BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 040206
(347 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
pdb|3RGZ|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
Length = 768
Score = 105 bits (263), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 96/284 (33%), Positives = 141/284 (49%), Gaps = 22/284 (7%)
Query: 23 HQLEWLDLSKNQIRGR-IPSWMWDIGVHTLQFLILSQNVLTS-IDHLPWKNLQYLTLDSN 80
+ LE LDLS N I G + W+ G L+ L +S N ++ +D NL++L + SN
Sbjct: 151 NSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDVSRCVNLEFLDVSSN 210
Query: 81 LLQGSLPDLP--PHMVQLLISNNSLTGEIPSSFCNLSSIQYLNLSNNSLSGQIPQCLGNS 138
+P L + L IS N L+G+ + + ++ LN+S+N G IP L
Sbjct: 211 NFSTGIPFLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPP-LPLK 269
Query: 139 TLETLDLGMNNFQGSIPQTNAKGCN-LTSLRLSGNHLEGPLPPSLINCVNLQFLDVGNNN 197
+L+ L L N F G IP + C+ LT L LSGNH G +PP +C L+ L + +NN
Sbjct: 270 SLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNN 329
Query: 198 LSGPIP-ECLGNSTRLSFLDVGNNSLSGPIPECLAN--STLEILDMRMNKFSGSL----- 249
SG +P + L L LD+ N SG +PE L N ++L LD+ N FSG +
Sbjct: 330 FSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLC 389
Query: 250 --PQNICKKLCF------GPLPPSLVNCQYLEVLDVGNNQIDDT 285
P+N ++L G +PP+L NC L L + N + T
Sbjct: 390 QNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGT 433
Score = 105 bits (263), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 92/251 (36%), Positives = 128/251 (50%), Gaps = 30/251 (11%)
Query: 14 EFP-DILRTQHQLEWLDLSKNQIRGRIPSWMWDIGVHTLQFLILSQNVLTSIDHLPWKNL 72
E P D L L+ LDLS N+ G +P + + LS ++LT
Sbjct: 333 ELPMDTLLKMRGLKVLDLSFNEFSGELPESLTN----------LSASLLT---------- 372
Query: 73 QYLTLDSNLLQGS-LPDL---PPHMVQ-LLISNNSLTGEIPSSFCNLSSIQYLNLSNNSL 127
L L SN G LP+L P + +Q L + NN TG+IP + N S + L+LS N L
Sbjct: 373 --LDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYL 430
Query: 128 SGQIPQCLGN-STLETLDLGMNNFQGSIPQTNAKGCNLTSLRLSGNHLEGPLPPSLINCV 186
SG IP LG+ S L L L +N +G IPQ L +L L N L G +P L NC
Sbjct: 431 SGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCT 490
Query: 187 NLQFLDVGNNNLSGPIPECLGNSTRLSFLDVGNNSLSGPIPECLAN-STLEILDMRMNKF 245
NL ++ + NN L+G IP+ +G L+ L + NNS SG IP L + +L LD+ N F
Sbjct: 491 NLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLF 550
Query: 246 SGSLPQNICKK 256
+G++P + K+
Sbjct: 551 NGTIPAAMFKQ 561
Score = 91.7 bits (226), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 97/301 (32%), Positives = 140/301 (46%), Gaps = 28/301 (9%)
Query: 6 QVKTCNISEFPDILRTQHQLEWLDLSKNQIRGRIPSWMWDIGVHTLQFLILSQNVLTS-I 64
V + N S L L+ LD+S N++ G + L+ L +S N I
Sbjct: 206 DVSSNNFSTGIPFLGDCSALQHLDISGNKLSGDFSRAIST--CTELKLLNISSNQFVGPI 263
Query: 65 DHLPWKNLQYLTLDSNLLQGSLPDLPPHMVQLL----ISNNSLTGEIPSSFCNLSSIQYL 120
LP K+LQYL+L N G +PD L +S N G +P F + S ++ L
Sbjct: 264 PPLPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESL 323
Query: 121 NLSNNSLSGQIPQ--CLGNSTLETLDLGMNNFQGSIPQTNAK-GCNLTSLRLSGNHLEGP 177
LS+N+ SG++P L L+ LDL N F G +P++ +L +L LS N+ GP
Sbjct: 324 ALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGP 383
Query: 178 LPPSLINCVN----LQFLDVGNNNLSGPIPECLGNSTRLSFLDVGNNSLSGPIPECLAN- 232
+ P+L C N LQ L + NN +G IP L N + L L + N LSG IP L +
Sbjct: 384 ILPNL--CQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSL 441
Query: 233 STLEILDMRMNKFSGSLPQNI--CKKL---------CFGPLPPSLVNCQYLEVLDVGNNQ 281
S L L + +N G +PQ + K L G +P L NC L + + NN+
Sbjct: 442 SKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNR 501
Query: 282 I 282
+
Sbjct: 502 L 502
Score = 72.8 bits (177), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 82/292 (28%), Positives = 131/292 (44%), Gaps = 60/292 (20%)
Query: 16 PDILRTQHQLEWLDLSKNQIRGRIPSWMWDIGVHTLQFLILSQNVLTSIDHLP-----WK 70
P L + +L L L N + G IP + + V TL+ LIL N LT +P
Sbjct: 435 PSSLGSLSKLRDLKLWLNMLEGEIPQEL--MYVKTLETLILDFNDLTG--EIPSGLSNCT 490
Query: 71 NLQYLTLDSNLLQGSLPDLPPHMVQLLI---SNNSLTGEIPSSFCNLSSIQYLNLSNNSL 127
NL +++L +N L G +P + L I SNNS +G IP+ + S+ +L+L+ N
Sbjct: 491 NLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLF 550
Query: 128 SGQIPQCL-------------GNSTLETLDLGMNN----------FQGSIPQ-----TNA 159
+G IP + G + + GM FQG + +
Sbjct: 551 NGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTR 610
Query: 160 KGCNLTS-------------------LRLSGNHLEGPLPPSLINCVNLQFLDVGNNNLSG 200
CN+TS L +S N L G +P + + L L++G+N++SG
Sbjct: 611 NPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISG 670
Query: 201 PIPECLGNSTRLSFLDVGNNSLSGPIPECLANST-LEILDMRMNKFSGSLPQ 251
IP+ +G+ L+ LD+ +N L G IP+ ++ T L +D+ N SG +P+
Sbjct: 671 SIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPE 722
Score = 72.0 bits (175), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 73/261 (27%), Positives = 117/261 (44%), Gaps = 37/261 (14%)
Query: 1 KTIKTQVKTCN--ISEFPDILRTQHQLEWLDLSKNQIRGRIPSWMWDIGVHTLQFLILSQ 58
KT++T + N E P L L W+ LS N++ G IP W+ + L L LS
Sbjct: 466 KTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRL--ENLAILKLSN 523
Query: 59 NVLTSIDHLPW-----KNLQYLTLDSNLLQGSLP--------DLPPHMVQ----LLISNN 101
N + ++P ++L +L L++NL G++P + + + + I N+
Sbjct: 524 NSFSG--NIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKND 581
Query: 102 SLTGE------------IPSSFCN-LSSIQYLNLSNNSLSGQI-PQCLGNSTLETLDLGM 147
+ E I S N LS+ N+++ G P N ++ LD+
Sbjct: 582 GMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSY 641
Query: 148 NNFQGSIPQTNAKGCNLTSLRLSGNHLEGPLPPSLINCVNLQFLDVGNNNLSGPIPECLG 207
N G IP+ L L L N + G +P + + L LD+ +N L G IP+ +
Sbjct: 642 NMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMS 701
Query: 208 NSTRLSFLDVGNNSLSGPIPE 228
T L+ +D+ NN+LSGPIPE
Sbjct: 702 ALTMLTEIDLSNNNLSGPIPE 722
Score = 67.8 bits (164), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 62/212 (29%), Positives = 98/212 (46%), Gaps = 41/212 (19%)
Query: 93 MVQLLISNNSLTGEIPS--SFCNLSSIQYLNLSNNSLS--GQIPQCLGNSTLETLDLGMN 148
+ L +S NSL+G + + S + S +++LN+S+N+L G++ L ++LE LDL N
Sbjct: 102 LTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSAN 161
Query: 149 NFQGS--IPQTNAKGCN-LTSLRLSGNHLEGPLP---------------------PSLIN 184
+ G+ + + GC L L +SGN + G + P L +
Sbjct: 162 SISGANVVGWVLSDGCGELKHLAISGNKISGDVDVSRCVNLEFLDVSSNNFSTGIPFLGD 221
Query: 185 CVNLQFLDVGNNNLSGPIPECLGNSTRLSFLDVGNNSLSGPIPECLANSTLEILDMRMNK 244
C LQ LD+ N LSG + T L L++ +N GPIP L +L+ L + NK
Sbjct: 222 CSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPP-LPLKSLQYLSLAENK 280
Query: 245 FSGSLPQ---NICKKLC---------FGPLPP 264
F+G +P C L +G +PP
Sbjct: 281 FTGEIPDFLSGACDTLTGLDLSGNHFYGAVPP 312
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 56/210 (26%), Positives = 86/210 (40%), Gaps = 70/210 (33%)
Query: 122 LSNNSLSGQIPQCLGNSTLETLDLGMNNFQGSI------------------------PQT 157
LSN+ ++G + +++L +LDL N+ G + P
Sbjct: 84 LSNSHINGSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGK 143
Query: 158 NAKGCNLTSLR------------------------------LSGNHLEGPLPPSLINCVN 187
+ G L SL +SGN + G + S CVN
Sbjct: 144 VSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDVS--RCVN 201
Query: 188 LQFLDVGNNNLSGPIPECLGNSTRLSFLDVGNNSLSGPIPECLANST-LEILDMRMNKFS 246
L+FLDV +NN S IP LG+ + L LD+ N LSG ++ T L++L++ N+F
Sbjct: 202 LEFLDVSSNNFSTGIP-FLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFV 260
Query: 247 GSLPQNICKKLCFGPLPPSLVNCQYLEVLD 276
G +P PLP L + QYL + +
Sbjct: 261 GPIP----------PLP--LKSLQYLSLAE 278
>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1
Ectodomain
pdb|3RJ0|A Chain A, Plant Steroid Receptor Bri1 Ectodomain In Complex With
Brassinolide
Length = 772
Score = 105 bits (263), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 92/251 (36%), Positives = 128/251 (50%), Gaps = 30/251 (11%)
Query: 14 EFP-DILRTQHQLEWLDLSKNQIRGRIPSWMWDIGVHTLQFLILSQNVLTSIDHLPWKNL 72
E P D L L+ LDLS N+ G +P + + LS ++LT
Sbjct: 330 ELPMDTLLKMRGLKVLDLSFNEFSGELPESLTN----------LSASLLT---------- 369
Query: 73 QYLTLDSNLLQGS-LPDL---PPHMVQ-LLISNNSLTGEIPSSFCNLSSIQYLNLSNNSL 127
L L SN G LP+L P + +Q L + NN TG+IP + N S + L+LS N L
Sbjct: 370 --LDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYL 427
Query: 128 SGQIPQCLGN-STLETLDLGMNNFQGSIPQTNAKGCNLTSLRLSGNHLEGPLPPSLINCV 186
SG IP LG+ S L L L +N +G IPQ L +L L N L G +P L NC
Sbjct: 428 SGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCT 487
Query: 187 NLQFLDVGNNNLSGPIPECLGNSTRLSFLDVGNNSLSGPIPECLAN-STLEILDMRMNKF 245
NL ++ + NN L+G IP+ +G L+ L + NNS SG IP L + +L LD+ N F
Sbjct: 488 NLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLF 547
Query: 246 SGSLPQNICKK 256
+G++P + K+
Sbjct: 548 NGTIPAAMFKQ 558
Score = 105 bits (263), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 96/284 (33%), Positives = 141/284 (49%), Gaps = 22/284 (7%)
Query: 23 HQLEWLDLSKNQIRGR-IPSWMWDIGVHTLQFLILSQNVLTS-IDHLPWKNLQYLTLDSN 80
+ LE LDLS N I G + W+ G L+ L +S N ++ +D NL++L + SN
Sbjct: 148 NSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDVSRCVNLEFLDVSSN 207
Query: 81 LLQGSLPDLP--PHMVQLLISNNSLTGEIPSSFCNLSSIQYLNLSNNSLSGQIPQCLGNS 138
+P L + L IS N L+G+ + + ++ LN+S+N G IP L
Sbjct: 208 NFSTGIPFLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPP-LPLK 266
Query: 139 TLETLDLGMNNFQGSIPQTNAKGCN-LTSLRLSGNHLEGPLPPSLINCVNLQFLDVGNNN 197
+L+ L L N F G IP + C+ LT L LSGNH G +PP +C L+ L + +NN
Sbjct: 267 SLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNN 326
Query: 198 LSGPIP-ECLGNSTRLSFLDVGNNSLSGPIPECLAN--STLEILDMRMNKFSGSL----- 249
SG +P + L L LD+ N SG +PE L N ++L LD+ N FSG +
Sbjct: 327 FSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLC 386
Query: 250 --PQNICKKLCF------GPLPPSLVNCQYLEVLDVGNNQIDDT 285
P+N ++L G +PP+L NC L L + N + T
Sbjct: 387 QNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGT 430
Score = 91.7 bits (226), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 97/301 (32%), Positives = 140/301 (46%), Gaps = 28/301 (9%)
Query: 6 QVKTCNISEFPDILRTQHQLEWLDLSKNQIRGRIPSWMWDIGVHTLQFLILSQNVLTS-I 64
V + N S L L+ LD+S N++ G + L+ L +S N I
Sbjct: 203 DVSSNNFSTGIPFLGDCSALQHLDISGNKLSGDFSRAIST--CTELKLLNISSNQFVGPI 260
Query: 65 DHLPWKNLQYLTLDSNLLQGSLPDLPPHMVQLL----ISNNSLTGEIPSSFCNLSSIQYL 120
LP K+LQYL+L N G +PD L +S N G +P F + S ++ L
Sbjct: 261 PPLPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESL 320
Query: 121 NLSNNSLSGQIPQ--CLGNSTLETLDLGMNNFQGSIPQTNAK-GCNLTSLRLSGNHLEGP 177
LS+N+ SG++P L L+ LDL N F G +P++ +L +L LS N+ GP
Sbjct: 321 ALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGP 380
Query: 178 LPPSLINCVN----LQFLDVGNNNLSGPIPECLGNSTRLSFLDVGNNSLSGPIPECLAN- 232
+ P+L C N LQ L + NN +G IP L N + L L + N LSG IP L +
Sbjct: 381 ILPNL--CQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSL 438
Query: 233 STLEILDMRMNKFSGSLPQNI--CKKL---------CFGPLPPSLVNCQYLEVLDVGNNQ 281
S L L + +N G +PQ + K L G +P L NC L + + NN+
Sbjct: 439 SKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNR 498
Query: 282 I 282
+
Sbjct: 499 L 499
Score = 72.8 bits (177), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 82/292 (28%), Positives = 131/292 (44%), Gaps = 60/292 (20%)
Query: 16 PDILRTQHQLEWLDLSKNQIRGRIPSWMWDIGVHTLQFLILSQNVLTSIDHLP-----WK 70
P L + +L L L N + G IP + + V TL+ LIL N LT +P
Sbjct: 432 PSSLGSLSKLRDLKLWLNMLEGEIPQEL--MYVKTLETLILDFNDLTG--EIPSGLSNCT 487
Query: 71 NLQYLTLDSNLLQGSLPDLPPHMVQLLI---SNNSLTGEIPSSFCNLSSIQYLNLSNNSL 127
NL +++L +N L G +P + L I SNNS +G IP+ + S+ +L+L+ N
Sbjct: 488 NLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLF 547
Query: 128 SGQIPQCL-------------GNSTLETLDLGMNN----------FQGSIPQ-----TNA 159
+G IP + G + + GM FQG + +
Sbjct: 548 NGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTR 607
Query: 160 KGCNLTS-------------------LRLSGNHLEGPLPPSLINCVNLQFLDVGNNNLSG 200
CN+TS L +S N L G +P + + L L++G+N++SG
Sbjct: 608 NPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISG 667
Query: 201 PIPECLGNSTRLSFLDVGNNSLSGPIPECLANST-LEILDMRMNKFSGSLPQ 251
IP+ +G+ L+ LD+ +N L G IP+ ++ T L +D+ N SG +P+
Sbjct: 668 SIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPE 719
Score = 72.0 bits (175), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 73/261 (27%), Positives = 117/261 (44%), Gaps = 37/261 (14%)
Query: 1 KTIKTQVKTCN--ISEFPDILRTQHQLEWLDLSKNQIRGRIPSWMWDIGVHTLQFLILSQ 58
KT++T + N E P L L W+ LS N++ G IP W+ + L L LS
Sbjct: 463 KTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRL--ENLAILKLSN 520
Query: 59 NVLTSIDHLPW-----KNLQYLTLDSNLLQGSLP--------DLPPHMVQ----LLISNN 101
N + ++P ++L +L L++NL G++P + + + + I N+
Sbjct: 521 NSFSG--NIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKND 578
Query: 102 SLTGE------------IPSSFCN-LSSIQYLNLSNNSLSGQI-PQCLGNSTLETLDLGM 147
+ E I S N LS+ N+++ G P N ++ LD+
Sbjct: 579 GMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSY 638
Query: 148 NNFQGSIPQTNAKGCNLTSLRLSGNHLEGPLPPSLINCVNLQFLDVGNNNLSGPIPECLG 207
N G IP+ L L L N + G +P + + L LD+ +N L G IP+ +
Sbjct: 639 NMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMS 698
Query: 208 NSTRLSFLDVGNNSLSGPIPE 228
T L+ +D+ NN+LSGPIPE
Sbjct: 699 ALTMLTEIDLSNNNLSGPIPE 719
Score = 68.2 bits (165), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 62/212 (29%), Positives = 98/212 (46%), Gaps = 41/212 (19%)
Query: 93 MVQLLISNNSLTGEIPS--SFCNLSSIQYLNLSNNSLS--GQIPQCLGNSTLETLDLGMN 148
+ L +S NSL+G + + S + S +++LN+S+N+L G++ L ++LE LDL N
Sbjct: 99 LTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSAN 158
Query: 149 NFQGS--IPQTNAKGCN-LTSLRLSGNHLEGPLP---------------------PSLIN 184
+ G+ + + GC L L +SGN + G + P L +
Sbjct: 159 SISGANVVGWVLSDGCGELKHLAISGNKISGDVDVSRCVNLEFLDVSSNNFSTGIPFLGD 218
Query: 185 CVNLQFLDVGNNNLSGPIPECLGNSTRLSFLDVGNNSLSGPIPECLANSTLEILDMRMNK 244
C LQ LD+ N LSG + T L L++ +N GPIP L +L+ L + NK
Sbjct: 219 CSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPP-LPLKSLQYLSLAENK 277
Query: 245 FSGSLPQ---NICKKLC---------FGPLPP 264
F+G +P C L +G +PP
Sbjct: 278 FTGEIPDFLSGACDTLTGLDLSGNHFYGAVPP 309
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 56/210 (26%), Positives = 86/210 (40%), Gaps = 70/210 (33%)
Query: 122 LSNNSLSGQIPQCLGNSTLETLDLGMNNFQGSI------------------------PQT 157
LSN+ ++G + +++L +LDL N+ G + P
Sbjct: 81 LSNSHINGSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGK 140
Query: 158 NAKGCNLTSLR------------------------------LSGNHLEGPLPPSLINCVN 187
+ G L SL +SGN + G + S CVN
Sbjct: 141 VSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDVS--RCVN 198
Query: 188 LQFLDVGNNNLSGPIPECLGNSTRLSFLDVGNNSLSGPIPECLANST-LEILDMRMNKFS 246
L+FLDV +NN S IP LG+ + L LD+ N LSG ++ T L++L++ N+F
Sbjct: 199 LEFLDVSSNNFSTGIP-FLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFV 257
Query: 247 GSLPQNICKKLCFGPLPPSLVNCQYLEVLD 276
G +P PLP L + QYL + +
Sbjct: 258 GPIP----------PLP--LKSLQYLSLAE 275
>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase
Inhibiting Protein), A Leucine Rich Repeat Protein
Involved In Plant Defense
Length = 313
Score = 74.3 bits (181), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 57/199 (28%), Positives = 101/199 (50%), Gaps = 7/199 (3%)
Query: 62 TSIDHLPWKNLQYLTLDSNLLQGSLPDLPPHMVQL---LISNNSLTGEIPSSFCNLSSIQ 118
+S+ +LP+ N Y+ +NL+ G +P + QL I++ +++G IP + ++
Sbjct: 70 SSLANLPYLNFLYIGGINNLV-GPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLV 128
Query: 119 YLNLSNNSLSGQIPQCLGN-STLETLDLGMNNFQGSIPQTNAKGCNL-TSLRLSGNHLEG 176
L+ S N+LSG +P + + L + N G+IP + L TS+ +S N L G
Sbjct: 129 TLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTG 188
Query: 177 PLPPSLINCVNLQFLDVGNNNLSGPIPECLGNSTRLSFLDVGNNSLSGPIPECLANSTLE 236
+PP+ N +NL F+D+ N L G G+ + + NSL+ + + + L
Sbjct: 189 KIPPTFAN-LNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLN 247
Query: 237 ILDMRMNKFSGSLPQNICK 255
LD+R N+ G+LPQ + +
Sbjct: 248 GLDLRNNRIYGTLPQGLTQ 266
Score = 64.3 bits (155), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 75/261 (28%), Positives = 110/261 (42%), Gaps = 49/261 (18%)
Query: 12 ISEFPDILRTQHQLEWLDLSKNQIRGRIPSWMWDIGVHTLQFLILSQNVLT-----SIDH 66
+ P + QL +L ++ + G IP ++ I TL L S N L+ SI
Sbjct: 90 VGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQI--KTLVTLDFSYNALSGTLPPSISS 147
Query: 67 LPWKNLQYLTLDSNLLQGSLPD----LPPHMVQLLISNNSLTGEIPSSFCNLSSIQYLNL 122
LP NL +T D N + G++PD + IS N LTG+IP +F NL+ + +++L
Sbjct: 148 LP--NLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDL 204
Query: 123 SNNSLSGQIPQCLGNSTLETLDLGMNNFQGSIPQTNAKGCNLTSLRLSGNHLEGPLPPSL 182
S N L G G+ N Q N+ +L + LS N
Sbjct: 205 SRNMLEGDASVLFGSD---------KNTQKIHLAKNSLAFDLGKVGLSKN---------- 245
Query: 183 INCVNLQFLDVGNNNLSGPIPECLGNSTRLSFLDVGNNSLSGPIPECLANSTLEILDMRM 242
L LD+ NN + G +P+ L L L+V N+L G IP+ L+ D+
Sbjct: 246 -----LNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ---GGNLQRFDVS- 296
Query: 243 NKFSGSLPQNICKKLCFGPLP 263
+ N C LC PLP
Sbjct: 297 -----AYANNKC--LCGSPLP 310
Score = 61.2 bits (147), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 50/133 (37%), Positives = 71/133 (53%), Gaps = 9/133 (6%)
Query: 130 QIPQCLGNST-----LETLDLGMNNFQGSIPQTNAKGCNLTSLRLSGNHLEG--PLPPSL 182
QI + LGN T L T D + G + T+ + + +L LSG +L P+P SL
Sbjct: 13 QIKKDLGNPTTLSSWLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSL 72
Query: 183 INCVNLQFLDVGN-NNLSGPIPECLGNSTRLSFLDVGNNSLSGPIPECLAN-STLEILDM 240
N L FL +G NNL GPIP + T+L +L + + ++SG IP+ L+ TL LD
Sbjct: 73 ANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDF 132
Query: 241 RMNKFSGSLPQNI 253
N SG+LP +I
Sbjct: 133 SYNALSGTLPPSI 145
Score = 52.0 bits (123), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 41/144 (28%), Positives = 69/144 (47%), Gaps = 15/144 (10%)
Query: 154 IPQTNAKGCNLTSLRLSG-NHLEGPLPPSLINCVNLQFLDVGNNNLSGPIPECLGNSTRL 212
IP + A L L + G N+L GP+PP++ L +L + + N+SG IP+ L L
Sbjct: 68 IPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTL 127
Query: 213 SFLDVGNNSLSGPIPECLAN-STLEILDMRMNKFSGSLPQN------------ICKKLCF 259
LD N+LSG +P +++ L + N+ SG++P + I +
Sbjct: 128 VTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLT 187
Query: 260 GPLPPSLVNCQYLEVLDVGNNQID 283
G +PP+ N L +D+ N ++
Sbjct: 188 GKIPPTFANLN-LAFVDLSRNMLE 210
>pdb|1G9U|A Chain A, Crystal Structure Of Yopm-leucine Rich Effector Protein
From Yersinia Pestis
pdb|1JL5|A Chain A, Novel Molecular Architecture Of Yopm-A Leucine-Rich
Effector Protein From Yersinia Pestis
Length = 454
Score = 42.0 bits (97), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 80/265 (30%), Positives = 117/265 (44%), Gaps = 77/265 (29%)
Query: 80 NLLQGSLPDLPPHMVQLLISNNSLTG--EIPSSFCNL--------------SSIQYLNLS 123
NL SLP+LPPH+ L+ S NSLT E+P S +L ++YL +S
Sbjct: 80 NLGLSSLPELPPHLESLVASCNSLTELPELPQSLKSLLVDNNNLKALSDLPPLLEYLGVS 139
Query: 124 NNSLSGQIPQCLGNSTLETLDLGMNNFQG--SIP---QTNAKGCN-------------LT 165
NN L ++P+ +S L+ +D+ N+ + +P + A G N LT
Sbjct: 140 NNQLE-KLPELQNSSFLKIIDVDNNSLKKLPDLPPSLEFIAAGNNQLEELPELQNLPFLT 198
Query: 166 SLRLSGNHLEG--PLPPSLINCV-------------NLQFLDV--GNNNLSGPIPECLGN 208
++ N L+ LP SL + V NL FL +NNL +P+
Sbjct: 199 AIYADNNSLKKLPDLPLSLESIVAGNNILEELPELQNLPFLTTIYADNNLLKTLPDL--- 255
Query: 209 STRLSFLDVGNNSLSGPIPECLANSTLEILDMRMNKFSG--SLPQNI---------CKKL 257
L L+V +N L+ +PE +L LD+ N FSG LP N+ + L
Sbjct: 256 PPSLEALNVRDNYLTD-LPEL--PQSLTFLDVSENIFSGLSELPPNLYYLNASSNEIRSL 312
Query: 258 CFGPLPPSLVNCQYLEVLDVGNNQI 282
C LPPS LE L+V NN++
Sbjct: 313 CD--LPPS------LEELNVSNNKL 329
Score = 37.7 bits (86), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 44/145 (30%), Positives = 69/145 (47%), Gaps = 32/145 (22%)
Query: 49 HTLQFLILSQNVLTSIDHLPWKNLQYLTLDSNLLQGSLPDLPPHMVQLLISNNSLTGEIP 108
+L FL +S+N+ + + LP NL YL SN ++ SL DLPP + +L +SNN L E+P
Sbjct: 277 QSLTFLDVSENIFSGLSELP-PNLYYLNASSNEIR-SLCDLPPSLEELNVSNNKLI-ELP 333
Query: 109 ----------SSFCNLSSI-------QYLNLSNNSLSG--QIPQCLGNSTLETLDLGMNN 149
+SF +L+ + + L++ N L IP+ + DL MN+
Sbjct: 334 ALPPRLERLIASFNHLAEVPELPQNLKQLHVEYNPLREFPDIPESVE-------DLRMNS 386
Query: 150 FQGSIPQTNAKGCNLTSLRLSGNHL 174
+P+ NL L + N L
Sbjct: 387 HLAEVPEL---PQNLKQLHVETNPL 408
>pdb|3G06|A Chain A, The Salmonella Virulence Effector Ssph2 Functions As A
Novel E3 Ligase
Length = 622
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 36/89 (40%), Positives = 48/89 (53%), Gaps = 3/89 (3%)
Query: 51 LQFLILSQNVLTSIDHLPWKNLQYLTLDSNLLQGSLPDLPPHMVQLLISNNSLTGEIPSS 110
L+ LI+S N LTS+ LP L+ L + N L SLP LP ++ L + N LT +P S
Sbjct: 223 LKELIVSGNRLTSLPVLP-SELKELMVSGNRLT-SLPMLPSGLLSLSVYRNQLT-RLPES 279
Query: 111 FCNLSSIQYLNLSNNSLSGQIPQCLGNST 139
+LSS +NL N LS + Q L T
Sbjct: 280 LIHLSSETTVNLEGNPLSERTLQALREIT 308
Score = 32.7 bits (73), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 26/63 (41%), Positives = 36/63 (57%), Gaps = 4/63 (6%)
Query: 54 LILSQNVLTSIDHLPWKNLQYLTLDSNLLQGSLPDLPPHMVQLLISNNSLTG--EIPSSF 111
L++ N LTS+ LP L+ L + N L SLP LPP +++L I +N LT +PS
Sbjct: 66 LVIPDNNLTSLPALP-PELRTLEVSGNQLT-SLPVLPPGLLELSIFSNPLTHLPALPSGL 123
Query: 112 CNL 114
C L
Sbjct: 124 CKL 126
Score = 29.3 bits (64), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 52/143 (36%), Positives = 68/143 (47%), Gaps = 21/143 (14%)
Query: 59 NVLTSIDHLPWKNLQYLTLDSNLLQGSLPDLPPHMVQLLISNNSLTGEIPSSFCNL-SSI 117
N LTS+ LP LQ L++ N L SLP LP + +L NN LT S L S +
Sbjct: 131 NQLTSLPVLP-PGLQELSVSDNQL-ASLPALPSELCKLWAYNNQLT-----SLPMLPSGL 183
Query: 118 QYLNLSNNSLSGQIPQCLGNSTLETLDLGMNNFQGSIPQTNAKGCNLTSLRLSGNHLEG- 176
Q L++S+N L+ +P S L L NN S+P A L L +SGN L
Sbjct: 184 QELSVSDNQLAS-LPTL--PSELYKL-WAYNNRLTSLP---ALPSGLKELIVSGNRLTSL 236
Query: 177 PLPPSLINCVNLQFLDVGNNNLS 199
P+ PS L+ L V N L+
Sbjct: 237 PVLPS-----ELKELMVSGNRLT 254
>pdb|3FXI|A Chain A, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
pdb|3FXI|B Chain B, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
Length = 605
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 66/232 (28%), Positives = 105/232 (45%), Gaps = 34/232 (14%)
Query: 25 LEWLDLSKNQIRGRIPSWMWDIGVHTLQFLILSQN--VLTSIDHLPWKNLQYLTLD-SNL 81
LE+LDLS+N + + D G +L++L LS N + S + L + L++L SNL
Sbjct: 349 LEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNL 408
Query: 82 LQGSLPDLPPHMVQLLISNNSLTGEIPSSFCNLSSIQYLNLSNNSLSGQIPQCL-GNSTL 140
Q S E S F +L ++ YL++S+ G S+L
Sbjct: 409 KQMS--------------------EF-SVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSL 447
Query: 141 ETLDLGMNNFQGS-IPQTNAKGCNLTSLRLSGNHLEGPLPPSLINCVNLQFLDVGNNNLS 199
E L + N+FQ + +P + NLT L LS LE P + + +LQ L++ +NN
Sbjct: 448 EVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFF 507
Query: 200 G--PIP-ECLGNSTRLSFLDVGNNSLSGPIPECLAN--STLEILDMRMNKFS 246
P +CL + L LD N + + L + S+L L++ N F+
Sbjct: 508 SLDTFPYKCLNS---LQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFA 556
Score = 32.3 bits (72), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 31/113 (27%), Positives = 47/113 (41%), Gaps = 19/113 (16%)
Query: 16 PDILRTQHQLEWLDLSKNQIRGRIPSWMWDIGVHTLQFLILSQNVLTSIDHLPWKNLQYL 75
PDI L +LDLS+ Q+ P+ + +LQ L +S N S+D P+K L
Sbjct: 463 PDIFTELRNLTFLDLSQCQLEQLSPTAFNSLS--SLQVLNMSHNNFFSLDTFPYKCL--- 517
Query: 76 TLDSNLLQGSLPDLPPHMVQLLISNNSLTGEIPSSFCNLSSIQYLNLSNNSLS 128
SL L + ++ S P SS+ +LNL+ N +
Sbjct: 518 --------NSLQVLDYSLNHIMTSKKQELQHFP------SSLAFLNLTQNDFA 556
>pdb|4B8C|D Chain D, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|J Chain J, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|K Chain K, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|L Chain L, Nuclease Module Of The Yeast Ccr4-Not Complex
Length = 727
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/105 (30%), Positives = 54/105 (51%), Gaps = 8/105 (7%)
Query: 71 NLQYLTLDSNLLQGSLPDLPPHMVQLLISNNSLTGEIPSSFCNLSSIQYLNLSNNSLSGQ 130
NLQ + +N+ + + +L ++ NSLT E+P+ NLS+++ L+LS+N L+
Sbjct: 233 NLQIFNISANIFKYDF------LTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLTS- 284
Query: 131 IPQCLGNSTLETLDLGMNNFQGSIPQTNAKGCNLTSLRLSGNHLE 175
+P LG+ +N ++P CNL L + GN LE
Sbjct: 285 LPAELGSCFQLKYFYFFDNMVTTLPWEFGNLCNLQFLGVEGNPLE 329
Score = 32.0 bits (71), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 27/100 (27%), Positives = 47/100 (47%), Gaps = 11/100 (11%)
Query: 124 NNSLSGQIPQCLGNSTLETLDLGMNNFQGSIPQTNAKGCNLTSLRLSGNHLEGPLPPSLI 183
++ Q+ L S L+ ++ N F+ LT L L+GN L LP +
Sbjct: 218 DSKYDDQLWHALDLSNLQIFNISANIFKYDF---------LTRLYLNGNSL-TELPAEIK 267
Query: 184 NCVNLQFLDVGNNNLSGPIPECLGNSTRLSFLDVGNNSLS 223
N NL+ LD+ +N L+ +P LG+ +L + +N ++
Sbjct: 268 NLSNLRVLDLSHNRLTS-LPAELGSCFQLKYFYFFDNMVT 306
>pdb|4G8A|A Chain A, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
pdb|4G8A|B Chain B, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
Length = 635
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 66/232 (28%), Positives = 105/232 (45%), Gaps = 34/232 (14%)
Query: 25 LEWLDLSKNQIRGRIPSWMWDIGVHTLQFLILSQN--VLTSIDHLPWKNLQYLTLD-SNL 81
LE+LDLS+N + + D G +L++L LS N + S + L + L++L SNL
Sbjct: 373 LEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNL 432
Query: 82 LQGSLPDLPPHMVQLLISNNSLTGEIPSSFCNLSSIQYLNLSNNSLSGQIPQCL-GNSTL 140
Q S E S F +L ++ YL++S+ G S+L
Sbjct: 433 KQMS--------------------EF-SVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSL 471
Query: 141 ETLDLGMNNFQGS-IPQTNAKGCNLTSLRLSGNHLEGPLPPSLINCVNLQFLDVGNNNLS 199
E L + N+FQ + +P + NLT L LS LE P + + +LQ L++ +NN
Sbjct: 472 EVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFF 531
Query: 200 G--PIP-ECLGNSTRLSFLDVGNNSLSGPIPECLAN--STLEILDMRMNKFS 246
P +CL + L LD N + + L + S+L L++ N F+
Sbjct: 532 SLDTFPYKCLNS---LQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFA 580
Score = 32.0 bits (71), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 31/113 (27%), Positives = 47/113 (41%), Gaps = 19/113 (16%)
Query: 16 PDILRTQHQLEWLDLSKNQIRGRIPSWMWDIGVHTLQFLILSQNVLTSIDHLPWKNLQYL 75
PDI L +LDLS+ Q+ P+ + +LQ L +S N S+D P+K L
Sbjct: 487 PDIFTELRNLTFLDLSQCQLEQLSPTAFNSLS--SLQVLNMSHNNFFSLDTFPYKCL--- 541
Query: 76 TLDSNLLQGSLPDLPPHMVQLLISNNSLTGEIPSSFCNLSSIQYLNLSNNSLS 128
SL L + ++ S P SS+ +LNL+ N +
Sbjct: 542 --------NSLQVLDYSLNHIMTSKKQELQHFP------SSLAFLNLTQNDFA 580
>pdb|4FMZ|A Chain A, Crystal Structure Of An Internalin (Inlf) From Listeria
Monocytogenes Str. 4b F2365 At 1.91 A Resolution
pdb|4FMZ|B Chain B, Crystal Structure Of An Internalin (Inlf) From Listeria
Monocytogenes Str. 4b F2365 At 1.91 A Resolution
Length = 347
Score = 38.1 bits (87), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 73/278 (26%), Positives = 121/278 (43%), Gaps = 58/278 (20%)
Query: 36 RGRIPSWMWDIGVHTLQFLILSQNVLTSIDHLPW-KNLQYLTLDSNLLQGSLPDLPP--- 91
+ + + + ++ L+++ + SI + + NL+YL L+ N + D+ P
Sbjct: 31 KASVTDVVTQEELESITKLVVAGEKVASIQGIEYLTNLEYLNLNGN----QITDISPLSN 86
Query: 92 --HMVQLLISNNSLTGEIPSSFCNLSSIQYLNLSNNSLSGQIPQCLGNST-LETLDLGMN 148
+ L I N +T S+ NL++++ L L+ +++S P L N T +L+LG N
Sbjct: 87 LVKLTNLYIGTNKITD--ISALQNLTNLRELYLNEDNISDISP--LANLTKXYSLNLGAN 142
Query: 149 -NFQGSIPQTNAKGCN--------------------LTSLRLSGNHLEGPLPPSLINCVN 187
N P +N G N L SL L+ N +E P L + +
Sbjct: 143 HNLSDLSPLSNXTGLNYLTVTESKVKDVTPIANLTDLYSLSLNYNQIEDISP--LASLTS 200
Query: 188 LQFLDVGNNNLSGPIPECLGNSTRLSFLDVGNNSLSGPIPECLAN-STLEILDMRMNKFS 246
L + N ++ P + N TRL+ L +GNN ++ P LAN S L L++ N+ S
Sbjct: 201 LHYFTAYVNQITDITP--VANXTRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQIS 256
Query: 247 GSLPQNICKKLCFGPLPPSLVNCQYLEVLDVGNNQIDD 284
N K L L+ L+VG+NQI D
Sbjct: 257 DI---NAVKDLT------------KLKXLNVGSNQISD 279
>pdb|1W8A|A Chain A, Third Lrr Domain Of Drosophila Slit
Length = 192
Score = 37.7 bits (86), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 30/83 (36%), Positives = 42/83 (50%), Gaps = 1/83 (1%)
Query: 91 PHMVQLLISNNSLTGEIPSSFCNLSSIQYLNLSNNSLSG-QIPQCLGNSTLETLDLGMNN 149
PH+V+L + N LTG P++F S IQ L L N + LG L+TL+L N
Sbjct: 54 PHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQ 113
Query: 150 FQGSIPQTNAKGCNLTSLRLSGN 172
+P + +LTSL L+ N
Sbjct: 114 ISCVMPGSFEHLNSLTSLNLASN 136
>pdb|2OMU|A Chain A, Crystal Structure Of Inla G194s+s Y369s/hec1 Complex
Length = 462
Score = 37.0 bits (84), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 62/201 (30%), Positives = 94/201 (46%), Gaps = 15/201 (7%)
Query: 51 LQFLILSQNVLTSIDHLP-WKNLQYLTLDSNLLQ--GSLPDLPPHMVQLLISNNSLTGEI 107
L L L N +T ID L NL L L SN + +L L + QL S+N +T
Sbjct: 109 LTGLTLFNNQITDIDPLKNLTNLNRLELSSNTISDISALSGLT-SLQQLSFSSNQVTDLK 167
Query: 108 PSSFCNLSSIQYLNLSNNSLSGQIPQCLGNSTLETLDLGMNNFQGSIPQTNAKGCNLTSL 167
P NL++++ L++S+N +S I + LE+L N P NL L
Sbjct: 168 P--LANLTTLERLDISSNKVS-DISVLAKLTNLESLIATNNQISDITPL--GILTNLDEL 222
Query: 168 RLSGNHLEGPLPPSLINCVNLQFLDVGNNNLSGPIPECLGNSTRLSFLDVGNNSLS--GP 225
L+GN L+ +L + NL LD+ NN +S P L T+L+ L +G N +S P
Sbjct: 223 SLNGNQLKDI--GTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP 278
Query: 226 IPECLANSTLEILDMRMNKFS 246
+ A + LE+ + ++ S
Sbjct: 279 LAGLTALTNLELNENQLEDIS 299
Score = 30.0 bits (66), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 44/132 (33%), Positives = 64/132 (48%), Gaps = 19/132 (14%)
Query: 24 QLEWLDLSKNQIRGRIPSWMWDIGVHTLQFLILSQNVLTSIDHLP-WKNLQYLTLDSNLL 82
+L L L NQI P G+ L L L++N L I + KNL YLTL N
Sbjct: 262 KLTELKLGANQISNISPLA----GLTALTNLELNENQLEDISPISNLKNLTYLTLYFN-- 315
Query: 83 QGSLPDLPP-----HMVQLLISNNSLTGEIPSSFCNLSSIQYLNLSNNSLSGQIPQCLGN 137
++ D+ P + +L SNN ++ SS NL++I +L+ +N +S P L N
Sbjct: 316 --NISDISPVSSLTKLQRLFFSNNKVSD--VSSLANLTNINWLSAGHNQISDLTP--LAN 369
Query: 138 STLETLDLGMNN 149
T T LG+N+
Sbjct: 370 LTRIT-QLGLND 380
>pdb|2OMX|A Chain A, Crystal Structure Of Inla S192n G194s+sHEC1 COMPLEX
Length = 462
Score = 37.0 bits (84), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 60/210 (28%), Positives = 95/210 (45%), Gaps = 37/210 (17%)
Query: 65 DHLPWKNLQYLTLDSNLLQGSLPDLPP-----HMVQLLISNNSLTGEIPSSFCNLSSIQY 119
D P NL LT L + D+ P ++ +L +S+N+++ S+ L+S+Q
Sbjct: 99 DITPLANLTNLT-GLTLFNNQITDIDPLKNLTNLNRLELSSNTISD--ISALSGLTSLQQ 155
Query: 120 LNLSNNSLSGQIPQCLGN-STLETLDLGMN------------NFQGSIPQTNAKG----- 161
LN S+N ++ P L N +TLE LD+ N N + I N
Sbjct: 156 LNFSSNQVTDLKP--LANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPL 213
Query: 162 ---CNLTSLRLSGNHLEGPLPPSLINCVNLQFLDVGNNNLSGPIPECLGNSTRLSFLDVG 218
NL L L+GN L+ +L + NL LD+ NN +S P L T+L+ L +G
Sbjct: 214 GILTNLDELSLNGNQLKD--IGTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLG 269
Query: 219 NNSLS--GPIPECLANSTLEILDMRMNKFS 246
N +S P+ A + LE+ + ++ S
Sbjct: 270 ANQISNISPLAGLTALTNLELNENQLEDIS 299
Score = 27.7 bits (60), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 43/132 (32%), Positives = 63/132 (47%), Gaps = 19/132 (14%)
Query: 24 QLEWLDLSKNQIRGRIPSWMWDIGVHTLQFLILSQNVLTSIDHLP-WKNLQYLTLDSNLL 82
+L L L NQI P G+ L L L++N L I + KNL YLTL N
Sbjct: 262 KLTELKLGANQISNISPLA----GLTALTNLELNENQLEDISPISNLKNLTYLTLYFN-- 315
Query: 83 QGSLPDLPP-----HMVQLLISNNSLTGEIPSSFCNLSSIQYLNLSNNSLSGQIPQCLGN 137
++ D+ P + +L NN ++ SS NL++I +L+ +N +S P L N
Sbjct: 316 --NISDISPVSSLTKLQRLFFYNNKVSD--VSSLANLTNINWLSAGHNQISDLTP--LAN 369
Query: 138 STLETLDLGMNN 149
T T LG+N+
Sbjct: 370 LTRIT-QLGLND 380
>pdb|3CVR|A Chain A, Crystal Structure Of The Full Length Ipah3
Length = 571
Score = 37.0 bits (84), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 41/127 (32%), Positives = 66/127 (51%), Gaps = 21/127 (16%)
Query: 54 LILSQNVLTSIDHLPWKNLQYLTLDSNLLQGSLPDLPPHMVQLLISNNSLTG--EIPSSF 111
L ++QN L S+ LP +L+YL N L +LP+LP + L + NN LT E+P
Sbjct: 85 LEITQNALISLPELP-ASLEYLDACDNRL-STLPELPASLKHLDVDNNQLTXLPELP--- 139
Query: 112 CNLSSIQYLNLSNNSLSGQIPQCLGNSTLETLDLGMNN--FQGSIPQTNAKGCNLTSLRL 169
+ ++Y+N NN L+ +P+ ++LE L + N F +P++ L +L +
Sbjct: 140 ---ALLEYINADNNQLTX-LPEL--PTSLEVLSVRNNQLTFLPELPES------LEALDV 187
Query: 170 SGNHLEG 176
S N LE
Sbjct: 188 STNLLES 194
>pdb|2OMT|A Chain A, Crystal Structure Of Inla G194s+sHEC1 COMPLEX
Length = 462
Score = 36.6 bits (83), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 62/201 (30%), Positives = 94/201 (46%), Gaps = 15/201 (7%)
Query: 51 LQFLILSQNVLTSIDHLP-WKNLQYLTLDSNLLQ--GSLPDLPPHMVQLLISNNSLTGEI 107
L L L N +T ID L NL L L SN + +L L + QL S+N +T
Sbjct: 109 LTGLTLFNNQITDIDPLKNLTNLNRLELSSNTISDISALSGLT-SLQQLSFSSNQVTDLK 167
Query: 108 PSSFCNLSSIQYLNLSNNSLSGQIPQCLGNSTLETLDLGMNNFQGSIPQTNAKGCNLTSL 167
P NL++++ L++S+N +S I + LE+L N P NL L
Sbjct: 168 P--LANLTTLERLDISSNKVS-DISVLAKLTNLESLIATNNQISDITPL--GILTNLDEL 222
Query: 168 RLSGNHLEGPLPPSLINCVNLQFLDVGNNNLSGPIPECLGNSTRLSFLDVGNNSLS--GP 225
L+GN L+ +L + NL LD+ NN +S P L T+L+ L +G N +S P
Sbjct: 223 SLNGNQLKDI--GTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP 278
Query: 226 IPECLANSTLEILDMRMNKFS 246
+ A + LE+ + ++ S
Sbjct: 279 LAGLTALTNLELNENQLEDIS 299
Score = 27.7 bits (60), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 43/132 (32%), Positives = 63/132 (47%), Gaps = 19/132 (14%)
Query: 24 QLEWLDLSKNQIRGRIPSWMWDIGVHTLQFLILSQNVLTSIDHLP-WKNLQYLTLDSNLL 82
+L L L NQI P G+ L L L++N L I + KNL YLTL N
Sbjct: 262 KLTELKLGANQISNISPLA----GLTALTNLELNENQLEDISPISNLKNLTYLTLYFN-- 315
Query: 83 QGSLPDLPP-----HMVQLLISNNSLTGEIPSSFCNLSSIQYLNLSNNSLSGQIPQCLGN 137
++ D+ P + +L NN ++ SS NL++I +L+ +N +S P L N
Sbjct: 316 --NISDISPVSSLTKLQRLFFYNNKVSD--VSSLANLTNINWLSAGHNQISDLTP--LAN 369
Query: 138 STLETLDLGMNN 149
T T LG+N+
Sbjct: 370 LTRIT-QLGLND 380
>pdb|4FHO|A Chain A, Crystal Structure Of An Internalin C2 (Inlc2) From
Listeria Monocytogenes Str. 4b F2365 At 1.90 A
Resolution
pdb|4FHO|B Chain B, Crystal Structure Of An Internalin C2 (Inlc2) From
Listeria Monocytogenes Str. 4b F2365 At 1.90 A
Resolution
Length = 231
Score = 36.2 bits (82), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 41/136 (30%), Positives = 62/136 (45%), Gaps = 9/136 (6%)
Query: 92 HMVQLLISNNSLTGEIPSSFCNLSSIQYLNLSNNSLSGQIPQCLGNSTLETLDLGMNNFQ 151
+++ L + +N +T P NL+ I L LS N L + G +++TLDL
Sbjct: 70 NLIGLELKDNQITDLTP--LKNLTKITELELSGNPLKN-VSAIAGLQSIKTLDLTSTQIT 126
Query: 152 GSIPQTNAKGCNLTSLRLSGNHLEGPLPPSLINCVNLQFLDVGNNNLSGPIPECLGNSTR 211
P A NL L L N + P L NLQ+L +GNN ++ P L N ++
Sbjct: 127 DVTPL--AGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNNQVNDLTP--LANLSK 180
Query: 212 LSFLDVGNNSLSGPIP 227
L+ L +N +S P
Sbjct: 181 LTTLRADDNKISDISP 196
>pdb|1H6U|A Chain A, Internalin H: Crystal Structure Of Fused N-Terminal
Domains
Length = 308
Score = 35.4 bits (80), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 40/132 (30%), Positives = 60/132 (45%), Gaps = 9/132 (6%)
Query: 92 HMVQLLISNNSLTGEIPSSFCNLSSIQYLNLSNNSLSGQIPQCLGNSTLETLDLGMNNFQ 151
+++ L + +N +T P NL+ I L LS N L + G +++TLDL
Sbjct: 64 NLIGLELKDNQITDLAP--LKNLTKITELELSGNPLK-NVSAIAGLQSIKTLDLTSTQIT 120
Query: 152 GSIPQTNAKGCNLTSLRLSGNHLEGPLPPSLINCVNLQFLDVGNNNLSGPIPECLGNSTR 211
P A NL L L N + P L NLQ+L +GN +S P L N ++
Sbjct: 121 DVTPL--AGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSDLTP--LANLSK 174
Query: 212 LSFLDVGNNSLS 223
L+ L +N +S
Sbjct: 175 LTTLKADDNKIS 186
>pdb|1ZIW|A Chain A, Human Toll-Like Receptor 3 Extracellular Domain Structure
Length = 680
Score = 34.7 bits (78), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 45/167 (26%), Positives = 73/167 (43%), Gaps = 4/167 (2%)
Query: 88 DLPPHMVQLLISNNSLTGEIPSSFCNLSSIQYLNLSNNSLSGQIPQ-CLGNSTLETLDLG 146
DLP ++ L +++N L ++F S + L++ N++S P+ C L+ L+L
Sbjct: 22 DLPTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQ 81
Query: 147 MNNFQGSIPQTNAKGCNLTSLRLSGNHLEGPLPPSLINCVNLQFLDVGNNNLSGPIPECL 206
N +T A NLT L L N ++ + NL LD+ +N LS
Sbjct: 82 HNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQ 141
Query: 207 GNSTRLSFLDVGNNSLSGPIPECL---ANSTLEILDMRMNKFSGSLP 250
L L + NN + E L ANS+L+ L++ N+ P
Sbjct: 142 VQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSP 188
Score = 32.3 bits (72), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 62/235 (26%), Positives = 91/235 (38%), Gaps = 32/235 (13%)
Query: 24 QLEWLDLSKNQIRGRIPSWMWDIGVHTLQFLILSQNVLTSIDHLPWKNLQYLTLDSNLLQ 83
LE LDL N+I + W G+ + + LS N +YL L N
Sbjct: 406 HLEVLDLGLNEIGQELTGQEWR-GLENIFEIYLSYN-------------KYLQLTRNSFA 451
Query: 84 GSLPDLPPHMVQLLISNNSL--TGEIPSSFCNLSSIQYLNLSNNSLSGQIPQCL-GNSTL 140
L P + +L++ +L PS F L ++ L+LSNN+++ L G L
Sbjct: 452 -----LVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKL 506
Query: 141 ETLDLGMNNFQGSIPQTNAKG--------CNLTSLRLSGNHLEGPLPPSLINCVNLQFLD 192
E LDL NN N G +L L L N + + L+ +D
Sbjct: 507 EILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIID 566
Query: 193 VGNNNLSGPIPECLGNSTRLSFLDVGNNSLSGPIPECL--ANSTLEILDMRMNKF 245
+G NNL+ N L L++ N ++ + A L LDMR N F
Sbjct: 567 LGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPF 621
>pdb|2A0Z|A Chain A, The Molecular Structure Of Toll-like Receptor 3 Ligand
Binding Domain
Length = 705
Score = 34.7 bits (78), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 45/167 (26%), Positives = 73/167 (43%), Gaps = 4/167 (2%)
Query: 88 DLPPHMVQLLISNNSLTGEIPSSFCNLSSIQYLNLSNNSLSGQIPQ-CLGNSTLETLDLG 146
DLP ++ L +++N L ++F S + L++ N++S P+ C L+ L+L
Sbjct: 27 DLPTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQ 86
Query: 147 MNNFQGSIPQTNAKGCNLTSLRLSGNHLEGPLPPSLINCVNLQFLDVGNNNLSGPIPECL 206
N +T A NLT L L N ++ + NL LD+ +N LS
Sbjct: 87 HNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQ 146
Query: 207 GNSTRLSFLDVGNNSLSGPIPECL---ANSTLEILDMRMNKFSGSLP 250
L L + NN + E L ANS+L+ L++ N+ P
Sbjct: 147 VQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSP 193
Score = 32.0 bits (71), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 62/235 (26%), Positives = 91/235 (38%), Gaps = 32/235 (13%)
Query: 24 QLEWLDLSKNQIRGRIPSWMWDIGVHTLQFLILSQNVLTSIDHLPWKNLQYLTLDSNLLQ 83
LE LDL N+I + W G+ + + LS N +YL L N
Sbjct: 411 HLEVLDLGLNEIGQELTGQEWR-GLENIFEIYLSYN-------------KYLQLTRNSFA 456
Query: 84 GSLPDLPPHMVQLLISNNSL--TGEIPSSFCNLSSIQYLNLSNNSLSGQIPQCL-GNSTL 140
L P + +L++ +L PS F L ++ L+LSNN+++ L G L
Sbjct: 457 -----LVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKL 511
Query: 141 ETLDLGMNNFQGSIPQTNAKG--------CNLTSLRLSGNHLEGPLPPSLINCVNLQFLD 192
E LDL NN N G +L L L N + + L+ +D
Sbjct: 512 EILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIID 571
Query: 193 VGNNNLSGPIPECLGNSTRLSFLDVGNNSLSGPIPECL--ANSTLEILDMRMNKF 245
+G NNL+ N L L++ N ++ + A L LDMR N F
Sbjct: 572 LGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPF 626
>pdb|1XKU|A Chain A, Crystal Structure Of The Dimeric Protein Core Of Decorin,
The Archetypal Small Leucine-Rich Repeat Proteoglycan
Length = 330
Score = 34.3 bits (77), Expect = 0.094, Method: Compositional matrix adjust.
Identities = 38/152 (25%), Positives = 70/152 (46%), Gaps = 29/152 (19%)
Query: 24 QLEWLDLSKNQIRG---RIPSWMWDIGVHTLQFLILSQNVLTSIDHL------------- 67
+LE L LSKNQ++ ++P + ++ VH + + ++V ++ +
Sbjct: 101 KLERLYLSKNQLKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSS 160
Query: 68 --------PWKNLQYLTL-DSNLLQGSLPD-LPPHMVQLLISNNSLTGEIPSSFCNLSSI 117
K L Y+ + D+N+ ++P LPP + +L + N +T +S L+++
Sbjct: 161 GIENGAFQGMKKLSYIRIADTNIT--TIPQGLPPSLTELHLDGNKITKVDAASLKGLNNL 218
Query: 118 QYLNLSNNSLSGQIPQCLGNSTLETLDLGMNN 149
L LS NS+S L N T +L +NN
Sbjct: 219 AKLGLSFNSISAVDNGSLAN-TPHLRELHLNN 249
Score = 32.3 bits (72), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 43/154 (27%), Positives = 70/154 (45%), Gaps = 9/154 (5%)
Query: 88 DLPPHMVQLLISNNSLTGEIPSSFCNLSSIQYLNLSNNSLSGQIPQCLGN-STLETLDLG 146
DLPP L + NN +T F NL ++ L L NN +S P LE L L
Sbjct: 49 DLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLS 108
Query: 147 MNNFQGSIPQTNAKGCNLTSLRLSGNHLEGPLPPSLINCVN-LQFLDVGNNNL--SGPIP 203
N + +P+ K L LR+ N + + S+ N +N + +++G N L SG
Sbjct: 109 KNQLK-ELPEKMPK--TLQELRVHENEITK-VRKSVFNGLNQMIVVELGTNPLKSSGIEN 164
Query: 204 ECLGNSTRLSFLDVGNNSLSGPIPECLANSTLEI 237
+LS++ + + +++ IP+ L S E+
Sbjct: 165 GAFQGMKKLSYIRIADTNITT-IPQGLPPSLTEL 197
Score = 31.2 bits (69), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 40/148 (27%), Positives = 65/148 (43%), Gaps = 27/148 (18%)
Query: 50 TLQFLILSQNVLTSIDHLPWK---NLQYLTLDSNLLQ----GSLPDLPPHMVQLLISNNS 102
+L L L N +T +D K NL L L N + GSL + P H+ +L ++NN
Sbjct: 193 SLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTP-HLRELHLNNNK 251
Query: 103 LTGEIPSSFCNLSSIQYLNLSNNSLSGQIPQCLGNSTLETLDLGMNNFQGSIPQTNAKGC 162
L ++P + IQ + L NN++S +G N+F P N K
Sbjct: 252 LV-KVPGGLADHKYIQVVYLHNNNISA---------------IGSNDF--CPPGYNTKKA 293
Query: 163 NLTSLRLSGNHLEG-PLPPSLINCVNLQ 189
+ + + L N ++ + PS CV ++
Sbjct: 294 SYSGVSLFSNPVQYWEIQPSTFRCVYVR 321
>pdb|1XCD|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 1
pdb|1XEC|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
pdb|1XEC|B Chain B, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
Length = 329
Score = 34.3 bits (77), Expect = 0.094, Method: Compositional matrix adjust.
Identities = 38/152 (25%), Positives = 70/152 (46%), Gaps = 29/152 (19%)
Query: 24 QLEWLDLSKNQIRG---RIPSWMWDIGVHTLQFLILSQNVLTSIDHL------------- 67
+LE L LSKNQ++ ++P + ++ VH + + ++V ++ +
Sbjct: 101 KLERLYLSKNQLKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSS 160
Query: 68 --------PWKNLQYLTL-DSNLLQGSLPD-LPPHMVQLLISNNSLTGEIPSSFCNLSSI 117
K L Y+ + D+N+ ++P LPP + +L + N +T +S L+++
Sbjct: 161 GIENGAFQGMKKLSYIRIADTNIT--TIPQGLPPSLTELHLDGNKITKVDAASLKGLNNL 218
Query: 118 QYLNLSNNSLSGQIPQCLGNSTLETLDLGMNN 149
L LS NS+S L N T +L +NN
Sbjct: 219 AKLGLSFNSISAVDNGSLAN-TPHLRELHLNN 249
Score = 32.3 bits (72), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 43/154 (27%), Positives = 70/154 (45%), Gaps = 9/154 (5%)
Query: 88 DLPPHMVQLLISNNSLTGEIPSSFCNLSSIQYLNLSNNSLSGQIPQCLGN-STLETLDLG 146
DLPP L + NN +T F NL ++ L L NN +S P LE L L
Sbjct: 49 DLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLS 108
Query: 147 MNNFQGSIPQTNAKGCNLTSLRLSGNHLEGPLPPSLINCVN-LQFLDVGNNNL--SGPIP 203
N + +P+ K L LR+ N + + S+ N +N + +++G N L SG
Sbjct: 109 KNQLK-ELPEKMPK--TLQELRVHENEITK-VRKSVFNGLNQMIVVELGTNPLKSSGIEN 164
Query: 204 ECLGNSTRLSFLDVGNNSLSGPIPECLANSTLEI 237
+LS++ + + +++ IP+ L S E+
Sbjct: 165 GAFQGMKKLSYIRIADTNITT-IPQGLPPSLTEL 197
Score = 31.2 bits (69), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 40/148 (27%), Positives = 65/148 (43%), Gaps = 27/148 (18%)
Query: 50 TLQFLILSQNVLTSIDHLPWK---NLQYLTLDSNLLQ----GSLPDLPPHMVQLLISNNS 102
+L L L N +T +D K NL L L N + GSL + P H+ +L ++NN
Sbjct: 193 SLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTP-HLRELHLNNNK 251
Query: 103 LTGEIPSSFCNLSSIQYLNLSNNSLSGQIPQCLGNSTLETLDLGMNNFQGSIPQTNAKGC 162
L ++P + IQ + L NN++S +G N+F P N K
Sbjct: 252 LV-KVPGGLADHKYIQVVYLHNNNISA---------------IGSNDF--CPPGYNTKKA 293
Query: 163 NLTSLRLSGNHLEG-PLPPSLINCVNLQ 189
+ + + L N ++ + PS CV ++
Sbjct: 294 SYSGVSLFSNPVQYWEIQPSTFRCVYVR 321
>pdb|3ULU|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form1)
pdb|3ULV|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form2)
Length = 694
Score = 34.3 bits (77), Expect = 0.097, Method: Compositional matrix adjust.
Identities = 44/161 (27%), Positives = 72/161 (44%), Gaps = 4/161 (2%)
Query: 88 DLPPHMVQLLISNNSLTGEIPSSFCNLSSIQYLNLSNNSLSGQIPQ-CLGNSTLETLDLG 146
DLP ++ L +++N L ++F S + L++ N++S P+ C L+ L+L
Sbjct: 32 DLPTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQ 91
Query: 147 MNNFQGSIPQTNAKGCNLTSLRLSGNHLEGPLPPSLINCVNLQFLDVGNNNLSGPIPECL 206
N +T A NLT L L N ++ + NL LD+ +N LS
Sbjct: 92 HNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQ 151
Query: 207 GNSTRLSFLDVGNNSLSGPIPECL---ANSTLEILDMRMNK 244
L L + NN + E L ANS+L+ L++ N+
Sbjct: 152 VQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQ 192
Score = 32.0 bits (71), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 62/235 (26%), Positives = 91/235 (38%), Gaps = 32/235 (13%)
Query: 24 QLEWLDLSKNQIRGRIPSWMWDIGVHTLQFLILSQNVLTSIDHLPWKNLQYLTLDSNLLQ 83
LE LDL N+I + W G+ + + LS N +YL L N
Sbjct: 416 HLEVLDLGLNEIGQELTGQEWR-GLENIFEIYLSYN-------------KYLQLTRNSFA 461
Query: 84 GSLPDLPPHMVQLLISNNSL--TGEIPSSFCNLSSIQYLNLSNNSLSGQIPQCL-GNSTL 140
L P + +L++ +L PS F L ++ L+LSNN+++ L G L
Sbjct: 462 -----LVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKL 516
Query: 141 ETLDLGMNNFQGSIPQTNAKG--------CNLTSLRLSGNHLEGPLPPSLINCVNLQFLD 192
E LDL NN N G +L L L N + + L+ +D
Sbjct: 517 EILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIID 576
Query: 193 VGNNNLSGPIPECLGNSTRLSFLDVGNNSLSGPIPECL--ANSTLEILDMRMNKF 245
+G NNL+ N L L++ N ++ + A L LDMR N F
Sbjct: 577 LGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPF 631
>pdb|2Z66|A Chain A, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|B Chain B, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|C Chain C, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|D Chain D, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 306
Score = 34.3 bits (77), Expect = 0.097, Method: Compositional matrix adjust.
Identities = 65/233 (27%), Positives = 102/233 (43%), Gaps = 34/233 (14%)
Query: 24 QLEWLDLSKNQIRGRIPSWMWDIGVHTLQFLILSQN--VLTSIDHLPWKNLQYLTLD-SN 80
QL L LS N + + D G +L++L LS N + S + L + L++L SN
Sbjct: 53 QLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSN 112
Query: 81 LLQGSLPDLPPHMVQLLISNNSLTGEIPSSFCNLSSIQYLNLSNNSLSGQIPQCL-GNST 139
L Q S E S F +L ++ YL++S+ G S+
Sbjct: 113 LKQMS--------------------EF-SVFLSLRNLIYLDISHTHTRVAFNGIFNGLSS 151
Query: 140 LETLDLGMNNFQGS-IPQTNAKGCNLTSLRLSGNHLEGPLPPSLINCVNLQFLDVGNNNL 198
LE L + N+FQ + +P + NLT L LS LE P + + +LQ L++ +NN
Sbjct: 152 LEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNF 211
Query: 199 SG--PIP-ECLGNSTRLSFLDVGNNSLSGPIPECLAN--STLEILDMRMNKFS 246
P +CL + L LD N + + L + S+L L++ N F+
Sbjct: 212 FSLDTFPYKCLNS---LQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFA 261
Score = 32.7 bits (73), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 31/113 (27%), Positives = 47/113 (41%), Gaps = 19/113 (16%)
Query: 16 PDILRTQHQLEWLDLSKNQIRGRIPSWMWDIGVHTLQFLILSQNVLTSIDHLPWKNLQYL 75
PDI L +LDLS+ Q+ P+ + +LQ L +S N S+D P+K L
Sbjct: 168 PDIFTELRNLTFLDLSQCQLEQLSPTAFNSLS--SLQVLNMSHNNFFSLDTFPYKCL--- 222
Query: 76 TLDSNLLQGSLPDLPPHMVQLLISNNSLTGEIPSSFCNLSSIQYLNLSNNSLS 128
SL L + ++ S P SS+ +LNL+ N +
Sbjct: 223 --------NSLQVLDYSLNHIMTSKKQELQHFP------SSLAFLNLTQNDFA 261
>pdb|3CIG|A Chain A, Crystal Structure Of Mouse Tlr3 Ectodomain
pdb|3CIY|A Chain A, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
pdb|3CIY|B Chain B, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
Length = 697
Score = 34.3 bits (77), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 35/114 (30%), Positives = 51/114 (44%), Gaps = 1/114 (0%)
Query: 88 DLPPHMVQLLISNNSLTGEIPSSFCNLSSIQYLNLSNNSLSGQIPQ-CLGNSTLETLDLG 146
DLP ++ L +++N L P++F S + L+ NS+S P+ C L+ L+L
Sbjct: 22 DLPSNITVLNLTHNQLRRLPPTNFTRYSQLAILDAGFNSISKLEPELCQILPLLKVLNLQ 81
Query: 147 MNNFQGSIPQTNAKGCNLTSLRLSGNHLEGPLPPSLINCVNLQFLDVGNNNLSG 200
N QT NLT L L N + N NL LD+ +N LS
Sbjct: 82 HNELSQISDQTFVFCTNLTELDLMSNSIHKIKSNPFKNQKNLIKLDLSHNGLSS 135
Score = 28.1 bits (61), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 71/295 (24%), Positives = 111/295 (37%), Gaps = 71/295 (24%)
Query: 25 LEWLDLSKNQIRGRIPSWMWDIGVHTLQFLILSQNVLT---------SIDHLPW---KNL 72
L +L L N I+ P + G+ L++L L + +ID + K L
Sbjct: 274 LRYLSLEYNNIQRLSPRSFY--GLSNLRYLSLKRAFTKQSVSLASHPNIDDFSFQWLKYL 331
Query: 73 QYLTLDSNLLQGSLPDLPPHMVQL--------LISNNSLTGEIPSSFCNLSSIQYLNLSN 124
+YL +D N + + + +V L S +LT E S + S + LNL+
Sbjct: 332 EYLNMDDNNIPSTKSNTFTGLVSLKYLSLSKTFTSLQTLTNETFVSLAH-SPLLTLNLTK 390
Query: 125 NSLSGQIPQCLGNST------LETLDLGMNNFQGSIPQTNAKGC-NLTSLRLSGNHL--- 174
N +S + N T L LDLG+N + + +G N+ + LS N
Sbjct: 391 NHISK-----IANGTFSWLGQLRILDLGLNEIEQKLSGQEWRGLRNIFEIYLSYNKYLQL 445
Query: 175 ---EGPLPPSLINCV--------------------NLQFLDVGNNNLSGPIPECLGNSTR 211
L PSL + NL LD+ NNN++ + L
Sbjct: 446 STSSFALVPSLQRLMLRRVALKNVDISPSPFRPLRNLTILDLSNNNIANINEDLLEGLEN 505
Query: 212 LSFLDVGNNSLS---------GPIPECLANSTLEILDMRMNKFSGSLPQNICKKL 257
L LD +N+L+ GP+ S L IL++ N +P + K L
Sbjct: 506 LEILDFQHNNLARLWKRANPGGPVNFLKGLSHLHILNLESNGL-DEIPVGVFKNL 559
>pdb|3O6N|A Chain A, Crystal Structure Of Apl1 Leucine-Rich Repeat Domain
Length = 390
Score = 33.9 bits (76), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 70/258 (27%), Positives = 107/258 (41%), Gaps = 44/258 (17%)
Query: 18 ILRTQHQLEWLDLSKNQIRGRIPSWMWDIGVHTLQFLILSQNVLTSIDHLPWKNLQYLTL 77
+L + Q+E L+L+ QI I ++ + HT+Q L + N + + ++N+ LT+
Sbjct: 64 LLDSFRQVELLNLNDLQIE-EIDTYAFAYA-HTIQKLYMGFNAIRYLPPHVFQNVPLLTV 121
Query: 78 DSNLLQGSLPDLP-------PHMVQLLISNNSLTGEIPSSFCNLSSIQYLNLSNNSLS-- 128
L + L LP P + L +SNN+L +F +S+Q L LS+N L+
Sbjct: 122 LV-LERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV 180
Query: 129 --GQIPQCLGN-------STL------ETLDLGMNNFQGSIPQTNAKGCNLTSLRLSGNH 173
IP STL E LD N+ N + LT L+L N+
Sbjct: 181 DLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPVNVE---LTILKLQHNN 237
Query: 174 LEGPLPPSLINCVNLQFLDVGNNNLSGPIPECLGNSTRLSFLDVGNNSLSG------PIP 227
L L+N L +D+ N L + RL L + NN L PIP
Sbjct: 238 LTD--TAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNLYGQPIP 295
Query: 228 ECLANSTLEILDMRMNKF 245
TL++LD+ N
Sbjct: 296 ------TLKVLDLSHNHL 307
>pdb|3A79|B Chain B, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
Length = 562
Score = 33.9 bits (76), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 31/113 (27%), Positives = 57/113 (50%), Gaps = 4/113 (3%)
Query: 21 TQHQLEWLDLSKNQIRGRIPSWMWDIGVHTLQFLILSQNVLTSIDH---LPW-KNLQYLT 76
T +L+ L L +N ++ + + +L+ L +S N L S + W +++ L
Sbjct: 375 TLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLN 434
Query: 77 LDSNLLQGSLPDLPPHMVQLLISNNSLTGEIPSSFCNLSSIQYLNLSNNSLSG 129
L SN+L GS+ P V++L +N+ IP +L ++Q LN+++N L
Sbjct: 435 LSSNMLTGSVFRCLPPKVKVLDLHNNRIMSIPKDVTHLQALQELNVASNQLKS 487
Score = 33.5 bits (75), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 38/130 (29%), Positives = 53/130 (40%), Gaps = 29/130 (22%)
Query: 88 DLPPHMVQLLISNNSLTGEIPSSFCNLSSIQYLNLSNNSL-SGQIPQCLGNSTLETLDLG 146
DLPP L +S NS++ LS ++ L LS+N + S L N LE LD+
Sbjct: 49 DLPPRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVS 108
Query: 147 MNNFQGSIPQTNAKGCNLTSLRLSGNHLEGPLPPSLINCVNLQFLDVGNNNLSG-PIPEC 205
N Q N C + SLR LD+ N+ P+ +
Sbjct: 109 HNRLQ------NISCCPMASLR---------------------HLDLSFNDFDVLPVCKE 141
Query: 206 LGNSTRLSFL 215
GN T+L+FL
Sbjct: 142 FGNLTKLTFL 151
Score = 30.0 bits (66), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 40/80 (50%), Gaps = 3/80 (3%)
Query: 98 ISNNSLTGEIPSSFCNLS-SIQYLNLSNNSLSGQIPQCLGNSTLETLDLGMNNFQGSIPQ 156
+S NSL C + SI LNLS+N L+G + +CL ++ LDL NN SIP+
Sbjct: 410 VSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLP-PKVKVLDLH-NNRIMSIPK 467
Query: 157 TNAKGCNLTSLRLSGNHLEG 176
L L ++ N L+
Sbjct: 468 DVTHLQALQELNVASNQLKS 487
>pdb|3OJA|B Chain B, Crystal Structure Of Lrim1APL1C COMPLEX
Length = 597
Score = 33.5 bits (75), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 72/253 (28%), Positives = 107/253 (42%), Gaps = 50/253 (19%)
Query: 24 QLEWLDLSKNQIRGRIPSWMWDIGVHTLQFLILSQNVLTSIDHLP---WKNLQYLTLDSN 80
Q+E L+L+ QI I ++ + HT+Q L + N +I +LP ++N+ LT+
Sbjct: 76 QVELLNLNDLQIE-EIDTYAFAYA-HTIQKLYMGFN---AIRYLPPHVFQNVPLLTVLV- 129
Query: 81 LLQGSLPDLP-------PHMVQLLISNNSLTGEIPSSFCNLSSIQYLNLSNNSLS----G 129
L + L LP P + L +SNN+L +F +S+Q L LS+N L+
Sbjct: 130 LERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLS 189
Query: 130 QIPQCLGN-------STL------ETLDLGMNNFQGSIPQTNAKGCNLTSLRLSGNHLEG 176
IP STL E LD N+ N + LT L+L N+L
Sbjct: 190 LIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPVNVE---LTILKLQHNNLTD 246
Query: 177 PLPPSLINCVNLQFLDVGNNNLSGPIPECLGNSTRLSFLDVGNNSLSG------PIPECL 230
L+N L +D+ N L + RL L + NN L PIP
Sbjct: 247 --TAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNLYGQPIP--- 301
Query: 231 ANSTLEILDMRMN 243
TL++LD+ N
Sbjct: 302 ---TLKVLDLSHN 311
>pdb|3V47|A Chain A, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
pdb|3V47|B Chain B, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
Length = 455
Score = 33.5 bits (75), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 40/132 (30%), Positives = 62/132 (46%), Gaps = 16/132 (12%)
Query: 7 VKTCNISE------FPDILRTQHQLEWLDLSKNQIRGRIPSWMWDIGVHTLQFLILSQNV 60
VKTC++S+ + LE L L++N+I + W G+ L L LSQN
Sbjct: 277 VKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFW--GLTHLLKLNLSQNF 334
Query: 61 LTSIDHLPWKN---LQYLTLDSNLLQGSLPDLP----PHMVQLLISNNSLTGEIPSSFCN 113
L SID ++N L+ L L N ++ +L D P++ +L + N L F
Sbjct: 335 LGSIDSRMFENLDKLEVLDLSYNHIR-ALGDQSFLGLPNLKELALDTNQLKSVPDGIFDR 393
Query: 114 LSSIQYLNLSNN 125
L+S+Q + L N
Sbjct: 394 LTSLQKIWLHTN 405
Score = 32.3 bits (72), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 41/160 (25%), Positives = 64/160 (40%), Gaps = 21/160 (13%)
Query: 86 LPDLPPHMVQLLISNNSLTGEIPSSFCNLSSIQYLNLSNNS------------LSGQIPQ 133
+P+LP H+ + +S NS+ +SF L +Q+L + + LS I
Sbjct: 25 VPELPAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIIL 84
Query: 134 CLGNSTLETLDLGMNNFQGSIPQTNAKGCNLTSLRLSGNHLEGPLPPSLINCVNLQFLDV 193
L + L+ G N ++ CNL LSGN + PL +L+ L +
Sbjct: 85 KLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFK-PL-------TSLEMLVL 136
Query: 194 GNNNLSGPIPECLG-NSTRLSFLDVGNNSLSGPIPECLAN 232
+NN+ P N R LD+ N + E L N
Sbjct: 137 RDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLN 176
>pdb|1OZN|A Chain A, 1.5a Crystal Structure Of The Nogo Receptor Ligand Binding
Domain Reveals A Convergent Recognition Scaffold
Mediating Inhibition Of Myelination
Length = 285
Score = 33.1 bits (74), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 32/129 (24%), Positives = 58/129 (44%), Gaps = 13/129 (10%)
Query: 6 QVKTCNISEF-PDILRTQHQLEWLDLSKNQIRGRIPSWMWDIGVHTLQFLILSQNVLTSI 64
+ C + E P + R L++L L N ++ D+G L L L N ++S+
Sbjct: 111 HLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLG--NLTHLFLHGNRISSV 168
Query: 65 DHLPWKNLQYLTLDSNLL-QGSLPDLPPH-------MVQLLISNNSLTGEIPSSFCNLSS 116
++ L +LD LL Q + + PH ++ L + N+L+ + L +
Sbjct: 169 PERAFRGLH--SLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRA 226
Query: 117 IQYLNLSNN 125
+QYL L++N
Sbjct: 227 LQYLRLNDN 235
Score = 30.4 bits (67), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 49/183 (26%), Positives = 68/183 (37%), Gaps = 20/183 (10%)
Query: 51 LQFLILSQNVLTSIDHLPWKNLQYLTLDSNLLQGSLPDLPPHMVQLLISNNS-LTGEIPS 109
L L L NVL ID + L L QL +S+N+ L P+
Sbjct: 58 LTILWLHSNVLARIDAAAFTGLALLE------------------QLDLSDNAQLRSVDPA 99
Query: 110 SFCNLSSIQYLNLSNNSLSGQIPQCL-GNSTLETLDLGMNNFQGSIPQTNAKGCNLTSLR 168
+F L + L+L L P G + L+ L L N Q T NLT L
Sbjct: 100 TFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLF 159
Query: 169 LSGNHLEGPLPPSLINCVNLQFLDVGNNNLSGPIPECLGNSTRLSFLDVGNNSLSGPIPE 228
L GN + + +L L + N ++ P + RL L + N+LS E
Sbjct: 160 LHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTE 219
Query: 229 CLA 231
LA
Sbjct: 220 ALA 222
>pdb|1P8T|A Chain A, Crystal Structure Of Nogo-66 Receptor
Length = 285
Score = 32.7 bits (73), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 32/129 (24%), Positives = 58/129 (44%), Gaps = 13/129 (10%)
Query: 6 QVKTCNISEF-PDILRTQHQLEWLDLSKNQIRGRIPSWMWDIGVHTLQFLILSQNVLTSI 64
+ C + E P + R L++L L N ++ D+G L L L N ++S+
Sbjct: 110 HLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLG--NLTHLFLHGNRISSV 167
Query: 65 DHLPWKNLQYLTLDSNLL-QGSLPDLPPH-------MVQLLISNNSLTGEIPSSFCNLSS 116
++ L +LD LL Q + + PH ++ L + N+L+ + L +
Sbjct: 168 PERAFRGLH--SLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRA 225
Query: 117 IQYLNLSNN 125
+QYL L++N
Sbjct: 226 LQYLRLNDN 234
Score = 30.4 bits (67), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 49/183 (26%), Positives = 68/183 (37%), Gaps = 20/183 (10%)
Query: 51 LQFLILSQNVLTSIDHLPWKNLQYLTLDSNLLQGSLPDLPPHMVQLLISNNS-LTGEIPS 109
L L L NVL ID + L L QL +S+N+ L P+
Sbjct: 57 LTILWLHSNVLARIDAAAFTGLALLE------------------QLDLSDNAQLRSVDPA 98
Query: 110 SFCNLSSIQYLNLSNNSLSGQIPQCL-GNSTLETLDLGMNNFQGSIPQTNAKGCNLTSLR 168
+F L + L+L L P G + L+ L L N Q T NLT L
Sbjct: 99 TFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLF 158
Query: 169 LSGNHLEGPLPPSLINCVNLQFLDVGNNNLSGPIPECLGNSTRLSFLDVGNNSLSGPIPE 228
L GN + + +L L + N ++ P + RL L + N+LS E
Sbjct: 159 LHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTE 218
Query: 229 CLA 231
LA
Sbjct: 219 ALA 221
>pdb|1O6S|A Chain A, Internalin (Listeria Monocytogenes) E-Cadherin (Human)
Recognition Complex
pdb|1O6T|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|B Chain B, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
Length = 466
Score = 32.7 bits (73), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 61/201 (30%), Positives = 92/201 (45%), Gaps = 16/201 (7%)
Query: 51 LQFLILSQNVLTSIDHLP-WKNLQYLTLDSNLLQ--GSLPDLPPHMVQLLISNNSLTGEI 107
L L L N +T ID L NL L L SN + +L L +Q L N +T
Sbjct: 114 LTGLTLFNNQITDIDPLKNLTNLNRLELSSNTISDISALSGLTS--LQQLSFGNQVTDLK 171
Query: 108 PSSFCNLSSIQYLNLSNNSLSGQIPQCLGNSTLETLDLGMNNFQGSIPQTNAKGCNLTSL 167
P NL++++ L++S+N +S I + LE+L N P NL L
Sbjct: 172 P--LANLTTLERLDISSNKVS-DISVLAKLTNLESLIATNNQISDITPL--GILTNLDEL 226
Query: 168 RLSGNHLEGPLPPSLINCVNLQFLDVGNNNLSGPIPECLGNSTRLSFLDVGNNSLS--GP 225
L+GN L+ +L + NL LD+ NN +S P L T+L+ L +G N +S P
Sbjct: 227 SLNGNQLKDI--GTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP 282
Query: 226 IPECLANSTLEILDMRMNKFS 246
+ A + LE+ + ++ S
Sbjct: 283 LAGLTALTNLELNENQLEDIS 303
Score = 28.1 bits (61), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 43/132 (32%), Positives = 63/132 (47%), Gaps = 19/132 (14%)
Query: 24 QLEWLDLSKNQIRGRIPSWMWDIGVHTLQFLILSQNVLTSIDHLP-WKNLQYLTLDSNLL 82
+L L L NQI P G+ L L L++N L I + KNL YLTL N
Sbjct: 266 KLTELKLGANQISNISPLA----GLTALTNLELNENQLEDISPISNLKNLTYLTLYFN-- 319
Query: 83 QGSLPDLPP-----HMVQLLISNNSLTGEIPSSFCNLSSIQYLNLSNNSLSGQIPQCLGN 137
++ D+ P + +L NN ++ SS NL++I +L+ +N +S P L N
Sbjct: 320 --NISDISPVSSLTKLQRLFFYNNKVSD--VSSLANLTNINWLSAGHNQISDLTP--LAN 373
Query: 138 STLETLDLGMNN 149
T T LG+N+
Sbjct: 374 LTRIT-QLGLND 384
>pdb|2OMZ|A Chain A, Crystal Structure Of Inla Y369a/hec1 Complex
Length = 466
Score = 32.7 bits (73), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 61/201 (30%), Positives = 92/201 (45%), Gaps = 16/201 (7%)
Query: 51 LQFLILSQNVLTSIDHLP-WKNLQYLTLDSNLLQ--GSLPDLPPHMVQLLISNNSLTGEI 107
L L L N +T ID L NL L L SN + +L L +Q L N +T
Sbjct: 113 LTGLTLFNNQITDIDPLKNLTNLNRLELSSNTISDISALSGLTS--LQQLSFGNQVTDLK 170
Query: 108 PSSFCNLSSIQYLNLSNNSLSGQIPQCLGNSTLETLDLGMNNFQGSIPQTNAKGCNLTSL 167
P NL++++ L++S+N +S I + LE+L N P NL L
Sbjct: 171 P--LANLTTLERLDISSNKVS-DISVLAKLTNLESLIATNNQISDITPL--GILTNLDEL 225
Query: 168 RLSGNHLEGPLPPSLINCVNLQFLDVGNNNLSGPIPECLGNSTRLSFLDVGNNSLS--GP 225
L+GN L+ +L + NL LD+ NN +S P L T+L+ L +G N +S P
Sbjct: 226 SLNGNQLKDI--GTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP 281
Query: 226 IPECLANSTLEILDMRMNKFS 246
+ A + LE+ + ++ S
Sbjct: 282 LAGLTALTNLELNENQLEDIS 302
Score = 29.3 bits (64), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 43/132 (32%), Positives = 64/132 (48%), Gaps = 19/132 (14%)
Query: 24 QLEWLDLSKNQIRGRIPSWMWDIGVHTLQFLILSQNVLTSIDHLP-WKNLQYLTLDSNLL 82
+L L L NQI P G+ L L L++N L I + KNL YLTL N
Sbjct: 265 KLTELKLGANQISNISPLA----GLTALTNLELNENQLEDISPISNLKNLTYLTLYFN-- 318
Query: 83 QGSLPDLPP-----HMVQLLISNNSLTGEIPSSFCNLSSIQYLNLSNNSLSGQIPQCLGN 137
++ D+ P + +L +NN ++ SS NL++I +L+ +N +S P L N
Sbjct: 319 --NISDISPVSSLTKLQRLFFANNKVSD--VSSLANLTNINWLSAGHNQISDLTP--LAN 372
Query: 138 STLETLDLGMNN 149
T T LG+N+
Sbjct: 373 LTRIT-QLGLND 383
>pdb|3RG1|A Chain A, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|E Chain E, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|I Chain I, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|M Chain M, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|B Chain B, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|F Chain F, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|J Chain J, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|N Chain N, Crystal Structure Of The Rp105MD-1 Complex
Length = 612
Score = 32.7 bits (73), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 38/137 (27%), Positives = 68/137 (49%), Gaps = 10/137 (7%)
Query: 24 QLEWLDLSKNQIRGRIPSWMWDIGVHTLQFLILSQNVL-TSIDHL--PWKNLQYLTLDSN 80
QLE LD++ + + P + +H L+ L LS +L TS HL ++L++L L N
Sbjct: 400 QLELLDVAFTHLHVKAPHSPFQ-NLHLLRVLNLSHCLLDTSNQHLLAGLQDLRHLNLQGN 458
Query: 81 LLQG------SLPDLPPHMVQLLISNNSLTGEIPSSFCNLSSIQYLNLSNNSLSGQIPQC 134
Q +L + + L++S+ +L +F L ++ +L+LS+NSL+G
Sbjct: 459 SFQDGSISKTNLLQMVGSLEILILSSCNLLSIDQQAFHGLRNVNHLDLSHNSLTGDSMDA 518
Query: 135 LGNSTLETLDLGMNNFQ 151
L + L++ NN +
Sbjct: 519 LSHLKGLYLNMASNNIR 535
>pdb|3V44|A Chain A, Crystal Structure Of The N-Terminal Fragment Of Zebrafish
Tlr5
Length = 407
Score = 32.3 bits (72), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 41/160 (25%), Positives = 64/160 (40%), Gaps = 21/160 (13%)
Query: 86 LPDLPPHMVQLLISNNSLTGEIPSSFCNLSSIQYLNLSNNS------------LSGQIPQ 133
+P+LP H+ + +S NS+ +SF L +Q+L + + LS I
Sbjct: 25 VPELPAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIIL 84
Query: 134 CLGNSTLETLDLGMNNFQGSIPQTNAKGCNLTSLRLSGNHLEGPLPPSLINCVNLQFLDV 193
L + L+ G N ++ CNL LSGN + PL +L+ L +
Sbjct: 85 KLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFK-PL-------TSLEMLVL 136
Query: 194 GNNNLSGPIPECLG-NSTRLSFLDVGNNSLSGPIPECLAN 232
+NN+ P N R LD+ N + E L N
Sbjct: 137 RDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLN 176
>pdb|2OMY|A Chain A, Crystal Structure Of Inla S192n/hec1 Complex
Length = 461
Score = 32.3 bits (72), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 61/201 (30%), Positives = 92/201 (45%), Gaps = 16/201 (7%)
Query: 51 LQFLILSQNVLTSIDHLP-WKNLQYLTLDSNLLQ--GSLPDLPPHMVQLLISNNSLTGEI 107
L L L N +T ID L NL L L SN + +L L +Q L N +T
Sbjct: 109 LTGLTLFNNQITDIDPLKNLTNLNRLELSSNTISDISALSGLTS--LQQLNFGNQVTDLK 166
Query: 108 PSSFCNLSSIQYLNLSNNSLSGQIPQCLGNSTLETLDLGMNNFQGSIPQTNAKGCNLTSL 167
P NL++++ L++S+N +S I + LE+L N P NL L
Sbjct: 167 P--LANLTTLERLDISSNKVS-DISVLAKLTNLESLIATNNQISDITPL--GILTNLDEL 221
Query: 168 RLSGNHLEGPLPPSLINCVNLQFLDVGNNNLSGPIPECLGNSTRLSFLDVGNNSLS--GP 225
L+GN L+ +L + NL LD+ NN +S P L T+L+ L +G N +S P
Sbjct: 222 SLNGNQLKDI--GTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP 277
Query: 226 IPECLANSTLEILDMRMNKFS 246
+ A + LE+ + ++ S
Sbjct: 278 LAGLTALTNLELNENQLEDIS 298
Score = 28.1 bits (61), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 43/132 (32%), Positives = 63/132 (47%), Gaps = 19/132 (14%)
Query: 24 QLEWLDLSKNQIRGRIPSWMWDIGVHTLQFLILSQNVLTSIDHLP-WKNLQYLTLDSNLL 82
+L L L NQI P G+ L L L++N L I + KNL YLTL N
Sbjct: 261 KLTELKLGANQISNISPLA----GLTALTNLELNENQLEDISPISNLKNLTYLTLYFN-- 314
Query: 83 QGSLPDLPP-----HMVQLLISNNSLTGEIPSSFCNLSSIQYLNLSNNSLSGQIPQCLGN 137
++ D+ P + +L NN ++ SS NL++I +L+ +N +S P L N
Sbjct: 315 --NISDISPVSSLTKLQRLFFYNNKVSD--VSSLANLTNINWLSAGHNQISDLTP--LAN 368
Query: 138 STLETLDLGMNN 149
T T LG+N+
Sbjct: 369 LTRIT-QLGLND 379
>pdb|2OMV|A Chain A, Crystal Structure Of Inla S192n Y369s/hec1 Complex
pdb|2OMW|A Chain A, Crystal Structure Of Inla S192n Y369s/mec1 Complex
Length = 461
Score = 32.0 bits (71), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 61/201 (30%), Positives = 92/201 (45%), Gaps = 16/201 (7%)
Query: 51 LQFLILSQNVLTSIDHLP-WKNLQYLTLDSNLLQ--GSLPDLPPHMVQLLISNNSLTGEI 107
L L L N +T ID L NL L L SN + +L L +Q L N +T
Sbjct: 109 LTGLTLFNNQITDIDPLKNLTNLNRLELSSNTISDISALSGLTS--LQQLNFGNQVTDLK 166
Query: 108 PSSFCNLSSIQYLNLSNNSLSGQIPQCLGNSTLETLDLGMNNFQGSIPQTNAKGCNLTSL 167
P NL++++ L++S+N +S I + LE+L N P NL L
Sbjct: 167 P--LANLTTLERLDISSNKVS-DISVLAKLTNLESLIATNNQISDITPL--GILTNLDEL 221
Query: 168 RLSGNHLEGPLPPSLINCVNLQFLDVGNNNLSGPIPECLGNSTRLSFLDVGNNSLS--GP 225
L+GN L+ +L + NL LD+ NN +S P L T+L+ L +G N +S P
Sbjct: 222 SLNGNQLKDI--GTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP 277
Query: 226 IPECLANSTLEILDMRMNKFS 246
+ A + LE+ + ++ S
Sbjct: 278 LAGLTALTNLELNENQLEDIS 298
Score = 30.0 bits (66), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 44/132 (33%), Positives = 64/132 (48%), Gaps = 19/132 (14%)
Query: 24 QLEWLDLSKNQIRGRIPSWMWDIGVHTLQFLILSQNVLTSIDHLP-WKNLQYLTLDSNLL 82
+L L L NQI P G+ L L L++N L I + KNL YLTL N
Sbjct: 261 KLTELKLGANQISNISPLA----GLTALTNLELNENQLEDISPISNLKNLTYLTLYFN-- 314
Query: 83 QGSLPDLPP-----HMVQLLISNNSLTGEIPSSFCNLSSIQYLNLSNNSLSGQIPQCLGN 137
++ D+ P + +L SNN ++ SS NL++I +L+ +N +S P L N
Sbjct: 315 --NISDISPVSSLTKLQRLFFSNNKVSD--VSSLANLTNINWLSAGHNQISDLTP--LAN 368
Query: 138 STLETLDLGMNN 149
T T LG+N+
Sbjct: 369 LTRIT-QLGLND 379
>pdb|3ZYI|A Chain A, Netring2 In Complex With Ngl2
Length = 452
Score = 31.6 bits (70), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 57/209 (27%), Positives = 86/209 (41%), Gaps = 24/209 (11%)
Query: 17 DILRTQHQLEWLDLSKNQIRGRIPSWMWDIGVHTLQFLILSQNVLTSIDHLPWKNLQYLT 76
D R H LE L L +N IR +I ++ G+ +L L L N LT I P +YL+
Sbjct: 93 DTFRHLHHLEVLQLGRNSIR-QIEVGAFN-GLASLNTLELFDNWLTVI---PSGAFEYLS 147
Query: 77 LDSNLLQGSLPDLPPHMVQLLISNNSLTGEIPSSFCNLSSIQYLNLSNNSLSGQIPQCL- 135
+ +L + NN + +F + S+ L+L I +
Sbjct: 148 ---------------KLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAF 192
Query: 136 -GNSTLETLDLGMNNFQGSIPQTNAKGCNLTSLRLSGNHLEGPLPPSLINCVNLQFLDVG 194
G L+ L+LGM N + T G L L +SGNH P S +L+ L V
Sbjct: 193 EGLFNLKYLNLGMCNIKDMPNLTPLVG--LEELEMSGNHFPEIRPGSFHGLSSLKKLWVM 250
Query: 195 NNNLSGPIPECLGNSTRLSFLDVGNNSLS 223
N+ +S L L++ +N+LS
Sbjct: 251 NSQVSLIERNAFDGLASLVELNLAHNNLS 279
>pdb|2XOT|A Chain A, Crystal Structure Of Neuronal Leucine Rich Repeat Protein
Amigo-1
pdb|2XOT|B Chain B, Crystal Structure Of Neuronal Leucine Rich Repeat Protein
Amigo-1
Length = 361
Score = 31.6 bits (70), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 36/69 (52%), Gaps = 2/69 (2%)
Query: 131 IPQCLGNSTLETLDLGMNNFQGSIPQ-TNAKGCNLTSLRLSGNHLEGPLPPSLINCVNLQ 189
+PQ L + T LDL NN + T + NL SL LS NHL + + NL+
Sbjct: 33 VPQSLPSYT-ALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLR 91
Query: 190 FLDVGNNNL 198
+LD+ +N+L
Sbjct: 92 YLDLSSNHL 100
Score = 31.2 bits (69), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 36/108 (33%), Positives = 51/108 (47%), Gaps = 9/108 (8%)
Query: 28 LDLSKNQIRGRIPSWMWDIGVHTLQFLILSQNVLTSID---HLPWKNLQYLTLDSNLL-- 82
LDLS N + W + L L+LS N L I +P NL+YL L SN L
Sbjct: 44 LDLSHNNLSRLRAEWT-PTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHT 102
Query: 83 --QGSLPDLPPHMVQLLISNNSLTGEIPSSFCNLSSIQYLNLSNNSLS 128
+ DL V LL+ NN + ++F +++ +Q L LS N +S
Sbjct: 103 LDEFLFSDLQALEV-LLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQIS 149
>pdb|3ZYJ|A Chain A, Netring1 In Complex With Ngl1
pdb|3ZYJ|C Chain C, Netring1 In Complex With Ngl1
Length = 440
Score = 30.8 bits (68), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 55/192 (28%), Positives = 87/192 (45%), Gaps = 20/192 (10%)
Query: 11 NISEFPDILRTQHQLEWLDLSKNQIRG-RIPSWMWDIGVHTLQFLILSQNVLTSIDHLPW 69
N+ E PD + T +L L+L +NQI+ ++ S+ + L+ L LS+N + +I+ +
Sbjct: 54 NLREVPDGISTNTRL--LNLHENQIQIIKVNSFK---HLRHLEILQLSRNHIRTIEIGAF 108
Query: 70 KNLQYL-TLDSNLLQGSLPDLP-------PHMVQLLISNNSLTGEIPSSFCNLSSIQYLN 121
L L TL+ L L +P + +L + NN + +F + S++ L+
Sbjct: 109 NGLANLNTLE--LFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLD 166
Query: 122 LSNNSLSGQIPQCL--GNSTLETLDLGMNNFQGSIPQTNAKGCNLTSLRLSGNHLEGPLP 179
L I + G S L L+L M N + IP L L LSGNHL P
Sbjct: 167 LGELKRLSYISEGAFEGLSNLRYLNLAMCNLR-EIPNLTPL-IKLDELDLSGNHLSAIRP 224
Query: 180 PSLINCVNLQFL 191
S ++LQ L
Sbjct: 225 GSFQGLMHLQKL 236
>pdb|3B2D|A Chain A, Crystal Structure Of Human Rp105MD-1 Complex
pdb|3B2D|B Chain B, Crystal Structure Of Human Rp105MD-1 Complex
Length = 603
Score = 30.4 bits (67), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 42/160 (26%), Positives = 73/160 (45%), Gaps = 14/160 (8%)
Query: 109 SSFCNLSSIQYLNLSNNSLSGQIPQCLGNSTLETLDLGMNNFQGSIPQTNAKGCNLTSLR 168
++F + +Q L+L+ L G G + L+ L L +N+F + A +LT L
Sbjct: 269 TTFQCFTQLQELDLTATHLKGLPSGMKGLNLLKKLVLSVNHFDQLCQISAANFPSLTHLY 328
Query: 169 LSGNHLEGPLPPSLINCV-NLQFLDVGNNNLSGPIPEC----LGNSTRLSFLDVGNNS-- 221
+ GN + L + + NLQ LD+ +N++ +C L N + L L++ +N
Sbjct: 329 IRGNVKKLHLGVGCLEKLGNLQTLDLSHNDIEA--SDCCSLQLKNLSHLQTLNLSHNEPL 386
Query: 222 --LSGPIPECLANSTLEILDMRMNKFSGSLPQNICKKLCF 259
S EC LE+LD+ + + PQ+ + L F
Sbjct: 387 GLQSQAFKEC---PQLELLDLAFTRLHINAPQSPFQNLHF 423
>pdb|2Z7X|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 520
Score = 30.0 bits (66), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 32/111 (28%), Positives = 55/111 (49%), Gaps = 6/111 (5%)
Query: 24 QLEWLDLSKNQIRGRIPSWMWDIGVHTLQFLILSQNVLTSIDH---LPW-KNLQYLTLDS 79
+LE L L NQ++ + +LQ L +SQN ++ + W K+L L + S
Sbjct: 349 ELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSS 408
Query: 80 NLLQGSLPD-LPPHMVQLLISNNSLTGEIPSSFCNLSSIQYLNLSNNSLSG 129
N+L ++ LPP + L + +N + IP L ++Q LN+++N L
Sbjct: 409 NILTDTIFRCLPPRIKVLDLHSNKIKS-IPKQVVKLEALQELNVASNQLKS 458
>pdb|2Z64|A Chain A, Crystal Structure Of Mouse Tlr4 And Mouse Md-2 Complex
Length = 599
Score = 30.0 bits (66), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 32/113 (28%), Positives = 60/113 (53%), Gaps = 13/113 (11%)
Query: 24 QLEWLDLSKNQIRGRIPSWMWDIGVHTLQFLILSQNVLTSIDHLPWKNLQYL----TLDS 79
+L+WLDLS+ +I I W G+H L LIL+ N + S + L L +++
Sbjct: 52 ELQWLDLSRCEIE-TIEDKAWH-GLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVET 109
Query: 80 NLLQGSLPDLP----PHMVQLLISNNSL-TGEIPSSFCNLSSIQYLNLSNNSL 127
L SL P + +L +++N + + ++P+ F NL+++ +++LS N +
Sbjct: 110 KL--ASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYI 160
Score = 28.1 bits (61), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 65/266 (24%), Positives = 96/266 (36%), Gaps = 74/266 (27%)
Query: 66 HLPWKNLQYLTLDSNLLQGSLPDLP----PHMVQLLISNNSLTGEIPSSFCNLSSIQYLN 121
H W++L ++++ L P P + L ++ N G I L S+ YL+
Sbjct: 301 HFKWQSL-------SIIRCQLKQFPTLDLPFLKSLTLTMNK--GSISFKKVALPSLSYLD 351
Query: 122 LSNNSLSGQIPQC-----LGNSTLETLDLGMN-------NFQG----------------- 152
LS N+LS C LG ++L LDL N NF G
Sbjct: 352 LSRNALS--FSGCCSYSDLGTNSLRHLDLSFNGAIIMSANFMGLEELQHLDFQHSTLKRV 409
Query: 153 ---------------SIPQTNAKG---------CNLTSLRLSGNHL-EGPLPPSLINCVN 187
I TN K +L +L+++GN + L N N
Sbjct: 410 TEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTN 469
Query: 188 LQFLDVGNNNLSGPIPECLGNSTRLSFLDVGNNSL----SGPIPECLANSTLEILDMRMN 243
L FLD+ L RL L++ +N+L S + + STL+ R+
Sbjct: 470 LTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIE 529
Query: 244 KFSGSLPQNICKKLCFGPLPPSLVNC 269
G L Q+ K L F L + V C
Sbjct: 530 TSKGIL-QHFPKSLAFFNLTNNSVAC 554
>pdb|3VQ1|A Chain A, Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLEX
pdb|3VQ1|B Chain B, Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLEX
pdb|3VQ2|A Chain A, Crystal Structure Of Mouse Tlr4MD-2LPS COMPLEX
pdb|3VQ2|B Chain B, Crystal Structure Of Mouse Tlr4MD-2LPS COMPLEX
Length = 606
Score = 29.6 bits (65), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 32/113 (28%), Positives = 60/113 (53%), Gaps = 13/113 (11%)
Query: 24 QLEWLDLSKNQIRGRIPSWMWDIGVHTLQFLILSQNVLTSIDHLPWKNLQYL----TLDS 79
+L+WLDLS+ +I I W G+H L LIL+ N + S + L L +++
Sbjct: 57 ELQWLDLSRCEIE-TIEDKAWH-GLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVET 114
Query: 80 NLLQGSLPDLP----PHMVQLLISNNSL-TGEIPSSFCNLSSIQYLNLSNNSL 127
L SL P + +L +++N + + ++P+ F NL+++ +++LS N +
Sbjct: 115 KL--ASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYI 165
>pdb|3J0A|A Chain A, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
pdb|3J0A|B Chain B, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
Length = 844
Score = 29.6 bits (65), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 51/194 (26%), Positives = 76/194 (39%), Gaps = 46/194 (23%)
Query: 50 TLQFLILSQNVLTSIDHLPW----KNLQYLTLDSNLLQG----SLPDLPPHMVQLLISNN 101
T + LS+N L ++D L + +LQ L L+ N P P + QL + N
Sbjct: 402 TANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGEN 461
Query: 102 SLTGEIPSSFC-----NLSSIQYLNLSNNSLSGQIPQCLGNSTLETLDLGMNNFQGSIPQ 156
L + C LS +Q L L++N L+ P +
Sbjct: 462 MLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSH------------------L 503
Query: 157 TNAKGCNLTSLRLSG-NHLEGPLPPSLINCVNLQFLDVGNNNLSGPIPECLGNSTRLSFL 215
T +G +L S RL+ +H + P NL+ LD+ N L P P+ LS L
Sbjct: 504 TALRGLSLNSNRLTVLSHNDLP--------ANLEILDISRNQLLAPNPDVF---VSLSVL 552
Query: 216 DVGNNSLSGPIPEC 229
D+ +N I EC
Sbjct: 553 DITHNKF---ICEC 563
>pdb|2BNH|A Chain A, Porcine Ribonuclease Inhibitor
pdb|1DFJ|I Chain I, Ribonuclease Inhibitor Complexed With Ribonuclease A
Length = 457
Score = 29.3 bits (64), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 53/196 (27%), Positives = 82/196 (41%), Gaps = 47/196 (23%)
Query: 95 QLLISNNSLT----GEIPSSFCNLSSIQYLNLSNNSLSGQIPQCLGNSTLETLDLGMNNF 150
+L + N SLT G +PS+ +L +++ L+LS+N LG++ L L G+ +
Sbjct: 85 KLSLQNCSLTEAGCGVLPSTLRSLPTLRELHLSDNP--------LGDAGLRLLCEGLLD- 135
Query: 151 QGSIPQTNAKGCNLTSLRLSGNHLEGPLPPSLINCVNLQFLDVGNNNLSGPIPECLGNST 210
PQ + + L RL+ E PL L L+ L V NN++ LG
Sbjct: 136 ----PQCHLEKLQLEYCRLTAASCE-PLASVLRATRALKELTVSNNDIGEAGARVLGQG- 189
Query: 211 RLSFLDVGNNSLSGPIPECLANSTLEILDMRMNKFSGSLPQNICKKLCFGPLPPSLVNCQ 270
LA+S ++ +R+ G P N CK LC +V Q
Sbjct: 190 -------------------LADSACQLETLRLENC-GLTPAN-CKDLC------GIVASQ 222
Query: 271 Y-LEVLDVGNNQIDDT 285
L LD+G+N + D
Sbjct: 223 ASLRELDLGSNGLGDA 238
>pdb|3A79|A Chain A, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
pdb|3A7B|A Chain A, Crystal Structure Of Tlr2-Streptococcus Pneumoniae
Lipoteichoic Acid Complex
pdb|3A7C|A Chain A, Crystal Structure Of Tlr2-Pe-Dtpa Complex
Length = 580
Score = 28.5 bits (62), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 41/137 (29%), Positives = 63/137 (45%), Gaps = 37/137 (27%)
Query: 94 VQLLISNNSLTGEIPSSFC-NLSSIQYLNLSNNSLSGQIPQCLGNS-------TLETLDL 145
V+ + NS +P SF +L S+++L+LS N + + + L NS +L+TL L
Sbjct: 338 VKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLM---VEEYLKNSACKGAWPSLQTLVL 394
Query: 146 GMNNFQGSIPQTNA---KGCNLTSLRLSGNHLEGPLPPS-------------------LI 183
N+ + S+ +T NLTSL +S N P+P S +
Sbjct: 395 SQNHLR-SMQKTGEILLTLKNLTSLDISRNTFH-PMPDSCQWPEKMRFLNLSSTGIRVVK 452
Query: 184 NCV--NLQFLDVGNNNL 198
C+ L+ LDV NNNL
Sbjct: 453 TCIPQTLEVLDVSNNNL 469
>pdb|2O6Q|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors A29
Length = 270
Score = 28.5 bits (62), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 39/138 (28%), Positives = 57/138 (41%), Gaps = 7/138 (5%)
Query: 72 LQYLTLDSNLLQ----GSLPDLPPHMVQLLISNNSLTGEIPSSFCNLSSIQYLNLSNNSL 127
L+ L L+ N LQ G +L ++ L +++N L F L ++ L L N L
Sbjct: 63 LRLLYLNDNKLQTLPAGIFKELK-NLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQL 121
Query: 128 SGQIPQCLGNST-LETLDLGMNNFQGSIPQTNAKGCNLTSLRLSGNHLEGPLPPSLINCV 186
P+ + T L L LG N Q K +L LRL N L+ +
Sbjct: 122 KSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLT 181
Query: 187 NLQFLDVGNNNLSGPIPE 204
L+ L + NN L +PE
Sbjct: 182 ELKTLKLDNNQLK-RVPE 198
>pdb|2ID5|A Chain A, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|B Chain B, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|C Chain C, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|D Chain D, Crystal Structure Of The Lingo-1 Ectodomain
Length = 477
Score = 28.5 bits (62), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 30/108 (27%), Positives = 51/108 (47%), Gaps = 23/108 (21%)
Query: 91 PHMVQLLISNNSLTGEIPSSFCNLSSIQYLNLSNNSLSGQIPQCLGNSTLETLDLGMNNF 150
PH+ +L ++ N ++ P +F NL +++ L L +N L + + LG+ F
Sbjct: 56 PHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRL-------------KLIPLGV--F 100
Query: 151 QGSIPQTNAKGCNLTSLRLSGNHLEGPLPPSLINCVNLQFLDVGNNNL 198
G NLT L +S N + L + NL+ L+VG+N+L
Sbjct: 101 TGL--------SNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDL 140
>pdb|2Z81|A Chain A, Crystal Structure Of The Tlr1-tlr2 Heterodimer Induced By
Binding Of A Tri-acylated Lipopeptide
pdb|2Z82|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 549
Score = 28.5 bits (62), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 41/137 (29%), Positives = 63/137 (45%), Gaps = 37/137 (27%)
Query: 94 VQLLISNNSLTGEIPSSFC-NLSSIQYLNLSNNSLSGQIPQCLGNS-------TLETLDL 145
V+ + NS +P SF +L S+++L+LS N + + + L NS +L+TL L
Sbjct: 312 VKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLM---VEEYLKNSACKGAWPSLQTLVL 368
Query: 146 GMNNFQGSIPQTNA---KGCNLTSLRLSGNHLEGPLPPS-------------------LI 183
N+ + S+ +T NLTSL +S N P+P S +
Sbjct: 369 SQNHLR-SMQKTGEILLTLKNLTSLDISRNTFH-PMPDSCQWPEKMRFLNLSSTGIRVVK 426
Query: 184 NCV--NLQFLDVGNNNL 198
C+ L+ LDV NNNL
Sbjct: 427 TCIPQTLEVLDVSNNNL 443
>pdb|3REZ|A Chain A, Glycoprotein Gpib Variant
pdb|3REZ|B Chain B, Glycoprotein Gpib Variant
pdb|3REZ|C Chain C, Glycoprotein Gpib Variant
pdb|3REZ|D Chain D, Glycoprotein Gpib Variant
Length = 129
Score = 28.1 bits (61), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 13/41 (31%), Positives = 24/41 (58%)
Query: 85 SLPDLPPHMVQLLISNNSLTGEIPSSFCNLSSIQYLNLSNN 125
+LP LP +L+++ N+LT P +F +L ++ +L N
Sbjct: 24 ALPALPARTTELVLTGNNLTSVPPGAFDHLPQLRTAHLGAN 64
>pdb|2XXS|A Chain A, Solution Structure Of The N-Terminal Domain Of The
Shigella Type Iii Secretion Protein Mxig
Length = 107
Score = 28.1 bits (61), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 36/70 (51%), Gaps = 7/70 (10%)
Query: 112 CNLSSIQYLNLSNNSLSGQIPQCLGNS------TLETLDLGMNNF-QGSIPQTNAKGCNL 164
NL+ + L N + + P GN+ T+ETL+ G +NF + IP T++K +
Sbjct: 2 SNLAPFRLLVKLTNGVGDEFPLYYGNNLIVLGRTIETLEFGNDNFPENIIPVTDSKSDGI 61
Query: 165 TSLRLSGNHL 174
L +S +++
Sbjct: 62 IYLTISKDNI 71
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.137 0.425
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,962,853
Number of Sequences: 62578
Number of extensions: 390984
Number of successful extensions: 1393
Number of sequences better than 100.0: 89
Number of HSP's better than 100.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 70
Number of HSP's that attempted gapping in prelim test: 995
Number of HSP's gapped (non-prelim): 223
length of query: 347
length of database: 14,973,337
effective HSP length: 100
effective length of query: 247
effective length of database: 8,715,537
effective search space: 2152737639
effective search space used: 2152737639
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.6 bits)