEEEeccCCCCCHHHHHHHHHHHHCcChhhEEEEECCEECCCCCCH
Confidence 45677777655 2 577 899999999999999999999999999999998 44444
No 64
>2gow_A HCG-1 protein, ubiquitin-like protein 3; BC059385, structural genomics, protein structure initiative, PSI; NMR {Homo sapiens}
Probab=99.23 E-value=1e-11 Score=78.92 Aligned_cols=63 Identities=17% Similarity=0.274 Sum_probs=48.3
Q ss_pred CCccceecccceeeeeeeecc--eeeeeeccchhHHHHHhhhh------hcCCC--CCceEEEECeEe--CCCcc
Q 040204 26 TLVDYNIHGSTLHSVRRFRGG--MQIFVESSDTIDNVKAKIQD------KKGTP--PDQQRQIFWFVF--GWGSL 88 (97)
Q Consensus 26 tL~~y~I~~sti~l~i~~~~g--~~i~v~~~~TV~~lK~~I~~------~~gip--~~~q~Lif~G~~--~~~~~ 88 (97)
.|....+....+.+.++...| +.+.|++++||.+||++|++ ++|+| +++|||||+||+ |..+|
T Consensus 7 ~~~~~~~~~~~m~I~vktl~G~~~~lev~~s~TV~~lK~~I~~~~p~dwke~ip~~~~~qrLIy~GK~LeD~~TL 81 (125)
T 2gow_A 7 HLESSNVPADMINLRLILVSGKTKEFLFSPNDSASDIAKHVYDNWPMDWEEEQVSSPNILRLIYQGRFLHGNVTL 81 (125)
T ss_dssp ---CCSCCTTCEEEEEECTTSCEEEEEECTTSBHHHHHHHHHSSCCCSCCCCTTCCGGGEEEESSSSEEESSCBT
T ss_pred cccccCCCCCeEEEEEEeCCCCEEEEEeCCccHHHHHHHHHHHHCCcccccCCCCChHHEEEEECCcCCCCCCcH
Confidence 344444445567788877666 56888999999999999998 88984 999999999999 55554
No 65
>1wyw_B Ubiquitin-like protein SMT3C; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 1y8r_C* 2asq_A 2pe6_B 1a5r_A 2kqs_A 3kyc_D* 3rzw_C
Probab=99.22 E-value=1.8e-11 Score=74.17 Aligned_cols=50 Identities=14% Similarity=0.163 Sum_probs=45.1
Q ss_pred ccceeeeeeeecc--eeeeeeccchhHHHHHhhhhhcCCCCCceEEEECeEe
Q 040204 34 GSTLHSVRRFRGG--MQIFVESSDTIDNVKAKIQDKKGTPPDQQRQIFWFVF 83 (97)
Q Consensus 34 ~sti~l~i~~~~g--~~i~v~~~~TV~~lK~~I~~~~gip~~~q~Lif~G~~ 83 (97)
+..+.+.++...| +.+.|++++||.+||++|++++|+|+++|+|+|+|++
T Consensus 19 ~~~m~I~Vk~~~g~~~~l~v~~~~tv~~lK~~i~~~~gip~~~qrLif~Gk~ 70 (97)
T 1wyw_B 19 GEYIKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFEGQR 70 (97)
T ss_dssp CCEEEEEEECTTCCEEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEEETTEE
T ss_pred CCcEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCCChhhEEEEECCeE
Confidence 5578888887766 5678899999999999999999999999999999998
No 66
>4dwf_A HLA-B-associated transcript 3; ubiquitin-like domain, BAT3 protein, PF00240, structural GEN joint center for structural genomics, JCSG; 1.80A {Homo sapiens} PDB: 1wx9_A
Probab=99.22 E-value=3.7e-12 Score=75.80 Aligned_cols=46 Identities=33% Similarity=0.590 Sum_probs=41.3
Q ss_pred CccccCCCCcceEEEECCEEeCCCCCCccceecccceeeeeeeecc
Q 040204 1 IEDKEEILRDQQRFIFAGKRLEDGRTLVDYNIHGSTLHSVRRFRGG 46 (97)
Q Consensus 1 i~~~~gip~~~Q~L~~~g~~L~d~~tL~~y~I~~sti~l~i~~~~g 46 (97)
|++++|+|+++|+|+|+|+.|+|+.+|++|+|.+++||++.+..++
T Consensus 35 i~~~~gip~~~qrLi~~Gk~L~d~~tL~~~~i~g~~i~l~~~~~~~ 80 (90)
T 4dwf_A 35 IAASVSIPSEKQRLIYQGRVLQDDKKLQEYNVGGKVIHLVERAPPQ 80 (90)
T ss_dssp HHHHHTCCGGGEEEEETTEECCTTSBGGGGTCTTEEEEEEECCCC-
T ss_pred HHHHhCCCHHHEEEEECCeECCCCCCHHHcCCCCcEEEEEecCCCC
Confidence 3567899999999999999999999999999989999999987654
No 67
>3q3f_A Ribonuclease/ubiquitin chimeric protein; domain SWAP, oligomerization, ubiquitin insertion, hydrolase binding; 2.17A {Bacillus amyloliquefaciens}
Probab=99.22 E-value=1.8e-12 Score=87.48 Aligned_cols=51 Identities=71% Similarity=0.996 Sum_probs=47.4
Q ss_pred CccccCCCCcceEEEECCEEeCCCCCCccceec-ccceeeeeeeecceeeee
Q 040204 1 IEDKEEILRDQQRFIFAGKRLEDGRTLVDYNIH-GSTLHSVRRFRGGMQIFV 51 (97)
Q Consensus 1 i~~~~gip~~~Q~L~~~g~~L~d~~tL~~y~I~-~sti~l~i~~~~g~~i~v 51 (97)
|++++|+|+++|+|+|+|+.|+|+.+|++|+|+ +++|+|+++..+|..++|
T Consensus 135 I~~~~gIp~~~QrLi~~Gk~L~D~~tL~dygI~~gstI~LvlrlrGG~~~fv 186 (189)
T 3q3f_A 135 IQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGGQTFT 186 (189)
T ss_dssp HHHHHCCCGGGCCEEETTEECCTTCBGGGGTCCTTCEEEECCCCCCCCCCCC
T ss_pred HHhccCCCHHHEEEEECCEECCCCCCHHHCCCCCCCEEEEEEEcCCCCcceE
Confidence 356789999999999999999999999999999 999999999999987766
No 68
>4dbg_A Ranbp-type and C3HC4-type zinc finger-containing; ubiquitin fold, ubiquitination, ligase; 2.71A {Homo sapiens} PDB: 2lgy_A
Probab=99.22 E-value=2.3e-11 Score=75.18 Aligned_cols=55 Identities=16% Similarity=0.082 Sum_probs=45.1
Q ss_pred ccceeeeeeeec----ceeeeeeccchhHHHHHhhhhhcCCCCCceEEEECeEe--CCCcc
Q 040204 34 GSTLHSVRRFRG----GMQIFVESSDTIDNVKAKIQDKKGTPPDQQRQIFWFVF--GWGSL 88 (97)
Q Consensus 34 ~sti~l~i~~~~----g~~i~v~~~~TV~~lK~~I~~~~gip~~~q~Lif~G~~--~~~~~ 88 (97)
.-.+.+.++... .+.+.|+|++||++||++|++++|+||++|||+|+|++ |.++|
T Consensus 22 ~i~l~v~v~d~~s~~~~i~l~V~ps~TV~~LK~~I~~k~Gipp~~QRli~ggkll~D~~TL 82 (105)
T 4dbg_A 22 DIRLWVSVEDAQMHTVTIWLTVRPDMTVASLKDMVFLDYGFPPVLQQWVIGQRLARDQETL 82 (105)
T ss_dssp CEEEEEEEEESSSCCEEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEEECTTCBT
T ss_pred cEEEEEEEEccCCCCceEEEEECCcChHHHHHHHHHHHhCCCHHHEEEeccCeEccCcCcH
Confidence 345666666543 25678899999999999999999999999999999998 55655
No 69
>1wh3_A 59 kDa 2'-5'-oligoadenylate synthetase like protein; P59 OASL, ubiquitin family, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.22 E-value=3.2e-11 Score=71.12 Aligned_cols=55 Identities=24% Similarity=0.339 Sum_probs=46.5
Q ss_pred ccceeeeeeeecc--eeeeeeccchhHHHHHhhhhhcCCCCCceEEEECeEe--CCCcc
Q 040204 34 GSTLHSVRRFRGG--MQIFVESSDTIDNVKAKIQDKKGTPPDQQRQIFWFVF--GWGSL 88 (97)
Q Consensus 34 ~sti~l~i~~~~g--~~i~v~~~~TV~~lK~~I~~~~gip~~~q~Lif~G~~--~~~~~ 88 (97)
.+++.+.++...| +.+.|++++||.+||++|++.+|+|+++|+|+|+|+. |..+|
T Consensus 5 ~~~m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~qrL~~~Gk~L~d~~tL 63 (87)
T 1wh3_A 5 SSGIQVFVKNPDGGSYAYAINPNSFILGLKQQIEDQQGLPKKQQQLEFQGQVLQDWLGL 63 (87)
T ss_dssp SSSEEEEEEETTTEEEEEEECSSSBHHHHHHHHHHHTCCCTTTEEEEETTEECCSSSBH
T ss_pred CCCEEEEEEcCCCCEEEEEeCCCChHHHHHHHHHHHhCCChHHEEEEECCEEccCCCCH
Confidence 4577888887655 5678899999999999999999999999999999998 44444
No 70
>2dzi_A Ubiquitin-like protein 4A; GDX, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.22 E-value=4e-12 Score=73.88 Aligned_cols=43 Identities=40% Similarity=0.616 Sum_probs=39.6
Q ss_pred CccccCCCCcceEEEECCEEeCCCCCCccceec-ccceeeeeee
Q 040204 1 IEDKEEILRDQQRFIFAGKRLEDGRTLVDYNIH-GSTLHSVRRF 43 (97)
Q Consensus 1 i~~~~gip~~~Q~L~~~g~~L~d~~tL~~y~I~-~sti~l~i~~ 43 (97)
|++.+|+|++.|+|+|+|+.|+|+.+|++|+|. +++|++++++
T Consensus 37 i~~~~~i~~~~qrL~~~gk~L~d~~tL~~~~i~~g~~i~l~~~~ 80 (81)
T 2dzi_A 37 VSEKLNVPVRQQRLLFKGKALADGKRLSDYSIGPNSKLNLVVKP 80 (81)
T ss_dssp HHHHTCCCTTTCEEEETTEECCTTSBGGGGTCCSSBCCEEECCC
T ss_pred HHHHHCcCHHHEEEEECCeECCCCCcHHHcCCCCCCEEEEEEeC
Confidence 356789999999999999999999999999999 9999998875
No 71
>2dzi_A Ubiquitin-like protein 4A; GDX, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.22 E-value=3.6e-11 Score=69.75 Aligned_cols=55 Identities=20% Similarity=0.207 Sum_probs=46.4
Q ss_pred ccceeeeeeeecc--eeeeeeccchhHHHHHhhhhhcCCCCCceEEEECeEe--CCCcc
Q 040204 34 GSTLHSVRRFRGG--MQIFVESSDTIDNVKAKIQDKKGTPPDQQRQIFWFVF--GWGSL 88 (97)
Q Consensus 34 ~sti~l~i~~~~g--~~i~v~~~~TV~~lK~~I~~~~gip~~~q~Lif~G~~--~~~~~ 88 (97)
..++.+.++..+| +.+.+++++||++||++|++.+|+|+++|+|+|+|+. |..+|
T Consensus 5 ~~~m~i~vk~~~g~~~~~~v~~~~tV~~LK~~i~~~~~i~~~~qrL~~~gk~L~d~~tL 63 (81)
T 2dzi_A 5 SSGMQLTVKALQGRECSLQVPEDELVSTLKQLVSEKLNVPVRQQRLLFKGKALADGKRL 63 (81)
T ss_dssp SSSEEEEEEETTSCEEEEEECSSCBHHHHHHHHHHHTCCCTTTCEEEETTEECCTTSBG
T ss_pred CCcEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcCHHHEEEEECCeECCCCCcH
Confidence 4567888887665 5678899999999999999999999999999999998 44444
No 72
>1we6_A Splicing factor, putative; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=99.22 E-value=1.7e-12 Score=80.40 Aligned_cols=46 Identities=28% Similarity=0.366 Sum_probs=43.2
Q ss_pred CccccCCCCcceEEEECCEEeCCCCCCccceec-ccceeeeeeeecc
Q 040204 1 IEDKEEILRDQQRFIFAGKRLEDGRTLVDYNIH-GSTLHSVRRFRGG 46 (97)
Q Consensus 1 i~~~~gip~~~Q~L~~~g~~L~d~~tL~~y~I~-~sti~l~i~~~~g 46 (97)
|++.+|+|+++|+|+|+|+.|+|+.+|++|+|. +++|+++++..+|
T Consensus 61 I~~~~gip~~~QrL~~~Gk~L~D~~tL~~y~I~~g~~l~l~~r~~GG 107 (111)
T 1we6_A 61 IAGEIQIPANKQKLSGKAGFLKDNMSLAHYNVGAGEILTLSLRERSG 107 (111)
T ss_dssp HHHHTTCCTTTSEEECSSSBCCTTSBTTTTTCSSSCEEEEECSSCCS
T ss_pred HHHHHCCCHHHeEEEECCEECCCCCcHHHCCCCCCCEEEEEEEcCCC
Confidence 456789999999999999999999999999999 9999999999887
No 73
>2kdb_A Homocysteine-responsive endoplasmic reticulum- resident ubiquitin-like domain member...; UBL domain, membrane, polymorphism, transmembrane; NMR {Homo sapiens}
Probab=99.22 E-value=1.7e-11 Score=74.91 Aligned_cols=55 Identities=15% Similarity=0.152 Sum_probs=43.3
Q ss_pred ccceeeeeeeecce----eeeeeccchhHHHHHhhhhh-cCCC-CCceEEEECeEe--CCCcc
Q 040204 34 GSTLHSVRRFRGGM----QIFVESSDTIDNVKAKIQDK-KGTP-PDQQRQIFWFVF--GWGSL 88 (97)
Q Consensus 34 ~sti~l~i~~~~g~----~i~v~~~~TV~~lK~~I~~~-~gip-~~~q~Lif~G~~--~~~~~ 88 (97)
.+.+.+.++..++. .+.|++++||.+||++|+++ +|+| +++|||||+||+ |..+|
T Consensus 21 ~~~m~I~VK~~~g~~~~i~l~v~~~~TV~~LK~~I~~~~~g~pp~~~QrLIy~Gk~L~D~~tL 83 (99)
T 2kdb_A 21 GHPVTLIIKAPNQKYSDQTISCFLNWTVGKLKTHLSNVYPSKPLTKDQRLVYSGRLLPDHLQL 83 (99)
T ss_dssp --CEEEEEECTTSSSCCEEEEECTTSBHHHHHHHHHHHSTTCCCTTTCCEEETTEEECTTSBT
T ss_pred CCeEEEEEEcCCCCEEEEEEEcCCCCHHHHHHHHHHHHhcCCCChhhEEEEECCEECCCCCCH
Confidence 45688888876653 56779999999999999986 6766 599999999999 54554
No 74
>1wgd_A Homocysteine-responsive endoplasmic reticulum- resident ubiquitin-like domain member...; ENDPLASMIC reticulum stress, UBL domain; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.21 E-value=2.6e-11 Score=72.72 Aligned_cols=49 Identities=14% Similarity=0.139 Sum_probs=41.8
Q ss_pred cceeeeeeeecce--eee--eeccchhHHHHHhhhhhc--CCCCCceEEEECeEe
Q 040204 35 STLHSVRRFRGGM--QIF--VESSDTIDNVKAKIQDKK--GTPPDQQRQIFWFVF 83 (97)
Q Consensus 35 sti~l~i~~~~g~--~i~--v~~~~TV~~lK~~I~~~~--gip~~~q~Lif~G~~ 83 (97)
+.+.+.++..++. .+. +++++||.+||++|++.+ |+|+++|+|+|+|+.
T Consensus 6 ~~m~i~Vk~~~~~~~~~~v~v~~~~TV~~lK~~I~~~~~~~i~~~~QrLi~~Gk~ 60 (93)
T 1wgd_A 6 SGVTLLVKSPNQRHRDLELSGDRGWSVGHLKAHLSRVYPERPRPEDQRLIYSGKL 60 (93)
T ss_dssp CCCEEEEECSSSSCCCEEEECCTTSCHHHHHHHHHHHSTTCCCTTTCEEEETTEE
T ss_pred cEEEEEEEeCCCCeEEEEEecCCCCcHHHHHHHHHHHhcCCCChHHeEEEECCEE
Confidence 4677888876663 444 459999999999999998 999999999999998
No 75
>3m62_B UV excision repair protein RAD23; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=99.21 E-value=1.6e-11 Score=75.59 Aligned_cols=52 Identities=15% Similarity=0.077 Sum_probs=42.8
Q ss_pred eeeeeeeecc--eeeeeeccchhHHHHHhhhhhcCCCCCceEEEECeEe--CCCcc
Q 040204 37 LHSVRRFRGG--MQIFVESSDTIDNVKAKIQDKKGTPPDQQRQIFWFVF--GWGSL 88 (97)
Q Consensus 37 i~l~i~~~~g--~~i~v~~~~TV~~lK~~I~~~~gip~~~q~Lif~G~~--~~~~~ 88 (97)
+.+.++..+| +.+.|++++||.+||++|++++|+|+++|+|+|+|++ |..+|
T Consensus 2 m~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL 57 (106)
T 3m62_B 2 VSLTFKNFKKEKVPLDLEPSNTILETKTKLAQSISCEESQIKLIYSGKVLQDSKTV 57 (106)
T ss_dssp -CEEEECTTCCEEEECCCTTSBHHHHHHHHHHTTTSCGGGCEEEETTEECCTTSBT
T ss_pred EEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCCChhhEEEEECCEECCCcCCH
Confidence 4566776555 5577899999999999999999999999999999998 44444
No 76
>4eew_A Large proline-rich protein BAG6; ubiquitin-like fold, GP78-binding, chaperone; 1.30A {Homo sapiens}
Probab=99.21 E-value=5e-12 Score=74.93 Aligned_cols=42 Identities=36% Similarity=0.691 Sum_probs=38.3
Q ss_pred CccccCCCCcceEEEECCEEeCCCCCCccceecccceeeeee
Q 040204 1 IEDKEEILRDQQRFIFAGKRLEDGRTLVDYNIHGSTLHSVRR 42 (97)
Q Consensus 1 i~~~~gip~~~Q~L~~~g~~L~d~~tL~~y~I~~sti~l~i~ 42 (97)
|++++|+|+++|+|+|+|+.|+|+.+|++|+|.++++|++.|
T Consensus 47 i~~~~gip~~~qrLi~~Gk~L~D~~tL~~~~i~g~~i~lv~R 88 (88)
T 4eew_A 47 IAASVSIPSEKQRLIYQGRVLQDDKKLQEYNVGGKVIHLVER 88 (88)
T ss_dssp HHHHHTCCGGGEEEEETTEECCTTSBGGGGTCTTEEEEEEEC
T ss_pred HHHHhCCCHHHEEEEECCEECCCCCcHHHcCCCCcEEEEEEC
Confidence 356789999999999999999999999999998999999864
No 77
>2kd0_A LRR repeats and ubiquitin-like domain-containing protein AT2G30105; ubiquitin-like protein, NESG, leucine-rich repeat, structural genomics; NMR {Arabidopsis thaliana}
Probab=99.20 E-value=4e-11 Score=71.04 Aligned_cols=49 Identities=24% Similarity=0.337 Sum_probs=42.0
Q ss_pred cceeeeeeeecc-eeeeeeccchhHHHHHhhhhhcCCCCCceEEEECeEe
Q 040204 35 STLHSVRRFRGG-MQIFVESSDTIDNVKAKIQDKKGTPPDQQRQIFWFVF 83 (97)
Q Consensus 35 sti~l~i~~~~g-~~i~v~~~~TV~~lK~~I~~~~gip~~~q~Lif~G~~ 83 (97)
+++.++.+..+. +.+.+++++||.+||++|++.+|+|+++|+|+|+|+.
T Consensus 11 ~~~~~~~~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~Gk~ 60 (85)
T 2kd0_A 11 STIKLTVKFGGKSIPLSVSPDCTVKDLKSQLQPITNVLPRGQKLIFKGKV 60 (85)
T ss_dssp CCEEEEEEETTEEEEEEECTTSBHHHHHHHHHHHHCCCTTTCEEEETTEE
T ss_pred CcEEEEEEECCEEEEEEECCCCcHHHHHHHHHHHHCcChHHEEEEECCeE
Confidence 456566655544 5688899999999999999999999999999999998
No 78
>3u5e_m 60S ribosomal protein L40; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3u5i_m 4b6a_m 4a18_K 4a19_K 4a1b_K 4a1d_K 4adx_5 3izc_p 3izs_p 3iz5_p 3izr_p
Probab=99.20 E-value=1.6e-12 Score=82.49 Aligned_cols=47 Identities=72% Similarity=1.059 Sum_probs=0.5
Q ss_pred CccccCCCCcceEEEECCEEeCCCCCCccceec-ccceeeeeeeecce
Q 040204 1 IEDKEEILRDQQRFIFAGKRLEDGRTLVDYNIH-GSTLHSVRRFRGGM 47 (97)
Q Consensus 1 i~~~~gip~~~Q~L~~~g~~L~d~~tL~~y~I~-~sti~l~i~~~~g~ 47 (97)
|++.+|+|+++|+|+|+|+.|+|+.+|++|+|. +++|+++++..||.
T Consensus 30 I~~~~gip~~~QrLi~~Gk~L~D~~tL~~~~I~~gsti~l~~rl~GG~ 77 (128)
T 3u5e_m 30 IQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGI 77 (128)
T ss_dssp -----------------------------------------------C
T ss_pred HHHHhCcChHHEEEEECCEECCCCCchhhhccCCCCEEEEEEEcCCCC
Confidence 567899999999999999999999999999999 99999999999984
No 79
>3u30_A Ubiquitin, linear DI-ubiquitin; immune system; 2.43A {Homo sapiens}
Probab=99.19 E-value=3.3e-12 Score=84.24 Aligned_cols=46 Identities=74% Similarity=1.063 Sum_probs=38.9
Q ss_pred CccccCCCCcceEEEECCEEeCCCCCCccceec-ccceeeeeeeecc
Q 040204 1 IEDKEEILRDQQRFIFAGKRLEDGRTLVDYNIH-GSTLHSVRRFRGG 46 (97)
Q Consensus 1 i~~~~gip~~~Q~L~~~g~~L~d~~tL~~y~I~-~sti~l~i~~~~g 46 (97)
|++++|+|+++|+|+|+|+.|+|+++|++|+|+ +++++++++..||
T Consensus 126 I~~~~gip~~~q~L~~~g~~L~D~~tL~~y~i~~g~tl~l~~rlrgG 172 (172)
T 3u30_A 126 IQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 172 (172)
T ss_dssp HHHHHCCCGGGCCEEETTEECCTTSBSGGGTCCTTCEEEECC-----
T ss_pred HHHHhCCCceeEEEEECCccCCCCCcHHHhCCCCCCEEEEEEecCCC
Confidence 356789999999999999999999999999999 9999999998876
No 80
>2wyq_A HHR23A, UV excision repair protein RAD23 homolog A; DNA binding protein, DNA excision repair, proteasomal degrad polyubiquitin; 1.65A {Homo sapiens} PDB: 1p98_A 1p9d_U 1p1a_A
Probab=99.19 E-value=4.6e-11 Score=70.05 Aligned_cols=54 Identities=17% Similarity=0.161 Sum_probs=44.8
Q ss_pred ceeeeeeeecc--eeeeeeccchhHHHHHhhhhh---cCCCCCceEEEECeEe--CCCccc
Q 040204 36 TLHSVRRFRGG--MQIFVESSDTIDNVKAKIQDK---KGTPPDQQRQIFWFVF--GWGSLW 89 (97)
Q Consensus 36 ti~l~i~~~~g--~~i~v~~~~TV~~lK~~I~~~---~gip~~~q~Lif~G~~--~~~~~~ 89 (97)
.+.+.++..+| +.+.|++++||++||++|++. +|+|+++|+|+|+|+. |..+|-
T Consensus 5 ~m~i~vk~~~g~~~~~~v~~~~TV~~lK~~i~~~~~~~gip~~~qrLi~~Gk~L~D~~tL~ 65 (85)
T 2wyq_A 5 AVTITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIR 65 (85)
T ss_dssp CEEEEEEETTSCEEEEEECTTSBHHHHHHHHHHHHCTTTCCGGGEEEEETTEECCTTSBGG
T ss_pred eEEEEEEECCCCEEEEEECCCCCHHHHHHHHHhhccccCCCHHHeEEEECCEECcCCCCHH
Confidence 46677777655 567889999999999999997 8999999999999998 445543
No 81
>3m62_B UV excision repair protein RAD23; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=99.19 E-value=5.9e-12 Score=77.56 Aligned_cols=45 Identities=18% Similarity=0.350 Sum_probs=40.2
Q ss_pred CccccCCCCcceEEEECCEEeCCCCCCccceec-ccceeeeeeeec
Q 040204 1 IEDKEEILRDQQRFIFAGKRLEDGRTLVDYNIH-GSTLHSVRRFRG 45 (97)
Q Consensus 1 i~~~~gip~~~Q~L~~~g~~L~d~~tL~~y~I~-~sti~l~i~~~~ 45 (97)
|++.+|+|+++|+|+|+|+.|+|+.+|++|||+ +++|+++++...
T Consensus 31 I~~~~gip~~~QrLi~~Gk~L~D~~tL~~~~i~~g~~i~lv~~~~~ 76 (106)
T 3m62_B 31 LAQSISCEESQIKLIYSGKVLQDSKTVSECGLKDGDQVVFMVSQKK 76 (106)
T ss_dssp HHHTTTSCGGGCEEEETTEECCTTSBTTTTTCCTTCEEEEECCC--
T ss_pred HHHHHCCChhhEEEEECCEECCCcCCHHHcCCCCCCEEEEEEcCCC
Confidence 456789999999999999999999999999999 999999997554
No 82
>2ojr_A Ubiquitin; lanthide-binding TAG, terbium, TB, SAD phasing, protein binding; 2.60A {Homo sapiens}
Probab=99.19 E-value=7.6e-12 Score=77.53 Aligned_cols=46 Identities=74% Similarity=1.063 Sum_probs=42.1
Q ss_pred CccccCCCCcceEEEECCEEeCCCCCCccceec-ccceeeeeeeecc
Q 040204 1 IEDKEEILRDQQRFIFAGKRLEDGRTLVDYNIH-GSTLHSVRRFRGG 46 (97)
Q Consensus 1 i~~~~gip~~~Q~L~~~g~~L~d~~tL~~y~I~-~sti~l~i~~~~g 46 (97)
|++++|+|+++|+|+|+|+.|+|+.+|++|+|. +++|+++++..||
T Consensus 65 I~~~~gip~~~qrLi~~Gk~L~D~~tL~~~gI~~gs~I~l~~rl~GG 111 (111)
T 2ojr_A 65 IQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 111 (111)
T ss_dssp HHHHHCCCTTTEEEEETTEECCSSCBTTTTTCCTTCEEEEEECCCC-
T ss_pred HHHHHCcCcccEEEEECCEECCCCCcHHHcCCCCCCEEEEEEeCCCC
Confidence 356789999999999999999999999999999 9999999998876
No 83
>1yqb_A Ubiquilin 3; structural genomics consortium, ubiquitin, ubiquitin-like domain, structural genomics, signaling protein SGC; 2.00A {Homo sapiens} SCOP: d.15.1.1
Probab=99.19 E-value=4.1e-12 Score=77.56 Aligned_cols=46 Identities=33% Similarity=0.425 Sum_probs=42.2
Q ss_pred CccccCCCCcceEEEECCEEeCCCCCCccceec-ccceeeeeeeecc
Q 040204 1 IEDKEEILRDQQRFIFAGKRLEDGRTLVDYNIH-GSTLHSVRRFRGG 46 (97)
Q Consensus 1 i~~~~gip~~~Q~L~~~g~~L~d~~tL~~y~I~-~sti~l~i~~~~g 46 (97)
|++.+|+|+++|+|+|+|+.|+|+.+|++|+|. +++|+++.+..++
T Consensus 51 I~~~~gip~~~QrLi~~Gk~L~D~~tL~~ygI~~gstI~l~~r~~~~ 97 (100)
T 1yqb_A 51 ISQRFKAHPDQLVLIFAGKILKDPDSLAQCGVRDGLTVHLVIKRQHR 97 (100)
T ss_dssp HHHHHTCCGGGEEEEETTEECCTTSBHHHHTCCTTCEEEEEECCCCS
T ss_pred HHHHHCcChhhEEEEECCEECCCcCcHHHCCCCCCCEEEEEEcCCCC
Confidence 356789999999999999999999999999999 9999999987765
No 84
>2wyq_A HHR23A, UV excision repair protein RAD23 homolog A; DNA binding protein, DNA excision repair, proteasomal degrad polyubiquitin; 1.65A {Homo sapiens} PDB: 1p98_A 1p9d_U 1p1a_A
Probab=99.19 E-value=9.1e-12 Score=73.12 Aligned_cols=40 Identities=25% Similarity=0.350 Sum_probs=36.7
Q ss_pred cCCCCcceEEEECCEEeCCCCCCccceec-ccceeeeeeee
Q 040204 5 EEILRDQQRFIFAGKRLEDGRTLVDYNIH-GSTLHSVRRFR 44 (97)
Q Consensus 5 ~gip~~~Q~L~~~g~~L~d~~tL~~y~I~-~sti~l~i~~~ 44 (97)
+|+|+++|+|+|+|+.|+|+.+|++|+|. +++|+++.+..
T Consensus 42 ~gip~~~qrLi~~Gk~L~D~~tL~~~~i~~g~~i~l~~~~~ 82 (85)
T 2wyq_A 42 DAFPVAGQKLIYAGKILSDDVPIRDYRIDEKNFVVVMVTKT 82 (85)
T ss_dssp TTCCGGGEEEEETTEECCTTSBGGGGCCCTTSEEEEEEC--
T ss_pred cCCCHHHeEEEECCEECcCCCCHHHcCCCCCCEEEEEEcCC
Confidence 89999999999999999999999999999 99999988654
No 85
>2bwf_A Ubiquitin-like protein DSK2; signaling protein, UBA, signaling proteins; 1.15A {Saccharomyces cerevisiae} SCOP: d.15.1.1 PDB: 2bwe_S
Probab=99.19 E-value=8.3e-12 Score=71.87 Aligned_cols=42 Identities=36% Similarity=0.638 Sum_probs=38.5
Q ss_pred CccccCCCCcceEEEECCEEeCCCCCCccceec-ccceeeeee
Q 040204 1 IEDKEEILRDQQRFIFAGKRLEDGRTLVDYNIH-GSTLHSVRR 42 (97)
Q Consensus 1 i~~~~gip~~~Q~L~~~g~~L~d~~tL~~y~I~-~sti~l~i~ 42 (97)
|++.+|+|++.|+|+|+|+.|+|+.+|++|||. +++++++.+
T Consensus 33 i~~~~~i~~~~qrL~~~gk~L~d~~tL~~~~i~~g~~i~l~~~ 75 (77)
T 2bwf_A 33 INKANGIPVANQRLIYSGKILKDDQTVESYHIQDGHSVHLVKS 75 (77)
T ss_dssp HHHHHCCCGGGEEEEETTEECCTTSBTGGGTCCTTCEEEEEEC
T ss_pred HHHHhCCCHHHEEEEECCeEcCCCCCHHHcCCCCCCEEEEEEc
Confidence 356789999999999999999999999999999 999998765
No 86
>1yqb_A Ubiquilin 3; structural genomics consortium, ubiquitin, ubiquitin-like domain, structural genomics, signaling protein SGC; 2.00A {Homo sapiens} SCOP: d.15.1.1
Probab=99.18 E-value=4.6e-11 Score=72.87 Aligned_cols=55 Identities=22% Similarity=0.154 Sum_probs=47.0
Q ss_pred ccceeeeeeeecc-eeeeeeccchhHHHHHhhhhhcCCCCCceEEEECeEe--CCCcc
Q 040204 34 GSTLHSVRRFRGG-MQIFVESSDTIDNVKAKIQDKKGTPPDQQRQIFWFVF--GWGSL 88 (97)
Q Consensus 34 ~sti~l~i~~~~g-~~i~v~~~~TV~~lK~~I~~~~gip~~~q~Lif~G~~--~~~~~ 88 (97)
..++.+.++..+| +.+.|++++||.+||++|++.+|+|+++|+|+|+|+. |..+|
T Consensus 20 ~~~m~I~Vk~~~g~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL 77 (100)
T 1yqb_A 20 PHLIKVTVKTPKDKEDFSVTDTCTIQQLKEEISQRFKAHPDQLVLIFAGKILKDPDSL 77 (100)
T ss_dssp TTEEEEEEECSSCEEEEEEETTCBHHHHHHHHHHHHTCCGGGEEEEETTEECCTTSBH
T ss_pred CCeEEEEEEcCCCcEEEEECCCCcHHHHHHHHHHHHCcChhhEEEEECCEECCCcCcH
Confidence 5578888887665 6688899999999999999999999999999999998 44444
No 87
>1wx8_A Riken cDNA 4931431F19; ubiquitin-like domain, ubiquilin 1-like, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.18 E-value=2.4e-12 Score=77.57 Aligned_cols=46 Identities=37% Similarity=0.435 Sum_probs=42.5
Q ss_pred CccccCCCCcceEEEECCEEeCCCCCCccceec-ccceeeeeeeecc
Q 040204 1 IEDKEEILRDQQRFIFAGKRLEDGRTLVDYNIH-GSTLHSVRRFRGG 46 (97)
Q Consensus 1 i~~~~gip~~~Q~L~~~g~~L~d~~tL~~y~I~-~sti~l~i~~~~g 46 (97)
|++.+|+|+++|+|+|+|+.|+|+.+|++|+|. +++|+++.+..+|
T Consensus 46 I~~~~gip~~~qrL~~~Gk~L~D~~tL~~~gi~~g~~i~l~~~~~~g 92 (96)
T 1wx8_A 46 ISKYLHCNADRLVLIFTGKILRDQDILSQRGILDGSTVHVVVRSHSG 92 (96)
T ss_dssp HHHHTCSCTTTBCCEETTEECCTTSCHHHHTCCTTEEEECCBCCSSC
T ss_pred HHHHhCCCHHHEEEEECCEECCCcCCHHHCCCCCCCEEEEEEeCCCC
Confidence 356789999999999999999999999999999 9999999988776
No 88
>1uel_A HHR23B, UV excision repair protein RAD23 homolog B; UBL, UIM, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.18 E-value=1.1e-11 Score=74.77 Aligned_cols=42 Identities=24% Similarity=0.347 Sum_probs=38.8
Q ss_pred cCCCCcceEEEECCEEeCCCCCCccceec-ccceeeeeeeecc
Q 040204 5 EEILRDQQRFIFAGKRLEDGRTLVDYNIH-GSTLHSVRRFRGG 46 (97)
Q Consensus 5 ~gip~~~Q~L~~~g~~L~d~~tL~~y~I~-~sti~l~i~~~~g 46 (97)
+|+|+++|+|+|+|+.|+|+.+|++|+|. +++|+++.+...+
T Consensus 37 ~gip~~~qrLi~~Gk~L~D~~tL~~ygI~~g~~i~l~~~~~~~ 79 (95)
T 1uel_A 37 DAFPVAGQKLIYAGKILNDDTALKEYKIDEKNFVVVMVTKPKA 79 (95)
T ss_dssp TTCCTTTEEEEETTEECCTTSBGGGGTCCSSSEEEEEESSCCC
T ss_pred CCCChhhEEEEECCEECCCcCcHHHCCCCCCCEEEEEEeCCCC
Confidence 79999999999999999999999999999 9999999876543
No 89
>1wgg_A Ubiquitin carboxyl-terminal hydrolase 14; ubiquitin specific protease 14, USP14, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.17 E-value=3.7e-11 Score=72.82 Aligned_cols=50 Identities=12% Similarity=0.094 Sum_probs=43.4
Q ss_pred ccceeeeeeeecc-e-eeeeeccchhHHHHHhhhhhcCCCCCceEEEECeEe
Q 040204 34 GSTLHSVRRFRGG-M-QIFVESSDTIDNVKAKIQDKKGTPPDQQRQIFWFVF 83 (97)
Q Consensus 34 ~sti~l~i~~~~g-~-~i~v~~~~TV~~lK~~I~~~~gip~~~q~Lif~G~~ 83 (97)
..++.+.++..+. + .+.|++++||.+||++|++.+|+|+++|+|+|+|++
T Consensus 5 ~~~m~i~Vk~~g~~~~~l~v~~~~TV~~lK~~I~~~tgip~~~QkLi~~Gk~ 56 (96)
T 1wgg_A 5 SSGYSVTVKWGKEKFEGVELNTDEPPMVFKAQLFALTGVQPARQKVMVKGGT 56 (96)
T ss_dssp CCEEEEEEEETTEEEEEEEEESSSCHHHHHHHHHHHTCCCTTTSCCEETTEE
T ss_pred CcEEEEEEEECCEEEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEEECCcC
Confidence 4567778875444 5 488899999999999999999999999999999999
No 90
>1ndd_A NEDD8, protein (ubiquitin-like protein NEDD8); proteolysis, signaling protei; 1.60A {Homo sapiens} SCOP: d.15.1.1 PDB: 1r4m_I 1r4n_I* 1xt9_B 2ko3_A 3gzn_I* 2bkr_B 2nvu_I* 3dqv_A 1bt0_A
Probab=99.17 E-value=5.4e-11 Score=67.98 Aligned_cols=46 Identities=28% Similarity=0.489 Sum_probs=40.4
Q ss_pred eeeeeeecc--eeeeeeccchhHHHHHhhhhhcCCCCCceEEEECeEe
Q 040204 38 HSVRRFRGG--MQIFVESSDTIDNVKAKIQDKKGTPPDQQRQIFWFVF 83 (97)
Q Consensus 38 ~l~i~~~~g--~~i~v~~~~TV~~lK~~I~~~~gip~~~q~Lif~G~~ 83 (97)
.+.++..+| +.+.+++++||.+||++|++.+|+|+++|+|+|+|+.
T Consensus 2 ~i~vk~~~g~~~~~~v~~~~tv~~lK~~i~~~~~i~~~~q~L~~~g~~ 49 (76)
T 1ndd_A 2 LIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQ 49 (76)
T ss_dssp EEEEECTTSCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETTEE
T ss_pred EEEEECCCCCEEEEEECCCChHHHHHHHHHHHHCcChHHEEEEECCEE
Confidence 456666555 5677899999999999999999999999999999998
No 91
>1j8c_A Ubiquitin-like protein hplic-2; ubiquitin-like domain, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.17 E-value=1.2e-11 Score=78.45 Aligned_cols=47 Identities=38% Similarity=0.464 Sum_probs=39.6
Q ss_pred CccccCCCCcceEEEECCEEeCCCCCCccceec-ccceeeeeeeecce
Q 040204 1 IEDKEEILRDQQRFIFAGKRLEDGRTLVDYNIH-GSTLHSVRRFRGGM 47 (97)
Q Consensus 1 i~~~~gip~~~Q~L~~~g~~L~d~~tL~~y~I~-~sti~l~i~~~~g~ 47 (97)
|++++|+|+++|+|+|+|+.|+|+.+|++|+|. +++|+|+.+..+|.
T Consensus 61 I~~~~gip~~~QrLi~~Gk~L~D~~tL~dygI~~gstI~lv~~~~gg~ 108 (125)
T 1j8c_A 61 ISKRFKSQTDQLVLIFAGKILKDQDTLIQHGIHDGLTVHLVIKRDPNS 108 (125)
T ss_dssp HHHHHCSCSSSEEEEETTEEESTTSCGGGTTCSSSEEEEEEEC-----
T ss_pred HHHHHCcCcceEEEEECCEEcCCCCCHHHcCCCCCCEEEEEeccCCCC
Confidence 356789999999999999999999999999999 99999999988773
No 92
>2klc_A Ubiquilin-1; ubiquitin-like, structural genomics, PSI-2, protein structur initiative, northeast structural genomics consortium, NESG; NMR {Homo sapiens}
Probab=99.17 E-value=5.9e-11 Score=72.45 Aligned_cols=59 Identities=15% Similarity=0.122 Sum_probs=46.8
Q ss_pred ceec-ccceeeeeeeecc-eeeeeeccchhHHHHHhhhhhcCCCCCceEEEECeEe--CCCcc
Q 040204 30 YNIH-GSTLHSVRRFRGG-MQIFVESSDTIDNVKAKIQDKKGTPPDQQRQIFWFVF--GWGSL 88 (97)
Q Consensus 30 y~I~-~sti~l~i~~~~g-~~i~v~~~~TV~~lK~~I~~~~gip~~~q~Lif~G~~--~~~~~ 88 (97)
+.+. .+++.+.++..+. +.+.|++++||++||++|++.+|+|+++|+|+|+|+. |..+|
T Consensus 18 ~~~~~~~~m~I~Vk~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL 80 (101)
T 2klc_A 18 YFQGHPKIMKVTVKTPKEKEEFAVPENSSVQQFKEEISKRFKSHTDQLVLIFAGKILKDQDTL 80 (101)
T ss_dssp -----CCCEEEEEECSSCEEEEEECSCCCHHHHHHHHHHHHTCCGGGEEEEETTEEECTTCCT
T ss_pred ccCCCCCeEEEEEEeCCcEEEEEECCCCCHHHHHHHHHHHHCcChhhEEEEECCEECCCcCcH
Confidence 4445 6778888887643 5688899999999999999999999999999999998 44444
No 93
>2klc_A Ubiquilin-1; ubiquitin-like, structural genomics, PSI-2, protein structur initiative, northeast structural genomics consortium, NESG; NMR {Homo sapiens}
Probab=99.17 E-value=1.4e-11 Score=75.29 Aligned_cols=45 Identities=40% Similarity=0.495 Sum_probs=40.8
Q ss_pred CccccCCCCcceEEEECCEEeCCCCCCccceec-ccceeeeeeeec
Q 040204 1 IEDKEEILRDQQRFIFAGKRLEDGRTLVDYNIH-GSTLHSVRRFRG 45 (97)
Q Consensus 1 i~~~~gip~~~Q~L~~~g~~L~d~~tL~~y~I~-~sti~l~i~~~~ 45 (97)
|++.+|+|++.|+|+|+|+.|+|+.+|++|+|. +++|+++.+..+
T Consensus 54 I~~~~gip~~~qrLi~~Gk~L~D~~tL~~~gI~~g~~I~l~~~~~~ 99 (101)
T 2klc_A 54 ISKRFKSHTDQLVLIFAGKILKDQDTLSQHGIHDGLTVHLVIKTQN 99 (101)
T ss_dssp HHHHHTCCGGGEEEEETTEEECTTCCTGGGTCCTTCEEEEEECCSS
T ss_pred HHHHHCcChhhEEEEECCEECCCcCcHHHcCCCCCCEEEEEEcCCC
Confidence 356789999999999999999999999999999 999999987654
No 94
>3u5c_f 40S ribosomal protein S31; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3u5g_f
Probab=99.17 E-value=2.6e-12 Score=84.06 Aligned_cols=46 Identities=74% Similarity=1.063 Sum_probs=0.0
Q ss_pred CccccCCCCcceEEEECCEEeCCCCCCccceec-ccceeeeeeeecc
Q 040204 1 IEDKEEILRDQQRFIFAGKRLEDGRTLVDYNIH-GSTLHSVRRFRGG 46 (97)
Q Consensus 1 i~~~~gip~~~Q~L~~~g~~L~d~~tL~~y~I~-~sti~l~i~~~~g 46 (97)
|++.+|+|+++|+|+|+|+.|+|+.+|++|+|. +++|+++++..+|
T Consensus 30 I~~~~gip~~~QrLi~~Gk~L~D~~tL~dygI~~gstL~Lvlrl~GG 76 (152)
T 3u5c_f 30 IQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76 (152)
T ss_dssp -----------------------------------------------
T ss_pred HHHHhCCCHHHEEEEECCEEccccCcHHHcCCCCCCEEEEEeeccCC
Confidence 567899999999999999999999999999999 9999999999887
No 95
>4b6w_A Tubulin-specific chaperone; CAP-Gly, ubiquitin-like; HET: MSE; 2.35A {Trypanosoma brucei brucei strain 927}
Probab=99.16 E-value=5.2e-12 Score=75.38 Aligned_cols=44 Identities=11% Similarity=0.100 Sum_probs=39.0
Q ss_pred CccccCCCCcceEEEE-------CCEEeCCCCCCccceec-ccceeeeeeee
Q 040204 1 IEDKEEILRDQQRFIF-------AGKRLEDGRTLVDYNIH-GSTLHSVRRFR 44 (97)
Q Consensus 1 i~~~~gip~~~Q~L~~-------~g~~L~d~~tL~~y~I~-~sti~l~i~~~ 44 (97)
|+.++|||+++|||+| .|+.|+|+++|++|||+ |++|||+-+.+
T Consensus 34 i~~~~Gip~~~QrLi~~~~~~~~~g~~l~d~~tL~~Y~i~~g~~ihlvd~~P 85 (86)
T 4b6w_A 34 VFTHFATPPEYMQLQLIDDRGITIEKNMANDKQLGYYQCRDEFVIHVVDLQP 85 (86)
T ss_dssp HHTTSCCCGGGEEEEEECTTSCEEESSCCTTSBGGGGTCCTTCEEEEEECCC
T ss_pred HHHHHCCCHHHEEEEEecCCCCceeeEcCCCCCHHHCCCCCCCEEEEEeCCC
Confidence 4678999999999996 58889999999999999 99999986543
No 96
>2kjr_A CG11242; UBL, ubiquitin, ubiquitin-like, structural genomics, PSI-2, protein structure initiative; NMR {Drosophila melanogaster}
Probab=99.16 E-value=6.7e-11 Score=71.74 Aligned_cols=48 Identities=8% Similarity=0.064 Sum_probs=41.3
Q ss_pred ccceeeeeeeecc----eeeeeeccchhHHHHHhhhhhcCCCCCceEEEECe
Q 040204 34 GSTLHSVRRFRGG----MQIFVESSDTIDNVKAKIQDKKGTPPDQQRQIFWF 81 (97)
Q Consensus 34 ~sti~l~i~~~~g----~~i~v~~~~TV~~lK~~I~~~~gip~~~q~Lif~G 81 (97)
.+.|.+.++...+ .++.+++++||++||++|++++|+||++|||+|+|
T Consensus 13 ~~~v~l~It~s~~~~~~~~~~v~~~~TV~~LK~kI~~~~GiP~~~QrL~~~~ 64 (95)
T 2kjr_A 13 SDFIKVNVSNSHNDAVAFEVKLAKDLTVAQLKTKLEILTGGCAGTMKVQVFK 64 (95)
T ss_dssp CCEEEEEEEESSCSCEEEEEEEETTCBHHHHHHHHHHHHCSCTTTEEEEEEE
T ss_pred CCeEEEEEEECCCCceEEEEEeCccCHHHHHHHHHHHHHCcCHHHeEEEEec
Confidence 5677777776544 56788999999999999999999999999999984
No 97
>2bwf_A Ubiquitin-like protein DSK2; signaling protein, UBA, signaling proteins; 1.15A {Saccharomyces cerevisiae} SCOP: d.15.1.1 PDB: 2bwe_S
Probab=99.16 E-value=8.3e-11 Score=67.58 Aligned_cols=51 Identities=22% Similarity=0.234 Sum_probs=42.4
Q ss_pred eeeeeeeecc--eeeeeeccchhHHHHHhhhhhcCCCCCceEEEECeEe--CCCcc
Q 040204 37 LHSVRRFRGG--MQIFVESSDTIDNVKAKIQDKKGTPPDQQRQIFWFVF--GWGSL 88 (97)
Q Consensus 37 i~l~i~~~~g--~~i~v~~~~TV~~lK~~I~~~~gip~~~q~Lif~G~~--~~~~~ 88 (97)
+.+.++. +| +.+.+++++||.+||++|++.+|+|+++|+|+|+|+. |..+|
T Consensus 5 m~i~vk~-~g~~~~~~v~~~~tV~~LK~~i~~~~~i~~~~qrL~~~gk~L~d~~tL 59 (77)
T 2bwf_A 5 LNIHIKS-GQDKWEVNVAPESTVLQFKEAINKANGIPVANQRLIYSGKILKDDQTV 59 (77)
T ss_dssp EEEEEEE-TTEEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBT
T ss_pred EEEEEEE-CCEEEEEEECCCCcHHHHHHHHHHHhCCCHHHEEEEECCeEcCCCCCH
Confidence 4566666 44 5578899999999999999999999999999999998 44444
No 98
>1ttn_A DC-UBP, dendritic cell-derived ubiquitin-like protein; ubiquitin-like domain, solution structure, signaling protein; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.16 E-value=6.5e-11 Score=72.74 Aligned_cols=50 Identities=26% Similarity=0.371 Sum_probs=44.9
Q ss_pred ccceeeeeeeecc--eeeeeeccchhHHHHHhhhhhcCCCCCceEEEECeEe
Q 040204 34 GSTLHSVRRFRGG--MQIFVESSDTIDNVKAKIQDKKGTPPDQQRQIFWFVF 83 (97)
Q Consensus 34 ~sti~l~i~~~~g--~~i~v~~~~TV~~lK~~I~~~~gip~~~q~Lif~G~~ 83 (97)
+..+.+.++..+| +.+.|++++||.+||++|++++|+|+++|+|+|+|++
T Consensus 21 ~~~m~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~ 72 (106)
T 1ttn_A 21 GYECQLRLRLSTGKDLKLVVRSTDTVFHMKRRLHAAEGVEPGSQRWFFSGRP 72 (106)
T ss_dssp CCSEEEEEEETTTEEEEEEECTTSHHHHHHHHHHHTTCCCSTTCEEEETTEE
T ss_pred CCeEEEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHHHCcCcccEEEEECCEE
Confidence 5578888887666 5578899999999999999999999999999999998
No 99
>1uel_A HHR23B, UV excision repair protein RAD23 homolog B; UBL, UIM, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.16 E-value=7.7e-11 Score=71.01 Aligned_cols=51 Identities=18% Similarity=0.218 Sum_probs=42.3
Q ss_pred eeeeeeecc--eeeeeeccchhHHHHHhhhhh---cCCCCCceEEEECeEe--CCCcc
Q 040204 38 HSVRRFRGG--MQIFVESSDTIDNVKAKIQDK---KGTPPDQQRQIFWFVF--GWGSL 88 (97)
Q Consensus 38 ~l~i~~~~g--~~i~v~~~~TV~~lK~~I~~~---~gip~~~q~Lif~G~~--~~~~~ 88 (97)
.+.++..+| +.+.|++++||.+||++|++. +|+|+++|+|+|+|+. |..+|
T Consensus 2 ~I~Vk~~~g~~~~~~v~~~~TV~~LK~~I~~~~~~~gip~~~qrLi~~Gk~L~D~~tL 59 (95)
T 1uel_A 2 QVTLKTLQQQTFKIDIDPEETVKALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTAL 59 (95)
T ss_dssp EEEEEETTCCEEEEECCTTSBHHHHHHHHHHHHCTTTCCTTTEEEEETTEECCTTSBG
T ss_pred EEEEEeCCCCEEEEEECCCCHHHHHHHHHHhhcccCCCChhhEEEEECCEECCCcCcH
Confidence 456666545 567889999999999999999 8999999999999998 44444
No 100
>1wy8_A NP95-like ring finger protein, isoform A; ubiquitin-like domain, NP95/ICBP90-like ring finger (NIRF), ubiquitin ligase, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.16 E-value=1e-10 Score=69.25 Aligned_cols=55 Identities=20% Similarity=0.151 Sum_probs=45.9
Q ss_pred ccceeeeeeeecc---eee-eeeccchhHHHHHhhhhhcCCCCCceEEEECeEe--CCCcc
Q 040204 34 GSTLHSVRRFRGG---MQI-FVESSDTIDNVKAKIQDKKGTPPDQQRQIFWFVF--GWGSL 88 (97)
Q Consensus 34 ~sti~l~i~~~~g---~~i-~v~~~~TV~~lK~~I~~~~gip~~~q~Lif~G~~--~~~~~ 88 (97)
...+.+.++...| +.+ .|++++||.+||++|++.+|+|+++|+|+|+|+. |..+|
T Consensus 5 ~~~m~i~Vk~~~g~~~~~l~~v~~~~tV~~lK~~i~~~~gip~~~qrL~~~gk~L~d~~tL 65 (89)
T 1wy8_A 5 SSGMWIQVRTIDGSKTCTIEDVSRKATIEELRERVWALFDVRPECQRLFYRGKQLENGYTL 65 (89)
T ss_dssp SSCEEEEEEETTCSCEEEEEEECTTCBHHHHHHHHHHHSCCCTTTEEEEETTEECCSSSBH
T ss_pred CCcEEEEEEECCCCceEEEEecCCCCCHHHHHHHHHHHHCcChhhEEEEECCeECCCCCCH
Confidence 3567888887654 567 4899999999999999999999999999999998 43444
No 101
>3vdz_A Ubiquitin-40S ribosomal protein S27A; gadolinium, MRI contrast agent, peptide-based contrast agent lanthanide binding TAG; 2.40A {Synthetic construct} PDB: 2ojr_A
Probab=99.16 E-value=7.3e-11 Score=73.14 Aligned_cols=50 Identities=50% Similarity=0.582 Sum_probs=44.7
Q ss_pred ccceeeeeeeecc--eeeeeeccchhHHHHHhhhhhcCCCCCceEEEECeEe
Q 040204 34 GSTLHSVRRFRGG--MQIFVESSDTIDNVKAKIQDKKGTPPDQQRQIFWFVF 83 (97)
Q Consensus 34 ~sti~l~i~~~~g--~~i~v~~~~TV~~lK~~I~~~~gip~~~q~Lif~G~~ 83 (97)
...+.+.++..+| +.+.|++++||.+||++|++++|+|+++|+|+|+|+.
T Consensus 33 ~~~m~I~Vk~~~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~ 84 (111)
T 3vdz_A 33 LLAMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQ 84 (111)
T ss_dssp GGCEEEEEECSSSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEE
T ss_pred CccEEEEEEeCCCCEEEEEeCCCCCHHHHHHHHHHHhCCChHHEEEEECCEE
Confidence 4578888887766 5678899999999999999999999999999999998
No 102
>1sif_A Ubiquitin; hydrophobic mutants, folding, stability, structural protein; 2.18A {Homo sapiens} SCOP: d.15.1.1
Probab=99.16 E-value=6.2e-11 Score=70.50 Aligned_cols=52 Identities=48% Similarity=0.579 Sum_probs=43.1
Q ss_pred eeeeeeeecc--eeeeeeccchhHHHHHhhhhhcCCCCCceEEEECeEe--CCCcc
Q 040204 37 LHSVRRFRGG--MQIFVESSDTIDNVKAKIQDKKGTPPDQQRQIFWFVF--GWGSL 88 (97)
Q Consensus 37 i~l~i~~~~g--~~i~v~~~~TV~~lK~~I~~~~gip~~~q~Lif~G~~--~~~~~ 88 (97)
+.+.++..+| +.+.|++++||++||++|++.+|+|+++|+|+|+|+. |..+|
T Consensus 10 ~~i~v~~~~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~Gk~L~D~~tL 65 (88)
T 1sif_A 10 LQLFIKTLTGKTFTVEMEPSDTIENLKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL 65 (88)
T ss_dssp CEEEEEETTSCEEEEECCTTSBHHHHHHHHHHHHCCCGGGCEEEETTEECCTTSBS
T ss_pred eEEEEEeCCCCEEEEEECCCChHHHHHHHHHHHHCcChhhEEEEECCEECCCCCcH
Confidence 4556666665 5577899999999999999999999999999999998 44444
No 103
>2kj6_A Tubulin folding cofactor B; methods development, NESG, solution PSI-2, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana}
Probab=99.16 E-value=4.8e-11 Score=72.69 Aligned_cols=49 Identities=14% Similarity=0.093 Sum_probs=42.1
Q ss_pred ccceeeeeeeecc----eeeeeeccchhHHHHHhhhhhcCCCCCceEEEECeE
Q 040204 34 GSTLHSVRRFRGG----MQIFVESSDTIDNVKAKIQDKKGTPPDQQRQIFWFV 82 (97)
Q Consensus 34 ~sti~l~i~~~~g----~~i~v~~~~TV~~lK~~I~~~~gip~~~q~Lif~G~ 82 (97)
.+.|.+.++.... .++.+++++||++||++|++++|+||++|||+|.|+
T Consensus 12 ~~~v~l~It~s~~~~~~~e~~v~~~~TV~~LK~kIe~~~Gip~~~QrLi~~g~ 64 (97)
T 2kj6_A 12 DDSVHLHITHANLKSFSADARFSPQMSVEAVKEKLWKKCGTSVNSMALELYDD 64 (97)
T ss_dssp CCCEEEEEEETTSSCCCEEEEECTTCCHHHHHHHHHHHHCCCTTSEEEEEECS
T ss_pred CceEEEEEEECCCCceEEEEEeCCCChHHHHHHHHHHHHCcCHHHeEEEEecC
Confidence 5677777776433 567889999999999999999999999999999985
No 104
>3k9o_B Ubiquitin, UBB+1; E2-25K, complex structure, ATP-binding, isopeptide BO ligase, nucleotide-binding, UBL conjugation pathway; 1.80A {Homo sapiens} PDB: 2k25_A 2kx0_A
Probab=99.15 E-value=7.2e-11 Score=70.81 Aligned_cols=52 Identities=50% Similarity=0.601 Sum_probs=43.6
Q ss_pred eeeeeeeecc--eeeeeeccchhHHHHHhhhhhcCCCCCceEEEECeEe--CCCcc
Q 040204 37 LHSVRRFRGG--MQIFVESSDTIDNVKAKIQDKKGTPPDQQRQIFWFVF--GWGSL 88 (97)
Q Consensus 37 i~l~i~~~~g--~~i~v~~~~TV~~lK~~I~~~~gip~~~q~Lif~G~~--~~~~~ 88 (97)
+.+.++..+| +.+.|++++||.+||++|++.+|+|+++|+|+|+|+. |..+|
T Consensus 2 m~i~vk~~~g~~~~~~v~~~~TV~~LK~~i~~~~gip~~~qrL~~~G~~L~d~~tL 57 (96)
T 3k9o_B 2 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL 57 (96)
T ss_dssp CEEEEEETTCCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTSBT
T ss_pred cEEEEEeCCCCEEEEEECCCCCHHHHHHHHHhhhCCChhHEEEEECCEECCCCCcH
Confidence 4567776665 5577899999999999999999999999999999998 44444
No 105
>3m63_B Ubiquitin domain-containing protein DSK2; armadillo-like repeats, UBL conjugation pathway, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=99.15 E-value=7.4e-12 Score=76.59 Aligned_cols=43 Identities=35% Similarity=0.603 Sum_probs=39.3
Q ss_pred CccccCCCCcceEEEECCEEeCCCCCCccceec-ccceeeeeee
Q 040204 1 IEDKEEILRDQQRFIFAGKRLEDGRTLVDYNIH-GSTLHSVRRF 43 (97)
Q Consensus 1 i~~~~gip~~~Q~L~~~g~~L~d~~tL~~y~I~-~sti~l~i~~ 43 (97)
|++++|+|+++|+|+|+|+.|+|+.+|++|||+ +++|+++.+.
T Consensus 57 I~~~~gip~~~QrLi~~Gk~L~D~~tL~~~gI~~g~tI~lv~~~ 100 (101)
T 3m63_B 57 INKANGIPVANQRLIYSGKILKDDQTVESYHIQDGHSVHLVKSQ 100 (101)
T ss_dssp HHHHHSCCSTTCCEEETTEECCTTSBTTTTTCCTTEEEEECCCC
T ss_pred HHHHHCcChHHEEEEECCEECCCcCcHHHCCCCCCCEEEEEeCC
Confidence 356789999999999999999999999999999 9999998753
No 106
>4b6w_A Tubulin-specific chaperone; CAP-Gly, ubiquitin-like; HET: MSE; 2.35A {Trypanosoma brucei brucei strain 927}
Probab=99.15 E-value=6e-11 Score=70.71 Aligned_cols=53 Identities=13% Similarity=0.041 Sum_probs=40.6
Q ss_pred ceeeeeeee--cc--eeeeeeccchhHHHHHhhhhhcCCCCCceEEEE-------CeEe--CCCcc
Q 040204 36 TLHSVRRFR--GG--MQIFVESSDTIDNVKAKIQDKKGTPPDQQRQIF-------WFVF--GWGSL 88 (97)
Q Consensus 36 ti~l~i~~~--~g--~~i~v~~~~TV~~lK~~I~~~~gip~~~q~Lif-------~G~~--~~~~~ 88 (97)
+|.+.++-. +. .++.+++++||++||++|++++|+||++|+|+| .|++ |..+|
T Consensus 2 ~V~v~iths~~~~~~~E~r~~~s~TI~~lK~ki~~~~Gip~~~QrLi~~~~~~~~~g~~l~d~~tL 67 (86)
T 4b6w_A 2 VVKVSLTHSASRMRVPEKRYGLAQTIESIKENVFTHFATPPEYMQLQLIDDRGITIEKNMANDKQL 67 (86)
T ss_dssp EEEEEEEETTCSCCEEEEEEETTSBHHHHHHHHHTTSCCCGGGEEEEEECTTSCEEESSCCTTSBG
T ss_pred EEEEEEEEcCCCCeEEEEEcCccCcHHHHHHHHHHHHCCCHHHEEEEEecCCCCceeeEcCCCCCH
Confidence 445555432 22 467789999999999999999999999999997 5776 44554
No 107
>1wx7_A Ubiquilin 3; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.14 E-value=1e-11 Score=76.23 Aligned_cols=46 Identities=33% Similarity=0.425 Sum_probs=42.5
Q ss_pred CccccCCCCcceEEEECCEEeCCCCCCccceec-ccceeeeeeeecc
Q 040204 1 IEDKEEILRDQQRFIFAGKRLEDGRTLVDYNIH-GSTLHSVRRFRGG 46 (97)
Q Consensus 1 i~~~~gip~~~Q~L~~~g~~L~d~~tL~~y~I~-~sti~l~i~~~~g 46 (97)
|++.+|+|+++|+|+|+|+.|+|+++|++|+|. +++|+|+.+..++
T Consensus 46 I~~~~gip~~~qrLi~~Gk~L~D~~tL~~~gi~~g~~i~l~~~~~~~ 92 (106)
T 1wx7_A 46 ISQRFKAHPDQLVLIFAGKILKDPDSLAQCGVRDGLTVHLVIKRQHR 92 (106)
T ss_dssp HHHHHTCCTTTEEEEETTEECCTTSCHHHHTCCTTEEEEEEECCCCC
T ss_pred HHHHHCcChhhEEEEECCEECCCcCcHHHcCCCCCCEEEEEEcCCCC
Confidence 356789999999999999999999999999999 9999999988776
No 108
>4dbg_A Ranbp-type and C3HC4-type zinc finger-containing; ubiquitin fold, ubiquitination, ligase; 2.71A {Homo sapiens} PDB: 2lgy_A
Probab=99.14 E-value=1.9e-11 Score=75.57 Aligned_cols=42 Identities=12% Similarity=0.048 Sum_probs=38.6
Q ss_pred CccccCCCCcceEEEECCEEeCCCCCCcccee-c-ccceeeeee
Q 040204 1 IEDKEEILRDQQRFIFAGKRLEDGRTLVDYNI-H-GSTLHSVRR 42 (97)
Q Consensus 1 i~~~~gip~~~Q~L~~~g~~L~d~~tL~~y~I-~-~sti~l~i~ 42 (97)
|++++|||+++||++|+|+.++|++||++||| + |+++||++-
T Consensus 56 I~~k~Gipp~~QRli~ggkll~D~~TL~~ygI~~~G~t~hL~l~ 99 (105)
T 4dbg_A 56 VFLDYGFPPVLQQWVIGQRLARDQETLHSHGVRQNGDSAYLYLL 99 (105)
T ss_dssp HHHHHCCCGGGEEEEETTEEECTTCBTGGGTCCSTTCEEEEEEC
T ss_pred HHHHhCCCHHHEEEeccCeEccCcCcHHHcCCCCCCCEEEEEEE
Confidence 45789999999999999999999999999999 6 999999874
No 109
>1v5t_A 8430435I17RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 2kx3_A
Probab=99.14 E-value=7.6e-11 Score=70.48 Aligned_cols=50 Identities=18% Similarity=0.262 Sum_probs=42.8
Q ss_pred ccceeeeeeeecc-eee-eeeccchhHHHHHhhhhhcCCCCCceEEE---ECeEe
Q 040204 34 GSTLHSVRRFRGG-MQI-FVESSDTIDNVKAKIQDKKGTPPDQQRQI---FWFVF 83 (97)
Q Consensus 34 ~sti~l~i~~~~g-~~i-~v~~~~TV~~lK~~I~~~~gip~~~q~Li---f~G~~ 83 (97)
.+++.+.++..+. +.+ .|++++||.+||++|++++|+|+++|+|+ |+|++
T Consensus 5 ~~~m~i~Vk~~g~~~~i~~v~~~~TV~~lK~~I~~~~gip~~~QkLi~~k~~Gk~ 59 (90)
T 1v5t_A 5 SSGLPIIVKWGGQEYSVTTLSEDDTVLDLKQFLKTLTGVLPERQKLLGLKVKGKP 59 (90)
T ss_dssp CCSCCEEEEETTEEEEECSCCSSSBHHHHHHHHHHHTCCCTTTCEEESCEETTEE
T ss_pred CceEEEEEEECCEEEEEEEeCCCCCHHHHHHHHHHHHCcCHHHeEEEeeccCCcC
Confidence 3457777775433 557 88999999999999999999999999999 99998
No 110
>2l7r_A Ubiquitin-like protein FUBI; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; NMR {Homo sapiens}
Probab=99.14 E-value=6.6e-11 Score=71.15 Aligned_cols=55 Identities=16% Similarity=0.187 Sum_probs=43.8
Q ss_pred ccceeeeeeeecceeeeeeccchhHHHHHhhhhhcCCCCCceEEEECeEe--CCCcc
Q 040204 34 GSTLHSVRRFRGGMQIFVESSDTIDNVKAKIQDKKGTPPDQQRQIFWFVF--GWGSL 88 (97)
Q Consensus 34 ~sti~l~i~~~~g~~i~v~~~~TV~~lK~~I~~~~gip~~~q~Lif~G~~--~~~~~ 88 (97)
...+.+.++....+.+.|++++||.+||++|++++|+|+++|+|+|+|++ |..+|
T Consensus 17 ~~~m~I~Vk~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL 73 (93)
T 2l7r_A 17 RGSMQLFVRAQELHTFEVTGQETVAQIKAHVASLEGIAPEDQVVLLAGAPLEDEATL 73 (93)
T ss_dssp ---CEEEEESSSEEEEECCSSCBHHHHHHHHHHHHTCCGGGCEEEETTEECCTTSBH
T ss_pred CCcEEEEEECCCEEEEEeCCCCcHHHHHHHHHHHhCcChhHEEEEECCEECCCCCcH
Confidence 45677777772236688899999999999999999999999999999998 44444
No 111
>3b08_A Polyubiquitin-C, ubiquitin; protein complex, signaling protein-metal binding protein COM; HET: TRE; 1.70A {Homo sapiens} PDB: 2w9n_A* 3b0a_A* 3axc_A 2zvn_A 2zvo_A 2y5b_B
Probab=99.14 E-value=1.8e-11 Score=78.44 Aligned_cols=46 Identities=74% Similarity=1.063 Sum_probs=42.1
Q ss_pred CccccCCCCcceEEEECCEEeCCCCCCccceec-ccceeeeeeeecc
Q 040204 1 IEDKEEILRDQQRFIFAGKRLEDGRTLVDYNIH-GSTLHSVRRFRGG 46 (97)
Q Consensus 1 i~~~~gip~~~Q~L~~~g~~L~d~~tL~~y~I~-~sti~l~i~~~~g 46 (97)
|++++|+|++.|+|+|+|+.|+|+.+|++|+|. +++++++.+..||
T Consensus 106 i~~~~gi~~~~qrL~~~g~~L~d~~tL~~~~i~~~~~i~l~~r~~GG 152 (152)
T 3b08_A 106 IQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 152 (152)
T ss_dssp HHHHHCCCGGGEEEEETTEECCTTSBTGGGTCCTTCEEEEEECCCC-
T ss_pred HHHHhCcChhhEEEEECCEECCCCCCHHHcCCCCCCEEEEEEecCCC
Confidence 356789999999999999999999999999999 9999999998876
No 112
>2kd0_A LRR repeats and ubiquitin-like domain-containing protein AT2G30105; ubiquitin-like protein, NESG, leucine-rich repeat, structural genomics; NMR {Arabidopsis thaliana}
Probab=99.13 E-value=1.5e-11 Score=72.91 Aligned_cols=42 Identities=26% Similarity=0.426 Sum_probs=38.4
Q ss_pred CccccCCCCcceEEEECCEEeCCCCCCccceec-ccceeeeee
Q 040204 1 IEDKEEILRDQQRFIFAGKRLEDGRTLVDYNIH-GSTLHSVRR 42 (97)
Q Consensus 1 i~~~~gip~~~Q~L~~~g~~L~d~~tL~~y~I~-~sti~l~i~ 42 (97)
|++.+|+|+++|+|+|+|+.|+|+.+|++|+|. +++|+++.+
T Consensus 41 I~~~~gip~~~qrL~~~Gk~L~D~~tL~~~gi~~g~~l~l~~s 83 (85)
T 2kd0_A 41 LQPITNVLPRGQKLIFKGKVLVETSTLKQSDVGSGAKLMLMAS 83 (85)
T ss_dssp HHHHHCCCTTTCEEEETTEECCTTCBTTTTTCCTTEEEEEECC
T ss_pred HHHHHCcChHHEEEEECCeECCCcCCHHHCCCCCCCEEEEEEe
Confidence 356789999999999999999999999999999 999998764
No 113
>1ttn_A DC-UBP, dendritic cell-derived ubiquitin-like protein; ubiquitin-like domain, solution structure, signaling protein; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.12 E-value=1.2e-11 Score=76.12 Aligned_cols=46 Identities=17% Similarity=0.286 Sum_probs=41.6
Q ss_pred CccccCCCCcceEEEECCEEeCCCCCCccceec-ccceeeeeeeecc
Q 040204 1 IEDKEEILRDQQRFIFAGKRLEDGRTLVDYNIH-GSTLHSVRRFRGG 46 (97)
Q Consensus 1 i~~~~gip~~~Q~L~~~g~~L~d~~tL~~y~I~-~sti~l~i~~~~g 46 (97)
|++++|+|+++|+|+|+|+.|+|+++|++|+|. +++|+++.+....
T Consensus 53 I~~~~gip~~~qrLi~~Gk~L~D~~tL~~ygI~~g~ti~lv~~~~~~ 99 (106)
T 1ttn_A 53 LHAAEGVEPGSQRWFFSGRPLTDKMKFEELKIPKDYVVQVIVSQPVQ 99 (106)
T ss_dssp HHHTTCCCSTTCEEEETTEECCTTSHHHHCCCSSSCEEEEECCCSSC
T ss_pred HHHHHCcCcccEEEEECCEECCCCCcHHHcCCCCCCEEEEEEeCCCC
Confidence 356789999999999999999999999999999 9999999876543
No 114
>1wx7_A Ubiquilin 3; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.12 E-value=1.4e-10 Score=71.14 Aligned_cols=50 Identities=20% Similarity=0.159 Sum_probs=43.9
Q ss_pred ccceeeeeeeecc-eeeeeeccchhHHHHHhhhhhcCCCCCceEEEECeEe
Q 040204 34 GSTLHSVRRFRGG-MQIFVESSDTIDNVKAKIQDKKGTPPDQQRQIFWFVF 83 (97)
Q Consensus 34 ~sti~l~i~~~~g-~~i~v~~~~TV~~lK~~I~~~~gip~~~q~Lif~G~~ 83 (97)
...+.+.++..++ +.+.|++++||.+||++|++.+|+|+++|+|+|+|+.
T Consensus 15 ~~~m~I~Vk~~~g~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~ 65 (106)
T 1wx7_A 15 PHLIKVTVKTPKDKEDFSVTDTCTIQQLKEEISQRFKAHPDQLVLIFAGKI 65 (106)
T ss_dssp SSEEEEEEECSSCEEEEEEETTCCHHHHHHHHHHHHTCCTTTEEEEETTEE
T ss_pred CceEEEEEEeCCCcEEEEECCCCcHHHHHHHHHHHHCcChhhEEEEECCEE
Confidence 3467788876655 6688899999999999999999999999999999998
No 115
>1v5o_A 1700011N24RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.12 E-value=8.2e-12 Score=76.31 Aligned_cols=46 Identities=15% Similarity=0.307 Sum_probs=41.9
Q ss_pred CccccCCCCcceEEEECCEEeCCC-CCCccceec-ccceeeeeeeecc
Q 040204 1 IEDKEEILRDQQRFIFAGKRLEDG-RTLVDYNIH-GSTLHSVRRFRGG 46 (97)
Q Consensus 1 i~~~~gip~~~Q~L~~~g~~L~d~-~tL~~y~I~-~sti~l~i~~~~g 46 (97)
|++++|+|+++|+|+|+|+.|+|+ ++|++|+|+ +++|+|+.+..+|
T Consensus 41 I~~~~gip~~~qrL~~~gk~L~D~~~tL~~ygI~~g~~l~l~~~~~gg 88 (102)
T 1v5o_A 41 CELESGVPAEEAQIVYMEQLLTDDHCSLGSYGLKDGDMVVLLQKDNVG 88 (102)
T ss_dssp HHHHTCCCGGGBCEEETTEEECCSSSBHHHHTCCTTEEEEECBCCCCC
T ss_pred HHHHHCcChHHeEEEECCEECCCCcccHHHCCCCCCCEEEEEECCCCC
Confidence 456789999999999999999988 799999999 9999999988776
No 116
>3a9j_A Ubiquitin; protein complex, cytoplasm, isopeptide bond, metal-binding, zinc; 1.18A {Mus musculus} PDB: 3a1q_B 2znv_B 3a9k_A 3h7p_A 3jsv_A 3dvg_Y 3dvn_Y 3nob_A 2o6v_D* 3jw0_X 3jvz_X 3nhe_B* 1aar_A 1d3z_A 1f9j_A 1fxt_B 1g6j_A 1nbf_C 1cmx_B 1q5w_B ...
Probab=99.12 E-value=1.4e-10 Score=66.28 Aligned_cols=51 Identities=51% Similarity=0.595 Sum_probs=42.5
Q ss_pred eeeeeeecc--eeeeeeccchhHHHHHhhhhhcCCCCCceEEEECeEe--CCCcc
Q 040204 38 HSVRRFRGG--MQIFVESSDTIDNVKAKIQDKKGTPPDQQRQIFWFVF--GWGSL 88 (97)
Q Consensus 38 ~l~i~~~~g--~~i~v~~~~TV~~lK~~I~~~~gip~~~q~Lif~G~~--~~~~~ 88 (97)
.+.++..+| +.+.+++++||.+||++|++..|+|+++|+|+|+|+. |..+|
T Consensus 2 ~i~vk~~~g~~~~i~v~~~~tv~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~~tL 56 (76)
T 3a9j_A 2 QIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL 56 (76)
T ss_dssp EEEEEETTSCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTCBT
T ss_pred EEEEEcCCCCEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEEECCeECCCCCcH
Confidence 456666555 5677899999999999999999999999999999998 43444
No 117
>1wx8_A Riken cDNA 4931431F19; ubiquitin-like domain, ubiquilin 1-like, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.11 E-value=1e-10 Score=70.33 Aligned_cols=50 Identities=12% Similarity=0.123 Sum_probs=43.6
Q ss_pred ccceeeeeeeecc-eeeeeeccchhHHHHHhhhhhcCCCCCceEEEECeEe
Q 040204 34 GSTLHSVRRFRGG-MQIFVESSDTIDNVKAKIQDKKGTPPDQQRQIFWFVF 83 (97)
Q Consensus 34 ~sti~l~i~~~~g-~~i~v~~~~TV~~lK~~I~~~~gip~~~q~Lif~G~~ 83 (97)
..++.+.++..+. +.+.|++++||.+||++|++.+|+|+++|+|+|+|+.
T Consensus 15 ~~~m~i~Vk~~g~~~~~~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~Gk~ 65 (96)
T 1wx8_A 15 SRIIRVSVKTPQDCHEFFLAENSNVRRFKKQISKYLHCNADRLVLIFTGKI 65 (96)
T ss_dssp SCEEEEEEECSSSEEEEEEETTCCHHHHHHHHHHHTCSCTTTBCCEETTEE
T ss_pred CCcEEEEEEECCeEEEEEECCCCCHHHHHHHHHHHhCCCHHHEEEEECCEE
Confidence 3567777777633 5678899999999999999999999999999999998
No 118
>1wgh_A Ubiquitin-like 3, HCG-1 protein; ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.11 E-value=3.8e-11 Score=75.36 Aligned_cols=42 Identities=29% Similarity=0.366 Sum_probs=36.4
Q ss_pred ccCC--CCcceEEEECCEEeCCCCCCccceec-c--cceeeeeeeec
Q 040204 4 KEEI--LRDQQRFIFAGKRLEDGRTLVDYNIH-G--STLHSVRRFRG 45 (97)
Q Consensus 4 ~~gi--p~~~Q~L~~~g~~L~d~~tL~~y~I~-~--sti~l~i~~~~ 45 (97)
++|+ |+++|||+|+|+.|+|++||++|+|+ + +++||+++...
T Consensus 55 ke~~p~p~~qqrLIy~GK~LeD~~TL~~y~I~~~~~~tlhLvlr~~~ 101 (116)
T 1wgh_A 55 EEEQVSSPNILRLIYQGRFLHGNVTLGALKLPFGKTTVMHLVARETL 101 (116)
T ss_dssp SCCCCCCTTTEEEEETTEEECSSCBTTTTTCCSSCEEEEEEEECSSC
T ss_pred ccCCCCChHHEEEEECCcCCCCCCcHHHcCCCCCCceEEEEEccCCC
Confidence 5675 69999999999999999999999997 5 67888887653
No 119
>3l0w_B Monoubiquitinated proliferating cell nuclear antigen, proliferating cell nuclear antigen; replication, DNA damage, DNA repair; 2.80A {Saccharomyces cerevisiae} PDB: 3l10_B
Probab=99.10 E-value=1.7e-10 Score=76.40 Aligned_cols=51 Identities=53% Similarity=0.611 Sum_probs=43.3
Q ss_pred eeeeeeecc--eeeeeeccchhHHHHHhhhhhcCCCCCceEEEECeEe--CCCcc
Q 040204 38 HSVRRFRGG--MQIFVESSDTIDNVKAKIQDKKGTPPDQQRQIFWFVF--GWGSL 88 (97)
Q Consensus 38 ~l~i~~~~g--~~i~v~~~~TV~~lK~~I~~~~gip~~~q~Lif~G~~--~~~~~ 88 (97)
.+.++..+| +.+.|++++||.+||++|++++|+|+++|+|+|+|++ |..+|
T Consensus 2 qI~Vk~~~Gk~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL 56 (169)
T 3l0w_B 2 QIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTL 56 (169)
T ss_dssp EEEEEETTSCEEEEECCTTCBHHHHHHHHHHHHCCCTTTEEEEETTEECCTTSBG
T ss_pred EEEEEeCCCCEEEEEeCCCCCHHHHHHHHHHHHCcCHHHEEEEECCccccCcCcH
Confidence 466676665 5678899999999999999999999999999999999 44444
No 120
>2xzm_9 RPS31E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_9
Probab=99.10 E-value=8.8e-12 Score=84.08 Aligned_cols=51 Identities=12% Similarity=0.038 Sum_probs=0.0
Q ss_pred eeeeeeecc--eeeeeeccchhHHHHHhhhhhcCCCCCceEEEECeEe--CCCcc
Q 040204 38 HSVRRFRGG--MQIFVESSDTIDNVKAKIQDKKGTPPDQQRQIFWFVF--GWGSL 88 (97)
Q Consensus 38 ~l~i~~~~g--~~i~v~~~~TV~~lK~~I~~~~gip~~~q~Lif~G~~--~~~~~ 88 (97)
.+.++..+| +.+.|++++||.+||++|++.+|||+++|+|+|+|++ |..+|
T Consensus 2 qI~VKtL~GktitLeV~~sdTV~~LK~kI~~keGIP~~qQRLIf~GK~LeD~~TL 56 (189)
T 2xzm_9 2 QVQVKTLEGETKIYTLEQGTSVLDLKSQISQDMGFEIDMMTLVNNGFIAPNTELV 56 (189)
T ss_dssp -------------------------------------------------------
T ss_pred EEEEEcCCCCEEEEEECCcChHHHHHHHHHHHhCcChhHEEEEecCeECCCCCcc
Confidence 455665555 5678899999999999999999999999999999998 44443
No 121
>2daf_A FLJ35834 protein; hypothetical protein FLJ35834, ubiquitin-like domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.09 E-value=3.7e-11 Score=75.40 Aligned_cols=45 Identities=16% Similarity=0.136 Sum_probs=40.9
Q ss_pred ccccCCCCcceEEEECCEEeCCCCCCccceec-ccceeeeeeeecc
Q 040204 2 EDKEEILRDQQRFIFAGKRLEDGRTLVDYNIH-GSTLHSVRRFRGG 46 (97)
Q Consensus 2 ~~~~gip~~~Q~L~~~g~~L~d~~tL~~y~I~-~sti~l~i~~~~g 46 (97)
++..++|++.|+|+|+|+.|+|+.||++|||+ +.|+||+++....
T Consensus 47 s~~~~iP~e~qrLIy~GKiLKD~eTL~~~gIk~g~TIhLvi~s~~p 92 (118)
T 2daf_A 47 SHLLGIPHSVLQIRYSGKILKNNETLVQHGVKPQEIVQVEIFSTNP 92 (118)
T ss_dssp HHHHTCCTTTEEEEETTEEECSSCCHHHHSCCSSCEEEEEEEESCT
T ss_pred HhhhCCChHHEEEEECCeEcCCcchHHHcCCCCCCEEEEEEecCCC
Confidence 45679999999999999999999999999999 9999999986543
No 122
>1yx5_B Ubiquitin; proteasome, UIM, hydrolase; NMR {Homo sapiens} SCOP: d.15.1.1 PDB: 1yx6_B
Probab=99.09 E-value=2.2e-10 Score=69.15 Aligned_cols=46 Identities=54% Similarity=0.655 Sum_probs=40.5
Q ss_pred eeeeeeecc--eeeeeeccchhHHHHHhhhhhcCCCCCceEEEECeEe
Q 040204 38 HSVRRFRGG--MQIFVESSDTIDNVKAKIQDKKGTPPDQQRQIFWFVF 83 (97)
Q Consensus 38 ~l~i~~~~g--~~i~v~~~~TV~~lK~~I~~~~gip~~~q~Lif~G~~ 83 (97)
.+.++..+| +.+.|++++||.+||++|++.+|+|+++|+|+|+|+.
T Consensus 2 ~I~Vk~~~g~~~~~~v~~~~TV~~LK~~I~~~~gi~~~~qrL~~~Gk~ 49 (98)
T 1yx5_B 2 QIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQ 49 (98)
T ss_dssp EEEEEETTSCEEEEECCTTCBHHHHHHHHHHHTCCCGGGEEEEETTEE
T ss_pred EEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcChhhEEEEECCEE
Confidence 456666555 5678899999999999999999999999999999998
No 123
>1j8c_A Ubiquitin-like protein hplic-2; ubiquitin-like domain, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.07 E-value=3.2e-10 Score=71.74 Aligned_cols=55 Identities=15% Similarity=0.118 Sum_probs=45.9
Q ss_pred ccceeeeeeeecc-eeeeeeccchhHHHHHhhhhhcCCCCCceEEEECeEe--CCCcc
Q 040204 34 GSTLHSVRRFRGG-MQIFVESSDTIDNVKAKIQDKKGTPPDQQRQIFWFVF--GWGSL 88 (97)
Q Consensus 34 ~sti~l~i~~~~g-~~i~v~~~~TV~~lK~~I~~~~gip~~~q~Lif~G~~--~~~~~ 88 (97)
.+++.+.++..+. +.+.|++++||.+||++|++.+|+|+++|+|+|+|+. |..+|
T Consensus 30 ~~~m~I~Vk~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~tL 87 (125)
T 1j8c_A 30 PKIIKVTVKTPKEKEEFAVPENSSVQQFKEAISKRFKSQTDQLVLIFAGKILKDQDTL 87 (125)
T ss_dssp CCCEEEEEECSSCEEEEEECTTCCHHHHHHHHHHHHCSCSSSEEEEETTEEESTTSCG
T ss_pred CCcEEEEEEeCCeEEEEEECCCCcHHHHHHHHHHHHCcCcceEEEEECCEEcCCCCCH
Confidence 3567787777633 5678899999999999999999999999999999998 44444
No 124
>2gow_A HCG-1 protein, ubiquitin-like protein 3; BC059385, structural genomics, protein structure initiative, PSI; NMR {Homo sapiens}
Probab=99.07 E-value=3.9e-11 Score=76.18 Aligned_cols=43 Identities=28% Similarity=0.365 Sum_probs=37.8
Q ss_pred ccCCC--CcceEEEECCEEeCCCCCCccceec-cc--ceeeeeeeecc
Q 040204 4 KEEIL--RDQQRFIFAGKRLEDGRTLVDYNIH-GS--TLHSVRRFRGG 46 (97)
Q Consensus 4 ~~gip--~~~Q~L~~~g~~L~d~~tL~~y~I~-~s--ti~l~i~~~~g 46 (97)
++|+| +++|||+|+|+.|+|+.||++|+|+ ++ ++||+++..++
T Consensus 56 ke~ip~~~~~qrLIy~GK~LeD~~TL~~y~I~~~~~~tlhlv~r~~~~ 103 (125)
T 2gow_A 56 EEEQVSSPNILRLIYQGRFLHGNVTLGALKLPFGKTTVMHLVARETLP 103 (125)
T ss_dssp CCCTTCCGGGEEEESSSSEEESSCBTGGGCCCTTSEEEEEEEECSCCS
T ss_pred ccCCCCChHHEEEEECCcCCCCCCcHHHcCCCCCCceEEEEEecCCCC
Confidence 67884 8999999999999999999999998 65 78888887654
No 125
>1v86_A DNA segment, CHR 7, wayne state university 128, expressed; ubiquitin fold, structural genomics, D7WSU128E protein; HET: DNA; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.07 E-value=8.9e-11 Score=70.92 Aligned_cols=50 Identities=18% Similarity=0.197 Sum_probs=43.2
Q ss_pred ccceeeeeeeecc-eeeeeeccchhHHHHHhhhhhcCCCCCceEEEECeEe
Q 040204 34 GSTLHSVRRFRGG-MQIFVESSDTIDNVKAKIQDKKGTPPDQQRQIFWFVF 83 (97)
Q Consensus 34 ~sti~l~i~~~~g-~~i~v~~~~TV~~lK~~I~~~~gip~~~q~Lif~G~~ 83 (97)
..++.+.++..+. +.+.+++++||.+||++|++.+|+|+++|+|+|+|++
T Consensus 15 ~~~~~i~Vk~~g~~~~i~v~~~~TV~~LK~~I~~~tgip~~~QrL~~~Gk~ 65 (95)
T 1v86_A 15 KELVDLKIIWNKTKHDVKVPLDSTGSELKQKIHSITGLPPAMQKVMYKGLV 65 (95)
T ss_dssp CCCEEEEEEETTEEEEEEECTTSBHHHHHHHHHHHHCSCSTTCCCBSSSBC
T ss_pred CceEEEEEEECCEEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEEECCee
Confidence 4567777775443 5688899999999999999999999999999999998
No 126
>2dzm_A FAS-associated factor 1; ubiquitin-like domain, HFAF1, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.06 E-value=1.7e-10 Score=70.65 Aligned_cols=47 Identities=13% Similarity=0.114 Sum_probs=38.7
Q ss_pred eeeeeeeecc-eeeeeeccchhHHHHHhhhhhcCCCCCceEEEE--CeEe
Q 040204 37 LHSVRRFRGG-MQIFVESSDTIDNVKAKIQDKKGTPPDQQRQIF--WFVF 83 (97)
Q Consensus 37 i~l~i~~~~g-~~i~v~~~~TV~~lK~~I~~~~gip~~~q~Lif--~G~~ 83 (97)
+.+.++..++ +.|.|++++||++||++|++++||||++|+|+| +|+.
T Consensus 10 ~~~~vk~~Gk~~~v~v~~~~TV~~LK~~I~~~tgIpp~~QkLi~~~~gkL 59 (100)
T 2dzm_A 10 LDFRVEYRDRNVDVVLEDTCTVGEIKQILENELQIPVSKMLLKGWKTGDV 59 (100)
T ss_dssp EEEEEECSSCEEEEEEETTSBHHHHHHHHHHHHCCCTTTCCEECCSSSCC
T ss_pred EEEEEEeCCeEEEEEECCCCcHHHHHHHHHHHHCCChhHeEEEccCCCCC
Confidence 3445555444 668889999999999999999999999999997 6664
No 127
>2ojr_A Ubiquitin; lanthide-binding TAG, terbium, TB, SAD phasing, protein binding; 2.60A {Homo sapiens}
Probab=99.06 E-value=4.1e-10 Score=69.61 Aligned_cols=49 Identities=51% Similarity=0.624 Sum_probs=44.3
Q ss_pred cceeeeeeeecc--eeeeeeccchhHHHHHhhhhhcCCCCCceEEEECeEe
Q 040204 35 STLHSVRRFRGG--MQIFVESSDTIDNVKAKIQDKKGTPPDQQRQIFWFVF 83 (97)
Q Consensus 35 sti~l~i~~~~g--~~i~v~~~~TV~~lK~~I~~~~gip~~~q~Lif~G~~ 83 (97)
+++.+.++..+| +.+.|++++||.+||++|++.+|+|+++|+|+|+|+.
T Consensus 34 ~~m~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~ 84 (111)
T 2ojr_A 34 LAMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQ 84 (111)
T ss_dssp SCEEEEEECSSSCEEEEEECTTCBHHHHHHHHHHHHCCCTTTEEEEETTEE
T ss_pred CeEEEEEEcCCCCEEEEEeCCCCCHHHHHHHHHHHHCcCcccEEEEECCEE
Confidence 578888887665 5678899999999999999999999999999999998
No 128
>2kdi_A Ubiquitin, vacuolar protein sorting-associated protein 27 fusion protein; ubiquitin interacting motif, UIM, protein domain interface; NMR {Saccharomyces cerevisiae}
Probab=99.06 E-value=2.8e-10 Score=70.89 Aligned_cols=53 Identities=49% Similarity=0.587 Sum_probs=43.9
Q ss_pred ceeeeeeeecc--eeeeeeccchhHHHHHhhhhhcCCCCCceEEEECeEe--CCCcc
Q 040204 36 TLHSVRRFRGG--MQIFVESSDTIDNVKAKIQDKKGTPPDQQRQIFWFVF--GWGSL 88 (97)
Q Consensus 36 ti~l~i~~~~g--~~i~v~~~~TV~~lK~~I~~~~gip~~~q~Lif~G~~--~~~~~ 88 (97)
.+.+.++..+| +.+.|++++||++||++|++.+|+|+++|+|+|+|+. |..+|
T Consensus 9 ~~~i~vk~l~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~~tL 65 (114)
T 2kdi_A 9 EFQIFAKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIWAGKQLEDGRTL 65 (114)
T ss_dssp CCEEEEEETTCCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTTCBT
T ss_pred cEEEEEEeCCCcEEEEEECCCCcHHHHHHHHHHHHCcChHHEEEEECCEECCCCCcH
Confidence 35566666666 5577899999999999999999999999999999998 44444
No 129
>1we6_A Splicing factor, putative; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=99.05 E-value=2.1e-10 Score=70.94 Aligned_cols=55 Identities=25% Similarity=0.206 Sum_probs=46.2
Q ss_pred ccceeeeeeee---cc--eeeeeec-cchhHHHHHhhhhhcCCCCCceEEEECeEe--CCCcc
Q 040204 34 GSTLHSVRRFR---GG--MQIFVES-SDTIDNVKAKIQDKKGTPPDQQRQIFWFVF--GWGSL 88 (97)
Q Consensus 34 ~sti~l~i~~~---~g--~~i~v~~-~~TV~~lK~~I~~~~gip~~~q~Lif~G~~--~~~~~ 88 (97)
...+.+.++.. +| +.+.|++ ++||.+||++|++.+|+|+++|+|+|+|++ |..+|
T Consensus 25 ~~~i~i~Vk~~~~~~g~~~~l~v~~l~~TV~~LK~~I~~~~gip~~~QrL~~~Gk~L~D~~tL 87 (111)
T 1we6_A 25 PGPATIRVSKPNENDGQFMEITVQSLSENVGSLKEKIAGEIQIPANKQKLSGKAGFLKDNMSL 87 (111)
T ss_dssp CSCEEEEECCTTCSSSCCEEEEESCSSSBHHHHHHHHHHHTTCCTTTSEEECSSSBCCTTSBT
T ss_pred CCcEEEEEEecccCCCcEEEEEecCCCCcHHHHHHHHHHHHCCCHHHeEEEECCEECCCCCcH
Confidence 45688888876 44 5678897 999999999999999999999999999998 44444
No 130
>1we7_A SF3A1 protein; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 1zkh_A
Probab=99.05 E-value=4.6e-10 Score=69.81 Aligned_cols=50 Identities=18% Similarity=0.337 Sum_probs=42.5
Q ss_pred ccceeeeeeeec----------c--eeeeeeccchhHHHHHhhhhhcCCCCCceEEEECeEe
Q 040204 34 GSTLHSVRRFRG----------G--MQIFVESSDTIDNVKAKIQDKKGTPPDQQRQIFWFVF 83 (97)
Q Consensus 34 ~sti~l~i~~~~----------g--~~i~v~~~~TV~~lK~~I~~~~gip~~~q~Lif~G~~ 83 (97)
...|.+.++.++ | +.+.|++++||.+||++|++.+|+|+++|+|+|+|+.
T Consensus 23 ~~~i~l~V~~p~~~~~~~~~L~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrL~~~Gk~ 84 (115)
T 1we7_A 23 KGPVSIKVQVPNMQDKTEWKLNGQGLVFTLPLTDQVSVIKVKIHEATGMPAGKQKLQYEGIF 84 (115)
T ss_dssp CSCEEEEEEECCCSSSCSSCCSSEEEEEEECSCSBTHHHHHHHHHHSSCCTTTEEEEETTEE
T ss_pred CCCEEEEEEcCCCccccccccCCeEEEEEECCCCCHHHHHHHHHHHHCCChHHEEEEECCEE
Confidence 346667666653 2 5678899999999999999999999999999999998
No 131
>1x1m_A Ubiquitin-like protein SB132; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.05 E-value=4.9e-11 Score=73.46 Aligned_cols=43 Identities=33% Similarity=0.547 Sum_probs=39.1
Q ss_pred cccc--CCCCcc-eEEEECCEEeCCCCCCccceec-ccceeeeeeee
Q 040204 2 EDKE--EILRDQ-QRFIFAGKRLEDGRTLVDYNIH-GSTLHSVRRFR 44 (97)
Q Consensus 2 ~~~~--gip~~~-Q~L~~~g~~L~d~~tL~~y~I~-~sti~l~i~~~ 44 (97)
++++ |+|+++ |+|+|+|+.|+|+++|++|+|+ +++|+++.+..
T Consensus 55 ~~~~~~gip~~~~qrLi~~Gk~L~D~~tL~~y~i~~g~~i~lv~~~~ 101 (107)
T 1x1m_A 55 AGKLQESVPDPELIDLIYCGRKLKDDQTLDFYGIQPGSTVHVLRKSW 101 (107)
T ss_dssp HHHCTTTCCCSSSEEEEETTEECCTTCBHHHHTCCTTCEEEEEESSC
T ss_pred HHHhccCCChhhcEEEEECCeECCCCCcHHHcCCCCCCEEEEEeCCC
Confidence 4556 999999 9999999999999999999999 99999988754
No 132
>1wxv_A BAG-family molecular chaperone regulator-1; structural genomics, apoptosis, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.05 E-value=5.2e-10 Score=66.76 Aligned_cols=50 Identities=18% Similarity=0.212 Sum_probs=42.6
Q ss_pred ccceeeeeeeecc-eeeeeecc-----chhHHHHHhhhhhcCCCCCceEEEECeEe
Q 040204 34 GSTLHSVRRFRGG-MQIFVESS-----DTIDNVKAKIQDKKGTPPDQQRQIFWFVF 83 (97)
Q Consensus 34 ~sti~l~i~~~~g-~~i~v~~~-----~TV~~lK~~I~~~~gip~~~q~Lif~G~~ 83 (97)
.+++.+.++..+. +.+.++++ +||.+||++|++.+|+|+++|+|+|+|+.
T Consensus 5 ~~~~~v~Vk~~~~~~~i~v~~~~~~~~~TV~~LK~~i~~~~gip~~~qrL~~~Gk~ 60 (92)
T 1wxv_A 5 SSGLTVTVTHSNEKHDLHVTSQQGSSEPVVQDLAQVVEEVIGVPQSFQKLIFKGKS 60 (92)
T ss_dssp CSSEEEEEECSSSEEEEEECCCSSSSSCBHHHHHHHHHHHTCCCTTTCEEEETTEE
T ss_pred CCeEEEEEEECCEEEEEEECCCcCcccCcHHHHHHHHHHHHCcCHHHEEEEECCee
Confidence 4567777776543 56778885 99999999999999999999999999998
No 133
>1wgg_A Ubiquitin carboxyl-terminal hydrolase 14; ubiquitin specific protease 14, USP14, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.04 E-value=3.9e-11 Score=72.74 Aligned_cols=43 Identities=14% Similarity=0.202 Sum_probs=39.1
Q ss_pred CccccCCCCcceEEEECCEEeCCCCCCccceec-ccceeeeeeee
Q 040204 1 IEDKEEILRDQQRFIFAGKRLEDGRTLVDYNIH-GSTLHSVRRFR 44 (97)
Q Consensus 1 i~~~~gip~~~Q~L~~~g~~L~d~~tL~~y~I~-~sti~l~i~~~ 44 (97)
|++++|||+++|+|+|+|+.|+|+ +|++|+|. +++|+|+.+..
T Consensus 37 I~~~tgip~~~QkLi~~Gk~L~D~-tL~~~~I~~g~~i~l~~~~~ 80 (96)
T 1wgg_A 37 LFALTGVQPARQKVMVKGGTLKDD-DWGNIKMKNGMTVLMMGSAD 80 (96)
T ss_dssp HHHHTCCCTTTSCCEETTEECCSS-CCCSCCCCSSCEEECCCCCC
T ss_pred HHHHHCcCHHHeEEEECCcCCCCC-CHHHCCCCCCCEEEEEecch
Confidence 467899999999999999999999 99999999 99999987654
No 134
>1v2y_A 3300001G02RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.03 E-value=1e-10 Score=72.21 Aligned_cols=50 Identities=16% Similarity=-0.029 Sum_probs=43.0
Q ss_pred ccceeeeeeeecc--eeeeeeccchhHHHHHhhhhhcCCCC---------------CceEEEECeEe
Q 040204 34 GSTLHSVRRFRGG--MQIFVESSDTIDNVKAKIQDKKGTPP---------------DQQRQIFWFVF 83 (97)
Q Consensus 34 ~sti~l~i~~~~g--~~i~v~~~~TV~~lK~~I~~~~gip~---------------~~q~Lif~G~~ 83 (97)
+..+.+.++..+| +.|.|++++||++||++|++++++|+ ++|+|+|+|++
T Consensus 5 ~~~M~I~Vk~l~g~~~~v~V~~~~TV~dLK~~I~~~~~i~~~~q~g~~~isw~~~w~q~~Li~~Gk~ 71 (105)
T 1v2y_A 5 SSGMTVRVCKMDGEVMPVVVVQNATVLDLKKAIQRYVQLKQEREGGVQHISWSYVWRTYHLTSAGEK 71 (105)
T ss_dssp CCSEEEEEECSSSCEEEEEECTTCBHHHHHHHHHHHHHHHHHHTTCCCCCCHHHHHTTEEEESSSCE
T ss_pred CCcEEEEEEecCCCEEEEEECCCChHHHHHHHHHHHhCCCcccccCcceeeeeecceeEEEEeCCcC
Confidence 4567788877766 66888999999999999999999987 46799999998
No 135
>1v5o_A 1700011N24RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.03 E-value=4.4e-10 Score=68.54 Aligned_cols=49 Identities=10% Similarity=0.152 Sum_probs=41.6
Q ss_pred cceeeeeeeec------ceeeeeeccchhHHHHHhhhhhcCCCCCceEEEECeEe
Q 040204 35 STLHSVRRFRG------GMQIFVESSDTIDNVKAKIQDKKGTPPDQQRQIFWFVF 83 (97)
Q Consensus 35 sti~l~i~~~~------g~~i~v~~~~TV~~lK~~I~~~~gip~~~q~Lif~G~~ 83 (97)
+.+.+.++... .+.+.|++++||++||++|++.+|+|+++|+|+|+|++
T Consensus 6 ~~m~I~Vk~~~~~~~~~~~~i~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~gk~ 60 (102)
T 1v5o_A 6 SGMLITVYCVRRDLTEVTFSLQVNPDFELSNFRVLCELESGVPAEEAQIVYMEQL 60 (102)
T ss_dssp CCEEEEEEECCCCCCCCEEEEEECTTCBHHHHHHHHHHHTCCCGGGBCEEETTEE
T ss_pred CeEEEEEEECCCCcCceEEEEEcCCCCCHHHHHHHHHHHHCcChHHeEEEECCEE
Confidence 34667676642 24578899999999999999999999999999999998
No 136
>3q3f_A Ribonuclease/ubiquitin chimeric protein; domain SWAP, oligomerization, ubiquitin insertion, hydrolase binding; 2.17A {Bacillus amyloliquefaciens}
Probab=99.02 E-value=3e-10 Score=76.59 Aligned_cols=53 Identities=49% Similarity=0.538 Sum_probs=45.2
Q ss_pred ceeeeeeeecc--eeeeeeccchhHHHHHhhhhhcCCCCCceEEEECeEe--CCCcc
Q 040204 36 TLHSVRRFRGG--MQIFVESSDTIDNVKAKIQDKKGTPPDQQRQIFWFVF--GWGSL 88 (97)
Q Consensus 36 ti~l~i~~~~g--~~i~v~~~~TV~~lK~~I~~~~gip~~~q~Lif~G~~--~~~~~ 88 (97)
.+.+.++..+| +.+.|++++||.+||++|++.+|+|+++|+|+|+|++ |..+|
T Consensus 105 eMqI~VKtl~Gkt~~l~V~~s~TV~~LK~kI~~~~gIp~~~QrLi~~Gk~L~D~~tL 161 (189)
T 3q3f_A 105 GGQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL 161 (189)
T ss_dssp CEEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCCEEETTEECCTTCBG
T ss_pred ceeeeeecCCCCEEEEEeCCCCcHHHHHHHHHhccCCCHHHEEEEECCEECCCCCCH
Confidence 46777777666 5678899999999999999999999999999999998 44444
No 137
>1v6e_A Cytoskeleton-associated protein 1; tubulin-specific chaperone B, tubulin folding cofactor B, microtubule, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.02 E-value=3e-10 Score=68.45 Aligned_cols=46 Identities=15% Similarity=0.019 Sum_probs=39.1
Q ss_pred ceeeeeeeecc---eeeeeeccchhHHHHHhhhhhcCCCCCceEEEECe
Q 040204 36 TLHSVRRFRGG---MQIFVESSDTIDNVKAKIQDKKGTPPDQQRQIFWF 81 (97)
Q Consensus 36 ti~l~i~~~~g---~~i~v~~~~TV~~lK~~I~~~~gip~~~q~Lif~G 81 (97)
.|.+.++..+. .++.+++++||++||++|++++|+|+++|+|+|+|
T Consensus 7 ~v~l~I~~~~~~~~~~~~v~~~~TV~~lK~ki~~~~gip~~~qrL~~~~ 55 (95)
T 1v6e_A 7 GVMVFISSSLNSFRSEKRYSRSLTIAEFKCKLELVVGSPASCMELELYG 55 (95)
T ss_dssp CEEEEEEETTSSSCEEEEECTTSBHHHHHHHHHHHTCSCTTTCBCEEEC
T ss_pred EEEEEEEECCCCeeEEEEcCccCHHHHHHHHHHHHHCCCHHHeEEEEeC
Confidence 35555655444 66888999999999999999999999999999987
No 138
>3b1l_X E3 ubiquitin-protein ligase parkin; proteasome, ALFA-beta-protein; 1.85A {Mus musculus} PDB: 1mg8_A 2zeq_A 2knb_A 1iyf_A
Probab=98.58 E-value=2.9e-11 Score=69.55 Aligned_cols=46 Identities=28% Similarity=0.357 Sum_probs=39.8
Q ss_pred eeeeeeecc--eeeeeeccchhHHHHHhhhhhcCCCCCceEEEECeEe
Q 040204 38 HSVRRFRGG--MQIFVESSDTIDNVKAKIQDKKGTPPDQQRQIFWFVF 83 (97)
Q Consensus 38 ~l~i~~~~g--~~i~v~~~~TV~~lK~~I~~~~gip~~~q~Lif~G~~ 83 (97)
.+.++..+| +.+.+++++||++||++|++.+|+|+++|+|+|+|+.
T Consensus 2 ~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~qrL~~~gk~ 49 (76)
T 3b1l_X 2 IVFVRFNSSYGFPVEVDSDTSILQLKEVVAKQQGVPADQLRVIFAGKE 49 (76)
Confidence 345565555 4677899999999999999999999999999999998
No 139
>1v5t_A 8430435I17RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 2kx3_A
Probab=99.01 E-value=6.3e-11 Score=70.85 Aligned_cols=43 Identities=14% Similarity=0.288 Sum_probs=39.4
Q ss_pred CccccCCCCcceEEE---ECCEEeCCCCCCccceec-ccceeeeeee
Q 040204 1 IEDKEEILRDQQRFI---FAGKRLEDGRTLVDYNIH-GSTLHSVRRF 43 (97)
Q Consensus 1 i~~~~gip~~~Q~L~---~~g~~L~d~~tL~~y~I~-~sti~l~i~~ 43 (97)
|++++|||+++|+|+ |+|++|+|+.+|++|+|. +++|+|+.+.
T Consensus 37 I~~~~gip~~~QkLi~~k~~Gk~L~D~~~L~~~~i~~g~~l~l~~~~ 83 (90)
T 1v5t_A 37 LKTLTGVLPERQKLLGLKVKGKPAENDVKLGALKLKPNTKIMMMGTR 83 (90)
T ss_dssp HHHHTCCCTTTCEEESCEETTEECCTTSBHHHHTCCTTEEEEEECCC
T ss_pred HHHHHCcCHHHeEEEeeccCCcCcCCCCCHHHcCCCCCCEEEEEecC
Confidence 467899999999999 999999999999999999 9999998754
No 140
>2kdb_A Homocysteine-responsive endoplasmic reticulum- resident ubiquitin-like domain member...; UBL domain, membrane, polymorphism, transmembrane; NMR {Homo sapiens}
Probab=99.00 E-value=5.6e-11 Score=72.60 Aligned_cols=36 Identities=25% Similarity=0.342 Sum_probs=32.9
Q ss_pred cCCC-CcceEEEECCEEeCCCCCCccc--eec-ccceeee
Q 040204 5 EEIL-RDQQRFIFAGKRLEDGRTLVDY--NIH-GSTLHSV 40 (97)
Q Consensus 5 ~gip-~~~Q~L~~~g~~L~d~~tL~~y--~I~-~sti~l~ 40 (97)
+|+| +++|||+|+|+.|+|+.+|++| +|. +++|+|+
T Consensus 60 ~g~pp~~~QrLIy~Gk~L~D~~tL~~y~~~I~~~~tihLv 99 (99)
T 2kdb_A 60 PSKPLTKDQRLVYSGRLLPDHLQLKDILRKQDEYHMVHLV 99 (99)
T ss_dssp TTCCCTTTCCEEETTEEECTTSBTHHHHTTTCSEEEEEEC
T ss_pred cCCCChhhEEEEECCEECCCCCCHHHHhcCCCCCCEEEeC
Confidence 5666 5999999999999999999999 999 9999974
No 141
>1wxv_A BAG-family molecular chaperone regulator-1; structural genomics, apoptosis, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=98.99 E-value=8.3e-11 Score=70.29 Aligned_cols=44 Identities=23% Similarity=0.410 Sum_probs=38.7
Q ss_pred CccccCCCCcceEEEECCEEeCC-CCCCccceec-ccceeeeeeee
Q 040204 1 IEDKEEILRDQQRFIFAGKRLED-GRTLVDYNIH-GSTLHSVRRFR 44 (97)
Q Consensus 1 i~~~~gip~~~Q~L~~~g~~L~d-~~tL~~y~I~-~sti~l~i~~~ 44 (97)
|++.+|+|+++|+|+|+|+.|+| +.+|++|+|. +++|+|+.+..
T Consensus 41 i~~~~gip~~~qrL~~~Gk~L~D~~~~L~~~~i~~g~~i~l~~~~~ 86 (92)
T 1wxv_A 41 VEEVIGVPQSFQKLIFKGKSLKEMETPLSALGIQDGCRVMLIGKKN 86 (92)
T ss_dssp HHHHTCCCTTTCEEEETTEEECCSSSBHHHHTCCSSEEEEEESCCS
T ss_pred HHHHHCcCHHHEEEEECCeecCCCcccHHHCCCCCCCEEEEEecCC
Confidence 35678999999999999999998 6689999999 99999987643
No 142
>2kjr_A CG11242; UBL, ubiquitin, ubiquitin-like, structural genomics, PSI-2, protein structure initiative; NMR {Drosophila melanogaster}
Probab=98.97 E-value=1.1e-10 Score=70.76 Aligned_cols=40 Identities=18% Similarity=0.130 Sum_probs=35.1
Q ss_pred CccccCCCCcceEEEEC--CE---Ee-CCCCCCccceec-ccceeee
Q 040204 1 IEDKEEILRDQQRFIFA--GK---RL-EDGRTLVDYNIH-GSTLHSV 40 (97)
Q Consensus 1 i~~~~gip~~~Q~L~~~--g~---~L-~d~~tL~~y~I~-~sti~l~ 40 (97)
|++++|||+++|||+|+ |+ .| +|+++|++|||+ +++|+|+
T Consensus 47 I~~~~GiP~~~QrL~~~~~g~~~~~L~~D~~tL~~Y~i~~gstihlv 93 (95)
T 2kjr_A 47 LEILTGGCAGTMKVQVFKGDTCVSTMDNNDAQLGYYANSDGLRLHVV 93 (95)
T ss_dssp HHHHHCSCTTTEEEEEEETTEEEEECCCTTSBHHHHCCSSSCEEEEE
T ss_pred HHHHHCcCHHHeEEEEecCCcccceeCCCCCCHhHCCcCCCCEEEEE
Confidence 46789999999999997 55 45 899999999999 9999975
No 143
>3u5e_m 60S ribosomal protein L40; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3u5i_m 4b6a_m 4a18_K 4a19_K 4a1b_K 4a1d_K 4adx_5 3izc_p 3izs_p 3iz5_p 3izr_p
Probab=98.95 E-value=7.2e-11 Score=74.80 Aligned_cols=46 Identities=57% Similarity=0.673 Sum_probs=0.0
Q ss_pred eeeeeeecc--eeeeeeccchhHHHHHhhhhhcCCCCCceEEEECeEe
Q 040204 38 HSVRRFRGG--MQIFVESSDTIDNVKAKIQDKKGTPPDQQRQIFWFVF 83 (97)
Q Consensus 38 ~l~i~~~~g--~~i~v~~~~TV~~lK~~I~~~~gip~~~q~Lif~G~~ 83 (97)
.+.++..+| +.+.|++++||.+||++|++.+|+|+++|+|+|+|++
T Consensus 2 ~I~Vk~~~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~ 49 (128)
T 3u5e_m 2 QIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQ 49 (128)
T ss_dssp ------------------------------------------------
T ss_pred EEEEEeCCCCEEEEEeCCCCCHHHHHHHHHHHhCcChHHEEEEECCEE
Confidence 345555555 5677899999999999999999999999999999998
No 144
>1t0y_A Tubulin folding cofactor B; ubiquitin-like, cytoskeleton, microtubule, CESG, structural genomics, protein structure initiative, PSI; NMR {Caenorhabditis elegans} SCOP: d.15.1.1
Probab=98.94 E-value=1.6e-09 Score=68.14 Aligned_cols=47 Identities=15% Similarity=0.115 Sum_probs=40.3
Q ss_pred cceeeeeeeecc---eeeeeeccchhHHHHHhhhhhcCCCCCceEEEECe
Q 040204 35 STLHSVRRFRGG---MQIFVESSDTIDNVKAKIQDKKGTPPDQQRQIFWF 81 (97)
Q Consensus 35 sti~l~i~~~~g---~~i~v~~~~TV~~lK~~I~~~~gip~~~q~Lif~G 81 (97)
+.|.+.++..++ .++.+++++||++||++|++++|+||++|||+|.|
T Consensus 5 ~~v~l~V~~~~~~~~~e~~v~~~~TV~~lK~ki~~~~Gip~~~qrL~~~g 54 (122)
T 1t0y_A 5 EVYDLEITTNATDFPMEKKYPAGMSLNDLKKKLELVVGTTVDSMRIQLFD 54 (122)
T ss_dssp CEEEEEEEESSCCSCEEEEEETTSBHHHHHHHHHHHHCCCTTTEEEEEEC
T ss_pred CEEEEEEEECCCCccEEEEeCCCCcHHHHHHHHHHHhCCCHHHeEEEEec
Confidence 356666666554 66888999999999999999999999999999988
No 145
>2kj6_A Tubulin folding cofactor B; methods development, NESG, solution PSI-2, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana}
Probab=98.93 E-value=1e-10 Score=71.18 Aligned_cols=42 Identities=17% Similarity=0.152 Sum_probs=36.1
Q ss_pred CccccCCCCcceEEEECC---EE----eCCCCCCccceec-ccceeeeee
Q 040204 1 IEDKEEILRDQQRFIFAG---KR----LEDGRTLVDYNIH-GSTLHSVRR 42 (97)
Q Consensus 1 i~~~~gip~~~Q~L~~~g---~~----L~d~~tL~~y~I~-~sti~l~i~ 42 (97)
|++++|||+++|||+|+| +. ++|+++|++|+|+ +++|+++-+
T Consensus 46 Ie~~~Gip~~~QrLi~~g~~g~~~~~L~~D~~tL~~Y~I~~g~~Ihlvd~ 95 (97)
T 2kj6_A 46 LWKKCGTSVNSMALELYDDSGSKVAVLSDDSRPLGFFSPFDGFRLHIIDL 95 (97)
T ss_dssp HHHHHCCCTTSEEEEEECSSSCBCCCSSGGGSCHHHHCCCSCCEEEEEEC
T ss_pred HHHHHCcCHHHeEEEEecCCCcccceecCCcCCHHHCCCCCCCEEEEEeC
Confidence 467899999999999987 33 4899999999999 999998753
No 146
>3u5c_f 40S ribosomal protein S31; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3u5g_f
Probab=98.92 E-value=1.1e-10 Score=76.22 Aligned_cols=46 Identities=57% Similarity=0.673 Sum_probs=0.0
Q ss_pred eeeeeeecc--eeeeeeccchhHHHHHhhhhhcCCCCCceEEEECeEe
Q 040204 38 HSVRRFRGG--MQIFVESSDTIDNVKAKIQDKKGTPPDQQRQIFWFVF 83 (97)
Q Consensus 38 ~l~i~~~~g--~~i~v~~~~TV~~lK~~I~~~~gip~~~q~Lif~G~~ 83 (97)
.+.++..+| +.+.|++++||.+||++|++.+|+|+++|+|+|+|++
T Consensus 2 qI~VK~l~G~~~~l~V~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~ 49 (152)
T 3u5c_f 2 QIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQ 49 (152)
T ss_dssp ------------------------------------------------
T ss_pred EEEEEeCCCCEEEEEECCCCCHHHHHHHHHHHhCCCHHHEEEEECCEE
Confidence 355555555 5577899999999999999999999999999999998
No 147
>2dzj_A Synaptic glycoprotein SC2; ubiquitin-like fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.91 E-value=1.1e-09 Score=65.37 Aligned_cols=47 Identities=15% Similarity=-0.089 Sum_probs=39.1
Q ss_pred eeeeeeeecce----ee-eeeccchhHHHHHhhhh-hcCCCCCceEEEEC--eEe
Q 040204 37 LHSVRRFRGGM----QI-FVESSDTIDNVKAKIQD-KKGTPPDQQRQIFW--FVF 83 (97)
Q Consensus 37 i~l~i~~~~g~----~i-~v~~~~TV~~lK~~I~~-~~gip~~~q~Lif~--G~~ 83 (97)
+.+.++...|. .+ .|++++||.+||++|++ ++|+||++|+|+|. |++
T Consensus 11 M~I~Vk~~~g~~~~~~l~~v~~~~TV~~lK~~I~~~~~~i~~~~QrL~~~~~Gk~ 65 (88)
T 2dzj_A 11 YEVEILDAKTREKLCFLDKVEPHATIAEIKNLFTKTHPQWYPARQSLRLDPKGKS 65 (88)
T ss_dssp EEEEEEESSSCCCCEEEEEECSSCBHHHHHHHHHHHCSSSCTTTCCEESSTTSCC
T ss_pred EEEEEECCCCCEEeeEEeEcCCCCcHHHHHHHHHHHhcCCChHHeEEEecCCCcC
Confidence 55666666542 36 89999999999999999 48999999999987 888
No 148
>4efo_A Serine/threonine-protein kinase TBK1; ubiquitin like domain, transferase; 1.77A {Homo sapiens}
Probab=98.90 E-value=1.7e-09 Score=65.42 Aligned_cols=37 Identities=14% Similarity=0.088 Sum_probs=35.0
Q ss_pred eeeeeeccchhHHHHHhhhhhcCCCCCceEEEECeEe
Q 040204 47 MQIFVESSDTIDNVKAKIQDKKGTPPDQQRQIFWFVF 83 (97)
Q Consensus 47 ~~i~v~~~~TV~~lK~~I~~~~gip~~~q~Lif~G~~ 83 (97)
..+.+.+++||..+|++|++++|||+++|+|+|+|++
T Consensus 26 h~v~I~~~etv~~~ke~V~eqTgIp~~~Q~LL~eg~~ 62 (94)
T 4efo_A 26 HKIYIHSYNTATIFHELVYKQTKIISSNQELIYEGRR 62 (94)
T ss_dssp EEEEEETTCBHHHHHHHHHHHHCCCGGGEEEEETTEE
T ss_pred EEEEeccchHHHHHHHHHHHHhCCCHHHHHHHhCCCc
Confidence 4578899999999999999999999999999999988
No 149
>1x1m_A Ubiquitin-like protein SB132; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.15.1.1
Probab=98.90 E-value=2.8e-09 Score=65.46 Aligned_cols=50 Identities=16% Similarity=0.046 Sum_probs=40.8
Q ss_pred ccceeeeeeeecc-----eeee--------eecc-chhHHHHHhhhhhc--CCCCCc-eEEEECeEe
Q 040204 34 GSTLHSVRRFRGG-----MQIF--------VESS-DTIDNVKAKIQDKK--GTPPDQ-QRQIFWFVF 83 (97)
Q Consensus 34 ~sti~l~i~~~~g-----~~i~--------v~~~-~TV~~lK~~I~~~~--gip~~~-q~Lif~G~~ 83 (97)
.+.+.+.++..++ +.+. |+++ +||.+||++|++.+ |+|+++ |+|+|+|+.
T Consensus 10 ~~~~~i~Vk~~~~~~~~~~~l~v~~~~~~~v~~~~~TV~~LK~~i~~~~~~gip~~~~qrLi~~Gk~ 76 (107)
T 1x1m_A 10 LSDWHLAVKLADQPLAPKSILQLPETELGEYSLGGYSISFLKQLIAGKLQESVPDPELIDLIYCGRK 76 (107)
T ss_dssp CCSCCEEEEETTCTTSCCEEECCCCCSSCSSCCCCCBHHHHHHHHHHHCTTTCCCSSSEEEEETTEE
T ss_pred CCceEEEEEeCCCCCccEEEEEecCccccccCcccCCHHHHHHHHHHHhccCCChhhcEEEEECCeE
Confidence 4567777776554 3455 3454 99999999999999 999999 999999998
No 150
>2daf_A FLJ35834 protein; hypothetical protein FLJ35834, ubiquitin-like domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.89 E-value=3e-09 Score=66.72 Aligned_cols=55 Identities=13% Similarity=0.043 Sum_probs=44.2
Q ss_pred ccceeeeee-eecc--eeeeeeccchhHHHHHhhhhhcCCCCCceEEEECeEe--CCCcc
Q 040204 34 GSTLHSVRR-FRGG--MQIFVESSDTIDNVKAKIQDKKGTPPDQQRQIFWFVF--GWGSL 88 (97)
Q Consensus 34 ~sti~l~i~-~~~g--~~i~v~~~~TV~~lK~~I~~~~gip~~~q~Lif~G~~--~~~~~ 88 (97)
++++.+.+. .+++ +.+.++++.||.+||+.+.+..++|+++|+|+|+||. |.-+|
T Consensus 13 ~~~itvkv~l~~~~~k~tv~v~~d~TV~dLKe~ls~~~~iP~e~qrLIy~GKiLKD~eTL 72 (118)
T 2daf_A 13 DSLATVKVVLIPVGQEIVIPFKVDTILKYLKDHFSHLLGIPHSVLQIRYSGKILKNNETL 72 (118)
T ss_dssp SSCEEEEEEETTTCCEEEEEECSSSCSHHHHHHHHHHHTCCTTTEEEEETTEEECSSCCH
T ss_pred CccEEEEEEEcCCCcEEEEEeCCCCcHHHHHHHHHhhhCCChHHEEEEECCeEcCCcchH
Confidence 555666654 2233 6678899999999999999999999999999999998 54444
No 151
>2io1_B Small ubiquitin-related modifier 3 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.60A {Homo sapiens} SCOP: d.15.1.1
Probab=98.89 E-value=1.2e-09 Score=65.98 Aligned_cols=46 Identities=20% Similarity=0.403 Sum_probs=43.3
Q ss_pred ccccCCCCcceEEEECCEEeCCCCCCccceec-ccceeeeeeeecce
Q 040204 2 EDKEEILRDQQRFIFAGKRLEDGRTLVDYNIH-GSTLHSVRRFRGGM 47 (97)
Q Consensus 2 ~~~~gip~~~Q~L~~~g~~L~d~~tL~~y~I~-~sti~l~i~~~~g~ 47 (97)
++++|+|+++|+|+|+|++|.++.|+++|++. +++|+++.+..+|.
T Consensus 38 ~~~~gi~~~~~rf~FdG~~l~~~~Tp~dl~medgD~Idv~~~~~GG~ 84 (94)
T 2io1_B 38 CERQGLSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVFQQQTGGV 84 (94)
T ss_dssp HHHHTCCGGGEEEEETTEECCTTCCTTTTTCCTTCEEEEEECCEESC
T ss_pred HHHhCCCcccEEEEECCEEcCCCCCHHHcCCCCCCEEEEEEeccCCC
Confidence 46789999999999999999999999999999 99999999998884
No 152
>1v2y_A 3300001G02RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=98.85 E-value=1.1e-10 Score=72.10 Aligned_cols=37 Identities=22% Similarity=0.412 Sum_probs=33.0
Q ss_pred cceEEEECCEEeC-CCCCCccceec-ccceeeeeeeecc
Q 040204 10 DQQRFIFAGKRLE-DGRTLVDYNIH-GSTLHSVRRFRGG 46 (97)
Q Consensus 10 ~~Q~L~~~g~~L~-d~~tL~~y~I~-~sti~l~i~~~~g 46 (97)
.+|+|+|+|+.|. |+.||++|||. +++||++.++.+.
T Consensus 61 ~q~~Li~~Gk~L~dD~~tL~dygI~~g~~l~lv~~lr~~ 99 (105)
T 1v2y_A 61 RTYHLTSAGEKLTEDRKKLRDYGIRNRDEVSFIKKLGQK 99 (105)
T ss_dssp TTEEEESSSCEECCSSSBHHHHTCCSSEEEEEEECSCSC
T ss_pred eeEEEEeCCcCccCCcCCHHHcCCCCCCEEEEEehhccC
Confidence 4679999999996 66999999999 9999999988765
No 153
>2dzm_A FAS-associated factor 1; ubiquitin-like domain, HFAF1, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.85 E-value=1.6e-10 Score=70.71 Aligned_cols=44 Identities=16% Similarity=0.166 Sum_probs=38.7
Q ss_pred CccccCCCCcceEEEE--CCEEeCCCCCCccceec-ccceeeeeeeec
Q 040204 1 IEDKEEILRDQQRFIF--AGKRLEDGRTLVDYNIH-GSTLHSVRRFRG 45 (97)
Q Consensus 1 i~~~~gip~~~Q~L~~--~g~~L~d~~tL~~y~I~-~sti~l~i~~~~ 45 (97)
|++++|||+++|+|+| +|+ |+|+.+|++|+|+ +++++|+.....
T Consensus 38 I~~~tgIpp~~QkLi~~~~gk-L~D~~tLs~~~I~~gstL~lvl~~~~ 84 (100)
T 2dzm_A 38 LENELQIPVSKMLLKGWKTGD-VEDSTVLKSLHLPKNNSLYVLTPDLP 84 (100)
T ss_dssp HHHHHCCCTTTCCEECCSSSC-CCTTSBHHHHCCCSEEEEEECCSSSC
T ss_pred HHHHHCCChhHeEEEccCCCC-CCCcCCHHHcCCCCCCEEEEEecCCC
Confidence 4678999999999997 676 9999999999999 999999886544
No 154
>1v6e_A Cytoskeleton-associated protein 1; tubulin-specific chaperone B, tubulin folding cofactor B, microtubule, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=98.84 E-value=4.1e-10 Score=67.85 Aligned_cols=42 Identities=17% Similarity=0.196 Sum_probs=36.1
Q ss_pred CccccCCCCcceEEEECC---EE----eCCCCCCccceec-ccceeeeee
Q 040204 1 IEDKEEILRDQQRFIFAG---KR----LEDGRTLVDYNIH-GSTLHSVRR 42 (97)
Q Consensus 1 i~~~~gip~~~Q~L~~~g---~~----L~d~~tL~~y~I~-~sti~l~i~ 42 (97)
|++++|||+++|+|+|+| +. ++|+++|++|||. +++||++-.
T Consensus 38 i~~~~gip~~~qrL~~~~~~g~~~~~l~~D~~tL~~y~i~~g~~l~v~d~ 87 (95)
T 1v6e_A 38 LELVVGSPASCMELELYGADDKFYSKLDQEDALLGSYPVDDGCRIHVIDH 87 (95)
T ss_dssp HHHHTCSCTTTCBCEEECSSSCEEEECCCSSSBTTSSSCCTTCEEEEBCC
T ss_pred HHHHHCCCHHHeEEEEeCCCCccccccCCCcCCHhHCCCCCCCEEEEEEC
Confidence 467899999999999976 54 5899999999999 999998753
No 155
>3ai5_A Yeast enhanced green fluorescent protein, ubiquit; ubiquitin, fusion protein, fluore protein, transcription; HET: CR2; 1.40A {Aequorea victoria} PDB: 3ako_B*
Probab=98.83 E-value=5.4e-09 Score=75.03 Aligned_cols=55 Identities=47% Similarity=0.573 Sum_probs=46.1
Q ss_pred ccceeeeeeeecc--eeeeeeccchhHHHHHhhhhhcCCCCCceEEEECeEe--CCCcc
Q 040204 34 GSTLHSVRRFRGG--MQIFVESSDTIDNVKAKIQDKKGTPPDQQRQIFWFVF--GWGSL 88 (97)
Q Consensus 34 ~sti~l~i~~~~g--~~i~v~~~~TV~~lK~~I~~~~gip~~~q~Lif~G~~--~~~~~ 88 (97)
...+.+.++..+| +.+.|++++||++||++|++++|+|+++|+|+|+|++ |..+|
T Consensus 231 ~~~MqI~VKtl~Gk~~~leV~~s~TV~dLK~kI~~~~GIp~~~QRLi~~Gk~L~D~~TL 289 (307)
T 3ai5_A 231 TGSMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL 289 (307)
T ss_dssp CCCEEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCEEEETTEECCTTSBT
T ss_pred CCeEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcChHHEEEEeCCeecCCCCCH
Confidence 3467777877655 5677899999999999999999999999999999998 44444
No 156
>2dzj_A Synaptic glycoprotein SC2; ubiquitin-like fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.82 E-value=4.8e-10 Score=66.95 Aligned_cols=38 Identities=21% Similarity=0.249 Sum_probs=34.0
Q ss_pred cc-ccCCCCcceEEEEC--CEEeCCCCCCccceec-ccceee
Q 040204 2 ED-KEEILRDQQRFIFA--GKRLEDGRTLVDYNIH-GSTLHS 39 (97)
Q Consensus 2 ~~-~~gip~~~Q~L~~~--g~~L~d~~tL~~y~I~-~sti~l 39 (97)
++ ++|+|+++|+|+|. |+.|+|+.+|++|+|. +++|++
T Consensus 44 ~~~~~~i~~~~QrL~~~~~Gk~L~D~~tL~~y~i~~~stl~~ 85 (88)
T 2dzj_A 44 TKTHPQWYPARQSLRLDPKGKSLKDEDVLQKLPVGTTATLYF 85 (88)
T ss_dssp HHHCSSSCTTTCCEESSTTSCCCCTTCBTTTSSCCSEEEEEE
T ss_pred HHHhcCCChHHeEEEecCCCcCcCCCCCHHHcCCCCCCEEEE
Confidence 44 58999999999986 9999999999999999 998765
No 157
>1wia_A Hypothetical ubiquitin-like protein (riken cDNA 2010008E23); 'structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=98.82 E-value=7e-09 Score=62.12 Aligned_cols=47 Identities=17% Similarity=0.184 Sum_probs=40.8
Q ss_pred ccceeeeeeeecc--eeeeeeccchhHHHHHhhhhhcCCCCCceEEEECeEe
Q 040204 34 GSTLHSVRRFRGG--MQIFVESSDTIDNVKAKIQDKKGTPPDQQRQIFWFVF 83 (97)
Q Consensus 34 ~sti~l~i~~~~g--~~i~v~~~~TV~~lK~~I~~~~gip~~~q~Lif~G~~ 83 (97)
...+.+.++..+| +.+.|++++||.+||++|++.+ +++|+|+|+|+.
T Consensus 5 ~~~m~i~Vk~~~g~~~~~~v~~~~TV~~LK~~i~~~~---~~~qrLi~~Gk~ 53 (95)
T 1wia_A 5 SSGINVRLKFLNDTEELAVARPEDTVGTLKSKYFPGQ---ESQMKLIYQGRL 53 (95)
T ss_dssp CCSEEEEEEETTTEEEEEEECSSSBHHHHHHHHSSST---TTTCEEEETTEE
T ss_pred CCeEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHhhC---cCcEEEEECCEE
Confidence 4567888887655 5678899999999999999988 899999999998
No 158
>1wia_A Hypothetical ubiquitin-like protein (riken cDNA 2010008E23); 'structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=98.82 E-value=1.8e-09 Score=64.79 Aligned_cols=38 Identities=34% Similarity=0.567 Sum_probs=34.7
Q ss_pred CcceEEEECCEEeCCC-CCCccceec-ccceeeeeeeecc
Q 040204 9 RDQQRFIFAGKRLEDG-RTLVDYNIH-GSTLHSVRRFRGG 46 (97)
Q Consensus 9 ~~~Q~L~~~g~~L~d~-~tL~~y~I~-~sti~l~i~~~~g 46 (97)
+++|+|+|+|+.|+|+ ++|++|+|. +++||++.+....
T Consensus 42 ~~~qrLi~~Gk~L~D~~~tL~~y~i~~g~~i~l~~~~~~~ 81 (95)
T 1wia_A 42 ESQMKLIYQGRLLQDPARTLSSLNITNNCVIHCHRSPPGA 81 (95)
T ss_dssp TTTCEEEETTEECCCSSCBTTTTTCCTTEEEEEECCCCCC
T ss_pred cCcEEEEECCEEccCCcCCHHHcCCCCCCEEEEEECCCCC
Confidence 7899999999999999 999999999 9999999876543
No 159
>1oqy_A HHR23A, UV excision repair protein RAD23 homolog A; DNA repair, proteasome-mediated degradation, protein- protein interaction, replication; NMR {Homo sapiens} SCOP: a.5.2.1 a.5.2.1 a.189.1.1 d.15.1.1 PDB: 1qze_A 1tp4_A
Probab=98.81 E-value=3.5e-09 Score=77.60 Aligned_cols=55 Identities=18% Similarity=0.192 Sum_probs=45.6
Q ss_pred ccceeeeeeeecc--eeeeeeccchhHHHHHhhhh---hcCCCCCceEEEECeEe--CCCcc
Q 040204 34 GSTLHSVRRFRGG--MQIFVESSDTIDNVKAKIQD---KKGTPPDQQRQIFWFVF--GWGSL 88 (97)
Q Consensus 34 ~sti~l~i~~~~g--~~i~v~~~~TV~~lK~~I~~---~~gip~~~q~Lif~G~~--~~~~~ 88 (97)
...+.+.++...| +.|.|++++||.+||.+|++ ++|+|+++|+|+|+||. |..+|
T Consensus 5 ~~~M~I~VKtl~Gk~~~leV~~~~TV~~LK~~I~~~~~~~gip~~~QrLiy~GK~L~D~~tL 66 (368)
T 1oqy_A 5 SSAVTITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPI 66 (368)
T ss_dssp -CCCCEEEEETTTEEEEECCCTTCBHHHHHHHHHHHTCSSSCCSTEEEEESSSSEECSSSBT
T ss_pred CceEEEEEEeCCCCEEEEEeCCCChHHHHHHHHHHHhCcCCCChhheEEEECCeecCCcCCH
Confidence 3567888888765 56778999999999999999 68899999999999998 44444
No 160
>3ai5_A Yeast enhanced green fluorescent protein, ubiquit; ubiquitin, fusion protein, fluore protein, transcription; HET: CR2; 1.40A {Aequorea victoria} PDB: 3ako_B*
Probab=98.80 E-value=1.5e-09 Score=77.94 Aligned_cols=43 Identities=72% Similarity=0.999 Sum_probs=38.6
Q ss_pred CccccCCCCcceEEEECCEEeCCCCCCccceec-ccceeeeeee
Q 040204 1 IEDKEEILRDQQRFIFAGKRLEDGRTLVDYNIH-GSTLHSVRRF 43 (97)
Q Consensus 1 i~~~~gip~~~Q~L~~~g~~L~d~~tL~~y~I~-~sti~l~i~~ 43 (97)
|++++|+|+++|+|+|+|+.|+|+.+|++|+|. +++|+|+++.
T Consensus 263 I~~~~GIp~~~QRLi~~Gk~L~D~~TLsdygI~~gstL~LvlRL 306 (307)
T 3ai5_A 263 IQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRL 306 (307)
T ss_dssp HHHHHCCCGGGCEEEETTEECCTTSBTGGGTCCTTCEEEEEC--
T ss_pred HHHHHCcChHHEEEEeCCeecCCCCCHHHcCCCCCCEEEEEEeC
Confidence 456789999999999999999999999999999 9999999875
No 161
>2xzm_9 RPS31E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_9
Probab=98.76 E-value=8.4e-10 Score=74.40 Aligned_cols=43 Identities=14% Similarity=0.101 Sum_probs=0.4
Q ss_pred CccccCCCCcceEEEECCEEeCCCCCCccceecccceeeeeeeecce
Q 040204 1 IEDKEEILRDQQRFIFAGKRLEDGRTLVDYNIHGSTLHSVRRFRGGM 47 (97)
Q Consensus 1 i~~~~gip~~~Q~L~~~g~~L~d~~tL~~y~I~~sti~l~i~~~~g~ 47 (97)
|++.+|||+++|+|+|+|++|+|+.+|+ .+++|||++++.+|.
T Consensus 30 I~~keGIP~~qQRLIf~GK~LeD~~TLs----~~STLhLvlRLrGG~ 72 (189)
T 2xzm_9 30 ISQDMGFEIDMMTLVNNGFIAPNTELVT----DDVTYYLSLKLLGGK 72 (189)
T ss_dssp ----------------------------------------------C
T ss_pred HHHHhCcChhHEEEEecCeECCCCCccc----CCCEEEEEEecCCCc
Confidence 5778999999999999999999999998 679999999998874
No 162
>1t0y_A Tubulin folding cofactor B; ubiquitin-like, cytoskeleton, microtubule, CESG, structural genomics, protein structure initiative, PSI; NMR {Caenorhabditis elegans} SCOP: d.15.1.1
Probab=98.76 E-value=2e-09 Score=67.69 Aligned_cols=43 Identities=19% Similarity=0.266 Sum_probs=36.7
Q ss_pred CccccCCCCcceEEEECC---E---E-eCCCCCCccceec-ccceeeeeee
Q 040204 1 IEDKEEILRDQQRFIFAG---K---R-LEDGRTLVDYNIH-GSTLHSVRRF 43 (97)
Q Consensus 1 i~~~~gip~~~Q~L~~~g---~---~-L~d~~tL~~y~I~-~sti~l~i~~ 43 (97)
|++++|||+++|||+|.| + . ++|+++|++|||. +++|||+-..
T Consensus 37 i~~~~Gip~~~qrL~~~g~~~~~~~~l~~D~~tL~~y~i~~g~~ihvvd~~ 87 (122)
T 1t0y_A 37 LELVVGTTVDSMRIQLFDGDDQLKGELTDGAKSLKDLGVRDGYRIHAVDVT 87 (122)
T ss_dssp HHHHHCCCTTTEEEEEECSSSSEEEECCCCSSBTTTTTCCSSEEEEEEECT
T ss_pred HHHHhCCCHHHeEEEEecCCCccccccCCCcCCHHHCCCCCCCEEEEEeCC
Confidence 456799999999999976 4 3 4899999999999 9999998643
No 163
>2io0_B Small ubiquitin-related modifier 2 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.30A {Homo sapiens} SCOP: d.15.1.1
Probab=98.76 E-value=6.9e-09 Score=62.36 Aligned_cols=46 Identities=20% Similarity=0.403 Sum_probs=43.1
Q ss_pred ccccCCCCcceEEEECCEEeCCCCCCccceec-ccceeeeeeeecce
Q 040204 2 EDKEEILRDQQRFIFAGKRLEDGRTLVDYNIH-GSTLHSVRRFRGGM 47 (97)
Q Consensus 2 ~~~~gip~~~Q~L~~~g~~L~d~~tL~~y~I~-~sti~l~i~~~~g~ 47 (97)
+++.|+|+++++|+|+|++|.++.|.++|++. +++|+++....+|.
T Consensus 36 ~~~~gi~~~~~rf~FdG~~l~~~~Tp~dl~medgD~Idv~~~q~gg~ 82 (91)
T 2io0_B 36 CERQGLSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVFQQQTGGV 82 (91)
T ss_dssp HHHTTCCSTTEEEEETTEECCTTCCTTTTTCCTTEEEEEEECCCCCC
T ss_pred HHHhCCCcccEEEEECCEEcCCCCCHHHcCCCCCCEEEEEEeccCCc
Confidence 46789999999999999999999999999999 99999999988884
No 164
>1wf9_A NPL4 family protein; beta-grAsp fold like domain, hypothetical protein, structural genomics, NPPSFA; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=98.75 E-value=4.4e-09 Score=64.70 Aligned_cols=48 Identities=25% Similarity=0.151 Sum_probs=42.2
Q ss_pred cceeeeeeeecc-eeeeee-ccchhHHHHHhhhhhcCCCCCceEEEECeE
Q 040204 35 STLHSVRRFRGG-MQIFVE-SSDTIDNVKAKIQDKKGTPPDQQRQIFWFV 82 (97)
Q Consensus 35 sti~l~i~~~~g-~~i~v~-~~~TV~~lK~~I~~~~gip~~~q~Lif~G~ 82 (97)
+.+.+.++..+| ..|.|+ +++||.+||++|++++|+|+++|+|+|.|+
T Consensus 6 ~~M~irvrs~~G~~~v~v~~~~~Tv~~LK~kI~~~~gip~~~QrL~~~~~ 55 (107)
T 1wf9_A 6 SGTMLRVRSRDGLERVSVDGPHITVSQLKTLIQDQLQIPIHNQTLSTNRN 55 (107)
T ss_dssp CCEEEEEECSSCEEEEEECCTTSBHHHHHHHHHHHSCCCTTTCCCBSSGG
T ss_pred CeEEEEEECCCCCEEEEECCCCCcHHHHHHHHHHHhCcCcccCEEEECCc
Confidence 456777877777 458888 999999999999999999999999999988
No 165
>1v86_A DNA segment, CHR 7, wayne state university 128, expressed; ubiquitin fold, structural genomics, D7WSU128E protein; HET: DNA; NMR {Mus musculus} SCOP: d.15.1.1
Probab=98.75 E-value=3e-10 Score=68.57 Aligned_cols=42 Identities=17% Similarity=0.295 Sum_probs=36.9
Q ss_pred CccccCCCCcceEEEECCEEeCCCCCCccceec-ccceeeeeee
Q 040204 1 IEDKEEILRDQQRFIFAGKRLEDGRTLVDYNIH-GSTLHSVRRF 43 (97)
Q Consensus 1 i~~~~gip~~~Q~L~~~g~~L~d~~tL~~y~I~-~sti~l~i~~ 43 (97)
|++.+|+|+++|+|+|.|+.| |+.+|++|+|. +++|+|+.+.
T Consensus 46 I~~~tgip~~~QrL~~~Gk~L-dd~tL~~~~i~~g~~i~lv~~~ 88 (95)
T 1v86_A 46 IHSITGLPPAMQKVMYKGLVP-EDKTLREIKVTSGAKIMVVGST 88 (95)
T ss_dssp HHHHHCSCSTTCCCBSSSBCC-SSSBHHHHCCCTTEEEEECCSS
T ss_pred HHHHHCcCHHHeEEEECCeeC-CcCcHHHCCCCCCCEEEEEecc
Confidence 456789999999999999999 45599999999 9999998754
No 166
>3shq_A UBLCP1; phosphatase, hydrolase; 1.96A {Drosophila melanogaster}
Probab=98.73 E-value=6.6e-09 Score=74.85 Aligned_cols=49 Identities=14% Similarity=0.282 Sum_probs=42.5
Q ss_pred cceeeeeeeecc-eeeeeeccchhHHHHHhhhhhcCCCCCceEEE---ECeEe
Q 040204 35 STLHSVRRFRGG-MQIFVESSDTIDNVKAKIQDKKGTPPDQQRQI---FWFVF 83 (97)
Q Consensus 35 sti~l~i~~~~g-~~i~v~~~~TV~~lK~~I~~~~gip~~~q~Li---f~G~~ 83 (97)
.++.+.++..|. +.|.|++++||.+||++|++++|+||++|+|+ |+|++
T Consensus 4 ~~i~i~Vk~~g~~~~v~v~~~~Tv~~lK~~I~~~tgVpp~~QkLi~~k~~Gk~ 56 (320)
T 3shq_A 4 KEVVVIVKWSGKEYPVDLTDQDTVEVLRHEIFRKTQVRPERQKLLNLKYKGKT 56 (320)
T ss_dssp CEEEEEEEETTEEEEEEEETTSBHHHHHHHHHHHHCCCGGGCEETTCBSSSSB
T ss_pred ceEEEEEEECCEEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEeecccCCcc
Confidence 456777776444 56888999999999999999999999999999 89988
No 167
>2d07_B Ubiquitin-like protein SMT3B; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 2rpq_A 2awt_A 2io3_B 2iyd_B 1u4a_A 2k1f_A
Probab=98.72 E-value=8.2e-09 Score=62.15 Aligned_cols=45 Identities=20% Similarity=0.401 Sum_probs=39.8
Q ss_pred ccccCCCCcceEEEECCEEeCCCCCCccceec-ccceeeeeeeecc
Q 040204 2 EDKEEILRDQQRFIFAGKRLEDGRTLVDYNIH-GSTLHSVRRFRGG 46 (97)
Q Consensus 2 ~~~~gip~~~Q~L~~~g~~L~d~~tL~~y~I~-~sti~l~i~~~~g 46 (97)
+++.|+|+++++|+|.|++|.++.|.++|++. +++|+++.+..||
T Consensus 48 ~~~~gi~~~~~rf~fdG~~l~~~~Tp~dl~medgD~Idv~~~q~GG 93 (93)
T 2d07_B 48 CERQGLSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVFQQQTGG 93 (93)
T ss_dssp HHHHTCCGGGEEEEETTEECCTTCCTTTTTCCTTEEEEEEECC---
T ss_pred HHHhCCCccceEEEECCEEcCCCCCHHHcCCCCCCEEEEEeeccCC
Confidence 46789999999999999999999999999999 9999999987765
No 168
>1oqy_A HHR23A, UV excision repair protein RAD23 homolog A; DNA repair, proteasome-mediated degradation, protein- protein interaction, replication; NMR {Homo sapiens} SCOP: a.5.2.1 a.5.2.1 a.189.1.1 d.15.1.1 PDB: 1qze_A 1tp4_A
Probab=98.72 E-value=3.8e-09 Score=77.43 Aligned_cols=43 Identities=28% Similarity=0.479 Sum_probs=37.9
Q ss_pred ccCCCCcceEEEECCEEeCCCCCCccceec-ccce-eeeeeeecc
Q 040204 4 KEEILRDQQRFIFAGKRLEDGRTLVDYNIH-GSTL-HSVRRFRGG 46 (97)
Q Consensus 4 ~~gip~~~Q~L~~~g~~L~d~~tL~~y~I~-~sti-~l~i~~~~g 46 (97)
++|||+++|+|+|+||.|+|+++|++|+|+ +++| +++.+..++
T Consensus 43 ~~gip~~~QrLiy~GK~L~D~~tL~dygI~~gstIv~lv~k~~~~ 87 (368)
T 1oqy_A 43 RDAFPVAGQKLIYAGKILSDDVPIRDYRIDEKNFVVVMVTKTKAG 87 (368)
T ss_dssp SSSCCSTEEEEESSSSEECSSSBTTTTCCCTTSCEEEEEECCCSS
T ss_pred cCCCChhheEEEECCeecCCcCCHHHcCCCCCCEEEEEEecCCCC
Confidence 578999999999999999999999999999 9998 666665544
No 169
>2eke_C Ubiquitin-like protein SMT3; UBC9, SUMO binding motif, SBM, ligase/protein binding complex; 1.90A {Saccharomyces cerevisiae} SCOP: d.15.1.1
Probab=98.64 E-value=2e-08 Score=62.01 Aligned_cols=45 Identities=22% Similarity=0.439 Sum_probs=39.7
Q ss_pred ccccCCCCcceEEEECCEEeCCCCCCccceec-ccceeeeeeeecc
Q 040204 2 EDKEEILRDQQRFIFAGKRLEDGRTLVDYNIH-GSTLHSVRRFRGG 46 (97)
Q Consensus 2 ~~~~gip~~~Q~L~~~g~~L~d~~tL~~y~I~-~sti~l~i~~~~g 46 (97)
+++.|+++++++|+|+|++|.++.|.++|++. +++|+++.+..||
T Consensus 61 ~ek~gi~~~~~rF~FdG~rl~~~~Tp~dl~medgD~Idv~~~q~GG 106 (106)
T 2eke_C 61 AKRQGKEMDSLRFLYDGIRIQADQTPEDLDMEDNDIIEAHREQIGG 106 (106)
T ss_dssp HHHHTCCGGGEEEEETTEECCTTCCTTTTTCCTTEEEEEEECC---
T ss_pred HHHhCCCcccEEEEECCeEcCCCCCHHHcCCCCCCEEEEEeecccC
Confidence 46789999999999999999999999999999 9999999987765
No 170
>1wm3_A Ubiquitin-like protein SMT3B; ubiquitin fold, half-open barrel, two helices, protein transport; 1.20A {Homo sapiens} SCOP: d.15.1.1 PDB: 1wm2_A 3uin_B 3uio_B 2ckh_B
Probab=98.63 E-value=2.1e-08 Score=57.54 Aligned_cols=40 Identities=18% Similarity=0.351 Sum_probs=36.9
Q ss_pred ccccCCCCcceEEEECCEEeCCCCCCccceec-ccceeeee
Q 040204 2 EDKEEILRDQQRFIFAGKRLEDGRTLVDYNIH-GSTLHSVR 41 (97)
Q Consensus 2 ~~~~gip~~~Q~L~~~g~~L~d~~tL~~y~I~-~sti~l~i 41 (97)
+++.|+|+++++|+|+|++|.++.|.++|++. +++|+++.
T Consensus 32 ~~~~gi~~~~~rf~fdG~~l~~~~Tp~~l~medgD~Idv~~ 72 (72)
T 1wm3_A 32 CERQGLSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVFQ 72 (72)
T ss_dssp HHHHTCCTTTCEEEETTEECCTTCCTTTTTCCTTEEEEEEC
T ss_pred HHHhCCCcceEEEEECCEEcCCCCCHHHcCCCCCCEEEEEC
Confidence 46789999999999999999999999999999 99999863
No 171
>2kzr_A Ubiquitin thioesterase OTU1; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative, hydrolase; NMR {Mus musculus}
Probab=98.61 E-value=3e-08 Score=58.48 Aligned_cols=44 Identities=18% Similarity=0.360 Sum_probs=37.8
Q ss_pred eeeeeeecce-eee-eeccchhHHHHHhhhhhcCCCCCceEEEECe
Q 040204 38 HSVRRFRGGM-QIF-VESSDTIDNVKAKIQDKKGTPPDQQRQIFWF 81 (97)
Q Consensus 38 ~l~i~~~~g~-~i~-v~~~~TV~~lK~~I~~~~gip~~~q~Lif~G 81 (97)
.+.++..+|. .+. +++++||.+||++|++++|+|+++|+|+|++
T Consensus 2 ~i~vr~~~G~~~v~~l~~~~Tv~~Lk~~I~~~~gi~~~~qrL~~~~ 47 (86)
T 2kzr_A 2 RVRCKAKGGTHLLQGLSSRTRLRELQGQIAAITGIAPGSQRILVGY 47 (86)
T ss_dssp CEEEEETTEEEEECSCCTTCBHHHHHHHHHHHTCCCTTTCCCEESS
T ss_pred EEEEEcCCCCEEeeecCCCCCHHHHHHHHHHHhCCCccceEEEeCC
Confidence 4667777774 366 7899999999999999999999999999985
No 172
>1wz0_A Ubiquitin-like protein SMT3B; SUMO-2, ubiquitin-like molecule, structural genomics, sentrin2, NPPFSA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=98.52 E-value=1.5e-08 Score=62.31 Aligned_cols=45 Identities=18% Similarity=0.355 Sum_probs=42.2
Q ss_pred ccccCCCCcceEEEECCEEeCCCCCCccceec-ccceeeeeeeecc
Q 040204 2 EDKEEILRDQQRFIFAGKRLEDGRTLVDYNIH-GSTLHSVRRFRGG 46 (97)
Q Consensus 2 ~~~~gip~~~Q~L~~~g~~L~d~~tL~~y~I~-~sti~l~i~~~~g 46 (97)
+++.|+|+++++|+|.|++|.++.|.++|++. +++|+++....||
T Consensus 55 ~ek~gi~~~~~rf~FdG~~l~~~~Tp~dl~medgD~Idv~~~q~GG 100 (104)
T 1wz0_A 55 CERQGLSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVFQQQTSG 100 (104)
T ss_dssp HHHHTCCTTTSCEESSSSBCCTTSCTTTTTCCTTEEEEECCCCCCC
T ss_pred HHHhCCCcceEEEEECCEEcCCCCCHHHcCCCCCCEEEEEEeccCC
Confidence 46789999999999999999999999999999 9999999988877
No 173
>2io1_B Small ubiquitin-related modifier 3 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.60A {Homo sapiens} SCOP: d.15.1.1
Probab=98.48 E-value=3.2e-07 Score=55.25 Aligned_cols=50 Identities=12% Similarity=0.066 Sum_probs=42.9
Q ss_pred ccceeeeeeeecc--eeeeeeccchhHHHHHhhhhhcCCCCCceEEEECeEe
Q 040204 34 GSTLHSVRRFRGG--MQIFVESSDTIDNVKAKIQDKKGTPPDQQRQIFWFVF 83 (97)
Q Consensus 34 ~sti~l~i~~~~g--~~i~v~~~~TV~~lK~~I~~~~gip~~~q~Lif~G~~ 83 (97)
+..|.+.++...| +.+.|++++++..|++.++++.|+|+++++++|.|++
T Consensus 5 ~~~i~ikVk~~~g~~i~~~v~~~t~l~kl~~~y~~~~gi~~~~~rf~FdG~~ 56 (94)
T 2io1_B 5 NDHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQP 56 (94)
T ss_dssp -CEEEEEEECTTSCEEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEEETTEE
T ss_pred CCeEEEEEECCCCCEEEEEECCCCHHHHHHHHHHHHhCCCcccEEEEECCEE
Confidence 3456677776566 5577899999999999999999999999999999999
No 174
>3shq_A UBLCP1; phosphatase, hydrolase; 1.96A {Drosophila melanogaster}
Probab=98.48 E-value=1.4e-08 Score=73.13 Aligned_cols=45 Identities=18% Similarity=0.305 Sum_probs=39.3
Q ss_pred CccccCCCCcceEEE---ECCEEeCCCCCCccceec-ccceeeeeeeec
Q 040204 1 IEDKEEILRDQQRFI---FAGKRLEDGRTLVDYNIH-GSTLHSVRRFRG 45 (97)
Q Consensus 1 i~~~~gip~~~Q~L~---~~g~~L~d~~tL~~y~I~-~sti~l~i~~~~ 45 (97)
|++++|||+++|+|+ |+|+.|+|+.+|++|+|+ |++|+|+.+...
T Consensus 34 I~~~tgVpp~~QkLi~~k~~Gk~l~D~~~L~~~~ik~g~~l~L~gs~~~ 82 (320)
T 3shq_A 34 IFRKTQVRPERQKLLNLKYKGKTAADNVKISALELKPNFKLMMVGSTEA 82 (320)
T ss_dssp HHHHHCCCGGGCEETTCBSSSSBCCTTSBTTSSCCC--CEEEEECCCC-
T ss_pred HHHHHCcCHHHeEEeecccCCcccCccccHHHcCCCCCCEEEEEccchh
Confidence 467899999999999 899999999999999999 999999876544
No 175
>3a4r_A Nfatc2-interacting protein; ubiquitin fold, coiled coil, cytoplasm, methylation, nucleus, transcription; 1.00A {Mus musculus} PDB: 3a4s_C 3rd2_A
Probab=98.46 E-value=6.1e-08 Score=56.60 Aligned_cols=39 Identities=18% Similarity=0.350 Sum_probs=36.4
Q ss_pred ccccCCCCcceEEEECCEEeCCCCCCccceec-ccceeee
Q 040204 2 EDKEEILRDQQRFIFAGKRLEDGRTLVDYNIH-GSTLHSV 40 (97)
Q Consensus 2 ~~~~gip~~~Q~L~~~g~~L~d~~tL~~y~I~-~sti~l~ 40 (97)
+++.|+|+++++|+|.|++|.++.|.++|++. +++|+++
T Consensus 39 ~~~~gi~~~~~rf~fdG~~l~~~~Tp~~l~medgD~Idv~ 78 (79)
T 3a4r_A 39 EEAMGLSGHKLSFFFDGTKLSGKELPADLGLESGDLIEVW 78 (79)
T ss_dssp HHHHTCTTCCCEEEETTEECCSCCCHHHHTCCTTCEEEEE
T ss_pred HHHhCCCcccEEEEECCEEcCCCCCHHHcCCCCCCEEEEe
Confidence 46789999999999999999999999999999 9999875
No 176
>2k8h_A Small ubiquitin protein; SUMO, post-translational modifier, signaling protein; NMR {Trypanosoma brucei}
Probab=98.43 E-value=2e-08 Score=62.38 Aligned_cols=47 Identities=21% Similarity=0.497 Sum_probs=42.6
Q ss_pred ccccCCCCcceEEEECCEEeCCCCCCccceec-ccceeeeeeeeccee
Q 040204 2 EDKEEILRDQQRFIFAGKRLEDGRTLVDYNIH-GSTLHSVRRFRGGMQ 48 (97)
Q Consensus 2 ~~~~gip~~~Q~L~~~g~~L~d~~tL~~y~I~-~sti~l~i~~~~g~~ 48 (97)
+++.|+|+++++|+|.|++|.++.|.++|++. +++|+++....+|.+
T Consensus 57 ~ek~gi~~~~~rfiFdG~~L~~~~Tp~dl~mEDgD~Idv~~~q~Gg~~ 104 (110)
T 2k8h_A 57 CKKQGISRNSVRFLFDGTPIDETKTPEELGMEDDDVIDAMVEQTGGLE 104 (110)
T ss_dssp HHHHTCCSSSCEEESSSCBCCSSSHHHHHHCSSEEEEEEECCCCCC--
T ss_pred HHHhCCCcccEEEEECCEEcCCCCCHHHcCCCCCCEEEEEEcccCccc
Confidence 46789999999999999999999999999999 999999999988853
No 177
>1wf9_A NPL4 family protein; beta-grAsp fold like domain, hypothetical protein, structural genomics, NPPSFA; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=98.43 E-value=1.2e-08 Score=62.77 Aligned_cols=42 Identities=17% Similarity=0.176 Sum_probs=37.0
Q ss_pred CccccCCCCcceEEEECCE-----------E----eCCCCCCccceec-ccceeeeee
Q 040204 1 IEDKEEILRDQQRFIFAGK-----------R----LEDGRTLVDYNIH-GSTLHSVRR 42 (97)
Q Consensus 1 i~~~~gip~~~Q~L~~~g~-----------~----L~d~~tL~~y~I~-~sti~l~i~ 42 (97)
|++++|||+++|+|+|+|+ . ++|+++|++|||. +++|||...
T Consensus 37 I~~~~gip~~~QrL~~~~~~~~~k~~~~~~~l~~~l~d~~tL~~~gi~~G~~L~l~~~ 94 (107)
T 1wf9_A 37 IQDQLQIPIHNQTLSTNRNLLLAKSPSDFLAFTDMADPNLRISSLNLAHGSMVYLAYE 94 (107)
T ss_dssp HHHHSCCCTTTCCCBSSGGGGTCCSHHHHTTCCSSCCTTCBGGGTCCCTTCEEECCCS
T ss_pred HHHHhCcCcccCEEEECCccccccCccccccccccCCCCCCHHHCCCCCCCEEEEEeC
Confidence 4567899999999999888 4 5899999999999 999998765
No 178
>2io0_B Small ubiquitin-related modifier 2 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.30A {Homo sapiens} SCOP: d.15.1.1
Probab=98.35 E-value=1.1e-06 Score=52.60 Aligned_cols=49 Identities=12% Similarity=0.064 Sum_probs=42.6
Q ss_pred cceeeeeeeecc--eeeeeeccchhHHHHHhhhhhcCCCCCceEEEECeEe
Q 040204 35 STLHSVRRFRGG--MQIFVESSDTIDNVKAKIQDKKGTPPDQQRQIFWFVF 83 (97)
Q Consensus 35 sti~l~i~~~~g--~~i~v~~~~TV~~lK~~I~~~~gip~~~q~Lif~G~~ 83 (97)
..|.+.++..+| +.+.|++++++..|++..+++.|+|+++++++|.|++
T Consensus 4 ~~i~ikVk~~~g~~v~~~vk~~t~l~kl~~~y~~~~gi~~~~~rf~FdG~~ 54 (91)
T 2io0_B 4 DHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQP 54 (91)
T ss_dssp CEEEEEEECTTSCEEEEEEETTSCTHHHHHHHHHHTTCCSTTEEEEETTEE
T ss_pred CeEEEEEECCCCCEEEEEECCCChHHHHHHHHHHHhCCCcccEEEEECCEE
Confidence 456677776665 5577799999999999999999999999999999999
No 179
>1wm3_A Ubiquitin-like protein SMT3B; ubiquitin fold, half-open barrel, two helices, protein transport; 1.20A {Homo sapiens} SCOP: d.15.1.1 PDB: 1wm2_A 3uin_B 3uio_B 2ckh_B
Probab=98.34 E-value=1e-06 Score=50.37 Aligned_cols=47 Identities=13% Similarity=0.065 Sum_probs=40.1
Q ss_pred eeeeeeeecc--eeeeeeccchhHHHHHhhhhhcCCCCCceEEEECeEe
Q 040204 37 LHSVRRFRGG--MQIFVESSDTIDNVKAKIQDKKGTPPDQQRQIFWFVF 83 (97)
Q Consensus 37 i~l~i~~~~g--~~i~v~~~~TV~~lK~~I~~~~gip~~~q~Lif~G~~ 83 (97)
|.+.++...| ..+.|++++++..|++..+++.|+|+++++++|.|++
T Consensus 2 i~lkV~~~~g~~v~~~v~~~t~l~kl~~~y~~~~gi~~~~~rf~fdG~~ 50 (72)
T 1wm3_A 2 INLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQP 50 (72)
T ss_dssp EEEEEECTTSCEEEEEECTTSCTHHHHHHHHHHHTCCTTTCEEEETTEE
T ss_pred EEEEEECCCCCEEEEEECCCChHHHHHHHHHHHhCCCcceEEEEECCEE
Confidence 3455555555 5577799999999999999999999999999999999
No 180
>2kzr_A Ubiquitin thioesterase OTU1; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative, hydrolase; NMR {Mus musculus}
Probab=98.30 E-value=9e-08 Score=56.41 Aligned_cols=42 Identities=26% Similarity=0.271 Sum_probs=35.7
Q ss_pred CccccCCCCcceEEEEC--CEEeC---CCCCCccceec-ccceeeeee
Q 040204 1 IEDKEEILRDQQRFIFA--GKRLE---DGRTLVDYNIH-GSTLHSVRR 42 (97)
Q Consensus 1 i~~~~gip~~~Q~L~~~--g~~L~---d~~tL~~y~I~-~sti~l~i~ 42 (97)
|++++|||+++|+|+|+ +++|+ |+.+|++|||. |++|++...
T Consensus 30 I~~~~gi~~~~qrL~~~~p~k~l~l~~~~~tL~~~gl~~g~~l~v~~~ 77 (86)
T 2kzr_A 30 IAAITGIAPGSQRILVGYPPECLDLSDRDITLGDLPIQSGDMLIVEED 77 (86)
T ss_dssp HHHHTCCCTTTCCCEESSCCCCCCCCCSSCBTTTSSCCTTCEEECCCC
T ss_pred HHHHhCCCccceEEEeCCCCcccccCCCCCCHHHcCCCCCCEEEEEeC
Confidence 45678999999999996 47774 68999999999 999988754
No 181
>3a4r_A Nfatc2-interacting protein; ubiquitin fold, coiled coil, cytoplasm, methylation, nucleus, transcription; 1.00A {Mus musculus} PDB: 3a4s_C 3rd2_A
Probab=98.23 E-value=3.1e-06 Score=49.19 Aligned_cols=50 Identities=8% Similarity=0.044 Sum_probs=43.2
Q ss_pred ccceeeeeeeecc---eeeeeeccchhHHHHHhhhhhcCCCCCceEEEECeEe
Q 040204 34 GSTLHSVRRFRGG---MQIFVESSDTIDNVKAKIQDKKGTPPDQQRQIFWFVF 83 (97)
Q Consensus 34 ~sti~l~i~~~~g---~~i~v~~~~TV~~lK~~I~~~~gip~~~q~Lif~G~~ 83 (97)
+..|.+.++..+| +.+.|++++++..|+...+++.|+++++++++|.|++
T Consensus 5 ~~~i~ikV~~~~g~~~i~~~i~~~t~l~kl~~~y~~~~gi~~~~~rf~fdG~~ 57 (79)
T 3a4r_A 5 SQELRLRVQGKEKHQMLEISLSPDSPLKVLMSHYEEAMGLSGHKLSFFFDGTK 57 (79)
T ss_dssp CCCEEEEEECSSTTCEEEEEECTTSCHHHHHHHHHHHHTCTTCCCEEEETTEE
T ss_pred CCEEEEEEEeCCCCEEEEEEECCCChHHHHHHHHHHHhCCCcccEEEEECCEE
Confidence 4467777776655 4577799999999999999999999999999999999
No 182
>2d07_B Ubiquitin-like protein SMT3B; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 2rpq_A 2awt_A 2io3_B 2iyd_B 1u4a_A 2k1f_A
Probab=98.17 E-value=4.2e-06 Score=50.11 Aligned_cols=50 Identities=12% Similarity=0.066 Sum_probs=43.3
Q ss_pred ccceeeeeeeecc--eeeeeeccchhHHHHHhhhhhcCCCCCceEEEECeEe
Q 040204 34 GSTLHSVRRFRGG--MQIFVESSDTIDNVKAKIQDKKGTPPDQQRQIFWFVF 83 (97)
Q Consensus 34 ~sti~l~i~~~~g--~~i~v~~~~TV~~lK~~I~~~~gip~~~q~Lif~G~~ 83 (97)
+..|.+.++...| +.+.|++++++..|+...+++.|+++++++++|.|++
T Consensus 15 ~~~i~ikV~~~~g~~i~~~v~~~t~l~kl~~~y~~~~gi~~~~~rf~fdG~~ 66 (93)
T 2d07_B 15 NDHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQP 66 (93)
T ss_dssp CCEEEEEEECTTSCEEEEEEETTSCHHHHHHHHHHHHTCCGGGEEEEETTEE
T ss_pred CCeEEEEEECCCCCEEEEEEccCCHHHHHHHHHHHHhCCCccceEEEECCEE
Confidence 4566777766566 5577799999999999999999999999999999999
No 183
>2k8h_A Small ubiquitin protein; SUMO, post-translational modifier, signaling protein; NMR {Trypanosoma brucei}
Probab=98.13 E-value=3.9e-06 Score=51.92 Aligned_cols=50 Identities=14% Similarity=0.084 Sum_probs=44.4
Q ss_pred ccceeeeeeeecc--eeeeeeccchhHHHHHhhhhhcCCCCCceEEEECeEe
Q 040204 34 GSTLHSVRRFRGG--MQIFVESSDTIDNVKAKIQDKKGTPPDQQRQIFWFVF 83 (97)
Q Consensus 34 ~sti~l~i~~~~g--~~i~v~~~~TV~~lK~~I~~~~gip~~~q~Lif~G~~ 83 (97)
+..|.+.++...| +.+.|++++++..|+...+++.|+|+++++++|.|++
T Consensus 24 ~~~I~IkVk~~~g~~i~fkVk~~t~l~kL~~ay~ek~gi~~~~~rfiFdG~~ 75 (110)
T 2k8h_A 24 TALVAVKVVNADGAEMFFRIKSRTALKKLIDTYCKKQGISRNSVRFLFDGTP 75 (110)
T ss_dssp CCCEEEEEEETTSCCEEEEECTTSSHHHHHHHHHHHHTCCSSSCEEESSSCB
T ss_pred CCeEEEEEECCCCCEEEEEECCCChHHHHHHHHHHHhCCCcccEEEEECCEE
Confidence 5678888877666 5577899999999999999999999999999999998
No 184
>1wjn_A Tubulin-folding protein TBCE; ubiquitin-like domain, progressive motor neuropathy, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=98.11 E-value=6e-06 Score=49.47 Aligned_cols=47 Identities=13% Similarity=0.042 Sum_probs=38.0
Q ss_pred cceeeeeeee---cc--eeeeeeccchhHHHHHhhhhhcCCCCCceEEEECe
Q 040204 35 STLHSVRRFR---GG--MQIFVESSDTIDNVKAKIQDKKGTPPDQQRQIFWF 81 (97)
Q Consensus 35 sti~l~i~~~---~g--~~i~v~~~~TV~~lK~~I~~~~gip~~~q~Lif~G 81 (97)
..+.+.++.. ++ +++.+.++.||.+||.+|+...|+|+..|+|.|.+
T Consensus 8 ~~v~l~I~~~~~~~~~~~e~~l~~~~TV~~LK~~i~~~~gip~~~q~L~~~~ 59 (97)
T 1wjn_A 8 QLLTLKIKCSNQPERQILEKQLPDSMTVQKVKGLLSRLLKVPVSELLLSYES 59 (97)
T ss_dssp CEEEEEEEESSCSSSCCEEEEEETTSBHHHHHHHHHTTTTCCTTTCEEEEEC
T ss_pred ccEEEEEEecCCCCCcEEEEECCCCCCHHHHHHHHHHHHCCChhHeEEEEEc
Confidence 4556656542 33 45677999999999999999999999999999984
No 185
>1wjn_A Tubulin-folding protein TBCE; ubiquitin-like domain, progressive motor neuropathy, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=98.08 E-value=1.2e-06 Score=52.60 Aligned_cols=43 Identities=14% Similarity=0.125 Sum_probs=35.2
Q ss_pred CccccCCCCcceEEEECC-------EEe-CCCCCCccceec-ccceeeeeee
Q 040204 1 IEDKEEILRDQQRFIFAG-------KRL-EDGRTLVDYNIH-GSTLHSVRRF 43 (97)
Q Consensus 1 i~~~~gip~~~Q~L~~~g-------~~L-~d~~tL~~y~I~-~sti~l~i~~ 43 (97)
|++..|+|+..|+|+|.+ ..| +|.++|++|+|. |++|++..+.
T Consensus 42 i~~~~gip~~~q~L~~~~~~~~~~~~~L~~d~~~L~~y~i~~G~~I~V~d~~ 93 (97)
T 1wjn_A 42 LSRLLKVPVSELLLSYESSKMPGREIELENDLQPLQFYSVENGDCLLVRWSG 93 (97)
T ss_dssp HHTTTTCCTTTCEEEEECTTSCSCEEECCCSSSBSGGGTCCTTCEEEEECCS
T ss_pred HHHHHCCChhHeEEEEEcCCCCceeeccCCCcccHhhcCCCCCCEEEEEecC
Confidence 356789999999999962 225 678999999999 9999987743
No 186
>3pge_A SUMO-modified proliferating cell nuclear antigen; DNA replication, DNA binding protein; 2.80A {Saccharomyces cerevisiae}
Probab=98.07 E-value=2.4e-06 Score=57.93 Aligned_cols=45 Identities=22% Similarity=0.439 Sum_probs=41.2
Q ss_pred ccccCCCCcceEEEECCEEeCCCCCCccceec-ccceeeeeeeecc
Q 040204 2 EDKEEILRDQQRFIFAGKRLEDGRTLVDYNIH-GSTLHSVRRFRGG 46 (97)
Q Consensus 2 ~~~~gip~~~Q~L~~~g~~L~d~~tL~~y~I~-~sti~l~i~~~~g 46 (97)
+++.|+|+.++|++|.|++|.++.|.+++++. +++|+++....+|
T Consensus 59 ~er~Gi~~~~~RF~FdG~rI~~~~TP~dL~MEdgD~Idv~~~q~gg 104 (200)
T 3pge_A 59 AKRQGKEMDSLRFLYDGIRIQADQTPEDLDMEDNDIIEAHREQIGG 104 (200)
T ss_dssp HHHHSSCGGGEEEEETTEECCTTCCTTTTTCCTTEEEEEEECCSCC
T ss_pred HHHhCCChhhEEEEECCEEcCCCCCHHHcCCCCCCEEEEEeccCcC
Confidence 46789999999999999999999999999999 9999999876654
No 187
>1wz0_A Ubiquitin-like protein SMT3B; SUMO-2, ubiquitin-like molecule, structural genomics, sentrin2, NPPFSA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=98.04 E-value=4.7e-06 Score=51.00 Aligned_cols=50 Identities=12% Similarity=0.066 Sum_probs=43.6
Q ss_pred ccceeeeeeeecc--eeeeeeccchhHHHHHhhhhhcCCCCCceEEEECeEe
Q 040204 34 GSTLHSVRRFRGG--MQIFVESSDTIDNVKAKIQDKKGTPPDQQRQIFWFVF 83 (97)
Q Consensus 34 ~sti~l~i~~~~g--~~i~v~~~~TV~~lK~~I~~~~gip~~~q~Lif~G~~ 83 (97)
+..|.+.++...| +.+.|++++++..|+...+++.|+++++++++|.|++
T Consensus 22 ~~~I~IkVk~~~g~~i~~kVk~~t~l~kL~~~y~ek~gi~~~~~rf~FdG~~ 73 (104)
T 1wz0_A 22 NDHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQP 73 (104)
T ss_dssp SCCEEEEEECSSSCEEEEEECTTSCHHHHHHHHHHHHTCCTTTSCEESSSSB
T ss_pred CCeEEEEEECCCCCEEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEECCEE
Confidence 4567777776666 5577799999999999999999999999999999998
No 188
>2eke_C Ubiquitin-like protein SMT3; UBC9, SUMO binding motif, SBM, ligase/protein binding complex; 1.90A {Saccharomyces cerevisiae} SCOP: d.15.1.1
Probab=98.03 E-value=1.1e-05 Score=49.60 Aligned_cols=49 Identities=8% Similarity=0.134 Sum_probs=42.9
Q ss_pred ccceeeeeeeecc--eeeeeeccchhHHHHHhhhhhcCCCCCceEEEECeEe
Q 040204 34 GSTLHSVRRFRGG--MQIFVESSDTIDNVKAKIQDKKGTPPDQQRQIFWFVF 83 (97)
Q Consensus 34 ~sti~l~i~~~~g--~~i~v~~~~TV~~lK~~I~~~~gip~~~q~Lif~G~~ 83 (97)
+..|.+.++. .| ..+.|++++++..|+...+++.|+++++++++|.|++
T Consensus 29 ~~~I~IkV~~-~g~~i~fkIk~tt~l~kL~~ay~ek~gi~~~~~rF~FdG~r 79 (106)
T 2eke_C 29 ETHINLKVSD-GSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIR 79 (106)
T ss_dssp CSEEEEEEEC-SSCEEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEEETTEE
T ss_pred CCeEEEEEec-CCcEEEEEeCCCCHHHHHHHHHHHHhCCCcccEEEEECCeE
Confidence 4567777777 66 4567799999999999999999999999999999999
No 189
>3kyd_D Small ubiquitin-related modifier 1; SUMO, thioester, adenylation, inhibitor, TETR intermediate, ligase, nucleus, phosphoprotein; HET: VMX; 2.61A {Homo sapiens} SCOP: d.15.1.1
Probab=97.98 E-value=6.4e-06 Score=51.37 Aligned_cols=42 Identities=17% Similarity=0.389 Sum_probs=38.6
Q ss_pred ccccCCCCcceEEEECCEEeCCCCCCccceec-ccceeeeeee
Q 040204 2 EDKEEILRDQQRFIFAGKRLEDGRTLVDYNIH-GSTLHSVRRF 43 (97)
Q Consensus 2 ~~~~gip~~~Q~L~~~g~~L~d~~tL~~y~I~-~sti~l~i~~ 43 (97)
+++.|+++++++++|.|++|.++.|.+++++. +++|.++...
T Consensus 71 ~er~Gl~~~~irFlFDG~rI~~~~TP~dL~MEDgD~IdV~~~Q 113 (115)
T 3kyd_D 71 CQRQGVPMNSLRFLFEGQRIADNHTPKELGMEEEDVIEVYQEQ 113 (115)
T ss_dssp HHHHTCCTTSEEEEETTEECCTTCCTTTTTCCTTCEEEEEECC
T ss_pred HHHhCCChhhEEEEECCeECCCCCCHHHcCCCCCCEEEEEeec
Confidence 45689999999999999999999999999999 9999998754
No 190
>3tix_A Ubiquitin-like protein SMT3, RNA-induced transcri silencing complex protein TAS3; PIN, rossmann fold, SPOC, alpha-helical hairpin, heterochrom silencing, RITS, RNAI, argonaute; 2.90A {Saccharomyces cerevisiae}
Probab=97.88 E-value=4.9e-06 Score=56.24 Aligned_cols=46 Identities=17% Similarity=0.383 Sum_probs=43.0
Q ss_pred ccccCCCCcceEEEECCEEeCCCCCCccceec-ccceeeeeeeecce
Q 040204 2 EDKEEILRDQQRFIFAGKRLEDGRTLVDYNIH-GSTLHSVRRFRGGM 47 (97)
Q Consensus 2 ~~~~gip~~~Q~L~~~g~~L~d~~tL~~y~I~-~sti~l~i~~~~g~ 47 (97)
+++.|+|+.+++++|.|++|.++.|.+++++. +++|+++....||.
T Consensus 87 cERqGL~~~sIRFLFDGqRI~~ddTPeDLdMEDGDtIDV~leQ~GG~ 133 (207)
T 3tix_A 87 AKRQGKEMDSLTFLYDGIEIQADQTPEDLDMEDNDIIEAHREQIGGL 133 (207)
T ss_dssp HHHTTCCGGGSCEEETTEECCSSCCTTTTTCCTTEEEEECCCCCTTG
T ss_pred HHHhCCCcccEEEEECCeecCCCCCHHHcCCCCCCEEEEEEeccCCC
Confidence 45789999999999999999999999999999 99999999998883
No 191
>3v7o_A Minor nucleoprotein VP30; ssgcid, seattle structural genomics center for infectious disease, SMT, transcription; 2.25A {Reston ebolavirus}
Probab=97.73 E-value=4.3e-06 Score=57.21 Aligned_cols=49 Identities=20% Similarity=0.426 Sum_probs=2.8
Q ss_pred ccccCCCCcceEEEECCEEeCCCCCCccceec-ccceeeeeeeecceeee
Q 040204 2 EDKEEILRDQQRFIFAGKRLEDGRTLVDYNIH-GSTLHSVRRFRGGMQIF 50 (97)
Q Consensus 2 ~~~~gip~~~Q~L~~~g~~L~d~~tL~~y~I~-~sti~l~i~~~~g~~i~ 50 (97)
+++.|+|++++|++|+|+++.++.|.+++++. |++|+++....||..+.
T Consensus 51 cERqGLs~~siRFLFDGqRI~dddTPadL~MEDGDtIDV~leQ~GG~~~~ 100 (227)
T 3v7o_A 51 AKRQGKEMDSLRFLYDGIRIQADQTPEDLDMEDNDIIEAHREQIGGLTLA 100 (227)
T ss_dssp ---------------------------------------------CCCHH
T ss_pred HHHhCCCccceEEEECCEecCCCCCHHHcCCCCCCEEEEEecccCCchHh
Confidence 56789999999999999999999999999999 99999999999986443
No 192
>3kyd_D Small ubiquitin-related modifier 1; SUMO, thioester, adenylation, inhibitor, TETR intermediate, ligase, nucleus, phosphoprotein; HET: VMX; 2.61A {Homo sapiens} SCOP: d.15.1.1
Probab=97.40 E-value=0.0004 Score=43.17 Aligned_cols=54 Identities=13% Similarity=0.134 Sum_probs=43.3
Q ss_pred ceec--ccceeeeeeeecc--eeeeeeccchhHHHHHhhhhhcCCCCCceEEEECeEe
Q 040204 30 YNIH--GSTLHSVRRFRGG--MQIFVESSDTIDNVKAKIQDKKGTPPDQQRQIFWFVF 83 (97)
Q Consensus 30 y~I~--~sti~l~i~~~~g--~~i~v~~~~TV~~lK~~I~~~~gip~~~q~Lif~G~~ 83 (97)
-+.+ +..|.+.+...+| +.+.|++++++..|+...+++.|+++++++++|.|+.
T Consensus 32 ~~~k~~~~~I~LKV~~qdg~ev~fkIk~tt~L~KLm~aY~er~Gl~~~~irFlFDG~r 89 (115)
T 3kyd_D 32 LGDKKEGEYIKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFEGQR 89 (115)
T ss_dssp -------CEEEEEEECTTSCEEEEEEETTSCTHHHHHHHHHHHTCCTTSEEEEETTEE
T ss_pred ccCCCCCCeEEEEEEcCCCCEEEEEEccCChHHHHHHHHHHHhCCChhhEEEEECCeE
Confidence 3444 5677777777666 4466799999999999999999999999999999998
No 193
>4efo_A Serine/threonine-protein kinase TBK1; ubiquitin like domain, transferase; 1.77A {Homo sapiens}
Probab=97.33 E-value=0.00014 Score=43.77 Aligned_cols=33 Identities=27% Similarity=0.565 Sum_probs=25.7
Q ss_pred CccccCCCCcceEEEECCEEe--CCCCCCccceec
Q 040204 1 IEDKEEILRDQQRFIFAGKRL--EDGRTLVDYNIH 33 (97)
Q Consensus 1 i~~~~gip~~~Q~L~~~g~~L--~d~~tL~~y~I~ 33 (97)
|++++|||+++|+|+|+|+.+ +.++.-..|.-.
T Consensus 43 V~eqTgIp~~~Q~LL~eg~~l~l~p~~~a~~~p~T 77 (94)
T 4efo_A 43 VYKQTKIISSNQELIYEGRRLVLEPGRLAQHFPKT 77 (94)
T ss_dssp HHHHHCCCGGGEEEEETTEEECCCTTCBGGGSCCC
T ss_pred HHHHhCCCHHHHHHHhCCCccccCCCCccccCCCC
Confidence 467899999999999999885 555556666544
No 194
>2pjh_A Protein NPL4, nuclear protein localization protein 4 homolog; UFD1, NPL4, AAA, protein binding, transport protein; NMR {Mus musculus}
Probab=97.32 E-value=0.00012 Score=42.58 Aligned_cols=46 Identities=11% Similarity=-0.002 Sum_probs=37.5
Q ss_pred eeeeeeeecc-eeeeeeccchhHHHHHhhhhhcCCCCCceEEEECeE
Q 040204 37 LHSVRRFRGG-MQIFVESSDTIDNVKAKIQDKKGTPPDQQRQIFWFV 82 (97)
Q Consensus 37 i~l~i~~~~g-~~i~v~~~~TV~~lK~~I~~~~gip~~~q~Lif~G~ 82 (97)
+.+.++.++| ..|.+++++||.+|+++|.+..+++++.|.+.++-.
T Consensus 5 m~lRvrs~~G~~Ri~v~~~~t~~~L~~~I~~~~~i~~~~~~l~~~~~ 51 (80)
T 2pjh_A 5 IIIRVQSPDGVKRITATKRETAATFLKKVAKEFGFQNNGFSVYINRN 51 (80)
T ss_dssp CCCEEECSSEEEECCCCSSCCHHHHHHHHHHHTCCCTTTCCCCCSCC
T ss_pred EEEEEECCCCCEEEEcCCcChHHHHHHHHHHHcCCCCCcceEEecCC
Confidence 4566777777 458889999999999999999999988887765543
No 195
>3goe_A DNA repair protein RAD60; SUMO-like domain, sumoylation, SUMO, genome stability, DNA damage, DNA recombination, nucleus; HET: DNA; 0.97A {Schizosaccharomyces pombe} PDB: 3rcz_A*
Probab=97.30 E-value=0.00018 Score=41.93 Aligned_cols=39 Identities=15% Similarity=0.233 Sum_probs=35.6
Q ss_pred cccCCCCc-ceEEEECCEEeCCCCCCccceec-ccceeeee
Q 040204 3 DKEEILRD-QQRFIFAGKRLEDGRTLVDYNIH-GSTLHSVR 41 (97)
Q Consensus 3 ~~~gip~~-~Q~L~~~g~~L~d~~tL~~y~I~-~sti~l~i 41 (97)
.+.|||++ ..+|.|.|.+|..+.++++|++. ++.|.+++
T Consensus 41 ~~~~I~~~~~IrllFDGdRLdp~~tp~DlemeD~D~IDvmL 81 (82)
T 3goe_A 41 TEVKISFHERIRLEFEGEWLDPNDQVQSTELEDEDQVSVVL 81 (82)
T ss_dssp HHHTCCCCTTCEEEETTEECCTTSBGGGSSCCTTCEEEEEC
T ss_pred HHcCCCcCceEEEEEcCcccCccCChhhhCCcCCceeeeee
Confidence 45799999 89999999999999999999999 99988765
No 196
>3pge_A SUMO-modified proliferating cell nuclear antigen; DNA replication, DNA binding protein; 2.80A {Saccharomyces cerevisiae}
Probab=97.14 E-value=0.00084 Score=45.39 Aligned_cols=49 Identities=8% Similarity=0.134 Sum_probs=41.4
Q ss_pred ccceeeeeeeecc--eeeeeeccchhHHHHHhhhhhcCCCCCceEEEECeEe
Q 040204 34 GSTLHSVRRFRGG--MQIFVESSDTIDNVKAKIQDKKGTPPDQQRQIFWFVF 83 (97)
Q Consensus 34 ~sti~l~i~~~~g--~~i~v~~~~TV~~lK~~I~~~~gip~~~q~Lif~G~~ 83 (97)
+..|.+.+.. .| ..+.|++++++..|+...+++.|+|++++|++|.|+.
T Consensus 27 ~~~I~LkV~~-~g~~v~fkIk~~t~l~kL~~ay~er~Gi~~~~~RF~FdG~r 77 (200)
T 3pge_A 27 ETHINLKVSD-GSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIR 77 (200)
T ss_dssp CCCEEEEEEC-SSCEEEEEECTTSCTHHHHHHHHHHHSSCGGGEEEEETTEE
T ss_pred CCeEEEEEec-CCCEEEEEEecCCHHHHHHHHHHHHhCCChhhEEEEECCEE
Confidence 4456666654 44 4567799999999999999999999999999999998
No 197
>3ix6_A TS, tsase, thymidylate synthase; niaid, ssgcid, seattle structural center for infectious DISE brucellosis, orchitis, epididymitis, mastitis; 2.20A {Brucella melitensis}
Probab=97.13 E-value=6.8e-05 Score=54.79 Aligned_cols=48 Identities=23% Similarity=0.448 Sum_probs=1.5
Q ss_pred ccccCCCCcceEEEECCEEeCCCCCCccceec-ccceeeeeeeecceee
Q 040204 2 EDKEEILRDQQRFIFAGKRLEDGRTLVDYNIH-GSTLHSVRRFRGGMQI 49 (97)
Q Consensus 2 ~~~~gip~~~Q~L~~~g~~L~d~~tL~~y~I~-~sti~l~i~~~~g~~i 49 (97)
+++.|++++++++.|.|+++.++.|.+++++. |++|+++....||+..
T Consensus 51 ~~r~G~~~~~~rFlFdG~rI~~~~TP~~L~MEDgD~Idv~~~Q~g~~~~ 99 (360)
T 3ix6_A 51 AKRQGKEMDSLRFLYDGIRIQADQTPEDLDMEDNDIIEAHREQIGGMRT 99 (360)
T ss_dssp ----------------------------------------------CHH
T ss_pred HHHhCCCcceEEEEECCeECCCCCChHHcCCCccchhhhhhccCchHHH
Confidence 56789999999999999999999999999999 9999999999998643
No 198
>3uf8_A Ubiquitin-like protein SMT3, peptidyl-prolyl CIS- isomerase; ssgcid, seattle structural genomics center for in disease; HET: FK5; 1.50A {Burkholderia pseudomallei} PDB: 4ggq_C* 3vaw_A* 3uqa_A* 4g50_A* 4fn2_A* 3uqb_A* 4giv_A* 1euv_B 3v60_A 3v61_A 3v62_A*
Probab=96.98 E-value=0.00053 Score=46.38 Aligned_cols=48 Identities=21% Similarity=0.423 Sum_probs=43.3
Q ss_pred ccccCCCCcceEEEECCEEeCCCCCCccceec-ccceeeeeeeecceee
Q 040204 2 EDKEEILRDQQRFIFAGKRLEDGRTLVDYNIH-GSTLHSVRRFRGGMQI 49 (97)
Q Consensus 2 ~~~~gip~~~Q~L~~~g~~L~d~~tL~~y~I~-~sti~l~i~~~~g~~i 49 (97)
+++.|+|+++++++|.|+++.++.|..+.++. +++|.++....+|..+
T Consensus 51 ~~~~g~~~~~~~f~fdG~~i~~~~Tpk~L~~ed~d~I~~~~eq~Gg~t~ 99 (209)
T 3uf8_A 51 AKRQGKEMDSLRFLYDGIRIQADQTPEDLDMEDNDIIEAHREQIGGSTV 99 (209)
T ss_dssp HHHHTCCGGGCEEEETTEECCTTCCTTTTTCCTTEEEEEECSCTTCCCC
T ss_pred HHhhCCChheEEEEECCEeccCCCChHHhhhcccccchhhccccccccc
Confidence 46789999999999999999999999999999 9999999988877543
No 199
>4da1_A Protein phosphatase 1K, mitochondrial; metal-ION-assisted catalysis, dehydrogenase phosphatase, hydrolase; 2.38A {Homo sapiens} PDB: 3qht_A 1l2n_A
Probab=96.88 E-value=0.00016 Score=52.80 Aligned_cols=50 Identities=18% Similarity=0.427 Sum_probs=0.0
Q ss_pred ccccCCCCcceEEEECCEEeCCCCCCccceec-ccceeeeeeeecceeeee
Q 040204 2 EDKEEILRDQQRFIFAGKRLEDGRTLVDYNIH-GSTLHSVRRFRGGMQIFV 51 (97)
Q Consensus 2 ~~~~gip~~~Q~L~~~g~~L~d~~tL~~y~I~-~sti~l~i~~~~g~~i~v 51 (97)
+++.|+++.+++++|+|+++.++.|.+++++. +++|.++....+|....+
T Consensus 60 ~~~~g~~~~~~~f~f~G~~i~~~~Tp~~l~med~d~i~~~~~q~gg~n~~~ 110 (389)
T 4da1_A 60 AKRQGKEMDSLRFLYDGIRIQADQAPEDLDMEDNDIIEAHREQIGGENLYF 110 (389)
T ss_dssp ---------------------------------------------------
T ss_pred HHHhCCCcceEEEEECCEEcCCCCCHHHcCCCCCCEeeeeeccccccccce
Confidence 46789999999999999999999999999999 999999999999876555
No 200
>3tix_A Ubiquitin-like protein SMT3, RNA-induced transcri silencing complex protein TAS3; PIN, rossmann fold, SPOC, alpha-helical hairpin, heterochrom silencing, RITS, RNAI, argonaute; 2.90A {Saccharomyces cerevisiae}
Probab=96.68 E-value=0.0026 Score=42.97 Aligned_cols=49 Identities=6% Similarity=0.096 Sum_probs=41.7
Q ss_pred ccceeeeeeeecc--eeeeeeccchhHHHHHhhhhhcCCCCCceEEEECeEe
Q 040204 34 GSTLHSVRRFRGG--MQIFVESSDTIDNVKAKIQDKKGTPPDQQRQIFWFVF 83 (97)
Q Consensus 34 ~sti~l~i~~~~g--~~i~v~~~~TV~~lK~~I~~~~gip~~~q~Lif~G~~ 83 (97)
+..|.+.+.. .| +.+.|++++++..|+...+++.|+++++++++|.|+.
T Consensus 55 ~e~InLKVk~-dG~eV~FKIKrtTpL~KLmeAYcERqGL~~~sIRFLFDGqR 105 (207)
T 3tix_A 55 ETHINLKVSD-GSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLTFLYDGIE 105 (207)
T ss_dssp CCEEEEEEEC-SSCEEEEEEETTSCTHHHHHHHHHHTTCCGGGSCEEETTEE
T ss_pred CCcEEEEEec-CCCEEEEEEccCChHHHHHHHHHHHhCCCcccEEEEECCee
Confidence 4556666654 44 5567799999999999999999999999999999998
No 201
>3uf8_A Ubiquitin-like protein SMT3, peptidyl-prolyl CIS- isomerase; ssgcid, seattle structural genomics center for in disease; HET: FK5; 1.50A {Burkholderia pseudomallei} PDB: 4ggq_C* 3vaw_A* 3uqa_A* 4g50_A* 4fn2_A* 3uqb_A* 4giv_A* 1euv_B 3v60_A 3v61_A 3v62_A*
Probab=96.61 E-value=0.0038 Score=42.10 Aligned_cols=50 Identities=6% Similarity=0.084 Sum_probs=42.5
Q ss_pred ccceeeeeeeecc-eeeeeeccchhHHHHHhhhhhcCCCCCceEEEECeEe
Q 040204 34 GSTLHSVRRFRGG-MQIFVESSDTIDNVKAKIQDKKGTPPDQQRQIFWFVF 83 (97)
Q Consensus 34 ~sti~l~i~~~~g-~~i~v~~~~TV~~lK~~I~~~~gip~~~q~Lif~G~~ 83 (97)
+..|.+.+...++ ..+.++.+++...|+...+++.|+++++++++|.|+.
T Consensus 19 ~~~i~ikv~~~~~~v~~~i~~~~~l~kl~~~y~~~~g~~~~~~~f~fdG~~ 69 (209)
T 3uf8_A 19 ETHINLKVSDGSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIR 69 (209)
T ss_dssp CSEEEEEEECSSCEEEEEEETTSCTHHHHHHHHHHHTCCGGGCEEEETTEE
T ss_pred CCcEEEEEEcCCCEEEEEEeeCCHHHHHHHHHHHhhCCChheEEEEECCEe
Confidence 6677777765333 4567799999999999999999999999999999998
No 202
>2jxx_A Nfatc2-interacting protein; nuclear factor of activated T-cells, cytoplasmic 2- interacting protein, ubiquitin like homologue; NMR {Homo sapiens}
Probab=96.46 E-value=0.0015 Score=39.39 Aligned_cols=38 Identities=16% Similarity=0.320 Sum_probs=34.8
Q ss_pred cccCCCCcceEEEECCEEeCCCCCCccceec-ccceeee
Q 040204 3 DKEEILRDQQRFIFAGKRLEDGRTLVDYNIH-GSTLHSV 40 (97)
Q Consensus 3 ~~~gip~~~Q~L~~~g~~L~d~~tL~~y~I~-~sti~l~ 40 (97)
++.|++++.-+++|.|.+|..+.|.+++++. +++|.++
T Consensus 58 ~~~g~~~~~vrF~FDG~rI~~~~TP~dLdMEDgD~IDv~ 96 (97)
T 2jxx_A 58 EAMGLSGRKLSFFFDGTKLSGRELPADLGMESGDLIEVW 96 (97)
T ss_dssp HHTTCSSSCCEEEETTEECCSCSCHHHHTCCTTEEEEEE
T ss_pred HHHCCCcccEEEEECCEEcCCCCCHHHcCCCCCCEEEEe
Confidence 4678999999999999999999999999999 9998764
No 203
>2l76_A Nfatc2-interacting protein; ubiquitin-like domain, structural genomics, PSI-biology, Pro structure initiative; NMR {Homo sapiens}
Probab=96.25 E-value=0.0025 Score=38.25 Aligned_cols=42 Identities=10% Similarity=0.081 Sum_probs=38.1
Q ss_pred ccccCCCCcceEEEECCEEeCCCCCCccceec-ccceeeeeee
Q 040204 2 EDKEEILRDQQRFIFAGKRLEDGRTLVDYNIH-GSTLHSVRRF 43 (97)
Q Consensus 2 ~~~~gip~~~Q~L~~~g~~L~d~~tL~~y~I~-~sti~l~i~~ 43 (97)
+++.|++++.-++.|.|.++.++.|-++.++. +++|.++...
T Consensus 51 c~r~gv~~~sirFlfDG~rI~~~~TP~~L~meD~DiID~~~~~ 93 (95)
T 2l76_A 51 ATHLGVSPSRILLLFGETELSPTATPRTLKLGVADIIDCVVLT 93 (95)
T ss_dssp HHHHTSCGGGEEEEETTEECCTTSCHHHHTCCSSCEEEEEECC
T ss_pred HhhcCCChhhEEEEECCcCCCCCCCHhHcCCCCCCEEEEEEec
Confidence 45789999999999999999999999999999 9999987743
No 204
>3goe_A DNA repair protein RAD60; SUMO-like domain, sumoylation, SUMO, genome stability, DNA damage, DNA recombination, nucleus; HET: DNA; 0.97A {Schizosaccharomyces pombe} PDB: 3rcz_A*
Probab=95.86 E-value=0.02 Score=33.25 Aligned_cols=40 Identities=8% Similarity=0.021 Sum_probs=36.3
Q ss_pred ecceeeeeeccchhHHHHHhhhhhcCCCCC-ceEEEECeEe
Q 040204 44 RGGMQIFVESSDTIDNVKAKIQDKKGTPPD-QQRQIFWFVF 83 (97)
Q Consensus 44 ~~g~~i~v~~~~TV~~lK~~I~~~~gip~~-~q~Lif~G~~ 83 (97)
++.+.+.|+++.+|..+-..-..+.|||++ .-+|.|.|..
T Consensus 19 ~~dl~f~I~~~t~v~kLi~ayc~~~~I~~~~~IrllFDGdR 59 (82)
T 3goe_A 19 SEDLRLSIPVDFTVKDLIKRYCTEVKISFHERIRLEFEGEW 59 (82)
T ss_dssp SCCEEEEEETTSBHHHHHHHHHHHHTCCCCTTCEEEETTEE
T ss_pred CCCeEEEecCCCCHHHHHHHHHHHcCCCcCceEEEEEcCcc
Confidence 344778889999999999999999999999 9999999987
No 205
>3v7o_A Minor nucleoprotein VP30; ssgcid, seattle structural genomics center for infectious disease, SMT, transcription; 2.25A {Reston ebolavirus}
Probab=95.34 E-value=0.0028 Score=43.36 Aligned_cols=49 Identities=8% Similarity=0.163 Sum_probs=0.0
Q ss_pred ccceeeeeeeecc--eeeeeeccchhHHHHHhhhhhcCCCCCceEEEECeEe
Q 040204 34 GSTLHSVRRFRGG--MQIFVESSDTIDNVKAKIQDKKGTPPDQQRQIFWFVF 83 (97)
Q Consensus 34 ~sti~l~i~~~~g--~~i~v~~~~TV~~lK~~I~~~~gip~~~q~Lif~G~~ 83 (97)
+..|.+.+. .+| ..+.|+++++...|+...+++.|++++++|++|.|+.
T Consensus 19 ~e~InLKV~-qdGseV~FKIKrtTpL~KLM~AYcERqGLs~~siRFLFDGqR 69 (227)
T 3v7o_A 19 ETHINLKVS-DGSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIR 69 (227)
T ss_dssp ----------------------------------------------------
T ss_pred CCeEEEEEe-CCCCEEEEEEccCChHHHHHHHHHHHhCCCccceEEEECCEe
Confidence 455666663 344 4566799999999999999999999999999999998
No 206
>2pjh_A Protein NPL4, nuclear protein localization protein 4 homolog; UFD1, NPL4, AAA, protein binding, transport protein; NMR {Mus musculus}
Probab=94.46 E-value=0.0052 Score=35.47 Aligned_cols=39 Identities=10% Similarity=0.112 Sum_probs=31.0
Q ss_pred ccccCCCCcceEEEECCEE-----eCCCCCCccceec-ccceeee
Q 040204 2 EDKEEILRDQQRFIFAGKR-----LEDGRTLVDYNIH-GSTLHSV 40 (97)
Q Consensus 2 ~~~~gip~~~Q~L~~~g~~-----L~d~~tL~~y~I~-~sti~l~ 40 (97)
+++.+++++.|.++++..+ +.++.+|+++||. |+.+++.
T Consensus 34 ~~~~~i~~~~~~l~~~~~p~~~l~~~~~~~l~~lgl~hGd~l~l~ 78 (80)
T 2pjh_A 34 AKEFGFQNNGFSVYINRNKTGEITASSSKSLHLLKIKHGDLLFLF 78 (80)
T ss_dssp HHHTCCCTTTCCCCCSCCGGGGSSSCCCCTTTTTCCCTTCCEEC-
T ss_pred HHHcCCCCCcceEEecCCCCCcccCCCCCCHHHcCCCCCCEEEEe
Confidence 4567899888888876655 4588899999999 9999874
No 207
>2jxx_A Nfatc2-interacting protein; nuclear factor of activated T-cells, cytoplasmic 2- interacting protein, ubiquitin like homologue; NMR {Homo sapiens}
Probab=94.30 E-value=0.18 Score=30.06 Aligned_cols=50 Identities=6% Similarity=0.052 Sum_probs=42.8
Q ss_pred ccceeeeeeeecc---eeeeeeccchhHHHHHhhhhhcCCCCCceEEEECeEe
Q 040204 34 GSTLHSVRRFRGG---MQIFVESSDTIDNVKAKIQDKKGTPPDQQRQIFWFVF 83 (97)
Q Consensus 34 ~sti~l~i~~~~g---~~i~v~~~~TV~~lK~~I~~~~gip~~~q~Lif~G~~ 83 (97)
+..|.+.+...+| ..+.|+++++...|...-.++.|++++..+++|.|..
T Consensus 23 ~~~I~LkV~~~dg~~~v~fkIk~~t~l~kLm~aY~~~~g~~~~~vrF~FDG~r 75 (97)
T 2jxx_A 23 SQQLQLRVQGKEKHQTLEVSLSRDSPLKTLMSHYEEAMGLSGRKLSFFFDGTK 75 (97)
T ss_dssp CSEEEEEEEESSSSCEEEEEEETTSCHHHHHHHHHHHTTCSSSCCEEEETTEE
T ss_pred CCeEEEEEEcCCCCEEEEEEECCCChHHHHHHHHHHHHCCCcccEEEEECCEE
Confidence 5567777776655 3567799999999999999999999999999999998
No 208
>2al3_A TUG long isoform; TUG UBL1 insulin, endocytosis/exocytosis complex; NMR {Mus musculus} SCOP: d.15.1.2
Probab=93.91 E-value=0.14 Score=30.25 Aligned_cols=47 Identities=13% Similarity=0.028 Sum_probs=40.7
Q ss_pred eeeeeeeecc--eeeeeeccchhHHHHHhhhhhcCCCCCceEEEECeEe
Q 040204 37 LHSVRRFRGG--MQIFVESSDTIDNVKAKIQDKKGTPPDQQRQIFWFVF 83 (97)
Q Consensus 37 i~l~i~~~~g--~~i~v~~~~TV~~lK~~I~~~~gip~~~q~Lif~G~~ 83 (97)
+++.+-..++ ..|.|.|+.++.++-+.-.++.|+.+++..|.|+++.
T Consensus 10 m~v~Vl~~n~rr~~VKvtp~t~L~~VL~eaC~K~gl~~~~~~Lkh~~k~ 58 (90)
T 2al3_A 10 SAVSVLAPNGRRHTVKVTPSTVLLQVLEDTCRRQDFNPSEYDLKFQRTV 58 (90)
T ss_dssp CCEEEECTTSCEEEECCCTTSBHHHHHHHHHHHTTCCGGGCEEEETTEE
T ss_pred cEEEEEcCCCcEEEEEECCCCCHHHHHHHHHHHhCCChhhCeEEeCCEe
Confidence 4566656555 5688899999999999999999999999999999999
No 209
>3ivf_A Talin-1; FERM domain, cell membrane, cell projection, cytoskeleton, M phosphoprotein, cell adhesion, structural protein; 1.94A {Mus musculus} PDB: 2kma_A 2kc1_A
Probab=92.23 E-value=0.26 Score=35.31 Aligned_cols=73 Identities=23% Similarity=0.327 Sum_probs=54.0
Q ss_pred CCcceEEEE------CCEEeCCCCCCccceec-ccceeee-------eeeecc--eeeeeeccchhHHHHHhhhhhcCCC
Q 040204 8 LRDQQRFIF------AGKRLEDGRTLVDYNIH-GSTLHSV-------RRFRGG--MQIFVESSDTIDNVKAKIQDKKGTP 71 (97)
Q Consensus 8 p~~~Q~L~~------~g~~L~d~~tL~~y~I~-~sti~l~-------i~~~~g--~~i~v~~~~TV~~lK~~I~~~~gip 71 (97)
+.++=-|+. .|.=|++++||..|++. ++.+... +...+| ..+.++++.|+.++-+.|.++.|+.
T Consensus 43 ~~~~y~l~~~~~~~~~~~Wl~~~~~l~~y~~~~~~~l~~~~~~~~~~V~l~dg~~~~~~vd~~tt~~el~~~v~~~l~L~ 122 (371)
T 3ivf_A 43 PPNDFGLFLSDDDPKKGIWLEAGKALDYYMLRNGDTMEYRKKQRPLKIRMLDGTVKTIMVDDSKTVTDMLMTICARIGIT 122 (371)
T ss_dssp CGGGEEEEECCSSGGGCEECCTTSBGGGGTCCTTCEEEEEECEEEEEEECTTSCEEEEEEETTSBHHHHHHHHHHHTTCS
T ss_pred CHHHCeEeccCCCCCcCEeccCCCCHHHhCCCCCceeeccCceeEEEEECcCCCEEEEEECCCCCHHHHHHHHHHHcCCC
Confidence 445556666 23448889999999999 8876664 445566 3467799999999999999999875
Q ss_pred -CCceEEEEC
Q 040204 72 -PDQQRQIFW 80 (97)
Q Consensus 72 -~~~q~Lif~ 80 (97)
.+-.-|.+.
T Consensus 123 e~~~FgL~~~ 132 (371)
T 3ivf_A 123 NHDEYSLVRE 132 (371)
T ss_dssp CGGGEEEECC
T ss_pred CccccEEEEE
Confidence 555666664
No 210
>2kvr_A Ubiquitin carboxyl-terminal hydrolase 7; USP7, ubiquitin-like domain, UBL, ubiquitin specific protease, HOST-virus interaction, nucleus, protease; NMR {Homo sapiens}
Probab=92.15 E-value=0.12 Score=32.45 Aligned_cols=32 Identities=19% Similarity=0.199 Sum_probs=28.6
Q ss_pred eeeeeccchhHHHHHhhhhhcCCCCCceEEEE
Q 040204 48 QIFVESSDTIDNVKAKIQDKKGTPPDQQRQIF 79 (97)
Q Consensus 48 ~i~v~~~~TV~~lK~~I~~~~gip~~~q~Lif 79 (97)
.+.|..++|+.++|..|.+..|+|+++|||-.
T Consensus 59 ~~rv~k~~~~~~~~~~va~~lg~~~~~~RlW~ 90 (130)
T 2kvr_A 59 VFKVLKNSSLAEFVQSLSQTMGFPQDQIRLWP 90 (130)
T ss_dssp EEECCTTSBHHHHHHHHHHHHCCCGGGCEEEE
T ss_pred eEEEeccCcHHHHHHHHHHHhCCCcccEEEEE
Confidence 45678899999999999999999999999864
No 211
>2l76_A Nfatc2-interacting protein; ubiquitin-like domain, structural genomics, PSI-biology, Pro structure initiative; NMR {Homo sapiens}
Probab=91.83 E-value=0.88 Score=27.07 Aligned_cols=50 Identities=14% Similarity=0.169 Sum_probs=41.5
Q ss_pred ccceeeeeeeecc-eeeeeeccchhHHHHHhhhhhcCCCCCceEEEECeEe
Q 040204 34 GSTLHSVRRFRGG-MQIFVESSDTIDNVKAKIQDKKGTPPDQQRQIFWFVF 83 (97)
Q Consensus 34 ~sti~l~i~~~~g-~~i~v~~~~TV~~lK~~I~~~~gip~~~q~Lif~G~~ 83 (97)
+..|.+.++..++ ..+.++.++....|...-.++.|++++..++.|.|..
T Consensus 19 ~~~IniKV~~~g~ev~FkIK~tt~l~KL~~aYc~r~gv~~~sirFlfDG~r 69 (95)
T 2l76_A 19 PRLFPLKIRCRADLVRLPLRMSEPLQSVVDHMATHLGVSPSRILLLFGETE 69 (95)
T ss_dssp CCCEEEEEECSSSEEEEEECSSSCTHHHHHHHHHHHTSCGGGEEEEETTEE
T ss_pred CCeEEEEEEcCCcEEEEEEecCChHHHHHHHHHhhcCCChhhEEEEECCcC
Confidence 4557777775433 4566789999999999999999999999999999987
No 212
>3ix6_A TS, tsase, thymidylate synthase; niaid, ssgcid, seattle structural center for infectious DISE brucellosis, orchitis, epididymitis, mastitis; 2.20A {Brucella melitensis}
Probab=91.79 E-value=0.031 Score=40.80 Aligned_cols=50 Identities=6% Similarity=0.084 Sum_probs=0.0
Q ss_pred ccceeeeeeeecc-eeeeeeccchhHHHHHhhhhhcCCCCCceEEEECeEe
Q 040204 34 GSTLHSVRRFRGG-MQIFVESSDTIDNVKAKIQDKKGTPPDQQRQIFWFVF 83 (97)
Q Consensus 34 ~sti~l~i~~~~g-~~i~v~~~~TV~~lK~~I~~~~gip~~~q~Lif~G~~ 83 (97)
+..|.+.++..+. ..+.|+++++...|+...+++.|+++++++++|.|+.
T Consensus 19 ~~~I~LKV~~~g~~v~FkIk~~t~l~kLm~aY~~r~G~~~~~~rFlFdG~r 69 (360)
T 3ix6_A 19 ETHINLKVSDGSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIR 69 (360)
T ss_dssp ---------------------------------------------------
T ss_pred CCeEEEEEecCCcEEEEEEecCChHHHHHHHHHHHhCCCcceEEEEECCeE
Confidence 4455555554322 4567799999999999999999999999999999998
No 213
>4da1_A Protein phosphatase 1K, mitochondrial; metal-ION-assisted catalysis, dehydrogenase phosphatase, hydrolase; 2.38A {Homo sapiens} PDB: 3qht_A 1l2n_A
Probab=90.26 E-value=0.053 Score=39.33 Aligned_cols=50 Identities=6% Similarity=0.084 Sum_probs=0.0
Q ss_pred ccceeeeeeeecc-eeeeeeccchhHHHHHhhhhhcCCCCCceEEEECeEe
Q 040204 34 GSTLHSVRRFRGG-MQIFVESSDTIDNVKAKIQDKKGTPPDQQRQIFWFVF 83 (97)
Q Consensus 34 ~sti~l~i~~~~g-~~i~v~~~~TV~~lK~~I~~~~gip~~~q~Lif~G~~ 83 (97)
+..|.+.+...+. ..+.|+++++...|+....++.|++++++++.|.|+.
T Consensus 28 ~~~i~lkv~~~~~~~~~~i~~~~~~~~l~~~y~~~~g~~~~~~~f~f~G~~ 78 (389)
T 4da1_A 28 ETHINLKVSDGSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIR 78 (389)
T ss_dssp ---------------------------------------------------
T ss_pred CCcEEEEEecCCcEEEEEECCCChHHHHHHHHHHHhCCCcceEEEEECCEE
Confidence 3445555544222 4467799999999999999999999999999999998
No 214
>4eut_A Serine/threonine-protein kinase TBK1; ATP binding, phosphorylation, transferase-transferas inhibitor complex; HET: BX7; 2.60A {Homo sapiens}
Probab=89.38 E-value=0.35 Score=34.38 Aligned_cols=33 Identities=15% Similarity=0.149 Sum_probs=30.4
Q ss_pred eeeeccchhHHHHHhhhhhcCCCCCceEEEECe
Q 040204 49 IFVESSDTIDNVKAKIQDKKGTPPDQQRQIFWF 81 (97)
Q Consensus 49 i~v~~~~TV~~lK~~I~~~~gip~~~q~Lif~G 81 (97)
+.+.+..|+.++++++++.++++++.|.|+|.+
T Consensus 326 ~~~~~~~~~~~~~~~~~~~t~i~~~~q~~l~~~ 358 (396)
T 4eut_A 326 IYIHSYNTATIFHELVYKQTKIISSNQELIYEG 358 (396)
T ss_dssp EEECTTCBHHHHHHHHHHHHCCCSTTEEEESSS
T ss_pred EEcCchhHHHHHHHHHHHhcCCChhhhHHHhcC
Confidence 445788999999999999999999999999998
No 215
>2juo_A GA-binding protein alpha chain; OST, ubiquitin, transcription factor, ensemble, DNA-binding, nucleus, transcription regulation; NMR {Mus musculus}
Probab=88.29 E-value=1 Score=26.31 Aligned_cols=42 Identities=17% Similarity=0.259 Sum_probs=34.4
Q ss_pred ccccCCCCcceEEEECCEEeCCCCCCccceec-ccceeeeeee
Q 040204 2 EDKEEILRDQQRFIFAGKRLEDGRTLVDYNIH-GSTLHSVRRF 43 (97)
Q Consensus 2 ~~~~gip~~~Q~L~~~g~~L~d~~tL~~y~I~-~sti~l~i~~ 43 (97)
+.+.|++-+.-.++..+..|+++++|.+-+++ ...+.+.+..
T Consensus 23 e~Rl~i~L~~y~f~LQd~~L~~~k~LvdQcVqgeGlVQinvqi 65 (89)
T 2juo_A 23 EPRLQCSLDAHEICLQDIQLDPDRSLFDQGVKTDGTVQLSVQV 65 (89)
T ss_dssp HHHHCSCCSSCEEEETTEECCTTSBTTTSSCCCCSEEEEEEEE
T ss_pred HHHhcCCcccCeEEeeccccCCCccHHHhhcccccEEEEEEEE
Confidence 44567888888888899999999999999999 7777666644
No 216
>2al3_A TUG long isoform; TUG UBL1 insulin, endocytosis/exocytosis complex; NMR {Mus musculus} SCOP: d.15.1.2
Probab=88.15 E-value=0.31 Score=28.80 Aligned_cols=42 Identities=14% Similarity=0.097 Sum_probs=37.3
Q ss_pred cccCCCCcceEEEECCEEeCCCCCCccceec-ccceeeeeeee
Q 040204 3 DKEEILRDQQRFIFAGKRLEDGRTLVDYNIH-GSTLHSVRRFR 44 (97)
Q Consensus 3 ~~~gip~~~Q~L~~~g~~L~d~~tL~~y~I~-~sti~l~i~~~ 44 (97)
++.|+.+++-.|.|++++|+-..++.-.|+. |+++.++....
T Consensus 41 ~K~gl~~~~~~Lkh~~k~lDLSlpfRlsgLpnnAkLELv~~s~ 83 (90)
T 2al3_A 41 RRQDFNPSEYDLKFQRTVLDLSLQWRFANLPNNAKLEMVPVSR 83 (90)
T ss_dssp HHTTCCGGGCEEEETTEEESSSCBHHHHCCCSSCEEEEECSSS
T ss_pred HHhCCChhhCeEEeCCEeccccceeEecCCCCCCEEEEEEccC
Confidence 5688998999999999999999999999999 99999887543
No 217
>2kc2_A Talin-1, F1; FERM, adhesion, cell membrane, cell projection, cytoplasm, cytoskeleton, membrane, phosphoprotein, structural protein; NMR {Mus musculus}
Probab=87.94 E-value=0.66 Score=29.03 Aligned_cols=41 Identities=20% Similarity=0.249 Sum_probs=31.9
Q ss_pred eeeeeecc--eeeeeeccchhHHHHHhhhhhcCCCCC-ceEEEE
Q 040204 39 SVRRFRGG--MQIFVESSDTIDNVKAKIQDKKGTPPD-QQRQIF 79 (97)
Q Consensus 39 l~i~~~~g--~~i~v~~~~TV~~lK~~I~~~~gip~~-~q~Lif 79 (97)
+.+++.+| ..+.|+.+.||.+++..|+.+.||+.. ...|+.
T Consensus 14 LkV~llDg~~ktl~VD~S~~V~~lv~~Ic~kigI~n~~ey~L~~ 57 (128)
T 2kc2_A 14 LKIRMLDGTVKTIMVDDSKTVTDMLMTICARIGITNHDEYSLVR 57 (128)
T ss_dssp EEEECTTSCEEEEEEEECSSHHHHHHHHHHHHTCCCCSSEEEEE
T ss_pred EEEEcCCCCEEEEEeCCCcCHHHHHHHHHHHhCCCCcccccccc
Confidence 56677777 467789999999999999999998743 344443
No 218
>1oey_A P67-PHOX, neutrophil cytosol factor 2; immune system, PB1 heterodimer/complex, NADPH oxidase, PB1 D heterodimerization; 2.0A {Homo sapiens} SCOP: d.15.2.2
Probab=85.52 E-value=1.6 Score=25.22 Aligned_cols=38 Identities=5% Similarity=-0.018 Sum_probs=33.5
Q ss_pred ceeeeeeccchhHHHHHhhhhhcCCCCCceEEEECeEe
Q 040204 46 GMQIFVESSDTIDNVKAKIQDKKGTPPDQQRQIFWFVF 83 (97)
Q Consensus 46 g~~i~v~~~~TV~~lK~~I~~~~gip~~~q~Lif~G~~ 83 (97)
.+-|.|.+.-+..+|.++|.++-++|++.-.|.|....
T Consensus 15 tvairvp~~~~y~~L~~~l~~kL~l~~~~~~LsYk~~~ 52 (83)
T 1oey_A 15 TVVMKTQPGLPYSQVRDMVSKKLELRLEHTKLSYRPRD 52 (83)
T ss_dssp EEEEEECTTCCHHHHHHHHHHHTTCCGGGCCEEECCTT
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCcceeEEEeeCCC
Confidence 34566788999999999999999999999999999875
No 219
>2bps_A YUKD protein; ubiquitin-like protein, ubiquitin; 2.7A {Bacillus subtilis}
Probab=85.51 E-value=0.23 Score=28.72 Aligned_cols=29 Identities=24% Similarity=0.247 Sum_probs=25.0
Q ss_pred ceEEEECCEEeCCCCCCccceec-ccceee
Q 040204 11 QQRFIFAGKRLEDGRTLVDYNIH-GSTLHS 39 (97)
Q Consensus 11 ~Q~L~~~g~~L~d~~tL~~y~I~-~sti~l 39 (97)
+.+....+..|.+++.|++|+|. |+.+.+
T Consensus 51 ~irv~NK~~~L~~~~~L~d~~ItnGD~Lei 80 (81)
T 2bps_A 51 WIRVVNKDKVFSGECKLSDCGITNGDRLEI 80 (81)
T ss_dssp EEEEGGGTEEEETTSBTGGGTCCTTCEEEE
T ss_pred EEEEecCCEEEcCCCEEeeCCcCCCCEEEE
Confidence 56677788899999999999999 998864
No 220
>2ylm_A Ubiquitin carboxyl-terminal hydrolase 7; UBL; 2.70A {Homo sapiens}
Probab=83.59 E-value=0.91 Score=34.45 Aligned_cols=32 Identities=19% Similarity=0.199 Sum_probs=28.8
Q ss_pred eeeeeccchhHHHHHhhhhhcCCCCCceEEEE
Q 040204 48 QIFVESSDTIDNVKAKIQDKKGTPPDQQRQIF 79 (97)
Q Consensus 48 ~i~v~~~~TV~~lK~~I~~~~gip~~~q~Lif 79 (97)
.+.|..++|+.++|++|.+..|+|+++|||=.
T Consensus 39 ~~rv~k~~~~~~l~~~va~~lg~~~~~~RlW~ 70 (530)
T 2ylm_A 39 VFKVLKNSSLAEFVQSLSQTMGFPQDQIRLWP 70 (530)
T ss_dssp EEEEETTSBHHHHHHHHHHHHTSCGGGEEEEE
T ss_pred eEEEcCcCCHHHHHHHHHHHhCcCcccEEEEE
Confidence 46778999999999999999999999999843
No 221
>3qx1_A FAS-associated factor 1; UBX, protein binding, P97 binding; 1.60A {Homo sapiens} PDB: 3qwz_B* 3qc8_B 3qca_A 3qq8_B 3r3m_B 1h8c_A
Probab=82.75 E-value=3.8 Score=23.03 Aligned_cols=45 Identities=18% Similarity=0.113 Sum_probs=35.0
Q ss_pred ccceeeeeeeecceee--eeeccchhHHHHHhhhhhcCCCCCceEEEE
Q 040204 34 GSTLHSVRRFRGGMQI--FVESSDTIDNVKAKIQDKKGTPPDQQRQIF 79 (97)
Q Consensus 34 ~sti~l~i~~~~g~~i--~v~~~~TV~~lK~~I~~~~gip~~~q~Lif 79 (97)
..+..+.+|+++|..+ ....++||.+|.+-|.. .+.++....|+-
T Consensus 5 ~~~~~i~iRlpdG~r~~~~F~~~~tl~~v~~fv~~-~~~~~~~f~L~t 51 (84)
T 3qx1_A 5 EPVSKLRIRTPSGEFLERRFLASNKLQIVFDFVAS-KGFPWDEYKLLS 51 (84)
T ss_dssp CCEEEEEEECTTSCEEEEEEETTSBHHHHHHHHHH-TTCCTTTEEEEC
T ss_pred CCeEEEEEECCCCCEEEEEeCCCCCHHHHHHHHHH-cCCCCCCeEEEe
Confidence 4566788888888543 34889999999999987 667778888873
No 222
>3qa8_A MGC80376 protein; kinase ubiquitin-like domain, phosphorylation, kinase domain ubiquitin-like domain, kinase, substrate binding; 3.60A {Xenopus laevis} PDB: 3qad_A* 3rzf_A*
Probab=82.60 E-value=0.92 Score=35.47 Aligned_cols=36 Identities=19% Similarity=0.295 Sum_probs=32.2
Q ss_pred eeeeeccchhHHHHHhhhhhcCCCCCceEEEECeEe
Q 040204 48 QIFVESSDTIDNVKAKIQDKKGTPPDQQRQIFWFVF 83 (97)
Q Consensus 48 ~i~v~~~~TV~~lK~~I~~~~gip~~~q~Lif~G~~ 83 (97)
.+.+.+++|+.+++..|++.+|||++.|.+++.+..
T Consensus 325 ~~~i~~~~tl~~l~~~i~~~T~i~~~~q~~~~~~~~ 360 (676)
T 3qa8_A 325 TYPVTENENLQNLKSWLQQDTGIPEEEQELLQASGL 360 (676)
T ss_dssp EEECCTTCCHHHHHHHHHTTSCCCSTTCEEESSSSC
T ss_pred eeecCCCccHHHHHHHHHHHhCCCHHHHHHHhccCC
Confidence 355688999999999999999999999999998755
No 223
>2dzk_A UBX domain-containing protein 2; ubiquitin-like fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} PDB: 2kxj_A
Probab=74.20 E-value=8.1 Score=22.95 Aligned_cols=45 Identities=9% Similarity=0.055 Sum_probs=34.5
Q ss_pred cceeeeeeeecceee--eeeccchhHHHHHhhhhhcCCCCCceEEEE
Q 040204 35 STLHSVRRFRGGMQI--FVESSDTIDNVKAKIQDKKGTPPDQQRQIF 79 (97)
Q Consensus 35 sti~l~i~~~~g~~i--~v~~~~TV~~lK~~I~~~~gip~~~q~Lif 79 (97)
.+..+.+|+++|..+ ....++||.+|.+-|....+.+.....|+-
T Consensus 12 ~~t~IqIRlpdG~rl~~rF~~~~tl~~v~~fV~~~~~~~~~~f~L~t 58 (109)
T 2dzk_A 12 TIARIQFRLPDGSSFTNQFPSDAPLEEARQFAAQTVGNTYGNFSLAT 58 (109)
T ss_dssp CCEEEEEECSSSCEEEEEECTTSBHHHHHHHHHHHHTTSSCSCEEEC
T ss_pred CcEEEEEECCCCCEEEEEeCCCCCHHHHHHHHHhccCCCCCceEEEc
Confidence 467788888888543 448899999999999988777666666663
No 224
>2r2o_A Plexin-B1; effector domain, structural genomics, structural GEN consortium, SGC, glycoprotein, membrane, phosphorylation, R secreted, transmembrane; 2.00A {Homo sapiens} PDB: 2rex_A* 2jph_A
Probab=71.52 E-value=5.7 Score=25.11 Aligned_cols=33 Identities=30% Similarity=0.459 Sum_probs=25.7
Q ss_pred eeeeeeccchhHHHHHhhhhhc--CCC------CCceEEEE
Q 040204 47 MQIFVESSDTIDNVKAKIQDKK--GTP------PDQQRQIF 79 (97)
Q Consensus 47 ~~i~v~~~~TV~~lK~~I~~~~--gip------~~~q~Lif 79 (97)
+.+.|-..|||..+|+||-+.- |+| +++.-|-+
T Consensus 43 i~VkVLdCDTItQvKeKiLDavYk~~PySqRP~~~d~dLEw 83 (138)
T 2r2o_A 43 VPVKVLDCDTISQAKEKMLDQLYKGVPLTQRPDPRTLDVEW 83 (138)
T ss_dssp EEEEEETTCBHHHHHHHHHHHHTTTSCGGGCCCGGGEEEEE
T ss_pred eeEEEeccccHHHHHHHHHHHHHcCCccccCCCccceeEEE
Confidence 5677788999999999998873 665 45566666
No 225
>1wj4_A KIAA0794 protein; UBX domain, beta-grAsp fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: d.15.1.2
Probab=70.43 E-value=8.4 Score=23.52 Aligned_cols=44 Identities=16% Similarity=0.302 Sum_probs=34.3
Q ss_pred ccceeeeeeeecceee--eeeccchhHHHHHhhhhhcCCCCCceEEE
Q 040204 34 GSTLHSVRRFRGGMQI--FVESSDTIDNVKAKIQDKKGTPPDQQRQI 78 (97)
Q Consensus 34 ~sti~l~i~~~~g~~i--~v~~~~TV~~lK~~I~~~~gip~~~q~Li 78 (97)
..+..+.+|+++|..+ ....++||.+|..-|... +.++....|+
T Consensus 41 ~~~t~IqIRlPdG~rl~~rF~~~~tl~~V~~fV~~~-~~~~~~F~L~ 86 (124)
T 1wj4_A 41 GPKAQLMLRYPDGKREQITLPEQAKLLALVKHVQSK-GYPNERFELL 86 (124)
T ss_dssp SCEEEEEEECTTSCEEEEEEETTSCHHHHHHHHHHH-HCCTTTEEEE
T ss_pred CCcEEEEEECCCCCEEEEEeCCCCCHHHHHHHHHhc-CCCCCCeEEe
Confidence 4567788899888543 448899999999999876 7777777776
No 226
>4e71_A Plexin-B2, MM1; transmembrane, signaling, RBD, structural genomics consortium, SGC, signaling protein; 2.26A {Homo sapiens}
Probab=67.93 E-value=7.8 Score=23.54 Aligned_cols=33 Identities=39% Similarity=0.600 Sum_probs=23.3
Q ss_pred eeeeeeccchhHHHHHhhhhh--cCCC------CCceEEEE
Q 040204 47 MQIFVESSDTIDNVKAKIQDK--KGTP------PDQQRQIF 79 (97)
Q Consensus 47 ~~i~v~~~~TV~~lK~~I~~~--~gip------~~~q~Lif 79 (97)
+.+.|-..|||..+|+||-+. .|.| +++..|-|
T Consensus 26 i~vkVLdCDTItQvKeKiLd~vyk~~pyS~rP~~~~~dLEw 66 (111)
T 4e71_A 26 IPVKVLNCDTISQVKEKIIDQVYRGQPCSCWPRPDSVVLEW 66 (111)
T ss_dssp EEEEEETTCBHHHHHHHHHHHHTC---------CCSEEEEE
T ss_pred eeeeeeccCcHHHHHHHHHHHHHcCCccccCCCCCceeeEE
Confidence 556667899999999999876 3665 45677777
No 227
>4e74_A Plexin-A4; RBD, structural genomics, structural genomics consor SGC, signaling protein; 1.58A {Homo sapiens} PDB: 3q3j_A*
Probab=62.70 E-value=11 Score=23.05 Aligned_cols=33 Identities=30% Similarity=0.415 Sum_probs=25.3
Q ss_pred eeeeeeccchhHHHHHhhhhh--cCCC------CCceEEEE
Q 040204 47 MQIFVESSDTIDNVKAKIQDK--KGTP------PDQQRQIF 79 (97)
Q Consensus 47 ~~i~v~~~~TV~~lK~~I~~~--~gip------~~~q~Lif 79 (97)
+.+.|-..|||..+|++|-+. .|.| +++..|-|
T Consensus 29 i~VkVLdCDTItQvKeKiLd~vyk~~p~S~rP~~~~~dLEw 69 (117)
T 4e74_A 29 VPVKILNCDTITQVKEKILDAIFKNVPCSHRPKAADMDLEW 69 (117)
T ss_dssp EEEEEETTSBHHHHHHHHHHHHTTTSCGGGSCCGGGEEEEE
T ss_pred eEeeeecCCchHHHHHHHHHHHhcCCCcccCCCCCceeEEE
Confidence 556667899999999999876 3666 45677777
No 228
>3h6n_A Plexin-D1; structural genomics consortium, SGC, membrane, transmembrane, receptor, alternative splicing, cell membrane, glycoprotein, polymorphism; 2.00A {Homo sapiens}
Probab=60.71 E-value=13 Score=23.16 Aligned_cols=33 Identities=24% Similarity=0.413 Sum_probs=25.7
Q ss_pred eeeeeeccchhHHHHHhhhhh--cCCC------CCceEEEE
Q 040204 47 MQIFVESSDTIDNVKAKIQDK--KGTP------PDQQRQIF 79 (97)
Q Consensus 47 ~~i~v~~~~TV~~lK~~I~~~--~gip------~~~q~Lif 79 (97)
+.+.|-..|||..+|++|-+. .|.| ++++.|-|
T Consensus 19 i~VkVLdCDTItQvKeKiLd~vyk~~p~S~rP~~~~~dLEw 59 (127)
T 3h6n_A 19 LSVRAMDTDTLTQVKEKILEAFCKNVPYSQWPRAEDVDLEW 59 (127)
T ss_dssp EEEEEETTSBHHHHHHHHHHHHSTTSCGGGSCCGGGEEEEE
T ss_pred eeeeeeccCchhhhhHHHHHHHhccCCcccCCCCcccceEE
Confidence 456667799999999999876 3665 56788887
No 229
>1c1y_B Proto-onkogene serine/threonine protein kinase RAF-1; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: d.15.1.5 PDB: 1gua_B* 1rfa_A 3kud_B* 3kuc_B*
Probab=57.57 E-value=19 Score=20.43 Aligned_cols=44 Identities=14% Similarity=0.184 Sum_probs=32.4
Q ss_pred ceeeeeeeecceeeeeeccchhHHHHHhhhhhcCCCCCceEEEEC
Q 040204 36 TLHSVRRFRGGMQIFVESSDTIDNVKAKIQDKKGTPPDQQRQIFW 80 (97)
Q Consensus 36 ti~l~i~~~~g~~i~v~~~~TV~~lK~~I~~~~gip~~~q~Lif~ 80 (97)
++.+.....-...|.|.|..|+.+--.+.-++-|+.+ +++-+|.
T Consensus 3 ~irvhLPn~QrT~V~VrpG~tlrdaL~KaLk~R~L~p-e~C~V~~ 46 (77)
T 1c1y_B 3 TIRVFLPNKQRTVVNVRNGMSLHDCLMKALKVRGLQP-ECCAVFR 46 (77)
T ss_dssp EEEEEETTTEEEEEECCTTCBHHHHHHHHHHTTTCCG-GGEEEEE
T ss_pred eEEEECCCCceEEEEecCCcCHHHHHHHHHHHcCCCH-HHeEEEE
Confidence 3444433222356889999999999999999999987 6777883
No 230
>1iqo_A Hypothetical protein MTH1880; beta-alpha, anti-parallel, calcium binding, structural genomics, metal binding protein; NMR {Methanothermobacter} SCOP: d.214.1.1 PDB: 1iqs_A
Probab=55.38 E-value=10 Score=22.09 Aligned_cols=42 Identities=21% Similarity=0.527 Sum_probs=29.5
Q ss_pred CCEEeCCCCCCccceeccc-ceeeeeeeecceeeeeeccchhHHHHHhhhhh
Q 040204 17 AGKRLEDGRTLVDYNIHGS-TLHSVRRFRGGMQIFVESSDTIDNVKAKIQDK 67 (97)
Q Consensus 17 ~g~~L~d~~tL~~y~I~~s-ti~l~i~~~~g~~i~v~~~~TV~~lK~~I~~~ 67 (97)
.++.|+|+..++=.+|.|. .-| -+++++..+|+++|+.+++.
T Consensus 30 ekreLkddd~vAIlnI~gT~Sy~---------v~FLd~~~~ieeIk~eL~~~ 72 (88)
T 1iqo_A 30 EKKKLSDDDEIAIISIKGTQSNH---------VLFLSSYNSVDEIRKELEEA 72 (88)
T ss_dssp TTCCCSSCCCEEEEECTTTTCCE---------EEECSCCCSCHHHHHHHHHH
T ss_pred hcccCCCCCcEEEEEecCCceEE---------EEEEeCCCCHHHHHHHHHHc
Confidence 4566777777777777733 232 24568899999999998864
No 231
>1wxm_A A-RAF proto-oncogene serine/threonine-protein kinase; RAS-binding domain (RBD), ubiquitin-like fold, A-RAF kinase, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.5
Probab=53.97 E-value=25 Score=20.33 Aligned_cols=47 Identities=11% Similarity=0.111 Sum_probs=34.6
Q ss_pred ccceeeeeeeecceeeeeeccchhHHHHHhhhhhcCCCCCceEEEECe
Q 040204 34 GSTLHSVRRFRGGMQIFVESSDTIDNVKAKIQDKKGTPPDQQRQIFWF 81 (97)
Q Consensus 34 ~sti~l~i~~~~g~~i~v~~~~TV~~lK~~I~~~~gip~~~q~Lif~G 81 (97)
++++.+.....-...|.|.|..|+.+--.+.-++-|+.+ +++-+|..
T Consensus 7 ~~~irvhLPn~QrT~V~VrpG~tlrdaL~KaLk~R~L~p-e~C~Vy~~ 53 (86)
T 1wxm_A 7 GGTVKVYLPNKQRTVVTVRDGMSVYDSLDKALKVRGLNQ-DCCVVYRL 53 (86)
T ss_dssp SSEEEEECSSSCEEEEECCSSCBSHHHHHHHHHTTTCCS-SSEEEEEE
T ss_pred cceEEEECCCCCeEEEEecCCcCHHHHHHHHHHHcCCCH-HHeEEEEc
Confidence 445555443333356889999999999999999999987 67777743
No 232
>2v1y_A Phosphatidylinositol-4,5-bisphosphate 3-kinase Ca subunit alpha isoform; cancer, SH2 domain, SH3 domain, transferase, oncogen mutations, HOST-virus interaction; 2.4A {Bos taurus}
Probab=52.73 E-value=22 Score=21.35 Aligned_cols=37 Identities=14% Similarity=0.170 Sum_probs=26.7
Q ss_pred cceeeeeeeeccee--eeeeccchhHHHHHhhh-hhcCCC
Q 040204 35 STLHSVRRFRGGMQ--IFVESSDTIDNVKAKIQ-DKKGTP 71 (97)
Q Consensus 35 sti~l~i~~~~g~~--i~v~~~~TV~~lK~~I~-~~~gip 71 (97)
+.+.+.+-+++|+- +.+..+.|+.++|+.+= ++...|
T Consensus 18 ~~v~v~~LlPnGi~i~l~~~~~~tl~eiK~~lw~eA~~~P 57 (108)
T 2v1y_A 18 PRILVECLLPNGMIVTLECLREATLITIKHELFKEARKYP 57 (108)
T ss_dssp SEEEEEEECTTSCEEEEEEETTCBHHHHHHHHHHHGGGST
T ss_pred CcEEEEEEcCcEEEEEEEeeccccHHHHHHHHHHHHHhCc
Confidence 56777777888854 55688999999999883 434443
No 233
>4a3p_A Ubiquitin carboxyl-terminal hydrolase 15; 1.40A {Homo sapiens} PDB: 4a3o_A 3pv1_A 3ppa_A* 3t9l_A 3lmn_A
Probab=52.48 E-value=22 Score=23.49 Aligned_cols=32 Identities=22% Similarity=0.286 Sum_probs=26.8
Q ss_pred eeeeeccchhHHHHHhhhhhcCCCCC-ceEEEE
Q 040204 48 QIFVESSDTIDNVKAKIQDKKGTPPD-QQRQIF 79 (97)
Q Consensus 48 ~i~v~~~~TV~~lK~~I~~~~gip~~-~q~Lif 79 (97)
.+.+...+||.+++..+.+..++|++ +.||-.
T Consensus 143 ~~~~Sk~~ti~~l~~~~~~~~~i~~~~~~RlW~ 175 (217)
T 4a3p_A 143 TRRFSKADTIDTIEKEIRKIFSIPDEKETRLWN 175 (217)
T ss_dssp EEEECTTSBHHHHHHHHHHHTTCCTTSCEEEEE
T ss_pred EEEEcccchHHHHHHHHHHHhCCCCCCceEEEE
Confidence 35558899999999999999999987 677753
No 234
>3kuz_A Plexin-C1; structural genomics, structural genomics consortium, SGC; 2.30A {Homo sapiens}
Probab=50.03 E-value=6.5 Score=24.45 Aligned_cols=17 Identities=35% Similarity=0.622 Sum_probs=13.7
Q ss_pred CCCccceec-ccceeeee
Q 040204 25 RTLVDYNIH-GSTLHSVR 41 (97)
Q Consensus 25 ~tL~~y~I~-~sti~l~i 41 (97)
.||++|+|+ |+++-++.
T Consensus 108 NTL~HY~V~Dgatlal~k 125 (126)
T 3kuz_A 108 NTIGHYEISNGSTIKVFK 125 (126)
T ss_dssp CBTGGGTCCTTCEEEEEE
T ss_pred ccccccCCCCCCEEEEee
Confidence 367889999 99997764
No 235
>2cr5_A Reproduction 8; UBX domain, D0H8S2298E protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.15.1.2
Probab=48.87 E-value=39 Score=19.81 Aligned_cols=44 Identities=11% Similarity=-0.064 Sum_probs=32.4
Q ss_pred cceeeeeeeecceee--eeeccchhHHHHHhhhhhcCCCCCceEEEE
Q 040204 35 STLHSVRRFRGGMQI--FVESSDTIDNVKAKIQDKKGTPPDQQRQIF 79 (97)
Q Consensus 35 sti~l~i~~~~g~~i--~v~~~~TV~~lK~~I~~~~gip~~~q~Lif 79 (97)
.+..+.+|+++|..+ ....++||.+|..=|... +..+....|+-
T Consensus 22 ~~~~IqiRlpdG~r~~rrF~~~~tl~~v~~fv~~~-~~~~~~f~L~t 67 (109)
T 2cr5_A 22 EVVTVALRCPNGRVLRRRFFKSWNSQVLLDWMMKV-GYHKSLYRLST 67 (109)
T ss_dssp SEEEEEEECTTSCEEEEEEESSSBTHHHHHHHHHH-TCCTTTEEEEC
T ss_pred CcEEEEEECCCCCEEEEEeCCCCCHHHHHHHHHhc-CCCCCCeEEEe
Confidence 467888999888543 348899999999999854 45555666653
No 236
>3ig3_A Plxna3 protein; plexin intracellular GAP RBD inactive, membrane, transmembra membrane protein, signaling protein; 1.99A {Mus musculus} PDB: 3ryt_A*
Probab=47.34 E-value=21 Score=27.86 Aligned_cols=33 Identities=27% Similarity=0.452 Sum_probs=25.7
Q ss_pred eeeeeeccchhHHHHHhhhhh--cCCC------CCceEEEE
Q 040204 47 MQIFVESSDTIDNVKAKIQDK--KGTP------PDQQRQIF 79 (97)
Q Consensus 47 ~~i~v~~~~TV~~lK~~I~~~--~gip------~~~q~Lif 79 (97)
+.+.|-..|||..+|++|-+. .|.| +++..|-|
T Consensus 249 i~vkVLdCDTItQVKeKiLdavYk~~pyS~rP~~~~~dLEw 289 (627)
T 3ig3_A 249 VPVKVLNCDSITQAKDKLLDTVYKGIPYSQRPKAEDMDLEW 289 (627)
T ss_dssp EEEEEETTCBHHHHHHHHHHHHTTTSCGGGSCCGGGEEEEE
T ss_pred eeeEeeccCcHHHHHHHHHHHHHcCCCcccCCCCCccceeE
Confidence 556777899999999999876 3555 56777776
No 237
>3jyu_A Ubiquitin carboxyl-terminal hydrolase; domain in ubiquitin-specific peptidases (DUSP), proto- oncogene, ubiquitin-fold, UBL, protease, thioesterase; HET: 1PS; 2.37A {Mus musculus}
Probab=47.10 E-value=30 Score=23.10 Aligned_cols=31 Identities=16% Similarity=0.283 Sum_probs=26.5
Q ss_pred eeeeccchhHHHHHhhhhhcCCCCC-ceEEEE
Q 040204 49 IFVESSDTIDNVKAKIQDKKGTPPD-QQRQIF 79 (97)
Q Consensus 49 i~v~~~~TV~~lK~~I~~~~gip~~-~q~Lif 79 (97)
+.+...+||.+++..+....+++++ +.||-.
T Consensus 156 ~~~Sk~~ti~~l~~~~~~~~~i~~~~~~RLW~ 187 (231)
T 3jyu_A 156 CHFSKADTIATIEKEMRKLFNIPAERETRLWN 187 (231)
T ss_dssp EEECTTCBHHHHHHHHHHHTTCCTTSCEEEEE
T ss_pred EEecccCcHHHHHHHHHHHhCCCCCCeEEEEE
Confidence 4458889999999999999999997 577765
No 238
>2daj_A KIAA0977 protein, COBL-like 1; ubiquitin-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=46.16 E-value=42 Score=19.50 Aligned_cols=50 Identities=14% Similarity=0.090 Sum_probs=41.9
Q ss_pred ccceeeeeeeecce--eeeeeccchhHHHHHhhhhhcCCCCCceEEEECeEe
Q 040204 34 GSTLHSVRRFRGGM--QIFVESSDTIDNVKAKIQDKKGTPPDQQRQIFWFVF 83 (97)
Q Consensus 34 ~sti~l~i~~~~g~--~i~v~~~~TV~~lK~~I~~~~gip~~~q~Lif~G~~ 83 (97)
+.|+.++++..... -+.|.|..+..++--.|.++..+.|+...|.-...-
T Consensus 8 E~TvRLvVNy~~tQKtVvRVSP~vpL~ellp~IC~Kcefdp~~~~Ll~d~~~ 59 (91)
T 2daj_A 8 EKTVRVVINFKKTQKTIVRVSPHASLQELAPIICSKCEFDPLHTLLLKDYQS 59 (91)
T ss_dssp CSCEEEEEEETTTEEEEEEECSSSCTTTHHHHHHHHTTCCTTSEEEESCSSC
T ss_pred ccEEEEEEeecCcceeEEEeCCCCcHHHHHHHHhhcccCChhhEEEecCCCC
Confidence 77999999988773 367799999999999999999999998888755443
No 239
>1s3s_G P47 protein; AAA ATPase, protein-protein complex, UBX domain, protein binding; HET: ADP; 2.90A {Rattus norvegicus} SCOP: d.15.1.2 PDB: 1i42_A 1jru_A
Probab=46.15 E-value=31 Score=20.90 Aligned_cols=45 Identities=16% Similarity=0.147 Sum_probs=33.1
Q ss_pred cceeeeeeeecceee--eeeccchhHHHHHhhhhh-cCCCCCceEEEE
Q 040204 35 STLHSVRRFRGGMQI--FVESSDTIDNVKAKIQDK-KGTPPDQQRQIF 79 (97)
Q Consensus 35 sti~l~i~~~~g~~i--~v~~~~TV~~lK~~I~~~-~gip~~~q~Lif 79 (97)
.+..+.+|+.+|..+ ....++||.+|.+-|... .+.......|+-
T Consensus 51 ~~t~IqIRlpdG~rl~~rF~~~~tl~~v~~fV~~~~~~~~~~~f~L~t 98 (127)
T 1s3s_G 51 PTTNIQIRLADGGRLVQKFNHSHRISDIRLFIVDARPAMAATSFVLMT 98 (127)
T ss_dssp CCCCEEEEETTTTEEEEECCSSCBHHHHHHHHHHHCSGGGTSCEEEEE
T ss_pred CcEEEEEECCCCCEEEEEeCCCCCHHHHHHHHHHhCcCCCCCCeEEec
Confidence 467788888888443 448899999999999875 345556666664
No 240
>3hm6_X Plexin-B1; structural genomics consortium, SGC, membrane, transmembrane receptor, cell membrane, glycoprotein, phosphoprotein; 2.40A {Homo sapiens} PDB: 3sua_D* 3su8_X*
Probab=44.55 E-value=36 Score=26.67 Aligned_cols=33 Identities=33% Similarity=0.512 Sum_probs=25.3
Q ss_pred eeeeeeccchhHHHHHhhhhh--cCCC------CCceEEEE
Q 040204 47 MQIFVESSDTIDNVKAKIQDK--KGTP------PDQQRQIF 79 (97)
Q Consensus 47 ~~i~v~~~~TV~~lK~~I~~~--~gip------~~~q~Lif 79 (97)
+.+.|-..|||..+|++|-+. .|.| +++..|-|
T Consensus 276 i~VkVLdCDTItQVKeKiLDavYk~~pyS~rP~~~~~dLEw 316 (644)
T 3hm6_X 276 VPVKVLDCDTISQAKEKMLDQLYKGVPLTQRPDPRTLDVEW 316 (644)
T ss_dssp EEEEEETTSBHHHHHHHHHHHHTTTSCGGGSCCGGGEEEEE
T ss_pred eeeEeeccCcHHHHHHHHHHHHHcCCCcccCCCCCCcceEE
Confidence 556777899999999999876 3666 45667776
No 241
>1y8x_B Ubiquitin-activating enzyme E1C; ubiquitin-conjugating enzyme E2 M, ligase; 2.40A {Homo sapiens} SCOP: c.111.1.2 PDB: 3fn1_A
Probab=43.79 E-value=31 Score=20.25 Aligned_cols=43 Identities=12% Similarity=0.024 Sum_probs=31.6
Q ss_pred eeeeeeccchhHHHHHhhhhhcCCCCCceEEEEC--eEeCCCcccee
Q 040204 47 MQIFVESSDTIDNVKAKIQDKKGTPPDQQRQIFW--FVFGWGSLWMP 91 (97)
Q Consensus 47 ~~i~v~~~~TV~~lK~~I~~~~gip~~~q~Lif~--G~~~~~~~~~~ 91 (97)
..+.++++.|..++-+.+.+...+....=.|.++ |+. ++|+|.
T Consensus 7 ~~l~v~~~~TL~~lid~L~~~p~~qlk~PSltt~~~~~~--k~LYmq 51 (98)
T 1y8x_B 7 QNIQFSPSAKLQEVLDYLTNSASLQMKSPAITATLEGKN--RTLYMQ 51 (98)
T ss_dssp CCEECCTTCBHHHHHHHHHHCTTCCCSSCEEEEEETTEE--EEEECS
T ss_pred EEEEECCchhHHHHHHHHHhChHhhccCCeeeeecCCCC--CeEEEe
Confidence 5678899999999999999876666555556555 334 677774
No 242
>1ef1_A Moesin; membrane, FERM domain, tail domain, membrane protein; 1.90A {Homo sapiens} SCOP: a.11.2.1 b.55.1.5 d.15.1.4 PDB: 1sgh_A 1j19_A 2emt_A 2ems_A 2d10_A 2d11_A 2yvc_A 2d2q_A 2zpy_A 1gc7_A 1gc6_A 1ni2_A
Probab=43.11 E-value=31 Score=23.32 Aligned_cols=43 Identities=5% Similarity=-0.024 Sum_probs=31.4
Q ss_pred eeeeeeeecc-eeeeeeccchhHHHHHhhhhhcCCCC-CceEEEE
Q 040204 37 LHSVRRFRGG-MQIFVESSDTIDNVKAKIQDKKGTPP-DQQRQIF 79 (97)
Q Consensus 37 i~l~i~~~~g-~~i~v~~~~TV~~lK~~I~~~~gip~-~~q~Lif 79 (97)
+.+.+...+| .++.++++.|+.++=+.|.++.|+.. +-.-|.|
T Consensus 2 i~~~V~l~d~~~~~~v~~~tt~~el~~~v~~~l~L~e~~~FgL~~ 46 (294)
T 1ef1_A 2 ISVRVTTMDAELEFAIQPNTTGKQLFDQVVKTIGLREVWFFGLQY 46 (294)
T ss_dssp EEEEEEETTEEEEEEECTTCBHHHHHHHHHHHHTCCCGGGEEEEE
T ss_pred EEEEEEECCceEEEEECCCCcHHHHHHHHHHHcCCCCcceeEEEE
Confidence 4455555555 55777999999999999999999864 3345555
No 243
>1wfy_A Regulator of G-protein signaling 14; RAP1/RAP2 interacting protein; regulators of G-protein signaling, RAS family, structural genomics; NMR {Mus musculus} SCOP: d.15.1.5
Probab=42.00 E-value=20 Score=21.50 Aligned_cols=60 Identities=12% Similarity=-0.022 Sum_probs=42.9
Q ss_pred CCCCccceec-ccceeeeeee-ecc--eeeeeeccchhHHHHHhhhhhcCCCCCceEEEECeEe
Q 040204 24 GRTLVDYNIH-GSTLHSVRRF-RGG--MQIFVESSDTIDNVKAKIQDKKGTPPDQQRQIFWFVF 83 (97)
Q Consensus 24 ~~tL~~y~I~-~sti~l~i~~-~~g--~~i~v~~~~TV~~lK~~I~~~~gip~~~q~Lif~G~~ 83 (97)
...|++-.+. +-.+.+.... ..+ +.|..+++.++.++-.-|-.+.|+..++..+.-.|..
T Consensus 3 SsiL~~qEVrlE~Rv~F~L~l~p~~ksI~IksKptK~l~evLrPIL~KY~l~l~qv~v~~~g~~ 66 (104)
T 1wfy_A 3 SGSSGDQEVRLENRITFQLELVGLERVVRISAKPTKRLQEALQPILAKHGLSLDQVVLHRPGEK 66 (104)
T ss_dssp CCCCCCCCCCCCSCEEEEEEESSSSSEEEEEECSSSBTTTTTHHHHTTTTCCTTTCCBCCTTCS
T ss_pred cccccCceEEEEeeEEEEEeccCCCcEEEEEecCCCcHHHHHHHHHHHcCCChhhEEEEecCCc
Confidence 3456666666 5555555544 333 4456699999999999999999998888777666655
No 244
>3jyu_A Ubiquitin carboxyl-terminal hydrolase; domain in ubiquitin-specific peptidases (DUSP), proto- oncogene, ubiquitin-fold, UBL, protease, thioesterase; HET: 1PS; 2.37A {Mus musculus}
Probab=40.29 E-value=23 Score=23.72 Aligned_cols=44 Identities=18% Similarity=0.163 Sum_probs=33.4
Q ss_pred cccCCCCc-ceEEEE-C----CEEeCC-CCCCccceec-ccceeeeeeeecc
Q 040204 3 DKEEILRD-QQRFIF-A----GKRLED-GRTLVDYNIH-GSTLHSVRRFRGG 46 (97)
Q Consensus 3 ~~~gip~~-~Q~L~~-~----g~~L~d-~~tL~~y~I~-~sti~l~i~~~~g 46 (97)
+..+||++ +-||.. + ...|.| +.||.++++. +..|.+-++..+|
T Consensus 173 ~~~~i~~~~~~RLW~~~~~~~~~~L~~~~~tl~d~~L~~~Q~illE~r~~dg 224 (231)
T 3jyu_A 173 KLFNIPAERETRLWNKYMSNTYEQLSKLDNTIQDAGLYQGQVLVIEPQNEDG 224 (231)
T ss_dssp HHTTCCTTSCEEEEECSSSSSCEECCCTTSBTTTTTCCTTEEEEEEECCTTS
T ss_pred HHhCCCCCCeEEEEEecCCCCHhhhcCCCCCHHHhCCCCCCEEEEEEecCCC
Confidence 34688887 689986 2 345665 5899999999 9999888876655
No 245
>1wgr_A Growth factor receptor-bound protein 7; RA domain, GRB7, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.15.1.5
Probab=40.18 E-value=29 Score=20.47 Aligned_cols=37 Identities=14% Similarity=0.093 Sum_probs=27.5
Q ss_pred eeeeeecc--eeeeeeccchhHHHHHhhhhhcCCCCCce
Q 040204 39 SVRRFRGG--MQIFVESSDTIDNVKAKIQDKKGTPPDQQ 75 (97)
Q Consensus 39 l~i~~~~g--~~i~v~~~~TV~~lK~~I~~~~gip~~~q 75 (97)
+.+-..+| ..|.|++++|+.++=+++.++.++..+.-
T Consensus 12 vkvf~~Dgssksi~V~~~~Ta~dv~~~L~~K~~~~~~~~ 50 (100)
T 1wgr_A 12 VKVYSEDGACRSVEVAAGATARHVCEMLVQRAHALSDET 50 (100)
T ss_dssp EEEEETTSCEEEEEECTTCCHHHHHHHHHCSSSCCCCCC
T ss_pred EEEEecCCCEEEEEECCCCcHHHHHHHHHHHcCCCCCCC
Confidence 33334444 56888999999999999999988764443
No 246
>1vd2_A Protein kinase C, IOTA type; PB1 domain, OPCA motif, APKC, ZIP/P62, MEK5, molecular recognition, transferase; NMR {Homo sapiens} SCOP: d.15.2.2 PDB: 1wmh_A
Probab=39.80 E-value=54 Score=18.86 Aligned_cols=48 Identities=15% Similarity=0.115 Sum_probs=34.5
Q ss_pred ceeeeeeeecc-eeeeeeccchhHHHHHhhhhhcCCCCCc-eEEEECeEe
Q 040204 36 TLHSVRRFRGG-MQIFVESSDTIDNVKAKIQDKKGTPPDQ-QRQIFWFVF 83 (97)
Q Consensus 36 ti~l~i~~~~g-~~i~v~~~~TV~~lK~~I~~~~gip~~~-q~Lif~G~~ 83 (97)
.+.+.....+. +.+.++++-+-.+|.+++++..+++..+ ..+-|..-.
T Consensus 6 ~vkvK~~~~gdi~~~~v~~~i~~~~L~~kv~~~~~~~~~~~f~lky~DEe 55 (89)
T 1vd2_A 6 QVRVKAYYRGDIMITHFEPSISFEGLCNEVRDMCSFDNEQLFTMKWIDEE 55 (89)
T ss_dssp CEEEEEESSSCEEEEEECTTCCHHHHHHHHHHHTTCCSSCCEEEEECCSS
T ss_pred eEEEEEEeCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCeEEEEEECCC
Confidence 44455544444 3456788999999999999999987544 777777654
No 247
>3b64_A Macrophage migration inhibitory factor-like protein; cytokine, MIF, LM1740MIF, lmmif, unknown function; 1.03A {Leishmania major}
Probab=37.44 E-value=44 Score=19.21 Aligned_cols=76 Identities=16% Similarity=0.110 Sum_probs=42.7
Q ss_pred cccCCCCcceEEEECCEEeCCCCCCccceecccceeeeeeeecceeeeeeccchhHHHHHhhhhhcCCCCCceEEEECeE
Q 040204 3 DKEEILRDQQRFIFAGKRLEDGRTLVDYNIHGSTLHSVRRFRGGMQIFVESSDTIDNVKAKIQDKKGTPPDQQRQIFWFV 82 (97)
Q Consensus 3 ~~~gip~~~Q~L~~~g~~L~d~~tL~~y~I~~sti~l~i~~~~g~~i~v~~~~TV~~lK~~I~~~~gip~~~q~Lif~G~ 82 (97)
+..|.|++.+-+.+. ++..+.--|-......+.++..+|..-. ....-++.+-+.+++..|+|++...+.|...
T Consensus 29 ~~~gkPe~~~~v~~~-----~~~~~~~~G~~~~~~~i~i~~~~g~~~e-qk~~l~~~i~~~l~~~lgi~~~~v~I~~~e~ 102 (112)
T 3b64_A 29 DVLGKPEDLVMMTFH-----DSTPMHFFGSTDPVACVRVEALGGYGPS-EPEKVTSIVTAAITKECGIVADRIFVLYFSP 102 (112)
T ss_dssp HTSCSCGGGCEEEEE-----CSCCCCBTTBCSSCEEEEEECTTCCCTT-HHHHHHHHHHHHHHHHHCCCGGGEEEEEECC
T ss_pred HHhCCCHHHEEEEEe-----CCceEEECCCCCCEEEEEEEEcCCCCHH-HHHHHHHHHHHHHHHHhCcCcceEEEEEEEh
Confidence 456788877666553 2222211121234444555555544211 1123445677778888999999999888655
Q ss_pred eC
Q 040204 83 FG 84 (97)
Q Consensus 83 ~~ 84 (97)
.+
T Consensus 103 ~~ 104 (112)
T 3b64_A 103 LH 104 (112)
T ss_dssp SC
T ss_pred hH
Confidence 43
No 248
>2l05_A Serine/threonine-protein kinase B-RAF; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative; NMR {Homo sapiens}
Probab=37.11 E-value=58 Score=19.11 Aligned_cols=34 Identities=12% Similarity=0.132 Sum_probs=28.8
Q ss_pred eeeeeeccchhHHHHHhhhhhcCCCCCceEEEECe
Q 040204 47 MQIFVESSDTIDNVKAKIQDKKGTPPDQQRQIFWF 81 (97)
Q Consensus 47 ~~i~v~~~~TV~~lK~~I~~~~gip~~~q~Lif~G 81 (97)
..|.|.|..|+.+.-.+.-++-|+.+ +++-+|..
T Consensus 30 T~V~VrpG~tlrdAL~KaLk~R~L~p-e~C~Vy~~ 63 (95)
T 2l05_A 30 TVVPARCGVTVRDSLKKALMMRGLIP-ECCAVYRI 63 (95)
T ss_dssp EEEECCTTCBHHHHHHHHHHHHTCCG-GGEEEEEE
T ss_pred EEEEecCCcCHHHHHHHHHHHcCCCH-HHcEEEEc
Confidence 55888999999999999999999977 67777743
No 249
>2ylm_A Ubiquitin carboxyl-terminal hydrolase 7; UBL; 2.70A {Homo sapiens}
Probab=36.96 E-value=25 Score=26.56 Aligned_cols=26 Identities=12% Similarity=0.179 Sum_probs=22.1
Q ss_pred eeeeeeccchhHHHHHhhhhhcCCCC
Q 040204 47 MQIFVESSDTIDNVKAKIQDKKGTPP 72 (97)
Q Consensus 47 ~~i~v~~~~TV~~lK~~I~~~~gip~ 72 (97)
+-+.|.+.+|..++|++|+++.|++.
T Consensus 453 F~~~v~~gEt~~~~k~Rl~~rlgv~~ 478 (530)
T 2ylm_A 453 FLLRIHQGEHFREVMKRIQSLLDIQE 478 (530)
T ss_dssp EEEEEETTCCHHHHHHHHHHHHCCCH
T ss_pred eEEEecCCCcHHHHHHHHHHHhCCCH
Confidence 34556889999999999999999983
No 250
>1h4r_A Merlin; FERM, neurofibromatosis, NF2, structural protein, cytoskeleton, anti-oncogene; 1.8A {Homo sapiens} SCOP: a.11.2.1 b.55.1.5 d.15.1.4 PDB: 1isn_A 3u8z_A
Probab=34.90 E-value=51 Score=22.53 Aligned_cols=47 Identities=9% Similarity=-0.160 Sum_probs=34.9
Q ss_pred ccceeeeeeeecc-eeeeeeccchhHHHHHhhhhhcCCC-CCceEEEEC
Q 040204 34 GSTLHSVRRFRGG-MQIFVESSDTIDNVKAKIQDKKGTP-PDQQRQIFW 80 (97)
Q Consensus 34 ~sti~l~i~~~~g-~~i~v~~~~TV~~lK~~I~~~~gip-~~~q~Lif~ 80 (97)
+..+.+.+...+| ..+.++++.|+.++=+.|.++.|+. .+-.-|.|.
T Consensus 20 ~~~~~~~V~lldg~~~~~v~~~t~~~el~~~v~~~l~L~e~~~FgL~~~ 68 (314)
T 1h4r_A 20 PKTFTVRIVTMDAEMEFNCEMKWKGKDLFDLVCRTLGLRETWFFGLQYT 68 (314)
T ss_dssp -CEEEEEEECSSCEEEEEEETTCBHHHHHHHHHHHHTCCCGGGEEEEEE
T ss_pred CCeeEEEEEeCCceEEEEeCCCCcHHHHHHHHHHHhCCCCCccceEEEE
Confidence 4566666766666 4577799999999999999999976 444566664
No 251
>2os5_A Acemif; macrophage migration inhibitory factor, cytokine, nematode,; 1.60A {Ancylostoma ceylanicum} PDB: 3rf4_A* 3rf5_A*
Probab=34.01 E-value=51 Score=19.18 Aligned_cols=74 Identities=9% Similarity=0.066 Sum_probs=44.6
Q ss_pred cccCCCCcceEEEECCEEeCCCCCCccceec-ccceeeeeeeecceeeeeeccchhHHHHHhhhhhcCCCCCceEEEECe
Q 040204 3 DKEEILRDQQRFIFAGKRLEDGRTLVDYNIH-GSTLHSVRRFRGGMQIFVESSDTIDNVKAKIQDKKGTPPDQQRQIFWF 81 (97)
Q Consensus 3 ~~~gip~~~Q~L~~~g~~L~d~~tL~~y~I~-~sti~l~i~~~~g~~i~v~~~~TV~~lK~~I~~~~gip~~~q~Lif~G 81 (97)
+..|.|++.+.+.+. ++..+. ++-. .....+.++..+|..-. ....-++.+-+.+++..|+|++...+.|..
T Consensus 29 ~~lgkP~~~~~v~~~-----~~~~~~-~~g~~~~~~~i~I~~~~g~~~e-qk~~l~~~i~~~l~~~lgi~~~~v~I~~~e 101 (119)
T 2os5_A 29 ESMNKPRNRIAIEVL-----AGQRIT-HGASRNPVAVIKVESIGALSAD-DNIRHTQKITQFCQDTLKLPKDKVIITYFD 101 (119)
T ss_dssp HHHTCCGGGCEEEEE-----CSCCCC-BTTBCSSCEEEEEEESSCCCHH-HHHHHHHHHHHHHHHHHCCCGGGEEEEEEE
T ss_pred HHHCcChHHEEEEEE-----CCccEE-EcCCCCCeEEEEEEEecCCCHH-HHHHHHHHHHHHHHHHhCcCcccEEEEEEE
Confidence 446888887777662 222221 2223 44455555555554211 112345567777888899999999999877
Q ss_pred Ee
Q 040204 82 VF 83 (97)
Q Consensus 82 ~~ 83 (97)
..
T Consensus 102 ~~ 103 (119)
T 2os5_A 102 LQ 103 (119)
T ss_dssp CC
T ss_pred CC
Confidence 66
No 252
>3he4_B Synzip5; heterodimeric coiled-coil, de novo protein; 2.46A {Artificial gene}
Probab=32.94 E-value=22 Score=17.51 Aligned_cols=15 Identities=33% Similarity=0.501 Sum_probs=11.0
Q ss_pred cchhHHHHHhhhhhc
Q 040204 54 SDTIDNVKAKIQDKK 68 (97)
Q Consensus 54 ~~TV~~lK~~I~~~~ 68 (97)
+.||.++|.-|++.+
T Consensus 2 sntvkelknyiqele 16 (46)
T 3he4_B 2 SNTVKELKNYIQELE 16 (46)
T ss_dssp -CCHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHH
Confidence 468889998887654
No 253
>1wgy_A RAP guanine nucleotide exchange factor 5; ubiquitin fold, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.5
Probab=30.19 E-value=62 Score=19.24 Aligned_cols=32 Identities=6% Similarity=0.111 Sum_probs=25.8
Q ss_pred eeeeeeccchhHHHHHhhhhhcCCCCCceEEE
Q 040204 47 MQIFVESSDTIDNVKAKIQDKKGTPPDQQRQI 78 (97)
Q Consensus 47 ~~i~v~~~~TV~~lK~~I~~~~gip~~~q~Li 78 (97)
..+.+..+.|+.+++..+.++.+...+.+.|+
T Consensus 22 ~tvr~~v~~sa~eIl~~va~kl~~~~e~l~Lv 53 (104)
T 1wgy_A 22 VSVKAKVSSIAQEILKVVAEKIQYAEEDLALV 53 (104)
T ss_dssp EEECCCTTCBSHHHHHHHHHHHTSCGGGEEEE
T ss_pred EEEEEeccchHHHHHHHHHHHhcCCccceEEE
Confidence 44556788999999999999998876677775
No 254
>1pqs_A Cell division control protein 24; alpha and beta protein, cell cycle; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 1tz1_A
Probab=29.90 E-value=34 Score=19.13 Aligned_cols=36 Identities=14% Similarity=0.133 Sum_probs=28.4
Q ss_pred eeeeeeccchhHHHHHhhhhhcCCC-----CCceEEEECeE
Q 040204 47 MQIFVESSDTIDNVKAKIQDKKGTP-----PDQQRQIFWFV 82 (97)
Q Consensus 47 ~~i~v~~~~TV~~lK~~I~~~~gip-----~~~q~Lif~G~ 82 (97)
+.|.|.++-+-.+|..+|.++-+.. ....+|-|+..
T Consensus 4 ~~i~V~~~i~f~~L~~kI~~kl~~~~~~~~~~~~~lkYkDE 44 (77)
T 1pqs_A 4 FTLLVEKVWNFDDLIMAINSKISNTHNNNISPITKIKYQDE 44 (77)
T ss_dssp EEEECTTCCCSHHHHHHHHHHTTTTTSSCSCSTTCCEEEET
T ss_pred EEEEeCCCCCHHHHHHHHHHHHcccccccccceeEEEEEcC
Confidence 3466788889999999999998865 46677888775
No 255
>1rrb_A RAF-1 RBD, RAF proto-oncogene serine/threonine-protein kinase; RAS-binding domain, transferase, riken structural genomics/proteomics initiative; NMR {Rattus norvegicus} SCOP: d.15.1.5
Probab=29.36 E-value=81 Score=18.91 Aligned_cols=46 Identities=13% Similarity=0.197 Sum_probs=34.0
Q ss_pred cceeeeeeeecceeeeeeccchhHHHHHhhhhhcCCCCCceEEEECe
Q 040204 35 STLHSVRRFRGGMQIFVESSDTIDNVKAKIQDKKGTPPDQQRQIFWF 81 (97)
Q Consensus 35 sti~l~i~~~~g~~i~v~~~~TV~~lK~~I~~~~gip~~~q~Lif~G 81 (97)
++|.+.....--..|.|.+..|+.+.-.+.-.+-|+.+ +++-+|..
T Consensus 19 ~~ir~hLPNqQrT~V~VrpG~tlrdaL~KaLk~R~L~p-e~C~Vy~~ 64 (107)
T 1rrb_A 19 NTIRVFLPNKQRTVVNVRNGMSLHDCLMKALKVRGLQP-ECCAVFRL 64 (107)
T ss_dssp CEEEEECTTTCCEEEECCTTCBHHHHHHHHHHHHTCCT-TTEEEEEC
T ss_pred ceEEEECCCCCeEEEEecCCcCHHHHHHHHHHHcCCCH-HHceeEEc
Confidence 34544443333356889999999999999999999986 77888833
No 256
>3khf_A Microtubule-associated serine/threonine-protein kinase 3; MAST3, microtubule associated serine/threonine kinase 3, PDZ domain, structural genomics; 1.20A {Homo sapiens} PDB: 2w7r_A 2kqf_A 2kyl_A 3ps4_A
Probab=28.34 E-value=16 Score=20.41 Aligned_cols=18 Identities=6% Similarity=-0.014 Sum_probs=9.3
Q ss_pred cCCCCcceEEEECCEEeC
Q 040204 5 EEILRDQQRFIFAGKRLE 22 (97)
Q Consensus 5 ~gip~~~Q~L~~~g~~L~ 22 (97)
.|+.+.+..+..+|+.+.
T Consensus 50 aGl~~GD~I~~ing~~v~ 67 (99)
T 3khf_A 50 AGLRAGDLITHINGESVL 67 (99)
T ss_dssp HTCCTTCEEEEETTEECT
T ss_pred cCCCCCCEEEEECCEECC
Confidence 345555555555555554
No 257
>3qij_A Protein 4.1; cytoskeleton, structural genomics, structural genomics conso SGC; 1.80A {Homo sapiens} PDB: 1gg3_A 3bin_A 2he7_A 2rq1_A
Probab=28.27 E-value=60 Score=22.20 Aligned_cols=49 Identities=10% Similarity=0.020 Sum_probs=36.2
Q ss_pred ccceeeeeeeecc--eeeeeeccchhHHHHHhhhhhcCCCC-CceEEEECeE
Q 040204 34 GSTLHSVRRFRGG--MQIFVESSDTIDNVKAKIQDKKGTPP-DQQRQIFWFV 82 (97)
Q Consensus 34 ~sti~l~i~~~~g--~~i~v~~~~TV~~lK~~I~~~~gip~-~~q~Lif~G~ 82 (97)
...+.+.+...+| ..+.|+++.|+.++=..|.++.|+.. +-.-|.|...
T Consensus 15 ~~~~~~~V~lldgt~~~~~vd~~tt~~el~~~v~~~l~L~e~~~FgL~~~~~ 66 (296)
T 3qij_A 15 YFQGHCKVSLLDDTVYECVVEKHAKGQDLLKRVCEHLNLLEEDYFGLAIWDN 66 (296)
T ss_dssp --CCEEEEECTTSCEEEEECCTTCBHHHHHHHHHHHHTCSSGGGEEEEEEEE
T ss_pred CceEEEEEEccCCCEEEEEECCCCCHHHHHHHHHHHcCCCCcceeEEEEEcC
Confidence 4456777777777 44677999999999999999999764 4467777643
No 258
>2c7h_A RBBP6, retinoblastoma-binding protein 6, isoform 3; P53-associated, mRNA processing, splicing-associated, oesophageal cancer; NMR {Homo sapiens}
Probab=28.07 E-value=66 Score=18.48 Aligned_cols=28 Identities=7% Similarity=0.029 Sum_probs=20.0
Q ss_pred eccchhHHHHHhhhhhcCCCCCceEEEE
Q 040204 52 ESSDTIDNVKAKIQDKKGTPPDQQRQIF 79 (97)
Q Consensus 52 ~~~~TV~~lK~~I~~~~gip~~~q~Lif 79 (97)
-..-+|.+||..|-++.++-..+--|..
T Consensus 26 G~~Isv~dLKr~I~~~~kl~~~dfDL~i 53 (86)
T 2c7h_A 26 GLHISLCDLKKQIMGREKLKAADCDLQI 53 (86)
T ss_dssp SSEEEHHHHHHHHHHHHTCCTTTEEEEE
T ss_pred CCEEEHHHHHHHHHHHhCCCCCcccEEE
Confidence 3466999999999988876544444443
No 259
>4gmv_A RAS-associated and pleckstrin homology domains-CO protein 1; RA-PH, coiled-coil region, RAS-association domain, pleckstri homology domain; 2.40A {Homo sapiens} PDB: 4gn1_A
Probab=27.17 E-value=78 Score=21.96 Aligned_cols=37 Identities=16% Similarity=0.147 Sum_probs=28.2
Q ss_pred eeeeeeccchhHHHHHhhhhhcCCCCCceEEEECeEe
Q 040204 47 MQIFVESSDTIDNVKAKIQDKKGTPPDQQRQIFWFVF 83 (97)
Q Consensus 47 ~~i~v~~~~TV~~lK~~I~~~~gip~~~q~Lif~G~~ 83 (97)
..|.|++++|+++|-+.+.++.+.+.+.-.-+|.-..
T Consensus 44 ~~l~V~~~~TA~dv~~~L~~k~~~~~~~~W~L~E~~~ 80 (281)
T 4gmv_A 44 KTMMVDERQTVRQVLDNLMDKSHCGYSLDWSLVETVS 80 (281)
T ss_dssp EEEEEETTCBHHHHHHHHHHHSCCCCCTTCEEEEEEG
T ss_pred EEEEECCCCcHHHHHHHHHHhcCCCCCCCeEEEEEcC
Confidence 5688899999999999888888876655555555433
No 260
>3au4_A Myosin-X; protein-protein complex, motor protein cargo transportation, protein-apoptosis complex; 1.90A {Homo sapiens} PDB: 3au5_A 3pzd_A
Probab=27.10 E-value=70 Score=23.85 Aligned_cols=46 Identities=17% Similarity=0.137 Sum_probs=35.8
Q ss_pred ccceeeeeeeecc--eeeeeeccchhHHHHHhhhhhcCCCC--CceEEEE
Q 040204 34 GSTLHSVRRFRGG--MQIFVESSDTIDNVKAKIQDKKGTPP--DQQRQIF 79 (97)
Q Consensus 34 ~sti~l~i~~~~g--~~i~v~~~~TV~~lK~~I~~~~gip~--~~q~Lif 79 (97)
+..+.+.+...+| ..+.++++.|+.++-+.|.++.|+.. +-.-|.+
T Consensus 214 ~~~~~~~V~l~dg~~~~~~v~~~tt~~el~~~v~~~lgL~e~~~~FgL~~ 263 (555)
T 3au4_A 214 RQEMTSTVYCHGGGSCKITINSHTTAGEVVEKLIRGLAMEDSRNMFALFE 263 (555)
T ss_dssp TCCEEEEEEETTSCEEEEEECTTCBHHHHHHHHHHHTTCTTCCSEEEEEE
T ss_pred CCCcceEEEecCCCeEEEEeCCCCcHHHHHHHHHHHcCCCCCCCceEEEE
Confidence 4566777777777 45777999999999999999999874 4556655
No 261
>3ny5_A Serine/threonine-protein kinase B-RAF; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics consortium; HET: MSE; 1.99A {Homo sapiens} SCOP: d.15.1.0
Probab=25.73 E-value=1.1e+02 Score=17.99 Aligned_cols=46 Identities=9% Similarity=0.068 Sum_probs=33.3
Q ss_pred cceeeeeeeecceeeeeeccchhHHHHHhhhhhcCCCCCceEEEECe
Q 040204 35 STLHSVRRFRGGMQIFVESSDTIDNVKAKIQDKKGTPPDQQRQIFWF 81 (97)
Q Consensus 35 sti~l~i~~~~g~~i~v~~~~TV~~lK~~I~~~~gip~~~q~Lif~G 81 (97)
+++.+.....-...|.|.|..|+.+--.+.-++-|+.+ +++-+|..
T Consensus 14 ~~irvhLPNqQrT~V~VrpG~tlrdaL~KaLk~R~L~p-e~C~Vy~~ 59 (96)
T 3ny5_A 14 PIVRVFLPNKQRTVVPARCGVTVRDSLKKALMMRGLIP-ECCAVYRI 59 (96)
T ss_dssp CEEEEEETTTEEEEEECCTTCBHHHHHHHHHHTTTCCG-GGEEEEEC
T ss_pred CEEEEECCCCceEEEEecCCcCHHHHHHHHHHHcCCCh-HHeEEEEc
Confidence 34444443222355888999999999999999999977 67777754
No 262
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A
Probab=24.48 E-value=89 Score=23.80 Aligned_cols=46 Identities=4% Similarity=-0.066 Sum_probs=34.1
Q ss_pred ceeeeeeeecc-eeeeeeccchhHHHHHhhhhhcCCC-CCceEEEECe
Q 040204 36 TLHSVRRFRGG-MQIFVESSDTIDNVKAKIQDKKGTP-PDQQRQIFWF 81 (97)
Q Consensus 36 ti~l~i~~~~g-~~i~v~~~~TV~~lK~~I~~~~gip-~~~q~Lif~G 81 (97)
.+.+.+.+.+| ..+.|+++.|+.+|=..|....|++ .+-.-|.|..
T Consensus 4 ~i~v~V~llDgt~e~~vd~~tt~~ell~~V~~~LgL~e~~~FGL~~~d 51 (575)
T 2i1j_A 4 SMNVRVTTMDAELEFAIQQTTTGKQLFDQVVKTIGLREVWFFGLQYTD 51 (575)
T ss_dssp EEEEEEECSSCEEEEEEETTCBHHHHHHHHHHHHTCCCGGGEEEEEEB
T ss_pred eEEEEEEeCCCeEEEEECCCCCHHHHHHHHHHHcCCCCccceeEEEEe
Confidence 45556666666 5577799999999999999999985 4456666643
No 263
>3ivf_A Talin-1; FERM domain, cell membrane, cell projection, cytoskeleton, M phosphoprotein, cell adhesion, structural protein; 1.94A {Mus musculus} PDB: 2kma_A 2kc1_A
Probab=24.02 E-value=1.4e+02 Score=20.95 Aligned_cols=56 Identities=13% Similarity=0.096 Sum_probs=37.0
Q ss_pred eeeeeeeecc-eeeeeeccchhHHHHHhhhhhcC----CCCCceEEEECeEeCCCccceec
Q 040204 37 LHSVRRFRGG-MQIFVESSDTIDNVKAKIQDKKG----TPPDQQRQIFWFVFGWGSLWMPL 92 (97)
Q Consensus 37 i~l~i~~~~g-~~i~v~~~~TV~~lK~~I~~~~g----ip~~~q~Lif~G~~~~~~~~~~~ 92 (97)
+.+.+...+- ..+..+|+.||.++-.+|.|+.. .++++..|.......-...|+..
T Consensus 4 ~~~~~~~~~~~~~~~f~~~~~v~~~~~~i~e~~~~~~~~~~~~y~l~~~~~~~~~~~Wl~~ 64 (371)
T 3ivf_A 4 LSLKISIGNVVKTMQFEPSTMVYDACRMIRERIPEALAGPPNDFGLFLSDDDPKKGIWLEA 64 (371)
T ss_dssp EEEEEEETTEEEEEEECTTCBHHHHHHHHHTTCGGGGSSCGGGEEEEECCSSGGGCEECCT
T ss_pred EEEEEEecceeEEEEECCCCCHHHHHHHHHHhcccccCCCHHHCeEeccCCCCCcCEeccC
Confidence 3344444322 34677999999999999887753 47889888885542225667654
No 264
>4gdk_A Ubiquitin-like protein ATG12; protein-protein conjugate, protein-protein complex, ubiquiti protein, E3 ligase, ubiquitin-like fold; 2.70A {Homo sapiens} PDB: 4gdl_A
Probab=23.55 E-value=1.1e+02 Score=17.44 Aligned_cols=32 Identities=22% Similarity=0.118 Sum_probs=26.7
Q ss_pred eeeeccchhHHHHHhhhhhcCCCCCceEEEEC
Q 040204 49 IFVESSDTIDNVKAKIQDKKGTPPDQQRQIFW 80 (97)
Q Consensus 49 i~v~~~~TV~~lK~~I~~~~gip~~~q~Lif~ 80 (97)
..|..+.||+.+..-|+.+-++++++--.+|=
T Consensus 24 flVp~~~tv~~~~~~lRkrL~l~~~~alFlyV 55 (91)
T 4gdk_A 24 WAVERTRTIQGLIDFIKKFLKLVASEQLFIYV 55 (91)
T ss_dssp EEEETTCBHHHHHHHHHHHTTCCSSSCCEEEE
T ss_pred EEcCCCCCHHHHHHHHHHHhCCCCCCeEEEEE
Confidence 55688999999999999999998877666663
No 265
>3nrb_A Formyltetrahydrofolate deformylase; N-terminal ACT domain, structural genomics, joint center for structural genomics, JCSG; HET: MSE FLC; 2.05A {Pseudomonas putida}
Probab=22.94 E-value=38 Score=23.52 Aligned_cols=35 Identities=26% Similarity=0.227 Sum_probs=25.1
Q ss_pred ccceeeeeeee-cc-----eeeeeeccchhHHHHHhhhhhc
Q 040204 34 GSTLHSVRRFR-GG-----MQIFVESSDTIDNVKAKIQDKK 68 (97)
Q Consensus 34 ~sti~l~i~~~-~g-----~~i~v~~~~TV~~lK~~I~~~~ 68 (97)
|.|+|.+-.-. .| ..+.|.+++|.++|.+++.+.+
T Consensus 219 G~Tvh~v~~~lD~GpIi~Q~~v~i~~~dt~~~L~~r~~~~e 259 (287)
T 3nrb_A 219 GATAHFVTADLDEGPIIAQDVEHVSHRDSAEDLVRKGRDIE 259 (287)
T ss_dssp EEEEEECCSSSSCCCEEEEEEEECCTTCCHHHHHHHHHHHH
T ss_pred EEEEEEECCCCcCCCEEEEEEEecCCCCCHHHHHHHHHHHH
Confidence 77888776533 33 1245589999999999998765
No 266
>2zjd_A Microtubule-associated proteins 1A/1B light chain 3B precursor; autophagy, LC3, microtubule-associated protein 1 light chain 3, cytoplasm, cytoplasmic vesicle, lipoprotein; 1.56A {Homo sapiens} SCOP: d.15.1.3 PDB: 2z0e_B 2zzp_B 2z0d_B 1ugm_A 1v49_A 2k6q_A 3eci_A
Probab=21.32 E-value=1.5e+02 Score=18.16 Aligned_cols=34 Identities=9% Similarity=-0.009 Sum_probs=28.3
Q ss_pred eeeeccchhHHHHHhhhhhcCCCCCceEEE-ECeE
Q 040204 49 IFVESSDTIDNVKAKIQDKKGTPPDQQRQI-FWFV 82 (97)
Q Consensus 49 i~v~~~~TV~~lK~~I~~~~gip~~~q~Li-f~G~ 82 (97)
..|..+.||+++..-|+.+-++++++--.+ |-+.
T Consensus 57 flVp~~~tv~qf~~~iRkrL~l~~~~alFl~~vn~ 91 (130)
T 2zjd_A 57 FLVPDHVNMSELIKIIRRRLQLNANQAFFLLVNGH 91 (130)
T ss_dssp EEEETTCBHHHHHHHHHHHHTCCTTCCEEEEETTT
T ss_pred EEcCCCCcHHHHHHHHHHHhCCCCCceEEEEEECC
Confidence 456889999999999999999999876666 6654
No 267
>3tca_A Amyloid beta A4 precursor protein-binding family 1-interacting protein; RA domain, RBD, PH domain; 2.35A {Mus musculus}
Probab=21.14 E-value=1.3e+02 Score=19.79 Aligned_cols=33 Identities=9% Similarity=0.182 Sum_probs=25.9
Q ss_pred eeeeeeccchhHHHHHhhhhhcCCCCCceEEEE
Q 040204 47 MQIFVESSDTIDNVKAKIQDKKGTPPDQQRQIF 79 (97)
Q Consensus 47 ~~i~v~~~~TV~~lK~~I~~~~gip~~~q~Lif 79 (97)
..+.|+++.|+.+|-+.+.++.+++.+...-+|
T Consensus 47 k~i~v~~~~ta~ev~~~L~~k~~~~~~~~~~l~ 79 (291)
T 3tca_A 47 KSLMVDERQLARDVLDNLFEKTHCDCNVDWCLY 79 (291)
T ss_dssp EEEEEETTCBHHHHHHHHHHHHCCCCCTTEEEE
T ss_pred EEEEeCCCCcHHHHHHHHHHHhCCCCCCCeEEE
Confidence 457889999999999999999988765444333
No 268
>3o1l_A Formyltetrahydrofolate deformylase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 2.20A {Pseudomonas syringae PV}
Probab=20.59 E-value=42 Score=23.54 Aligned_cols=35 Identities=29% Similarity=0.286 Sum_probs=24.6
Q ss_pred ccceeeeeeee-cc-----eeeeeeccchhHHHHHhhhhhc
Q 040204 34 GSTLHSVRRFR-GG-----MQIFVESSDTIDNVKAKIQDKK 68 (97)
Q Consensus 34 ~sti~l~i~~~-~g-----~~i~v~~~~TV~~lK~~I~~~~ 68 (97)
|.|+|.+-.-. .| ..+.|.+++|.++|.+++.+.+
T Consensus 235 G~TvH~v~~~lD~GpII~Q~~v~I~~~dt~~~L~~r~~~~e 275 (302)
T 3o1l_A 235 GATCHYVTEELDAGPIIEQDVVRVSHRDSIENMVRFGRDVE 275 (302)
T ss_dssp EEEEEECCSSTTCSCEEEEEEEECCTTCCHHHHHHHHHHHH
T ss_pred EEEEEEECCCCcCCCeEEEEEEecCCCCCHHHHHHHHHHHH
Confidence 66777766433 23 1244589999999999998765
No 269
>3hk0_A Growth factor receptor-bound protein 10; GRB10, RA, PH, RAS-associating, pleckstrin-homology, adapter phosphoprotein, SH2 domain; 2.60A {Homo sapiens}
Probab=20.41 E-value=97 Score=21.12 Aligned_cols=34 Identities=9% Similarity=-0.022 Sum_probs=21.1
Q ss_pred eeeeeeccchhHHHHHhhhhhcCCCCCceEEEEC
Q 040204 47 MQIFVESSDTIDNVKAKIQDKKGTPPDQQRQIFW 80 (97)
Q Consensus 47 ~~i~v~~~~TV~~lK~~I~~~~gip~~~q~Lif~ 80 (97)
..|.|+++.|+++|-..+.++.+++.+.-.-+|.
T Consensus 21 ~~l~V~~~mta~ev~~~l~~k~~~~~~~~W~l~E 54 (256)
T 3hk0_A 21 KVVEILADMTARDLCQLLVYKSHSVDDNSWTLVE 54 (256)
T ss_dssp EEEEECTTCBHHHHHHHHHCCC-------EEEEE
T ss_pred EEEEECCCCCHHHHHHHHHHhcCCCCCCCEEEEE
Confidence 5678899999999998888877665444444443
Done!