Query 040206
Match_columns 347
No_of_seqs 213 out of 3429
Neff 10.9
Searched_HMMs 46136
Date Fri Mar 29 06:08:34 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040206.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/040206hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00113 leucine-rich repeat r 100.0 2.7E-32 5.9E-37 269.7 23.2 251 1-252 70-327 (968)
2 PLN00113 leucine-rich repeat r 100.0 2.6E-32 5.6E-37 269.9 22.5 324 1-326 213-579 (968)
3 KOG4194 Membrane glycoprotein 100.0 6.3E-32 1.4E-36 233.8 3.4 302 2-316 127-438 (873)
4 KOG4194 Membrane glycoprotein 100.0 9.3E-31 2E-35 226.6 4.5 298 2-315 80-386 (873)
5 KOG0444 Cytoskeletal regulator 99.9 3.8E-28 8.3E-33 212.5 -0.7 303 3-311 35-379 (1255)
6 KOG0444 Cytoskeletal regulator 99.9 2.9E-25 6.4E-30 194.6 -3.3 298 3-306 10-328 (1255)
7 PRK15387 E3 ubiquitin-protein 99.9 8.4E-22 1.8E-26 183.6 16.6 262 3-314 204-465 (788)
8 KOG0472 Leucine-rich repeat pr 99.9 2.3E-25 5.1E-30 185.2 -7.3 107 201-309 426-543 (565)
9 KOG0472 Leucine-rich repeat pr 99.9 1.6E-24 3.5E-29 180.3 -7.6 236 2-246 70-310 (565)
10 PLN03210 Resistant to P. syrin 99.9 5.6E-20 1.2E-24 183.2 21.4 281 1-307 590-906 (1153)
11 PLN03210 Resistant to P. syrin 99.9 1.2E-19 2.6E-24 180.8 23.3 294 2-320 560-895 (1153)
12 PRK15387 E3 ubiquitin-protein 99.8 6.6E-20 1.4E-24 171.1 16.3 245 1-292 223-467 (788)
13 PRK15370 E3 ubiquitin-protein 99.8 1.6E-20 3.5E-25 176.0 12.1 249 2-283 180-428 (754)
14 KOG0618 Serine/threonine phosp 99.8 1.2E-21 2.6E-26 178.7 -0.1 311 1-322 46-434 (1081)
15 KOG0618 Serine/threonine phosp 99.8 1.9E-21 4.1E-26 177.4 0.9 212 91-307 241-489 (1081)
16 PRK15370 E3 ubiquitin-protein 99.8 2.1E-19 4.6E-24 168.5 13.5 248 23-308 178-429 (754)
17 KOG4237 Extracellular matrix p 99.8 7.2E-21 1.6E-25 158.3 -1.0 315 2-324 69-494 (498)
18 KOG4237 Extracellular matrix p 99.8 1.5E-21 3.3E-26 162.3 -6.6 299 5-322 51-375 (498)
19 cd00116 LRR_RI Leucine-rich re 99.7 2.8E-19 6.1E-24 155.5 -1.9 271 4-306 2-319 (319)
20 cd00116 LRR_RI Leucine-rich re 99.7 2.8E-18 6E-23 149.3 -0.3 246 2-281 25-318 (319)
21 KOG0617 Ras suppressor protein 99.6 1.1E-16 2.3E-21 119.0 -2.7 186 111-313 29-218 (264)
22 KOG0617 Ras suppressor protein 99.5 8.8E-17 1.9E-21 119.4 -5.1 159 132-308 27-187 (264)
23 KOG1909 Ran GTPase-activating 99.4 1.8E-14 3.9E-19 118.8 -4.0 142 158-307 153-311 (382)
24 KOG1909 Ran GTPase-activating 99.3 5.8E-14 1.3E-18 115.8 -2.8 163 138-309 157-344 (382)
25 KOG3207 Beta-tubulin folding c 99.3 8.5E-13 1.8E-17 112.1 2.3 197 1-198 122-338 (505)
26 KOG3207 Beta-tubulin folding c 99.2 1.4E-12 3.1E-17 110.7 -0.2 209 12-224 110-340 (505)
27 COG4886 Leucine-rich repeat (L 99.2 6.4E-11 1.4E-15 106.1 7.5 194 27-228 97-295 (394)
28 COG4886 Leucine-rich repeat (L 99.1 6.2E-11 1.3E-15 106.2 6.1 197 95-311 97-294 (394)
29 KOG0532 Leucine-rich repeat (L 99.1 1.8E-12 3.9E-17 113.7 -3.8 169 95-283 79-247 (722)
30 PF14580 LRR_9: Leucine-rich r 99.1 8.5E-11 1.8E-15 90.9 5.4 130 162-309 19-153 (175)
31 PF14580 LRR_9: Leucine-rich r 99.1 5.2E-11 1.1E-15 92.1 4.0 135 7-145 4-147 (175)
32 KOG1259 Nischarin, modulator o 99.1 4.7E-11 1E-15 97.1 1.9 226 14-247 173-413 (490)
33 KOG1259 Nischarin, modulator o 99.1 2.4E-11 5.3E-16 98.7 0.3 130 162-309 284-414 (490)
34 KOG0532 Leucine-rich repeat (L 99.0 2E-11 4.4E-16 107.2 -3.1 167 74-246 79-247 (722)
35 KOG4658 Apoptotic ATPase [Sign 98.9 5.4E-10 1.2E-14 107.5 4.3 77 3-81 548-629 (889)
36 PF13855 LRR_8: Leucine rich r 98.8 1.9E-09 4.1E-14 68.6 2.9 60 233-306 1-61 (61)
37 KOG2120 SCF ubiquitin ligase, 98.8 6.3E-11 1.4E-15 96.2 -6.4 168 1-172 186-373 (419)
38 PLN03150 hypothetical protein; 98.8 2.1E-08 4.5E-13 94.4 8.4 109 188-309 420-530 (623)
39 PF13855 LRR_8: Leucine rich r 98.7 1.3E-08 2.8E-13 64.7 3.4 59 163-221 2-60 (61)
40 PLN03150 hypothetical protein; 98.7 6.2E-08 1.3E-12 91.3 8.5 89 164-252 420-509 (623)
41 KOG0531 Protein phosphatase 1, 98.7 5.8E-09 1.3E-13 93.8 1.1 235 4-248 76-320 (414)
42 KOG0531 Protein phosphatase 1, 98.7 3.3E-09 7.1E-14 95.4 -0.8 245 20-284 69-319 (414)
43 KOG4658 Apoptotic ATPase [Sign 98.6 8.7E-08 1.9E-12 92.6 6.7 79 91-169 571-649 (889)
44 KOG2120 SCF ubiquitin ligase, 98.5 5.3E-09 1.2E-13 85.2 -3.0 148 1-149 211-374 (419)
45 KOG1859 Leucine-rich repeat pr 98.5 2.3E-09 5.1E-14 97.2 -6.2 128 163-308 165-293 (1096)
46 KOG1859 Leucine-rich repeat pr 98.5 1.1E-09 2.5E-14 99.1 -8.6 194 23-223 84-292 (1096)
47 KOG4341 F-box protein containi 98.4 5.1E-09 1.1E-13 89.0 -6.0 138 161-307 293-439 (483)
48 KOG2982 Uncharacterized conser 98.4 1.2E-07 2.5E-12 77.6 1.9 190 90-312 70-267 (418)
49 KOG2982 Uncharacterized conser 98.4 8.3E-08 1.8E-12 78.4 1.0 200 25-224 47-263 (418)
50 PRK15386 type III secretion pr 98.2 1.6E-05 3.4E-10 69.6 10.7 137 19-172 48-187 (426)
51 COG5238 RNA1 Ran GTPase-activa 98.2 8.2E-08 1.8E-12 77.5 -3.1 220 19-248 26-287 (388)
52 KOG1644 U2-associated snRNP A' 98.2 3.9E-06 8.4E-11 65.0 5.4 100 49-148 42-150 (233)
53 KOG4579 Leucine-rich repeat (L 98.1 1.4E-07 2.9E-12 68.3 -2.7 105 5-133 32-141 (177)
54 PRK15386 type III secretion pr 98.1 4.3E-05 9.2E-10 67.0 11.5 135 1-149 53-188 (426)
55 PF12799 LRR_4: Leucine Rich r 98.1 3.5E-06 7.7E-11 49.1 3.3 36 1-36 2-37 (44)
56 COG5238 RNA1 Ran GTPase-activa 98.0 1.4E-06 3.1E-11 70.5 0.6 233 69-308 29-317 (388)
57 KOG1644 U2-associated snRNP A' 98.0 7.8E-06 1.7E-10 63.3 4.5 121 3-127 22-152 (233)
58 PF12799 LRR_4: Leucine Rich r 98.0 5.5E-06 1.2E-10 48.2 2.5 36 271-307 2-37 (44)
59 KOG4341 F-box protein containi 98.0 2.1E-07 4.5E-12 79.5 -5.3 287 2-301 140-459 (483)
60 KOG3665 ZYG-1-like serine/thre 97.9 7.9E-06 1.7E-10 77.3 3.4 59 21-80 146-205 (699)
61 KOG4579 Leucine-rich repeat (L 97.8 4.1E-07 9E-12 65.8 -4.9 117 187-318 54-170 (177)
62 KOG3665 ZYG-1-like serine/thre 97.7 9.9E-06 2.1E-10 76.6 1.1 159 138-305 122-286 (699)
63 KOG2739 Leucine-rich acidic nu 97.2 0.0001 2.2E-09 59.6 0.3 109 15-127 35-155 (260)
64 PF13306 LRR_5: Leucine rich r 97.1 0.0026 5.6E-08 47.0 7.4 86 106-195 26-112 (129)
65 PF13306 LRR_5: Leucine rich r 97.0 0.0034 7.4E-08 46.4 7.1 59 158-218 8-66 (129)
66 KOG2739 Leucine-rich acidic nu 96.9 0.00058 1.3E-08 55.4 2.6 103 185-301 42-150 (260)
67 KOG2123 Uncharacterized conser 96.9 6.9E-05 1.5E-09 61.2 -3.2 76 3-83 22-101 (388)
68 KOG2123 Uncharacterized conser 96.7 6.6E-05 1.4E-09 61.3 -4.7 86 211-312 20-106 (388)
69 KOG1947 Leucine rich repeat pr 96.4 0.00025 5.4E-09 65.4 -3.6 233 19-283 184-440 (482)
70 PF00560 LRR_1: Leucine Rich R 95.8 0.0028 6E-08 30.6 0.2 18 24-42 1-18 (22)
71 PF00560 LRR_1: Leucine Rich R 95.3 0.0098 2.1E-07 28.6 1.2 17 296-313 2-18 (22)
72 KOG4308 LRR-containing protein 95.0 4.9E-05 1.1E-09 68.9 -13.4 188 93-308 89-304 (478)
73 KOG1947 Leucine rich repeat pr 94.3 0.0067 1.5E-07 55.9 -1.6 17 266-282 291-307 (482)
74 KOG4308 LRR-containing protein 94.0 9.2E-05 2E-09 67.2 -14.1 192 25-248 89-305 (478)
75 PF13504 LRR_7: Leucine rich r 93.6 0.051 1.1E-06 24.2 1.3 13 24-36 2-14 (17)
76 PF13516 LRR_6: Leucine Rich r 93.3 0.031 6.8E-07 27.5 0.5 22 22-43 1-22 (24)
77 PF13516 LRR_6: Leucine Rich r 93.1 0.036 7.7E-07 27.2 0.4 15 270-284 2-16 (24)
78 KOG3864 Uncharacterized conser 92.8 0.014 3.1E-07 45.7 -1.8 38 269-306 150-188 (221)
79 KOG3864 Uncharacterized conser 91.6 0.018 3.9E-07 45.2 -2.5 81 139-219 102-185 (221)
80 smart00370 LRR Leucine-rich re 91.4 0.19 4.1E-06 25.1 2.0 21 270-290 2-22 (26)
81 smart00369 LRR_TYP Leucine-ric 91.4 0.19 4.1E-06 25.1 2.0 21 270-290 2-22 (26)
82 KOG4242 Predicted myosin-I-bin 88.6 1.4 3E-05 39.6 6.1 114 187-310 355-484 (553)
83 smart00368 LRR_RI Leucine rich 82.6 0.93 2E-05 23.1 1.4 17 270-286 2-18 (28)
84 KOG3763 mRNA export factor TAP 80.7 1.1 2.3E-05 41.1 2.0 62 21-83 216-283 (585)
85 smart00367 LRR_CC Leucine-rich 78.8 1.3 2.8E-05 22.1 1.1 13 269-281 1-13 (26)
86 smart00365 LRR_SD22 Leucine-ri 76.3 2.4 5.2E-05 21.3 1.6 15 270-284 2-16 (26)
87 KOG0473 Leucine-rich repeat pr 74.1 0.061 1.3E-06 43.3 -6.7 22 262-283 103-124 (326)
88 KOG0473 Leucine-rich repeat pr 71.9 0.2 4.4E-06 40.5 -4.3 88 14-104 32-124 (326)
89 KOG3763 mRNA export factor TAP 65.5 4.2 9.2E-05 37.4 2.0 59 47-105 216-284 (585)
90 smart00364 LRR_BAC Leucine-ric 61.5 5.8 0.00013 19.9 1.2 16 2-17 4-19 (26)
91 TIGR00864 PCC polycystin catio 60.6 5.6 0.00012 44.0 2.1 36 276-311 1-36 (2740)
92 TIGR00864 PCC polycystin catio 23.2 58 0.0013 36.9 2.3 31 6-36 1-32 (2740)
93 PRK09718 hypothetical protein; 21.0 1.2E+02 0.0027 27.9 3.6 13 138-150 228-240 (512)
No 1
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=2.7e-32 Score=269.75 Aligned_cols=251 Identities=37% Similarity=0.557 Sum_probs=183.1
Q ss_pred CceEEEecCCCCC-CCChhhhcCCCccEEeccCCcccccCChhhhhcCCCcccEEEcCCCcCCC-CCCCCCCCCcEEEcc
Q 040206 1 KTIKTQVKTCNIS-EFPDILRTQHQLEWLDLSKNQIRGRIPSWMWDIGVHTLQFLILSQNVLTS-IDHLPWKNLQYLTLD 78 (347)
Q Consensus 1 ~l~~l~l~~~~~~-~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~-~~~~~~~~L~~L~l~ 78 (347)
+++.|+++++.+. .++.++..+++|+.|++++|.+.+.+|..++. .+++|++|++++|.+++ ++...+++|++|+++
T Consensus 70 ~v~~L~L~~~~i~~~~~~~~~~l~~L~~L~Ls~n~~~~~ip~~~~~-~l~~L~~L~Ls~n~l~~~~p~~~l~~L~~L~Ls 148 (968)
T PLN00113 70 RVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQLSGPIPDDIFT-TSSSLRYLNLSNNNFTGSIPRGSIPNLETLDLS 148 (968)
T ss_pred cEEEEEecCCCccccCChHHhCCCCCCEEECCCCccCCcCChHHhc-cCCCCCEEECcCCccccccCccccCCCCEEECc
Confidence 3678999999888 67788999999999999999998888888774 45899999999998864 344667888888888
Q ss_pred CCCCCccCCC---CCCCccEEEcccCcccccCCccccCCCCccEEEcccCcccccCCccc-CCccccEEECCCCcccccc
Q 040206 79 SNLLQGSLPD---LPPHMVQLLISNNSLTGEIPSSFCNLSSIQYLNLSNNSLSGQIPQCL-GNSTLETLDLGMNNFQGSI 154 (347)
Q Consensus 79 ~~~~~~~~~~---~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~ 154 (347)
+|.+.+..+. .+++|++|++++|.+....|..+.++++|++|++++|.+.+..+..+ .+.+|+.|++++|.+....
T Consensus 149 ~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~ 228 (968)
T PLN00113 149 NNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEI 228 (968)
T ss_pred CCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcC
Confidence 8887754443 24788888888888777777778888888888888887765554443 4567777777777776667
Q ss_pred CccCCCCCCccEEEccCCcccCCCccccccCCCCcEEEccCCcccCCCCccccCCCCCCeEEecCCccccCcCcccc-cc
Q 040206 155 PQTNAKGCNLTSLRLSGNHLEGPLPPSLINCVNLQFLDVGNNNLSGPIPECLGNSTRLSFLDVGNNSLSGPIPECLA-NS 233 (347)
Q Consensus 155 ~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~-~~ 233 (347)
|..+..+++|++|++++|.++...|..++.+++|+.|++++|.+.+..|..+..+++|+.|++++|.+.+..+..+. .+
T Consensus 229 p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~ 308 (968)
T PLN00113 229 PYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQ 308 (968)
T ss_pred ChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHcCCC
Confidence 77777777777777777777666666677777777777777776666666666666777777766666655444332 25
Q ss_pred CCcEEEcccCcccccCChh
Q 040206 234 TLEILDMRMNKFSGSLPQN 252 (347)
Q Consensus 234 ~L~~L~L~~~~~~~~~~~~ 252 (347)
+|+.|++++|.+.+.+|..
T Consensus 309 ~L~~L~l~~n~~~~~~~~~ 327 (968)
T PLN00113 309 NLEILHLFSNNFTGKIPVA 327 (968)
T ss_pred CCcEEECCCCccCCcCChh
Confidence 5666666666665544443
No 2
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=2.6e-32 Score=269.91 Aligned_cols=324 Identities=31% Similarity=0.454 Sum_probs=208.0
Q ss_pred CceEEEecCCCCC-CCChhhhcCCCccEEeccCCcccccCChhhhhcCCCcccEEEcCCCcCCCCCC---CCCCCCcEEE
Q 040206 1 KTIKTQVKTCNIS-EFPDILRTQHQLEWLDLSKNQIRGRIPSWMWDIGVHTLQFLILSQNVLTSIDH---LPWKNLQYLT 76 (347)
Q Consensus 1 ~l~~l~l~~~~~~-~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~---~~~~~L~~L~ 76 (347)
+|++|++++|.+. .+|..+.++++|++|++++|.+.+.+|..+..+ ++|+.|++++|.+++..+ ..+++|++|+
T Consensus 213 ~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l--~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ 290 (968)
T PLN00113 213 SLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNL--KNLQYLFLYQNKLSGPIPPSIFSLQKLISLD 290 (968)
T ss_pred CccEEECcCCccCCcCChhHhcCCCCCEEECcCceeccccChhHhCC--CCCCEEECcCCeeeccCchhHhhccCcCEEE
Confidence 3567777777776 677777777777777777777776666666544 777777777776654322 3456667777
Q ss_pred ccCCCCCccCCCC---CCCccEEEcccCcccccCCccccCCCCccEEEcccCcccccCCccc-CCccccEEECCCCcccc
Q 040206 77 LDSNLLQGSLPDL---PPHMVQLLISNNSLTGEIPSSFCNLSSIQYLNLSNNSLSGQIPQCL-GNSTLETLDLGMNNFQG 152 (347)
Q Consensus 77 l~~~~~~~~~~~~---~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~ 152 (347)
+++|.+.+..+.. +++|++|++++|.+....+..+..+++|+.|++++|.+.+..+..+ ..++|+.|++++|.+.+
T Consensus 291 Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~ 370 (968)
T PLN00113 291 LSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTG 370 (968)
T ss_pred CcCCeeccCCChhHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEe
Confidence 7666665444332 3566666666666655555556666666666666665554333322 23455555555555443
Q ss_pred ------------------------ccCccCCCCCCccEEEccCCcccCCCccccccCCCCcEEEccCCcccCCCCccccC
Q 040206 153 ------------------------SIPQTNAKGCNLTSLRLSGNHLEGPLPPSLINCVNLQFLDVGNNNLSGPIPECLGN 208 (347)
Q Consensus 153 ------------------------~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~ 208 (347)
..|..+..+++|+.+++++|.++...|..+..++.|+.|++++|.+.+..+..+..
T Consensus 371 ~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~ 450 (968)
T PLN00113 371 EIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWD 450 (968)
T ss_pred eCChhHhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeECChhHhcCCCCCEEECcCCcccCccChhhcc
Confidence 34444444555555555555555445555555666666666666665555555556
Q ss_pred CCCCCeEEecCCccccCcCccccccCCcEEEcccCcccccCChhhhcc-----------ccccCCCcCccCCCCCcEEEc
Q 040206 209 STRLSFLDVGNNSLSGPIPECLANSTLEILDMRMNKFSGSLPQNICKK-----------LCFGPLPPSLVNCQYLEVLDV 277 (347)
Q Consensus 209 ~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~-----------~~~~~l~~~~~~~~~L~~L~L 277 (347)
+++|+.|++++|.+.+..+.....++|+.|++++|.+.+.+|..+... .-.+.+|..+..+++|++|++
T Consensus 451 l~~L~~L~L~~n~~~~~~p~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L 530 (968)
T PLN00113 451 MPSLQMLSLARNKFFGGLPDSFGSKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDL 530 (968)
T ss_pred CCCCcEEECcCceeeeecCcccccccceEEECcCCccCCccChhhhhhhccCEEECcCCcceeeCChHHcCccCCCEEEC
Confidence 666666666666666555555555677888888888877777655432 122356677788888888888
Q ss_pred cCCccCCccchhhhhccCCCEEEcccceeecccCCccccceeeeeeEee
Q 040206 278 GNNQIDDTFLYWLDVLLQLQVLILRSNRFWGPIGKLRSRWSGHFIVRTV 326 (347)
Q Consensus 278 ~~n~i~~~~~~~~~~l~~L~~l~L~~n~~~~~~~~~~~~~~~~~~~~~~ 326 (347)
++|.+++..+..+..+++|+.|+|++|++.+.+|..+.....+..+...
T Consensus 531 s~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls 579 (968)
T PLN00113 531 SHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNIS 579 (968)
T ss_pred CCCcccccCChhHhCcccCCEEECCCCcccccCChhHhcCcccCEEecc
Confidence 8888888888888888888888888888888888877776655554443
No 3
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.97 E-value=6.3e-32 Score=233.77 Aligned_cols=302 Identities=23% Similarity=0.175 Sum_probs=209.0
Q ss_pred ceEEEecCCCCCCCC-hhhhcCCCccEEeccCCcccccCCh-hhhhcCCCcccEEEcCCCcCCCCCC---CCCCCCcEEE
Q 040206 2 TIKTQVKTCNISEFP-DILRTQHQLEWLDLSKNQIRGRIPS-WMWDIGVHTLQFLILSQNVLTSIDH---LPWKNLQYLT 76 (347)
Q Consensus 2 l~~l~l~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~-~~~~~~~~~L~~L~l~~~~l~~~~~---~~~~~L~~L~ 76 (347)
+++|+|.+|.++.+. +.++.++.|+.||++.|.|+ .++. .+..- .++++|+|++|.|+++.. ..+.+|..|.
T Consensus 127 l~~L~L~~N~I~sv~se~L~~l~alrslDLSrN~is-~i~~~sfp~~--~ni~~L~La~N~It~l~~~~F~~lnsL~tlk 203 (873)
T KOG4194|consen 127 LEKLDLRHNLISSVTSEELSALPALRSLDLSRNLIS-EIPKPSFPAK--VNIKKLNLASNRITTLETGHFDSLNSLLTLK 203 (873)
T ss_pred eeEEeeeccccccccHHHHHhHhhhhhhhhhhchhh-cccCCCCCCC--CCceEEeeccccccccccccccccchheeee
Confidence 345555555555444 25555555555555555555 3322 22221 456666666666665554 2334555666
Q ss_pred ccCCCCCccCCCCC---CCccEEEcccCcccccCCccccCCCCccEEEcccCcccccCCccc-CCccccEEECCCCcccc
Q 040206 77 LDSNLLQGSLPDLP---PHMVQLLISNNSLTGEIPSSFCNLSSIQYLNLSNNSLSGQIPQCL-GNSTLETLDLGMNNFQG 152 (347)
Q Consensus 77 l~~~~~~~~~~~~~---~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~ 152 (347)
++.|.++..+...+ ++|+.|++..|.+.......|.++++|+.|.+..|.+.......| ++..+++|+++.|.+..
T Consensus 204 LsrNrittLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~ 283 (873)
T KOG4194|consen 204 LSRNRITTLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQA 283 (873)
T ss_pred cccCcccccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhh
Confidence 66666665554443 566677777777764446667777777777777777766555544 56678888888888776
Q ss_pred ccCccCCCCCCccEEEccCCcccCCCccccccCCCCcEEEccCCcccCCCCccccCCCCCCeEEecCCccccCcCcccc-
Q 040206 153 SIPQTNAKGCNLTSLRLSGNHLEGPLPPSLINCVNLQFLDVGNNNLSGPIPECLGNSTRLSFLDVGNNSLSGPIPECLA- 231 (347)
Q Consensus 153 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~- 231 (347)
....++.+++.|+.|+++.|.+..+.+..+..+++|+.|++++|++....+..|..+..|++|+++.|.+.......+.
T Consensus 284 vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~ 363 (873)
T KOG4194|consen 284 VNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVG 363 (873)
T ss_pred hhcccccccchhhhhccchhhhheeecchhhhcccceeEeccccccccCChhHHHHHHHhhhhcccccchHHHHhhHHHH
Confidence 7777777888888888888888777777788888888888888888777777777888888888888877644333333
Q ss_pred ccCCcEEEcccCcccccCChhhhccccccCCCcCccCCCCCcEEEccCCccCCccchhhhhccCCCEEEcccceeecccC
Q 040206 232 NSTLEILDMRMNKFSGSLPQNICKKLCFGPLPPSLVNCQYLEVLDVGNNQIDDTFLYWLDVLLQLQVLILRSNRFWGPIG 311 (347)
Q Consensus 232 ~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~l~L~~n~~~~~~~ 311 (347)
.++|++|||++|.+...+.+ -...|.++++|++|++.||++..+....|.++++|++|||.+|++-.--+
T Consensus 364 lssL~~LdLr~N~ls~~IED----------aa~~f~gl~~LrkL~l~gNqlk~I~krAfsgl~~LE~LdL~~NaiaSIq~ 433 (873)
T KOG4194|consen 364 LSSLHKLDLRSNELSWCIED----------AAVAFNGLPSLRKLRLTGNQLKSIPKRAFSGLEALEHLDLGDNAIASIQP 433 (873)
T ss_pred hhhhhhhcCcCCeEEEEEec----------chhhhccchhhhheeecCceeeecchhhhccCcccceecCCCCcceeecc
Confidence 37899999999988864433 33468889999999999999998888999999999999999999876544
Q ss_pred Ccccc
Q 040206 312 KLRSR 316 (347)
Q Consensus 312 ~~~~~ 316 (347)
+-+..
T Consensus 434 nAFe~ 438 (873)
T KOG4194|consen 434 NAFEP 438 (873)
T ss_pred ccccc
Confidence 44443
No 4
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.96 E-value=9.3e-31 Score=226.57 Aligned_cols=298 Identities=23% Similarity=0.202 Sum_probs=231.9
Q ss_pred ceEEEecCCCCCC-CChhhhcCCCccEEeccCCcccccCChhhhhcCCCcccEEEcCCCcCCCCCC---CCCCCCcEEEc
Q 040206 2 TIKTQVKTCNISE-FPDILRTQHQLEWLDLSKNQIRGRIPSWMWDIGVHTLQFLILSQNVLTSIDH---LPWKNLQYLTL 77 (347)
Q Consensus 2 l~~l~l~~~~~~~-~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~---~~~~~L~~L~l 77 (347)
.+.|++++|.+.. -+..|.++++|+.+++..|.++ .+|...... .+|+.|+|.+|.|+.+.. ..++.|+.|++
T Consensus 80 t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt-~IP~f~~~s--ghl~~L~L~~N~I~sv~se~L~~l~alrslDL 156 (873)
T KOG4194|consen 80 TQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELT-RIPRFGHES--GHLEKLDLRHNLISSVTSEELSALPALRSLDL 156 (873)
T ss_pred eeeeeccccccccCcHHHHhcCCcceeeeeccchhh-hcccccccc--cceeEEeeeccccccccHHHHHhHhhhhhhhh
Confidence 4578999999984 4467889999999999998887 888776654 679999999998888877 45578999999
Q ss_pred cCCCCCccCCCCC---CCccEEEcccCcccccCCccccCCCCccEEEcccCcccccCCcccC-CccccEEECCCCccccc
Q 040206 78 DSNLLQGSLPDLP---PHMVQLLISNNSLTGEIPSSFCNLSSIQYLNLSNNSLSGQIPQCLG-NSTLETLDLGMNNFQGS 153 (347)
Q Consensus 78 ~~~~~~~~~~~~~---~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~-~~~L~~L~l~~~~~~~~ 153 (347)
+.|.++......+ .++++|++++|.|+......|.++.+|.+|.++.|.++..+...|. ++.|+.|++..|.+...
T Consensus 157 SrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~iriv 236 (873)
T KOG4194|consen 157 SRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIV 236 (873)
T ss_pred hhchhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhccccceeee
Confidence 9999887655554 5799999999999988888899999999999999999877777775 78899999999888644
Q ss_pred cCccCCCCCCccEEEccCCcccCCCccccccCCCCcEEEccCCcccCCCCccccCCCCCCeEEecCCccccCcCccccc-
Q 040206 154 IPQTNAKGCNLTSLRLSGNHLEGPLPPSLINCVNLQFLDVGNNNLSGPIPECLGNSTRLSFLDVGNNSLSGPIPECLAN- 232 (347)
Q Consensus 154 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~- 232 (347)
-...|..++.|+.+.+.+|.+......+|..+.++++|++..|++...-..++..++.|+.|++++|.|..........
T Consensus 237 e~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~Wsft 316 (873)
T KOG4194|consen 237 EGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFT 316 (873)
T ss_pred hhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhheeecchhhhc
Confidence 4667888888888888888887666667888888888888888887666677888888888888888877654443333
Q ss_pred cCCcEEEcccCcccccCChhhhccccccCCCcCccCCCCCcEEEccCCccCCccchhhhhccCCCEEEcccceeecccCC
Q 040206 233 STLEILDMRMNKFSGSLPQNICKKLCFGPLPPSLVNCQYLEVLDVGNNQIDDTFLYWLDVLLQLQVLILRSNRFWGPIGK 312 (347)
Q Consensus 233 ~~L~~L~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~l~L~~n~~~~~~~~ 312 (347)
++|+.|+|++|.++..-+ ..|..+..|++|+|++|+++..-...|..+++|+.|||+.|.+.+.+-+
T Consensus 317 qkL~~LdLs~N~i~~l~~-------------~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IED 383 (873)
T KOG4194|consen 317 QKLKELDLSSNRITRLDE-------------GSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIED 383 (873)
T ss_pred ccceeEeccccccccCCh-------------hHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEec
Confidence 788888888888884322 2455666777777777777665556666777777777777777665554
Q ss_pred ccc
Q 040206 313 LRS 315 (347)
Q Consensus 313 ~~~ 315 (347)
...
T Consensus 384 aa~ 386 (873)
T KOG4194|consen 384 AAV 386 (873)
T ss_pred chh
Confidence 433
No 5
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.93 E-value=3.8e-28 Score=212.46 Aligned_cols=303 Identities=26% Similarity=0.327 Sum_probs=174.3
Q ss_pred eEEEecCCCCCCCChhhhcCCCccEEeccCCcccccCChhhhhcCCCcccEEEcCCCcCCC--CCC--CCCCCCcEEEcc
Q 040206 3 IKTQVKTCNISEFPDILRTQHQLEWLDLSKNQIRGRIPSWMWDIGVHTLQFLILSQNVLTS--IDH--LPWKNLQYLTLD 78 (347)
Q Consensus 3 ~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~--~~~--~~~~~L~~L~l~ 78 (347)
++|.|....+..+|+.++.+.+|++|++++|++.... ..+. .++.||.+.++.|++.+ ++. ..+..|+.|+++
T Consensus 35 ~WLkLnrt~L~~vPeEL~~lqkLEHLs~~HN~L~~vh-GELs--~Lp~LRsv~~R~N~LKnsGiP~diF~l~dLt~lDLS 111 (1255)
T KOG0444|consen 35 TWLKLNRTKLEQVPEELSRLQKLEHLSMAHNQLISVH-GELS--DLPRLRSVIVRDNNLKNSGIPTDIFRLKDLTILDLS 111 (1255)
T ss_pred eEEEechhhhhhChHHHHHHhhhhhhhhhhhhhHhhh-hhhc--cchhhHHHhhhccccccCCCCchhcccccceeeecc
Confidence 4444444444455544555555555555554444211 1122 22555555555554433 222 344566666777
Q ss_pred CCCCCccCCCC--CCCccEEEcccCcccccCCccccCCCCccEEEcccCcccccCCcccCCccccEEECCCCccccccCc
Q 040206 79 SNLLQGSLPDL--PPHMVQLLISNNSLTGEIPSSFCNLSSIQYLNLSNNSLSGQIPQCLGNSTLETLDLGMNNFQGSIPQ 156 (347)
Q Consensus 79 ~~~~~~~~~~~--~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~ 156 (347)
.|++...+..+ .+++-.|++++|+|..+....|.++..|-.|++++|.+...+|..-.+..|++|.+++|.+.+.--.
T Consensus 112 hNqL~EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~NrLe~LPPQ~RRL~~LqtL~Ls~NPL~hfQLr 191 (1255)
T KOG0444|consen 112 HNQLREVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNNRLEMLPPQIRRLSMLQTLKLSNNPLNHFQLR 191 (1255)
T ss_pred hhhhhhcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccchhhhcCHHHHHHhhhhhhhcCCChhhHHHHh
Confidence 66666444333 2566667777777664444445566666677777776665555555556677777777766543334
Q ss_pred cCCCCCCccEEEccCCccc-CCCccccccCCCCcEEEccCCcccCCCCccccCCCCCCeEEecCCccccCcCccccccCC
Q 040206 157 TNAKGCNLTSLRLSGNHLE-GPLPPSLINCVNLQFLDVGNNNLSGPIPECLGNSTRLSFLDVGNNSLSGPIPECLANSTL 235 (347)
Q Consensus 157 ~~~~~~~L~~L~l~~~~~~-~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~L 235 (347)
.+..++.|+.|.+++.+-+ ..+|..+..+.+|..+|++.|++. ..|+.+-.+++|+.|++++|.+++.....-...+|
T Consensus 192 QLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp-~vPecly~l~~LrrLNLS~N~iteL~~~~~~W~~l 270 (1255)
T KOG0444|consen 192 QLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLP-IVPECLYKLRNLRRLNLSGNKITELNMTEGEWENL 270 (1255)
T ss_pred cCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCC-cchHHHhhhhhhheeccCcCceeeeeccHHHHhhh
Confidence 4445555666666554332 345566666677777777777766 56677777777777777777776544433334566
Q ss_pred cEEEcccCcccccCChhhhcc-----------------------------------ccccCCCcCccCCCCCcEEEccCC
Q 040206 236 EILDMRMNKFSGSLPQNICKK-----------------------------------LCFGPLPPSLVNCQYLEVLDVGNN 280 (347)
Q Consensus 236 ~~L~L~~~~~~~~~~~~~~~~-----------------------------------~~~~~l~~~~~~~~~L~~L~L~~n 280 (347)
+.|+++.|+++ ..|..+|++ ..+.-+|..+..|++|+.|.|+.|
T Consensus 271 EtLNlSrNQLt-~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~LElVPEglcRC~kL~kL~L~~N 349 (1255)
T KOG0444|consen 271 ETLNLSRNQLT-VLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNKLELVPEGLCRCVKLQKLKLDHN 349 (1255)
T ss_pred hhhccccchhc-cchHHHhhhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhccccccCchhhhhhHHHHHhccccc
Confidence 66666666666 455555553 344445556666666777777777
Q ss_pred ccCCccchhhhhccCCCEEEcccceeecccC
Q 040206 281 QIDDTFLYWLDVLLQLQVLILRSNRFWGPIG 311 (347)
Q Consensus 281 ~i~~~~~~~~~~l~~L~~l~L~~n~~~~~~~ 311 (347)
++.. .|+.+.-++.|+.||+.+|+-.-..|
T Consensus 350 rLiT-LPeaIHlL~~l~vLDlreNpnLVMPP 379 (1255)
T KOG0444|consen 350 RLIT-LPEAIHLLPDLKVLDLRENPNLVMPP 379 (1255)
T ss_pred ceee-chhhhhhcCCcceeeccCCcCccCCC
Confidence 6653 55556666777777777777554443
No 6
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.89 E-value=2.9e-25 Score=194.56 Aligned_cols=298 Identities=22% Similarity=0.285 Sum_probs=236.0
Q ss_pred eEEEecCCCCC--CCChhhhcCCCccEEeccCCcccccCChhhhhcCCCcccEEEcCCCcCCCCCC--CCCCCCcEEEcc
Q 040206 3 IKTQVKTCNIS--EFPDILRTQHQLEWLDLSKNQIRGRIPSWMWDIGVHTLQFLILSQNVLTSIDH--LPWKNLQYLTLD 78 (347)
Q Consensus 3 ~~l~l~~~~~~--~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~--~~~~~L~~L~l~ 78 (347)
+-+|+++|.++ .+|..+..|++++.|.+...++. .+|..+..+ .+|++|.+++|++..+.. ..++.|+.+.+.
T Consensus 10 rGvDfsgNDFsg~~FP~~v~qMt~~~WLkLnrt~L~-~vPeEL~~l--qkLEHLs~~HN~L~~vhGELs~Lp~LRsv~~R 86 (1255)
T KOG0444|consen 10 RGVDFSGNDFSGDRFPHDVEQMTQMTWLKLNRTKLE-QVPEELSRL--QKLEHLSMAHNQLISVHGELSDLPRLRSVIVR 86 (1255)
T ss_pred ecccccCCcCCCCcCchhHHHhhheeEEEechhhhh-hChHHHHHH--hhhhhhhhhhhhhHhhhhhhccchhhHHHhhh
Confidence 55789999988 99999999999999999999998 899999876 999999999999888766 778999999999
Q ss_pred CCCCC--ccCCCCC--CCccEEEcccCcccccCCccccCCCCccEEEcccCcccccCCccc-CCccccEEECCCCccccc
Q 040206 79 SNLLQ--GSLPDLP--PHMVQLLISNNSLTGEIPSSFCNLSSIQYLNLSNNSLSGQIPQCL-GNSTLETLDLGMNNFQGS 153 (347)
Q Consensus 79 ~~~~~--~~~~~~~--~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~ 153 (347)
+|++. +++...+ ..|+.|++++|+++ ..|..+.+-+++..|+++.|+|..++...+ .+..|-.|++++|.+. .
T Consensus 87 ~N~LKnsGiP~diF~l~dLt~lDLShNqL~-EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~NrLe-~ 164 (1255)
T KOG0444|consen 87 DNNLKNSGIPTDIFRLKDLTILDLSHNQLR-EVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNNRLE-M 164 (1255)
T ss_pred ccccccCCCCchhcccccceeeecchhhhh-hcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccchhh-h
Confidence 99875 4555554 78999999999999 778888888999999999999986666554 5568889999999987 7
Q ss_pred cCccCCCCCCccEEEccCCcccCCCccccccCCCCcEEEccCCccc-CCCCccccCCCCCCeEEecCCccccCcCccccc
Q 040206 154 IPQTNAKGCNLTSLRLSGNHLEGPLPPSLINCVNLQFLDVGNNNLS-GPIPECLGNSTRLSFLDVGNNSLSGPIPECLAN 232 (347)
Q Consensus 154 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~-~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~ 232 (347)
+|.....+..|++|.+++|.+.-.-...+..+++|+.|.+++.+-+ ..+|..+..+.+|+.++++.|.+.....-....
T Consensus 165 LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp~vPecly~l 244 (1255)
T KOG0444|consen 165 LPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLPIVPECLYKL 244 (1255)
T ss_pred cCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCCcchHHHhhh
Confidence 8888899999999999999986444445566778888899887543 567889999999999999999988544444555
Q ss_pred cCCcEEEcccCcccccCChhhhcc----------ccccCCCcCccCCCCCcEEEccCCccC-CccchhhhhccCCCEEEc
Q 040206 233 STLEILDMRMNKFSGSLPQNICKK----------LCFGPLPPSLVNCQYLEVLDVGNNQID-DTFLYWLDVLLQLQVLIL 301 (347)
Q Consensus 233 ~~L~~L~L~~~~~~~~~~~~~~~~----------~~~~~l~~~~~~~~~L~~L~L~~n~i~-~~~~~~~~~l~~L~~l~L 301 (347)
.+|+.|+|++|+|+.. .-....+ .++..+|.++.++++|+.|++.+|+++ +..|..++.+..|+.+..
T Consensus 245 ~~LrrLNLS~N~iteL-~~~~~~W~~lEtLNlSrNQLt~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~a 323 (1255)
T KOG0444|consen 245 RNLRRLNLSGNKITEL-NMTEGEWENLETLNLSRNQLTVLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHA 323 (1255)
T ss_pred hhhheeccCcCceeee-eccHHHHhhhhhhccccchhccchHHHhhhHHHHHHHhccCcccccCCccchhhhhhhHHHHh
Confidence 8999999999999842 1111111 355556666666666666666666654 234455666666666666
Q ss_pred cccee
Q 040206 302 RSNRF 306 (347)
Q Consensus 302 ~~n~~ 306 (347)
++|.+
T Consensus 324 anN~L 328 (1255)
T KOG0444|consen 324 ANNKL 328 (1255)
T ss_pred hcccc
Confidence 65554
No 7
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.88 E-value=8.4e-22 Score=183.65 Aligned_cols=262 Identities=27% Similarity=0.250 Sum_probs=206.5
Q ss_pred eEEEecCCCCCCCChhhhcCCCccEEeccCCcccccCChhhhhcCCCcccEEEcCCCcCCCCCCCCCCCCcEEEccCCCC
Q 040206 3 IKTQVKTCNISEFPDILRTQHQLEWLDLSKNQIRGRIPSWMWDIGVHTLQFLILSQNVLTSIDHLPWKNLQYLTLDSNLL 82 (347)
Q Consensus 3 ~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~L~~L~l~~~~~ 82 (347)
..|+++++.++.+|..+. ++|+.|++.+|+++ .+|.. .++|++|++++|.++.++. ..++|+.|++++|.+
T Consensus 204 ~~LdLs~~~LtsLP~~l~--~~L~~L~L~~N~Lt-~LP~l-----p~~Lk~LdLs~N~LtsLP~-lp~sL~~L~Ls~N~L 274 (788)
T PRK15387 204 AVLNVGESGLTTLPDCLP--AHITTLVIPDNNLT-SLPAL-----PPELRTLEVSGNQLTSLPV-LPPGLLELSIFSNPL 274 (788)
T ss_pred cEEEcCCCCCCcCCcchh--cCCCEEEccCCcCC-CCCCC-----CCCCcEEEecCCccCcccC-cccccceeeccCCch
Confidence 578999999999998776 58999999999998 56643 2899999999999998875 357999999999998
Q ss_pred CccCCCCCCCccEEEcccCcccccCCccccCCCCccEEEcccCcccccCCcccCCccccEEECCCCccccccCccCCCCC
Q 040206 83 QGSLPDLPPHMVQLLISNNSLTGEIPSSFCNLSSIQYLNLSNNSLSGQIPQCLGNSTLETLDLGMNNFQGSIPQTNAKGC 162 (347)
Q Consensus 83 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~ 162 (347)
... +..+..|+.|++++|.++ .+|. .+++|+.|++++|.+...+. . ...|+.|++++|.+. .+|.. ..
T Consensus 275 ~~L-p~lp~~L~~L~Ls~N~Lt-~LP~---~p~~L~~LdLS~N~L~~Lp~-l--p~~L~~L~Ls~N~L~-~LP~l---p~ 342 (788)
T PRK15387 275 THL-PALPSGLCKLWIFGNQLT-SLPV---LPPGLQELSVSDNQLASLPA-L--PSELCKLWAYNNQLT-SLPTL---PS 342 (788)
T ss_pred hhh-hhchhhcCEEECcCCccc-cccc---cccccceeECCCCccccCCC-C--cccccccccccCccc-ccccc---cc
Confidence 754 346688999999999988 3443 34789999999999886432 1 346889999999887 45532 35
Q ss_pred CccEEEccCCcccCCCccccccCCCCcEEEccCCcccCCCCccccCCCCCCeEEecCCccccCcCccccccCCcEEEccc
Q 040206 163 NLTSLRLSGNHLEGPLPPSLINCVNLQFLDVGNNNLSGPIPECLGNSTRLSFLDVGNNSLSGPIPECLANSTLEILDMRM 242 (347)
Q Consensus 163 ~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~L~~ 242 (347)
+|+.|++++|+++ .+|.. ..+|+.|++++|.+.. +|.. ..+|+.|++++|.+++.. .. .++|+.|++++
T Consensus 343 ~Lq~LdLS~N~Ls-~LP~l---p~~L~~L~Ls~N~L~~-LP~l---~~~L~~LdLs~N~Lt~LP-~l--~s~L~~LdLS~ 411 (788)
T PRK15387 343 GLQELSVSDNQLA-SLPTL---PSELYKLWAYNNRLTS-LPAL---PSGLKELIVSGNRLTSLP-VL--PSELKELMVSG 411 (788)
T ss_pred ccceEecCCCccC-CCCCC---Ccccceehhhcccccc-Cccc---ccccceEEecCCcccCCC-Cc--ccCCCEEEccC
Confidence 7999999999998 44432 3578889999998874 4543 357999999999988533 22 26899999999
Q ss_pred CcccccCChhhhccccccCCCcCccCCCCCcEEEccCCccCCccchhhhhccCCCEEEcccceeecccCCcc
Q 040206 243 NKFSGSLPQNICKKLCFGPLPPSLVNCQYLEVLDVGNNQIDDTFLYWLDVLLQLQVLILRSNRFWGPIGKLR 314 (347)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~l~L~~n~~~~~~~~~~ 314 (347)
|.+.. +|.. ..+|+.|++++|.++. +|..+..++.|+.|+|++|++.+..+..+
T Consensus 412 N~Lss--------------IP~l---~~~L~~L~Ls~NqLt~-LP~sl~~L~~L~~LdLs~N~Ls~~~~~~L 465 (788)
T PRK15387 412 NRLTS--------------LPML---PSGLLSLSVYRNQLTR-LPESLIHLSSETTVNLEGNPLSERTLQAL 465 (788)
T ss_pred CcCCC--------------CCcc---hhhhhhhhhccCcccc-cChHHhhccCCCeEECCCCCCCchHHHHH
Confidence 99983 4432 2468889999999985 66778899999999999999998877654
No 8
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.88 E-value=2.3e-25 Score=185.25 Aligned_cols=107 Identities=31% Similarity=0.430 Sum_probs=84.8
Q ss_pred CCCccccCCCCCCeEEecCCccccCcCccccccCCcEEEcccCcccccCChhhhcc----------ccccCCCcC-ccCC
Q 040206 201 PIPECLGNSTRLSFLDVGNNSLSGPIPECLANSTLEILDMRMNKFSGSLPQNICKK----------LCFGPLPPS-LVNC 269 (347)
Q Consensus 201 ~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~----------~~~~~l~~~-~~~~ 269 (347)
..|..++.+++|..|++++|.+.+...+......|+.++++.|.|. .+|..+... .+.+.++.. +..+
T Consensus 426 fv~~~l~~l~kLt~L~L~NN~Ln~LP~e~~~lv~Lq~LnlS~NrFr-~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm 504 (565)
T KOG0472|consen 426 FVPLELSQLQKLTFLDLSNNLLNDLPEEMGSLVRLQTLNLSFNRFR-MLPECLYELQTLETLLASNNQIGSVDPSGLKNM 504 (565)
T ss_pred cchHHHHhhhcceeeecccchhhhcchhhhhhhhhheecccccccc-cchHHHhhHHHHHHHHhccccccccChHHhhhh
Confidence 4455667888899999999888866666666667999999999887 566655442 566677665 7889
Q ss_pred CCCcEEEccCCccCCccchhhhhccCCCEEEcccceeecc
Q 040206 270 QYLEVLDVGNNQIDDTFLYWLDVLLQLQVLILRSNRFWGP 309 (347)
Q Consensus 270 ~~L~~L~L~~n~i~~~~~~~~~~l~~L~~l~L~~n~~~~~ 309 (347)
.+|..||+.+|.+.. +|..++.|.+|++|+++||++...
T Consensus 505 ~nL~tLDL~nNdlq~-IPp~LgnmtnL~hLeL~gNpfr~P 543 (565)
T KOG0472|consen 505 RNLTTLDLQNNDLQQ-IPPILGNMTNLRHLELDGNPFRQP 543 (565)
T ss_pred hhcceeccCCCchhh-CChhhccccceeEEEecCCccCCC
Confidence 999999999999975 566689999999999999999843
No 9
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.86 E-value=1.6e-24 Score=180.25 Aligned_cols=236 Identities=22% Similarity=0.271 Sum_probs=184.9
Q ss_pred ceEEEecCCCCCCCChhhhcCCCccEEeccCCcccccCChhhhhcCCCcccEEEcCCCcCCCCCC--CCCCCCcEEEccC
Q 040206 2 TIKTQVKTCNISEFPDILRTQHQLEWLDLSKNQIRGRIPSWMWDIGVHTLQFLILSQNVLTSIDH--LPWKNLQYLTLDS 79 (347)
Q Consensus 2 l~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~--~~~~~L~~L~l~~ 79 (347)
++.+++.++.+.+.|++++.+..++.++.++|++. .+|..+... ..|+++++++|.+..++. ..+..|+.++-.+
T Consensus 70 l~vl~~~~n~l~~lp~aig~l~~l~~l~vs~n~ls-~lp~~i~s~--~~l~~l~~s~n~~~el~~~i~~~~~l~dl~~~~ 146 (565)
T KOG0472|consen 70 LTVLNVHDNKLSQLPAAIGELEALKSLNVSHNKLS-ELPEQIGSL--ISLVKLDCSSNELKELPDSIGRLLDLEDLDATN 146 (565)
T ss_pred eeEEEeccchhhhCCHHHHHHHHHHHhhcccchHh-hccHHHhhh--hhhhhhhccccceeecCchHHHHhhhhhhhccc
Confidence 45677788888888888888888888888888887 788888766 888888888888887776 5566778888888
Q ss_pred CCCCccCCCCC--CCccEEEcccCcccccCCccccCCCCccEEEcccCcccccCCcccCCccccEEECCCCccccccCcc
Q 040206 80 NLLQGSLPDLP--PHMVQLLISNNSLTGEIPSSFCNLSSIQYLNLSNNSLSGQIPQCLGNSTLETLDLGMNNFQGSIPQT 157 (347)
Q Consensus 80 ~~~~~~~~~~~--~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~ 157 (347)
|++...+.... .++..+++.+|.++...+..+. |+.|++++...|.+...++...++.+|.-|++..|.+. .+| .
T Consensus 147 N~i~slp~~~~~~~~l~~l~~~~n~l~~l~~~~i~-m~~L~~ld~~~N~L~tlP~~lg~l~~L~~LyL~~Nki~-~lP-e 223 (565)
T KOG0472|consen 147 NQISSLPEDMVNLSKLSKLDLEGNKLKALPENHIA-MKRLKHLDCNSNLLETLPPELGGLESLELLYLRRNKIR-FLP-E 223 (565)
T ss_pred cccccCchHHHHHHHHHHhhccccchhhCCHHHHH-HHHHHhcccchhhhhcCChhhcchhhhHHHHhhhcccc-cCC-C
Confidence 88876665553 6778888888888855444444 88899999888888877777767778888888888886 666 6
Q ss_pred CCCCCCccEEEccCCcccCCCccc-cccCCCCcEEEccCCcccCCCCccccCCCCCCeEEecCCccccCcCccccccCCc
Q 040206 158 NAKGCNLTSLRLSGNHLEGPLPPS-LINCVNLQFLDVGNNNLSGPIPECLGNSTRLSFLDVGNNSLSGPIPECLANSTLE 236 (347)
Q Consensus 158 ~~~~~~L~~L~l~~~~~~~~~~~~-l~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~ 236 (347)
|..+..|.+++++.|++. ..|.. ..++.++..||+.+|.+. ..|..+.-+++|..|++++|.+++........ +|+
T Consensus 224 f~gcs~L~Elh~g~N~i~-~lpae~~~~L~~l~vLDLRdNklk-e~Pde~clLrsL~rLDlSNN~is~Lp~sLgnl-hL~ 300 (565)
T KOG0472|consen 224 FPGCSLLKELHVGENQIE-MLPAEHLKHLNSLLVLDLRDNKLK-EVPDEICLLRSLERLDLSNNDISSLPYSLGNL-HLK 300 (565)
T ss_pred CCccHHHHHHHhcccHHH-hhHHHHhcccccceeeeccccccc-cCchHHHHhhhhhhhcccCCccccCCcccccc-eee
Confidence 778888999999999887 44444 448889999999999998 67888888999999999999998655544443 777
Q ss_pred EEEcccCccc
Q 040206 237 ILDMRMNKFS 246 (347)
Q Consensus 237 ~L~L~~~~~~ 246 (347)
.|.+.+|.+.
T Consensus 301 ~L~leGNPlr 310 (565)
T KOG0472|consen 301 FLALEGNPLR 310 (565)
T ss_pred ehhhcCCchH
Confidence 7777777653
No 10
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.85 E-value=5.6e-20 Score=183.22 Aligned_cols=281 Identities=20% Similarity=0.191 Sum_probs=167.2
Q ss_pred CceEEEecCCCCCCCChhhhcCCCccEEeccCCcccccCChhhhhcCCCcccEEEcCCC-cCCCCCC-CCCCCCcEEEcc
Q 040206 1 KTIKTQVKTCNISEFPDILRTQHQLEWLDLSKNQIRGRIPSWMWDIGVHTLQFLILSQN-VLTSIDH-LPWKNLQYLTLD 78 (347)
Q Consensus 1 ~l~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~-~l~~~~~-~~~~~L~~L~l~ 78 (347)
+|+.|.+.++.++.+|..+ ...+|+.|++.++++. .++..+.. +++|+.|+++++ .+..++. ..+++|+.|+++
T Consensus 590 ~Lr~L~~~~~~l~~lP~~f-~~~~L~~L~L~~s~l~-~L~~~~~~--l~~Lk~L~Ls~~~~l~~ip~ls~l~~Le~L~L~ 665 (1153)
T PLN03210 590 KLRLLRWDKYPLRCMPSNF-RPENLVKLQMQGSKLE-KLWDGVHS--LTGLRNIDLRGSKNLKEIPDLSMATNLETLKLS 665 (1153)
T ss_pred ccEEEEecCCCCCCCCCcC-CccCCcEEECcCcccc-cccccccc--CCCCCEEECCCCCCcCcCCccccCCcccEEEec
Confidence 3677788888888888766 4678888888888776 55555543 378888888765 3555554 456778888888
Q ss_pred CCCCCccCCCC---CCCccEEEcccCcccccCCccccCCCCccEEEcccCcccccCCcccCCccccEEECCCCccccccC
Q 040206 79 SNLLQGSLPDL---PPHMVQLLISNNSLTGEIPSSFCNLSSIQYLNLSNNSLSGQIPQCLGNSTLETLDLGMNNFQGSIP 155 (347)
Q Consensus 79 ~~~~~~~~~~~---~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~ 155 (347)
+|......+.. +++|+.|++++|..-..+|..+ ++++|+.|++++|......+.. ..+|+.|+++++.+. .+|
T Consensus 666 ~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l~sL~~L~Lsgc~~L~~~p~~--~~nL~~L~L~~n~i~-~lP 741 (1153)
T PLN03210 666 DCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-NLKSLYRLNLSGCSRLKSFPDI--STNISWLDLDETAIE-EFP 741 (1153)
T ss_pred CCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC-CCCCCCEEeCCCCCCccccccc--cCCcCeeecCCCccc-ccc
Confidence 77644333322 3677888887764333445443 5777777777777544333322 246677777776654 333
Q ss_pred ccCCCCC-------------------------------CccEEEccCCcccCCCccccccCCCCcEEEccCCcccCCCCc
Q 040206 156 QTNAKGC-------------------------------NLTSLRLSGNHLEGPLPPSLINCVNLQFLDVGNNNLSGPIPE 204 (347)
Q Consensus 156 ~~~~~~~-------------------------------~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~ 204 (347)
..+ .++ +|+.|++++|......|..++.+++|+.|++++|...+.+|.
T Consensus 742 ~~~-~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~ 820 (1153)
T PLN03210 742 SNL-RLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPT 820 (1153)
T ss_pred ccc-cccccccccccccchhhccccccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCC
Confidence 322 233 455555555544334455555555555555555533223333
Q ss_pred cccCCCCCCeEEecCCccccCcCccccccCCcEEEcccCcccccCChhhhccccccCCCcCccCCCCCcEEEccCCccCC
Q 040206 205 CLGNSTRLSFLDVGNNSLSGPIPECLANSTLEILDMRMNKFSGSLPQNICKKLCFGPLPPSLVNCQYLEVLDVGNNQIDD 284 (347)
Q Consensus 205 ~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~i~~ 284 (347)
.. .+++|+.|++++|......+.. ..+|+.|++++|.+. .+|.++..+++|+.|++++|.--.
T Consensus 821 ~~-~L~sL~~L~Ls~c~~L~~~p~~--~~nL~~L~Ls~n~i~--------------~iP~si~~l~~L~~L~L~~C~~L~ 883 (1153)
T PLN03210 821 GI-NLESLESLDLSGCSRLRTFPDI--STNISDLNLSRTGIE--------------EVPWWIEKFSNLSFLDMNGCNNLQ 883 (1153)
T ss_pred CC-CccccCEEECCCCCcccccccc--ccccCEeECCCCCCc--------------cChHHHhcCCCCCEEECCCCCCcC
Confidence 33 4555555555555332222221 135556666665555 466667778888888888864433
Q ss_pred ccchhhhhccCCCEEEcccceee
Q 040206 285 TFLYWLDVLLQLQVLILRSNRFW 307 (347)
Q Consensus 285 ~~~~~~~~l~~L~~l~L~~n~~~ 307 (347)
..+..+..+++|+.+++++|+-.
T Consensus 884 ~l~~~~~~L~~L~~L~l~~C~~L 906 (1153)
T PLN03210 884 RVSLNISKLKHLETVDFSDCGAL 906 (1153)
T ss_pred ccCcccccccCCCeeecCCCccc
Confidence 45555667788888888888633
No 11
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.85 E-value=1.2e-19 Score=180.85 Aligned_cols=294 Identities=19% Similarity=0.245 Sum_probs=218.5
Q ss_pred ceEEEecCCC------CC-CCChhhhcCC-CccEEeccCCcccccCChhhhhcCCCcccEEEcCCCcCCCCCC--CCCCC
Q 040206 2 TIKTQVKTCN------IS-EFPDILRTQH-QLEWLDLSKNQIRGRIPSWMWDIGVHTLQFLILSQNVLTSIDH--LPWKN 71 (347)
Q Consensus 2 l~~l~l~~~~------~~-~~~~~~~~~~-~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~--~~~~~ 71 (347)
|+.|.+..+. .. .+|..+..++ +|+.|.+.++.+. .+|..+ ...+|+.|++.++.+..+.. ..+++
T Consensus 560 L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~-~lP~~f---~~~~L~~L~L~~s~l~~L~~~~~~l~~ 635 (1153)
T PLN03210 560 LLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLR-CMPSNF---RPENLVKLQMQGSKLEKLWDGVHSLTG 635 (1153)
T ss_pred ccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCC-CCCCcC---CccCCcEEECcCccccccccccccCCC
Confidence 5667775442 22 5777777775 6999999999887 788777 34899999999999887755 57899
Q ss_pred CcEEEccCCCCCccCCCC--CCCccEEEcccCcccccCCccccCCCCccEEEcccCcccccCCcccCCccccEEECCCCc
Q 040206 72 LQYLTLDSNLLQGSLPDL--PPHMVQLLISNNSLTGEIPSSFCNLSSIQYLNLSNNSLSGQIPQCLGNSTLETLDLGMNN 149 (347)
Q Consensus 72 L~~L~l~~~~~~~~~~~~--~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~ 149 (347)
|+.|+++++......+.. +++|+.|++++|......|..+.++++|+.|++++|......|....+.+|+.|++++|.
T Consensus 636 Lk~L~Ls~~~~l~~ip~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i~l~sL~~L~Lsgc~ 715 (1153)
T PLN03210 636 LRNIDLRGSKNLKEIPDLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGINLKSLYRLNLSGCS 715 (1153)
T ss_pred CCEEECCCCCCcCcCCccccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcCCCCCCCEEeCCCCC
Confidence 999999987644333333 489999999998765578888999999999999998655455555577899999999987
Q ss_pred cccccCccCCCCCCccEEEccCCcccCCCcccc------------------------------ccCCCCcEEEccCCccc
Q 040206 150 FQGSIPQTNAKGCNLTSLRLSGNHLEGPLPPSL------------------------------INCVNLQFLDVGNNNLS 199 (347)
Q Consensus 150 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l------------------------------~~~~~L~~L~l~~n~~~ 199 (347)
.....|.. ..+|++|+++++.+. .+|..+ ..+++|+.|++++|...
T Consensus 716 ~L~~~p~~---~~nL~~L~L~~n~i~-~lP~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l 791 (1153)
T PLN03210 716 RLKSFPDI---STNISWLDLDETAIE-EFPSNLRLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSL 791 (1153)
T ss_pred Cccccccc---cCCcCeeecCCCccc-cccccccccccccccccccchhhccccccccchhhhhccccchheeCCCCCCc
Confidence 54455543 467899999998865 333221 11346777888877665
Q ss_pred CCCCccccCCCCCCeEEecCCccccCcCccccccCCcEEEcccCcccccCChhhhccccccCCCcCccCCCCCcEEEccC
Q 040206 200 GPIPECLGNSTRLSFLDVGNNSLSGPIPECLANSTLEILDMRMNKFSGSLPQNICKKLCFGPLPPSLVNCQYLEVLDVGN 279 (347)
Q Consensus 200 ~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~ 279 (347)
..+|..++.+++|+.|++++|...+..+.....++|+.|++++|..... +|.. ..+|+.|++++
T Consensus 792 ~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~~L~sL~~L~Ls~c~~L~~-------------~p~~---~~nL~~L~Ls~ 855 (1153)
T PLN03210 792 VELPSSIQNLHKLEHLEIENCINLETLPTGINLESLESLDLSGCSRLRT-------------FPDI---STNISDLNLSR 855 (1153)
T ss_pred cccChhhhCCCCCCEEECCCCCCcCeeCCCCCccccCEEECCCCCcccc-------------cccc---ccccCEeECCC
Confidence 5677888888889999988876444555555567888899888754432 2222 35799999999
Q ss_pred CccCCccchhhhhccCCCEEEcccceeecccCCccccceee
Q 040206 280 NQIDDTFLYWLDVLLQLQVLILRSNRFWGPIGKLRSRWSGH 320 (347)
Q Consensus 280 n~i~~~~~~~~~~l~~L~~l~L~~n~~~~~~~~~~~~~~~~ 320 (347)
|.+.. .|..+..+++|+.|++++|+-...+|.....+..+
T Consensus 856 n~i~~-iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L 895 (1153)
T PLN03210 856 TGIEE-VPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHL 895 (1153)
T ss_pred CCCcc-ChHHHhcCCCCCEEECCCCCCcCccCcccccccCC
Confidence 99975 66778899999999999988766677655544433
No 12
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.84 E-value=6.6e-20 Score=171.08 Aligned_cols=245 Identities=27% Similarity=0.300 Sum_probs=193.3
Q ss_pred CceEEEecCCCCCCCChhhhcCCCccEEeccCCcccccCChhhhhcCCCcccEEEcCCCcCCCCCCCCCCCCcEEEccCC
Q 040206 1 KTIKTQVKTCNISEFPDILRTQHQLEWLDLSKNQIRGRIPSWMWDIGVHTLQFLILSQNVLTSIDHLPWKNLQYLTLDSN 80 (347)
Q Consensus 1 ~l~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~L~~L~l~~~ 80 (347)
.++.|++.+|+++.+|.. .++|++|++++|+++ .+|... ++|+.|++++|.++.++. .+.+|+.|++++|
T Consensus 223 ~L~~L~L~~N~Lt~LP~l---p~~Lk~LdLs~N~Lt-sLP~lp-----~sL~~L~Ls~N~L~~Lp~-lp~~L~~L~Ls~N 292 (788)
T PRK15387 223 HITTLVIPDNNLTSLPAL---PPELRTLEVSGNQLT-SLPVLP-----PGLLELSIFSNPLTHLPA-LPSGLCKLWIFGN 292 (788)
T ss_pred CCCEEEccCCcCCCCCCC---CCCCcEEEecCCccC-cccCcc-----cccceeeccCCchhhhhh-chhhcCEEECcCC
Confidence 368899999999998863 589999999999998 566432 789999999999988776 3478999999999
Q ss_pred CCCccCCCCCCCccEEEcccCcccccCCccccCCCCccEEEcccCcccccCCcccCCccccEEECCCCccccccCccCCC
Q 040206 81 LLQGSLPDLPPHMVQLLISNNSLTGEIPSSFCNLSSIQYLNLSNNSLSGQIPQCLGNSTLETLDLGMNNFQGSIPQTNAK 160 (347)
Q Consensus 81 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~ 160 (347)
++...+ ..+++|+.|++++|.+.. ++.. ..+|+.|++.+|.+...+ .. ..+|+.|++++|.+. .+|..
T Consensus 293 ~Lt~LP-~~p~~L~~LdLS~N~L~~-Lp~l---p~~L~~L~Ls~N~L~~LP-~l--p~~Lq~LdLS~N~Ls-~LP~l--- 360 (788)
T PRK15387 293 QLTSLP-VLPPGLQELSVSDNQLAS-LPAL---PSELCKLWAYNNQLTSLP-TL--PSGLQELSVSDNQLA-SLPTL--- 360 (788)
T ss_pred cccccc-ccccccceeECCCCcccc-CCCC---cccccccccccCcccccc-cc--ccccceEecCCCccC-CCCCC---
Confidence 998654 466899999999999984 3432 246888999999887543 21 248999999999987 45543
Q ss_pred CCCccEEEccCCcccCCCccccccCCCCcEEEccCCcccCCCCccccCCCCCCeEEecCCccccCcCccccccCCcEEEc
Q 040206 161 GCNLTSLRLSGNHLEGPLPPSLINCVNLQFLDVGNNNLSGPIPECLGNSTRLSFLDVGNNSLSGPIPECLANSTLEILDM 240 (347)
Q Consensus 161 ~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~L 240 (347)
..+|+.|++++|.++ .+|.. ..+|+.|++++|.+.+ +|.. .++|+.|++++|.+++. +.. ..+|+.|++
T Consensus 361 p~~L~~L~Ls~N~L~-~LP~l---~~~L~~LdLs~N~Lt~-LP~l---~s~L~~LdLS~N~LssI-P~l--~~~L~~L~L 429 (788)
T PRK15387 361 PSELYKLWAYNNRLT-SLPAL---PSGLKELIVSGNRLTS-LPVL---PSELKELMVSGNRLTSL-PML--PSGLLSLSV 429 (788)
T ss_pred Ccccceehhhccccc-cCccc---ccccceEEecCCcccC-CCCc---ccCCCEEEccCCcCCCC-Ccc--hhhhhhhhh
Confidence 357888999999988 44533 3579999999999984 4433 35799999999999853 332 257899999
Q ss_pred ccCcccccCChhhhccccccCCCcCccCCCCCcEEEccCCccCCccchhhhh
Q 040206 241 RMNKFSGSLPQNICKKLCFGPLPPSLVNCQYLEVLDVGNNQIDDTFLYWLDV 292 (347)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~ 292 (347)
++|.++ .+|..+..+++|+.++|++|.+++..+..+..
T Consensus 430 s~NqLt--------------~LP~sl~~L~~L~~LdLs~N~Ls~~~~~~L~~ 467 (788)
T PRK15387 430 YRNQLT--------------RLPESLIHLSSETTVNLEGNPLSERTLQALRE 467 (788)
T ss_pred ccCccc--------------ccChHHhhccCCCeEECCCCCCCchHHHHHHH
Confidence 999998 46667888999999999999999876665543
No 13
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.84 E-value=1.6e-20 Score=176.04 Aligned_cols=249 Identities=24% Similarity=0.349 Sum_probs=137.5
Q ss_pred ceEEEecCCCCCCCChhhhcCCCccEEeccCCcccccCChhhhhcCCCcccEEEcCCCcCCCCCCCCCCCCcEEEccCCC
Q 040206 2 TIKTQVKTCNISEFPDILRTQHQLEWLDLSKNQIRGRIPSWMWDIGVHTLQFLILSQNVLTSIDHLPWKNLQYLTLDSNL 81 (347)
Q Consensus 2 l~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~L~~L~l~~~~ 81 (347)
.+.|+++++.++.+|..+. ++|+.|++++|+++ .+|..+. ++|++|++++|.++.++.....+|+.|++++|.
T Consensus 180 ~~~L~L~~~~LtsLP~~Ip--~~L~~L~Ls~N~Lt-sLP~~l~----~nL~~L~Ls~N~LtsLP~~l~~~L~~L~Ls~N~ 252 (754)
T PRK15370 180 KTELRLKILGLTTIPACIP--EQITTLILDNNELK-SLPENLQ----GNIKTLYANSNQLTSIPATLPDTIQEMELSINR 252 (754)
T ss_pred ceEEEeCCCCcCcCCcccc--cCCcEEEecCCCCC-cCChhhc----cCCCEEECCCCccccCChhhhccccEEECcCCc
Confidence 3456666666666665443 46777777777766 4555442 467777777777766655444567777777776
Q ss_pred CCccCCCCCCCccEEEcccCcccccCCccccCCCCccEEEcccCcccccCCcccCCccccEEECCCCccccccCccCCCC
Q 040206 82 LQGSLPDLPPHMVQLLISNNSLTGEIPSSFCNLSSIQYLNLSNNSLSGQIPQCLGNSTLETLDLGMNNFQGSIPQTNAKG 161 (347)
Q Consensus 82 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~ 161 (347)
+...+...+.+|+.|++++|.+. .+|..+. ++|+.|++++|.+...+... ..+|+.|++++|.+. ..|..+ .
T Consensus 253 L~~LP~~l~s~L~~L~Ls~N~L~-~LP~~l~--~sL~~L~Ls~N~Lt~LP~~l--p~sL~~L~Ls~N~Lt-~LP~~l--~ 324 (754)
T PRK15370 253 ITELPERLPSALQSLDLFHNKIS-CLPENLP--EELRYLSVYDNSIRTLPAHL--PSGITHLNVQSNSLT-ALPETL--P 324 (754)
T ss_pred cCcCChhHhCCCCEEECcCCccC-ccccccC--CCCcEEECCCCccccCcccc--hhhHHHHHhcCCccc-cCCccc--c
Confidence 66554444556677777766666 3344332 35666666666665432211 135666666666655 233322 2
Q ss_pred CCccEEEccCCcccCCCccccccCCCCcEEEccCCcccCCCCccccCCCCCCeEEecCCccccCcCccccccCCcEEEcc
Q 040206 162 CNLTSLRLSGNHLEGPLPPSLINCVNLQFLDVGNNNLSGPIPECLGNSTRLSFLDVGNNSLSGPIPECLANSTLEILDMR 241 (347)
Q Consensus 162 ~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~L~ 241 (347)
++|+.|++++|.++. +|..+ .++|+.|++++|.+. .+|..+ .++|+.|++++|.++....... ..|+.|+++
T Consensus 325 ~sL~~L~Ls~N~Lt~-LP~~l--~~sL~~L~Ls~N~L~-~LP~~l--p~~L~~LdLs~N~Lt~LP~~l~--~sL~~LdLs 396 (754)
T PRK15370 325 PGLKTLEAGENALTS-LPASL--PPELQVLDVSKNQIT-VLPETL--PPTITTLDVSRNALTNLPENLP--AALQIMQAS 396 (754)
T ss_pred ccceeccccCCcccc-CChhh--cCcccEEECCCCCCC-cCChhh--cCCcCEEECCCCcCCCCCHhHH--HHHHHHhhc
Confidence 456666666666552 33333 246666666666655 234333 2456666666666653322211 246666666
Q ss_pred cCcccccCChhhhccccccCCCcCccCCCCCcEEEccCCccC
Q 040206 242 MNKFSGSLPQNICKKLCFGPLPPSLVNCQYLEVLDVGNNQID 283 (347)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~i~ 283 (347)
+|.+. .+|. .+|.....++.+..+++.+|.+.
T Consensus 397 ~N~L~-~LP~---------sl~~~~~~~~~l~~L~L~~Npls 428 (754)
T PRK15370 397 RNNLV-RLPE---------SLPHFRGEGPQPTRIIVEYNPFS 428 (754)
T ss_pred cCCcc-cCch---------hHHHHhhcCCCccEEEeeCCCcc
Confidence 66665 2333 12223334455666666666654
No 14
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.82 E-value=1.2e-21 Score=178.69 Aligned_cols=311 Identities=27% Similarity=0.283 Sum_probs=187.4
Q ss_pred CceEEEecCCCCCCCChhhhcCCCccEEeccCCcccccCChhhhhcCCCcccEEEcCCCcCCCCCC--CCCCCCcEEEcc
Q 040206 1 KTIKTQVKTCNISEFPDILRTQHQLEWLDLSKNQIRGRIPSWMWDIGVHTLQFLILSQNVLTSIDH--LPWKNLQYLTLD 78 (347)
Q Consensus 1 ~l~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~--~~~~~L~~L~l~ 78 (347)
||+.|+++++.+..+|..+..+.+|+.|+++.|.+. .+|.....+ .+|+++.|.+|.+...+. ..+++|++|+++
T Consensus 46 ~L~~l~lsnn~~~~fp~~it~l~~L~~ln~s~n~i~-~vp~s~~~~--~~l~~lnL~~n~l~~lP~~~~~lknl~~LdlS 122 (1081)
T KOG0618|consen 46 KLKSLDLSNNQISSFPIQITLLSHLRQLNLSRNYIR-SVPSSCSNM--RNLQYLNLKNNRLQSLPASISELKNLQYLDLS 122 (1081)
T ss_pred eeEEeeccccccccCCchhhhHHHHhhcccchhhHh-hCchhhhhh--hcchhheeccchhhcCchhHHhhhcccccccc
Confidence 477889999999999988888999999999888887 777666655 889999999988877775 567888999999
Q ss_pred CCCCCccCCCC--CC-------------------CccEEEcccCcccccCCccccCCCCccEEEcccCcccccCCc----
Q 040206 79 SNLLQGSLPDL--PP-------------------HMVQLLISNNSLTGEIPSSFCNLSSIQYLNLSNNSLSGQIPQ---- 133 (347)
Q Consensus 79 ~~~~~~~~~~~--~~-------------------~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~---- 133 (347)
+|.+...+... +. .++.+++..+.+...++..+..+.. .++++.|.+......
T Consensus 123 ~N~f~~~Pl~i~~lt~~~~~~~s~N~~~~~lg~~~ik~~~l~~n~l~~~~~~~i~~l~~--~ldLr~N~~~~~dls~~~~ 200 (1081)
T KOG0618|consen 123 FNHFGPIPLVIEVLTAEEELAASNNEKIQRLGQTSIKKLDLRLNVLGGSFLIDIYNLTH--QLDLRYNEMEVLDLSNLAN 200 (1081)
T ss_pred hhccCCCchhHHhhhHHHHHhhhcchhhhhhccccchhhhhhhhhcccchhcchhhhhe--eeecccchhhhhhhhhccc
Confidence 88876433222 11 2334444444443333333333333 355555544311000
Q ss_pred --------------ccCCccccEEECCCCccccccCccCCCCCCccEEEccCCcccCCCccccccCCCCcEEEccCCccc
Q 040206 134 --------------CLGNSTLETLDLGMNNFQGSIPQTNAKGCNLTSLRLSGNHLEGPLPPSLINCVNLQFLDVGNNNLS 199 (347)
Q Consensus 134 --------------~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~ 199 (347)
...-++++.|+.+.|.+....+ -....++++++++.+.+. ..|.++..+.+|+.++...|.+.
T Consensus 201 l~~l~c~rn~ls~l~~~g~~l~~L~a~~n~l~~~~~--~p~p~nl~~~dis~n~l~-~lp~wi~~~~nle~l~~n~N~l~ 277 (1081)
T KOG0618|consen 201 LEVLHCERNQLSELEISGPSLTALYADHNPLTTLDV--HPVPLNLQYLDISHNNLS-NLPEWIGACANLEALNANHNRLV 277 (1081)
T ss_pred hhhhhhhhcccceEEecCcchheeeeccCcceeecc--ccccccceeeecchhhhh-cchHHHHhcccceEecccchhHH
Confidence 0011345555555555442111 112346777777777766 45577777777777777777664
Q ss_pred CCCCccccCCCCCCeEEecCCccccCcCccccccCCcEEEcccCcccccCChhhhcc-----------------------
Q 040206 200 GPIPECLGNSTRLSFLDVGNNSLSGPIPECLANSTLEILDMRMNKFSGSLPQNICKK----------------------- 256 (347)
Q Consensus 200 ~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~----------------------- 256 (347)
..|..+..+++|+.+.+..|.+.-..+..-....|+.|+|..|.+.. .|+.+...
T Consensus 278 -~lp~ri~~~~~L~~l~~~~nel~yip~~le~~~sL~tLdL~~N~L~~-lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e 355 (1081)
T KOG0618|consen 278 -ALPLRISRITSLVSLSAAYNELEYIPPFLEGLKSLRTLDLQSNNLPS-LPDNFLAVLNASLNTLNVSSNKLSTLPSYEE 355 (1081)
T ss_pred -hhHHHHhhhhhHHHHHhhhhhhhhCCCcccccceeeeeeehhccccc-cchHHHhhhhHHHHHHhhhhccccccccccc
Confidence 33344444444444444444444333222223444555555444442 11111000
Q ss_pred --------------ccccCCCcCccCCCCCcEEEccCCccCCccchhhhhccCCCEEEcccceeecccCCccccceeeee
Q 040206 257 --------------LCFGPLPPSLVNCQYLEVLDVGNNQIDDTFLYWLDVLLQLQVLILRSNRFWGPIGKLRSRWSGHFI 322 (347)
Q Consensus 257 --------------~~~~~l~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~l~L~~n~~~~~~~~~~~~~~~~~~ 322 (347)
.......+.+.++++|+.|+|++|++...+...+.++..|++|+||||.++. +|+..+.+..+..
T Consensus 356 ~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~~-Lp~tva~~~~L~t 434 (1081)
T KOG0618|consen 356 NNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLTT-LPDTVANLGRLHT 434 (1081)
T ss_pred hhhHHHHHHHHhcCcccccchhhhccccceeeeeecccccccCCHHHHhchHHhHHHhcccchhhh-hhHHHHhhhhhHH
Confidence 0011233467889999999999999998888889999999999999999976 4455444444433
No 15
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.82 E-value=1.9e-21 Score=177.43 Aligned_cols=212 Identities=25% Similarity=0.269 Sum_probs=137.4
Q ss_pred CCccEEEcccCcccccCCccccCCCCccEEEcccCcccccCCcccCCccccEEECCCCccccccCccCCCCCCccEEEcc
Q 040206 91 PHMVQLLISNNSLTGEIPSSFCNLSSIQYLNLSNNSLSGQIPQCLGNSTLETLDLGMNNFQGSIPQTNAKGCNLTSLRLS 170 (347)
Q Consensus 91 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~ 170 (347)
.++++++++++++. ..|+.+..+.+|+.+....|.+...+...+...+|+.+.+..|.+. ..|........|++|++.
T Consensus 241 ~nl~~~dis~n~l~-~lp~wi~~~~nle~l~~n~N~l~~lp~ri~~~~~L~~l~~~~nel~-yip~~le~~~sL~tLdL~ 318 (1081)
T KOG0618|consen 241 LNLQYLDISHNNLS-NLPEWIGACANLEALNANHNRLVALPLRISRITSLVSLSAAYNELE-YIPPFLEGLKSLRTLDLQ 318 (1081)
T ss_pred ccceeeecchhhhh-cchHHHHhcccceEecccchhHHhhHHHHhhhhhHHHHHhhhhhhh-hCCCcccccceeeeeeeh
Confidence 66777888887777 4557777788888888888777655555555566666666666665 556666666677777777
Q ss_pred CCcccCCCcccc-c-------------------------cCCCCcEEEccCCcccCCCCccccCCCCCCeEEecCCcccc
Q 040206 171 GNHLEGPLPPSL-I-------------------------NCVNLQFLDVGNNNLSGPIPECLGNSTRLSFLDVGNNSLSG 224 (347)
Q Consensus 171 ~~~~~~~~~~~l-~-------------------------~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~~~~~~ 224 (347)
.|.+... |..+ . ..+.|+.|.+.+|.+++.....+..+..|+.|++++|.+..
T Consensus 319 ~N~L~~l-p~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~ 397 (1081)
T KOG0618|consen 319 SNNLPSL-PDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNS 397 (1081)
T ss_pred hcccccc-chHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeeccccccc
Confidence 6665422 1111 0 12335555556666655444556667777777777777764
Q ss_pred CcCccccc-cCCcEEEcccCcccccCChhhhcc----------ccccCCCcCccCCCCCcEEEccCCccCCccchhhhhc
Q 040206 225 PIPECLAN-STLEILDMRMNKFSGSLPQNICKK----------LCFGPLPPSLVNCQYLEVLDVGNNQIDDTFLYWLDVL 293 (347)
Q Consensus 225 ~~~~~~~~-~~L~~L~L~~~~~~~~~~~~~~~~----------~~~~~l~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l 293 (347)
.....+.. +.|+.|+|++|+++ .+|..+... .++..+| .+.++++|+.+|++.|.++..........
T Consensus 398 fpas~~~kle~LeeL~LSGNkL~-~Lp~tva~~~~L~tL~ahsN~l~~fP-e~~~l~qL~~lDlS~N~L~~~~l~~~~p~ 475 (1081)
T KOG0618|consen 398 FPASKLRKLEELEELNLSGNKLT-TLPDTVANLGRLHTLRAHSNQLLSFP-ELAQLPQLKVLDLSCNNLSEVTLPEALPS 475 (1081)
T ss_pred CCHHHHhchHHhHHHhcccchhh-hhhHHHHhhhhhHHHhhcCCceeech-hhhhcCcceEEecccchhhhhhhhhhCCC
Confidence 44433333 66777777777776 344444222 3333556 77889999999999999986444433444
Q ss_pred cCCCEEEcccceee
Q 040206 294 LQLQVLILRSNRFW 307 (347)
Q Consensus 294 ~~L~~l~L~~n~~~ 307 (347)
|.|++||++||...
T Consensus 476 p~LkyLdlSGN~~l 489 (1081)
T KOG0618|consen 476 PNLKYLDLSGNTRL 489 (1081)
T ss_pred cccceeeccCCccc
Confidence 89999999999964
No 16
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.81 E-value=2.1e-19 Score=168.53 Aligned_cols=248 Identities=28% Similarity=0.378 Sum_probs=193.2
Q ss_pred CCccEEeccCCcccccCChhhhhcCCCcccEEEcCCCcCCCCCCCCCCCCcEEEccCCCCCccCCCCCCCccEEEcccCc
Q 040206 23 HQLEWLDLSKNQIRGRIPSWMWDIGVHTLQFLILSQNVLTSIDHLPWKNLQYLTLDSNLLQGSLPDLPPHMVQLLISNNS 102 (347)
Q Consensus 23 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~L~~L~l~~~~ 102 (347)
.+...|++++++++ .+|..+. +.|+.|++++|.++.++...+.+|++|++++|.+...+...+++|+.|++++|.
T Consensus 178 ~~~~~L~L~~~~Lt-sLP~~Ip----~~L~~L~Ls~N~LtsLP~~l~~nL~~L~Ls~N~LtsLP~~l~~~L~~L~Ls~N~ 252 (754)
T PRK15370 178 NNKTELRLKILGLT-TIPACIP----EQITTLILDNNELKSLPENLQGNIKTLYANSNQLTSIPATLPDTIQEMELSINR 252 (754)
T ss_pred cCceEEEeCCCCcC-cCCcccc----cCCcEEEecCCCCCcCChhhccCCCEEECCCCccccCChhhhccccEEECcCCc
Confidence 56789999999998 6776652 679999999999999988777899999999999997766677899999999999
Q ss_pred ccccCCccccCCCCccEEEcccCcccccCCcccCCccccEEECCCCccccccCccCCCCCCccEEEccCCcccCCCcccc
Q 040206 103 LTGEIPSSFCNLSSIQYLNLSNNSLSGQIPQCLGNSTLETLDLGMNNFQGSIPQTNAKGCNLTSLRLSGNHLEGPLPPSL 182 (347)
Q Consensus 103 ~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l 182 (347)
+. .+|..+. .+|+.|++++|.+...+.. + ..+|+.|++++|.+. .+|..+. +.|+.|++++|.++ ..|..+
T Consensus 253 L~-~LP~~l~--s~L~~L~Ls~N~L~~LP~~-l-~~sL~~L~Ls~N~Lt-~LP~~lp--~sL~~L~Ls~N~Lt-~LP~~l 323 (754)
T PRK15370 253 IT-ELPERLP--SALQSLDLFHNKISCLPEN-L-PEELRYLSVYDNSIR-TLPAHLP--SGITHLNVQSNSLT-ALPETL 323 (754)
T ss_pred cC-cCChhHh--CCCCEEECcCCccCccccc-c-CCCCcEEECCCCccc-cCcccch--hhHHHHHhcCCccc-cCCccc
Confidence 98 4555543 5899999999998854332 2 258999999999987 4554432 47999999999987 444433
Q ss_pred ccCCCCcEEEccCCcccCCCCccccCCCCCCeEEecCCccccCcCccccccCCcEEEcccCcccccCChhhhccccccCC
Q 040206 183 INCVNLQFLDVGNNNLSGPIPECLGNSTRLSFLDVGNNSLSGPIPECLANSTLEILDMRMNKFSGSLPQNICKKLCFGPL 262 (347)
Q Consensus 183 ~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~l 262 (347)
.++|+.|++++|.+.. +|..+. ++|+.|++++|.++. .+..+ .+.|+.|++++|.+. .+|.
T Consensus 324 --~~sL~~L~Ls~N~Lt~-LP~~l~--~sL~~L~Ls~N~L~~-LP~~l-p~~L~~LdLs~N~Lt-~LP~----------- 384 (754)
T PRK15370 324 --PPGLKTLEAGENALTS-LPASLP--PELQVLDVSKNQITV-LPETL-PPTITTLDVSRNALT-NLPE----------- 384 (754)
T ss_pred --cccceeccccCCcccc-CChhhc--CcccEEECCCCCCCc-CChhh-cCCcCEEECCCCcCC-CCCH-----------
Confidence 3689999999999884 555553 689999999999884 33332 268999999999998 3333
Q ss_pred CcCccCCCCCcEEEccCCccCCccchhh----hhccCCCEEEcccceeec
Q 040206 263 PPSLVNCQYLEVLDVGNNQIDDTFLYWL----DVLLQLQVLILRSNRFWG 308 (347)
Q Consensus 263 ~~~~~~~~~L~~L~L~~n~i~~~~~~~~----~~l~~L~~l~L~~n~~~~ 308 (347)
.+. ..|+.|++++|.+.. .|..+ ..++.+..+++.+|++..
T Consensus 385 --~l~--~sL~~LdLs~N~L~~-LP~sl~~~~~~~~~l~~L~L~~Npls~ 429 (754)
T PRK15370 385 --NLP--AALQIMQASRNNLVR-LPESLPHFRGEGPQPTRIIVEYNPFSE 429 (754)
T ss_pred --hHH--HHHHHHhhccCCccc-CchhHHHHhhcCCCccEEEeeCCCccH
Confidence 332 268999999999985 34333 345889999999999864
No 17
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.79 E-value=7.2e-21 Score=158.31 Aligned_cols=315 Identities=23% Similarity=0.241 Sum_probs=194.9
Q ss_pred ceEEEecCCCCCCCCh-hhhcCCCccEEeccCCcccccCChhhhhcCCCcccEEEcCC-CcCCCCCCC---CCCCCcEEE
Q 040206 2 TIKTQVKTCNISEFPD-ILRTQHQLEWLDLSKNQIRGRIPSWMWDIGVHTLQFLILSQ-NVLTSIDHL---PWKNLQYLT 76 (347)
Q Consensus 2 l~~l~l~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~-~~l~~~~~~---~~~~L~~L~ 76 (347)
...++|.-|.|+.+|+ +|+.+++|+.|||++|+|+..-|..|. |++.|..|.+.+ |.|++++.. .+..|+.|.
T Consensus 69 tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~--GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLl 146 (498)
T KOG4237|consen 69 TVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFK--GLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLL 146 (498)
T ss_pred ceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhh--hhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHh
Confidence 3678899999999995 999999999999999999844455554 668888877777 889998874 445566667
Q ss_pred ccCCCCCccCCCC---CCCccEEEcccCcccccCCccccCCCCccEEEcccCcccc------------------------
Q 040206 77 LDSNLLQGSLPDL---PPHMVQLLISNNSLTGEIPSSFCNLSSIQYLNLSNNSLSG------------------------ 129 (347)
Q Consensus 77 l~~~~~~~~~~~~---~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~------------------------ 129 (347)
+.-|.+.-..... ++++..|.+.+|.+..+-...|..+..++.+.+..|.+..
T Consensus 147 lNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsgarc~ 226 (498)
T KOG4237|consen 147 LNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGARCV 226 (498)
T ss_pred cChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccchhhhHHhhchhhcccceec
Confidence 6666665433322 3667777777777764444466666666666555544110
Q ss_pred --------------------------------------cCCccc-CCccccEEECCCCccccccCccCCCCCCccEEEcc
Q 040206 130 --------------------------------------QIPQCL-GNSTLETLDLGMNNFQGSIPQTNAKGCNLTSLRLS 170 (347)
Q Consensus 130 --------------------------------------~~~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~ 170 (347)
.+...| .+++|++|++++|.++.+.+.+|.....+++|.+.
T Consensus 227 ~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~ 306 (498)
T KOG4237|consen 227 SPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQELYLT 306 (498)
T ss_pred chHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcchhhhhhhhcC
Confidence 000001 23567777777777776666677777777777777
Q ss_pred CCcccCCCccccccCCCCcEEEccCCcccCCCCccccCCCCCCeEEecCCcccc-----------------CcCcccccc
Q 040206 171 GNHLEGPLPPSLINCVNLQFLDVGNNNLSGPIPECLGNSTRLSFLDVGNNSLSG-----------------PIPECLANS 233 (347)
Q Consensus 171 ~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~~~~~~-----------------~~~~~~~~~ 233 (347)
+|++..+....|.++..|+.|++.+|+|+...|.+|..+.+|.+|++-.|++.= ..+..-.+.
T Consensus 307 ~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~~CnC~l~wl~~Wlr~~~~~~~~~Cq~p~ 386 (498)
T KOG4237|consen 307 RNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPFNCNCRLAWLGEWLRKKSVVGNPRCQSPG 386 (498)
T ss_pred cchHHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCcccCccchHHHHHHHhhCCCCCCCCCCCCc
Confidence 777665555566777777777777777776667777777777777776554320 000111112
Q ss_pred CCcEEEcccCcc---cccCChhhhcc--------------------ccccCCCcCccCCCCCcEEEccCCccCCccchhh
Q 040206 234 TLEILDMRMNKF---SGSLPQNICKK--------------------LCFGPLPPSLVNCQYLEVLDVGNNQIDDTFLYWL 290 (347)
Q Consensus 234 ~L~~L~L~~~~~---~~~~~~~~~~~--------------------~~~~~l~~~~~~~~~L~~L~L~~n~i~~~~~~~~ 290 (347)
.++.+.++...+ +...|++.+-. ..++.+|..+ -....++++.+|.++..+.+
T Consensus 387 ~~~~~~~~dv~~~~~~c~~~ee~~~~~s~~cP~~c~c~~tVvRcSnk~lk~lp~~i--P~d~telyl~gn~~~~vp~~-- 462 (498)
T KOG4237|consen 387 FVRQIPISDVAFGDFRCGGPEELGCLTSSPCPPPCTCLDTVVRCSNKLLKLLPRGI--PVDVTELYLDGNAITSVPDE-- 462 (498)
T ss_pred hhccccchhccccccccCCccccCCCCCCCCCCCcchhhhhHhhcccchhhcCCCC--CchhHHHhcccchhcccCHH--
Confidence 455555554433 22333332111 1112222111 01245788999998864444
Q ss_pred hhccCCCEEEcccceeecccCCccccceeeeeeE
Q 040206 291 DVLLQLQVLILRSNRFWGPIGKLRSRWSGHFIVR 324 (347)
Q Consensus 291 ~~l~~L~~l~L~~n~~~~~~~~~~~~~~~~~~~~ 324 (347)
.+.+| .+|+++|++..---..++....+..+.
T Consensus 463 -~~~~l-~~dls~n~i~~Lsn~tf~n~tql~tli 494 (498)
T KOG4237|consen 463 -LLRSL-LLDLSNNRISSLSNYTFSNMTQLSTLI 494 (498)
T ss_pred -HHhhh-hcccccCceehhhcccccchhhhheeE
Confidence 56677 899999998875555555555444433
No 18
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.78 E-value=1.5e-21 Score=162.31 Aligned_cols=299 Identities=20% Similarity=0.219 Sum_probs=212.6
Q ss_pred EEecCCCCCCCChhhhcCCCccEEeccCCcccccCChhhhhcCCCcccEEEcCCCcCCCCCCCCC---CCCcEEEccC-C
Q 040206 5 TQVKTCNISEFPDILRTQHQLEWLDLSKNQIRGRIPSWMWDIGVHTLQFLILSQNVLTSIDHLPW---KNLQYLTLDS-N 80 (347)
Q Consensus 5 l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~---~~L~~L~l~~-~ 80 (347)
++-++-+++++|..+. +....|.+..|+|+ .+|+..|+ .+++||.|+|+.|.|+.|.+..| ++|..|.+.+ |
T Consensus 51 VdCr~~GL~eVP~~LP--~~tveirLdqN~I~-~iP~~aF~-~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~N 126 (498)
T KOG4237|consen 51 VDCRGKGLTEVPANLP--PETVEIRLDQNQIS-SIPPGAFK-TLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNN 126 (498)
T ss_pred EEccCCCcccCcccCC--CcceEEEeccCCcc-cCChhhcc-chhhhceecccccchhhcChHhhhhhHhhhHHHhhcCC
Confidence 3445567778887776 67889999999999 77777776 66999999999999999998544 5555555555 8
Q ss_pred CCCccCCCCC---CCccEEEcccCcccccCCccccCCCCccEEEcccCcccccCCccc-CCccccEEECCCCccc-----
Q 040206 81 LLQGSLPDLP---PHMVQLLISNNSLTGEIPSSFCNLSSIQYLNLSNNSLSGQIPQCL-GNSTLETLDLGMNNFQ----- 151 (347)
Q Consensus 81 ~~~~~~~~~~---~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~-~~~~L~~L~l~~~~~~----- 151 (347)
++.......+ ..++.|.+..|++..+....|..++++..|.+++|.+.......+ ....++.+.+..|...
T Consensus 127 kI~~l~k~~F~gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL 206 (498)
T KOG4237|consen 127 KITDLPKGAFGGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNL 206 (498)
T ss_pred chhhhhhhHhhhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCcccccccc
Confidence 8886655554 677888888899988888899999999999999998875555344 4456777766665521
Q ss_pred -------cccCccCCCCCCccEEEccCCcccCCCccccccCCCCcEE---EccCCcccCC-CCccccCCCCCCeEEecCC
Q 040206 152 -------GSIPQTNAKGCNLTSLRLSGNHLEGPLPPSLINCVNLQFL---DVGNNNLSGP-IPECLGNSTRLSFLDVGNN 220 (347)
Q Consensus 152 -------~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L---~l~~n~~~~~-~~~~l~~~~~L~~L~l~~~ 220 (347)
...+..+++........+...++....+..+... ++.+ -.+.+...+. ....|..+++|+.+++++|
T Consensus 207 ~wla~~~a~~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~--~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN 284 (498)
T KOG4237|consen 207 PWLADDLAMNPIETSGARCVSPYRLYYKRINQEDARKFLCS--LESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNN 284 (498)
T ss_pred chhhhHHhhchhhcccceecchHHHHHHHhcccchhhhhhh--HHhHHHhhccccCcCCcChHHHHhhcccceEeccCCC
Confidence 1122222332222222233333332333333221 2222 1122223322 2346889999999999999
Q ss_pred ccccCcCccccc-cCCcEEEcccCcccccCChhhhccccccCCCcCccCCCCCcEEEccCCccCCccchhhhhccCCCEE
Q 040206 221 SLSGPIPECLAN-STLEILDMRMNKFSGSLPQNICKKLCFGPLPPSLVNCQYLEVLDVGNNQIDDTFLYWLDVLLQLQVL 299 (347)
Q Consensus 221 ~~~~~~~~~~~~-~~L~~L~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~l 299 (347)
+++.+.+.++.. .++++|.|..|++... -...|.++..|+.|+|.+|+|+...+..|..+-+|..|
T Consensus 285 ~i~~i~~~aFe~~a~l~eL~L~~N~l~~v-------------~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l 351 (498)
T KOG4237|consen 285 KITRIEDGAFEGAAELQELYLTRNKLEFV-------------SSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTL 351 (498)
T ss_pred ccchhhhhhhcchhhhhhhhcCcchHHHH-------------HHHhhhccccceeeeecCCeeEEEecccccccceeeee
Confidence 999887777665 8999999999988732 12358889999999999999999889999999999999
Q ss_pred EcccceeecccC-Cccccceeeee
Q 040206 300 ILRSNRFWGPIG-KLRSRWSGHFI 322 (347)
Q Consensus 300 ~L~~n~~~~~~~-~~~~~~~~~~~ 322 (347)
++-.||+..+.. .|+..|+..+.
T Consensus 352 ~l~~Np~~CnC~l~wl~~Wlr~~~ 375 (498)
T KOG4237|consen 352 NLLSNPFNCNCRLAWLGEWLRKKS 375 (498)
T ss_pred ehccCcccCccchHHHHHHHhhCC
Confidence 999999987644 78888887766
No 19
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.72 E-value=2.8e-19 Score=155.55 Aligned_cols=271 Identities=26% Similarity=0.277 Sum_probs=145.6
Q ss_pred EEEecCCCCC--CCChhhhcCCCccEEeccCCcccccC----ChhhhhcCCCcccEEEcCCCcCCCCCC---------CC
Q 040206 4 KTQVKTCNIS--EFPDILRTQHQLEWLDLSKNQIRGRI----PSWMWDIGVHTLQFLILSQNVLTSIDH---------LP 68 (347)
Q Consensus 4 ~l~l~~~~~~--~~~~~~~~~~~L~~L~l~~~~~~~~~----~~~~~~~~~~~L~~L~l~~~~l~~~~~---------~~ 68 (347)
+|+|.++.++ ..+..+..+++|+.|+++++.+++.. +..+. ..+++++++++++.+...+. ..
T Consensus 2 ~l~L~~~~l~~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~--~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~ 79 (319)
T cd00116 2 QLSLKGELLKTERATELLPKLLCLQVLRLEGNTLGEEAAKALASALR--PQPSLKELCLSLNETGRIPRGLQSLLQGLTK 79 (319)
T ss_pred ccccccCcccccchHHHHHHHhhccEEeecCCCCcHHHHHHHHHHHh--hCCCceEEeccccccCCcchHHHHHHHHHHh
Confidence 5778888776 55667788888999999999886432 22333 23668888888876653111 22
Q ss_pred CCCCcEEEccCCCCCccCCCCCCCccEEEcccCcccccCCccccCC---CCccEEEcccCcccccCC-----cccCC-cc
Q 040206 69 WKNLQYLTLDSNLLQGSLPDLPPHMVQLLISNNSLTGEIPSSFCNL---SSIQYLNLSNNSLSGQIP-----QCLGN-ST 139 (347)
Q Consensus 69 ~~~L~~L~l~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l---~~L~~L~l~~~~~~~~~~-----~~~~~-~~ 139 (347)
+++|+.|++++|.+... .+..+..+ ++|+.|++++|.+..... ..... ++
T Consensus 80 ~~~L~~L~l~~~~~~~~---------------------~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~ 138 (319)
T cd00116 80 GCGLQELDLSDNALGPD---------------------GCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPA 138 (319)
T ss_pred cCceeEEEccCCCCChh---------------------HHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCC
Confidence 44666666666555421 11112222 225555555554431100 00112 34
Q ss_pred ccEEECCCCcccc----ccCccCCCCCCccEEEccCCcccCC----CccccccCCCCcEEEccCCcccCC----CCcccc
Q 040206 140 LETLDLGMNNFQG----SIPQTNAKGCNLTSLRLSGNHLEGP----LPPSLINCVNLQFLDVGNNNLSGP----IPECLG 207 (347)
Q Consensus 140 L~~L~l~~~~~~~----~~~~~~~~~~~L~~L~l~~~~~~~~----~~~~l~~~~~L~~L~l~~n~~~~~----~~~~l~ 207 (347)
|+.+++++|.+.. .....+..+++|++|++++|.++.. .+..+..+++|++|++++|.+.+. ....+.
T Consensus 139 L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~ 218 (319)
T cd00116 139 LEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLA 218 (319)
T ss_pred ceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhc
Confidence 5555555554431 1222344445666666666665522 122334445777777777766422 223445
Q ss_pred CCCCCCeEEecCCccccCcCcccc------ccCCcEEEcccCcccccCChhhhccccccCCCcCccCCCCCcEEEccCCc
Q 040206 208 NSTRLSFLDVGNNSLSGPIPECLA------NSTLEILDMRMNKFSGSLPQNICKKLCFGPLPPSLVNCQYLEVLDVGNNQ 281 (347)
Q Consensus 208 ~~~~L~~L~l~~~~~~~~~~~~~~------~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~ 281 (347)
.+++|++|++++|.+++.....+. ...|+.|++++|.+++.... .+...+..+++|+++++++|.
T Consensus 219 ~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~---------~l~~~~~~~~~L~~l~l~~N~ 289 (319)
T cd00116 219 SLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAK---------DLAEVLAEKESLLELDLRGNK 289 (319)
T ss_pred ccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCCcHHHH---------HHHHHHhcCCCccEEECCCCC
Confidence 566777777777766542211111 14677777777776633222 122234445677777777777
Q ss_pred cCCcc----chhhhhc-cCCCEEEccccee
Q 040206 282 IDDTF----LYWLDVL-LQLQVLILRSNRF 306 (347)
Q Consensus 282 i~~~~----~~~~~~l-~~L~~l~L~~n~~ 306 (347)
+++.. ...+... +.|+.+++.+|++
T Consensus 290 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (319)
T cd00116 290 FGEEGAQLLAESLLEPGNELESLWVKDDSF 319 (319)
T ss_pred CcHHHHHHHHHHHhhcCCchhhcccCCCCC
Confidence 76542 2223333 5677777776653
No 20
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.69 E-value=2.8e-18 Score=149.29 Aligned_cols=246 Identities=27% Similarity=0.322 Sum_probs=141.5
Q ss_pred ceEEEecCCCCC-----CCChhhhcCCCccEEeccCCcccc------cCChhhhhcCCCcccEEEcCCCcCCCCCC---C
Q 040206 2 TIKTQVKTCNIS-----EFPDILRTQHQLEWLDLSKNQIRG------RIPSWMWDIGVHTLQFLILSQNVLTSIDH---L 67 (347)
Q Consensus 2 l~~l~l~~~~~~-----~~~~~~~~~~~L~~L~l~~~~~~~------~~~~~~~~~~~~~L~~L~l~~~~l~~~~~---~ 67 (347)
++.+++++|.++ .+++.+...+++++++++++.+.+ .++..+.. +++|+.|+++++.+..... .
T Consensus 25 L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~--~~~L~~L~l~~~~~~~~~~~~~~ 102 (319)
T cd00116 25 LQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTK--GCGLQELDLSDNALGPDGCGVLE 102 (319)
T ss_pred ccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHh--cCceeEEEccCCCCChhHHHHHH
Confidence 678999999985 467778888999999999987762 12233443 4899999999998874332 1
Q ss_pred CC---CCCcEEEccCCCCCcc--------CCCCCCCccEEEcccCcccc----cCCccccCCCCccEEEcccCcccccCC
Q 040206 68 PW---KNLQYLTLDSNLLQGS--------LPDLPPHMVQLLISNNSLTG----EIPSSFCNLSSIQYLNLSNNSLSGQIP 132 (347)
Q Consensus 68 ~~---~~L~~L~l~~~~~~~~--------~~~~~~~L~~L~l~~~~~~~----~~~~~~~~l~~L~~L~l~~~~~~~~~~ 132 (347)
.+ ++|++|++++|.+... .....++|++|++++|.++. .....+..+..
T Consensus 103 ~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~---------------- 166 (319)
T cd00116 103 SLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRD---------------- 166 (319)
T ss_pred HHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCC----------------
Confidence 12 4488888887776521 01111445555555554441 11122333334
Q ss_pred cccCCccccEEECCCCcccc----ccCccCCCCCCccEEEccCCcccCC----CccccccCCCCcEEEccCCcccCCCCc
Q 040206 133 QCLGNSTLETLDLGMNNFQG----SIPQTNAKGCNLTSLRLSGNHLEGP----LPPSLINCVNLQFLDVGNNNLSGPIPE 204 (347)
Q Consensus 133 ~~~~~~~L~~L~l~~~~~~~----~~~~~~~~~~~L~~L~l~~~~~~~~----~~~~l~~~~~L~~L~l~~n~~~~~~~~ 204 (347)
|++|++++|.+.+ ..+..+...++|++|++++|.++.. ....+..+++|++|++++|.+.+....
T Consensus 167 -------L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~ 239 (319)
T cd00116 167 -------LKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAA 239 (319)
T ss_pred -------cCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHH
Confidence 5555555544431 1112233345666666666665422 223345567777888877776542222
Q ss_pred ccc-----CCCCCCeEEecCCccccCcCc-----cccccCCcEEEcccCcccccCChhhhccccccCCCcCccCC-CCCc
Q 040206 205 CLG-----NSTRLSFLDVGNNSLSGPIPE-----CLANSTLEILDMRMNKFSGSLPQNICKKLCFGPLPPSLVNC-QYLE 273 (347)
Q Consensus 205 ~l~-----~~~~L~~L~l~~~~~~~~~~~-----~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~L~ 273 (347)
.+. ..+.|+.|++.+|.+++.... ....++|+++++++|.+.+.....+ ...+... +.|+
T Consensus 240 ~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~~~~~---------~~~~~~~~~~~~ 310 (319)
T cd00116 240 ALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQLL---------AESLLEPGNELE 310 (319)
T ss_pred HHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcHHHHHHH---------HHHHhhcCCchh
Confidence 221 236788888888877532211 1112578888888888886543322 2223333 4677
Q ss_pred EEEccCCc
Q 040206 274 VLDVGNNQ 281 (347)
Q Consensus 274 ~L~L~~n~ 281 (347)
.+++.++.
T Consensus 311 ~~~~~~~~ 318 (319)
T cd00116 311 SLWVKDDS 318 (319)
T ss_pred hcccCCCC
Confidence 77776664
No 21
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.56 E-value=1.1e-16 Score=118.99 Aligned_cols=186 Identities=27% Similarity=0.332 Sum_probs=144.1
Q ss_pred ccCCCCccEEEcccCcccccCCcccCCccccEEECCCCccccccCccCCCCCCccEEEccCCcccCCCccccccCCCCcE
Q 040206 111 FCNLSSIQYLNLSNNSLSGQIPQCLGNSTLETLDLGMNNFQGSIPQTNAKGCNLTSLRLSGNHLEGPLPPSLINCVNLQF 190 (347)
Q Consensus 111 ~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~ 190 (347)
+..+..++.|.++.|.++..+|......+|+.|++++|.+. .+|..++.+++|+.++++-|++. ..|.+|+.++.|+.
T Consensus 29 Lf~~s~ITrLtLSHNKl~~vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~lev 106 (264)
T KOG0617|consen 29 LFNMSNITRLTLSHNKLTVVPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPALEV 106 (264)
T ss_pred ccchhhhhhhhcccCceeecCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCCCchhhh
Confidence 44567788888888988888888778888999999998887 78888888999999998888887 78888999999999
Q ss_pred EEccCCccc-CCCCccccCCCCCCeEEecCCccccCcCccccccCCcEEEcccCcccccCChhhhccccccCCCcCccCC
Q 040206 191 LDVGNNNLS-GPIPECLGNSTRLSFLDVGNNSLSGPIPECLANSTLEILDMRMNKFSGSLPQNICKKLCFGPLPPSLVNC 269 (347)
Q Consensus 191 L~l~~n~~~-~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 269 (347)
||+++|++. ..+|..|..+..|+.|++++|.+.-..+......+|+.|.++.|.+. .+|..++.+
T Consensus 107 ldltynnl~e~~lpgnff~m~tlralyl~dndfe~lp~dvg~lt~lqil~lrdndll--------------~lpkeig~l 172 (264)
T KOG0617|consen 107 LDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFEILPPDVGKLTNLQILSLRDNDLL--------------SLPKEIGDL 172 (264)
T ss_pred hhccccccccccCCcchhHHHHHHHHHhcCCCcccCChhhhhhcceeEEeeccCchh--------------hCcHHHHHH
Confidence 999988875 36777888888888888888888755555555688888888888777 466677888
Q ss_pred CCCcEEEccCCccCCccchhhhhcc---CCCEEEcccceeecccCCc
Q 040206 270 QYLEVLDVGNNQIDDTFLYWLDVLL---QLQVLILRSNRFWGPIGKL 313 (347)
Q Consensus 270 ~~L~~L~L~~n~i~~~~~~~~~~l~---~L~~l~L~~n~~~~~~~~~ 313 (347)
..|++|++.+|+++-.+|+ ++.+. +=+...+.+||+.-.+.+.
T Consensus 173 t~lrelhiqgnrl~vlppe-l~~l~l~~~k~v~r~E~NPwv~pIaeQ 218 (264)
T KOG0617|consen 173 TRLRELHIQGNRLTVLPPE-LANLDLVGNKQVMRMEENPWVNPIAEQ 218 (264)
T ss_pred HHHHHHhcccceeeecChh-hhhhhhhhhHHHHhhhhCCCCChHHHH
Confidence 8888888888888765554 34332 2345567778877665533
No 22
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.54 E-value=8.8e-17 Score=119.44 Aligned_cols=159 Identities=29% Similarity=0.398 Sum_probs=104.8
Q ss_pred CcccCCccccEEECCCCccccccCccCCCCCCccEEEccCCcccCCCccccccCCCCcEEEccCCcccCCCCccccCCCC
Q 040206 132 PQCLGNSTLETLDLGMNNFQGSIPQTNAKGCNLTSLRLSGNHLEGPLPPSLINCVNLQFLDVGNNNLSGPIPECLGNSTR 211 (347)
Q Consensus 132 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~~~~ 211 (347)
+..+.+..+..|.++.|.++ ..|..+..+.+|+.+++.+|+++ ..|..++.+++|+.|+++.|++. ..|..|++++.
T Consensus 27 ~gLf~~s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~ 103 (264)
T KOG0617|consen 27 PGLFNMSNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPA 103 (264)
T ss_pred ccccchhhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCCCch
Confidence 33445556666677777766 56666666777777777777776 55666777777777777777665 56677777777
Q ss_pred CCeEEecCCccccC--cCccccccCCcEEEcccCcccccCChhhhccccccCCCcCccCCCCCcEEEccCCccCCccchh
Q 040206 212 LSFLDVGNNSLSGP--IPECLANSTLEILDMRMNKFSGSLPQNICKKLCFGPLPPSLVNCQYLEVLDVGNNQIDDTFLYW 289 (347)
Q Consensus 212 L~~L~l~~~~~~~~--~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~i~~~~~~~ 289 (347)
|+.|++.+|++.+. ...++....|+-|+|+.|.+. -+|..++++.+|+.|.+..|.+.. .|..
T Consensus 104 levldltynnl~e~~lpgnff~m~tlralyl~dndfe--------------~lp~dvg~lt~lqil~lrdndll~-lpke 168 (264)
T KOG0617|consen 104 LEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFE--------------ILPPDVGKLTNLQILSLRDNDLLS-LPKE 168 (264)
T ss_pred hhhhhccccccccccCCcchhHHHHHHHHHhcCCCcc--------------cCChhhhhhcceeEEeeccCchhh-CcHH
Confidence 77777777666532 223444466677777777666 356666777777777777776653 5555
Q ss_pred hhhccCCCEEEcccceeec
Q 040206 290 LDVLLQLQVLILRSNRFWG 308 (347)
Q Consensus 290 ~~~l~~L~~l~L~~n~~~~ 308 (347)
++.+..|++|++.||+++-
T Consensus 169 ig~lt~lrelhiqgnrl~v 187 (264)
T KOG0617|consen 169 IGDLTRLRELHIQGNRLTV 187 (264)
T ss_pred HHHHHHHHHHhcccceeee
Confidence 6677777777777777665
No 23
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.36 E-value=1.8e-14 Score=118.77 Aligned_cols=142 Identities=20% Similarity=0.210 Sum_probs=98.9
Q ss_pred CCCCCCccEEEccCCcccCC----CccccccCCCCcEEEccCCcccC----CCCccccCCCCCCeEEecCCccccCcCcc
Q 040206 158 NAKGCNLTSLRLSGNHLEGP----LPPSLINCVNLQFLDVGNNNLSG----PIPECLGNSTRLSFLDVGNNSLSGPIPEC 229 (347)
Q Consensus 158 ~~~~~~L~~L~l~~~~~~~~----~~~~l~~~~~L~~L~l~~n~~~~----~~~~~l~~~~~L~~L~l~~~~~~~~~~~~ 229 (347)
....++|+.+...+|++... +...+...+.|+.+.++.|.|.. .....+..+++|+.|++++|.++......
T Consensus 153 ~~~~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~ 232 (382)
T KOG1909|consen 153 AASKPKLRVFICGRNRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVA 232 (382)
T ss_pred cCCCcceEEEEeeccccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHH
Confidence 44556788888888877633 23345667888888888887752 22345678888999999888877544433
Q ss_pred cc-----ccCCcEEEcccCcccccCChhhhccccccCCCcCccCCCCCcEEEccCCccCCc----cchhhhhccCCCEEE
Q 040206 230 LA-----NSTLEILDMRMNKFSGSLPQNICKKLCFGPLPPSLVNCQYLEVLDVGNNQIDDT----FLYWLDVLLQLQVLI 300 (347)
Q Consensus 230 ~~-----~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~i~~~----~~~~~~~l~~L~~l~ 300 (347)
++ .++|+.+++++|-+...+...+.+. .-...|+|+.+.+.+|.|+.. ....+...+.|..|+
T Consensus 233 LakaL~s~~~L~El~l~dcll~~~Ga~a~~~a--------l~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLn 304 (382)
T KOG1909|consen 233 LAKALSSWPHLRELNLGDCLLENEGAIAFVDA--------LKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLN 304 (382)
T ss_pred HHHHhcccchheeecccccccccccHHHHHHH--------HhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhc
Confidence 22 2678889999988887766654331 123467899999999988642 223345578899999
Q ss_pred cccceee
Q 040206 301 LRSNRFW 307 (347)
Q Consensus 301 L~~n~~~ 307 (347)
|++|++.
T Consensus 305 LngN~l~ 311 (382)
T KOG1909|consen 305 LNGNRLG 311 (382)
T ss_pred CCccccc
Confidence 9999983
No 24
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.33 E-value=5.8e-14 Score=115.83 Aligned_cols=163 Identities=18% Similarity=0.274 Sum_probs=108.2
Q ss_pred ccccEEECCCCcccc----ccCccCCCCCCccEEEccCCcccCC----CccccccCCCCcEEEccCCcccC----CCCcc
Q 040206 138 STLETLDLGMNNFQG----SIPQTNAKGCNLTSLRLSGNHLEGP----LPPSLINCVNLQFLDVGNNNLSG----PIPEC 205 (347)
Q Consensus 138 ~~L~~L~l~~~~~~~----~~~~~~~~~~~L~~L~l~~~~~~~~----~~~~l~~~~~L~~L~l~~n~~~~----~~~~~ 205 (347)
+.|+.+...+|.+.. .....+...+.|+.+.++.|.+... ...++..+++|+.||+.+|-++. .+...
T Consensus 157 ~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~Laka 236 (382)
T KOG1909|consen 157 PKLRVFICGRNRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKA 236 (382)
T ss_pred cceEEEEeeccccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHH
Confidence 456677666666531 1223455567888888888876532 23456789999999999997752 34456
Q ss_pred ccCCCCCCeEEecCCccccCcCcccc------ccCCcEEEcccCcccccCChhhhccccccCCCcCccCCCCCcEEEccC
Q 040206 206 LGNSTRLSFLDVGNNSLSGPIPECLA------NSTLEILDMRMNKFSGSLPQNICKKLCFGPLPPSLVNCQYLEVLDVGN 279 (347)
Q Consensus 206 l~~~~~L~~L~l~~~~~~~~~~~~~~------~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~ 279 (347)
+..+++|+.+++++|.+...+...+. .+.|+.+.+.+|.|+......+ .......+.|+.|+|++
T Consensus 237 L~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~l---------a~~~~ek~dL~kLnLng 307 (382)
T KOG1909|consen 237 LSSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALAL---------AACMAEKPDLEKLNLNG 307 (382)
T ss_pred hcccchheeecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHH---------HHHHhcchhhHHhcCCc
Confidence 78889999999999998876554332 2799999999999987544422 22334478899999999
Q ss_pred CccC--Cccchhh-hhc----cCCCEEEcccceeecc
Q 040206 280 NQID--DTFLYWL-DVL----LQLQVLILRSNRFWGP 309 (347)
Q Consensus 280 n~i~--~~~~~~~-~~l----~~L~~l~L~~n~~~~~ 309 (347)
|++. +.....+ ..+ ..+...+.+.+.+..+
T Consensus 308 N~l~e~de~i~ei~~~~~~~~~~~~~~~~s~e~l~~e 344 (382)
T KOG1909|consen 308 NRLGEKDEGIDEIASKFDTAHVLLEDIDDSEEELERE 344 (382)
T ss_pred ccccccchhHHHHHHhcccccccchhhchhHHHHHhh
Confidence 9993 2222222 222 2344555555555544
No 25
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.30 E-value=8.5e-13 Score=112.08 Aligned_cols=197 Identities=22% Similarity=0.175 Sum_probs=93.3
Q ss_pred CceEEEecCCCCCCCC--hhhhcCCCccEEeccCCcccccCCh-hhhhcCCCcccEEEcCCCcCCCCCC----CCCCCCc
Q 040206 1 KTIKTQVKTCNISEFP--DILRTQHQLEWLDLSKNQIRGRIPS-WMWDIGVHTLQFLILSQNVLTSIDH----LPWKNLQ 73 (347)
Q Consensus 1 ~l~~l~l~~~~~~~~~--~~~~~~~~L~~L~l~~~~~~~~~~~-~~~~~~~~~L~~L~l~~~~l~~~~~----~~~~~L~ 73 (347)
||+.+.|.++.+...+ .....|++++.|+++.|-+..-.+- .+.+ -+|+|+.|+++.|.+..... ..+++|+
T Consensus 122 kL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~e-qLp~Le~LNls~Nrl~~~~~s~~~~~l~~lK 200 (505)
T KOG3207|consen 122 KLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAE-QLPSLENLNLSSNRLSNFISSNTTLLLSHLK 200 (505)
T ss_pred hhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHH-hcccchhcccccccccCCccccchhhhhhhh
Confidence 3555666666655444 3556666666666666655533222 1222 34666666666665544333 3445666
Q ss_pred EEEccCCCCCc----cCCCCCCCccEEEcccCcccccCCccccCCCCccEEEcccCcccccC--CcccCCccccEEECCC
Q 040206 74 YLTLDSNLLQG----SLPDLPPHMVQLLISNNSLTGEIPSSFCNLSSIQYLNLSNNSLSGQI--PQCLGNSTLETLDLGM 147 (347)
Q Consensus 74 ~L~l~~~~~~~----~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~--~~~~~~~~L~~L~l~~ 147 (347)
.|.++.|+++. .....+|+|+.|++..|....+......-++.|+.|++++|.+.... +....++.|+.|+++.
T Consensus 201 ~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnls~ 280 (505)
T KOG3207|consen 201 QLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNLSS 280 (505)
T ss_pred eEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhhhccc
Confidence 66666666652 12222356666666555322122222333455666666665554322 1122334555555555
Q ss_pred CccccccC-cc-----CCCCCCccEEEccCCcccC-CCccccccCCCCcEEEccCCcc
Q 040206 148 NNFQGSIP-QT-----NAKGCNLTSLRLSGNHLEG-PLPPSLINCVNLQFLDVGNNNL 198 (347)
Q Consensus 148 ~~~~~~~~-~~-----~~~~~~L~~L~l~~~~~~~-~~~~~l~~~~~L~~L~l~~n~~ 198 (347)
+.+.+... +. ...+++|++|++..|++.+ .....+..+++|+.|.+..|.+
T Consensus 281 tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~l 338 (505)
T KOG3207|consen 281 TGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLNYL 338 (505)
T ss_pred cCcchhcCCCccchhhhcccccceeeecccCccccccccchhhccchhhhhhcccccc
Confidence 55432211 11 1233455555555555421 1112233344444454444443
No 26
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.22 E-value=1.4e-12 Score=110.72 Aligned_cols=209 Identities=20% Similarity=0.208 Sum_probs=146.8
Q ss_pred CCCCChhhhcCCCccEEeccCCcccccCCh--hhhhcCCCcccEEEcCCCcCCCCCC-----CCCCCCcEEEccCCCCCc
Q 040206 12 ISEFPDILRTQHQLEWLDLSKNQIRGRIPS--WMWDIGVHTLQFLILSQNVLTSIDH-----LPWKNLQYLTLDSNLLQG 84 (347)
Q Consensus 12 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~--~~~~~~~~~L~~L~l~~~~l~~~~~-----~~~~~L~~L~l~~~~~~~ 84 (347)
+..+.+-=.++++|+.+.+.++.+. ..+. ... .|++++.|+++.|-+..+.. ..+++|+.|+++.|.+..
T Consensus 110 fDki~akQsn~kkL~~IsLdn~~V~-~~~~~~~~k--~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~ 186 (505)
T KOG3207|consen 110 FDKIAAKQSNLKKLREISLDNYRVE-DAGIEEYSK--ILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSN 186 (505)
T ss_pred HHHHHHHhhhHHhhhheeecCcccc-ccchhhhhh--hCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccC
Confidence 3344444457889999999999876 3332 333 45999999999998888766 678999999999998763
Q ss_pred ----cCCCCCCCccEEEcccCcccc-cCCccccCCCCccEEEcccCc-ccccCCcccCCccccEEECCCCccccccC--c
Q 040206 85 ----SLPDLPPHMVQLLISNNSLTG-EIPSSFCNLSSIQYLNLSNNS-LSGQIPQCLGNSTLETLDLGMNNFQGSIP--Q 156 (347)
Q Consensus 85 ----~~~~~~~~L~~L~l~~~~~~~-~~~~~~~~l~~L~~L~l~~~~-~~~~~~~~~~~~~L~~L~l~~~~~~~~~~--~ 156 (347)
.....+++++.|.++.|.++- .+......+|+|+.|++..|. +.......--.+.|+.|++++|.+. ..+ .
T Consensus 187 ~~~s~~~~~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li-~~~~~~ 265 (505)
T KOG3207|consen 187 FISSNTTLLLSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLI-DFDQGY 265 (505)
T ss_pred CccccchhhhhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCccc-cccccc
Confidence 233345899999999998762 222345578999999999984 3322222223457999999999876 333 4
Q ss_pred cCCCCCCccEEEccCCcccCCCcccc------ccCCCCcEEEccCCcccCC-CCccccCCCCCCeEEecCCcccc
Q 040206 157 TNAKGCNLTSLRLSGNHLEGPLPPSL------INCVNLQFLDVGNNNLSGP-IPECLGNSTRLSFLDVGNNSLSG 224 (347)
Q Consensus 157 ~~~~~~~L~~L~l~~~~~~~~~~~~l------~~~~~L~~L~l~~n~~~~~-~~~~l~~~~~L~~L~l~~~~~~~ 224 (347)
....++.|..++++.+++.+..-... ..+++|+.|++..|++.+. ....+..+++|+.|.+..|.+..
T Consensus 266 ~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~ln~ 340 (505)
T KOG3207|consen 266 KVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLNYLNK 340 (505)
T ss_pred ccccccchhhhhccccCcchhcCCCccchhhhcccccceeeecccCccccccccchhhccchhhhhhcccccccc
Confidence 56677889999999988875422222 4568899999999988532 11334556677777777776653
No 27
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.17 E-value=6.4e-11 Score=106.08 Aligned_cols=194 Identities=37% Similarity=0.434 Sum_probs=120.7
Q ss_pred EEeccCCcccccCChhhhhcCCCcccEEEcCCCcCCCCCC--CCCC-CCcEEEccCCCCCcc--CCCCCCCccEEEcccC
Q 040206 27 WLDLSKNQIRGRIPSWMWDIGVHTLQFLILSQNVLTSIDH--LPWK-NLQYLTLDSNLLQGS--LPDLPPHMVQLLISNN 101 (347)
Q Consensus 27 ~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~--~~~~-~L~~L~l~~~~~~~~--~~~~~~~L~~L~l~~~ 101 (347)
.+....+.+.... ..+.. ++.++.+++.++.++.++. .... +|+.|++++|++... ....+++|+.|+++.|
T Consensus 97 ~l~~~~~~~~~~~-~~~~~--~~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N 173 (394)
T COG4886 97 SLDLNLNRLRSNI-SELLE--LTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFN 173 (394)
T ss_pred eeeccccccccCc-hhhhc--ccceeEEecCCcccccCccccccchhhcccccccccchhhhhhhhhccccccccccCCc
Confidence 4555555553222 22222 2567777777777777766 2222 677777777777765 4455677777777777
Q ss_pred cccccCCccccCCCCccEEEcccCcccccCCcccCCccccEEECCCCccccccCccCCCCCCccEEEccCCcccCCCccc
Q 040206 102 SLTGEIPSSFCNLSSIQYLNLSNNSLSGQIPQCLGNSTLETLDLGMNNFQGSIPQTNAKGCNLTSLRLSGNHLEGPLPPS 181 (347)
Q Consensus 102 ~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~ 181 (347)
++. ..+...+..+.|+.|++++|.+.......-....|+++.+++|... ..+..+....++..+.+..+++. ..+..
T Consensus 174 ~l~-~l~~~~~~~~~L~~L~ls~N~i~~l~~~~~~~~~L~~l~~~~N~~~-~~~~~~~~~~~l~~l~l~~n~~~-~~~~~ 250 (394)
T COG4886 174 DLS-DLPKLLSNLSNLNNLDLSGNKISDLPPEIELLSALEELDLSNNSII-ELLSSLSNLKNLSGLELSNNKLE-DLPES 250 (394)
T ss_pred hhh-hhhhhhhhhhhhhheeccCCccccCchhhhhhhhhhhhhhcCCcce-ecchhhhhcccccccccCCceee-eccch
Confidence 777 3333333667777777777777744333222334777777777433 44555666667777777777665 22456
Q ss_pred cccCCCCcEEEccCCcccCCCCccccCCCCCCeEEecCCccccCcCc
Q 040206 182 LINCVNLQFLDVGNNNLSGPIPECLGNSTRLSFLDVGNNSLSGPIPE 228 (347)
Q Consensus 182 l~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~ 228 (347)
++.++.++.|++++|.+..... +....+++.++++++.+....+.
T Consensus 251 ~~~l~~l~~L~~s~n~i~~i~~--~~~~~~l~~L~~s~n~~~~~~~~ 295 (394)
T COG4886 251 IGNLSNLETLDLSNNQISSISS--LGSLTNLRELDLSGNSLSNALPL 295 (394)
T ss_pred hccccccceecccccccccccc--ccccCccCEEeccCccccccchh
Confidence 6777778888888887764332 67777788888877776654443
No 28
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.14 E-value=6.2e-11 Score=106.18 Aligned_cols=197 Identities=32% Similarity=0.355 Sum_probs=121.1
Q ss_pred EEEcccCcccccCCccccCCCCccEEEcccCcccccCCcccCCc-cccEEECCCCccccccCccCCCCCCccEEEccCCc
Q 040206 95 QLLISNNSLTGEIPSSFCNLSSIQYLNLSNNSLSGQIPQCLGNS-TLETLDLGMNNFQGSIPQTNAKGCNLTSLRLSGNH 173 (347)
Q Consensus 95 ~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~-~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 173 (347)
.+.+..+.+. .....+..++.++.+.+.++.++...+...... +|+.++++.|.+. ..+..+..+++|+.|+++.|+
T Consensus 97 ~l~~~~~~~~-~~~~~~~~~~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N~ 174 (394)
T COG4886 97 SLDLNLNRLR-SNISELLELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFND 174 (394)
T ss_pred eeeccccccc-cCchhhhcccceeEEecCCcccccCccccccchhhcccccccccchh-hhhhhhhccccccccccCCch
Confidence 3455555442 122233344667777777777775555444442 6777777777765 444556667777777777777
Q ss_pred ccCCCccccccCCCCcEEEccCCcccCCCCccccCCCCCCeEEecCCccccCcCccccccCCcEEEcccCcccccCChhh
Q 040206 174 LEGPLPPSLINCVNLQFLDVGNNNLSGPIPECLGNSTRLSFLDVGNNSLSGPIPECLANSTLEILDMRMNKFSGSLPQNI 253 (347)
Q Consensus 174 ~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~ 253 (347)
+. ..+...+..+.|+.|++++|.+. .+|........|.++.+.+|.+...........++..+.+.+|++..
T Consensus 175 l~-~l~~~~~~~~~L~~L~ls~N~i~-~l~~~~~~~~~L~~l~~~~N~~~~~~~~~~~~~~l~~l~l~~n~~~~------ 246 (394)
T COG4886 175 LS-DLPKLLSNLSNLNNLDLSGNKIS-DLPPEIELLSALEELDLSNNSIIELLSSLSNLKNLSGLELSNNKLED------ 246 (394)
T ss_pred hh-hhhhhhhhhhhhhheeccCCccc-cCchhhhhhhhhhhhhhcCCcceecchhhhhcccccccccCCceeee------
Confidence 76 33333336677777777777776 33444344555777777777544344444444566666667766662
Q ss_pred hccccccCCCcCccCCCCCcEEEccCCccCCccchhhhhccCCCEEEcccceeecccC
Q 040206 254 CKKLCFGPLPPSLVNCQYLEVLDVGNNQIDDTFLYWLDVLLQLQVLILRSNRFWGPIG 311 (347)
Q Consensus 254 ~~~~~~~~l~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~l~L~~n~~~~~~~ 311 (347)
++..++.++.++.|++++|.++.... ++.+.+++.+++++|.+....+
T Consensus 247 --------~~~~~~~l~~l~~L~~s~n~i~~i~~--~~~~~~l~~L~~s~n~~~~~~~ 294 (394)
T COG4886 247 --------LPESIGNLSNLETLDLSNNQISSISS--LGSLTNLRELDLSGNSLSNALP 294 (394)
T ss_pred --------ccchhccccccceecccccccccccc--ccccCccCEEeccCccccccch
Confidence 34456667778888888887776444 6677778888888777765433
No 29
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.13 E-value=1.8e-12 Score=113.66 Aligned_cols=169 Identities=30% Similarity=0.375 Sum_probs=81.3
Q ss_pred EEEcccCcccccCCccccCCCCccEEEcccCcccccCCcccCCccccEEECCCCccccccCccCCCCCCccEEEccCCcc
Q 040206 95 QLLISNNSLTGEIPSSFCNLSSIQYLNLSNNSLSGQIPQCLGNSTLETLDLGMNNFQGSIPQTNAKGCNLTSLRLSGNHL 174 (347)
Q Consensus 95 ~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 174 (347)
..+++.|.+. .+|..+..+..|+.+.++.|.+-..+........|..++++.|.+. ..|..++.+ -|+.+-+++|++
T Consensus 79 ~aDlsrNR~~-elp~~~~~f~~Le~liLy~n~~r~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC~l-pLkvli~sNNkl 155 (722)
T KOG0532|consen 79 FADLSRNRFS-ELPEEACAFVSLESLILYHNCIRTIPEAICNLEALTFLDLSSNQLS-HLPDGLCDL-PLKVLIVSNNKL 155 (722)
T ss_pred hhhccccccc-cCchHHHHHHHHHHHHHHhccceecchhhhhhhHHHHhhhccchhh-cCChhhhcC-cceeEEEecCcc
Confidence 3445555544 4444444444555555555544433333333444555555555554 444444443 244444555555
Q ss_pred cCCCccccccCCCCcEEEccCCcccCCCCccccCCCCCCeEEecCCccccCcCccccccCCcEEEcccCcccccCChhhh
Q 040206 175 EGPLPPSLINCVNLQFLDVGNNNLSGPIPECLGNSTRLSFLDVGNNSLSGPIPECLANSTLEILDMRMNKFSGSLPQNIC 254 (347)
Q Consensus 175 ~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~ 254 (347)
+ ..|..++....|..|+.+.|.+. .+|..++.+.+|+.|.+..|++.....+ .+.-.|..||+++|++.
T Consensus 156 ~-~lp~~ig~~~tl~~ld~s~nei~-slpsql~~l~slr~l~vrRn~l~~lp~E-l~~LpLi~lDfScNkis-------- 224 (722)
T KOG0532|consen 156 T-SLPEEIGLLPTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRNHLEDLPEE-LCSLPLIRLDFSCNKIS-------- 224 (722)
T ss_pred c-cCCcccccchhHHHhhhhhhhhh-hchHHhhhHHHHHHHHHhhhhhhhCCHH-HhCCceeeeecccCcee--------
Confidence 4 44444554455555555555554 3344445555555555555554422222 22334555555555555
Q ss_pred ccccccCCCcCccCCCCCcEEEccCCccC
Q 040206 255 KKLCFGPLPPSLVNCQYLEVLDVGNNQID 283 (347)
Q Consensus 255 ~~~~~~~l~~~~~~~~~L~~L~L~~n~i~ 283 (347)
.+|..|..+..|++|-|.+|.+.
T Consensus 225 ------~iPv~fr~m~~Lq~l~LenNPLq 247 (722)
T KOG0532|consen 225 ------YLPVDFRKMRHLQVLQLENNPLQ 247 (722)
T ss_pred ------ecchhhhhhhhheeeeeccCCCC
Confidence 24444555555555555555554
No 30
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.12 E-value=8.5e-11 Score=90.92 Aligned_cols=130 Identities=28% Similarity=0.265 Sum_probs=45.8
Q ss_pred CCccEEEccCCcccCCCccccc-cCCCCcEEEccCCcccCCCCccccCCCCCCeEEecCCccccCcCccc-cccCCcEEE
Q 040206 162 CNLTSLRLSGNHLEGPLPPSLI-NCVNLQFLDVGNNNLSGPIPECLGNSTRLSFLDVGNNSLSGPIPECL-ANSTLEILD 239 (347)
Q Consensus 162 ~~L~~L~l~~~~~~~~~~~~l~-~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~-~~~~L~~L~ 239 (347)
.++++|++.++.++.. ..++ .+.+|+.|++++|.+... ..+..++.|++|++++|.++....... ..++|+.|+
T Consensus 19 ~~~~~L~L~~n~I~~I--e~L~~~l~~L~~L~Ls~N~I~~l--~~l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~L~ 94 (175)
T PF14580_consen 19 VKLRELNLRGNQISTI--ENLGATLDKLEVLDLSNNQITKL--EGLPGLPRLKTLDLSNNRISSISEGLDKNLPNLQELY 94 (175)
T ss_dssp -------------------S--TT-TT--EEE-TTS--S----TT----TT--EEE--SS---S-CHHHHHH-TT--EEE
T ss_pred cccccccccccccccc--cchhhhhcCCCEEECCCCCCccc--cCccChhhhhhcccCCCCCCccccchHHhCCcCCEEE
Confidence 4567777777777633 3444 466777777777777632 356667777777777777775433222 246777777
Q ss_pred cccCcccccCChhhhccccccCCCcCccCCCCCcEEEccCCccCCcc---chhhhhccCCCEEEcccceeecc
Q 040206 240 MRMNKFSGSLPQNICKKLCFGPLPPSLVNCQYLEVLDVGNNQIDDTF---LYWLDVLLQLQVLILRSNRFWGP 309 (347)
Q Consensus 240 L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~i~~~~---~~~~~~l~~L~~l~L~~n~~~~~ 309 (347)
+++|+|.+.. .+ ..+..+++|+.|++.+|.+.... ...+..+|+|+.||- .++++.
T Consensus 95 L~~N~I~~l~-----------~l-~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~--~~V~~~ 153 (175)
T PF14580_consen 95 LSNNKISDLN-----------EL-EPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDG--QDVTEE 153 (175)
T ss_dssp -TTS---SCC-----------CC-GGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETT--EETTS-
T ss_pred CcCCcCCChH-----------Hh-HHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCC--EEccHH
Confidence 7777776421 11 24567888888888888876422 234567788888774 344443
No 31
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.12 E-value=5.2e-11 Score=92.09 Aligned_cols=135 Identities=22% Similarity=0.269 Sum_probs=43.8
Q ss_pred ecCCCCCCCChhhhcCCCccEEeccCCcccccCChhhhhcCCCcccEEEcCCCcCCCCCC-CCCCCCcEEEccCCCCCcc
Q 040206 7 VKTCNISEFPDILRTQHQLEWLDLSKNQIRGRIPSWMWDIGVHTLQFLILSQNVLTSIDH-LPWKNLQYLTLDSNLLQGS 85 (347)
Q Consensus 7 l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~-~~~~~L~~L~l~~~~~~~~ 85 (347)
+....+..+|. +.+..+++.|++.++.|+ .+. .+.. .+.+|+.|++++|.++.+.. ..++.|++|++++|.++..
T Consensus 4 lt~~~i~~~~~-~~n~~~~~~L~L~~n~I~-~Ie-~L~~-~l~~L~~L~Ls~N~I~~l~~l~~L~~L~~L~L~~N~I~~i 79 (175)
T PF14580_consen 4 LTANMIEQIAQ-YNNPVKLRELNLRGNQIS-TIE-NLGA-TLDKLEVLDLSNNQITKLEGLPGLPRLKTLDLSNNRISSI 79 (175)
T ss_dssp -----------------------------------S--T-T-TT--EEE-TTS--S--TT----TT--EEE--SS---S-
T ss_pred ccccccccccc-cccccccccccccccccc-ccc-chhh-hhcCCCEEECCCCCCccccCccChhhhhhcccCCCCCCcc
Confidence 33444445554 445567888899888887 443 3332 34788899999998888877 5678888888888888765
Q ss_pred CC---CCCCCccEEEcccCcccccC-CccccCCCCccEEEcccCcccccCCc----ccCCccccEEEC
Q 040206 86 LP---DLPPHMVQLLISNNSLTGEI-PSSFCNLSSIQYLNLSNNSLSGQIPQ----CLGNSTLETLDL 145 (347)
Q Consensus 86 ~~---~~~~~L~~L~l~~~~~~~~~-~~~~~~l~~L~~L~l~~~~~~~~~~~----~~~~~~L~~L~l 145 (347)
.. ..+|+|++|++++|.+.... ...+..+++|+.|++.+|+++..... ...+|+|+.||-
T Consensus 80 ~~~l~~~lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~ 147 (175)
T PF14580_consen 80 SEGLDKNLPNLQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDG 147 (175)
T ss_dssp CHHHHHH-TT--EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETT
T ss_pred ccchHHhCCcCCEEECcCCcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCC
Confidence 32 23578888888888876432 24566788888888888888743211 113456666653
No 32
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=99.07 E-value=4.7e-11 Score=97.14 Aligned_cols=226 Identities=22% Similarity=0.196 Sum_probs=133.2
Q ss_pred CCChhhhcCCCccEEeccCCc--cc------ccCChhhhhcCCCcccEEEcCCCcCCCCCCC--CCCCCcEEEccCCCCC
Q 040206 14 EFPDILRTQHQLEWLDLSKNQ--IR------GRIPSWMWDIGVHTLQFLILSQNVLTSIDHL--PWKNLQYLTLDSNLLQ 83 (347)
Q Consensus 14 ~~~~~~~~~~~L~~L~l~~~~--~~------~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~--~~~~L~~L~l~~~~~~ 83 (347)
.+...+.-+.+|+.|..++.+ +. ..+|-.+. .+++|+.+.++.+.-..+... .-|.|+++.+....+.
T Consensus 173 d~~hildf~~~l~~l~vs~~~~p~~~sni~~~~l~f~l~--~f~~l~~~~~s~~~~~~i~~~~~~kptl~t~~v~~s~~~ 250 (490)
T KOG1259|consen 173 DFSHVLDFCTQLVALVVTPVKDPIDRSNIIPNRLSFNLN--AFRNLKTLKFSALSTENIVDIELLKPTLQTICVHNTTIQ 250 (490)
T ss_pred chHHHHHhhhheeEEEecCCCCCCccccccccccccchH--HhhhhheeeeeccchhheeceeecCchhheeeeeccccc
Confidence 344455556777777766542 11 11122222 237788888888765554441 2267888887765544
Q ss_pred ccCCCCCCCccEEEcccC---cccccCCccccCCCCccEEEcccCcccccCCcccCCccccEEECCCCccccccCccCCC
Q 040206 84 GSLPDLPPHMVQLLISNN---SLTGEIPSSFCNLSSIQYLNLSNNSLSGQIPQCLGNSTLETLDLGMNNFQGSIPQTNAK 160 (347)
Q Consensus 84 ~~~~~~~~~L~~L~l~~~---~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~ 160 (347)
. .+.+.|.-...+...- ...+.....+..++.|+++++++|.|+.+....--.+.++.|+++.|.+. .. ..+..
T Consensus 251 ~-~~~l~pe~~~~D~~~~E~~t~~G~~~~~~dTWq~LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N~i~-~v-~nLa~ 327 (490)
T KOG1259|consen 251 D-VPSLLPETILADPSGSEPSTSNGSALVSADTWQELTELDLSGNLITQIDESVKLAPKLRRLILSQNRIR-TV-QNLAE 327 (490)
T ss_pred c-cccccchhhhcCccCCCCCccCCceEEecchHhhhhhccccccchhhhhhhhhhccceeEEecccccee-ee-hhhhh
Confidence 2 2222222222222221 11222233444567778888888877765555445567888888888775 22 23667
Q ss_pred CCCccEEEccCCcccCCCccccccCCCCcEEEccCCcccCCCCccccCCCCCCeEEecCCccccCc--CccccccCCcEE
Q 040206 161 GCNLTSLRLSGNHLEGPLPPSLINCVNLQFLDVGNNNLSGPIPECLGNSTRLSFLDVGNNSLSGPI--PECLANSTLEIL 238 (347)
Q Consensus 161 ~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~--~~~~~~~~L~~L 238 (347)
+++|+.|++++|.++ ....+-..+-+.++|.+++|.+.+ ...+..+.+|..|++.+|+|.... ..+...|.|+.+
T Consensus 328 L~~L~~LDLS~N~Ls-~~~Gwh~KLGNIKtL~La~N~iE~--LSGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l 404 (490)
T KOG1259|consen 328 LPQLQLLDLSGNLLA-ECVGWHLKLGNIKTLKLAQNKIET--LSGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETL 404 (490)
T ss_pred cccceEeecccchhH-hhhhhHhhhcCEeeeehhhhhHhh--hhhhHhhhhheeccccccchhhHHHhcccccccHHHHH
Confidence 778888888888776 333444556677788888887763 245667777888888888776422 223333777778
Q ss_pred EcccCcccc
Q 040206 239 DMRMNKFSG 247 (347)
Q Consensus 239 ~L~~~~~~~ 247 (347)
.|.+|.+..
T Consensus 405 ~L~~NPl~~ 413 (490)
T KOG1259|consen 405 RLTGNPLAG 413 (490)
T ss_pred hhcCCCccc
Confidence 888887763
No 33
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=99.07 E-value=2.4e-11 Score=98.75 Aligned_cols=130 Identities=26% Similarity=0.288 Sum_probs=98.8
Q ss_pred CCccEEEccCCcccCCCccccccCCCCcEEEccCCcccCCCCccccCCCCCCeEEecCCccccCcCccccccCCcEEEcc
Q 040206 162 CNLTSLRLSGNHLEGPLPPSLINCVNLQFLDVGNNNLSGPIPECLGNSTRLSFLDVGNNSLSGPIPECLANSTLEILDMR 241 (347)
Q Consensus 162 ~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~L~ 241 (347)
..|+++++++|.++ .+.....-.|.++.|+++.|++... ..++.+++|..|++++|.++...-.....-+++.|.|+
T Consensus 284 q~LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~~v--~nLa~L~~L~~LDLS~N~Ls~~~Gwh~KLGNIKtL~La 360 (490)
T KOG1259|consen 284 QELTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIRTV--QNLAELPQLQLLDLSGNLLAECVGWHLKLGNIKTLKLA 360 (490)
T ss_pred hhhhhccccccchh-hhhhhhhhccceeEEeccccceeee--hhhhhcccceEeecccchhHhhhhhHhhhcCEeeeehh
Confidence 46888889988887 4456677778899999999988733 34788889999999998887544444444688889999
Q ss_pred cCcccccCChhhhccccccCCCcCccCCCCCcEEEccCCccCCcc-chhhhhccCCCEEEcccceeecc
Q 040206 242 MNKFSGSLPQNICKKLCFGPLPPSLVNCQYLEVLDVGNNQIDDTF-LYWLDVLLQLQVLILRSNRFWGP 309 (347)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~i~~~~-~~~~~~l~~L~~l~L~~n~~~~~ 309 (347)
.|.+.+. +.+.++-+|..||+++|+|...- ...++++|-|+.+.|.+||+.+.
T Consensus 361 ~N~iE~L---------------SGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~~ 414 (490)
T KOG1259|consen 361 QNKIETL---------------SGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAGS 414 (490)
T ss_pred hhhHhhh---------------hhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCcccc
Confidence 9888731 24567778999999999886422 24578889999999999998763
No 34
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.99 E-value=2e-11 Score=107.19 Aligned_cols=167 Identities=26% Similarity=0.349 Sum_probs=94.1
Q ss_pred EEEccCCCCCccCCCC--CCCccEEEcccCcccccCCccccCCCCccEEEcccCcccccCCcccCCccccEEECCCCccc
Q 040206 74 YLTLDSNLLQGSLPDL--PPHMVQLLISNNSLTGEIPSSFCNLSSIQYLNLSNNSLSGQIPQCLGNSTLETLDLGMNNFQ 151 (347)
Q Consensus 74 ~L~l~~~~~~~~~~~~--~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 151 (347)
..+++.|++...+... +..|+.+.+..|.+. .++..++++..|+.++++.|++...+.. ....-|+.+.+++|++.
T Consensus 79 ~aDlsrNR~~elp~~~~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS~lp~~-lC~lpLkvli~sNNkl~ 156 (722)
T KOG0532|consen 79 FADLSRNRFSELPEEACAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLSHLPDG-LCDLPLKVLIVSNNKLT 156 (722)
T ss_pred hhhccccccccCchHHHHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhhcCChh-hhcCcceeEEEecCccc
Confidence 4455555555433332 355666666666665 5555666666666666666666533322 23334666666666665
Q ss_pred cccCccCCCCCCccEEEccCCcccCCCccccccCCCCcEEEccCCcccCCCCccccCCCCCCeEEecCCccccCcCcccc
Q 040206 152 GSIPQTNAKGCNLTSLRLSGNHLEGPLPPSLINCVNLQFLDVGNNNLSGPIPECLGNSTRLSFLDVGNNSLSGPIPECLA 231 (347)
Q Consensus 152 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~ 231 (347)
..|..+...++|..++.+.|.+. ..|..++.+.+|+.|.+..|.+. .+|..+..+ .|..|+++.|++......+-.
T Consensus 157 -~lp~~ig~~~tl~~ld~s~nei~-slpsql~~l~slr~l~vrRn~l~-~lp~El~~L-pLi~lDfScNkis~iPv~fr~ 232 (722)
T KOG0532|consen 157 -SLPEEIGLLPTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRNHLE-DLPEELCSL-PLIRLDFSCNKISYLPVDFRK 232 (722)
T ss_pred -cCCcccccchhHHHhhhhhhhhh-hchHHhhhHHHHHHHHHhhhhhh-hCCHHHhCC-ceeeeecccCceeecchhhhh
Confidence 55555555566666666666665 34445566666666666666655 334444433 356666666666644434444
Q ss_pred ccCCcEEEcccCccc
Q 040206 232 NSTLEILDMRMNKFS 246 (347)
Q Consensus 232 ~~~L~~L~L~~~~~~ 246 (347)
..+|++|-|.+|.+.
T Consensus 233 m~~Lq~l~LenNPLq 247 (722)
T KOG0532|consen 233 MRHLQVLQLENNPLQ 247 (722)
T ss_pred hhhheeeeeccCCCC
Confidence 466666666666666
No 35
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.95 E-value=5.4e-10 Score=107.48 Aligned_cols=77 Identities=25% Similarity=0.316 Sum_probs=39.4
Q ss_pred eEEEecCCC--CCCCCh-hhhcCCCccEEeccCCcccccCChhhhhcCCCcccEEEcCCCcCCCCCC--CCCCCCcEEEc
Q 040206 3 IKTQVKTCN--ISEFPD-ILRTQHQLEWLDLSKNQIRGRIPSWMWDIGVHTLQFLILSQNVLTSIDH--LPWKNLQYLTL 77 (347)
Q Consensus 3 ~~l~l~~~~--~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~--~~~~~L~~L~l 77 (347)
+.|-+.++. +..++. +|..+|.|+.||+++|.-.+.+|..+.++ -+||.|+++++.+..+|. .+++.|.+|++
T Consensus 548 ~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~L--i~LryL~L~~t~I~~LP~~l~~Lk~L~~Lnl 625 (889)
T KOG4658|consen 548 RTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGEL--VHLRYLDLSDTGISHLPSGLGNLKKLIYLNL 625 (889)
T ss_pred ceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhh--hhhhcccccCCCccccchHHHHHHhhheecc
Confidence 344444443 333332 35555666666665553333555555544 555555555555555544 44555555555
Q ss_pred cCCC
Q 040206 78 DSNL 81 (347)
Q Consensus 78 ~~~~ 81 (347)
..+.
T Consensus 626 ~~~~ 629 (889)
T KOG4658|consen 626 EVTG 629 (889)
T ss_pred cccc
Confidence 5444
No 36
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.85 E-value=1.9e-09 Score=68.63 Aligned_cols=60 Identities=33% Similarity=0.413 Sum_probs=52.3
Q ss_pred cCCcEEEcccCcccccCChhhhccccccCCC-cCccCCCCCcEEEccCCccCCccchhhhhccCCCEEEccccee
Q 040206 233 STLEILDMRMNKFSGSLPQNICKKLCFGPLP-PSLVNCQYLEVLDVGNNQIDDTFLYWLDVLLQLQVLILRSNRF 306 (347)
Q Consensus 233 ~~L~~L~L~~~~~~~~~~~~~~~~~~~~~l~-~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~l~L~~n~~ 306 (347)
++|++|++++|.+.. +| .+|.++++|++|++++|.+....+..|..+++|++|++++|++
T Consensus 1 p~L~~L~l~~n~l~~--------------i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNNKLTE--------------IPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSSTESE--------------ECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred CcCcEEECCCCCCCc--------------cCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 478899999998884 33 4688999999999999999988888999999999999999975
No 37
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.80 E-value=6.3e-11 Score=96.23 Aligned_cols=168 Identities=18% Similarity=0.136 Sum_probs=107.2
Q ss_pred CceEEEecCCCCC--CCChhhhcCCCccEEeccCCcccccCChhhhhcCCCcccEEEcCCC-cCCCCCC----CCCCCCc
Q 040206 1 KTIKTQVKTCNIS--EFPDILRTQHQLEWLDLSKNQIRGRIPSWMWDIGVHTLQFLILSQN-VLTSIDH----LPWKNLQ 73 (347)
Q Consensus 1 ~l~~l~l~~~~~~--~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~-~l~~~~~----~~~~~L~ 73 (347)
+++++||+...++ .+...+..|.+|+.|++.++.+.+.+...+++. .+|+.++++.+ .++.... ..+..|+
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN--~~L~~lnlsm~sG~t~n~~~ll~~scs~L~ 263 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKN--SNLVRLNLSMCSGFTENALQLLLSSCSRLD 263 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhcc--ccceeeccccccccchhHHHHHHHhhhhHh
Confidence 3678899988888 666788899999999999999998888888876 89999999986 4554443 5678888
Q ss_pred EEEccCCCCCcc-----CCCCCCCccEEEcccCccc--c-cCCccccCCCCccEEEcccCcccc--cCCcccCCccccEE
Q 040206 74 YLTLDSNLLQGS-----LPDLPPHMVQLLISNNSLT--G-EIPSSFCNLSSIQYLNLSNNSLSG--QIPQCLGNSTLETL 143 (347)
Q Consensus 74 ~L~l~~~~~~~~-----~~~~~~~L~~L~l~~~~~~--~-~~~~~~~~l~~L~~L~l~~~~~~~--~~~~~~~~~~L~~L 143 (347)
.|++++|..... +....++|+.|+++|+.-. . .+..-...+++|.+||++++.... ....++.++.|++|
T Consensus 264 ~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~l 343 (419)
T KOG2120|consen 264 ELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHL 343 (419)
T ss_pred hcCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheee
Confidence 899988887643 2233477788888776321 1 111123356777777777664321 11222344556666
Q ss_pred ECCCCccccccCc---cCCCCCCccEEEccCC
Q 040206 144 DLGMNNFQGSIPQ---TNAKGCNLTSLRLSGN 172 (347)
Q Consensus 144 ~l~~~~~~~~~~~---~~~~~~~L~~L~l~~~ 172 (347)
.++.|-. ..|. .+...|.|.+|++.++
T Consensus 344 SlsRCY~--i~p~~~~~l~s~psl~yLdv~g~ 373 (419)
T KOG2120|consen 344 SLSRCYD--IIPETLLELNSKPSLVYLDVFGC 373 (419)
T ss_pred ehhhhcC--CChHHeeeeccCcceEEEEeccc
Confidence 6665532 1221 2333455555555444
No 38
>PLN03150 hypothetical protein; Provisional
Probab=98.77 E-value=2.1e-08 Score=94.44 Aligned_cols=109 Identities=28% Similarity=0.400 Sum_probs=72.6
Q ss_pred CcEEEccCCcccCCCCccccCCCCCCeEEecCCccccCcCcccc-ccCCcEEEcccCcccccCChhhhccccccCCCcCc
Q 040206 188 LQFLDVGNNNLSGPIPECLGNSTRLSFLDVGNNSLSGPIPECLA-NSTLEILDMRMNKFSGSLPQNICKKLCFGPLPPSL 266 (347)
Q Consensus 188 L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~-~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~l~~~~ 266 (347)
++.|++++|.+.+..|..+..+++|+.|++++|.+.+..+..+. .++|+.|+|++|.+.+. +|..+
T Consensus 420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~-------------iP~~l 486 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGS-------------IPESL 486 (623)
T ss_pred EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCC-------------CchHH
Confidence 56677777777767777777777777777777777665554333 36777777777777764 33345
Q ss_pred cCCCCCcEEEccCCccCCccchhhhhc-cCCCEEEcccceeecc
Q 040206 267 VNCQYLEVLDVGNNQIDDTFLYWLDVL-LQLQVLILRSNRFWGP 309 (347)
Q Consensus 267 ~~~~~L~~L~L~~n~i~~~~~~~~~~l-~~L~~l~L~~n~~~~~ 309 (347)
+.+++|+.|+|++|.+.+..|..+... ..+..+++.+|+..+.
T Consensus 487 ~~L~~L~~L~Ls~N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~ 530 (623)
T PLN03150 487 GQLTSLRILNLNGNSLSGRVPAALGGRLLHRASFNFTDNAGLCG 530 (623)
T ss_pred hcCCCCCEEECcCCcccccCChHHhhccccCceEEecCCccccC
Confidence 667777777777777776666655542 3556677777765543
No 39
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.71 E-value=1.3e-08 Score=64.74 Aligned_cols=59 Identities=44% Similarity=0.602 Sum_probs=34.0
Q ss_pred CccEEEccCCcccCCCccccccCCCCcEEEccCCcccCCCCccccCCCCCCeEEecCCc
Q 040206 163 NLTSLRLSGNHLEGPLPPSLINCVNLQFLDVGNNNLSGPIPECLGNSTRLSFLDVGNNS 221 (347)
Q Consensus 163 ~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~~~ 221 (347)
+|++|++++|+++...+..|..+++|++|++++|.+....+.+|..+++|++|++++|+
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence 45555565555554444555556666666666666555555555666666666665554
No 40
>PLN03150 hypothetical protein; Provisional
Probab=98.68 E-value=6.2e-08 Score=91.27 Aligned_cols=89 Identities=35% Similarity=0.621 Sum_probs=57.9
Q ss_pred ccEEEccCCcccCCCccccccCCCCcEEEccCCcccCCCCccccCCCCCCeEEecCCccccCcCccccc-cCCcEEEccc
Q 040206 164 LTSLRLSGNHLEGPLPPSLINCVNLQFLDVGNNNLSGPIPECLGNSTRLSFLDVGNNSLSGPIPECLAN-STLEILDMRM 242 (347)
Q Consensus 164 L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~-~~L~~L~L~~ 242 (347)
++.|+++++.+....|..+..+++|+.|++++|.+.+.+|..+..+++|+.|++++|.+.+..+..+.. ++|+.|+|++
T Consensus 420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~ 499 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNG 499 (623)
T ss_pred EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcC
Confidence 566666666666666666666677777777777666666666666777777777777666555544333 6677777777
Q ss_pred CcccccCChh
Q 040206 243 NKFSGSLPQN 252 (347)
Q Consensus 243 ~~~~~~~~~~ 252 (347)
|.+.+.+|..
T Consensus 500 N~l~g~iP~~ 509 (623)
T PLN03150 500 NSLSGRVPAA 509 (623)
T ss_pred CcccccCChH
Confidence 7766655553
No 41
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.67 E-value=5.8e-09 Score=93.78 Aligned_cols=235 Identities=27% Similarity=0.239 Sum_probs=143.7
Q ss_pred EEEecCCCCCCCChhhhcCCCccEEeccCCcccccCChhhhhcCCCcccEEEcCCCcCCCCCC-CCCCCCcEEEccCCCC
Q 040206 4 KTQVKTCNISEFPDILRTQHQLEWLDLSKNQIRGRIPSWMWDIGVHTLQFLILSQNVLTSIDH-LPWKNLQYLTLDSNLL 82 (347)
Q Consensus 4 ~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~-~~~~~L~~L~l~~~~~ 82 (347)
.+++..+.+..+...+..+++|+.+++.+|++. .+...+. .+++|++|++++|.|+.+.. ..+..|+.|++++|.+
T Consensus 76 ~l~l~~n~i~~~~~~l~~~~~l~~l~l~~n~i~-~i~~~l~--~~~~L~~L~ls~N~I~~i~~l~~l~~L~~L~l~~N~i 152 (414)
T KOG0531|consen 76 ELNLRQNLIAKILNHLSKLKSLEALDLYDNKIE-KIENLLS--SLVNLQVLDLSFNKITKLEGLSTLTLLKELNLSGNLI 152 (414)
T ss_pred hhccchhhhhhhhcccccccceeeeeccccchh-hcccchh--hhhcchheeccccccccccchhhccchhhheeccCcc
Confidence 344555555555555777888888888888887 3333232 34888888888888888777 5667788888888888
Q ss_pred CccCCCC-CCCccEEEcccCcccccCC-ccccCCCCccEEEcccCcccccCCcccCCccccEEECCCCccccccCccCCC
Q 040206 83 QGSLPDL-PPHMVQLLISNNSLTGEIP-SSFCNLSSIQYLNLSNNSLSGQIPQCLGNSTLETLDLGMNNFQGSIPQTNAK 160 (347)
Q Consensus 83 ~~~~~~~-~~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~ 160 (347)
.....-. ++.|+.+++++|.+..+.. . ...+.+++.+.+.+|.+... ...-....+..+.+..|.+....+ +..
T Consensus 153 ~~~~~~~~l~~L~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~~i-~~~~~~~~l~~~~l~~n~i~~~~~--l~~ 228 (414)
T KOG0531|consen 153 SDISGLESLKSLKLLDLSYNRIVDIENDE-LSELISLEELDLGGNSIREI-EGLDLLKKLVLLSLLDNKISKLEG--LNE 228 (414)
T ss_pred hhccCCccchhhhcccCCcchhhhhhhhh-hhhccchHHHhccCCchhcc-cchHHHHHHHHhhcccccceeccC--ccc
Confidence 7543322 6788888888888875544 2 46677888888888877632 222222333344666666542221 222
Q ss_pred CC--CccEEEccCCcccCCCccccccCCCCcEEEccCCcccCCCCccccCCCCCCeEEecCCccccC---cCc--ccccc
Q 040206 161 GC--NLTSLRLSGNHLEGPLPPSLINCVNLQFLDVGNNNLSGPIPECLGNSTRLSFLDVGNNSLSGP---IPE--CLANS 233 (347)
Q Consensus 161 ~~--~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~~~~~~~---~~~--~~~~~ 233 (347)
+. .|+.+++.++++. ..+..+..+..+..+++.++.+... ..+...+.+..+....+.+... ... ....+
T Consensus 229 ~~~~~L~~l~l~~n~i~-~~~~~~~~~~~l~~l~~~~n~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (414)
T KOG0531|consen 229 LVMLHLRELYLSGNRIS-RSPEGLENLKNLPVLDLSSNRISNL--EGLERLPKLSELWLNDNKLALSEAISQEYITSAAP 305 (414)
T ss_pred chhHHHHHHhcccCccc-cccccccccccccccchhhcccccc--ccccccchHHHhccCcchhcchhhhhccccccccc
Confidence 22 3778888888776 3324566677788888887776521 2333444444555555544311 111 22235
Q ss_pred CCcEEEcccCccccc
Q 040206 234 TLEILDMRMNKFSGS 248 (347)
Q Consensus 234 ~L~~L~L~~~~~~~~ 248 (347)
.++...+..+.+...
T Consensus 306 ~~~~~~~~~~~~~~~ 320 (414)
T KOG0531|consen 306 TLVTLTLELNPIRKI 320 (414)
T ss_pred cccccccccCccccc
Confidence 667777777766543
No 42
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.66 E-value=3.3e-09 Score=95.37 Aligned_cols=245 Identities=25% Similarity=0.198 Sum_probs=165.1
Q ss_pred hcCCCccEEeccCCcccccCChhhhhcCCCcccEEEcCCCcCCCCCC--CCCCCCcEEEccCCCCCccCC-CCCCCccEE
Q 040206 20 RTQHQLEWLDLSKNQIRGRIPSWMWDIGVHTLQFLILSQNVLTSIDH--LPWKNLQYLTLDSNLLQGSLP-DLPPHMVQL 96 (347)
Q Consensus 20 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~--~~~~~L~~L~l~~~~~~~~~~-~~~~~L~~L 96 (347)
..+..++.+++..+.+.. +...+. .+.+|+.+++.+|.+..+.. ..+++|++|++++|.++.... ..++.|+.|
T Consensus 69 ~~l~~l~~l~l~~n~i~~-~~~~l~--~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~I~~i~~l~~l~~L~~L 145 (414)
T KOG0531|consen 69 ESLTSLKELNLRQNLIAK-ILNHLS--KLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNKITKLEGLSTLTLLKEL 145 (414)
T ss_pred HHhHhHHhhccchhhhhh-hhcccc--cccceeeeeccccchhhcccchhhhhcchheeccccccccccchhhccchhhh
Confidence 356677777788877763 333333 34899999999999998887 668999999999999986433 334679999
Q ss_pred EcccCcccccCCccccCCCCccEEEcccCcccccCCc-ccCCccccEEECCCCccccccCccCCCCCCccEEEccCCccc
Q 040206 97 LISNNSLTGEIPSSFCNLSSIQYLNLSNNSLSGQIPQ-CLGNSTLETLDLGMNNFQGSIPQTNAKGCNLTSLRLSGNHLE 175 (347)
Q Consensus 97 ~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 175 (347)
++.+|.+..+ ..+..+..|+.+++.+|.+...... .-...+++.+.+.+|.+. ....+..+..+..+.+..+.++
T Consensus 146 ~l~~N~i~~~--~~~~~l~~L~~l~l~~n~i~~ie~~~~~~~~~l~~l~l~~n~i~--~i~~~~~~~~l~~~~l~~n~i~ 221 (414)
T KOG0531|consen 146 NLSGNLISDI--SGLESLKSLKLLDLSYNRIVDIENDELSELISLEELDLGGNSIR--EIEGLDLLKKLVLLSLLDNKIS 221 (414)
T ss_pred eeccCcchhc--cCCccchhhhcccCCcchhhhhhhhhhhhccchHHHhccCCchh--cccchHHHHHHHHhhcccccce
Confidence 9999999744 3455688999999999988855442 245668888889998764 2233344445555577777776
Q ss_pred CCCccccccCCC--CcEEEccCCcccCCCCccccCCCCCCeEEecCCccccCcCccccccCCcEEEcccCcccccCChhh
Q 040206 176 GPLPPSLINCVN--LQFLDVGNNNLSGPIPECLGNSTRLSFLDVGNNSLSGPIPECLANSTLEILDMRMNKFSGSLPQNI 253 (347)
Q Consensus 176 ~~~~~~l~~~~~--L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~ 253 (347)
.. ..+..... |+.+++++|++. ..+..+..+..+..+++..+.+.... ..-..+.+..+....+.+...-..
T Consensus 222 ~~--~~l~~~~~~~L~~l~l~~n~i~-~~~~~~~~~~~l~~l~~~~n~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~-- 295 (414)
T KOG0531|consen 222 KL--EGLNELVMLHLRELYLSGNRIS-RSPEGLENLKNLPVLDLSSNRISNLE-GLERLPKLSELWLNDNKLALSEAI-- 295 (414)
T ss_pred ec--cCcccchhHHHHHHhcccCccc-cccccccccccccccchhhccccccc-cccccchHHHhccCcchhcchhhh--
Confidence 33 22333343 889999999887 33356777888888998888776322 222234556666666665522000
Q ss_pred hccccccCCCcCccCCCCCcEEEccCCccCC
Q 040206 254 CKKLCFGPLPPSLVNCQYLEVLDVGNNQIDD 284 (347)
Q Consensus 254 ~~~~~~~~l~~~~~~~~~L~~L~L~~n~i~~ 284 (347)
.-.......+.+..+.+.++.+..
T Consensus 296 -------~~~~~~~~~~~~~~~~~~~~~~~~ 319 (414)
T KOG0531|consen 296 -------SQEYITSAAPTLVTLTLELNPIRK 319 (414)
T ss_pred -------hccccccccccccccccccCcccc
Confidence 011124566778888888887654
No 43
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.59 E-value=8.7e-08 Score=92.56 Aligned_cols=79 Identities=30% Similarity=0.317 Sum_probs=33.1
Q ss_pred CCccEEEcccCcccccCCccccCCCCccEEEcccCcccccCCcccCCccccEEECCCCccccccCccCCCCCCccEEEc
Q 040206 91 PHMVQLLISNNSLTGEIPSSFCNLSSIQYLNLSNNSLSGQIPQCLGNSTLETLDLGMNNFQGSIPQTNAKGCNLTSLRL 169 (347)
Q Consensus 91 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l 169 (347)
|.|+.||+++|.--...|..++.+-+|++|+++++.+...+...-.+..|.+|++..+......+.....+++|+++.+
T Consensus 571 ~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l 649 (889)
T KOG4658|consen 571 PLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGISHLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRL 649 (889)
T ss_pred cceEEEECCCCCccCcCChHHhhhhhhhcccccCCCccccchHHHHHHhhheeccccccccccccchhhhcccccEEEe
Confidence 4444444444332224444444444444444444444433333333334444444443322223333333444444444
No 44
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.52 E-value=5.3e-09 Score=85.24 Aligned_cols=148 Identities=18% Similarity=0.124 Sum_probs=110.6
Q ss_pred CceEEEecCCCCC-CCChhhhcCCCccEEeccCC-cccccCChhhhhcCCCcccEEEcCCCcCCCCCC-----CCCCCCc
Q 040206 1 KTIKTQVKTCNIS-EFPDILRTQHQLEWLDLSKN-QIRGRIPSWMWDIGVHTLQFLILSQNVLTSIDH-----LPWKNLQ 73 (347)
Q Consensus 1 ~l~~l~l~~~~~~-~~~~~~~~~~~L~~L~l~~~-~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~-----~~~~~L~ 73 (347)
||+.|.+.|..+. .+...+++..+|+.++++.| +++......++. .|+.|..|++++|.+..... .--++|+
T Consensus 211 kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~-scs~L~~LNlsWc~l~~~~Vtv~V~hise~l~ 289 (419)
T KOG2120|consen 211 KLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLS-SCSRLDELNLSWCFLFTEKVTVAVAHISETLT 289 (419)
T ss_pred hhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHH-hhhhHhhcCchHhhccchhhhHHHhhhchhhh
Confidence 5788999999998 77788999999999999988 677555556666 78999999999997655433 1226799
Q ss_pred EEEccCCCCC------ccCCCCCCCccEEEcccC-cccccCCccccCCCCccEEEcccCccc--ccCCcccCCccccEEE
Q 040206 74 YLTLDSNLLQ------GSLPDLPPHMVQLLISNN-SLTGEIPSSFCNLSSIQYLNLSNNSLS--GQIPQCLGNSTLETLD 144 (347)
Q Consensus 74 ~L~l~~~~~~------~~~~~~~~~L~~L~l~~~-~~~~~~~~~~~~l~~L~~L~l~~~~~~--~~~~~~~~~~~L~~L~ 144 (347)
.|+++++.-. .....-+|+|.+||++++ .++......|.+++.|++|.++.|... +..-.+-..++|.+|+
T Consensus 290 ~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY~i~p~~~~~l~s~psl~yLd 369 (419)
T KOG2120|consen 290 QLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLSRCYDIIPETLLELNSKPSLVYLD 369 (419)
T ss_pred hhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeeehhhhcCCChHHeeeeccCcceEEEE
Confidence 9999988643 122333599999999988 455555567888999999999998542 1112222567999999
Q ss_pred CCCCc
Q 040206 145 LGMNN 149 (347)
Q Consensus 145 l~~~~ 149 (347)
+-++-
T Consensus 370 v~g~v 374 (419)
T KOG2120|consen 370 VFGCV 374 (419)
T ss_pred ecccc
Confidence 88864
No 45
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.49 E-value=2.3e-09 Score=97.17 Aligned_cols=128 Identities=25% Similarity=0.254 Sum_probs=72.9
Q ss_pred CccEEEccCCcccCCCccccccCCCCcEEEccCCcccCCCCccccCCCCCCeEEecCCccccCcCccccccCCcEEEccc
Q 040206 163 NLTSLRLSGNHLEGPLPPSLINCVNLQFLDVGNNNLSGPIPECLGNSTRLSFLDVGNNSLSGPIPECLANSTLEILDMRM 242 (347)
Q Consensus 163 ~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~L~~ 242 (347)
+|...+.+.|.+. .+...+.-++.++.|+++.|.+... ..+..++.|++|++++|.++-+........+|..|.+++
T Consensus 165 ~L~~a~fsyN~L~-~mD~SLqll~ale~LnLshNk~~~v--~~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~L~~L~lrn 241 (1096)
T KOG1859|consen 165 KLATASFSYNRLV-LMDESLQLLPALESLNLSHNKFTKV--DNLRRLPKLKHLDLSYNCLRHVPQLSMVGCKLQLLNLRN 241 (1096)
T ss_pred hHhhhhcchhhHH-hHHHHHHHHHHhhhhccchhhhhhh--HHHHhcccccccccccchhccccccchhhhhheeeeecc
Confidence 4555555555554 4444555566666666666666532 355666666666666666653322222224566777777
Q ss_pred CcccccCChhhhccccccCCCcCccCCCCCcEEEccCCccCCcc-chhhhhccCCCEEEcccceeec
Q 040206 243 NKFSGSLPQNICKKLCFGPLPPSLVNCQYLEVLDVGNNQIDDTF-LYWLDVLLQLQVLILRSNRFWG 308 (347)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~i~~~~-~~~~~~l~~L~~l~L~~n~~~~ 308 (347)
|.++.. ..+.++.+|..||+++|-+.+.. ...+..+..|+.|+|.|||+-.
T Consensus 242 N~l~tL---------------~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~c 293 (1096)
T KOG1859|consen 242 NALTTL---------------RGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLCC 293 (1096)
T ss_pred cHHHhh---------------hhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCcccc
Confidence 766521 12455666777777777665422 1234456677777777777653
No 46
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.48 E-value=1.1e-09 Score=99.14 Aligned_cols=194 Identities=26% Similarity=0.287 Sum_probs=124.1
Q ss_pred CCccEEeccCCcccccC-ChhhhhcCCCcccEEEcCCCcCCCCCC-CCC-CCCcEEEccCCC---------CCccCCCCC
Q 040206 23 HQLEWLDLSKNQIRGRI-PSWMWDIGVHTLQFLILSQNVLTSIDH-LPW-KNLQYLTLDSNL---------LQGSLPDLP 90 (347)
Q Consensus 23 ~~L~~L~l~~~~~~~~~-~~~~~~~~~~~L~~L~l~~~~l~~~~~-~~~-~~L~~L~l~~~~---------~~~~~~~~~ 90 (347)
++++.+.+-...-.+.. |-.++.. ..|+.|.++++++..... ..+ .+|++|...+.- ..+.+...+
T Consensus 84 qkt~~lkl~~~pa~~pt~pi~ifpF--~sLr~LElrg~~L~~~~GL~~lr~qLe~LIC~~Sl~Al~~v~ascggd~~ns~ 161 (1096)
T KOG1859|consen 84 QKTKVLKLLPSPARDPTEPISIFPF--RSLRVLELRGCDLSTAKGLQELRHQLEKLICHNSLDALRHVFASCGGDISNSP 161 (1096)
T ss_pred hhheeeeecccCCCCCCCCceeccc--cceeeEEecCcchhhhhhhHHHHHhhhhhhhhccHHHHHHHHHHhccccccch
Confidence 34444444333322222 4455544 788888888887766433 111 345555433210 012223333
Q ss_pred --CCccEEEcccCcccccCCccccCCCCccEEEcccCcccccCCcccCCccccEEECCCCccccccCccCCCCCCccEEE
Q 040206 91 --PHMVQLLISNNSLTGEIPSSFCNLSSIQYLNLSNNSLSGQIPQCLGNSTLETLDLGMNNFQGSIPQTNAKGCNLTSLR 168 (347)
Q Consensus 91 --~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ 168 (347)
..|...++++|.+. .+...+.-++.++.|+++.|.++... ....++.|++|++++|.+. .+|..-..-++|+.|.
T Consensus 162 ~Wn~L~~a~fsyN~L~-~mD~SLqll~ale~LnLshNk~~~v~-~Lr~l~~LkhLDlsyN~L~-~vp~l~~~gc~L~~L~ 238 (1096)
T KOG1859|consen 162 VWNKLATASFSYNRLV-LMDESLQLLPALESLNLSHNKFTKVD-NLRRLPKLKHLDLSYNCLR-HVPQLSMVGCKLQLLN 238 (1096)
T ss_pred hhhhHhhhhcchhhHH-hHHHHHHHHHHhhhhccchhhhhhhH-HHHhcccccccccccchhc-cccccchhhhhheeee
Confidence 45667777888877 55567777888999999999888443 5557788999999999887 5554444445689999
Q ss_pred ccCCcccCCCccccccCCCCcEEEccCCcccCC-CCccccCCCCCCeEEecCCccc
Q 040206 169 LSGNHLEGPLPPSLINCVNLQFLDVGNNNLSGP-IPECLGNSTRLSFLDVGNNSLS 223 (347)
Q Consensus 169 l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~-~~~~l~~~~~L~~L~l~~~~~~ 223 (347)
+.+|.+++. .++.++.+|+.||+++|-+.+. -...+..+..|+.|.+.+|++.
T Consensus 239 lrnN~l~tL--~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~ 292 (1096)
T KOG1859|consen 239 LRNNALTTL--RGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLC 292 (1096)
T ss_pred ecccHHHhh--hhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccc
Confidence 999888744 5678888899999999876531 1223455667888888888764
No 47
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.40 E-value=5.1e-09 Score=89.04 Aligned_cols=138 Identities=22% Similarity=0.149 Sum_probs=75.6
Q ss_pred CCCccEEEccCCcc-cCCCcccc-ccCCCCcEEEccCCcc-cCCCCccc-cCCCCCCeEEecCCccccCc---Ccccccc
Q 040206 161 GCNLTSLRLSGNHL-EGPLPPSL-INCVNLQFLDVGNNNL-SGPIPECL-GNSTRLSFLDVGNNSLSGPI---PECLANS 233 (347)
Q Consensus 161 ~~~L~~L~l~~~~~-~~~~~~~l-~~~~~L~~L~l~~n~~-~~~~~~~l-~~~~~L~~L~l~~~~~~~~~---~~~~~~~ 233 (347)
+.+|+.+..+++.- ++.....+ .++++|+.+-+.+|.. .+.-...+ ..++.|+.+++.++...... ......+
T Consensus 293 c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~ 372 (483)
T KOG4341|consen 293 CHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCP 372 (483)
T ss_pred hhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCc
Confidence 34566666666532 21111122 3456777777777642 21111122 24667777777766533222 1122236
Q ss_pred CCcEEEcccC-cccccCChhhhccccccCCCcCccCCCCCcEEEccCCcc-CCccchhhhhccCCCEEEcccceee
Q 040206 234 TLEILDMRMN-KFSGSLPQNICKKLCFGPLPPSLVNCQYLEVLDVGNNQI-DDTFLYWLDVLLQLQVLILRSNRFW 307 (347)
Q Consensus 234 ~L~~L~L~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~i-~~~~~~~~~~l~~L~~l~L~~n~~~ 307 (347)
.|+.+.+++| .+++++.. .+...-.+...|+.+.++++.. ++...+.+..+++|+.+++.++.-.
T Consensus 373 ~lr~lslshce~itD~gi~---------~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q~v 439 (483)
T KOG4341|consen 373 RLRVLSLSHCELITDEGIR---------HLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQDV 439 (483)
T ss_pred hhccCChhhhhhhhhhhhh---------hhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeechhhh
Confidence 7777777777 34433111 1122233456788888888865 3455566777888888888888743
No 48
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.40 E-value=1.2e-07 Score=77.55 Aligned_cols=190 Identities=21% Similarity=0.147 Sum_probs=94.4
Q ss_pred CCCccEEEcccCcccc--cCCccccCCCCccEEEcccCcccccCCcc-cCCccccEEECCCCcccc-ccCccCCCCCCcc
Q 040206 90 PPHMVQLLISNNSLTG--EIPSSFCNLSSIQYLNLSNNSLSGQIPQC-LGNSTLETLDLGMNNFQG-SIPQTNAKGCNLT 165 (347)
Q Consensus 90 ~~~L~~L~l~~~~~~~--~~~~~~~~l~~L~~L~l~~~~~~~~~~~~-~~~~~L~~L~l~~~~~~~-~~~~~~~~~~~L~ 165 (347)
..+++++++.+|.+++ .+...+.++|.|+.|+++.|.+...+... ....+|+.|.+.+..+.. .....+..+|.++
T Consensus 70 ~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vt 149 (418)
T KOG2982|consen 70 VTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKVT 149 (418)
T ss_pred hhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhhh
Confidence 3667777777776652 22334556777777777777766444333 233466666666654431 1223444555566
Q ss_pred EEEccCCcccCC--Cccccc-cCCCCcEEEccCCcccCCCCccccCCCCCCeEEecCCccccCcCccccccCCcEEEccc
Q 040206 166 SLRLSGNHLEGP--LPPSLI-NCVNLQFLDVGNNNLSGPIPECLGNSTRLSFLDVGNNSLSGPIPECLANSTLEILDMRM 242 (347)
Q Consensus 166 ~L~l~~~~~~~~--~~~~l~-~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~L~~ 242 (347)
+++++.|.+... ...... .-+.++++....|... +...-|++. -.++++..+-+..
T Consensus 150 elHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~---------------~w~~~~~l~------r~Fpnv~sv~v~e 208 (418)
T KOG2982|consen 150 ELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQ---------------LWLNKNKLS------RIFPNVNSVFVCE 208 (418)
T ss_pred hhhhccchhhhhccccccccccchhhhhhhcCCcHHH---------------HHHHHHhHH------hhcccchheeeec
Confidence 665555532211 000011 1123333333333221 000001111 0113444444554
Q ss_pred CcccccCChhhhccccccCCCcCccCCCCCcEEEccCCccCC-ccchhhhhccCCCEEEcccceeecccCC
Q 040206 243 NKFSGSLPQNICKKLCFGPLPPSLVNCQYLEVLDVGNNQIDD-TFLYWLDVLLQLQVLILRSNRFWGPIGK 312 (347)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~i~~-~~~~~~~~l~~L~~l~L~~n~~~~~~~~ 312 (347)
|.+...-. ...+..++.+.-|+|+.+.|.+ ...+.+..++.|.-|.++++|+.+.+..
T Consensus 209 ~PlK~~s~------------ek~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l~~ 267 (418)
T KOG2982|consen 209 GPLKTESS------------EKGSEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLSDPLRG 267 (418)
T ss_pred Ccccchhh------------cccCCCCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCcccccccC
Confidence 54443211 1233445556677777777765 2235577788888888888887776554
No 49
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.40 E-value=8.3e-08 Score=78.42 Aligned_cols=200 Identities=23% Similarity=0.223 Sum_probs=127.3
Q ss_pred ccEEeccCCcccccCChhhhhcCCCcccEEEcCCCcCCCCCC-----CCCCCCcEEEccCCCCCccCCCCC---CCccEE
Q 040206 25 LEWLDLSKNQIRGRIPSWMWDIGVHTLQFLILSQNVLTSIDH-----LPWKNLQYLTLDSNLLQGSLPDLP---PHMVQL 96 (347)
Q Consensus 25 L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~-----~~~~~L~~L~l~~~~~~~~~~~~~---~~L~~L 96 (347)
++.+.+.++.|.+......+...+..++.+++.+|.++++.. .++|.|++|+++.|++...+...+ .+|+.|
T Consensus 47 ~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~l 126 (418)
T KOG2982|consen 47 LELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVL 126 (418)
T ss_pred hhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEE
Confidence 335556666665444333332256889999999999888776 678999999999999886655553 788999
Q ss_pred EcccCccc-ccCCccccCCCCccEEEcccCcccc--cCCccc--CCccccEEECCCCcccccc--CccCCCCCCccEEEc
Q 040206 97 LISNNSLT-GEIPSSFCNLSSIQYLNLSNNSLSG--QIPQCL--GNSTLETLDLGMNNFQGSI--PQTNAKGCNLTSLRL 169 (347)
Q Consensus 97 ~l~~~~~~-~~~~~~~~~l~~L~~L~l~~~~~~~--~~~~~~--~~~~L~~L~l~~~~~~~~~--~~~~~~~~~L~~L~l 169 (347)
.+.+..+. ......+..+|.++.|.++.|..-. ...... ..+.++++....|...... ...-..+|++..+.+
T Consensus 127 VLNgT~L~w~~~~s~l~~lP~vtelHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v 206 (418)
T KOG2982|consen 127 VLNGTGLSWTQSTSSLDDLPKVTELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVFV 206 (418)
T ss_pred EEcCCCCChhhhhhhhhcchhhhhhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcccchheee
Confidence 99888765 2334456678888888888884321 111111 1235666666666543211 112223467777777
Q ss_pred cCCcccCC-CccccccCCCCcEEEccCCcccCC-CCccccCCCCCCeEEecCCcccc
Q 040206 170 SGNHLEGP-LPPSLINCVNLQFLDVGNNNLSGP-IPECLGNSTRLSFLDVGNNSLSG 224 (347)
Q Consensus 170 ~~~~~~~~-~~~~l~~~~~L~~L~l~~n~~~~~-~~~~l~~~~~L~~L~l~~~~~~~ 224 (347)
..|.+.+. ..+....++.+-.|+++.+++.+. ..+.+..+++|+.|.+.++++.+
T Consensus 207 ~e~PlK~~s~ek~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d 263 (418)
T KOG2982|consen 207 CEGPLKTESSEKGSEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLSD 263 (418)
T ss_pred ecCcccchhhcccCCCCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCcccc
Confidence 77765422 223445566677788888877632 22456778888888888887653
No 50
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.21 E-value=1.6e-05 Score=69.65 Aligned_cols=137 Identities=18% Similarity=0.181 Sum_probs=68.4
Q ss_pred hhcCCCccEEeccCCcccccCChhhhhcCCCcccEEEcCCC-cCCCCCCCCCCCCcEEEccCCCCCccCCCCCCCccEEE
Q 040206 19 LRTQHQLEWLDLSKNQIRGRIPSWMWDIGVHTLQFLILSQN-VLTSIDHLPWKNLQYLTLDSNLLQGSLPDLPPHMVQLL 97 (347)
Q Consensus 19 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~-~l~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~L~~L~ 97 (347)
+..+++++.|++++|.+. .+|. + . .+|++|.++++ .++.++..-.++|+.|.+++|... ..++++|+.|+
T Consensus 48 ~~~~~~l~~L~Is~c~L~-sLP~-L--P--~sLtsL~Lsnc~nLtsLP~~LP~nLe~L~Ls~Cs~L---~sLP~sLe~L~ 118 (426)
T PRK15386 48 IEEARASGRLYIKDCDIE-SLPV-L--P--NELTEITIENCNNLTTLPGSIPEGLEKLTVCHCPEI---SGLPESVRSLE 118 (426)
T ss_pred HHHhcCCCEEEeCCCCCc-ccCC-C--C--CCCcEEEccCCCCcccCCchhhhhhhheEccCcccc---cccccccceEE
Confidence 344677777777777666 5552 1 1 35777777764 444444333356777777766311 23445666666
Q ss_pred cccCcccccCCccccCC-CCccEEEcccCcccccCC-cccCCccccEEECCCCccccccCccCCCCCCccEEEccCC
Q 040206 98 ISNNSLTGEIPSSFCNL-SSIQYLNLSNNSLSGQIP-QCLGNSTLETLDLGMNNFQGSIPQTNAKGCNLTSLRLSGN 172 (347)
Q Consensus 98 l~~~~~~~~~~~~~~~l-~~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~ 172 (347)
+.++.... +..+ ++|+.|.+.++....... ...-.++|+.|.+++|... ..|..+. ..|+.|.++.+
T Consensus 119 L~~n~~~~-----L~~LPssLk~L~I~~~n~~~~~~lp~~LPsSLk~L~Is~c~~i-~LP~~LP--~SLk~L~ls~n 187 (426)
T PRK15386 119 IKGSATDS-----IKNVPNGLTSLSINSYNPENQARIDNLISPSLKTLSLTGCSNI-ILPEKLP--ESLQSITLHIE 187 (426)
T ss_pred eCCCCCcc-----cccCcchHhheeccccccccccccccccCCcccEEEecCCCcc-cCccccc--ccCcEEEeccc
Confidence 65544331 2222 245555554322110000 0011236677777666543 2333222 46666666544
No 51
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.20 E-value=8.2e-08 Score=77.46 Aligned_cols=220 Identities=20% Similarity=0.188 Sum_probs=101.0
Q ss_pred hhcCCCccEEeccCCcccccCChhhhhc--CCCcccEEEcCCCcCCCCC-------------CCCCCCCcEEEccCCCCC
Q 040206 19 LRTQHQLEWLDLSKNQIRGRIPSWMWDI--GVHTLQFLILSQNVLTSID-------------HLPWKNLQYLTLDSNLLQ 83 (347)
Q Consensus 19 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~--~~~~L~~L~l~~~~l~~~~-------------~~~~~~L~~L~l~~~~~~ 83 (347)
+.-+..++.+++++|.|.+.-..++.+. .-.+|+..++++--..... ..+|++|+..++++|.++
T Consensus 26 l~~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg 105 (388)
T COG5238 26 LEMMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFG 105 (388)
T ss_pred HHhhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccC
Confidence 3446777777888777765554444331 1145666665543111110 034566666666666655
Q ss_pred ccCCCCC-------CCccEEEcccCcccccCCccccCCCCccEEEcccCcccccCCcccCCccccEEECCCCccccc---
Q 040206 84 GSLPDLP-------PHMVQLLISNNSLTGEIPSSFCNLSSIQYLNLSNNSLSGQIPQCLGNSTLETLDLGMNNFQGS--- 153 (347)
Q Consensus 84 ~~~~~~~-------~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~--- 153 (347)
...+..+ ..|++|.+++|.+-.+-...++. .|++|- ........+.|+.+....|++..-
T Consensus 106 ~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigk--al~~la--------~nKKaa~kp~Le~vicgrNRlengs~~ 175 (388)
T COG5238 106 SEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGK--ALFHLA--------YNKKAADKPKLEVVICGRNRLENGSKE 175 (388)
T ss_pred cccchHHHHHHhcCCCceeEEeecCCCCccchhHHHH--HHHHHH--------HHhhhccCCCceEEEeccchhccCcHH
Confidence 3332221 34444444444433111111110 000000 000111223455555555544210
Q ss_pred -cCccCCCCCCccEEEccCCcccCCCc-----cccccCCCCcEEEccCCcccC----CCCccccCCCCCCeEEecCCccc
Q 040206 154 -IPQTNAKGCNLTSLRLSGNHLEGPLP-----PSLINCVNLQFLDVGNNNLSG----PIPECLGNSTRLSFLDVGNNSLS 223 (347)
Q Consensus 154 -~~~~~~~~~~L~~L~l~~~~~~~~~~-----~~l~~~~~L~~L~l~~n~~~~----~~~~~l~~~~~L~~L~l~~~~~~ 223 (347)
....+..-..|+.+.+..|.+..... ..+..+.+|+.||+.+|.++. .+..++..++.|+.|.+..|-++
T Consensus 176 ~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDClls 255 (388)
T COG5238 176 LSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCLLS 255 (388)
T ss_pred HHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhccccchhhc
Confidence 00112222356666666665542211 122345677777777776542 22334556666777777777665
Q ss_pred cCcCcccc-------ccCCcEEEcccCccccc
Q 040206 224 GPIPECLA-------NSTLEILDMRMNKFSGS 248 (347)
Q Consensus 224 ~~~~~~~~-------~~~L~~L~L~~~~~~~~ 248 (347)
..+....- .++|..|...||.+.+.
T Consensus 256 ~~G~~~v~~~f~e~~~p~l~~L~~~Yne~~~~ 287 (388)
T COG5238 256 NEGVKSVLRRFNEKFVPNLMPLPGDYNERRGG 287 (388)
T ss_pred cccHHHHHHHhhhhcCCCccccccchhhhcCc
Confidence 44332211 15666666666655543
No 52
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=98.16 E-value=3.9e-06 Score=64.98 Aligned_cols=100 Identities=24% Similarity=0.326 Sum_probs=51.8
Q ss_pred CcccEEEcCCCcCCCCCC-CCCCCCcEEEccCCCCCccCCCC---CCCccEEEcccCccccc-CCccccCCCCccEEEcc
Q 040206 49 HTLQFLILSQNVLTSIDH-LPWKNLQYLTLDSNLLQGSLPDL---PPHMVQLLISNNSLTGE-IPSSFCNLSSIQYLNLS 123 (347)
Q Consensus 49 ~~L~~L~l~~~~l~~~~~-~~~~~L~~L~l~~~~~~~~~~~~---~~~L~~L~l~~~~~~~~-~~~~~~~l~~L~~L~l~ 123 (347)
.+...++|++|.+...+. ..++.|..|.+..|.++.+-+.+ .++|..|.+.+|+++.. .-.-+..++.|++|.+-
T Consensus 42 d~~d~iDLtdNdl~~l~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltll 121 (233)
T KOG1644|consen 42 DQFDAIDLTDNDLRKLDNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTLL 121 (233)
T ss_pred cccceecccccchhhcccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceeeec
Confidence 345555555555544443 34455556666655555433322 35566666666655521 11234556666777666
Q ss_pred cCcccccCCc----ccCCccccEEECCCC
Q 040206 124 NNSLSGQIPQ----CLGNSTLETLDLGMN 148 (347)
Q Consensus 124 ~~~~~~~~~~----~~~~~~L~~L~l~~~ 148 (347)
+|+++..... ....++|+.|+++.-
T Consensus 122 ~Npv~~k~~YR~yvl~klp~l~~LDF~kV 150 (233)
T KOG1644|consen 122 GNPVEHKKNYRLYVLYKLPSLRTLDFQKV 150 (233)
T ss_pred CCchhcccCceeEEEEecCcceEeehhhh
Confidence 6666533221 113356677766654
No 53
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.14 E-value=1.4e-07 Score=68.25 Aligned_cols=105 Identities=19% Similarity=0.244 Sum_probs=59.2
Q ss_pred EEecCCCCCCCChhh---hcCCCccEEeccCCcccccCChhhhhcCCCcccEEEcCCCcCCCCCC--CCCCCCcEEEccC
Q 040206 5 TQVKTCNISEFPDIL---RTQHQLEWLDLSKNQIRGRIPSWMWDIGVHTLQFLILSQNVLTSIDH--LPWKNLQYLTLDS 79 (347)
Q Consensus 5 l~l~~~~~~~~~~~~---~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~--~~~~~L~~L~l~~ 79 (347)
++|+.|.+-.+++++ .+..+|+.+++++|.+. .+|+.+.. .++.++++++.+|.+.+++. ..++.|+.|+++.
T Consensus 32 ldLssc~lm~i~davy~l~~~~el~~i~ls~N~fk-~fp~kft~-kf~t~t~lNl~~neisdvPeE~Aam~aLr~lNl~~ 109 (177)
T KOG4579|consen 32 LDLSSCQLMYIADAVYMLSKGYELTKISLSDNGFK-KFPKKFTI-KFPTATTLNLANNEISDVPEELAAMPALRSLNLRF 109 (177)
T ss_pred cccccchhhHHHHHHHHHhCCceEEEEecccchhh-hCCHHHhh-ccchhhhhhcchhhhhhchHHHhhhHHhhhccccc
Confidence 455566555454433 34455555666666665 55555554 33456666666666655555 3445555555555
Q ss_pred CCCCccCCCCCCCccEEEcccCcccccCCccccCCCCccEEEcccCcccccCCc
Q 040206 80 NLLQGSLPDLPPHMVQLLISNNSLTGEIPSSFCNLSSIQYLNLSNNSLSGQIPQ 133 (347)
Q Consensus 80 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~ 133 (347)
|++. ..|..+..+.++-.|+..++.+.+++..
T Consensus 110 N~l~----------------------~~p~vi~~L~~l~~Lds~~na~~eid~d 141 (177)
T KOG4579|consen 110 NPLN----------------------AEPRVIAPLIKLDMLDSPENARAEIDVD 141 (177)
T ss_pred Cccc----------------------cchHHHHHHHhHHHhcCCCCccccCcHH
Confidence 5544 4455555566666677776666655544
No 54
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.11 E-value=4.3e-05 Score=66.97 Aligned_cols=135 Identities=16% Similarity=0.237 Sum_probs=90.1
Q ss_pred CceEEEecCCCCCCCChhhhcCCCccEEeccCCcccccCChhhhhcCCCcccEEEcCCC-cCCCCCCCCCCCCcEEEccC
Q 040206 1 KTIKTQVKTCNISEFPDILRTQHQLEWLDLSKNQIRGRIPSWMWDIGVHTLQFLILSQN-VLTSIDHLPWKNLQYLTLDS 79 (347)
Q Consensus 1 ~l~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~-~l~~~~~~~~~~L~~L~l~~ 79 (347)
++++|++++|.++.+|. +. .+|+.|.+++|.--..+|..+. ++|+.|.+++| .+..++ .+|+.|++..
T Consensus 53 ~l~~L~Is~c~L~sLP~-LP--~sLtsL~Lsnc~nLtsLP~~LP----~nLe~L~Ls~Cs~L~sLP----~sLe~L~L~~ 121 (426)
T PRK15386 53 ASGRLYIKDCDIESLPV-LP--NELTEITIENCNNLTTLPGSIP----EGLEKLTVCHCPEISGLP----ESVRSLEIKG 121 (426)
T ss_pred CCCEEEeCCCCCcccCC-CC--CCCcEEEccCCCCcccCCchhh----hhhhheEccCcccccccc----cccceEEeCC
Confidence 36789999999998883 22 4699999998754446675542 68999999998 565443 4688898876
Q ss_pred CCCCccCCCCCCCccEEEcccCcccccCCccccCCCCccEEEcccCcccccCCcccCCccccEEECCCCc
Q 040206 80 NLLQGSLPDLPPHMVQLLISNNSLTGEIPSSFCNLSSIQYLNLSNNSLSGQIPQCLGNSTLETLDLGMNN 149 (347)
Q Consensus 80 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~ 149 (347)
+... .+..++++|+.|.+.++.-.......-.-.++|++|.+.+|.....+.. + ..+|+.|+++.+.
T Consensus 122 n~~~-~L~~LPssLk~L~I~~~n~~~~~~lp~~LPsSLk~L~Is~c~~i~LP~~-L-P~SLk~L~ls~n~ 188 (426)
T PRK15386 122 SATD-SIKNVPNGLTSLSINSYNPENQARIDNLISPSLKTLSLTGCSNIILPEK-L-PESLQSITLHIEQ 188 (426)
T ss_pred CCCc-ccccCcchHhheeccccccccccccccccCCcccEEEecCCCcccCccc-c-cccCcEEEecccc
Confidence 6554 3556778899999865331101100001125899999998876532221 1 2489999987753
No 55
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.11 E-value=3.5e-06 Score=49.06 Aligned_cols=36 Identities=28% Similarity=0.375 Sum_probs=22.8
Q ss_pred CceEEEecCCCCCCCChhhhcCCCccEEeccCCccc
Q 040206 1 KTIKTQVKTCNISEFPDILRTQHQLEWLDLSKNQIR 36 (347)
Q Consensus 1 ~l~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 36 (347)
+|++|++++|+++.+|..++++++|+.|++++|+++
T Consensus 2 ~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 2 NLEELDLSNNQITDLPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp T-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCCS
T ss_pred cceEEEccCCCCcccCchHhCCCCCCEEEecCCCCC
Confidence 356666666666666666666666666666666665
No 56
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.01 E-value=1.4e-06 Score=70.48 Aligned_cols=233 Identities=18% Similarity=0.121 Sum_probs=133.2
Q ss_pred CCCCcEEEccCCCCCccCCCCC-------CCccEEEcccCccc---c-------cCCccccCCCCccEEEcccCcccccC
Q 040206 69 WKNLQYLTLDSNLLQGSLPDLP-------PHMVQLLISNNSLT---G-------EIPSSFCNLSSIQYLNLSNNSLSGQI 131 (347)
Q Consensus 69 ~~~L~~L~l~~~~~~~~~~~~~-------~~L~~L~l~~~~~~---~-------~~~~~~~~l~~L~~L~l~~~~~~~~~ 131 (347)
+..+..+++++|.+++..+..+ .+|+..+++.-... + ....++-+|+.|+..++++|.+....
T Consensus 29 ~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~~ 108 (388)
T COG5238 29 MDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSEF 108 (388)
T ss_pred hcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCccc
Confidence 4678889999998875433221 56666666654321 1 22234556788888888888776444
Q ss_pred Cccc-----CCccccEEECCCCccccccCcc-------------CCCCCCccEEEccCCcccCCCc----cccccCCCCc
Q 040206 132 PQCL-----GNSTLETLDLGMNNFQGSIPQT-------------NAKGCNLTSLRLSGNHLEGPLP----PSLINCVNLQ 189 (347)
Q Consensus 132 ~~~~-----~~~~L~~L~l~~~~~~~~~~~~-------------~~~~~~L~~L~l~~~~~~~~~~----~~l~~~~~L~ 189 (347)
+... ....|.+|.+++|.+....... ...-|.|+.+....|++..... ..+.....|+
T Consensus 109 ~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRlengs~~~~a~~l~sh~~lk 188 (388)
T COG5238 109 PEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLENGSKELSAALLESHENLK 188 (388)
T ss_pred chHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhccCcHHHHHHHHHhhcCce
Confidence 4322 2347888888888664221111 2233677777777777652211 1223335677
Q ss_pred EEEccCCcccCCC-----CccccCCCCCCeEEecCCccccCcCccccc-----cCCcEEEcccCcccccCChhhhccccc
Q 040206 190 FLDVGNNNLSGPI-----PECLGNSTRLSFLDVGNNSLSGPIPECLAN-----STLEILDMRMNKFSGSLPQNICKKLCF 259 (347)
Q Consensus 190 ~L~l~~n~~~~~~-----~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~-----~~L~~L~L~~~~~~~~~~~~~~~~~~~ 259 (347)
.+.+..|.|.... -..+..+.+|+.|+++.|.++-....+++. +.|+.|.+..|-++..+...+.+...-
T Consensus 189 ~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDClls~~G~~~v~~~f~e 268 (388)
T COG5238 189 EVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCLLSNEGVKSVLRRFNE 268 (388)
T ss_pred eEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhccccchhhccccHHHHHHHhhh
Confidence 7777777775221 112346677888888887776444333222 456777777777776655543221100
Q ss_pred cCCCcCccCCCCCcEEEccCCccCCcc------chh-hhhccCCCEEEcccceeec
Q 040206 260 GPLPPSLVNCQYLEVLDVGNNQIDDTF------LYW-LDVLLQLQVLILRSNRFWG 308 (347)
Q Consensus 260 ~~l~~~~~~~~~L~~L~L~~n~i~~~~------~~~-~~~l~~L~~l~L~~n~~~~ 308 (347)
...|+|..|.+.+|.+.... +.. -..+|-|..+.+.||++..
T Consensus 269 -------~~~p~l~~L~~~Yne~~~~~i~~~~l~~~e~~~~p~L~~le~ngNr~~E 317 (388)
T COG5238 269 -------KFVPNLMPLPGDYNERRGGIILDISLNEFEQDAVPLLVDLERNGNRIKE 317 (388)
T ss_pred -------hcCCCccccccchhhhcCceeeeechhhhhhcccHHHHHHHHccCcchh
Confidence 12456677777777553211 111 1246677777777777754
No 57
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=98.01 E-value=7.8e-06 Score=63.34 Aligned_cols=121 Identities=21% Similarity=0.269 Sum_probs=85.3
Q ss_pred eEEEecCCCCCCCChhhhcCCCccEEeccCCcccccCChhhhhcCCCcccEEEcCCCcCCCCCC---CCCCCCcEEEccC
Q 040206 3 IKTQVKTCNISEFPDILRTQHQLEWLDLSKNQIRGRIPSWMWDIGVHTLQFLILSQNVLTSIDH---LPWKNLQYLTLDS 79 (347)
Q Consensus 3 ~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~---~~~~~L~~L~l~~ 79 (347)
++++|++..+..+...=....+...+++++|.+. .++..- +++.|.+|.+.+|.|+.+.+ ..+++|+.|.+.+
T Consensus 22 ~e~~LR~lkip~ienlg~~~d~~d~iDLtdNdl~-~l~~lp---~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~Ltn 97 (233)
T KOG1644|consen 22 RELDLRGLKIPVIENLGATLDQFDAIDLTDNDLR-KLDNLP---HLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTN 97 (233)
T ss_pred cccccccccccchhhccccccccceecccccchh-hcccCC---CccccceEEecCCcceeeccchhhhccccceEEecC
Confidence 4566666666655442234467778889888876 332222 45889999999999998887 4568899999999
Q ss_pred CCCCcc----CCCCCCCccEEEcccCccccc---CCccccCCCCccEEEcccCcc
Q 040206 80 NLLQGS----LPDLPPHMVQLLISNNSLTGE---IPSSFCNLSSIQYLNLSNNSL 127 (347)
Q Consensus 80 ~~~~~~----~~~~~~~L~~L~l~~~~~~~~---~~~~~~~l~~L~~L~l~~~~~ 127 (347)
|.+... ....+|+|++|.+-+|.+... -...+..+++|+.||+.+..-
T Consensus 98 Nsi~~l~dl~pLa~~p~L~~Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~kVt~ 152 (233)
T KOG1644|consen 98 NSIQELGDLDPLASCPKLEYLTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQKVTR 152 (233)
T ss_pred cchhhhhhcchhccCCccceeeecCCchhcccCceeEEEEecCcceEeehhhhhH
Confidence 887642 223358999999999987732 234577899999999877543
No 58
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.98 E-value=5.5e-06 Score=48.24 Aligned_cols=36 Identities=42% Similarity=0.366 Sum_probs=19.9
Q ss_pred CCcEEEccCCccCCccchhhhhccCCCEEEcccceee
Q 040206 271 YLEVLDVGNNQIDDTFLYWLDVLLQLQVLILRSNRFW 307 (347)
Q Consensus 271 ~L~~L~L~~n~i~~~~~~~~~~l~~L~~l~L~~n~~~ 307 (347)
+|++|++++|+|++..+ .++.+++|+.|++++|+++
T Consensus 2 ~L~~L~l~~N~i~~l~~-~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 2 NLEELDLSNNQITDLPP-ELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp T-SEEEETSSS-SSHGG-HGTTCTTSSEEEETSSCCS
T ss_pred cceEEEccCCCCcccCc-hHhCCCCCCEEEecCCCCC
Confidence 45666666666664332 3556666666666666655
No 59
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=97.96 E-value=2.1e-07 Score=79.53 Aligned_cols=287 Identities=18% Similarity=0.160 Sum_probs=175.6
Q ss_pred ceEEEecCCCCC---CCChhhhcCCCccEEeccCC-cccccCChhhhhcCCCcccEEEcCCC-cCCCCCC----CCCCCC
Q 040206 2 TIKTQVKTCNIS---EFPDILRTQHQLEWLDLSKN-QIRGRIPSWMWDIGVHTLQFLILSQN-VLTSIDH----LPWKNL 72 (347)
Q Consensus 2 l~~l~l~~~~~~---~~~~~~~~~~~L~~L~l~~~-~~~~~~~~~~~~~~~~~L~~L~l~~~-~l~~~~~----~~~~~L 72 (347)
++.|.++||.-. .+-.+-.++|+++.|.+.+| ++++..-..+.+ .|++|++|++..| .+++... ..+++|
T Consensus 140 lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~-~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL 218 (483)
T KOG4341|consen 140 LKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLAR-YCRKLRHLNLHSCSSITDVSLKYLAEGCRKL 218 (483)
T ss_pred cccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHH-hcchhhhhhhcccchhHHHHHHHHHHhhhhH
Confidence 678888888544 33346678999999999999 566555556666 7899999999885 4555443 567899
Q ss_pred cEEEccCCCCC-c----cCCCCCCCccEEEcccCcccc--cCCccccCCCCccEEEcccCc-ccccC--CcccCCccccE
Q 040206 73 QYLTLDSNLLQ-G----SLPDLPPHMVQLLISNNSLTG--EIPSSFCNLSSIQYLNLSNNS-LSGQI--PQCLGNSTLET 142 (347)
Q Consensus 73 ~~L~l~~~~~~-~----~~~~~~~~L~~L~l~~~~~~~--~~~~~~~~l~~L~~L~l~~~~-~~~~~--~~~~~~~~L~~ 142 (347)
+++++++|..- + ........++.+...+|.=.. .+...-+.+..+.++++..|. ++... ....++..|+.
T Consensus 219 ~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq~ 298 (483)
T KOG4341|consen 219 KYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHALQV 298 (483)
T ss_pred HHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHHHhhhhhHhhh
Confidence 99999998743 2 222333556666666553110 001111233445555554542 22111 11124557888
Q ss_pred EECCCCcccc--ccCccCCCCCCccEEEccCCc-ccCCCcccc-ccCCCCcEEEccCCccc--CCCCccccCCCCCCeEE
Q 040206 143 LDLGMNNFQG--SIPQTNAKGCNLTSLRLSGNH-LEGPLPPSL-INCVNLQFLDVGNNNLS--GPIPECLGNSTRLSFLD 216 (347)
Q Consensus 143 L~l~~~~~~~--~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~l-~~~~~L~~L~l~~n~~~--~~~~~~l~~~~~L~~L~ 216 (347)
+..+++.... .....-.+.++|+.+.+.+|+ +++.....+ ++++.|+.+++.++... +.+...-.+++.|+.+.
T Consensus 299 l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~ls 378 (483)
T KOG4341|consen 299 LCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRLRVLS 378 (483)
T ss_pred hcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCchhccCC
Confidence 8888875321 112233455789999999986 333322233 35788999999887653 22333345788999999
Q ss_pred ecCCcc-ccCcCcc-----ccccCCcEEEcccCcccccCChhhhccccccCCCcCccCCCCCcEEEccCCcc-CCccc-h
Q 040206 217 VGNNSL-SGPIPEC-----LANSTLEILDMRMNKFSGSLPQNICKKLCFGPLPPSLVNCQYLEVLDVGNNQI-DDTFL-Y 288 (347)
Q Consensus 217 l~~~~~-~~~~~~~-----~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~i-~~~~~-~ 288 (347)
++.|.. ++.+... -....++.+.|++++..-+ ..-..+..|++|+.+++-++.- +.... .
T Consensus 379 lshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d------------~~Le~l~~c~~Leri~l~~~q~vtk~~i~~ 446 (483)
T KOG4341|consen 379 LSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITD------------ATLEHLSICRNLERIELIDCQDVTKEAISR 446 (483)
T ss_pred hhhhhhhhhhhhhhhhhccccccccceeeecCCCCchH------------HHHHHHhhCcccceeeeechhhhhhhhhHH
Confidence 998753 3331111 1226888999999865532 1223577899999999999853 33333 3
Q ss_pred hhhhccCCCEEEc
Q 040206 289 WLDVLLQLQVLIL 301 (347)
Q Consensus 289 ~~~~l~~L~~l~L 301 (347)
...++|+++...+
T Consensus 447 ~~~~lp~i~v~a~ 459 (483)
T KOG4341|consen 447 FATHLPNIKVHAY 459 (483)
T ss_pred HHhhCccceehhh
Confidence 3456787766544
No 60
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.90 E-value=7.9e-06 Score=77.28 Aligned_cols=59 Identities=22% Similarity=0.156 Sum_probs=25.6
Q ss_pred cCCCccEEeccCCcccccCChhhhhcCCCcccEEEcCCCcCCCCCC-CCCCCCcEEEccCC
Q 040206 21 TQHQLEWLDLSKNQIRGRIPSWMWDIGVHTLQFLILSQNVLTSIDH-LPWKNLQYLTLDSN 80 (347)
Q Consensus 21 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~-~~~~~L~~L~l~~~ 80 (347)
-+|.|++|.+++-.+..+--..+.. .+|+|+.||+++++++++.. ..+++|+.|.+.+-
T Consensus 146 ~LPsL~sL~i~~~~~~~~dF~~lc~-sFpNL~sLDIS~TnI~nl~GIS~LknLq~L~mrnL 205 (699)
T KOG3665|consen 146 MLPSLRSLVISGRQFDNDDFSQLCA-SFPNLRSLDISGTNISNLSGISRLKNLQVLSMRNL 205 (699)
T ss_pred hCcccceEEecCceecchhHHHHhh-ccCccceeecCCCCccCcHHHhccccHHHHhccCC
Confidence 3455555555544433221111222 33555555555555554433 44445554444433
No 61
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.83 E-value=4.1e-07 Score=65.80 Aligned_cols=117 Identities=16% Similarity=0.129 Sum_probs=49.2
Q ss_pred CCcEEEccCCcccCCCCccccCCCCCCeEEecCCccccCcCccccccCCcEEEcccCcccccCChhhhccccccCCCcCc
Q 040206 187 NLQFLDVGNNNLSGPIPECLGNSTRLSFLDVGNNSLSGPIPECLANSTLEILDMRMNKFSGSLPQNICKKLCFGPLPPSL 266 (347)
Q Consensus 187 ~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~l~~~~ 266 (347)
.|+..++++|.+....+......+.++.+++.+|.+.+...+.-..+.|+.++++.|.+. ..|..+
T Consensus 54 el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~lNl~~N~l~--------------~~p~vi 119 (177)
T KOG4579|consen 54 ELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISDVPEELAAMPALRSLNLRFNPLN--------------AEPRVI 119 (177)
T ss_pred eEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhhcccccCccc--------------cchHHH
Confidence 344444444444422222222333444444444444433333222244444444444444 223233
Q ss_pred cCCCCCcEEEccCCccCCccchhhhhccCCCEEEcccceeecccCCccccce
Q 040206 267 VNCQYLEVLDVGNNQIDDTFLYWLDVLLQLQVLILRSNRFWGPIGKLRSRWS 318 (347)
Q Consensus 267 ~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~l~L~~n~~~~~~~~~~~~~~ 318 (347)
..+.++-.|+..+|.+..+..+.+.. ...-.+++.++++.+..+..+..|.
T Consensus 120 ~~L~~l~~Lds~~na~~eid~dl~~s-~~~al~~lgnepl~~~~~~klqa~k 170 (177)
T KOG4579|consen 120 APLIKLDMLDSPENARAEIDVDLFYS-SLPALIKLGNEPLGDETKKKLQALK 170 (177)
T ss_pred HHHHhHHHhcCCCCccccCcHHHhcc-ccHHHHHhcCCcccccCcccccccC
Confidence 33445555565555554333332111 1112234456666666665555443
No 62
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.73 E-value=9.9e-06 Score=76.64 Aligned_cols=159 Identities=19% Similarity=0.210 Sum_probs=99.6
Q ss_pred ccccEEECCCCccccccC--ccCCCCCCccEEEccCCcccC-CCccccccCCCCcEEEccCCcccCCCCccccCCCCCCe
Q 040206 138 STLETLDLGMNNFQGSIP--QTNAKGCNLTSLRLSGNHLEG-PLPPSLINCVNLQFLDVGNNNLSGPIPECLGNSTRLSF 214 (347)
Q Consensus 138 ~~L~~L~l~~~~~~~~~~--~~~~~~~~L~~L~l~~~~~~~-~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~ 214 (347)
.+|++|++++...-...+ ..-.-+|.|++|.+.+-.+.. .......++++|..||+|++++... ..++.+++|+.
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS~LknLq~ 199 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL--SGISRLKNLQV 199 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc--HHHhccccHHH
Confidence 367777777754321111 122345788888887765532 2233445778899999999888743 67788888888
Q ss_pred EEecCCcccc--CcCccccccCCcEEEcccCcccccCChhhhccccccCCCcCccCCCCCcEEEccCCccCCccch-hhh
Q 040206 215 LDVGNNSLSG--PIPECLANSTLEILDMRMNKFSGSLPQNICKKLCFGPLPPSLVNCQYLEVLDVGNNQIDDTFLY-WLD 291 (347)
Q Consensus 215 L~l~~~~~~~--~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~i~~~~~~-~~~ 291 (347)
|.+.+-.+.. .....+...+|+.||+|.......- ..+.++..+ -..+|.|+.||.+++.+++...+ .+.
T Consensus 200 L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~-~ii~qYlec------~~~LpeLrfLDcSgTdi~~~~le~ll~ 272 (699)
T KOG3665|consen 200 LSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDT-KIIEQYLEC------GMVLPELRFLDCSGTDINEEILEELLN 272 (699)
T ss_pred HhccCCCCCchhhHHHHhcccCCCeeeccccccccch-HHHHHHHHh------cccCccccEEecCCcchhHHHHHHHHH
Confidence 8888766653 3335566688899998877555321 222221111 12367899999999988764443 345
Q ss_pred hccCCCEEEcccce
Q 040206 292 VLLQLQVLILRSNR 305 (347)
Q Consensus 292 ~l~~L~~l~L~~n~ 305 (347)
..|+|+.+-+-++.
T Consensus 273 sH~~L~~i~~~~~~ 286 (699)
T KOG3665|consen 273 SHPNLQQIAALDCL 286 (699)
T ss_pred hCccHhhhhhhhhh
Confidence 56777777655433
No 63
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.18 E-value=0.0001 Score=59.62 Aligned_cols=109 Identities=20% Similarity=0.142 Sum_probs=57.3
Q ss_pred CChhhhcCCCccEEeccCCcccccCChhhhhcCCCcccEEEcCCCcCCCCCC-----CCCCCCcEEEccCCCCCcc----
Q 040206 15 FPDILRTQHQLEWLDLSKNQIRGRIPSWMWDIGVHTLQFLILSQNVLTSIDH-----LPWKNLQYLTLDSNLLQGS---- 85 (347)
Q Consensus 15 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~-----~~~~~L~~L~l~~~~~~~~---- 85 (347)
+.........|+.+++.++.++ .+... . .+++|++|.++.|.+..... ..+++|+++++++|++...
T Consensus 35 ~~gl~d~~~~le~ls~~n~glt-t~~~~-P--~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~ 110 (260)
T KOG2739|consen 35 LGGLTDEFVELELLSVINVGLT-TLTNF-P--KLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLR 110 (260)
T ss_pred cccccccccchhhhhhhcccee-ecccC-C--CcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccc
Confidence 3333444555566666555554 22111 1 23667777777763322211 3447777777777766521
Q ss_pred CCCCCCCccEEEcccCcccccC---CccccCCCCccEEEcccCcc
Q 040206 86 LPDLPPHMVQLLISNNSLTGEI---PSSFCNLSSIQYLNLSNNSL 127 (347)
Q Consensus 86 ~~~~~~~L~~L~l~~~~~~~~~---~~~~~~l~~L~~L~l~~~~~ 127 (347)
+...+.+|..|++.+|..+... -..|.-+++|.+|+-....-
T Consensus 111 pl~~l~nL~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~~dv~~ 155 (260)
T KOG2739|consen 111 PLKELENLKSLDLFNCSVTNLDDYREKVFLLLPSLKYLDGCDVDG 155 (260)
T ss_pred hhhhhcchhhhhcccCCccccccHHHHHHHHhhhhccccccccCC
Confidence 1111356677777777655321 12345577888887655443
No 64
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=97.11 E-value=0.0026 Score=47.03 Aligned_cols=86 Identities=22% Similarity=0.341 Sum_probs=30.9
Q ss_pred cCCccccCCCCccEEEcccCcccccCCcccCC-ccccEEECCCCccccccCccCCCCCCccEEEccCCcccCCCcccccc
Q 040206 106 EIPSSFCNLSSIQYLNLSNNSLSGQIPQCLGN-STLETLDLGMNNFQGSIPQTNAKGCNLTSLRLSGNHLEGPLPPSLIN 184 (347)
Q Consensus 106 ~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~-~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~ 184 (347)
+....|.++.+|+.+.+.++ +.......+.. .+++.+.+.. .+.......+..+++++.+.+..+ +.......+..
T Consensus 26 I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l~~i~~~~~-~~~i~~~~f~~ 102 (129)
T PF13306_consen 26 IGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNLKNIDIPSN-ITEIGSSSFSN 102 (129)
T ss_dssp E-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTECEEEETTT--BEEHTTTTTT
T ss_pred eChhhccccccccccccccc-ccccceeeeecccccccccccc-cccccccccccccccccccccCcc-ccEEchhhhcC
Confidence 33444555555555555443 33333333322 2455555543 222233334444555555555432 22222233444
Q ss_pred CCCCcEEEccC
Q 040206 185 CVNLQFLDVGN 195 (347)
Q Consensus 185 ~~~L~~L~l~~ 195 (347)
+ +++.+.+..
T Consensus 103 ~-~l~~i~~~~ 112 (129)
T PF13306_consen 103 C-NLKEINIPS 112 (129)
T ss_dssp --T--EEE-TT
T ss_pred C-CceEEEECC
Confidence 3 555555443
No 65
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=97.00 E-value=0.0034 Score=46.38 Aligned_cols=59 Identities=19% Similarity=0.244 Sum_probs=21.0
Q ss_pred CCCCCCccEEEccCCcccCCCccccccCCCCcEEEccCCcccCCCCccccCCCCCCeEEec
Q 040206 158 NAKGCNLTSLRLSGNHLEGPLPPSLINCVNLQFLDVGNNNLSGPIPECLGNSTRLSFLDVG 218 (347)
Q Consensus 158 ~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~ 218 (347)
|..+.+|+.+.+.. .+.......|..+++++.+.+..+ +......++..+++++.+.+.
T Consensus 8 F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~ 66 (129)
T PF13306_consen 8 FYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFP 66 (129)
T ss_dssp TTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEET
T ss_pred HhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeeccccccccccc
Confidence 33344455544442 222233334444545555555443 332333344444455555554
No 66
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.94 E-value=0.00058 Score=55.41 Aligned_cols=103 Identities=23% Similarity=0.238 Sum_probs=57.1
Q ss_pred CCCCcEEEccCCcccCCCCccccCCCCCCeEEecCC--ccccCcCc-cccccCCcEEEcccCcccccCChhhhccccccC
Q 040206 185 CVNLQFLDVGNNNLSGPIPECLGNSTRLSFLDVGNN--SLSGPIPE-CLANSTLEILDMRMNKFSGSLPQNICKKLCFGP 261 (347)
Q Consensus 185 ~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~~--~~~~~~~~-~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~ 261 (347)
+..|+.+++.+..++. ...+..+++|+.|.++.| .+...... ....++|+++.+++|++.. +. .
T Consensus 42 ~~~le~ls~~n~gltt--~~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~--ls---------t 108 (260)
T KOG2739|consen 42 FVELELLSVINVGLTT--LTNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKD--LS---------T 108 (260)
T ss_pred ccchhhhhhhccceee--cccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCcccc--cc---------c
Confidence 3455556665555542 134556777888888877 33322221 1222778888888887763 11 1
Q ss_pred CCcCccCCCCCcEEEccCCccCC---ccchhhhhccCCCEEEc
Q 040206 262 LPPSLVNCQYLEVLDVGNNQIDD---TFLYWLDVLLQLQVLIL 301 (347)
Q Consensus 262 l~~~~~~~~~L~~L~L~~n~i~~---~~~~~~~~l~~L~~l~L 301 (347)
++ .+..+++|..|++.+|..+. .-...|.-+++|+.+|-
T Consensus 109 l~-pl~~l~nL~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~ 150 (260)
T KOG2739|consen 109 LR-PLKELENLKSLDLFNCSVTNLDDYREKVFLLLPSLKYLDG 150 (260)
T ss_pred cc-hhhhhcchhhhhcccCCccccccHHHHHHHHhhhhccccc
Confidence 11 23456667777777776543 22234555666666553
No 67
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.86 E-value=6.9e-05 Score=61.17 Aligned_cols=76 Identities=28% Similarity=0.316 Sum_probs=52.0
Q ss_pred eEEEecCCCCCCCChhhhcCCCccEEeccCCcccccCChhhhhcCCCcccEEEcCCCcCCCCCC----CCCCCCcEEEcc
Q 040206 3 IKTQVKTCNISEFPDILRTQHQLEWLDLSKNQIRGRIPSWMWDIGVHTLQFLILSQNVLTSIDH----LPWKNLQYLTLD 78 (347)
Q Consensus 3 ~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~----~~~~~L~~L~l~ 78 (347)
+.|++=||.+..+. .+.+|+.|+.|.|+=|+|+ .+.+.- .|.+|++|+|+.|.|.++.. .++++|+.|.|.
T Consensus 22 kKLNcwg~~L~DIs-ic~kMp~lEVLsLSvNkIs-sL~pl~---rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL~ 96 (388)
T KOG2123|consen 22 KKLNCWGCGLDDIS-ICEKMPLLEVLSLSVNKIS-SLAPLQ---RCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWLD 96 (388)
T ss_pred hhhcccCCCccHHH-HHHhcccceeEEeeccccc-cchhHH---HHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhhc
Confidence 45666677776554 3667888888888877777 333222 56778888888887777665 566777777777
Q ss_pred CCCCC
Q 040206 79 SNLLQ 83 (347)
Q Consensus 79 ~~~~~ 83 (347)
.|+..
T Consensus 97 ENPCc 101 (388)
T KOG2123|consen 97 ENPCC 101 (388)
T ss_pred cCCcc
Confidence 77654
No 68
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.66 E-value=6.6e-05 Score=61.31 Aligned_cols=86 Identities=29% Similarity=0.373 Sum_probs=56.3
Q ss_pred CCCeEEecCCccccCcCccccccCCcEEEcccCcccccCChhhhccccccCCCcCccCCCCCcEEEccCCccCCccc-hh
Q 040206 211 RLSFLDVGNNSLSGPIPECLANSTLEILDMRMNKFSGSLPQNICKKLCFGPLPPSLVNCQYLEVLDVGNNQIDDTFL-YW 289 (347)
Q Consensus 211 ~L~~L~l~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~i~~~~~-~~ 289 (347)
+.+.|+..+|.+. ++.-....+.|+.|.|+-|+|+. + ..+..|.+|++|+|..|.|.+.-. ..
T Consensus 20 ~vkKLNcwg~~L~-DIsic~kMp~lEVLsLSvNkIss--------------L-~pl~rCtrLkElYLRkN~I~sldEL~Y 83 (388)
T KOG2123|consen 20 NVKKLNCWGCGLD-DISICEKMPLLEVLSLSVNKISS--------------L-APLQRCTRLKELYLRKNCIESLDELEY 83 (388)
T ss_pred HhhhhcccCCCcc-HHHHHHhcccceeEEeecccccc--------------c-hhHHHHHHHHHHHHHhcccccHHHHHH
Confidence 4455566666554 22222333566777777777663 1 236678888888888888875332 45
Q ss_pred hhhccCCCEEEcccceeecccCC
Q 040206 290 LDVLLQLQVLILRSNRFWGPIGK 312 (347)
Q Consensus 290 ~~~l~~L~~l~L~~n~~~~~~~~ 312 (347)
+.++|+|+.|.|..||-.+..+.
T Consensus 84 LknlpsLr~LWL~ENPCc~~ag~ 106 (388)
T KOG2123|consen 84 LKNLPSLRTLWLDENPCCGEAGQ 106 (388)
T ss_pred HhcCchhhhHhhccCCcccccch
Confidence 67888888888888888776553
No 69
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=96.37 E-value=0.00025 Score=65.41 Aligned_cols=233 Identities=23% Similarity=0.155 Sum_probs=123.0
Q ss_pred hhcCCCccEEeccCC-cccccCChhhhhcCCCcccEEEcCCC--cCCCCC------CCCCCCCcEEEccCCC-CCcc---
Q 040206 19 LRTQHQLEWLDLSKN-QIRGRIPSWMWDIGVHTLQFLILSQN--VLTSID------HLPWKNLQYLTLDSNL-LQGS--- 85 (347)
Q Consensus 19 ~~~~~~L~~L~l~~~-~~~~~~~~~~~~~~~~~L~~L~l~~~--~l~~~~------~~~~~~L~~L~l~~~~-~~~~--- 85 (347)
...++.|+.+.+..+ .++...-..+.. .++.|+.|+++++ .....+ ...+.+|+.++++.+. ++..
T Consensus 184 ~~~~~~L~~l~l~~~~~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~ 262 (482)
T KOG1947|consen 184 LSSCPLLKRLSLSGCSKITDDSLDALAL-KCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLS 262 (482)
T ss_pred HhhCchhhHhhhcccccCChhhHHHHHh-hCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHH
Confidence 345788888888888 444222122222 5688999998873 111111 1445788888888887 4432
Q ss_pred -CCCCCCCccEEEcccCc-cccc-CCccccCCCCccEEEcccCccccc---CCcccCCccccEEECCCCccccccCccCC
Q 040206 86 -LPDLPPHMVQLLISNNS-LTGE-IPSSFCNLSSIQYLNLSNNSLSGQ---IPQCLGNSTLETLDLGMNNFQGSIPQTNA 159 (347)
Q Consensus 86 -~~~~~~~L~~L~l~~~~-~~~~-~~~~~~~l~~L~~L~l~~~~~~~~---~~~~~~~~~L~~L~l~~~~~~~~~~~~~~ 159 (347)
....+++|+.|.+.++. +++. +......++.|++|+++.+..... ......+++++.+.+....
T Consensus 263 ~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~~~~~---------- 332 (482)
T KOG1947|consen 263 ALASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKLLSLN---------- 332 (482)
T ss_pred HHHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhhhhhcC----------
Confidence 22335788998877776 4432 223344678899999987755310 0011123344443332221
Q ss_pred CCCCccEEEccCCccc---CCCccccccCCCCcEEEccCCcccCCC-CccccCCCCCCeEEecCCccccCcCccccccCC
Q 040206 160 KGCNLTSLRLSGNHLE---GPLPPSLINCVNLQFLDVGNNNLSGPI-PECLGNSTRLSFLDVGNNSLSGPIPECLANSTL 235 (347)
Q Consensus 160 ~~~~L~~L~l~~~~~~---~~~~~~l~~~~~L~~L~l~~n~~~~~~-~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~L 235 (347)
.++.++.+.+.++... .........+++++.+.+..+...... ...+..++.|. ..+..+.. ...++
T Consensus 333 ~c~~l~~~~l~~~~~~~~d~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~l~gc~~l~-~~l~~~~~--------~~~~l 403 (482)
T KOG1947|consen 333 GCPSLTDLSLSGLLTLTSDDLAELILRSCPKLTDLSLSYCGISDLGLELSLRGCPNLT-ESLELRLC--------RSDSL 403 (482)
T ss_pred CCccHHHHHHHHhhccCchhHhHHHHhcCCCcchhhhhhhhccCcchHHHhcCCcccc-hHHHHHhc--------cCCcc
Confidence 1344555555443321 122334567788888888877643222 23344555552 22111100 01126
Q ss_pred cEEEcccCcccccCChhhhccccccCCCcCccC-CCCCcEEEccCCccC
Q 040206 236 EILDMRMNKFSGSLPQNICKKLCFGPLPPSLVN-CQYLEVLDVGNNQID 283 (347)
Q Consensus 236 ~~L~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~L~~L~L~~n~i~ 283 (347)
+.|+++.+.....- .+. .... +..++.+++.++...
T Consensus 404 ~~L~l~~~~~~t~~-----------~l~-~~~~~~~~~~~l~~~~~~~~ 440 (482)
T KOG1947|consen 404 RVLNLSDCRLVTDK-----------GLR-CLADSCSNLKDLDLSGCRVI 440 (482)
T ss_pred ceEecccCcccccc-----------chH-HHhhhhhccccCCccCcccc
Confidence 77888777543210 010 1111 667788888887654
No 70
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.79 E-value=0.0028 Score=30.59 Aligned_cols=18 Identities=56% Similarity=0.807 Sum_probs=10.4
Q ss_pred CccEEeccCCcccccCChh
Q 040206 24 QLEWLDLSKNQIRGRIPSW 42 (347)
Q Consensus 24 ~L~~L~l~~~~~~~~~~~~ 42 (347)
+|++|++++|.++ .+|+.
T Consensus 1 ~L~~Ldls~n~l~-~ip~~ 18 (22)
T PF00560_consen 1 NLEYLDLSGNNLT-SIPSS 18 (22)
T ss_dssp TESEEEETSSEES-EEGTT
T ss_pred CccEEECCCCcCE-eCChh
Confidence 3566666666665 55544
No 71
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.32 E-value=0.0098 Score=28.64 Aligned_cols=17 Identities=29% Similarity=0.245 Sum_probs=8.6
Q ss_pred CCEEEcccceeecccCCc
Q 040206 296 LQVLILRSNRFWGPIGKL 313 (347)
Q Consensus 296 L~~l~L~~n~~~~~~~~~ 313 (347)
|++||+++|.++ .+|..
T Consensus 2 L~~Ldls~n~l~-~ip~~ 18 (22)
T PF00560_consen 2 LEYLDLSGNNLT-SIPSS 18 (22)
T ss_dssp ESEEEETSSEES-EEGTT
T ss_pred ccEEECCCCcCE-eCChh
Confidence 455555555555 34443
No 72
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=95.03 E-value=4.9e-05 Score=68.91 Aligned_cols=188 Identities=25% Similarity=0.288 Sum_probs=87.9
Q ss_pred ccEEEcccCccccc----CCccccCCCCccEEEcccCcccccCCcccCCccccEEECCCCccccccCccCCCC-CCccEE
Q 040206 93 MVQLLISNNSLTGE----IPSSFCNLSSIQYLNLSNNSLSGQIPQCLGNSTLETLDLGMNNFQGSIPQTNAKG-CNLTSL 167 (347)
Q Consensus 93 L~~L~l~~~~~~~~----~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~-~~L~~L 167 (347)
+..+.+.+|.+... +...+...+.|+.|++++|.+........ -..+... +.+++|
T Consensus 89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l-------------------~~~l~~~~~~l~~L 149 (478)
T KOG4308|consen 89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLL-------------------CEGLRLPQCLLQTL 149 (478)
T ss_pred HHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHH-------------------HhhcccchHHHHHH
Confidence 56666666666532 22334455666666666666552111100 0011111 233334
Q ss_pred EccCCcccCC----CccccccCCCCcEEEccCCcccC----CCCccc----cCCCCCCeEEecCCccccCcCccccc---
Q 040206 168 RLSGNHLEGP----LPPSLINCVNLQFLDVGNNNLSG----PIPECL----GNSTRLSFLDVGNNSLSGPIPECLAN--- 232 (347)
Q Consensus 168 ~l~~~~~~~~----~~~~l~~~~~L~~L~l~~n~~~~----~~~~~l----~~~~~L~~L~l~~~~~~~~~~~~~~~--- 232 (347)
.+..|.++.. ....+.....++.++++.|.+.. ..+.++ ....++++|.+.+|.++.........
T Consensus 150 ~l~~c~l~~~g~~~l~~~L~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~ 229 (478)
T KOG4308|consen 150 ELVSCSLTSEGAAPLAAVLEKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLA 229 (478)
T ss_pred HhhcccccccchHHHHHHHhcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHh
Confidence 4444444322 22233334555555555554421 111222 23556666666666655332221111
Q ss_pred --cC-CcEEEcccCcccccCChhhhccccccCCCcCccCC-CCCcEEEccCCccCCccc----hhhhhccCCCEEEcccc
Q 040206 233 --ST-LEILDMRMNKFSGSLPQNICKKLCFGPLPPSLVNC-QYLEVLDVGNNQIDDTFL----YWLDVLLQLQVLILRSN 304 (347)
Q Consensus 233 --~~-L~~L~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~L~~L~L~~n~i~~~~~----~~~~~l~~L~~l~L~~n 304 (347)
+. +..+++.+|.+.+.+... +...+..+ +.++++++..|.|++... ..+..++.++.+.++.|
T Consensus 230 ~~~~~~~el~l~~n~l~d~g~~~---------L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n 300 (478)
T KOG4308|consen 230 SGESLLRELDLASNKLGDVGVEK---------LLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNN 300 (478)
T ss_pred ccchhhHHHHHHhcCcchHHHHH---------HHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccC
Confidence 22 455666666666543332 22233333 456667777776654332 23344566667777766
Q ss_pred eeec
Q 040206 305 RFWG 308 (347)
Q Consensus 305 ~~~~ 308 (347)
++..
T Consensus 301 ~l~~ 304 (478)
T KOG4308|consen 301 PLTD 304 (478)
T ss_pred cccc
Confidence 6654
No 73
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=94.35 E-value=0.0067 Score=55.92 Aligned_cols=17 Identities=24% Similarity=0.302 Sum_probs=8.3
Q ss_pred ccCCCCCcEEEccCCcc
Q 040206 266 LVNCQYLEVLDVGNNQI 282 (347)
Q Consensus 266 ~~~~~~L~~L~L~~n~i 282 (347)
...|+.|++|++++|..
T Consensus 291 ~~~~~~L~~L~l~~c~~ 307 (482)
T KOG1947|consen 291 AERCPSLRELDLSGCHG 307 (482)
T ss_pred HHhcCcccEEeeecCcc
Confidence 33455555555555543
No 74
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=94.02 E-value=9.2e-05 Score=67.16 Aligned_cols=192 Identities=24% Similarity=0.193 Sum_probs=96.3
Q ss_pred ccEEeccCCcccccCChhhhhc--CCCcccEEEcCCCcCCCCCCC----CC----CCCcEEEccCCCCCccCCCCCCCcc
Q 040206 25 LEWLDLSKNQIRGRIPSWMWDI--GVHTLQFLILSQNVLTSIDHL----PW----KNLQYLTLDSNLLQGSLPDLPPHMV 94 (347)
Q Consensus 25 L~~L~l~~~~~~~~~~~~~~~~--~~~~L~~L~l~~~~l~~~~~~----~~----~~L~~L~l~~~~~~~~~~~~~~~L~ 94 (347)
+..+.+.+|.+.+.....+... ..++|..|++++|.+.+.+.. .+ ..+++|.+..|.++.....
T Consensus 89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~------ 162 (478)
T KOG4308|consen 89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAA------ 162 (478)
T ss_pred HHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchH------
Confidence 7778888888876554444331 346777788887777643331 11 2234444444443321111
Q ss_pred EEEcccCcccccCCccccCCCCccEEEcccCcccccCCcccCCccccEEECCCCccccccCccCCCCCCccEEEccCCcc
Q 040206 95 QLLISNNSLTGEIPSSFCNLSSIQYLNLSNNSLSGQIPQCLGNSTLETLDLGMNNFQGSIPQTNAKGCNLTSLRLSGNHL 174 (347)
Q Consensus 95 ~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 174 (347)
.....+.....++.++++.|.+....... +....+..+....+++++.+.+|.+
T Consensus 163 -----------~l~~~L~~~~~l~~l~l~~n~l~~~g~~~---------------l~~~l~~~~~~~~~le~L~L~~~~~ 216 (478)
T KOG4308|consen 163 -----------PLAAVLEKNEHLTELDLSLNGLIELGLLV---------------LSQALESAASPLSSLETLKLSRCGV 216 (478)
T ss_pred -----------HHHHHHhcccchhHHHHHhcccchhhhHH---------------HhhhhhhhhcccccHHHHhhhhcCc
Confidence 12233334455666666655543100000 0001111233445666667766665
Q ss_pred cCCC----ccccccCCC-CcEEEccCCcccCC----CCccccCC-CCCCeEEecCCccccCcCccccc-----cCCcEEE
Q 040206 175 EGPL----PPSLINCVN-LQFLDVGNNNLSGP----IPECLGNS-TRLSFLDVGNNSLSGPIPECLAN-----STLEILD 239 (347)
Q Consensus 175 ~~~~----~~~l~~~~~-L~~L~l~~n~~~~~----~~~~l~~~-~~L~~L~l~~~~~~~~~~~~~~~-----~~L~~L~ 239 (347)
+... ...+...+. +..+++..|.+.+. ....+..+ ..+++++++.|.+++........ +.++.+.
T Consensus 217 t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~ 296 (478)
T KOG4308|consen 217 TSSSCALLDEVLASGESLLRELDLASNKLGDVGVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELS 296 (478)
T ss_pred ChHHHHHHHHHHhccchhhHHHHHHhcCcchHHHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhh
Confidence 5221 122334444 56677877776533 12233344 56677777777776544433222 4667777
Q ss_pred cccCccccc
Q 040206 240 MRMNKFSGS 248 (347)
Q Consensus 240 L~~~~~~~~ 248 (347)
+.+|.+.+.
T Consensus 297 l~~n~l~~~ 305 (478)
T KOG4308|consen 297 LSNNPLTDY 305 (478)
T ss_pred cccCccccH
Confidence 777766653
No 75
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=93.57 E-value=0.051 Score=24.20 Aligned_cols=13 Identities=46% Similarity=0.647 Sum_probs=4.9
Q ss_pred CccEEeccCCccc
Q 040206 24 QLEWLDLSKNQIR 36 (347)
Q Consensus 24 ~L~~L~l~~~~~~ 36 (347)
+|+.|++++|+++
T Consensus 2 ~L~~L~l~~n~L~ 14 (17)
T PF13504_consen 2 NLRTLDLSNNRLT 14 (17)
T ss_dssp T-SEEEETSS--S
T ss_pred ccCEEECCCCCCC
Confidence 4455555555443
No 76
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=93.31 E-value=0.031 Score=27.45 Aligned_cols=22 Identities=45% Similarity=0.427 Sum_probs=13.5
Q ss_pred CCCccEEeccCCcccccCChhh
Q 040206 22 QHQLEWLDLSKNQIRGRIPSWM 43 (347)
Q Consensus 22 ~~~L~~L~l~~~~~~~~~~~~~ 43 (347)
+++|++|++++|++++..+..+
T Consensus 1 ~~~L~~L~l~~n~i~~~g~~~l 22 (24)
T PF13516_consen 1 NPNLETLDLSNNQITDEGASAL 22 (24)
T ss_dssp -TT-SEEE-TSSBEHHHHHHHH
T ss_pred CCCCCEEEccCCcCCHHHHHHh
Confidence 4678888888888876555444
No 77
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=93.07 E-value=0.036 Score=27.25 Aligned_cols=15 Identities=60% Similarity=0.798 Sum_probs=6.5
Q ss_pred CCCcEEEccCCccCC
Q 040206 270 QYLEVLDVGNNQIDD 284 (347)
Q Consensus 270 ~~L~~L~L~~n~i~~ 284 (347)
++|++|+|++|.|++
T Consensus 2 ~~L~~L~l~~n~i~~ 16 (24)
T PF13516_consen 2 PNLETLDLSNNQITD 16 (24)
T ss_dssp TT-SEEE-TSSBEHH
T ss_pred CCCCEEEccCCcCCH
Confidence 345555555555544
No 78
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.85 E-value=0.014 Score=45.74 Aligned_cols=38 Identities=29% Similarity=0.225 Sum_probs=22.4
Q ss_pred CCCCcEEEccCC-ccCCccchhhhhccCCCEEEccccee
Q 040206 269 CQYLEVLDVGNN-QIDDTFLYWLDVLLQLQVLILRSNRF 306 (347)
Q Consensus 269 ~~~L~~L~L~~n-~i~~~~~~~~~~l~~L~~l~L~~n~~ 306 (347)
.++|+.|++++| +|++.....+..+++|+.|.+.+=+.
T Consensus 150 ~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~l~~l~~ 188 (221)
T KOG3864|consen 150 APSLQDLDLSGCPRITDGGLACLLKLKNLRRLHLYDLPY 188 (221)
T ss_pred ccchheeeccCCCeechhHHHHHHHhhhhHHHHhcCchh
Confidence 455666666666 45555555566666666666654443
No 79
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.63 E-value=0.018 Score=45.19 Aligned_cols=81 Identities=17% Similarity=0.055 Sum_probs=42.2
Q ss_pred cccEEECCCCccccccCccCCCCCCccEEEccCCccc-CCCccccc-cCCCCcEEEccCC-cccCCCCccccCCCCCCeE
Q 040206 139 TLETLDLGMNNFQGSIPQTNAKGCNLTSLRLSGNHLE-GPLPPSLI-NCVNLQFLDVGNN-NLSGPIPECLGNSTRLSFL 215 (347)
Q Consensus 139 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~-~~~~~~l~-~~~~L~~L~l~~n-~~~~~~~~~l~~~~~L~~L 215 (347)
.++.++.+++.+....-+.+..++.++.+.+..|.-- +.....++ ..++|+.|++++| +|++.....+..+++|+.|
T Consensus 102 ~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L 181 (221)
T KOG3864|consen 102 KIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRL 181 (221)
T ss_pred eEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHH
Confidence 3555666666555444455555666666666665421 11111111 2356666666666 4444444455566666666
Q ss_pred EecC
Q 040206 216 DVGN 219 (347)
Q Consensus 216 ~l~~ 219 (347)
.+.+
T Consensus 182 ~l~~ 185 (221)
T KOG3864|consen 182 HLYD 185 (221)
T ss_pred HhcC
Confidence 6554
No 80
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=91.42 E-value=0.19 Score=25.11 Aligned_cols=21 Identities=29% Similarity=0.207 Sum_probs=12.8
Q ss_pred CCCcEEEccCCccCCccchhh
Q 040206 270 QYLEVLDVGNNQIDDTFLYWL 290 (347)
Q Consensus 270 ~~L~~L~L~~n~i~~~~~~~~ 290 (347)
++|++|+|++|.+...+...|
T Consensus 2 ~~L~~L~L~~N~l~~lp~~~f 22 (26)
T smart00370 2 PNLRELDLSNNQLSSLPPGAF 22 (26)
T ss_pred CCCCEEECCCCcCCcCCHHHc
Confidence 456777777777765544443
No 81
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=91.42 E-value=0.19 Score=25.11 Aligned_cols=21 Identities=29% Similarity=0.207 Sum_probs=12.8
Q ss_pred CCCcEEEccCCccCCccchhh
Q 040206 270 QYLEVLDVGNNQIDDTFLYWL 290 (347)
Q Consensus 270 ~~L~~L~L~~n~i~~~~~~~~ 290 (347)
++|++|+|++|.+...+...|
T Consensus 2 ~~L~~L~L~~N~l~~lp~~~f 22 (26)
T smart00369 2 PNLRELDLSNNQLSSLPPGAF 22 (26)
T ss_pred CCCCEEECCCCcCCcCCHHHc
Confidence 456777777777765544443
No 82
>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]
Probab=88.63 E-value=1.4 Score=39.61 Aligned_cols=114 Identities=21% Similarity=0.102 Sum_probs=62.0
Q ss_pred CCcEEEccCCcccCCCCc--cccCCCCCCeEEecCCccccC-cCcccc---------ccCCcEEEcccCcccccCChhhh
Q 040206 187 NLQFLDVGNNNLSGPIPE--CLGNSTRLSFLDVGNNSLSGP-IPECLA---------NSTLEILDMRMNKFSGSLPQNIC 254 (347)
Q Consensus 187 ~L~~L~l~~n~~~~~~~~--~l~~~~~L~~L~l~~~~~~~~-~~~~~~---------~~~L~~L~L~~~~~~~~~~~~~~ 254 (347)
.++.+.+..|+..+.... .+..-++.+.+.+.......+ ...... ..-+..+.++.+........
T Consensus 355 R~q~l~~rdnnldgeg~~vgk~~~s~s~r~l~agrs~~kqvm~s~~~a~~v~k~~~~~g~l~el~ls~~~lka~l~s--- 431 (553)
T KOG4242|consen 355 RVQVLLQRDNNLDGEGGAVGKRKQSKSGRILKAGRSGDKQVMDSSTEAPPVSKKSRTHGVLAELSLSPGPLKAGLES--- 431 (553)
T ss_pred eeeEeeccccccccccccccceeeccccccccccccCCceeccccccchhhhhhhcccccccCcccCCCcccccHHH---
Confidence 478888888877654332 334455677777654332110 000000 02455666666665532211
Q ss_pred ccccccCCCcCccCCCCCcEEEccCCccCCcc----chhhhhccCCCEEEcccceeeccc
Q 040206 255 KKLCFGPLPPSLVNCQYLEVLDVGNNQIDDTF----LYWLDVLLQLQVLILRSNRFWGPI 310 (347)
Q Consensus 255 ~~~~~~~l~~~~~~~~~L~~L~L~~n~i~~~~----~~~~~~l~~L~~l~L~~n~~~~~~ 310 (347)
.......-+.+.++++++|...+.. ++....-.+++.+..+.|......
T Consensus 432 -------~in~l~stqtl~kldisgn~mgd~gap~lpkalq~n~rlr~ipds~n~p~~~g 484 (553)
T KOG4242|consen 432 -------AINKLLSTQTLAKLDISGNGMGDGGAPPLPKALQSNCRLRPIPDSLNLPEDPG 484 (553)
T ss_pred -------HHHhhccCcccccccccCCCcccCCCCcCccccCCCCccCCCCCCCCCccccc
Confidence 1123445567888999998776522 333444456777777777766543
No 83
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=82.61 E-value=0.93 Score=23.14 Aligned_cols=17 Identities=35% Similarity=0.446 Sum_probs=10.1
Q ss_pred CCCcEEEccCCccCCcc
Q 040206 270 QYLEVLDVGNNQIDDTF 286 (347)
Q Consensus 270 ~~L~~L~L~~n~i~~~~ 286 (347)
++|++|+|++|.+.+..
T Consensus 2 ~~L~~LdL~~N~i~~~G 18 (28)
T smart00368 2 PSLRELDLSNNKLGDEG 18 (28)
T ss_pred CccCEEECCCCCCCHHH
Confidence 34666666666665433
No 84
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=80.75 E-value=1.1 Score=41.05 Aligned_cols=62 Identities=27% Similarity=0.156 Sum_probs=30.0
Q ss_pred cCCCccEEeccCCcccccC-ChhhhhcCCCcccEEEcCCC--cCCCCC---CCCCCCCcEEEccCCCCC
Q 040206 21 TQHQLEWLDLSKNQIRGRI-PSWMWDIGVHTLQFLILSQN--VLTSID---HLPWKNLQYLTLDSNLLQ 83 (347)
Q Consensus 21 ~~~~L~~L~l~~~~~~~~~-~~~~~~~~~~~L~~L~l~~~--~l~~~~---~~~~~~L~~L~l~~~~~~ 83 (347)
+.+.+..+++++|++-..- ...+.. ..|+|.+|+|++| .+.... ..+...|++|.+.+|++.
T Consensus 216 n~p~i~sl~lsnNrL~~Ld~~sslsq-~apklk~L~LS~N~~~~~~~~el~K~k~l~Leel~l~GNPlc 283 (585)
T KOG3763|consen 216 NFPEILSLSLSNNRLYHLDALSSLSQ-IAPKLKTLDLSHNHSKISSESELDKLKGLPLEELVLEGNPLC 283 (585)
T ss_pred CCcceeeeecccchhhchhhhhHHHH-hcchhheeecccchhhhcchhhhhhhcCCCHHHeeecCCccc
Confidence 4555666666666554111 111222 3366666666666 222211 133345666666666654
No 85
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=78.75 E-value=1.3 Score=22.06 Aligned_cols=13 Identities=31% Similarity=0.562 Sum_probs=8.0
Q ss_pred CCCCcEEEccCCc
Q 040206 269 CQYLEVLDVGNNQ 281 (347)
Q Consensus 269 ~~~L~~L~L~~n~ 281 (347)
|++|++|+|++|.
T Consensus 1 c~~L~~L~l~~C~ 13 (26)
T smart00367 1 CPNLRELDLSGCT 13 (26)
T ss_pred CCCCCEeCCCCCC
Confidence 4556666666663
No 86
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=76.27 E-value=2.4 Score=21.28 Aligned_cols=15 Identities=40% Similarity=0.583 Sum_probs=9.1
Q ss_pred CCCcEEEccCCccCC
Q 040206 270 QYLEVLDVGNNQIDD 284 (347)
Q Consensus 270 ~~L~~L~L~~n~i~~ 284 (347)
.+|+.|++++|+|..
T Consensus 2 ~~L~~L~L~~NkI~~ 16 (26)
T smart00365 2 TNLEELDLSQNKIKK 16 (26)
T ss_pred CccCEEECCCCccce
Confidence 356666666666643
No 87
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=74.13 E-value=0.061 Score=43.33 Aligned_cols=22 Identities=9% Similarity=-0.096 Sum_probs=12.3
Q ss_pred CCcCccCCCCCcEEEccCCccC
Q 040206 262 LPPSLVNCQYLEVLDVGNNQID 283 (347)
Q Consensus 262 l~~~~~~~~~L~~L~L~~n~i~ 283 (347)
.|.++++.+.++++++.++.+.
T Consensus 103 ~p~s~~k~~~~k~~e~k~~~~~ 124 (326)
T KOG0473|consen 103 QPKSQKKEPHPKKNEQKKTEFF 124 (326)
T ss_pred CCccccccCCcchhhhccCcch
Confidence 4555555556666655555543
No 88
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=71.92 E-value=0.2 Score=40.46 Aligned_cols=88 Identities=17% Similarity=0.117 Sum_probs=47.5
Q ss_pred CCC-hhhhcCCCccEEeccCCcccccCChhhhhcCCCcccEEEcCCCcCCCCCC--CCCCCCcEEEccCCCCCccCCCC-
Q 040206 14 EFP-DILRTQHQLEWLDLSKNQIRGRIPSWMWDIGVHTLQFLILSQNVLTSIDH--LPWKNLQYLTLDSNLLQGSLPDL- 89 (347)
Q Consensus 14 ~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~--~~~~~L~~L~l~~~~~~~~~~~~- 89 (347)
.+| ..+....+.+.||++.+.+. .+-..+..+ ..+..|+++.+.+...+. .....+..++...|..+..+.+.
T Consensus 32 ~~~v~ei~~~kr~tvld~~s~r~v-n~~~n~s~~--t~~~rl~~sknq~~~~~~d~~q~~e~~~~~~~~n~~~~~p~s~~ 108 (326)
T KOG0473|consen 32 EIPVREIASFKRVTVLDLSSNRLV-NLGKNFSIL--TRLVRLDLSKNQIKFLPKDAKQQRETVNAASHKNNHSQQPKSQK 108 (326)
T ss_pred ccchhhhhccceeeeehhhhhHHH-hhccchHHH--HHHHHHhccHhhHhhChhhHHHHHHHHHHHhhccchhhCCcccc
Confidence 444 24455666777777776665 333333333 566667777666555444 33344555555555554333222
Q ss_pred -CCCccEEEcccCccc
Q 040206 90 -PPHMVQLLISNNSLT 104 (347)
Q Consensus 90 -~~~L~~L~l~~~~~~ 104 (347)
.++++++++.++.+.
T Consensus 109 k~~~~k~~e~k~~~~~ 124 (326)
T KOG0473|consen 109 KEPHPKKNEQKKTEFF 124 (326)
T ss_pred ccCCcchhhhccCcch
Confidence 366667776666544
No 89
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=65.47 E-value=4.2 Score=37.41 Aligned_cols=59 Identities=24% Similarity=0.213 Sum_probs=40.6
Q ss_pred CCCcccEEEcCCCcCCCCCC-----CCCCCCcEEEccCC--CCCcc--CC-CCCCCccEEEcccCcccc
Q 040206 47 GVHTLQFLILSQNVLTSIDH-----LPWKNLQYLTLDSN--LLQGS--LP-DLPPHMVQLLISNNSLTG 105 (347)
Q Consensus 47 ~~~~L~~L~l~~~~l~~~~~-----~~~~~L~~L~l~~~--~~~~~--~~-~~~~~L~~L~l~~~~~~~ 105 (347)
..+.+..+++++|.+..++. ...|+|..|+|++| .+... .. -....|++|.+.||.+..
T Consensus 216 n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~~el~K~k~l~Leel~l~GNPlc~ 284 (585)
T KOG3763|consen 216 NFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISSESELDKLKGLPLEELVLEGNPLCT 284 (585)
T ss_pred CCcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcchhhhhhhcCCCHHHeeecCCcccc
Confidence 55788888899887776665 45688899999888 22211 11 112567888888888773
No 90
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=61.50 E-value=5.8 Score=19.89 Aligned_cols=16 Identities=13% Similarity=0.353 Sum_probs=8.4
Q ss_pred ceEEEecCCCCCCCCh
Q 040206 2 TIKTQVKTCNISEFPD 17 (347)
Q Consensus 2 l~~l~l~~~~~~~~~~ 17 (347)
|+.|+.++|+++.+|+
T Consensus 4 L~~L~vs~N~Lt~LPe 19 (26)
T smart00364 4 LKELNVSNNQLTSLPE 19 (26)
T ss_pred cceeecCCCccccCcc
Confidence 4455555555555554
No 91
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=60.56 E-value=5.6 Score=43.99 Aligned_cols=36 Identities=28% Similarity=0.204 Sum_probs=21.9
Q ss_pred EccCCccCCccchhhhhccCCCEEEcccceeecccC
Q 040206 276 DVGNNQIDDTFLYWLDVLLQLQVLILRSNRFWGPIG 311 (347)
Q Consensus 276 ~L~~n~i~~~~~~~~~~l~~L~~l~L~~n~~~~~~~ 311 (347)
||++|+|.......|..+++|+.|+|++||+..++.
T Consensus 1 DLSnN~LstLp~g~F~~L~sL~~LdLsgNPw~CDC~ 36 (2740)
T TIGR00864 1 DISNNKISTIEEGICANLCNLSEIDLSGNPFECDCG 36 (2740)
T ss_pred CCCCCcCCccChHHhccCCCceEEEeeCCccccccc
Confidence 355666665555566666666666666666665433
No 92
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=23.24 E-value=58 Score=36.86 Aligned_cols=31 Identities=26% Similarity=0.331 Sum_probs=27.6
Q ss_pred EecCCCCCCCCh-hhhcCCCccEEeccCCccc
Q 040206 6 QVKTCNISEFPD-ILRTQHQLEWLDLSKNQIR 36 (347)
Q Consensus 6 ~l~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~ 36 (347)
||++|+|+.+|. .|.++++|+.|+|++|.+.
T Consensus 1 DLSnN~LstLp~g~F~~L~sL~~LdLsgNPw~ 32 (2740)
T TIGR00864 1 DISNNKISTIEEGICANLCNLSEIDLSGNPFE 32 (2740)
T ss_pred CCCCCcCCccChHHhccCCCceEEEeeCCccc
Confidence 588999998885 8899999999999999776
No 93
>PRK09718 hypothetical protein; Validated
Probab=20.96 E-value=1.2e+02 Score=27.91 Aligned_cols=13 Identities=8% Similarity=-0.171 Sum_probs=6.6
Q ss_pred ccccEEECCCCcc
Q 040206 138 STLETLDLGMNNF 150 (347)
Q Consensus 138 ~~L~~L~l~~~~~ 150 (347)
+.|+.++++.|.+
T Consensus 228 T~LkgVDFSdC~L 240 (512)
T PRK09718 228 VRISTGNFKDCIT 240 (512)
T ss_pred CcCCCcccccccc
Confidence 4455555555543
Done!