Query 040206
Match_columns 347
No_of_seqs 213 out of 3429
Neff 10.9
Searched_HMMs 29240
Date Mon Mar 25 09:28:24 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040206.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/040206hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rgz_A Protein brassinosteroid 100.0 7.4E-36 2.5E-40 287.0 25.5 325 2-327 296-713 (768)
2 3rgz_A Protein brassinosteroid 100.0 3.9E-35 1.3E-39 282.0 25.8 311 1-313 319-723 (768)
3 3v47_A TOLL-like receptor 5B a 100.0 5.8E-35 2E-39 265.2 22.1 298 1-312 31-413 (455)
4 2id5_A Lingo-1, leucine rich r 100.0 1.8E-33 6.1E-38 256.8 23.9 296 1-311 33-337 (477)
5 4eco_A Uncharacterized protein 100.0 6.6E-33 2.3E-37 260.9 22.1 309 1-315 207-586 (636)
6 4eco_A Uncharacterized protein 100.0 5.4E-32 1.9E-36 254.7 26.7 304 1-309 250-602 (636)
7 3t6q_A CD180 antigen; protein- 100.0 9.6E-32 3.3E-36 252.6 26.7 293 2-311 256-564 (606)
8 3t6q_A CD180 antigen; protein- 100.0 9.8E-32 3.3E-36 252.5 26.3 321 2-325 35-456 (606)
9 2z7x_B TOLL-like receptor 1, v 100.0 7.6E-32 2.6E-36 248.7 24.2 306 1-311 22-485 (520)
10 4fmz_A Internalin; leucine ric 100.0 4.8E-31 1.6E-35 230.9 27.5 289 1-320 45-335 (347)
11 3o6n_A APL1; leucine-rich repe 100.0 1.9E-31 6.7E-36 237.1 24.5 284 1-310 46-355 (390)
12 2id5_A Lingo-1, leucine rich r 100.0 1.3E-31 4.4E-36 244.6 23.0 306 3-325 14-327 (477)
13 3v47_A TOLL-like receptor 5B a 100.0 7.1E-32 2.4E-36 244.9 20.9 306 3-326 13-403 (455)
14 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 2.2E-31 7.4E-36 247.7 24.7 306 1-311 53-514 (562)
15 3vq2_A TLR4, TOLL-like recepto 100.0 2E-31 6.7E-36 250.4 24.1 126 2-129 34-167 (606)
16 4fmz_A Internalin; leucine ric 100.0 9.9E-31 3.4E-35 228.9 25.7 277 1-307 67-346 (347)
17 2ft3_A Biglycan; proteoglycan, 100.0 8.9E-31 3E-35 227.7 24.4 290 2-305 35-331 (332)
18 4ecn_A Leucine-rich repeat pro 100.0 1.6E-30 5.5E-35 249.4 28.3 308 1-315 449-826 (876)
19 1xku_A Decorin; proteoglycan, 100.0 2.1E-30 7.2E-35 225.2 26.3 290 2-305 33-330 (330)
20 3vq2_A TLR4, TOLL-like recepto 100.0 8.6E-31 2.9E-35 246.1 25.7 148 156-317 393-543 (606)
21 4ecn_A Leucine-rich repeat pro 100.0 2.1E-30 7.3E-35 248.5 28.6 306 1-314 492-847 (876)
22 3oja_B Anopheles plasmodium-re 100.0 1.1E-30 3.7E-35 244.4 24.5 283 2-310 53-361 (597)
23 2z7x_B TOLL-like receptor 1, v 100.0 1.6E-30 5.5E-35 239.8 22.7 312 3-324 3-474 (520)
24 1ziw_A TOLL-like receptor 3; i 100.0 9.4E-30 3.2E-34 242.1 28.4 222 1-224 26-286 (680)
25 1ziw_A TOLL-like receptor 3; i 100.0 1.1E-29 3.6E-34 241.8 27.5 315 2-319 250-636 (680)
26 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 1.3E-29 4.4E-34 235.8 25.9 313 3-323 34-502 (562)
27 2z63_A TOLL-like receptor 4, v 100.0 4.4E-30 1.5E-34 239.6 22.6 126 2-129 30-163 (570)
28 1o6v_A Internalin A; bacterial 100.0 2.5E-29 8.6E-34 228.5 26.3 293 2-308 48-389 (466)
29 2z81_A CD282 antigen, TOLL-lik 100.0 1.5E-29 5.1E-34 235.0 24.2 80 2-83 28-111 (549)
30 2z63_A TOLL-like receptor 4, v 100.0 1.7E-29 5.9E-34 235.6 24.5 225 72-312 306-536 (570)
31 3j0a_A TOLL-like receptor 5; m 100.0 1.4E-29 4.6E-34 245.9 24.6 293 1-308 25-376 (844)
32 1o6v_A Internalin A; bacterial 100.0 1.7E-28 5.7E-33 223.1 28.2 214 20-246 43-278 (466)
33 3bz5_A Internalin-J, INLJ; leu 100.0 2.1E-28 7.2E-33 221.0 27.7 281 1-308 43-353 (457)
34 1xku_A Decorin; proteoglycan, 100.0 8E-29 2.7E-33 215.3 23.3 265 1-281 53-330 (330)
35 1ogq_A PGIP-2, polygalacturona 100.0 1.2E-29 4E-34 218.5 17.4 247 23-307 50-304 (313)
36 2ft3_A Biglycan; proteoglycan, 100.0 2.2E-28 7.5E-33 212.6 21.9 264 1-281 55-331 (332)
37 3j0a_A TOLL-like receptor 5; m 100.0 4.5E-28 1.6E-32 235.2 24.2 306 3-326 7-370 (844)
38 3o6n_A APL1; leucine-rich repe 100.0 1.8E-27 6E-32 211.6 25.8 266 21-310 43-334 (390)
39 3bz5_A Internalin-J, INLJ; leu 100.0 6.5E-27 2.2E-31 211.3 26.7 283 1-316 65-396 (457)
40 2z80_A TOLL-like receptor 2, v 100.0 4.8E-29 1.6E-33 218.7 12.2 277 21-311 29-318 (353)
41 4g8a_A TOLL-like receptor 4; l 100.0 7.2E-27 2.5E-31 220.5 27.5 126 2-129 54-187 (635)
42 1jl5_A Outer protein YOPM; leu 100.0 7.3E-27 2.5E-31 210.8 26.0 271 2-318 133-422 (454)
43 2z81_A CD282 antigen, TOLL-lik 100.0 8E-28 2.7E-32 223.3 19.1 191 5-200 10-210 (549)
44 3oja_B Anopheles plasmodium-re 100.0 8.6E-27 2.9E-31 218.0 25.1 266 21-310 49-340 (597)
45 3g06_A SSPH2 (leucine-rich rep 100.0 1.1E-26 3.8E-31 215.9 25.3 268 1-318 41-308 (622)
46 2z66_A Variable lymphocyte rec 100.0 2.3E-27 7.7E-32 203.9 18.5 218 4-247 11-237 (306)
47 1ogq_A PGIP-2, polygalacturona 100.0 1.6E-27 5.4E-32 205.2 16.9 236 70-321 50-294 (313)
48 2z66_A Variable lymphocyte rec 100.0 4.2E-27 1.5E-31 202.2 19.3 247 52-311 10-265 (306)
49 4g8a_A TOLL-like receptor 4; l 100.0 3.2E-26 1.1E-30 216.1 26.1 103 1-105 77-187 (635)
50 1ozn_A Reticulon 4 receptor; N 99.9 3E-26 1E-30 194.8 22.6 226 73-311 14-242 (285)
51 1z7x_W Ribonuclease inhibitor; 99.9 9.3E-30 3.2E-34 231.3 -0.4 246 1-247 29-327 (461)
52 4fcg_A Uncharacterized protein 99.9 3.2E-26 1.1E-30 198.3 20.4 219 1-223 82-314 (328)
53 1jl5_A Outer protein YOPM; leu 99.9 2.5E-26 8.4E-31 207.4 20.2 228 1-247 12-271 (454)
54 3zyj_A Leucine-rich repeat-con 99.9 1.2E-25 4.1E-30 202.8 24.3 246 50-310 44-295 (440)
55 3zyi_A Leucine-rich repeat-con 99.9 1.3E-25 4.5E-30 203.3 24.3 246 51-311 56-307 (452)
56 1ozn_A Reticulon 4 receptor; N 99.9 1.8E-25 6E-30 190.1 19.7 217 3-223 14-238 (285)
57 3o53_A Protein LRIM1, AGAP0063 99.9 3.2E-27 1.1E-31 203.8 8.0 250 18-313 29-282 (317)
58 4fcg_A Uncharacterized protein 99.9 1.6E-25 5.6E-30 193.8 17.9 217 92-324 82-307 (328)
59 3zyj_A Leucine-rich repeat-con 99.9 1.3E-24 4.5E-29 196.0 21.8 241 71-325 44-286 (440)
60 3zyi_A Leucine-rich repeat-con 99.9 1.3E-24 4.3E-29 196.8 21.6 241 71-325 55-297 (452)
61 2z62_A TOLL-like receptor 4, v 99.9 1.9E-24 6.5E-29 182.9 20.8 223 75-311 12-241 (276)
62 3g06_A SSPH2 (leucine-rich rep 99.9 6.3E-24 2.1E-28 197.5 25.9 248 1-295 62-309 (622)
63 1z7x_W Ribonuclease inhibitor; 99.9 7E-28 2.4E-32 218.9 -0.9 298 1-309 57-413 (461)
64 2z80_A TOLL-like receptor 2, v 99.9 6.4E-25 2.2E-29 192.4 15.5 269 47-326 29-309 (353)
65 3oja_A Leucine-rich immune mol 99.9 2.5E-25 8.4E-30 202.7 12.3 243 14-302 21-270 (487)
66 3o53_A Protein LRIM1, AGAP0063 99.9 1.3E-25 4.6E-30 193.6 8.3 233 1-243 35-272 (317)
67 1wwl_A Monocyte differentiatio 99.9 6.8E-26 2.3E-30 195.0 4.9 244 19-308 39-310 (312)
68 2o6q_A Variable lymphocyte rec 99.9 1.1E-22 3.6E-27 171.5 22.4 205 71-311 17-222 (270)
69 1wwl_A Monocyte differentiatio 99.9 7.2E-25 2.5E-29 188.6 8.8 240 2-284 45-310 (312)
70 3oja_A Leucine-rich immune mol 99.9 1.1E-23 3.9E-28 191.7 15.2 213 1-223 35-250 (487)
71 2z62_A TOLL-like receptor 4, v 99.9 3E-22 1E-26 169.3 20.6 219 55-286 13-240 (276)
72 1p9a_G Platelet glycoprotein I 99.9 5.4E-22 1.8E-26 168.6 21.3 200 69-284 9-209 (290)
73 3rfs_A Internalin B, repeat mo 99.9 4.8E-22 1.6E-26 167.6 15.7 227 50-320 20-248 (272)
74 2o6q_A Variable lymphocyte rec 99.9 6.8E-21 2.3E-25 160.4 22.5 196 51-246 18-218 (270)
75 3rfs_A Internalin B, repeat mo 99.9 3.5E-22 1.2E-26 168.4 13.9 220 24-253 20-242 (272)
76 1p9a_G Platelet glycoprotein I 99.9 6.2E-21 2.1E-25 162.0 20.4 201 19-247 6-209 (290)
77 2ca6_A RAN GTPase-activating p 99.9 4.9E-24 1.7E-28 189.1 -1.9 261 14-310 23-319 (386)
78 3ogk_B Coronatine-insensitive 99.9 1E-23 3.5E-28 197.4 -0.4 301 2-316 140-535 (592)
79 2xwt_C Thyrotropin receptor; s 99.9 1.9E-21 6.6E-26 160.7 13.3 199 89-305 29-237 (239)
80 1h6u_A Internalin H; cell adhe 99.9 1.2E-20 4.2E-25 161.7 18.2 207 54-308 24-231 (308)
81 3goz_A Leucine-rich repeat-con 99.9 4.4E-23 1.5E-27 181.2 2.8 260 5-285 3-299 (362)
82 3m19_A Variable lymphocyte rec 99.9 2.3E-20 8E-25 155.3 19.0 179 116-309 15-194 (251)
83 4glp_A Monocyte differentiatio 99.9 3E-21 1E-25 165.9 13.5 219 71-308 65-308 (310)
84 1h6u_A Internalin H; cell adhe 99.9 2.9E-20 9.9E-25 159.4 19.1 192 19-223 37-230 (308)
85 3goz_A Leucine-rich repeat-con 99.9 1.3E-22 4.4E-27 178.2 4.0 255 27-309 2-299 (362)
86 3m19_A Variable lymphocyte rec 99.8 1.6E-19 5.6E-24 150.2 19.0 149 73-221 17-166 (251)
87 2xwt_C Thyrotropin receptor; s 99.8 4.5E-20 1.5E-24 152.5 14.6 148 91-242 80-235 (239)
88 2ast_B S-phase kinase-associat 99.8 5E-22 1.7E-26 172.8 2.8 231 70-316 70-315 (336)
89 2ast_B S-phase kinase-associat 99.8 6.9E-22 2.3E-26 172.0 3.2 216 25-243 49-282 (336)
90 4glp_A Monocyte differentiatio 99.8 1.4E-20 4.9E-25 161.6 10.6 222 21-247 62-308 (310)
91 3ogk_B Coronatine-insensitive 99.8 6.7E-22 2.3E-26 185.1 1.6 42 268-309 461-503 (592)
92 2p1m_B Transport inhibitor res 99.8 2E-21 7E-26 181.9 0.7 296 1-310 106-522 (594)
93 2ca6_A RAN GTPase-activating p 99.8 6E-21 2.1E-25 169.2 2.0 232 1-249 33-319 (386)
94 2o6s_A Variable lymphocyte rec 99.8 1.9E-18 6.5E-23 139.6 15.4 172 74-251 11-183 (208)
95 2p1m_B Transport inhibitor res 99.8 2.5E-21 8.4E-26 181.4 -1.9 321 1-323 67-511 (594)
96 4ay9_X Follicle-stimulating ho 99.8 1.7E-18 5.8E-23 151.2 15.9 236 52-305 12-257 (350)
97 3cvr_A Invasion plasmid antige 99.8 7.5E-18 2.6E-22 154.9 19.2 188 50-294 60-254 (571)
98 1h6t_A Internalin B; cell adhe 99.8 4.3E-18 1.5E-22 144.7 15.6 169 91-308 46-214 (291)
99 3cvr_A Invasion plasmid antige 99.8 5.9E-18 2E-22 155.6 17.2 184 24-230 60-250 (571)
100 4ay9_X Follicle-stimulating ho 99.8 5.5E-18 1.9E-22 148.0 16.2 191 4-199 13-215 (350)
101 2o6s_A Variable lymphocyte rec 99.8 4.2E-18 1.4E-22 137.5 14.1 179 119-319 11-190 (208)
102 3e6j_A Variable lymphocyte rec 99.8 1E-17 3.5E-22 137.2 15.9 156 139-311 20-176 (229)
103 2v9t_B SLIT homolog 2 protein 99.8 1.4E-17 4.7E-22 135.5 14.7 155 141-311 14-169 (220)
104 2xot_A Amphoterin-induced prot 99.8 1.3E-17 4.3E-22 146.3 14.4 179 119-309 22-204 (361)
105 2v70_A SLIT-2, SLIT homolog 2 99.7 2.8E-17 9.6E-22 133.7 15.1 155 141-311 14-170 (220)
106 1m9s_A Internalin B; cell inva 99.7 1E-17 3.5E-22 155.6 13.6 189 72-285 23-212 (605)
107 1h6t_A Internalin B; cell adhe 99.7 1.5E-17 5E-22 141.4 13.4 189 49-247 24-214 (291)
108 2v9t_B SLIT homolog 2 protein 99.7 6.3E-17 2.1E-21 131.6 16.1 150 74-223 15-165 (220)
109 2v70_A SLIT-2, SLIT homolog 2 99.7 7.8E-17 2.7E-21 131.1 15.1 150 74-223 15-166 (220)
110 1m9s_A Internalin B; cell inva 99.7 1.5E-17 5.1E-22 154.5 12.2 188 23-223 21-210 (605)
111 3e6j_A Variable lymphocyte rec 99.7 1.8E-16 6.3E-21 129.7 16.8 153 72-225 21-174 (229)
112 4ezg_A Putative uncharacterize 99.7 3.7E-17 1.3E-21 130.7 12.4 150 138-308 44-195 (197)
113 2xot_A Amphoterin-induced prot 99.7 6.9E-17 2.3E-21 141.6 14.3 173 51-223 20-202 (361)
114 1xeu_A Internalin C; cellular 99.7 2.3E-17 7.7E-22 138.0 8.4 168 91-284 19-186 (263)
115 4ezg_A Putative uncharacterize 99.7 8.8E-17 3E-21 128.5 11.5 153 113-284 42-195 (197)
116 1xeu_A Internalin C; cellular 99.7 1.6E-16 5.6E-21 132.8 11.2 161 6-200 25-186 (263)
117 3sb4_A Hypothetical leucine ri 99.6 3.7E-16 1.3E-20 135.2 8.0 262 21-301 23-328 (329)
118 2ell_A Acidic leucine-rich nuc 99.6 1.7E-15 5.7E-20 117.9 10.9 133 162-308 24-161 (168)
119 1dce_A Protein (RAB geranylger 99.6 1.2E-18 4.1E-23 160.9 -8.4 200 20-240 346-567 (567)
120 4b8c_D Glucose-repressible alc 99.6 1.4E-16 4.6E-21 151.6 4.6 151 97-251 207-359 (727)
121 2je0_A Acidic leucine-rich nuc 99.6 3.4E-15 1.2E-19 113.6 9.5 128 162-303 17-149 (149)
122 1w8a_A SLIT protein; signaling 99.6 8.3E-15 2.8E-19 116.4 12.0 128 141-284 11-140 (192)
123 1dce_A Protein (RAB geranylger 99.6 1.5E-17 5.1E-22 153.6 -6.1 203 47-277 347-567 (567)
124 2ell_A Acidic leucine-rich nuc 99.6 1.1E-14 3.7E-19 113.2 9.6 135 138-284 24-161 (168)
125 4fdw_A Leucine rich hypothetic 99.6 4.9E-13 1.7E-17 118.2 20.9 260 21-307 111-383 (401)
126 4b8c_D Glucose-repressible alc 99.6 3.3E-15 1.1E-19 142.1 7.2 155 146-317 209-364 (727)
127 2wfh_A SLIT homolog 2 protein 99.6 6.4E-14 2.2E-18 111.3 13.5 130 141-310 13-142 (193)
128 2o6r_A Variable lymphocyte rec 99.6 5E-14 1.7E-18 110.4 12.5 113 186-311 28-141 (177)
129 3sb4_A Hypothetical leucine ri 99.5 3.4E-14 1.2E-18 122.8 11.4 255 2-277 27-328 (329)
130 1w8a_A SLIT protein; signaling 99.5 3E-14 1E-18 113.2 10.1 86 138-223 54-139 (192)
131 2je0_A Acidic leucine-rich nuc 99.5 3.7E-14 1.3E-18 107.8 9.2 130 138-279 17-149 (149)
132 1a9n_A U2A', U2A'; complex (nu 99.5 3.4E-14 1.2E-18 111.2 9.1 132 159-308 16-154 (176)
133 2wfh_A SLIT homolog 2 protein 99.5 2.4E-13 8.3E-18 107.9 13.8 123 74-197 14-137 (193)
134 2o6r_A Variable lymphocyte rec 99.5 5.8E-13 2E-17 104.3 14.4 127 74-223 11-137 (177)
135 4fdw_A Leucine rich hypothetic 99.5 7.1E-12 2.4E-16 110.8 20.7 248 47-317 111-368 (401)
136 1a9n_A U2A', U2A'; complex (nu 99.4 9E-13 3.1E-17 103.1 9.9 109 111-223 15-126 (176)
137 4fs7_A Uncharacterized protein 99.4 3.2E-11 1.1E-15 106.8 18.6 265 14-304 61-376 (394)
138 1ds9_A Outer arm dynein; leuci 99.4 5.3E-15 1.8E-19 118.2 -5.9 134 157-308 43-186 (198)
139 1ds9_A Outer arm dynein; leuci 99.3 1.4E-14 4.9E-19 115.7 -4.5 119 177-312 39-158 (198)
140 3un9_A NLR family member X1; l 99.3 4.2E-14 1.4E-18 123.9 -4.2 109 115-223 72-196 (372)
141 3g39_A Variable lymphocyte rec 99.3 5.5E-11 1.9E-15 92.2 11.7 104 118-223 12-115 (170)
142 3g39_A Variable lymphocyte rec 99.3 5.3E-11 1.8E-15 92.3 11.6 102 73-174 12-114 (170)
143 3un9_A NLR family member X1; l 99.2 1.7E-13 5.7E-18 120.1 -3.5 137 115-251 101-257 (372)
144 2r9u_A Variable lymphocyte rec 99.2 1.1E-10 3.7E-15 90.9 11.6 103 73-175 15-118 (174)
145 2r9u_A Variable lymphocyte rec 99.2 1.3E-10 4.3E-15 90.5 11.6 104 118-223 15-118 (174)
146 4fs7_A Uncharacterized protein 99.2 2.9E-09 1E-13 94.2 19.2 245 35-304 59-353 (394)
147 4gt6_A Cell surface protein; l 99.1 5.9E-09 2E-13 92.2 20.6 271 14-307 53-370 (394)
148 4gt6_A Cell surface protein; l 99.0 4E-08 1.4E-12 86.8 20.0 278 2-306 66-390 (394)
149 2ifg_A High affinity nerve gro 99.0 1.4E-09 4.7E-14 94.6 9.0 131 165-312 11-146 (347)
150 2ra8_A Uncharacterized protein 99.0 2.1E-10 7.3E-15 99.6 3.5 156 137-305 171-341 (362)
151 2ifg_A High affinity nerve gro 99.0 2.7E-09 9.1E-14 92.8 10.2 102 120-223 13-116 (347)
152 4h09_A Hypothetical leucine ri 98.9 5.2E-07 1.8E-11 79.3 21.5 132 155-303 210-342 (379)
153 1io0_A Tropomodulin; LRR prote 98.9 3.4E-10 1.2E-14 88.9 0.6 121 180-309 30-166 (185)
154 2ra8_A Uncharacterized protein 98.8 4.3E-09 1.5E-13 91.4 6.5 147 156-315 166-328 (362)
155 4h09_A Hypothetical leucine ri 98.6 8.6E-06 2.9E-10 71.4 21.3 262 18-304 41-320 (379)
156 1io0_A Tropomodulin; LRR prote 98.5 4.3E-09 1.5E-13 82.6 -2.2 120 156-284 30-165 (185)
157 3e4g_A ATP synthase subunit S, 98.3 1.7E-07 5.9E-12 71.7 2.1 84 185-281 60-150 (176)
158 3e4g_A ATP synthase subunit S, 98.3 4.1E-07 1.4E-11 69.7 2.9 87 210-305 61-150 (176)
159 1pgv_A TMD-1, tropomodulin TMD 97.9 4.5E-06 1.5E-10 65.1 3.4 117 182-307 37-170 (197)
160 3rw6_A Nuclear RNA export fact 97.9 7.2E-06 2.5E-10 67.6 4.0 75 48-122 169-258 (267)
161 3rw6_A Nuclear RNA export fact 97.9 1.4E-05 4.7E-10 65.9 5.1 66 233-311 170-237 (267)
162 1pgv_A TMD-1, tropomodulin TMD 97.4 2.5E-05 8.4E-10 61.0 0.5 93 203-304 34-136 (197)
163 3rfe_A Platelet glycoprotein I 97.0 0.0013 4.3E-08 47.8 6.1 55 74-128 12-68 (130)
164 3rfe_A Platelet glycoprotein I 97.0 0.0014 4.8E-08 47.5 6.2 39 271-309 32-70 (130)
165 2lz0_A Uncharacterized protein 69.2 9.2 0.00031 25.7 4.9 45 174-219 8-52 (100)
166 2lz0_A Uncharacterized protein 55.8 29 0.001 23.1 5.5 45 103-148 8-53 (100)
No 1
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=7.4e-36 Score=286.99 Aligned_cols=325 Identities=31% Similarity=0.434 Sum_probs=232.7
Q ss_pred ceEEEecCCCCC-CCChhhhcCCCccEEeccCCcccccCChhhhhcCCCcccEEEcCCCcCCCC-CC--CCCC-CCcEEE
Q 040206 2 TIKTQVKTCNIS-EFPDILRTQHQLEWLDLSKNQIRGRIPSWMWDIGVHTLQFLILSQNVLTSI-DH--LPWK-NLQYLT 76 (347)
Q Consensus 2 l~~l~l~~~~~~-~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~-~~--~~~~-~L~~L~ 76 (347)
|++|++++|.+. .+|..+.++++|++|++++|.+.+.+|...+. .+++|++|++++|.+++. +. ..++ +|++|+
T Consensus 296 L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~-~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~ 374 (768)
T 3rgz_A 296 LTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLL-KMRGLKVLDLSFNEFSGELPESLTNLSASLLTLD 374 (768)
T ss_dssp CSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEEEECCHHHHT-TCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEE
T ss_pred CCEEECcCCcCCCccchHHhcCCCccEEECCCCcccCcCCHHHHh-cCCCCCEEeCcCCccCccccHHHHhhhcCCcEEE
Confidence 556666666666 56666666777777777777666666655222 336677777777666532 22 2233 677777
Q ss_pred ccCCCCCccCCCC-----CCCccEEEcccCcccccCCccccCCCCccEEEcccCcccccCCccc-CCccccEEECCCCcc
Q 040206 77 LDSNLLQGSLPDL-----PPHMVQLLISNNSLTGEIPSSFCNLSSIQYLNLSNNSLSGQIPQCL-GNSTLETLDLGMNNF 150 (347)
Q Consensus 77 l~~~~~~~~~~~~-----~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~-~~~~L~~L~l~~~~~ 150 (347)
+++|.+.+..+.. +++|++|++++|.+.+..|..+..+++|++|++++|.+.+..+..+ .+++|+.|++++|.+
T Consensus 375 Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l 454 (768)
T 3rgz_A 375 LSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNML 454 (768)
T ss_dssp CCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCC
T ss_pred ccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcc
Confidence 7777665433222 3568888888888877777888888888888888888876555544 556888888888888
Q ss_pred ccccCccCCCCCCccEEEccCCcccCCCccccccCCCCcEEEccCCcccCCCCccccCCCCCCeEEecCCccccCcCccc
Q 040206 151 QGSIPQTNAKGCNLTSLRLSGNHLEGPLPPSLINCVNLQFLDVGNNNLSGPIPECLGNSTRLSFLDVGNNSLSGPIPECL 230 (347)
Q Consensus 151 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~ 230 (347)
.+..|..+..+++|++|++++|.++...|..+..+++|+.|++++|.+.+..|.++..+++|+.|++++|.+.+..+..+
T Consensus 455 ~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l 534 (768)
T 3rgz_A 455 EGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAEL 534 (768)
T ss_dssp CSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGG
T ss_pred cCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHH
Confidence 77788888888888888888888887778888888888888888888887888888888888888888888876666554
Q ss_pred cc-cCCcEEEcccCcccccCChhhhcc-----------------------------------------------------
Q 040206 231 AN-STLEILDMRMNKFSGSLPQNICKK----------------------------------------------------- 256 (347)
Q Consensus 231 ~~-~~L~~L~L~~~~~~~~~~~~~~~~----------------------------------------------------- 256 (347)
.. ++|+.|++++|.+.+.+|..+...
T Consensus 535 ~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 614 (768)
T 3rgz_A 535 GDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCN 614 (768)
T ss_dssp GGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSC
T ss_pred cCCCCCCEEECCCCccCCcCChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhccccccccc
Confidence 43 788888888888887777654321
Q ss_pred ----------------------------ccccCCCcCccCCCCCcEEEccCCccCCccchhhhhccCCCEEEcccceeec
Q 040206 257 ----------------------------LCFGPLPPSLVNCQYLEVLDVGNNQIDDTFLYWLDVLLQLQVLILRSNRFWG 308 (347)
Q Consensus 257 ----------------------------~~~~~l~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~l~L~~n~~~~ 308 (347)
.-.+.+|..++.+++|+.|+|++|.+++..|..++.+++|+.|||++|.++|
T Consensus 615 l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g 694 (768)
T 3rgz_A 615 ITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDG 694 (768)
T ss_dssp TTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEE
T ss_pred cccceecccCchhhhccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccC
Confidence 0113456667777777777777777777777777777778888888888887
Q ss_pred ccCCccccceeeeeeEeec
Q 040206 309 PIGKLRSRWSGHFIVRTVF 327 (347)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~~ 327 (347)
.+|..+..+..+..+....
T Consensus 695 ~ip~~l~~l~~L~~L~ls~ 713 (768)
T 3rgz_A 695 RIPQAMSALTMLTEIDLSN 713 (768)
T ss_dssp CCCGGGGGCCCCSEEECCS
T ss_pred cCChHHhCCCCCCEEECcC
Confidence 7777777766665555443
No 2
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=3.9e-35 Score=282.00 Aligned_cols=311 Identities=34% Similarity=0.472 Sum_probs=270.0
Q ss_pred CceEEEecCCCCC-CCCh-hhhcCCCccEEeccCCcccccCChhhhhcCCC-cccEEEcCCCcCCCCCC-----CCCCCC
Q 040206 1 KTIKTQVKTCNIS-EFPD-ILRTQHQLEWLDLSKNQIRGRIPSWMWDIGVH-TLQFLILSQNVLTSIDH-----LPWKNL 72 (347)
Q Consensus 1 ~l~~l~l~~~~~~-~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~-~L~~L~l~~~~l~~~~~-----~~~~~L 72 (347)
+|++|++++|.+. .+|. ++.++++|++|++++|.+.+.+|..+... + +|++|++++|.+++... ..+++|
T Consensus 319 ~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l--~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L 396 (768)
T 3rgz_A 319 LLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNL--SASLLTLDLSSNNFSGPILPNLCQNPKNTL 396 (768)
T ss_dssp TCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHH--TTTCSEEECCSSEEEEECCTTTTCSTTCCC
T ss_pred CccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCccCccccHHHHhh--hcCCcEEEccCCCcCCCcChhhhhcccCCc
Confidence 4789999999998 8886 49999999999999999999999998875 6 99999999998765333 226789
Q ss_pred cEEEccCCCCCccCCCC---CCCccEEEcccCcccccCCccccCCCCccEEEcccCcccccCCccc-CCccccEEECCCC
Q 040206 73 QYLTLDSNLLQGSLPDL---PPHMVQLLISNNSLTGEIPSSFCNLSSIQYLNLSNNSLSGQIPQCL-GNSTLETLDLGMN 148 (347)
Q Consensus 73 ~~L~l~~~~~~~~~~~~---~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~-~~~~L~~L~l~~~ 148 (347)
++|++++|.+.+..+.. +++|++|++++|.+.+..|..+..+++|+.|++++|.+.+..+..+ .+++|+.|++++|
T Consensus 397 ~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N 476 (768)
T 3rgz_A 397 QELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFN 476 (768)
T ss_dssp CEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSS
T ss_pred cEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCC
Confidence 99999999988655543 4889999999999998889999999999999999999986666555 5679999999999
Q ss_pred ccccccCccCCCCCCccEEEccCCcccCCCccccccCCCCcEEEccCCcccCCCCccccCCCCCCeEEecCCccccCcCc
Q 040206 149 NFQGSIPQTNAKGCNLTSLRLSGNHLEGPLPPSLINCVNLQFLDVGNNNLSGPIPECLGNSTRLSFLDVGNNSLSGPIPE 228 (347)
Q Consensus 149 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~ 228 (347)
.+.+..|..+..+++|++|++++|.++...|.+++.+++|+.|++++|.+.+..|..+..+++|+.|++++|.+.+..+.
T Consensus 477 ~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~ 556 (768)
T 3rgz_A 477 DLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPA 556 (768)
T ss_dssp CCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCG
T ss_pred cccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCCh
Confidence 99888899999999999999999999988899999999999999999999888899999999999999999988754432
Q ss_pred cc-----------------------------------------------------------------------cccCCcE
Q 040206 229 CL-----------------------------------------------------------------------ANSTLEI 237 (347)
Q Consensus 229 ~~-----------------------------------------------------------------------~~~~L~~ 237 (347)
.+ ..+.|+.
T Consensus 557 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~ 636 (768)
T 3rgz_A 557 AMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMF 636 (768)
T ss_dssp GGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCE
T ss_pred HHhcccchhhhhccccccccccccccccccccccccccccccccchhhhccccccccccccceecccCchhhhccccccE
Confidence 21 0146889
Q ss_pred EEcccCcccccCChhhhcc-----------ccccCCCcCccCCCCCcEEEccCCccCCccchhhhhccCCCEEEccccee
Q 040206 238 LDMRMNKFSGSLPQNICKK-----------LCFGPLPPSLVNCQYLEVLDVGNNQIDDTFLYWLDVLLQLQVLILRSNRF 306 (347)
Q Consensus 238 L~L~~~~~~~~~~~~~~~~-----------~~~~~l~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~l~L~~n~~ 306 (347)
|++++|.+++.+|..+... .-.+.+|..++.+++|++|+|++|++++..|..+..+++|+.|++++|++
T Consensus 637 LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l 716 (768)
T 3rgz_A 637 LDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNL 716 (768)
T ss_dssp EECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEE
T ss_pred EECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCCcc
Confidence 9999999999999887664 23457889999999999999999999999999999999999999999999
Q ss_pred ecccCCc
Q 040206 307 WGPIGKL 313 (347)
Q Consensus 307 ~~~~~~~ 313 (347)
+|.+|..
T Consensus 717 ~g~iP~~ 723 (768)
T 3rgz_A 717 SGPIPEM 723 (768)
T ss_dssp EEECCSS
T ss_pred cccCCCc
Confidence 9999965
No 3
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=100.00 E-value=5.8e-35 Score=265.16 Aligned_cols=298 Identities=21% Similarity=0.252 Sum_probs=234.7
Q ss_pred CceEEEecCCCCCCC-ChhhhcCCCccEEeccCCcccccCChhhhhcCCCcccEEEcCCCcCCCCCC---CCCCCCcEEE
Q 040206 1 KTIKTQVKTCNISEF-PDILRTQHQLEWLDLSKNQIRGRIPSWMWDIGVHTLQFLILSQNVLTSIDH---LPWKNLQYLT 76 (347)
Q Consensus 1 ~l~~l~l~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~---~~~~~L~~L~ 76 (347)
++++|++++|.++.+ |..+.++++|++|++++|.+.+.++...+. ++++|++|++++|.++.+.. ..+++|++|+
T Consensus 31 ~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~-~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 109 (455)
T 3v47_A 31 HVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFR-GLSSLIILKLDYNQFLQLETGAFNGLANLEVLT 109 (455)
T ss_dssp TCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTT-TCTTCCEEECTTCTTCEECTTTTTTCTTCCEEE
T ss_pred ccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECccccc-ccccCCEEeCCCCccCccChhhccCcccCCEEe
Confidence 478999999999954 778999999999999999987676554444 55999999999999988754 5678999999
Q ss_pred ccCCCCCccC-----CCCCCCccEEEcccCcccccCCcc-ccCCCCccEEEcccCcccccCCccc---------------
Q 040206 77 LDSNLLQGSL-----PDLPPHMVQLLISNNSLTGEIPSS-FCNLSSIQYLNLSNNSLSGQIPQCL--------------- 135 (347)
Q Consensus 77 l~~~~~~~~~-----~~~~~~L~~L~l~~~~~~~~~~~~-~~~l~~L~~L~l~~~~~~~~~~~~~--------------- 135 (347)
+++|.+.+.. ...+++|++|++++|.+....+.. +..+++|++|++++|.+....+..+
T Consensus 110 L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~~ 189 (455)
T 3v47_A 110 LTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSS 189 (455)
T ss_dssp CTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEEEECTT
T ss_pred CCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhhhhcccccccccccccc
Confidence 9999987522 334589999999999999776665 7899999999999998876555433
Q ss_pred --------------------CCccccEEECCCCccccccCccC-------------------------------------
Q 040206 136 --------------------GNSTLETLDLGMNNFQGSIPQTN------------------------------------- 158 (347)
Q Consensus 136 --------------------~~~~L~~L~l~~~~~~~~~~~~~------------------------------------- 158 (347)
..++|+.|++++|.+....+..+
T Consensus 190 n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~ 269 (455)
T 3v47_A 190 ITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTF 269 (455)
T ss_dssp CBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTTTT
T ss_pred CcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccccchhhhccCccccc
Confidence 12457777777775532221111
Q ss_pred C--CCCCccEEEccCCcccCCCccccccCCCCcEEEccCCcccCCCCccccCCCCCCeEEecCCccccCcCcccc-ccCC
Q 040206 159 A--KGCNLTSLRLSGNHLEGPLPPSLINCVNLQFLDVGNNNLSGPIPECLGNSTRLSFLDVGNNSLSGPIPECLA-NSTL 235 (347)
Q Consensus 159 ~--~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~-~~~L 235 (347)
. ..++|+++++++|.++...+..++.+++|+.|++++|.+.+..+..+..+++|+.|++++|.+.+..+..+. .++|
T Consensus 270 ~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L 349 (455)
T 3v47_A 270 KGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKL 349 (455)
T ss_dssp GGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTC
T ss_pred ccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccC
Confidence 0 124677777777777766677788888888888888888877777888888888888888888766555544 4788
Q ss_pred cEEEcccCcccccCChhhhccccccCCCcCccCCCCCcEEEccCCccCCccchhhhhccCCCEEEcccceeecccCC
Q 040206 236 EILDMRMNKFSGSLPQNICKKLCFGPLPPSLVNCQYLEVLDVGNNQIDDTFLYWLDVLLQLQVLILRSNRFWGPIGK 312 (347)
Q Consensus 236 ~~L~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~l~L~~n~~~~~~~~ 312 (347)
+.|++++|.+++. .|..+..+++|++|++++|.+++.++..+..+++|+.|++++|++.+.+|.
T Consensus 350 ~~L~Ls~N~l~~~-------------~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~ 413 (455)
T 3v47_A 350 EVLDLSYNHIRAL-------------GDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR 413 (455)
T ss_dssp CEEECCSSCCCEE-------------CTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTT
T ss_pred CEEECCCCccccc-------------ChhhccccccccEEECCCCccccCCHhHhccCCcccEEEccCCCcccCCCc
Confidence 8899998888754 345678899999999999999987877889999999999999999999883
No 4
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=100.00 E-value=1.8e-33 Score=256.79 Aligned_cols=296 Identities=22% Similarity=0.192 Sum_probs=249.4
Q ss_pred CceEEEecCCCCCCC-ChhhhcCCCccEEeccCCcccccCChhhhhcCCCcccEEEcCCCcCCCCCC---CCCCCCcEEE
Q 040206 1 KTIKTQVKTCNISEF-PDILRTQHQLEWLDLSKNQIRGRIPSWMWDIGVHTLQFLILSQNVLTSIDH---LPWKNLQYLT 76 (347)
Q Consensus 1 ~l~~l~l~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~---~~~~~L~~L~ 76 (347)
.++.|+|++|.++.+ +.+|.++++|++|++++|.+.+..|..+..+ ++|++|++++|.++.++. ..+++|++|+
T Consensus 33 ~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l--~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 110 (477)
T 2id5_A 33 ETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNL--FNLRTLGLRSNRLKLIPLGVFTGLSNLTKLD 110 (477)
T ss_dssp TCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTC--TTCCEEECCSSCCCSCCTTSSTTCTTCCEEE
T ss_pred CCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCC--ccCCEEECCCCcCCccCcccccCCCCCCEEE
Confidence 368899999999965 4689999999999999999987667777654 999999999999998876 4678999999
Q ss_pred ccCCCCCccCCCC---CCCccEEEcccCcccccCCccccCCCCccEEEcccCcccccCCccc-CCccccEEECCCCcccc
Q 040206 77 LDSNLLQGSLPDL---PPHMVQLLISNNSLTGEIPSSFCNLSSIQYLNLSNNSLSGQIPQCL-GNSTLETLDLGMNNFQG 152 (347)
Q Consensus 77 l~~~~~~~~~~~~---~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~ 152 (347)
+++|.+....+.. +++|++|++++|.+....+..|..+++|+.|++++|.+....+..+ .+++|+.|++++|.+..
T Consensus 111 Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~ 190 (477)
T 2id5_A 111 ISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINA 190 (477)
T ss_dssp CTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCE
T ss_pred CCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcE
Confidence 9999988665433 4899999999999988888889999999999999998886655433 56799999999999887
Q ss_pred ccCccCCCCCCccEEEccCCcccCCCccccccCCCCcEEEccCCcccCCCCccccCCCCCCeEEecCCccccCcCcccc-
Q 040206 153 SIPQTNAKGCNLTSLRLSGNHLEGPLPPSLINCVNLQFLDVGNNNLSGPIPECLGNSTRLSFLDVGNNSLSGPIPECLA- 231 (347)
Q Consensus 153 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~- 231 (347)
..+..+..+++|++|++++|......+.......+|+.|++++|.+.+..+..+..+++|+.|++++|.+++..+..+.
T Consensus 191 ~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~ 270 (477)
T 2id5_A 191 IRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHE 270 (477)
T ss_dssp ECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCEECTTSCTT
T ss_pred eChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccccCHHHhcCccccCeeECCCCcCCccChhhccc
Confidence 7777888999999999999876655555555566999999999999866556788999999999999999876665444
Q ss_pred ccCCcEEEcccCcccccCChhhhccccccCCCcCccCCCCCcEEEccCCccCCccchhhhhccCCCEEEcccceeecccC
Q 040206 232 NSTLEILDMRMNKFSGSLPQNICKKLCFGPLPPSLVNCQYLEVLDVGNNQIDDTFLYWLDVLLQLQVLILRSNRFWGPIG 311 (347)
Q Consensus 232 ~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~l~L~~n~~~~~~~ 311 (347)
.++|+.|++++|.+.+. .+..+..+++|++|++++|.+++..+..+..+++|+.|++++|++.+...
T Consensus 271 l~~L~~L~L~~n~l~~~-------------~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~c~c~ 337 (477)
T 2id5_A 271 LLRLQEIQLVGGQLAVV-------------EPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLACDCR 337 (477)
T ss_dssp CTTCCEEECCSSCCSEE-------------CTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSSCEECSGG
T ss_pred cccCCEEECCCCccceE-------------CHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEccCCCccCccc
Confidence 38999999999999864 34578899999999999999998888888999999999999999986543
No 5
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=6.6e-33 Score=260.86 Aligned_cols=309 Identities=17% Similarity=0.222 Sum_probs=194.6
Q ss_pred CceEEEecCCCCCC------------------CChhhh--cCCCccEEeccCCcccccCChhhhhcCCCcccEEEcCCCc
Q 040206 1 KTIKTQVKTCNISE------------------FPDILR--TQHQLEWLDLSKNQIRGRIPSWMWDIGVHTLQFLILSQNV 60 (347)
Q Consensus 1 ~l~~l~l~~~~~~~------------------~~~~~~--~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 60 (347)
+|++|+|++|.++. +|+.+. ++++|++|++++|.+.+.+|..+..+ ++|++|++++|.
T Consensus 207 ~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l--~~L~~L~Ls~n~ 284 (636)
T 4eco_A 207 KLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKAL--PEMQLINVACNR 284 (636)
T ss_dssp TCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTC--SSCCEEECTTCT
T ss_pred CCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcC--CCCCEEECcCCC
Confidence 36777777777775 777766 77777777777777777777776654 777777777776
Q ss_pred -CCC--CCC--CC------CCCCcEEEccCCCCCccCC----CCCCCccEEEcccCcccccCCccccCCCCccEEEcccC
Q 040206 61 -LTS--IDH--LP------WKNLQYLTLDSNLLQGSLP----DLPPHMVQLLISNNSLTGEIPSSFCNLSSIQYLNLSNN 125 (347)
Q Consensus 61 -l~~--~~~--~~------~~~L~~L~l~~~~~~~~~~----~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~ 125 (347)
+++ ++. .. +++|++|++++|.++..+. ..+++|++|++++|.+.+.+| .+..+++|++|++++|
T Consensus 285 ~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N 363 (636)
T 4eco_A 285 GISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYN 363 (636)
T ss_dssp TSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCSSCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEESEEECCSS
T ss_pred CCccccchHHHHhhhccccCCCCCEEECCCCcCCccCchhhhccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEECCCC
Confidence 664 332 22 2677777777777763322 124667777777777765555 6666667777777777
Q ss_pred cccccCCcccCCcc-ccEEECCCCccccccCccCCCCC--CccEEEccCCcccCCCccccc-------cCCCCcEEEccC
Q 040206 126 SLSGQIPQCLGNST-LETLDLGMNNFQGSIPQTNAKGC--NLTSLRLSGNHLEGPLPPSLI-------NCVNLQFLDVGN 195 (347)
Q Consensus 126 ~~~~~~~~~~~~~~-L~~L~l~~~~~~~~~~~~~~~~~--~L~~L~l~~~~~~~~~~~~l~-------~~~~L~~L~l~~ 195 (347)
.+...+.....+++ |++|++++|.+. .+|..+.... +|++|++++|.++...|..+. .+++|+.|++++
T Consensus 364 ~l~~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~ 442 (636)
T 4eco_A 364 QITEIPANFCGFTEQVENLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSN 442 (636)
T ss_dssp EEEECCTTSEEECTTCCEEECCSSCCS-SCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCS
T ss_pred ccccccHhhhhhcccCcEEEccCCcCc-ccchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcC
Confidence 66644444444555 777777776665 5555554443 666666666666655555555 555666666666
Q ss_pred CcccCCCCccccCCCCCCeEEecCCccccCcCcccccc--------CCcEEEcccCcccccCChhhh--cc---------
Q 040206 196 NNLSGPIPECLGNSTRLSFLDVGNNSLSGPIPECLANS--------TLEILDMRMNKFSGSLPQNIC--KK--------- 256 (347)
Q Consensus 196 n~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~--------~L~~L~L~~~~~~~~~~~~~~--~~--------- 256 (347)
|.+.+..+..+..+++|+.|++++|.++......+... +|+.|++++|.++ .+|..+. ..
T Consensus 443 N~l~~lp~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls 521 (636)
T 4eco_A 443 NQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLT-KLSDDFRATTLPYLVGIDLS 521 (636)
T ss_dssp SCCCSCCTHHHHTTCCCSEEECCSSCCSBCCSSSSEETTEECTTGGGCCEEECCSSCCC-BCCGGGSTTTCTTCCEEECC
T ss_pred CccCcCCHHHHccCCCCCEEECCCCCCCCcCHHHhccccccccccCCccEEECcCCcCC-ccChhhhhccCCCcCEEECC
Confidence 66664333344456666666666666663333333221 6666666666666 4444332 11
Q ss_pred -ccccCCCcCccCCCCCcEEEc------cCCccCCccchhhhhccCCCEEEcccceeecccCCccc
Q 040206 257 -LCFGPLPPSLVNCQYLEVLDV------GNNQIDDTFLYWLDVLLQLQVLILRSNRFWGPIGKLRS 315 (347)
Q Consensus 257 -~~~~~l~~~~~~~~~L~~L~L------~~n~i~~~~~~~~~~l~~L~~l~L~~n~~~~~~~~~~~ 315 (347)
.....+|..+..+++|++|++ ++|.+.+..+..+..+++|+.|++++|++ +.+|..+.
T Consensus 522 ~N~l~~ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l-~~ip~~~~ 586 (636)
T 4eco_A 522 YNSFSKFPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDI-RKVNEKIT 586 (636)
T ss_dssp SSCCSSCCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCC
T ss_pred CCCCCCcChhhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCCCcC-CccCHhHh
Confidence 122246666777888888888 45666666777777788888888888888 56666543
No 6
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=5.4e-32 Score=254.66 Aligned_cols=304 Identities=21% Similarity=0.290 Sum_probs=244.5
Q ss_pred CceEEEecCCCCC-CCChhhhcCCCccEEeccCCc-ccc-cCChhhhhc----CCCcccEEEcCCCcCCCCCC----CCC
Q 040206 1 KTIKTQVKTCNIS-EFPDILRTQHQLEWLDLSKNQ-IRG-RIPSWMWDI----GVHTLQFLILSQNVLTSIDH----LPW 69 (347)
Q Consensus 1 ~l~~l~l~~~~~~-~~~~~~~~~~~L~~L~l~~~~-~~~-~~~~~~~~~----~~~~L~~L~l~~~~l~~~~~----~~~ 69 (347)
+|++|++++|.+. .+|+.+.++++|++|++++|+ +++ .+|..+..+ .+++|++|++++|.++.++. ..+
T Consensus 250 ~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~~ip~~~~l~~l 329 (636)
T 4eco_A 250 DLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKM 329 (636)
T ss_dssp TCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCSSCCCHHHHTTC
T ss_pred CCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCCccCchhhhccC
Confidence 4789999999877 899999999999999999998 887 788877652 34899999999999998875 678
Q ss_pred CCCcEEEccCCCCCccCCCC--CCCccEEEcccCcccccCCccccCCCC-ccEEEcccCcccccCCcccCC--ccccEEE
Q 040206 70 KNLQYLTLDSNLLQGSLPDL--PPHMVQLLISNNSLTGEIPSSFCNLSS-IQYLNLSNNSLSGQIPQCLGN--STLETLD 144 (347)
Q Consensus 70 ~~L~~L~l~~~~~~~~~~~~--~~~L~~L~l~~~~~~~~~~~~~~~l~~-L~~L~l~~~~~~~~~~~~~~~--~~L~~L~ 144 (347)
++|++|++++|.+.+.++.+ +++|++|++++|.+. ..|..+..+++ |++|++++|.+...+...... ++|+.|+
T Consensus 330 ~~L~~L~L~~N~l~g~ip~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~~lp~~~~~~~l~~L~~L~ 408 (636)
T 4eco_A 330 KKLGMLECLYNQLEGKLPAFGSEIKLASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAID 408 (636)
T ss_dssp TTCCEEECCSCCCEEECCCCEEEEEESEEECCSSEEE-ECCTTSEEECTTCCEEECCSSCCSSCCSCCCTTCSSCEEEEE
T ss_pred CCCCEEeCcCCcCccchhhhCCCCCCCEEECCCCccc-cccHhhhhhcccCcEEEccCCcCcccchhhhhcccCccCEEE
Confidence 99999999999998554433 389999999999999 77778999999 999999999998544332232 3799999
Q ss_pred CCCCccccccCccCC-------CCCCccEEEccCCcccCCCccccccCCCCcEEEccCCcccCCCCccccCC-------C
Q 040206 145 LGMNNFQGSIPQTNA-------KGCNLTSLRLSGNHLEGPLPPSLINCVNLQFLDVGNNNLSGPIPECLGNS-------T 210 (347)
Q Consensus 145 l~~~~~~~~~~~~~~-------~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~~-------~ 210 (347)
+++|.+.+..|..+. .+++|++|++++|.++...+..+..+++|+.|++++|.+....+..+... +
T Consensus 409 Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~~~~~~~~l~ 488 (636)
T 4eco_A 409 FSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTY 488 (636)
T ss_dssp CCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCSBCCSSSSEETTEECTTGG
T ss_pred CcCCcCCCcchhhhcccccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCCCcCHHHhccccccccccC
Confidence 999999877887777 77899999999999985444445668999999999998884333333333 2
Q ss_pred CCCeEEecCCccccCcCccc--cccCCcEEEcccCcccccCChhhhccc-----------------cccCCCcCccCCCC
Q 040206 211 RLSFLDVGNNSLSGPIPECL--ANSTLEILDMRMNKFSGSLPQNICKKL-----------------CFGPLPPSLVNCQY 271 (347)
Q Consensus 211 ~L~~L~l~~~~~~~~~~~~~--~~~~L~~L~L~~~~~~~~~~~~~~~~~-----------------~~~~l~~~~~~~~~ 271 (347)
+|+.|++++|.++....... ..++|+.|++++|.+++ +|..+.... ..+.+|..+..+++
T Consensus 489 ~L~~L~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls~N~l~~-ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~ 567 (636)
T 4eco_A 489 LLTSIDLRFNKLTKLSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPS 567 (636)
T ss_dssp GCCEEECCSSCCCBCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSS
T ss_pred CccEEECcCCcCCccChhhhhccCCCcCEEECCCCCCCC-cChhhhcCCCCCEEECCCCcccccCcccccChHHHhcCCC
Confidence 89999999999885444444 55889999999999987 777665431 14567888999999
Q ss_pred CcEEEccCCccCCccchhhhhccCCCEEEcccceeecc
Q 040206 272 LEVLDVGNNQIDDTFLYWLDVLLQLQVLILRSNRFWGP 309 (347)
Q Consensus 272 L~~L~L~~n~i~~~~~~~~~~l~~L~~l~L~~n~~~~~ 309 (347)
|++|++++|.+.. .|..+. ++|+.|++++|++..-
T Consensus 568 L~~L~Ls~N~l~~-ip~~~~--~~L~~L~Ls~N~l~~~ 602 (636)
T 4eco_A 568 LTQLQIGSNDIRK-VNEKIT--PNISVLDIKDNPNISI 602 (636)
T ss_dssp CCEEECCSSCCCB-CCSCCC--TTCCEEECCSCTTCEE
T ss_pred CCEEECCCCcCCc-cCHhHh--CcCCEEECcCCCCccc
Confidence 9999999999954 454444 7999999999998753
No 7
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=9.6e-32 Score=252.55 Aligned_cols=293 Identities=21% Similarity=0.209 Sum_probs=250.6
Q ss_pred ceEEEecCCCCCCCCh-hhhcCCCccEEeccCCcccccCChhhhhcCCCcccEEEcCCCcCCCCCC---CCCCCCcEEEc
Q 040206 2 TIKTQVKTCNISEFPD-ILRTQHQLEWLDLSKNQIRGRIPSWMWDIGVHTLQFLILSQNVLTSIDH---LPWKNLQYLTL 77 (347)
Q Consensus 2 l~~l~l~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~---~~~~~L~~L~l 77 (347)
++.+++++|.+..++. +|.++++|++|++++|.++ .+|..+.. +++|++|++++|.++.+.. ..+++|++|++
T Consensus 256 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~lp~~l~~--l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 332 (606)
T 3t6q_A 256 VESINLQKHYFFNISSNTFHCFSGLQELDLTATHLS-ELPSGLVG--LSTLKKLVLSANKFENLCQISASNFPSLTHLSI 332 (606)
T ss_dssp EEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSCCS-CCCSSCCS--CTTCCEEECTTCCCSBGGGGCGGGCTTCSEEEC
T ss_pred eeEEEeecCccCccCHHHhccccCCCEEeccCCccC-CCChhhcc--cccCCEEECccCCcCcCchhhhhccCcCCEEEC
Confidence 6789999999997665 6999999999999999998 78887764 4999999999999988744 66799999999
Q ss_pred cCCCCCccCC----CCCCCccEEEcccCcccccC--CccccCCCCccEEEcccCcccccCCccc-CCccccEEECCCCcc
Q 040206 78 DSNLLQGSLP----DLPPHMVQLLISNNSLTGEI--PSSFCNLSSIQYLNLSNNSLSGQIPQCL-GNSTLETLDLGMNNF 150 (347)
Q Consensus 78 ~~~~~~~~~~----~~~~~L~~L~l~~~~~~~~~--~~~~~~l~~L~~L~l~~~~~~~~~~~~~-~~~~L~~L~l~~~~~ 150 (347)
++|.+....+ ..+++|++|++++|.+.... +..+..+++|++|++++|.+....+..+ .+++|+.|++++|.+
T Consensus 333 ~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l 412 (606)
T 3t6q_A 333 KGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRL 412 (606)
T ss_dssp CSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCE
T ss_pred CCCCcccccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcC
Confidence 9998774332 33589999999999998655 6778999999999999999887766655 567999999999998
Q ss_pred ccccCc-cCCCCCCccEEEccCCcccCCCccccccCCCCcEEEccCCcccC---CCCccccCCCCCCeEEecCCccccCc
Q 040206 151 QGSIPQ-TNAKGCNLTSLRLSGNHLEGPLPPSLINCVNLQFLDVGNNNLSG---PIPECLGNSTRLSFLDVGNNSLSGPI 226 (347)
Q Consensus 151 ~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~---~~~~~l~~~~~L~~L~l~~~~~~~~~ 226 (347)
....+. .+..+++|++|++++|.+....+..+..+++|++|++++|.+.+ ..+..+..+++|+.|++++|.+++..
T Consensus 413 ~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~ 492 (606)
T 3t6q_A 413 KVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSID 492 (606)
T ss_dssp ECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEEC
T ss_pred CCcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCccC
Confidence 765544 48889999999999999987888889999999999999999875 23356889999999999999998776
Q ss_pred Ccccc-ccCCcEEEcccCcccccCChhhhccccccCCCcCccCCCCCcEEEccCCccCCccchhhhhccCCCEEEcccce
Q 040206 227 PECLA-NSTLEILDMRMNKFSGSLPQNICKKLCFGPLPPSLVNCQYLEVLDVGNNQIDDTFLYWLDVLLQLQVLILRSNR 305 (347)
Q Consensus 227 ~~~~~-~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~l~L~~n~ 305 (347)
+..+. .++|+.|++++|.+++.+| ..+..++.| +|++++|.+++.++..+..+++|+.+++++|+
T Consensus 493 ~~~~~~l~~L~~L~Ls~N~l~~~~~-------------~~l~~l~~L-~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~ 558 (606)
T 3t6q_A 493 QHAFTSLKMMNHVDLSHNRLTSSSI-------------EALSHLKGI-YLNLASNHISIILPSLLPILSQQRTINLRQNP 558 (606)
T ss_dssp TTTTTTCTTCCEEECCSSCCCGGGG-------------GGGTTCCSC-EEECCSSCCCCCCGGGHHHHHTSSEEECTTCC
T ss_pred hhhhccccCCCEEECCCCccCcCCh-------------hHhCccccc-EEECcCCcccccCHhhcccCCCCCEEeCCCCC
Confidence 65554 4899999999999997544 467788999 99999999999888889999999999999999
Q ss_pred eecccC
Q 040206 306 FWGPIG 311 (347)
Q Consensus 306 ~~~~~~ 311 (347)
+.+.++
T Consensus 559 ~~c~c~ 564 (606)
T 3t6q_A 559 LDCTCS 564 (606)
T ss_dssp EECSGG
T ss_pred ccccCC
Confidence 998776
No 8
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=9.8e-32 Score=252.50 Aligned_cols=321 Identities=20% Similarity=0.179 Sum_probs=176.9
Q ss_pred ceEEEecCCCCCCC-ChhhhcCCCccEEeccCCcccccCChhhhhcCCCcccEEEcCCCcCCCCCC--------------
Q 040206 2 TIKTQVKTCNISEF-PDILRTQHQLEWLDLSKNQIRGRIPSWMWDIGVHTLQFLILSQNVLTSIDH-------------- 66 (347)
Q Consensus 2 l~~l~l~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~-------------- 66 (347)
+++|++++|.++.+ |.+|.++++|++|++++|.+.+..|..+... ++|++|++++|.++.+..
T Consensus 35 l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l--~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 112 (606)
T 3t6q_A 35 TECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQ--HRLDTLVLTANPLIFMAETALSGPKALKHLFF 112 (606)
T ss_dssp CCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTC--TTCCEEECTTCCCSEECTTTTSSCTTCCEEEC
T ss_pred CcEEEccCCccCcCChhHhccCccceEEECCCCccceeChhhccCc--cccCeeeCCCCcccccChhhhcccccccEeec
Confidence 44555555555533 3455555555555555555554444444322 555555555554444322
Q ss_pred -------------CCCCCCcEEEccCCCCCccC-CCC--CCCccEEEcccCcccccCCccccCCCCcc--EEEcccCccc
Q 040206 67 -------------LPWKNLQYLTLDSNLLQGSL-PDL--PPHMVQLLISNNSLTGEIPSSFCNLSSIQ--YLNLSNNSLS 128 (347)
Q Consensus 67 -------------~~~~~L~~L~l~~~~~~~~~-~~~--~~~L~~L~l~~~~~~~~~~~~~~~l~~L~--~L~l~~~~~~ 128 (347)
..+++|++|++++|.+.+.. +.. +++|++|++++|.+....+..+..+++|+ .|++++|.+.
T Consensus 113 ~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~L~l~~n~l~ 192 (606)
T 3t6q_A 113 IQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIA 192 (606)
T ss_dssp TTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECHHHHHTTTTCCSEEEECTTCCCC
T ss_pred cccCcccCCcchhccCCcccEEECCCCcccccCcccccCCcccCEEEcccCcccccChhhhhhhcccceeEEecCCCccC
Confidence 33344555555555544321 111 25555555555555544445555555555 5555555555
Q ss_pred ccCCcccCCc----------------------------------------------------cccEEECCCCccccccCc
Q 040206 129 GQIPQCLGNS----------------------------------------------------TLETLDLGMNNFQGSIPQ 156 (347)
Q Consensus 129 ~~~~~~~~~~----------------------------------------------------~L~~L~l~~~~~~~~~~~ 156 (347)
...+..+... +++.+++++|.+....+.
T Consensus 193 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l~~~~~~ 272 (606)
T 3t6q_A 193 GIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSN 272 (606)
T ss_dssp EECTTTTTTCEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTCCCSSCCTT
T ss_pred ccChhHhhhccccccccCCchhHHHHhhhccccchhheechhhccccccccChhHhchhhcCceeEEEeecCccCccCHH
Confidence 4443333222 345555555555544455
Q ss_pred cCCCCCCccEEEccCCcccCCCccccccCCCCcEEEccCCcccCCCCccccCCCCCCeEEecCCccccCcC-c-cccccC
Q 040206 157 TNAKGCNLTSLRLSGNHLEGPLPPSLINCVNLQFLDVGNNNLSGPIPECLGNSTRLSFLDVGNNSLSGPIP-E-CLANST 234 (347)
Q Consensus 157 ~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~-~-~~~~~~ 234 (347)
.+..+++|++|++++|.++ ..|..+..+++|++|++++|.+.+..+..+..+++|+.|++++|.+....+ . ....++
T Consensus 273 ~~~~l~~L~~L~l~~n~l~-~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~ 351 (606)
T 3t6q_A 273 TFHCFSGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLEN 351 (606)
T ss_dssp TTTTCTTCSEEECTTSCCS-CCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTT
T ss_pred HhccccCCCEEeccCCccC-CCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhhccCc
Confidence 5666777777777777776 556667777777777777777765556666677777777777776553322 2 222366
Q ss_pred CcEEEcccCcccccC--Chhhhcc----------cc-ccCCCcCccCCCCCcEEEccCCccCCccc-hhhhhccCCCEEE
Q 040206 235 LEILDMRMNKFSGSL--PQNICKK----------LC-FGPLPPSLVNCQYLEVLDVGNNQIDDTFL-YWLDVLLQLQVLI 300 (347)
Q Consensus 235 L~~L~L~~~~~~~~~--~~~~~~~----------~~-~~~l~~~~~~~~~L~~L~L~~n~i~~~~~-~~~~~l~~L~~l~ 300 (347)
|++|++++|.+.+.. +..+... .. .+..+..+..+++|++|++++|.+.+..+ ..+..+++|+.|+
T Consensus 352 L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ 431 (606)
T 3t6q_A 352 LRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLN 431 (606)
T ss_dssp CCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEE
T ss_pred CCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEE
Confidence 777777777666432 2222111 00 11224456666777777777777665433 3366677777777
Q ss_pred cccceeecccCCccccceeeeeeEe
Q 040206 301 LRSNRFWGPIGKLRSRWSGHFIVRT 325 (347)
Q Consensus 301 L~~n~~~~~~~~~~~~~~~~~~~~~ 325 (347)
+++|.+.+..|..+.....+..+..
T Consensus 432 l~~n~l~~~~~~~~~~l~~L~~L~L 456 (606)
T 3t6q_A 432 LSHSLLDISSEQLFDGLPALQHLNL 456 (606)
T ss_dssp CTTCCCBTTCTTTTTTCTTCCEEEC
T ss_pred CCCCccCCcCHHHHhCCCCCCEEEC
Confidence 7777777666666666555554443
No 9
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=100.00 E-value=7.6e-32 Score=248.68 Aligned_cols=306 Identities=23% Similarity=0.177 Sum_probs=204.4
Q ss_pred CceEEEecCCCCCCCC-hhhhcCCCccEEeccCCcccccCChhhhhcCCCcccEEEcCCCcCCCCCCCCCCCCcEEEccC
Q 040206 1 KTIKTQVKTCNISEFP-DILRTQHQLEWLDLSKNQIRGRIPSWMWDIGVHTLQFLILSQNVLTSIDHLPWKNLQYLTLDS 79 (347)
Q Consensus 1 ~l~~l~l~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~L~~L~l~~ 79 (347)
++++|++++|.+..++ .+|.++++|++|++++|++++..|..+..+ ++|++|++++|.++.++...+++|++|++++
T Consensus 22 ~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l--~~L~~L~Ls~N~l~~lp~~~l~~L~~L~L~~ 99 (520)
T 2z7x_B 22 KTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFN--QELEYLDLSHNKLVKISCHPTVNLKHLDLSF 99 (520)
T ss_dssp TCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTC--TTCCEEECCSSCCCEEECCCCCCCSEEECCS
T ss_pred cccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcc--cCCCEEecCCCceeecCccccCCccEEeccC
Confidence 4788899999888666 588889999999999998886667677654 8899999999988887777788888888888
Q ss_pred CCCCcc-CC---CCCCCccEEEcccCcccccCCccccCCCCc--cEEEcccCcc--cccCCcccC---------------
Q 040206 80 NLLQGS-LP---DLPPHMVQLLISNNSLTGEIPSSFCNLSSI--QYLNLSNNSL--SGQIPQCLG--------------- 136 (347)
Q Consensus 80 ~~~~~~-~~---~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L--~~L~l~~~~~--~~~~~~~~~--------------- 136 (347)
|.+.+. .+ ..+++|++|++++|.+.. ..+..+++| +.|++++|.+ ....+..+.
T Consensus 100 N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~---~~~~~l~~L~L~~L~l~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~ 176 (520)
T 2z7x_B 100 NAFDALPICKEFGNMSQLKFLGLSTTHLEK---SSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNK 176 (520)
T ss_dssp SCCSSCCCCGGGGGCTTCCEEEEEESSCCG---GGGGGGTTSCEEEEEEEECTTTTSSCCTTTTTTCCEEEEEEECCSSS
T ss_pred CccccccchhhhccCCcceEEEecCcccch---hhccccccceeeEEEeecccccccccccccccccccceEEEEeccCc
Confidence 888753 22 224777777777776653 123333333 4444444433 111110000
Q ss_pred ---------------------------------------------------------------------CccccEEECCC
Q 040206 137 ---------------------------------------------------------------------NSTLETLDLGM 147 (347)
Q Consensus 137 ---------------------------------------------------------------------~~~L~~L~l~~ 147 (347)
.++|++|++++
T Consensus 177 ~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~L~l~~ 256 (520)
T 2z7x_B 177 EFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISN 256 (520)
T ss_dssp CCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHHGGGGCTTCCEEEEEEEEEEHHHHHHHHHHHHTSSCSEEEEEE
T ss_pred chhhhhhhhhhcccceeeccccccccccccceeecchhhhccccchhhccccccccCHHHHHHHHHHhhhCcccEEEeec
Confidence 01233333333
Q ss_pred CccccccCccC-----------------------------------------------------CCCCCccEEEccCCcc
Q 040206 148 NNFQGSIPQTN-----------------------------------------------------AKGCNLTSLRLSGNHL 174 (347)
Q Consensus 148 ~~~~~~~~~~~-----------------------------------------------------~~~~~L~~L~l~~~~~ 174 (347)
|.+.+..|..+ ..+++|++|++++|.+
T Consensus 257 n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls~n~l 336 (520)
T 2z7x_B 257 VKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLL 336 (520)
T ss_dssp EEEESCCCCCCCCCCSCCCCEEEEEEEEECCCCSCTHHHHHHHHTCCCSEEEEESSCCCCCCCCSSCCCCCEEECCSSCC
T ss_pred ccccCccccchhhcccccCceeEeccccccceecchhhhhcccccCceeEEEcCCCccccccchhhCCcccEEEeECCcc
Confidence 33322222211 4567788888888887
Q ss_pred cCCCccccccCCCCcEEEccCCcccC--CCCccccCCCCCCeEEecCCccccCcCc-cc-cccCCcEEEcccCcccccCC
Q 040206 175 EGPLPPSLINCVNLQFLDVGNNNLSG--PIPECLGNSTRLSFLDVGNNSLSGPIPE-CL-ANSTLEILDMRMNKFSGSLP 250 (347)
Q Consensus 175 ~~~~~~~l~~~~~L~~L~l~~n~~~~--~~~~~l~~~~~L~~L~l~~~~~~~~~~~-~~-~~~~L~~L~L~~~~~~~~~~ 250 (347)
+...+..++.+++|+.|++++|.+.+ ..|..+..+++|+.|++++|.+.+..+. .+ ..++|+.|++++|.+++.+|
T Consensus 337 ~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~ 416 (520)
T 2z7x_B 337 TDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIF 416 (520)
T ss_dssp CTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTCCEEECCSSCCCGGGG
T ss_pred ChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCccCCEEECcCCCCCcchh
Confidence 76667777788888888888887774 3445677788888888888887763332 22 23677788888877776555
Q ss_pred hhhhc-c-------ccccCCCcCccCCCCCcEEEccCCccCCccchhhhhccCCCEEEcccceeecccC
Q 040206 251 QNICK-K-------LCFGPLPPSLVNCQYLEVLDVGNNQIDDTFLYWLDVLLQLQVLILRSNRFWGPIG 311 (347)
Q Consensus 251 ~~~~~-~-------~~~~~l~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~l~L~~n~~~~~~~ 311 (347)
..+.. . .....+|..+..+++|++|++++|.+++.+...+..+++|+.|++++|++.+.++
T Consensus 417 ~~l~~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N~~~c~c~ 485 (520)
T 2z7x_B 417 RCLPPRIKVLDLHSNKIKSIPKQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 485 (520)
T ss_dssp GSCCTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred hhhcccCCEEECCCCcccccchhhhcCCCCCEEECCCCcCCccCHHHhccCCcccEEECcCCCCcccCC
Confidence 54321 1 2344677767788888999999998886555557888889999999998887655
No 10
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=100.00 E-value=4.8e-31 Score=230.94 Aligned_cols=289 Identities=23% Similarity=0.302 Sum_probs=239.5
Q ss_pred CceEEEecCCCCCCCChhhhcCCCccEEeccCCcccccCChhhhhcCCCcccEEEcCCCcCCCCCC-CCCCCCcEEEccC
Q 040206 1 KTIKTQVKTCNISEFPDILRTQHQLEWLDLSKNQIRGRIPSWMWDIGVHTLQFLILSQNVLTSIDH-LPWKNLQYLTLDS 79 (347)
Q Consensus 1 ~l~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~-~~~~~L~~L~l~~ 79 (347)
++++|+++++.+..++. +..+++|++|++++|.++ .++. +. .+++|++|++++|.++.++. ..+++|++|++++
T Consensus 45 ~L~~L~l~~~~i~~~~~-~~~~~~L~~L~l~~n~i~-~~~~-~~--~l~~L~~L~L~~n~i~~~~~~~~l~~L~~L~l~~ 119 (347)
T 4fmz_A 45 SITKLVVAGEKVASIQG-IEYLTNLEYLNLNGNQIT-DISP-LS--NLVKLTNLYIGTNKITDISALQNLTNLRELYLNE 119 (347)
T ss_dssp TCSEEECCSSCCCCCTT-GGGCTTCCEEECCSSCCC-CCGG-GT--TCTTCCEEECCSSCCCCCGGGTTCTTCSEEECTT
T ss_pred cccEEEEeCCccccchh-hhhcCCccEEEccCCccc-cchh-hh--cCCcCCEEEccCCcccCchHHcCCCcCCEEECcC
Confidence 47899999999998876 899999999999999998 4554 44 55999999999999998875 7789999999999
Q ss_pred CCCCccCC-CCCCCccEEEcccCcccccCCccccCCCCccEEEcccCcccccCCcccCCccccEEECCCCccccccCccC
Q 040206 80 NLLQGSLP-DLPPHMVQLLISNNSLTGEIPSSFCNLSSIQYLNLSNNSLSGQIPQCLGNSTLETLDLGMNNFQGSIPQTN 158 (347)
Q Consensus 80 ~~~~~~~~-~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~ 158 (347)
|.+..... ..+++|++|++++|..... ...+..+++|++|++++|.+....+ ...+++|++|++++|.+.... . +
T Consensus 120 n~i~~~~~~~~l~~L~~L~l~~n~~~~~-~~~~~~l~~L~~L~l~~~~~~~~~~-~~~l~~L~~L~l~~n~l~~~~-~-~ 195 (347)
T 4fmz_A 120 DNISDISPLANLTKMYSLNLGANHNLSD-LSPLSNMTGLNYLTVTESKVKDVTP-IANLTDLYSLSLNYNQIEDIS-P-L 195 (347)
T ss_dssp SCCCCCGGGTTCTTCCEEECTTCTTCCC-CGGGTTCTTCCEEECCSSCCCCCGG-GGGCTTCSEEECTTSCCCCCG-G-G
T ss_pred CcccCchhhccCCceeEEECCCCCCccc-ccchhhCCCCcEEEecCCCcCCchh-hccCCCCCEEEccCCcccccc-c-c
Confidence 99886543 3458999999999965533 3448899999999999998875544 556789999999999887433 2 7
Q ss_pred CCCCCccEEEccCCcccCCCccccccCCCCcEEEccCCcccCCCCccccCCCCCCeEEecCCccccCcCccccccCCcEE
Q 040206 159 AKGCNLTSLRLSGNHLEGPLPPSLINCVNLQFLDVGNNNLSGPIPECLGNSTRLSFLDVGNNSLSGPIPECLANSTLEIL 238 (347)
Q Consensus 159 ~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L 238 (347)
..+++|+.+++++|.+....+ +..+++|++|++++|.+.+..+ +..+++|++|++++|.+++. +.....++|+.|
T Consensus 196 ~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L 270 (347)
T 4fmz_A 196 ASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQISDI-NAVKDLTKLKML 270 (347)
T ss_dssp GGCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCC-GGGTTCTTCCEE
T ss_pred cCCCccceeecccCCCCCCch--hhcCCcCCEEEccCCccCCCcc--hhcCCCCCEEECCCCccCCC-hhHhcCCCcCEE
Confidence 788999999999999875433 8889999999999999985443 88999999999999998854 444455899999
Q ss_pred EcccCcccccCChhhhccccccCCCcCccCCCCCcEEEccCCccCCccchhhhhccCCCEEEcccceeecccCCccccce
Q 040206 239 DMRMNKFSGSLPQNICKKLCFGPLPPSLVNCQYLEVLDVGNNQIDDTFLYWLDVLLQLQVLILRSNRFWGPIGKLRSRWS 318 (347)
Q Consensus 239 ~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~l~L~~n~~~~~~~~~~~~~~ 318 (347)
++++|.+++ + ..+..+++|++|++++|.+.+..+..+..+++|+.|++++|++++..| +..+.
T Consensus 271 ~l~~n~l~~--------------~-~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~--~~~l~ 333 (347)
T 4fmz_A 271 NVGSNQISD--------------I-SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--LASLS 333 (347)
T ss_dssp ECCSSCCCC--------------C-GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG--GGGCT
T ss_pred EccCCccCC--------------C-hhhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccccccC--hhhhh
Confidence 999999884 3 347789999999999999998888889999999999999999988665 44444
Q ss_pred ee
Q 040206 319 GH 320 (347)
Q Consensus 319 ~~ 320 (347)
.+
T Consensus 334 ~L 335 (347)
T 4fmz_A 334 KM 335 (347)
T ss_dssp TC
T ss_pred cc
Confidence 33
No 11
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=100.00 E-value=1.9e-31 Score=237.08 Aligned_cols=284 Identities=25% Similarity=0.219 Sum_probs=220.5
Q ss_pred CceEEEecCCCCCCCCh-hhhcCCCccEEeccCCcccccCChhhhhcCCCcccEEEcCCCcCCCCCC---CCCCCCcEEE
Q 040206 1 KTIKTQVKTCNISEFPD-ILRTQHQLEWLDLSKNQIRGRIPSWMWDIGVHTLQFLILSQNVLTSIDH---LPWKNLQYLT 76 (347)
Q Consensus 1 ~l~~l~l~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~---~~~~~L~~L~ 76 (347)
+++.++++++.+..+|. .+.++++|++|++++|.+.+..+..+.. +++|++|++++|.++.++. ..+++|++|+
T Consensus 46 ~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~--l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 123 (390)
T 3o6n_A 46 NQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAY--AHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLV 123 (390)
T ss_dssp CCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTT--CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccC--CCCcCEEECCCCCCCcCCHHHhcCCCCCCEEE
Confidence 36789999999998886 5789999999999999998555556654 4999999999999988865 4678899999
Q ss_pred ccCCCCCccCCCC---CCCccEEEcccCcccccCCccccCCCCccEEEcccCcccccCCcccCCcc--------------
Q 040206 77 LDSNLLQGSLPDL---PPHMVQLLISNNSLTGEIPSSFCNLSSIQYLNLSNNSLSGQIPQCLGNST-------------- 139 (347)
Q Consensus 77 l~~~~~~~~~~~~---~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~-------------- 139 (347)
+++|.+....... +++|++|++++|.+....+..+..+++|++|++++|.+..... ...++
T Consensus 124 L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~--~~l~~L~~L~l~~n~l~~~ 201 (390)
T 3o6n_A 124 LERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDL--SLIPSLFHANVSYNLLSTL 201 (390)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBCCG--GGCTTCSEEECCSSCCSEE
T ss_pred CCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCcccc--ccccccceeeccccccccc
Confidence 9999998766543 5899999999999987778889999999999999998875432 22334
Q ss_pred -----ccEEECCCCccccccCccCCCCCCccEEEccCCcccCCCccccccCCCCcEEEccCCcccCCCCccccCCCCCCe
Q 040206 140 -----LETLDLGMNNFQGSIPQTNAKGCNLTSLRLSGNHLEGPLPPSLINCVNLQFLDVGNNNLSGPIPECLGNSTRLSF 214 (347)
Q Consensus 140 -----L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~ 214 (347)
|+.|++++|.+... +. ...++|++|++++|.++.. ..+..+++|++|++++|.+.+..+..+..+++|+.
T Consensus 202 ~~~~~L~~L~l~~n~l~~~-~~--~~~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~ 276 (390)
T 3o6n_A 202 AIPIAVEELDASHNSINVV-RG--PVNVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLER 276 (390)
T ss_dssp ECCSSCSEEECCSSCCCEE-EC--CCCSSCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCE
T ss_pred CCCCcceEEECCCCeeeec-cc--cccccccEEECCCCCCccc--HHHcCCCCccEEECCCCcCCCcChhHccccccCCE
Confidence 45555555554422 22 1235788888888887643 56788888999999988888777788888888999
Q ss_pred EEecCCccccCcCccccccCCcEEEcccCcccccCChhhhccccccCCCcCccCCCCCcEEEccCCccCCccchhhhhcc
Q 040206 215 LDVGNNSLSGPIPECLANSTLEILDMRMNKFSGSLPQNICKKLCFGPLPPSLVNCQYLEVLDVGNNQIDDTFLYWLDVLL 294 (347)
Q Consensus 215 L~l~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~ 294 (347)
|++++|.+++........++|+.|++++|.+. .+|..+..+++|++|++++|.+++.. +..++
T Consensus 277 L~L~~n~l~~~~~~~~~l~~L~~L~L~~n~l~--------------~~~~~~~~l~~L~~L~L~~N~i~~~~---~~~~~ 339 (390)
T 3o6n_A 277 LYISNNRLVALNLYGQPIPTLKVLDLSHNHLL--------------HVERNQPQFDRLENLYLDHNSIVTLK---LSTHH 339 (390)
T ss_dssp EECCSSCCCEEECSSSCCTTCCEEECCSSCCC--------------CCGGGHHHHTTCSEEECCSSCCCCCC---CCTTC
T ss_pred EECCCCcCcccCcccCCCCCCCEEECCCCcce--------------ecCccccccCcCCEEECCCCccceeC---chhhc
Confidence 99988888765444444578899999988887 34555677888999999999887653 56778
Q ss_pred CCCEEEcccceeeccc
Q 040206 295 QLQVLILRSNRFWGPI 310 (347)
Q Consensus 295 ~L~~l~L~~n~~~~~~ 310 (347)
+|+.|++++|++.+..
T Consensus 340 ~L~~L~l~~N~~~~~~ 355 (390)
T 3o6n_A 340 TLKNLTLSHNDWDCNS 355 (390)
T ss_dssp CCSEEECCSSCEEHHH
T ss_pred cCCEEEcCCCCccchh
Confidence 8999999999988753
No 12
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=100.00 E-value=1.3e-31 Score=244.56 Aligned_cols=306 Identities=18% Similarity=0.133 Sum_probs=257.6
Q ss_pred eEEEecCCCCCCCChhhhcCCCccEEeccCCcccccCChhhhhcCCCcccEEEcCCCcCCCCCC---CCCCCCcEEEccC
Q 040206 3 IKTQVKTCNISEFPDILRTQHQLEWLDLSKNQIRGRIPSWMWDIGVHTLQFLILSQNVLTSIDH---LPWKNLQYLTLDS 79 (347)
Q Consensus 3 ~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~---~~~~~L~~L~l~~ 79 (347)
+.++.++..++.+|..+. ++++.|++++|.+++..+..+.. +++|++|++++|.++.+.. ..+++|++|++++
T Consensus 14 ~~v~c~~~~l~~ip~~~~--~~l~~L~L~~n~l~~~~~~~~~~--l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~ 89 (477)
T 2id5_A 14 RAVLCHRKRFVAVPEGIP--TETRLLDLGKNRIKTLNQDEFAS--FPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRS 89 (477)
T ss_dssp TEEECCSCCCSSCCSCCC--TTCSEEECCSSCCCEECTTTTTT--CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CEEEeCCCCcCcCCCCCC--CCCcEEECCCCccceECHhHccC--CCCCCEEECCCCccCEeChhhhhCCccCCEEECCC
Confidence 467788888999998664 68999999999999666666764 4999999999999998855 5678999999999
Q ss_pred CCCCccCCCC---CCCccEEEcccCcccccCCccccCCCCccEEEcccCcccccCCccc-CCccccEEECCCCccccccC
Q 040206 80 NLLQGSLPDL---PPHMVQLLISNNSLTGEIPSSFCNLSSIQYLNLSNNSLSGQIPQCL-GNSTLETLDLGMNNFQGSIP 155 (347)
Q Consensus 80 ~~~~~~~~~~---~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~~ 155 (347)
|.+....... +++|++|++++|.+....+..+..+++|+.|++++|.+....+..+ .+++|++|++++|.+....+
T Consensus 90 n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 169 (477)
T 2id5_A 90 NRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPT 169 (477)
T ss_dssp SCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCH
T ss_pred CcCCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccCh
Confidence 9998766543 4899999999999998888899999999999999999987766555 56799999999999886666
Q ss_pred ccCCCCCCccEEEccCCcccCCCccccccCCCCcEEEccCCcccCCCCccccCCCCCCeEEecCCccccCcCcccc-ccC
Q 040206 156 QTNAKGCNLTSLRLSGNHLEGPLPPSLINCVNLQFLDVGNNNLSGPIPECLGNSTRLSFLDVGNNSLSGPIPECLA-NST 234 (347)
Q Consensus 156 ~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~-~~~ 234 (347)
..+..+++|+.|++++|.+....+..+..+++|+.|++++|...+..+.......+|+.|++++|.++......+. .++
T Consensus 170 ~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~ 249 (477)
T 2id5_A 170 EALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVY 249 (477)
T ss_dssp HHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTT
T ss_pred hHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccccCHHHhcCccc
Confidence 6788999999999999999877777889999999999999987666666666667999999999999865544333 489
Q ss_pred CcEEEcccCcccccCChhhhccccccCCCcCccCCCCCcEEEccCCccCCccchhhhhccCCCEEEcccceeecccCCcc
Q 040206 235 LEILDMRMNKFSGSLPQNICKKLCFGPLPPSLVNCQYLEVLDVGNNQIDDTFLYWLDVLLQLQVLILRSNRFWGPIGKLR 314 (347)
Q Consensus 235 L~~L~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~l~L~~n~~~~~~~~~~ 314 (347)
|+.|++++|.+.+. .+..+..+++|++|++++|.+.+..+..+..+++|+.|++++|.+++..+..+
T Consensus 250 L~~L~Ls~n~l~~~-------------~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~ 316 (477)
T 2id5_A 250 LRFLNLSYNPISTI-------------EGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVF 316 (477)
T ss_dssp CCEEECCSSCCCEE-------------CTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGB
T ss_pred cCeeECCCCcCCcc-------------ChhhccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHc
Confidence 99999999999853 23467889999999999999998888889999999999999999998666666
Q ss_pred ccceeeeeeEe
Q 040206 315 SRWSGHFIVRT 325 (347)
Q Consensus 315 ~~~~~~~~~~~ 325 (347)
.....+..+..
T Consensus 317 ~~l~~L~~L~l 327 (477)
T 2id5_A 317 HSVGNLETLIL 327 (477)
T ss_dssp SCGGGCCEEEC
T ss_pred CCCcccCEEEc
Confidence 66665555443
No 13
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=100.00 E-value=7.1e-32 Score=244.86 Aligned_cols=306 Identities=20% Similarity=0.217 Sum_probs=235.9
Q ss_pred eEEEecCCCCCCCChhhhcCCCccEEeccCCcccccCChhhhhcCCCcccEEEcCCCcCC-CCCC---CCCCCCcEEEcc
Q 040206 3 IKTQVKTCNISEFPDILRTQHQLEWLDLSKNQIRGRIPSWMWDIGVHTLQFLILSQNVLT-SIDH---LPWKNLQYLTLD 78 (347)
Q Consensus 3 ~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~-~~~~---~~~~~L~~L~l~ 78 (347)
+.++.+++.++.+|. +. ++|++|++++|.+.+..+..+..+ ++|++|++++|.+. .++. ..+++|++|+++
T Consensus 13 ~~~~c~~~~l~~lp~-l~--~~l~~L~Ls~n~i~~~~~~~~~~l--~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls 87 (455)
T 3v47_A 13 YNAICINRGLHQVPE-LP--AHVNYVDLSLNSIAELNETSFSRL--QDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLD 87 (455)
T ss_dssp TEEECCSSCCSSCCC-CC--TTCCEEECCSSCCCEECTTTTSSC--TTCCEEECCCCSTTCEECTTTTTTCTTCCEEECT
T ss_pred cccCcCCCCcccCCC-CC--CccCEEEecCCccCcCChhHhccC--ccccEEECcCCcccceECcccccccccCCEEeCC
Confidence 356778888999997 33 899999999999997667777654 99999999999876 3433 667999999999
Q ss_pred CCCCCccCCCC---CCCccEEEcccCcccccCCc--cccCCCCccEEEcccCcccccCCcc--cCCccccEEECCCCccc
Q 040206 79 SNLLQGSLPDL---PPHMVQLLISNNSLTGEIPS--SFCNLSSIQYLNLSNNSLSGQIPQC--LGNSTLETLDLGMNNFQ 151 (347)
Q Consensus 79 ~~~~~~~~~~~---~~~L~~L~l~~~~~~~~~~~--~~~~l~~L~~L~l~~~~~~~~~~~~--~~~~~L~~L~l~~~~~~ 151 (347)
+|.+....+.. +++|++|++++|.+.+..+. .+..+++|++|++++|.+....+.. ..+++|++|++++|.+.
T Consensus 88 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~ 167 (455)
T 3v47_A 88 YNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVK 167 (455)
T ss_dssp TCTTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBS
T ss_pred CCccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCccc
Confidence 99998765443 48999999999999864433 4889999999999999998776653 36789999999999987
Q ss_pred cccCccCCCC----------------------------------CCccEEEccCCcccCCCccccc--------------
Q 040206 152 GSIPQTNAKG----------------------------------CNLTSLRLSGNHLEGPLPPSLI-------------- 183 (347)
Q Consensus 152 ~~~~~~~~~~----------------------------------~~L~~L~l~~~~~~~~~~~~l~-------------- 183 (347)
...+..+..+ ++|++|++++|.++...+..+.
T Consensus 168 ~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~ 247 (455)
T 3v47_A 168 SICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILS 247 (455)
T ss_dssp CCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECT
T ss_pred ccChhhhhccccccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeec
Confidence 6655544433 5677777777765432221111
Q ss_pred -------------------------cCCCCcEEEccCCcccCCCCccccCCCCCCeEEecCCccccCcCcccc-ccCCcE
Q 040206 184 -------------------------NCVNLQFLDVGNNNLSGPIPECLGNSTRLSFLDVGNNSLSGPIPECLA-NSTLEI 237 (347)
Q Consensus 184 -------------------------~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~-~~~L~~ 237 (347)
..++|+.|++++|.+.+..+..+..+++|+.|++++|.+.+..+..+. .++|+.
T Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~ 327 (455)
T 3v47_A 248 NSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLK 327 (455)
T ss_dssp TCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCE
T ss_pred cccccccccchhhhccCcccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCE
Confidence 125788888888888777777888888888888888888876554443 478888
Q ss_pred EEcccCcccccCChhhhccccccCCCcCccCCCCCcEEEccCCccCCccchhhhhccCCCEEEcccceeecccCCccccc
Q 040206 238 LDMRMNKFSGSLPQNICKKLCFGPLPPSLVNCQYLEVLDVGNNQIDDTFLYWLDVLLQLQVLILRSNRFWGPIGKLRSRW 317 (347)
Q Consensus 238 L~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~l~L~~n~~~~~~~~~~~~~ 317 (347)
|++++|.+.+. .+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+...
T Consensus 328 L~Ls~N~l~~~-------------~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l 394 (455)
T 3v47_A 328 LNLSQNFLGSI-------------DSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRL 394 (455)
T ss_dssp EECCSSCCCEE-------------CGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTC
T ss_pred EECCCCccCCc-------------ChhHhcCcccCCEEECCCCcccccChhhccccccccEEECCCCccccCCHhHhccC
Confidence 88888888753 23457788999999999999988878888999999999999999998666666666
Q ss_pred eeeeeeEee
Q 040206 318 SGHFIVRTV 326 (347)
Q Consensus 318 ~~~~~~~~~ 326 (347)
..+..+...
T Consensus 395 ~~L~~L~l~ 403 (455)
T 3v47_A 395 TSLQKIWLH 403 (455)
T ss_dssp TTCCEEECC
T ss_pred CcccEEEcc
Confidence 666555443
No 14
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=100.00 E-value=2.2e-31 Score=247.73 Aligned_cols=306 Identities=21% Similarity=0.175 Sum_probs=202.5
Q ss_pred CceEEEecCCCCCCCC-hhhhcCCCccEEeccCCcccccCChhhhhcCCCcccEEEcCCCcCCCCCCCCCCCCcEEEccC
Q 040206 1 KTIKTQVKTCNISEFP-DILRTQHQLEWLDLSKNQIRGRIPSWMWDIGVHTLQFLILSQNVLTSIDHLPWKNLQYLTLDS 79 (347)
Q Consensus 1 ~l~~l~l~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~L~~L~l~~ 79 (347)
++++|++++|.+..++ .+|.++++|++|++++|.+++..|..+..+ ++|++|++++|.++.++...+++|++|++++
T Consensus 53 ~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l--~~L~~L~Ls~N~l~~lp~~~l~~L~~L~Ls~ 130 (562)
T 3a79_B 53 RTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFN--QDLEYLDVSHNRLQNISCCPMASLRHLDLSF 130 (562)
T ss_dssp TCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTC--TTCCEEECTTSCCCEECSCCCTTCSEEECCS
T ss_pred CcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCC--CCCCEEECCCCcCCccCccccccCCEEECCC
Confidence 3678888888888666 588888888888888888886666666544 8888888888888888777788888888888
Q ss_pred CCCCccCC----CCCCCccEEEcccCcccccCCccccCCCCc--cEEEcccCcc--cccCCcccC---------------
Q 040206 80 NLLQGSLP----DLPPHMVQLLISNNSLTGEIPSSFCNLSSI--QYLNLSNNSL--SGQIPQCLG--------------- 136 (347)
Q Consensus 80 ~~~~~~~~----~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L--~~L~l~~~~~--~~~~~~~~~--------------- 136 (347)
|.+..... ..+++|++|++++|.+... .+..+++| +.|++++|.+ ....+..+.
T Consensus 131 N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~---~~~~l~~L~L~~L~L~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~ 207 (562)
T 3a79_B 131 NDFDVLPVCKEFGNLTKLTFLGLSAAKFRQL---DLLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNS 207 (562)
T ss_dssp SCCSBCCCCGGGGGCTTCCEEEEECSBCCTT---TTGGGTTSCEEEEEEEESSCCCCSSSCCEEEECCEEEEEEEECSSS
T ss_pred CCccccCchHhhcccCcccEEecCCCccccC---chhhhhhceeeEEEeecccccccccCcccccccCcceEEEEecCcc
Confidence 88876331 2247788888888776642 23333333 6666655544 211111100
Q ss_pred -------------------------------------------------------------------CccccEEECCCCc
Q 040206 137 -------------------------------------------------------------------NSTLETLDLGMNN 149 (347)
Q Consensus 137 -------------------------------------------------------------------~~~L~~L~l~~~~ 149 (347)
..+|++|++++|.
T Consensus 208 ~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~ 287 (562)
T 3a79_B 208 LFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLT 287 (562)
T ss_dssp CCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEECHHHHHHHHHHHTTSSEEEEEEEEEE
T ss_pred chhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEecCCcCcHHHHHHHHHhhhcccccEEEEeccE
Confidence 0134444444444
Q ss_pred cccccCccC-----------------------------------------------------CCCCCccEEEccCCcccC
Q 040206 150 FQGSIPQTN-----------------------------------------------------AKGCNLTSLRLSGNHLEG 176 (347)
Q Consensus 150 ~~~~~~~~~-----------------------------------------------------~~~~~L~~L~l~~~~~~~ 176 (347)
+.+..|..+ ..+++|++|++++|.++.
T Consensus 288 l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~~~p~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~l~~L~~L~l~~n~l~~ 367 (562)
T 3a79_B 288 ITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMVCPPSPSSFTFLNFTQNVFTD 367 (562)
T ss_dssp ECSCCCCCCCCCCSCSCCEEEEEEEEECCCSSCHHHHHHHHHTCCCSEEEEESSCCCCCCCCSSCCCCCEEECCSSCCCT
T ss_pred eeccccchhhhcccccchheehhhcccceeecChhhhhhhhccCcceEEEccCCCcccccCccCCCCceEEECCCCcccc
Confidence 332233222 455677777777777776
Q ss_pred CCccccccCCCCcEEEccCCcccCC--CCccccCCCCCCeEEecCCccccCcC-ccc-cccCCcEEEcccCcccccCChh
Q 040206 177 PLPPSLINCVNLQFLDVGNNNLSGP--IPECLGNSTRLSFLDVGNNSLSGPIP-ECL-ANSTLEILDMRMNKFSGSLPQN 252 (347)
Q Consensus 177 ~~~~~l~~~~~L~~L~l~~n~~~~~--~~~~l~~~~~L~~L~l~~~~~~~~~~-~~~-~~~~L~~L~L~~~~~~~~~~~~ 252 (347)
..+..+..+++|+.|++++|.+.+. .|..+..+++|+.|++++|.+++..+ ..+ ..++|+.|++++|.+++.+|..
T Consensus 368 ~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~ 447 (562)
T 3a79_B 368 SVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRC 447 (562)
T ss_dssp TTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTCCEEECCSSCCCGGGGSS
T ss_pred chhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCcccCCEEECCCCCCCcchhhh
Confidence 6666777777777777777777642 23456677777777777777765233 222 2266777777777776555443
Q ss_pred hh-cc-------ccccCCCcCccCCCCCcEEEccCCccCCccchhhhhccCCCEEEcccceeecccC
Q 040206 253 IC-KK-------LCFGPLPPSLVNCQYLEVLDVGNNQIDDTFLYWLDVLLQLQVLILRSNRFWGPIG 311 (347)
Q Consensus 253 ~~-~~-------~~~~~l~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~l~L~~n~~~~~~~ 311 (347)
+. .. .....+|..+..+++|++|++++|.++..++..+..+++|+.|++++|++.+.++
T Consensus 448 l~~~L~~L~L~~N~l~~ip~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N~~~c~c~ 514 (562)
T 3a79_B 448 LPPKVKVLDLHNNRIMSIPKDVTHLQALQELNVASNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCP 514 (562)
T ss_dssp CCTTCSEEECCSSCCCCCCTTTTSSCCCSEEECCSSCCCCCCTTSTTTCTTCCCEECCSCCBCCCHH
T ss_pred hcCcCCEEECCCCcCcccChhhcCCCCCCEEECCCCCCCCCCHHHHhcCCCCCEEEecCCCcCCCcc
Confidence 32 11 2334677777788999999999999987555558889999999999999988765
No 15
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=2e-31 Score=250.43 Aligned_cols=126 Identities=21% Similarity=0.275 Sum_probs=81.0
Q ss_pred ceEEEecCCCCCCCCh-hhhcCCCccEEeccCCcccccCChhhhhcCCCcccEEEcCCCcCCCCCC---CCCCCCcEEEc
Q 040206 2 TIKTQVKTCNISEFPD-ILRTQHQLEWLDLSKNQIRGRIPSWMWDIGVHTLQFLILSQNVLTSIDH---LPWKNLQYLTL 77 (347)
Q Consensus 2 l~~l~l~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~---~~~~~L~~L~l 77 (347)
+++|++++|.++.++. +|.++++|++|++++|.+++..|..+.. +++|++|++++|.++.+.+ ..+++|++|++
T Consensus 34 l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~--l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L 111 (606)
T 3vq2_A 34 TKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHG--LHHLSNLILTGNPIQSFSPGSFSGLTSLENLVA 111 (606)
T ss_dssp CCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTT--CTTCCEEECTTCCCCCCCTTSSTTCTTCCEEEC
T ss_pred cCEEECCCCCcCEeChhhccCCccCcEEeCCCCcccccCHHHhhc--hhhcCEeECCCCcccccChhhcCCcccCCEEEc
Confidence 5677777777774443 6777777777777777777544555543 3777777777777766643 45667777777
Q ss_pred cCCCCCccCC---CCCCCccEEEcccCcccc-cCCccccCCCCccEEEcccCcccc
Q 040206 78 DSNLLQGSLP---DLPPHMVQLLISNNSLTG-EIPSSFCNLSSIQYLNLSNNSLSG 129 (347)
Q Consensus 78 ~~~~~~~~~~---~~~~~L~~L~l~~~~~~~-~~~~~~~~l~~L~~L~l~~~~~~~ 129 (347)
++|.+....+ ..+++|++|++++|.+.. ..|..++++++|++|++++|.+..
T Consensus 112 ~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~ 167 (606)
T 3vq2_A 112 VETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQT 167 (606)
T ss_dssp TTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCE
T ss_pred cCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCccee
Confidence 7777654432 223667777777776654 345666666666666666665543
No 16
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=100.00 E-value=9.9e-31 Score=228.94 Aligned_cols=277 Identities=21% Similarity=0.255 Sum_probs=231.3
Q ss_pred CceEEEecCCCCCCCChhhhcCCCccEEeccCCcccccCChhhhhcCCCcccEEEcCCCcCCCCCC-CCCCCCcEEEccC
Q 040206 1 KTIKTQVKTCNISEFPDILRTQHQLEWLDLSKNQIRGRIPSWMWDIGVHTLQFLILSQNVLTSIDH-LPWKNLQYLTLDS 79 (347)
Q Consensus 1 ~l~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~-~~~~~L~~L~l~~ 79 (347)
+|++|++++|.++.++. +.++++|++|++++|.+++ ++ .+. .+++|++|++++|.++.++. ..+++|++|++++
T Consensus 67 ~L~~L~l~~n~i~~~~~-~~~l~~L~~L~L~~n~i~~-~~-~~~--~l~~L~~L~l~~n~i~~~~~~~~l~~L~~L~l~~ 141 (347)
T 4fmz_A 67 NLEYLNLNGNQITDISP-LSNLVKLTNLYIGTNKITD-IS-ALQ--NLTNLRELYLNEDNISDISPLANLTKMYSLNLGA 141 (347)
T ss_dssp TCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCC-CG-GGT--TCTTCSEEECTTSCCCCCGGGTTCTTCCEEECTT
T ss_pred CccEEEccCCccccchh-hhcCCcCCEEEccCCcccC-ch-HHc--CCCcCCEEECcCCcccCchhhccCCceeEEECCC
Confidence 47899999999998887 9999999999999999984 44 444 45999999999999998876 7789999999999
Q ss_pred CCCCccCC--CCCCCccEEEcccCcccccCCccccCCCCccEEEcccCcccccCCcccCCccccEEECCCCccccccCcc
Q 040206 80 NLLQGSLP--DLPPHMVQLLISNNSLTGEIPSSFCNLSSIQYLNLSNNSLSGQIPQCLGNSTLETLDLGMNNFQGSIPQT 157 (347)
Q Consensus 80 ~~~~~~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~ 157 (347)
|....... ..+++|++|++++|.+....+ +..+++|+.|++++|.+....+ ...+++|+.+++++|.+....+
T Consensus 142 n~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~--~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~~-- 216 (347)
T 4fmz_A 142 NHNLSDLSPLSNMTGLNYLTVTESKVKDVTP--IANLTDLYSLSLNYNQIEDISP-LASLTSLHYFTAYVNQITDITP-- 216 (347)
T ss_dssp CTTCCCCGGGTTCTTCCEEECCSSCCCCCGG--GGGCTTCSEEECTTSCCCCCGG-GGGCTTCCEEECCSSCCCCCGG--
T ss_pred CCCcccccchhhCCCCcEEEecCCCcCCchh--hccCCCCCEEEccCCccccccc-ccCCCccceeecccCCCCCCch--
Confidence 96554433 335899999999999885443 8899999999999999885544 5567899999999998874433
Q ss_pred CCCCCCccEEEccCCcccCCCccccccCCCCcEEEccCCcccCCCCccccCCCCCCeEEecCCccccCcCccccccCCcE
Q 040206 158 NAKGCNLTSLRLSGNHLEGPLPPSLINCVNLQFLDVGNNNLSGPIPECLGNSTRLSFLDVGNNSLSGPIPECLANSTLEI 237 (347)
Q Consensus 158 ~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~ 237 (347)
+..+++|++|++++|.++... . +..+++|++|++++|.+.+. ..+..+++|+.|++++|.+++. +.....++|+.
T Consensus 217 ~~~~~~L~~L~l~~n~l~~~~-~-~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~ 291 (347)
T 4fmz_A 217 VANMTRLNSLKIGNNKITDLS-P-LANLSQLTWLEIGTNQISDI--NAVKDLTKLKMLNVGSNQISDI-SVLNNLSQLNS 291 (347)
T ss_dssp GGGCTTCCEEECCSSCCCCCG-G-GTTCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCCC-GGGGGCTTCSE
T ss_pred hhcCCcCCEEEccCCccCCCc-c-hhcCCCCCEEECCCCccCCC--hhHhcCCCcCEEEccCCccCCC-hhhcCCCCCCE
Confidence 778899999999999998543 3 88999999999999999853 5688999999999999999865 44455589999
Q ss_pred EEcccCcccccCChhhhccccccCCCcCccCCCCCcEEEccCCccCCccchhhhhccCCCEEEcccceee
Q 040206 238 LDMRMNKFSGSLPQNICKKLCFGPLPPSLVNCQYLEVLDVGNNQIDDTFLYWLDVLLQLQVLILRSNRFW 307 (347)
Q Consensus 238 L~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~l~L~~n~~~ 307 (347)
|++++|.+.+..+. .+..+++|++|++++|.+++..+ +..+++|+.|++++|+++
T Consensus 292 L~L~~n~l~~~~~~-------------~l~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~N~i~ 346 (347)
T 4fmz_A 292 LFLNNNQLGNEDME-------------VIGGLTNLTTLFLSQNHITDIRP--LASLSKMDSADFANQVIK 346 (347)
T ss_dssp EECCSSCCCGGGHH-------------HHHTCTTCSEEECCSSSCCCCGG--GGGCTTCSEESSSCC---
T ss_pred EECcCCcCCCcChh-------------HhhccccCCEEEccCCccccccC--hhhhhccceeehhhhccc
Confidence 99999999865433 46788999999999999988666 789999999999999986
No 17
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.98 E-value=8.9e-31 Score=227.74 Aligned_cols=290 Identities=20% Similarity=0.247 Sum_probs=230.0
Q ss_pred ceEEEecCCCCCCCChhhhcCCCccEEeccCCcccccCChhhhhcCCCcccEEEcCCCcCCCCCC---CCCCCCcEEEcc
Q 040206 2 TIKTQVKTCNISEFPDILRTQHQLEWLDLSKNQIRGRIPSWMWDIGVHTLQFLILSQNVLTSIDH---LPWKNLQYLTLD 78 (347)
Q Consensus 2 l~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~---~~~~~L~~L~l~ 78 (347)
++.++++++.+..+|..+. ++|+.|++++|.+.+..+..+.. +++|++|++++|.++.+.. ..+++|++|+++
T Consensus 35 l~~l~~~~~~l~~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~--l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 110 (332)
T 2ft3_A 35 LRVVQCSDLGLKAVPKEIS--PDTTLLDLQNNDISELRKDDFKG--LQHLYALVLVNNKISKIHEKAFSPLRKLQKLYIS 110 (332)
T ss_dssp TTEEECCSSCCSSCCSCCC--TTCCEEECCSSCCCEECTTTTTT--CTTCCEEECCSSCCCEECGGGSTTCTTCCEEECC
T ss_pred CCEEECCCCCccccCCCCC--CCCeEEECCCCcCCccCHhHhhC--CCCCcEEECCCCccCccCHhHhhCcCCCCEEECC
Confidence 6788999999999997664 78999999999998555656654 4999999999999988754 567899999999
Q ss_pred CCCCCccCCCCCCCccEEEcccCcccccCCccccCCCCccEEEcccCcccc--cCCcccCCccccEEECCCCccccccCc
Q 040206 79 SNLLQGSLPDLPPHMVQLLISNNSLTGEIPSSFCNLSSIQYLNLSNNSLSG--QIPQCLGNSTLETLDLGMNNFQGSIPQ 156 (347)
Q Consensus 79 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~--~~~~~~~~~~L~~L~l~~~~~~~~~~~ 156 (347)
+|.+........++|++|++++|.+....+..+..+++|+.|++++|.+.. ..+..+...+|+.|++++|.+.. .|.
T Consensus 111 ~n~l~~l~~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~L~~L~l~~n~l~~-l~~ 189 (332)
T 2ft3_A 111 KNHLVEIPPNLPSSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLTG-IPK 189 (332)
T ss_dssp SSCCCSCCSSCCTTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSCCCSCCBCCSSBCSS-CCS
T ss_pred CCcCCccCccccccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCCccCEEECcCCCCCc-cCc
Confidence 999987777777899999999999997777778999999999999998853 44444444489999999998874 554
Q ss_pred cCCCCCCccEEEccCCcccCCCccccccCCCCcEEEccCCcccCCCCccccCCCCCCeEEecCCccccCcCccccccCCc
Q 040206 157 TNAKGCNLTSLRLSGNHLEGPLPPSLINCVNLQFLDVGNNNLSGPIPECLGNSTRLSFLDVGNNSLSGPIPECLANSTLE 236 (347)
Q Consensus 157 ~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~ 236 (347)
.+. ++|++|++++|.++...+..+..+++|+.|++++|.+.+..+..+..+++|+.|++++|.++.........++|+
T Consensus 190 ~~~--~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~L~ 267 (332)
T 2ft3_A 190 DLP--ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLSRVPAGLPDLKLLQ 267 (332)
T ss_dssp SSC--SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCCBCCTTGGGCTTCC
T ss_pred ccc--CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCeecChhhhcCccCC
Confidence 443 689999999999987777788999999999999999987777788999999999999999885544445558999
Q ss_pred EEEcccCcccccCChhhhccccccCCCcCccCCCCCcEEEccCCccC--CccchhhhhccCCCEEEcccce
Q 040206 237 ILDMRMNKFSGSLPQNICKKLCFGPLPPSLVNCQYLEVLDVGNNQID--DTFLYWLDVLLQLQVLILRSNR 305 (347)
Q Consensus 237 ~L~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~i~--~~~~~~~~~l~~L~~l~L~~n~ 305 (347)
.|++++|.+++..+..++.. ......+.|+.+++++|.+. +..+..+..+++|+.+++++|+
T Consensus 268 ~L~l~~N~l~~~~~~~~~~~-------~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 268 VVYLHTNNITKVGVNDFCPV-------GFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK 331 (332)
T ss_dssp EEECCSSCCCBCCTTSSSCS-------SCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC----
T ss_pred EEECCCCCCCccChhHcccc-------ccccccccccceEeecCcccccccCcccccccchhhhhhccccc
Confidence 99999999986544432110 01122567899999999886 5667778889999999999875
No 18
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.98 E-value=1.6e-30 Score=249.35 Aligned_cols=308 Identities=17% Similarity=0.200 Sum_probs=188.1
Q ss_pred CceEEEecCCCCCC------------------CChhhh--cCCCccEEeccCCcccccCChhhhhcCCCcccEEEcCCCc
Q 040206 1 KTIKTQVKTCNISE------------------FPDILR--TQHQLEWLDLSKNQIRGRIPSWMWDIGVHTLQFLILSQNV 60 (347)
Q Consensus 1 ~l~~l~l~~~~~~~------------------~~~~~~--~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 60 (347)
+|+.|+|++|.++. +|+.+. ++++|++|++++|.+.+.+|..+..+ ++|+.|++++|.
T Consensus 449 ~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L--~~L~~L~Ls~N~ 526 (876)
T 4ecn_A 449 KLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDL--PELQSLNIACNR 526 (876)
T ss_dssp TCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGC--SSCCEEECTTCT
T ss_pred CCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCC--CCCCEEECcCCC
Confidence 36777777777776 777655 77777777777777777777766654 777777777776
Q ss_pred -CCC--CCC---------CCCCCCcEEEccCCCCCccCC----CCCCCccEEEcccCcccccCCccccCCCCccEEEccc
Q 040206 61 -LTS--IDH---------LPWKNLQYLTLDSNLLQGSLP----DLPPHMVQLLISNNSLTGEIPSSFCNLSSIQYLNLSN 124 (347)
Q Consensus 61 -l~~--~~~---------~~~~~L~~L~l~~~~~~~~~~----~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~ 124 (347)
+++ ++. ..+++|++|++++|.+...+. ..+++|++|++++|.+. .+| .+..+++|+.|++++
T Consensus 527 ~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp-~~~~L~~L~~L~Ls~ 604 (876)
T 4ecn_A 527 GISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVR-HLE-AFGTNVKLTDLKLDY 604 (876)
T ss_dssp TSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCCBCCCHHHHTTCTTCCEEECTTSCCC-BCC-CCCTTSEESEEECCS
T ss_pred CcccccchHHHHhhhhcccccCCccEEEeeCCcCCccCChhhhhcCCCCCEEECCCCCcc-cch-hhcCCCcceEEECcC
Confidence 654 221 234577777777777763332 12467777777777776 455 666777777777777
Q ss_pred CcccccCCcccCCcc-ccEEECCCCccccccCccCCCCCC--ccEEEccCCcccCCCcc---ccc--cCCCCcEEEccCC
Q 040206 125 NSLSGQIPQCLGNST-LETLDLGMNNFQGSIPQTNAKGCN--LTSLRLSGNHLEGPLPP---SLI--NCVNLQFLDVGNN 196 (347)
Q Consensus 125 ~~~~~~~~~~~~~~~-L~~L~l~~~~~~~~~~~~~~~~~~--L~~L~l~~~~~~~~~~~---~l~--~~~~L~~L~l~~n 196 (347)
|.+...+.....+++ |+.|++++|.+. .+|..+..... |+.|++++|.+....|. .+. .+++|+.|++++|
T Consensus 605 N~l~~lp~~l~~l~~~L~~L~Ls~N~L~-~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N 683 (876)
T 4ecn_A 605 NQIEEIPEDFCAFTDQVEGLGFSHNKLK-YIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYN 683 (876)
T ss_dssp SCCSCCCTTSCEECTTCCEEECCSSCCC-SCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSS
T ss_pred CccccchHHHhhccccCCEEECcCCCCC-cCchhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCC
Confidence 776644434444555 777777777665 55555544433 66666666666533221 111 2235666666666
Q ss_pred cccCCCCccccCCCCCCeEEecCCccccCcCcccccc--------CCcEEEcccCcccccCChhhh--cc----------
Q 040206 197 NLSGPIPECLGNSTRLSFLDVGNNSLSGPIPECLANS--------TLEILDMRMNKFSGSLPQNIC--KK---------- 256 (347)
Q Consensus 197 ~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~--------~L~~L~L~~~~~~~~~~~~~~--~~---------- 256 (347)
.+....+..+..+++|+.|++++|.+.......+... +|+.|+|++|.++ .+|..+. ..
T Consensus 684 ~L~~lp~~~~~~l~~L~~L~Ls~N~L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~-~lp~~l~~~~l~~L~~L~Ls~ 762 (876)
T 4ecn_A 684 EIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLT-SLSDDFRATTLPYLSNMDVSY 762 (876)
T ss_dssp CCCSCCHHHHHTTCCCSEEECCSCCCSCCCTTSSSCTTSCCTTGGGCCEEECCSSCCC-CCCGGGSTTTCTTCCEEECCS
T ss_pred cCCccCHHHHccCCCCCEEECCCCcCCccChHHhccccccccccCCccEEECCCCCCc-cchHHhhhccCCCcCEEEeCC
Confidence 6653222223355666666666665553332222211 5666666666555 3444332 11
Q ss_pred ccccCCCcCccCCCCCcEEEccC------CccCCccchhhhhccCCCEEEcccceeecccCCccc
Q 040206 257 LCFGPLPPSLVNCQYLEVLDVGN------NQIDDTFLYWLDVLLQLQVLILRSNRFWGPIGKLRS 315 (347)
Q Consensus 257 ~~~~~l~~~~~~~~~L~~L~L~~------n~i~~~~~~~~~~l~~L~~l~L~~n~~~~~~~~~~~ 315 (347)
.....+|..+..+++|+.|+|++ |.+.+..|..+..+++|+.|+|++|++ +.+|..+.
T Consensus 763 N~L~~lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L-~~Ip~~l~ 826 (876)
T 4ecn_A 763 NCFSSFPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDI-RKVDEKLT 826 (876)
T ss_dssp SCCSSCCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCC
T ss_pred CCCCccchhhhcCCCCCEEECCCCCCcccccccccChHHHhcCCCCCEEECCCCCC-CccCHhhc
Confidence 12224666677788888888865 666667777778888888888888888 66776543
No 19
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.98 E-value=2.1e-30 Score=225.24 Aligned_cols=290 Identities=21% Similarity=0.218 Sum_probs=221.4
Q ss_pred ceEEEecCCCCCCCChhhhcCCCccEEeccCCcccccCChhhhhcCCCcccEEEcCCCcCCCCCC---CCCCCCcEEEcc
Q 040206 2 TIKTQVKTCNISEFPDILRTQHQLEWLDLSKNQIRGRIPSWMWDIGVHTLQFLILSQNVLTSIDH---LPWKNLQYLTLD 78 (347)
Q Consensus 2 l~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~---~~~~~L~~L~l~ 78 (347)
++.++++++.+..+|..+. ++++.|++++|++++..+..+.. +++|++|++++|.++.+.. ..+++|++|+++
T Consensus 33 l~~l~~~~~~l~~lp~~~~--~~l~~L~L~~n~i~~~~~~~~~~--l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls 108 (330)
T 1xku_A 33 LRVVQCSDLGLEKVPKDLP--PDTALLDLQNNKITEIKDGDFKN--LKNLHTLILINNKISKISPGAFAPLVKLERLYLS 108 (330)
T ss_dssp TTEEECTTSCCCSCCCSCC--TTCCEEECCSSCCCCBCTTTTTT--CTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECC
T ss_pred CeEEEecCCCccccCccCC--CCCeEEECCCCcCCEeChhhhcc--CCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECC
Confidence 5778888888888887554 78999999999998555545654 4999999999999888744 567889999999
Q ss_pred CCCCCccCCCCCCCccEEEcccCcccccCCccccCCCCccEEEcccCcccc--cCCc-ccCCccccEEECCCCccccccC
Q 040206 79 SNLLQGSLPDLPPHMVQLLISNNSLTGEIPSSFCNLSSIQYLNLSNNSLSG--QIPQ-CLGNSTLETLDLGMNNFQGSIP 155 (347)
Q Consensus 79 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~--~~~~-~~~~~~L~~L~l~~~~~~~~~~ 155 (347)
+|.+........++|++|++++|.+....+..+..+++|+.|++++|.+.. ..+. +..+++|+.|++++|.+. ..|
T Consensus 109 ~n~l~~l~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~-~l~ 187 (330)
T 1xku_A 109 KNQLKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT-TIP 187 (330)
T ss_dssp SSCCSBCCSSCCTTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCC-SCC
T ss_pred CCcCCccChhhcccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCccc-cCC
Confidence 999887777777899999999999987777778899999999999988753 2333 335678999999998887 445
Q ss_pred ccCCCCCCccEEEccCCcccCCCccccccCCCCcEEEccCCcccCCCCccccCCCCCCeEEecCCccccCcCccccccCC
Q 040206 156 QTNAKGCNLTSLRLSGNHLEGPLPPSLINCVNLQFLDVGNNNLSGPIPECLGNSTRLSFLDVGNNSLSGPIPECLANSTL 235 (347)
Q Consensus 156 ~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~L 235 (347)
..+. ++|++|++++|.++...+..+..+++|+.|++++|.+.+..+..+..+++|+.|++++|.++.........++|
T Consensus 188 ~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~L 265 (330)
T 1xku_A 188 QGLP--PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKYI 265 (330)
T ss_dssp SSCC--TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCSSCCTTTTTCSSC
T ss_pred cccc--ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCccCChhhccCCCc
Confidence 4433 78999999999888777778888899999999999888766677888889999999999888544444445889
Q ss_pred cEEEcccCcccccCChhhhccccccCCCcCccCCCCCcEEEccCCccCC--ccchhhhhccCCCEEEcccce
Q 040206 236 EILDMRMNKFSGSLPQNICKKLCFGPLPPSLVNCQYLEVLDVGNNQIDD--TFLYWLDVLLQLQVLILRSNR 305 (347)
Q Consensus 236 ~~L~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~i~~--~~~~~~~~l~~L~~l~L~~n~ 305 (347)
++|++++|.+++..+..++.. ......+.++.+++++|.+.. ..+..+..+++++.++|++|+
T Consensus 266 ~~L~l~~N~i~~~~~~~f~~~-------~~~~~~~~l~~l~l~~N~~~~~~i~~~~f~~~~~l~~l~L~~N~ 330 (330)
T 1xku_A 266 QVVYLHNNNISAIGSNDFCPP-------GYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNYK 330 (330)
T ss_dssp CEEECCSSCCCCCCTTSSSCS-------SCCTTSCCCSEEECCSSSSCGGGSCGGGGTTCCCGGGEEC----
T ss_pred CEEECCCCcCCccChhhcCCc-------ccccccccccceEeecCcccccccCccccccccceeEEEecccC
Confidence 999999998886544433110 111235678889999988753 455677778888899988874
No 20
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.98 E-value=8.6e-31 Score=246.09 Aligned_cols=148 Identities=16% Similarity=0.135 Sum_probs=83.8
Q ss_pred ccCCCCCCccEEEccCCcccCCCc-cccccCCCCcEEEccCCcccCCCCccccCCCCCCeEEecCCccccC-cCccc-cc
Q 040206 156 QTNAKGCNLTSLRLSGNHLEGPLP-PSLINCVNLQFLDVGNNNLSGPIPECLGNSTRLSFLDVGNNSLSGP-IPECL-AN 232 (347)
Q Consensus 156 ~~~~~~~~L~~L~l~~~~~~~~~~-~~l~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~~~~~~~-~~~~~-~~ 232 (347)
..+..+++|++|++++|.+....+ ..+..+++|+.|++++|.+.+..+..+..+++|+.|++++|.+.+. .+..+ ..
T Consensus 393 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l 472 (606)
T 3vq2_A 393 ANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANT 472 (606)
T ss_dssp CCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTC
T ss_pred hhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccC
Confidence 444455555555555555554433 3455556666666666666555555566666666666666665542 23322 23
Q ss_pred cCCcEEEcccCcccccCChhhhccccccCCCcCccCCCCCcEEEccCCccCCccchhhhhccCCCEEEcccceeecccCC
Q 040206 233 STLEILDMRMNKFSGSLPQNICKKLCFGPLPPSLVNCQYLEVLDVGNNQIDDTFLYWLDVLLQLQVLILRSNRFWGPIGK 312 (347)
Q Consensus 233 ~~L~~L~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~l~L~~n~~~~~~~~ 312 (347)
++|+.|++++|.+++.. |..+..+++|++|++++|.+++..+..+..+++|+.|++++|+++ .+|.
T Consensus 473 ~~L~~L~Ls~n~l~~~~-------------~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~p~ 538 (606)
T 3vq2_A 473 TNLTFLDLSKCQLEQIS-------------WGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIE-TSKG 538 (606)
T ss_dssp TTCCEEECTTSCCCEEC-------------TTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCC-CEES
T ss_pred CCCCEEECCCCcCCccC-------------hhhhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCcCc-ccCH
Confidence 56666666666666433 334556666666666666666655566666666666666666665 3444
Q ss_pred ccccc
Q 040206 313 LRSRW 317 (347)
Q Consensus 313 ~~~~~ 317 (347)
.+..+
T Consensus 539 ~~~~l 543 (606)
T 3vq2_A 539 ILQHF 543 (606)
T ss_dssp CGGGS
T ss_pred hHhhh
Confidence 44443
No 21
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.98 E-value=2.1e-30 Score=248.51 Aligned_cols=306 Identities=20% Similarity=0.254 Sum_probs=233.0
Q ss_pred CceEEEecCCCCC-CCChhhhcCCCccEEeccCCc-ccc-cCChhhhhc-----CCCcccEEEcCCCcCCCCCC----CC
Q 040206 1 KTIKTQVKTCNIS-EFPDILRTQHQLEWLDLSKNQ-IRG-RIPSWMWDI-----GVHTLQFLILSQNVLTSIDH----LP 68 (347)
Q Consensus 1 ~l~~l~l~~~~~~-~~~~~~~~~~~L~~L~l~~~~-~~~-~~~~~~~~~-----~~~~L~~L~l~~~~l~~~~~----~~ 68 (347)
+|++|+|++|.+. .+|..+.++++|+.|++++|+ +++ .+|..+..+ .+++|+.|++++|.++.++. ..
T Consensus 492 ~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~ip~~~~l~~ 571 (876)
T 4ecn_A 492 DLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQK 571 (876)
T ss_dssp TCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCCBCCCHHHHTT
T ss_pred CCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCCccCChhhhhc
Confidence 4789999999866 899999999999999999998 887 788877654 23599999999999998876 67
Q ss_pred CCCCcEEEccCCCCCccCCCC--CCCccEEEcccCcccccCCccccCCCC-ccEEEcccCcccccCCcccC-C--ccccE
Q 040206 69 WKNLQYLTLDSNLLQGSLPDL--PPHMVQLLISNNSLTGEIPSSFCNLSS-IQYLNLSNNSLSGQIPQCLG-N--STLET 142 (347)
Q Consensus 69 ~~~L~~L~l~~~~~~~~~~~~--~~~L~~L~l~~~~~~~~~~~~~~~l~~-L~~L~l~~~~~~~~~~~~~~-~--~~L~~ 142 (347)
+++|+.|++++|.+...+ .+ +++|++|++++|.+. .+|..+..+++ |+.|++++|.+... +..+. . ++|+.
T Consensus 572 L~~L~~L~Ls~N~l~~lp-~~~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~~l-p~~~~~~~~~~L~~ 648 (876)
T 4ecn_A 572 MVKLGLLDCVHNKVRHLE-AFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLKYI-PNIFNAKSVYVMGS 648 (876)
T ss_dssp CTTCCEEECTTSCCCBCC-CCCTTSEESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCCSC-CSCCCTTCSSCEEE
T ss_pred CCCCCEEECCCCCcccch-hhcCCCcceEEECcCCccc-cchHHHhhccccCCEEECcCCCCCcC-chhhhccccCCCCE
Confidence 899999999999998443 33 488999999999999 77878889998 99999999998844 44433 2 24999
Q ss_pred EECCCCccccccCccC---C--CCCCccEEEccCCcccCCCccccccCCCCcEEEccCCcccCCCCccccC--------C
Q 040206 143 LDLGMNNFQGSIPQTN---A--KGCNLTSLRLSGNHLEGPLPPSLINCVNLQFLDVGNNNLSGPIPECLGN--------S 209 (347)
Q Consensus 143 L~l~~~~~~~~~~~~~---~--~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~--------~ 209 (347)
|++++|.+.+..|... . ..++|+.|++++|.++......+..+++|+.|++++|.+. .+|..+.. +
T Consensus 649 L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~~~~~~~l~nl 727 (876)
T 4ecn_A 649 VDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMT-SIPENSLKPKDGNYKNT 727 (876)
T ss_dssp EECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCCCS-CCCTTSSSCTTSCCTTG
T ss_pred EECcCCcCCCccccchhhhccccCCCcCEEEccCCcCCccCHHHHccCCCCCEEECCCCcCC-ccChHHhcccccccccc
Confidence 9999998865444322 1 3357889999998888433333457788888888888887 34443322 2
Q ss_pred CCCCeEEecCCccccCcCccc--cccCCcEEEcccCcccccCChhhhcc-----------------ccccCCCcCccCCC
Q 040206 210 TRLSFLDVGNNSLSGPIPECL--ANSTLEILDMRMNKFSGSLPQNICKK-----------------LCFGPLPPSLVNCQ 270 (347)
Q Consensus 210 ~~L~~L~l~~~~~~~~~~~~~--~~~~L~~L~L~~~~~~~~~~~~~~~~-----------------~~~~~l~~~~~~~~ 270 (347)
++|+.|++++|.++....... ..++|+.|+|++|.+.+ +|..+... ...+.+|..+..++
T Consensus 728 ~~L~~L~Ls~N~L~~lp~~l~~~~l~~L~~L~Ls~N~L~~-lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~ 806 (876)
T 4ecn_A 728 YLLTTIDLRFNKLTSLSDDFRATTLPYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCP 806 (876)
T ss_dssp GGCCEEECCSSCCCCCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCS
T ss_pred CCccEEECCCCCCccchHHhhhccCCCcCEEEeCCCCCCc-cchhhhcCCCCCEEECCCCCCcccccccccChHHHhcCC
Confidence 378888888888884433333 45788888888888886 66555442 11456778899999
Q ss_pred CCcEEEccCCccCCccchhhhhccCCCEEEcccceeecccCCcc
Q 040206 271 YLEVLDVGNNQIDDTFLYWLDVLLQLQVLILRSNRFWGPIGKLR 314 (347)
Q Consensus 271 ~L~~L~L~~n~i~~~~~~~~~~l~~L~~l~L~~n~~~~~~~~~~ 314 (347)
+|+.|+|++|.+. ..|..+. ++|+.|+|++|++..--+..+
T Consensus 807 ~L~~L~Ls~N~L~-~Ip~~l~--~~L~~LdLs~N~l~~i~~~~~ 847 (876)
T 4ecn_A 807 SLIQLQIGSNDIR-KVDEKLT--PQLYILDIADNPNISIDVTSV 847 (876)
T ss_dssp SCCEEECCSSCCC-BCCSCCC--SSSCEEECCSCTTCEEECGGG
T ss_pred CCCEEECCCCCCC-ccCHhhc--CCCCEEECCCCCCCccChHHc
Confidence 9999999999995 4554443 699999999999876544443
No 22
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.98 E-value=1.1e-30 Score=244.38 Aligned_cols=283 Identities=25% Similarity=0.218 Sum_probs=226.1
Q ss_pred ceEEEecCCCCCCCCh-hhhcCCCccEEeccCCcccccCChhhhhcCCCcccEEEcCCCcCCCCCC---CCCCCCcEEEc
Q 040206 2 TIKTQVKTCNISEFPD-ILRTQHQLEWLDLSKNQIRGRIPSWMWDIGVHTLQFLILSQNVLTSIDH---LPWKNLQYLTL 77 (347)
Q Consensus 2 l~~l~l~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~---~~~~~L~~L~l 77 (347)
++.++++++.+..+|. .+.++++|++|++++|.+.+..+..+.. +++|++|++++|.++.++. ..+++|++|++
T Consensus 53 l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~--l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 130 (597)
T 3oja_B 53 QKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAY--AHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVL 130 (597)
T ss_dssp CSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTT--CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred ceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcC--CCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEe
Confidence 5788899999998875 6788999999999999998665656664 4999999999999988876 56789999999
Q ss_pred cCCCCCccCCCC---CCCccEEEcccCcccccCCccccCCCCccEEEcccCcccccCCcccCCcc---------------
Q 040206 78 DSNLLQGSLPDL---PPHMVQLLISNNSLTGEIPSSFCNLSSIQYLNLSNNSLSGQIPQCLGNST--------------- 139 (347)
Q Consensus 78 ~~~~~~~~~~~~---~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~--------------- 139 (347)
++|.+...+... +++|++|++++|.+....+..+..+++|++|++++|.+...... .+++
T Consensus 131 ~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~--~l~~L~~L~l~~n~l~~l~ 208 (597)
T 3oja_B 131 ERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLS--LIPSLFHANVSYNLLSTLA 208 (597)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCCGG--GCTTCSEEECCSSCCSEEE
T ss_pred eCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcChh--hhhhhhhhhcccCcccccc
Confidence 999998776544 58899999999999988888899999999999999988754322 2334
Q ss_pred ----ccEEECCCCccccccCccCCCCCCccEEEccCCcccCCCccccccCCCCcEEEccCCcccCCCCccccCCCCCCeE
Q 040206 140 ----LETLDLGMNNFQGSIPQTNAKGCNLTSLRLSGNHLEGPLPPSLINCVNLQFLDVGNNNLSGPIPECLGNSTRLSFL 215 (347)
Q Consensus 140 ----L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L 215 (347)
|+.|++++|.+....+. ..++|+.|++++|.++. +..+..+++|+.|++++|.+.+..|..+..+++|+.|
T Consensus 209 ~~~~L~~L~ls~n~l~~~~~~---~~~~L~~L~L~~n~l~~--~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 283 (597)
T 3oja_B 209 IPIAVEELDASHNSINVVRGP---VNVELTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERL 283 (597)
T ss_dssp CCTTCSEEECCSSCCCEEECS---CCSCCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEE
T ss_pred CCchhheeeccCCcccccccc---cCCCCCEEECCCCCCCC--ChhhccCCCCCEEECCCCccCCCCHHHhcCccCCCEE
Confidence 45555555554422221 13578888888888874 3678889999999999999988888899999999999
Q ss_pred EecCCccccCcCccccccCCcEEEcccCcccccCChhhhccccccCCCcCccCCCCCcEEEccCCccCCccchhhhhccC
Q 040206 216 DVGNNSLSGPIPECLANSTLEILDMRMNKFSGSLPQNICKKLCFGPLPPSLVNCQYLEVLDVGNNQIDDTFLYWLDVLLQ 295 (347)
Q Consensus 216 ~l~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~ 295 (347)
++++|.+++........++|+.|++++|.+. .+|..+..+++|+.|++++|.+.+.. +..+++
T Consensus 284 ~Ls~N~l~~l~~~~~~l~~L~~L~Ls~N~l~--------------~i~~~~~~l~~L~~L~L~~N~l~~~~---~~~~~~ 346 (597)
T 3oja_B 284 YISNNRLVALNLYGQPIPTLKVLDLSHNHLL--------------HVERNQPQFDRLENLYLDHNSIVTLK---LSTHHT 346 (597)
T ss_dssp ECTTSCCCEEECSSSCCTTCCEEECCSSCCC--------------CCGGGHHHHTTCSEEECCSSCCCCCC---CCTTCC
T ss_pred ECCCCCCCCCCcccccCCCCcEEECCCCCCC--------------ccCcccccCCCCCEEECCCCCCCCcC---hhhcCC
Confidence 9999998875544444589999999999988 35556778899999999999998653 567889
Q ss_pred CCEEEcccceeeccc
Q 040206 296 LQVLILRSNRFWGPI 310 (347)
Q Consensus 296 L~~l~L~~n~~~~~~ 310 (347)
|+.|++++|++.+..
T Consensus 347 L~~L~l~~N~~~~~~ 361 (597)
T 3oja_B 347 LKNLTLSHNDWDCNS 361 (597)
T ss_dssp CSEEECCSSCEEHHH
T ss_pred CCEEEeeCCCCCChh
Confidence 999999999998753
No 23
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.97 E-value=1.6e-30 Score=239.83 Aligned_cols=312 Identities=23% Similarity=0.214 Sum_probs=222.0
Q ss_pred eEEEecCCCCCCCChhhhcCCCccEEeccCCcccccCChhhhhcCCCcccEEEcCCCcCCCCCC---CCCCCCcEEEccC
Q 040206 3 IKTQVKTCNISEFPDILRTQHQLEWLDLSKNQIRGRIPSWMWDIGVHTLQFLILSQNVLTSIDH---LPWKNLQYLTLDS 79 (347)
Q Consensus 3 ~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~---~~~~~L~~L~l~~ 79 (347)
++++++++.++.+|..+. ++|++|++++|.+.+..+..+.. +++|++|++++|.++.+.+ ..+++|++|++++
T Consensus 3 ~~l~ls~n~l~~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~--l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~ 78 (520)
T 2z7x_B 3 FLVDRSKNGLIHVPKDLS--QKTTILNISQNYISELWTSDILS--LSKLRILIISHNRIQYLDISVFKFNQELEYLDLSH 78 (520)
T ss_dssp CEEECTTSCCSSCCCSCC--TTCSEEECCSSCCCCCCHHHHTT--CTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCS
T ss_pred ceEecCCCCccccccccc--ccccEEECCCCcccccChhhccc--cccccEEecCCCccCCcChHHhhcccCCCEEecCC
Confidence 689999999999998666 99999999999999655566664 4999999999999998854 6789999999999
Q ss_pred CCCCccCCCCCCCccEEEcccCccccc-CCccccCCCCccEEEcccCcccccCCcccCCccc--cEEECCCCcc--cccc
Q 040206 80 NLLQGSLPDLPPHMVQLLISNNSLTGE-IPSSFCNLSSIQYLNLSNNSLSGQIPQCLGNSTL--ETLDLGMNNF--QGSI 154 (347)
Q Consensus 80 ~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L--~~L~l~~~~~--~~~~ 154 (347)
|.+...+...+++|++|++++|.+... .|..++.+++|++|++++|.+... ....+++| +.|++++|.+ ....
T Consensus 79 N~l~~lp~~~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~~--~~~~l~~L~L~~L~l~~n~l~~~~~~ 156 (520)
T 2z7x_B 79 NKLVKISCHPTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEKS--SVLPIAHLNISKVLLVLGETYGEKED 156 (520)
T ss_dssp SCCCEEECCCCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCGG--GGGGGTTSCEEEEEEEECTTTTSSCC
T ss_pred CceeecCccccCCccEEeccCCccccccchhhhccCCcceEEEecCcccchh--hccccccceeeEEEeecccccccccc
Confidence 999976666679999999999999863 578999999999999999998752 23345566 9999999877 4444
Q ss_pred CccCCCCC------------------------------------------------------------------------
Q 040206 155 PQTNAKGC------------------------------------------------------------------------ 162 (347)
Q Consensus 155 ~~~~~~~~------------------------------------------------------------------------ 162 (347)
|..+..+.
T Consensus 157 ~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~ 236 (520)
T 2z7x_B 157 PEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNS 236 (520)
T ss_dssp TTTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHHGGGGCTTCCEEEEEEEEEEHHH
T ss_pred cccccccccceEEEEeccCcchhhhhhhhhhcccceeeccccccccccccceeecchhhhccccchhhccccccccCHHH
Confidence 44443321
Q ss_pred -----------CccEEEccCCcccCCCcccc-------------------------------------------------
Q 040206 163 -----------NLTSLRLSGNHLEGPLPPSL------------------------------------------------- 182 (347)
Q Consensus 163 -----------~L~~L~l~~~~~~~~~~~~l------------------------------------------------- 182 (347)
+|++|++++|.++...|..+
T Consensus 237 ~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~~~p~~~~~~~~~~~~L~~L~l~~n~l~~ 316 (520)
T 2z7x_B 237 FIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVH 316 (520)
T ss_dssp HHHHHHHHHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCCCSCTHHHHHHHHTCCCSEEEEESSCCCC
T ss_pred HHHHHHHhhhCcccEEEeecccccCccccchhhcccccCceeEeccccccceecchhhhhcccccCceeEEEcCCCcccc
Confidence 56667776666554344333
Q ss_pred ----ccCCCCcEEEccCCcccCCCCccccCCCCCCeEEecCCccccC--cCc-cccccCCcEEEcccCcccccCChhhh-
Q 040206 183 ----INCVNLQFLDVGNNNLSGPIPECLGNSTRLSFLDVGNNSLSGP--IPE-CLANSTLEILDMRMNKFSGSLPQNIC- 254 (347)
Q Consensus 183 ----~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~~~~~~~--~~~-~~~~~~L~~L~L~~~~~~~~~~~~~~- 254 (347)
..+++|++|++++|.+.+..|..+..+++|+.|++++|.+++. .+. ....++|+.|++++|.+.+.+|....
T Consensus 317 ~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~ 396 (520)
T 2z7x_B 317 MLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCS 396 (520)
T ss_dssp CCCCSSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCC
T ss_pred ccchhhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhc
Confidence 4567788888888888776777788888888888888887742 222 22347888888888888865554311
Q ss_pred ccccc-----------cCCCcCccCCCCCcEEEccCCccCCccchhhhhccCCCEEEcccceeecccCCc-cccceeeee
Q 040206 255 KKLCF-----------GPLPPSLVNCQYLEVLDVGNNQIDDTFLYWLDVLLQLQVLILRSNRFWGPIGKL-RSRWSGHFI 322 (347)
Q Consensus 255 ~~~~~-----------~~l~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~l~L~~n~~~~~~~~~-~~~~~~~~~ 322 (347)
....+ +.+|..+. ++|++|++++|.++. .+..+..+++|+.|++++|++++ +|.. +..+..+..
T Consensus 397 ~l~~L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~~-ip~~~~~l~~L~~L~L~~N~l~~-l~~~~~~~l~~L~~ 472 (520)
T 2z7x_B 397 WTKSLLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIKS-IPKQVVKLEALQELNVASNQLKS-VPDGIFDRLTSLQK 472 (520)
T ss_dssp CCTTCCEEECCSSCCCGGGGGSCC--TTCCEEECCSSCCCC-CCGGGGGCTTCCEEECCSSCCCC-CCTTTTTTCTTCCE
T ss_pred cCccCCEEECcCCCCCcchhhhhc--ccCCEEECCCCcccc-cchhhhcCCCCCEEECCCCcCCc-cCHHHhccCCcccE
Confidence 11000 11111111 567777777777764 44444477777777777777774 4443 444444444
Q ss_pred eE
Q 040206 323 VR 324 (347)
Q Consensus 323 ~~ 324 (347)
+.
T Consensus 473 L~ 474 (520)
T 2z7x_B 473 IW 474 (520)
T ss_dssp EE
T ss_pred EE
Confidence 33
No 24
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.97 E-value=9.4e-30 Score=242.11 Aligned_cols=222 Identities=23% Similarity=0.266 Sum_probs=158.9
Q ss_pred CceEEEecCCCCCCCCh-hhhcCCCccEEeccCCcccccCChhhhhcCCCcccEEEcCCCcCCCCCC---CCCCCCcEEE
Q 040206 1 KTIKTQVKTCNISEFPD-ILRTQHQLEWLDLSKNQIRGRIPSWMWDIGVHTLQFLILSQNVLTSIDH---LPWKNLQYLT 76 (347)
Q Consensus 1 ~l~~l~l~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~---~~~~~L~~L~ 76 (347)
++++|++++|.++.++. +|.++++|++|++++|.+.+..|..+... ++|++|++++|.++.++. ..+++|++|+
T Consensus 26 ~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l--~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~ 103 (680)
T 1ziw_A 26 NITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKL--PMLKVLNLQHNELSQLSDKTFAFCTNLTELH 103 (680)
T ss_dssp TCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHC--TTCCEEECCSSCCCCCCTTTTTTCTTCSEEE
T ss_pred CCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcc--cCcCEEECCCCccCccChhhhccCCCCCEEE
Confidence 47899999999997775 79999999999999999997777777655 999999999999988876 4678999999
Q ss_pred ccCCCCCccCCCC---CCCccEEEcccCcccccCCccccCCCCccEEEcccCcccccCCccc---CCccccEEECCCCcc
Q 040206 77 LDSNLLQGSLPDL---PPHMVQLLISNNSLTGEIPSSFCNLSSIQYLNLSNNSLSGQIPQCL---GNSTLETLDLGMNNF 150 (347)
Q Consensus 77 l~~~~~~~~~~~~---~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~---~~~~L~~L~l~~~~~ 150 (347)
+++|.+....+.. +++|++|++++|.+....+..+.++++|++|++++|.+....+..+ ..++|+.|++++|.+
T Consensus 104 L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l 183 (680)
T 1ziw_A 104 LMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQI 183 (680)
T ss_dssp CCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTCCC
T ss_pred CCCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccccCHHHhhccccccccEEECCCCcc
Confidence 9999988765433 4889999999999987778888899999999999998876555432 346788888888877
Q ss_pred ccccCccCCCC---------------------------CCccEEEccCCcccCCCccccccCC--CCcEEEccCCcccCC
Q 040206 151 QGSIPQTNAKG---------------------------CNLTSLRLSGNHLEGPLPPSLINCV--NLQFLDVGNNNLSGP 201 (347)
Q Consensus 151 ~~~~~~~~~~~---------------------------~~L~~L~l~~~~~~~~~~~~l~~~~--~L~~L~l~~n~~~~~ 201 (347)
....+..+..+ ++|++|++++|.+....+..+..++ +|+.|++++|.+.+.
T Consensus 184 ~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~ 263 (680)
T 1ziw_A 184 KEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVV 263 (680)
T ss_dssp CCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEECTTSCCCEE
T ss_pred cccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhhccCcCCCCEEECCCCCcCcc
Confidence 65555444333 2344444444444433444444432 255555555555544
Q ss_pred CCccccCCCCCCeEEecCCcccc
Q 040206 202 IPECLGNSTRLSFLDVGNNSLSG 224 (347)
Q Consensus 202 ~~~~l~~~~~L~~L~l~~~~~~~ 224 (347)
.+..+..+++|+.|++++|.+.+
T Consensus 264 ~~~~~~~l~~L~~L~L~~n~l~~ 286 (680)
T 1ziw_A 264 GNDSFAWLPQLEYFFLEYNNIQH 286 (680)
T ss_dssp CTTTTTTCTTCCEEECCSCCBSE
T ss_pred CcccccCcccccEeeCCCCccCc
Confidence 44455555555555555555543
No 25
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.97 E-value=1.1e-29 Score=241.75 Aligned_cols=315 Identities=21% Similarity=0.244 Sum_probs=196.1
Q ss_pred ceEEEecCCCCCCC-ChhhhcCCCccEEeccCCcccccCChhhhhcCCCcccEEEcC-----------------------
Q 040206 2 TIKTQVKTCNISEF-PDILRTQHQLEWLDLSKNQIRGRIPSWMWDIGVHTLQFLILS----------------------- 57 (347)
Q Consensus 2 l~~l~l~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~----------------------- 57 (347)
|++|++++|.+..+ |.++.++++|++|++++|.+.+..+..+... ++|+.|+++
T Consensus 250 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l--~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~ 327 (680)
T 1ziw_A 250 LTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGL--FNVRYLNLKRSFTKQSISLASLPKIDDFSFQW 327 (680)
T ss_dssp CCEEECTTSCCCEECTTTTTTCTTCCEEECCSCCBSEECTTTTTTC--TTCCEEECTTCBCCC------CCEECTTTTTT
T ss_pred CCEEECCCCCcCccCcccccCcccccEeeCCCCccCccChhhhcCC--CCccEEeccchhhhcccccccccccChhhccc
Confidence 67777777777743 4567778888888888877775555444322 444444444
Q ss_pred ----------CCcCCCCCC---CCCCCCcEEEccCCCCCc--cCCCC-----CCCccEEEcccCcccccCCccccCCCCc
Q 040206 58 ----------QNVLTSIDH---LPWKNLQYLTLDSNLLQG--SLPDL-----PPHMVQLLISNNSLTGEIPSSFCNLSSI 117 (347)
Q Consensus 58 ----------~~~l~~~~~---~~~~~L~~L~l~~~~~~~--~~~~~-----~~~L~~L~l~~~~~~~~~~~~~~~l~~L 117 (347)
+|.++.+.. ..+++|++|++++|.+.. ..... .++|+.|++++|.+....+..+..+++|
T Consensus 328 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L 407 (680)
T 1ziw_A 328 LKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHL 407 (680)
T ss_dssp CTTCCEEECCSCCBCCCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTC
T ss_pred CCCCCEEECCCCccCCCChhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCCCCC
Confidence 444433332 233444444444443211 00000 1356666666666666666777778888
Q ss_pred cEEEcccCcccccCC-c-ccCCccccEEECCCCccccccCccCCCCCCccEEEccCCccc--CCCccccccCCCCcEEEc
Q 040206 118 QYLNLSNNSLSGQIP-Q-CLGNSTLETLDLGMNNFQGSIPQTNAKGCNLTSLRLSGNHLE--GPLPPSLINCVNLQFLDV 193 (347)
Q Consensus 118 ~~L~l~~~~~~~~~~-~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~--~~~~~~l~~~~~L~~L~l 193 (347)
+.|++++|.+....+ . +..+++|++|++++|.+....+..+..+++|+++++++|.+. ...|..+..+++|+.|++
T Consensus 408 ~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~L 487 (680)
T 1ziw_A 408 EVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDL 487 (680)
T ss_dssp CEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEEC
T ss_pred CEEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCcccccCCCCCEEEC
Confidence 888888887764332 2 225567788888887776555666666677777777666654 245556667777777777
Q ss_pred cCCcccCCCCccccCCCCCCeEEecCCccccCcCc---------cccccCCcEEEcccCcccccCCh-hhhcc-------
Q 040206 194 GNNNLSGPIPECLGNSTRLSFLDVGNNSLSGPIPE---------CLANSTLEILDMRMNKFSGSLPQ-NICKK------- 256 (347)
Q Consensus 194 ~~n~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~---------~~~~~~L~~L~L~~~~~~~~~~~-~~~~~------- 256 (347)
++|.+.+..+..+..+++|+.|++++|.+++.... ....++|+.|++++|.+. .+|. .+...
T Consensus 488 s~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~-~i~~~~~~~l~~L~~L~ 566 (680)
T 1ziw_A 488 SNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFD-EIPVEVFKDLFELKIID 566 (680)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEE
T ss_pred CCCCCCcCChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCC-CCCHHHcccccCcceeE
Confidence 77777665556667777777777777766543211 122256677777777666 3332 22221
Q ss_pred ---ccccCCCc-CccCCCCCcEEEccCCccCCccchhhh-hccCCCEEEcccceeecccC--Ccccccee
Q 040206 257 ---LCFGPLPP-SLVNCQYLEVLDVGNNQIDDTFLYWLD-VLLQLQVLILRSNRFWGPIG--KLRSRWSG 319 (347)
Q Consensus 257 ---~~~~~l~~-~~~~~~~L~~L~L~~n~i~~~~~~~~~-~l~~L~~l~L~~n~~~~~~~--~~~~~~~~ 319 (347)
.....+|. .|..+++|+.|++++|.+++..+..+. .+++|+.+++++|++.+.++ .++..|..
T Consensus 567 Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~l~l~~N~~~c~c~~~~~~~~~~~ 636 (680)
T 1ziw_A 567 LGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTCESIAWFVNWIN 636 (680)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECTTSCCCBCCHHHHHHHHTTCSEEECTTCCCCBCCCCCSSEECCSS
T ss_pred CCCCCCCcCCHhHhCCCCCCCEEECCCCcCCccChhHhcccccccCEEEccCCCcccCCccHHHHHHHHH
Confidence 22234443 467888899999999988887777776 78899999999999988775 56665543
No 26
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.97 E-value=1.3e-29 Score=235.79 Aligned_cols=313 Identities=21% Similarity=0.196 Sum_probs=229.9
Q ss_pred eEEEecCCCCCCCChhhhcCCCccEEeccCCcccccCChhhhhcCCCcccEEEcCCCcCCCCCC---CCCCCCcEEEccC
Q 040206 3 IKTQVKTCNISEFPDILRTQHQLEWLDLSKNQIRGRIPSWMWDIGVHTLQFLILSQNVLTSIDH---LPWKNLQYLTLDS 79 (347)
Q Consensus 3 ~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~---~~~~~L~~L~l~~ 79 (347)
+++++++++++.+|..+. ++|+.|++++|.+++..+..+.. +++|++|++++|.++.+.. ..+++|++|++++
T Consensus 34 ~~l~ls~~~L~~ip~~~~--~~L~~L~Ls~N~i~~~~~~~~~~--l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~ 109 (562)
T 3a79_B 34 SMVDYSNRNLTHVPKDLP--PRTKALSLSQNSISELRMPDISF--LSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSH 109 (562)
T ss_dssp CEEECTTSCCCSCCTTSC--TTCCEEECCSSCCCCCCGGGTTT--CTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTT
T ss_pred cEEEcCCCCCccCCCCCC--CCcCEEECCCCCccccChhhhcc--CCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCC
Confidence 689999999999998665 89999999999999655566664 4999999999999998865 5678999999999
Q ss_pred CCCCccCCCCCCCccEEEcccCccccc-CCccccCCCCccEEEcccCcccccCCcccCCccc--cEEECCCCcc--cccc
Q 040206 80 NLLQGSLPDLPPHMVQLLISNNSLTGE-IPSSFCNLSSIQYLNLSNNSLSGQIPQCLGNSTL--ETLDLGMNNF--QGSI 154 (347)
Q Consensus 80 ~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L--~~L~l~~~~~--~~~~ 154 (347)
|.+.......+++|++|++++|.+... .|..++++++|++|++++|.+... .....++| +.|++++|.+ ....
T Consensus 110 N~l~~lp~~~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~--~~~~l~~L~L~~L~L~~n~l~~~~~~ 187 (562)
T 3a79_B 110 NRLQNISCCPMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQL--DLLPVAHLHLSCILLDLVSYHIKGGE 187 (562)
T ss_dssp SCCCEECSCCCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTT--TTGGGTTSCEEEEEEEESSCCCCSSS
T ss_pred CcCCccCccccccCCEEECCCCCccccCchHhhcccCcccEEecCCCccccC--chhhhhhceeeEEEeecccccccccC
Confidence 999977766779999999999999864 357899999999999999988753 22334445 9999999877 4333
Q ss_pred CccCCCC-------------------------------------------------------------------------
Q 040206 155 PQTNAKG------------------------------------------------------------------------- 161 (347)
Q Consensus 155 ~~~~~~~------------------------------------------------------------------------- 161 (347)
+..+..+
T Consensus 188 ~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l~~~~~~ 267 (562)
T 3a79_B 188 TESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSV 267 (562)
T ss_dssp CCEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEECHHHHH
T ss_pred cccccccCcceEEEEecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEecCCcCcHHHHH
Confidence 3333221
Q ss_pred --------CCccEEEccCCcccCCCcccc---------------------------------------------------
Q 040206 162 --------CNLTSLRLSGNHLEGPLPPSL--------------------------------------------------- 182 (347)
Q Consensus 162 --------~~L~~L~l~~~~~~~~~~~~l--------------------------------------------------- 182 (347)
++|++|++++|.++...|..+
T Consensus 268 ~~~~~~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~~~p~~~~~~~~~~~~L~~L~l~~n~~~~~~ 347 (562)
T 3a79_B 268 KLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMV 347 (562)
T ss_dssp HHHHHHTTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCCSSCHHHHHHHHHTCCCSEEEEESSCCCCCC
T ss_pred HHHHhhhcccccEEEEeccEeeccccchhhhcccccchheehhhcccceeecChhhhhhhhccCcceEEEccCCCccccc
Confidence 156677777776654444333
Q ss_pred --ccCCCCcEEEccCCcccCCCCccccCCCCCCeEEecCCccccCcC--c-cccccCCcEEEcccCcccccCChhhhc-c
Q 040206 183 --INCVNLQFLDVGNNNLSGPIPECLGNSTRLSFLDVGNNSLSGPIP--E-CLANSTLEILDMRMNKFSGSLPQNICK-K 256 (347)
Q Consensus 183 --~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~--~-~~~~~~L~~L~L~~~~~~~~~~~~~~~-~ 256 (347)
..+++|++|++++|.+.+..+..+..+++|+.|++++|.+++... . ....++|+.|++++|.+.+.+|..... .
T Consensus 348 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l 427 (562)
T 3a79_B 348 CPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWA 427 (562)
T ss_dssp CCSSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCC
T ss_pred CccCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCc
Confidence 567899999999999998888899999999999999999986432 2 234489999999999999756653211 1
Q ss_pred ccc-------cCC-CcCccCC-CCCcEEEccCCccCCccchhhhhccCCCEEEcccceeecccCCc-cccceeeeee
Q 040206 257 LCF-------GPL-PPSLVNC-QYLEVLDVGNNQIDDTFLYWLDVLLQLQVLILRSNRFWGPIGKL-RSRWSGHFIV 323 (347)
Q Consensus 257 ~~~-------~~l-~~~~~~~-~~L~~L~L~~n~i~~~~~~~~~~l~~L~~l~L~~n~~~~~~~~~-~~~~~~~~~~ 323 (347)
..+ ..+ ...+..+ ++|++|++++|.++..+.. +..+++|+.|++++|++++ +|.. +..+..+..+
T Consensus 428 ~~L~~L~l~~n~l~~~~~~~l~~~L~~L~L~~N~l~~ip~~-~~~l~~L~~L~L~~N~l~~-l~~~~~~~l~~L~~L 502 (562)
T 3a79_B 428 ESILVLNLSSNMLTGSVFRCLPPKVKVLDLHNNRIMSIPKD-VTHLQALQELNVASNQLKS-VPDGVFDRLTSLQYI 502 (562)
T ss_dssp TTCCEEECCSSCCCGGGGSSCCTTCSEEECCSSCCCCCCTT-TTSSCCCSEEECCSSCCCC-CCTTSTTTCTTCCCE
T ss_pred ccCCEEECCCCCCCcchhhhhcCcCCEEECCCCcCcccChh-hcCCCCCCEEECCCCCCCC-CCHHHHhcCCCCCEE
Confidence 000 000 0111222 5777888888877753333 4477888888888888874 5544 5555444443
No 27
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.97 E-value=4.4e-30 Score=239.56 Aligned_cols=126 Identities=21% Similarity=0.222 Sum_probs=90.9
Q ss_pred ceEEEecCCCCCCCC-hhhhcCCCccEEeccCCcccccCChhhhhcCCCcccEEEcCCCcCCCCCC---CCCCCCcEEEc
Q 040206 2 TIKTQVKTCNISEFP-DILRTQHQLEWLDLSKNQIRGRIPSWMWDIGVHTLQFLILSQNVLTSIDH---LPWKNLQYLTL 77 (347)
Q Consensus 2 l~~l~l~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~---~~~~~L~~L~l 77 (347)
+++|++++|.++.++ .+|.++++|++|++++|.+.+..+..+. ++++|++|++++|.++.++. ..+++|++|++
T Consensus 30 l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~--~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 107 (570)
T 2z63_A 30 TKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQ--SLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA 107 (570)
T ss_dssp CCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTT--TCTTCCEEECTTCCCCEECTTTTTTCTTCCEEEC
T ss_pred ccEEEccCCccCccChhHhhCCCCceEEECCCCcCCccCccccc--CchhCCEEeCcCCcCCccCHhhhcCccccccccc
Confidence 677888888888554 4788888888888888888754444554 34888888888888777664 45677888888
Q ss_pred cCCCCCccCC---CCCCCccEEEcccCccccc-CCccccCCCCccEEEcccCcccc
Q 040206 78 DSNLLQGSLP---DLPPHMVQLLISNNSLTGE-IPSSFCNLSSIQYLNLSNNSLSG 129 (347)
Q Consensus 78 ~~~~~~~~~~---~~~~~L~~L~l~~~~~~~~-~~~~~~~l~~L~~L~l~~~~~~~ 129 (347)
++|.+..... ..+++|++|++++|.+... .|..+.++++|++|++++|.+..
T Consensus 108 ~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~ 163 (570)
T 2z63_A 108 VETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS 163 (570)
T ss_dssp TTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCE
T ss_pred cccccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccce
Confidence 8887765432 3347788888888877753 46777777888888877776554
No 28
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.97 E-value=2.5e-29 Score=228.51 Aligned_cols=293 Identities=25% Similarity=0.292 Sum_probs=131.7
Q ss_pred ceEEEecCCCCCCCChhhhcCCCccEEeccCCcccccCChhhhhcCCCcccEEEcCCCcCCCCCC-CCCCCCcEEEccCC
Q 040206 2 TIKTQVKTCNISEFPDILRTQHQLEWLDLSKNQIRGRIPSWMWDIGVHTLQFLILSQNVLTSIDH-LPWKNLQYLTLDSN 80 (347)
Q Consensus 2 l~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~-~~~~~L~~L~l~~~ 80 (347)
++.|++.++.+..+|. +..+++|++|++++|.+.+ +++ +. .+++|++|++++|.++.++. ..+++|++|++++|
T Consensus 48 l~~L~l~~~~i~~l~~-~~~l~~L~~L~Ls~n~l~~-~~~-~~--~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~L~~n 122 (466)
T 1o6v_A 48 VTTLQADRLGIKSIDG-VEYLNNLTQINFSNNQLTD-ITP-LK--NLTKLVDILMNNNQIADITPLANLTNLTGLTLFNN 122 (466)
T ss_dssp CCEEECCSSCCCCCTT-GGGCTTCCEEECCSSCCCC-CGG-GT--TCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSS
T ss_pred ccEEecCCCCCccCcc-hhhhcCCCEEECCCCccCC-chh-hh--ccccCCEEECCCCccccChhhcCCCCCCEEECCCC
Confidence 4455555555555543 4555555555555555542 222 22 22555555555555444433 34444555555554
Q ss_pred CCCccCC-CCCCCccEEEcccCcccccC-------------------CccccCCCCccEEEcccCcccccCCcccCCccc
Q 040206 81 LLQGSLP-DLPPHMVQLLISNNSLTGEI-------------------PSSFCNLSSIQYLNLSNNSLSGQIPQCLGNSTL 140 (347)
Q Consensus 81 ~~~~~~~-~~~~~L~~L~l~~~~~~~~~-------------------~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L 140 (347)
.+....+ ..+++|++|++++|.+.... ...+..+++|+.|++++|.+... +....+++|
T Consensus 123 ~l~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~l~~l~~L 201 (466)
T 1o6v_A 123 QITDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDI-SVLAKLTNL 201 (466)
T ss_dssp CCCCCGGGTTCTTCSEEEEEEEEECCCGGGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSSCCCCC-GGGGGCTTC
T ss_pred CCCCChHHcCCCCCCEEECCCCccCCChhhccCCcccEeecCCcccCchhhccCCCCCEEECcCCcCCCC-hhhccCCCC
Confidence 4443221 11244444444444333110 01133344444455544444322 112233344
Q ss_pred cEEECCCCccccccC--------------------ccCCCCCCccEEEccCCcccCCCccccccCCCCcEEEccCCcccC
Q 040206 141 ETLDLGMNNFQGSIP--------------------QTNAKGCNLTSLRLSGNHLEGPLPPSLINCVNLQFLDVGNNNLSG 200 (347)
Q Consensus 141 ~~L~l~~~~~~~~~~--------------------~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~ 200 (347)
+.|++++|.+....+ ..+..+++|++|++++|.+....+ +..+++|+.|++++|.+.+
T Consensus 202 ~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~ 279 (466)
T 1o6v_A 202 ESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISN 279 (466)
T ss_dssp SEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCCC
T ss_pred CEEEecCCcccccccccccCCCCEEECCCCCcccchhhhcCCCCCEEECCCCccccchh--hhcCCCCCEEECCCCccCc
Confidence 444444443332211 223344455555555554442211 4445555555555555543
Q ss_pred CCCccccCCCCCCeEEecCCccccCcCccccccCCcEEEcccCcccccCChhhhcc--------ccccCCCcCccCCCCC
Q 040206 201 PIPECLGNSTRLSFLDVGNNSLSGPIPECLANSTLEILDMRMNKFSGSLPQNICKK--------LCFGPLPPSLVNCQYL 272 (347)
Q Consensus 201 ~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~--------~~~~~l~~~~~~~~~L 272 (347)
..+ +..+++|+.|++++|.+.+..+ ....++|+.|++++|.+.+..|...... .....+ ..+..+++|
T Consensus 280 ~~~--~~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~-~~l~~l~~L 355 (466)
T 1o6v_A 280 ISP--LAGLTALTNLELNENQLEDISP-ISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFYNNKVSDV-SSLANLTNI 355 (466)
T ss_dssp CGG--GTTCTTCSEEECCSSCCSCCGG-GGGCTTCSEEECCSSCCSCCGGGGGCTTCCEEECCSSCCCCC-GGGTTCTTC
T ss_pred ccc--ccCCCccCeEEcCCCcccCchh-hcCCCCCCEEECcCCcCCCchhhccCccCCEeECCCCccCCc-hhhccCCCC
Confidence 222 4455555555555555543322 2233556666666665554322110000 011112 234555666
Q ss_pred cEEEccCCccCCccchhhhhccCCCEEEcccceeec
Q 040206 273 EVLDVGNNQIDDTFLYWLDVLLQLQVLILRSNRFWG 308 (347)
Q Consensus 273 ~~L~L~~n~i~~~~~~~~~~l~~L~~l~L~~n~~~~ 308 (347)
+.|++++|.+.+..+ +..+++|+.|++++|++++
T Consensus 356 ~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~~~~ 389 (466)
T 1o6v_A 356 NWLSAGHNQISDLTP--LANLTRITQLGLNDQAWTN 389 (466)
T ss_dssp CEEECCSSCCCBCGG--GTTCTTCCEEECCCEEEEC
T ss_pred CEEeCCCCccCccch--hhcCCCCCEEeccCCcccC
Confidence 666666666655444 5566666666666666665
No 29
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.97 E-value=1.5e-29 Score=234.95 Aligned_cols=80 Identities=26% Similarity=0.278 Sum_probs=40.7
Q ss_pred ceEEEecCCCCCCC-ChhhhcCCCccEEeccCCcccccCChhhhhcCCCcccEEEcCCCcCCCCCC---CCCCCCcEEEc
Q 040206 2 TIKTQVKTCNISEF-PDILRTQHQLEWLDLSKNQIRGRIPSWMWDIGVHTLQFLILSQNVLTSIDH---LPWKNLQYLTL 77 (347)
Q Consensus 2 l~~l~l~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~---~~~~~L~~L~l 77 (347)
+++|++++|.++.+ |.+|.++++|++|++++|.+++..+..+..+ ++|++|++++|.++.++. ..+++|++|++
T Consensus 28 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l--~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 105 (549)
T 2z81_A 28 MKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSL--GSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNL 105 (549)
T ss_dssp CCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTC--TTCCEEECTTSCCCSCCHHHHTTCTTCCEEEC
T ss_pred ccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhcccc--ccCCEEECCCCccCccCHHHhccCCCCcEEEC
Confidence 45555555555533 3455555555555555555554333344322 555555555555554443 34455555555
Q ss_pred cCCCCC
Q 040206 78 DSNLLQ 83 (347)
Q Consensus 78 ~~~~~~ 83 (347)
++|.+.
T Consensus 106 s~n~l~ 111 (549)
T 2z81_A 106 MGNPYQ 111 (549)
T ss_dssp TTCCCS
T ss_pred CCCccc
Confidence 555544
No 30
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.97 E-value=1.7e-29 Score=235.56 Aligned_cols=225 Identities=20% Similarity=0.234 Sum_probs=159.3
Q ss_pred CcEEEccCCCCCccCCCCCCCccEEEcccCcccccCCccccCCCCccEEEcccCcccccC---CcccCCccccEEECCCC
Q 040206 72 LQYLTLDSNLLQGSLPDLPPHMVQLLISNNSLTGEIPSSFCNLSSIQYLNLSNNSLSGQI---PQCLGNSTLETLDLGMN 148 (347)
Q Consensus 72 L~~L~l~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~---~~~~~~~~L~~L~l~~~ 148 (347)
|++|++++|.+.......+++|++|++++|.+....+. ..+++|++|++++|.+.... .....+++|+.|++++|
T Consensus 306 L~~L~l~~n~~~~l~~~~l~~L~~L~l~~n~~~~~~~~--~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n 383 (570)
T 2z63_A 306 WQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSE--VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFN 383 (570)
T ss_dssp CSEEEEESCBCSSCCBCBCSSCCEEEEESCBSCCBCCC--CBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSC
T ss_pred ccEEeeccCcccccCcccccccCEEeCcCCcccccccc--ccCCCCCEEeCcCCccCccccccccccccCccCEEECCCC
Confidence 33333333333333333345555555555554433222 56677777887777766442 22335667888888888
Q ss_pred ccccccCccCCCCCCccEEEccCCcccCCCc-cccccCCCCcEEEccCCcccCCCCccccCCCCCCeEEecCCccc-cCc
Q 040206 149 NFQGSIPQTNAKGCNLTSLRLSGNHLEGPLP-PSLINCVNLQFLDVGNNNLSGPIPECLGNSTRLSFLDVGNNSLS-GPI 226 (347)
Q Consensus 149 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~l~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~~~~~-~~~ 226 (347)
.+....+ .+..+++|++|++++|.+....+ ..+..+++|+.|++++|.+.+..+..+..+++|+.|++++|.+. +..
T Consensus 384 ~l~~~~~-~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 462 (570)
T 2z63_A 384 GVITMSS-NFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFL 462 (570)
T ss_dssp SEEEEEE-EEETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEE
T ss_pred ccccccc-cccccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccc
Confidence 7764333 37778888888888888775544 45778888888888888887777778888888888888888876 234
Q ss_pred Cccc-cccCCcEEEcccCcccccCChhhhccccccCCCcCccCCCCCcEEEccCCccCCccchhhhhccCCCEEEcccce
Q 040206 227 PECL-ANSTLEILDMRMNKFSGSLPQNICKKLCFGPLPPSLVNCQYLEVLDVGNNQIDDTFLYWLDVLLQLQVLILRSNR 305 (347)
Q Consensus 227 ~~~~-~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~l~L~~n~ 305 (347)
+..+ ..++|+.|++++|.+++. .|..+..+++|++|++++|.+++.++..+..+++|+.|++++|+
T Consensus 463 p~~~~~l~~L~~L~l~~n~l~~~-------------~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~ 529 (570)
T 2z63_A 463 PDIFTELRNLTFLDLSQCQLEQL-------------SPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNP 529 (570)
T ss_dssp CSCCTTCTTCCEEECTTSCCCEE-------------CTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred hhhhhcccCCCEEECCCCccccC-------------ChhhhhcccCCCEEeCCCCcCCCCCHHHhhcccCCcEEEecCCc
Confidence 4333 347888899988888854 34567889999999999999998888888899999999999999
Q ss_pred eecccCC
Q 040206 306 FWGPIGK 312 (347)
Q Consensus 306 ~~~~~~~ 312 (347)
+.+.+|.
T Consensus 530 ~~~~~~~ 536 (570)
T 2z63_A 530 WDCSCPR 536 (570)
T ss_dssp BCCCTTT
T ss_pred ccCCCcc
Confidence 9998874
No 31
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.97 E-value=1.4e-29 Score=245.90 Aligned_cols=293 Identities=18% Similarity=0.157 Sum_probs=207.2
Q ss_pred CceEEEecCCCCCC-CChhhhcCCCccEEeccCCcccccC-ChhhhhcCCCcccEEEcCCCcCCCCCC---CCCCCCcEE
Q 040206 1 KTIKTQVKTCNISE-FPDILRTQHQLEWLDLSKNQIRGRI-PSWMWDIGVHTLQFLILSQNVLTSIDH---LPWKNLQYL 75 (347)
Q Consensus 1 ~l~~l~l~~~~~~~-~~~~~~~~~~L~~L~l~~~~~~~~~-~~~~~~~~~~~L~~L~l~~~~l~~~~~---~~~~~L~~L 75 (347)
++++|+|++|.++. .|..|.++++|++|++++|...+.+ |..+. .+++|++|++++|.++.+.+ ..+++|++|
T Consensus 25 ~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~--~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L 102 (844)
T 3j0a_A 25 TTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFR--NLPNLRILDLGSSKIYFLHPDAFQGLFHLFEL 102 (844)
T ss_dssp TCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTS--SCTTCCEEECTTCCCCEECTTSSCSCSSCCCE
T ss_pred CcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhc--CCCCCCEEECCCCcCcccCHhHccCCcccCEe
Confidence 47899999999994 4678999999999999999666666 44554 45999999999999988755 567899999
Q ss_pred EccCCCCCccC-----CCCCCCccEEEcccCcccccCC-ccccCCCCccEEEcccCcccccCCcccC-C--ccccEEECC
Q 040206 76 TLDSNLLQGSL-----PDLPPHMVQLLISNNSLTGEIP-SSFCNLSSIQYLNLSNNSLSGQIPQCLG-N--STLETLDLG 146 (347)
Q Consensus 76 ~l~~~~~~~~~-----~~~~~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~~~~~-~--~~L~~L~l~ 146 (347)
++++|.+.+.. ...+++|++|++++|.+....+ ..++++++|++|++++|.+....+..+. . ++|+.|+++
T Consensus 103 ~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~ 182 (844)
T 3j0a_A 103 RLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLA 182 (844)
T ss_dssp ECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCEEC
T ss_pred eCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccceEECC
Confidence 99999988643 2335899999999999986554 5789999999999999988765554442 2 567777777
Q ss_pred CCccccccCccCCCCCC------ccEEEccCCcccCCCccccc------------------------------------c
Q 040206 147 MNNFQGSIPQTNAKGCN------LTSLRLSGNHLEGPLPPSLI------------------------------------N 184 (347)
Q Consensus 147 ~~~~~~~~~~~~~~~~~------L~~L~l~~~~~~~~~~~~l~------------------------------------~ 184 (347)
+|.+....+..+..+++ |+.|++++|.++...+..+. .
T Consensus 183 ~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~ 262 (844)
T 3j0a_A 183 ANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAG 262 (844)
T ss_dssp CSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTT
T ss_pred CCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCCCChhhhhc
Confidence 77766555554444443 77777777754432222211 1
Q ss_pred --CCCCcEEEccCCcccCCCCccccCCCCCCeEEecCCccccCcCcccc-ccCCcEEEcccCcccccCChhhhccccccC
Q 040206 185 --CVNLQFLDVGNNNLSGPIPECLGNSTRLSFLDVGNNSLSGPIPECLA-NSTLEILDMRMNKFSGSLPQNICKKLCFGP 261 (347)
Q Consensus 185 --~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~-~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~ 261 (347)
.++|+.|++++|.+.+..+..+..+++|+.|++++|.+.+..+..+. .++|+.|++++|.+.+.
T Consensus 263 l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~------------- 329 (844)
T 3j0a_A 263 LARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGEL------------- 329 (844)
T ss_dssp TTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCC-------------
T ss_pred cccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCcc-------------
Confidence 25677777777777666666777777777777777777665554333 36777777777777643
Q ss_pred CCcCccCCCCCcEEEccCCccCCccchhhhhccCCCEEEcccceeec
Q 040206 262 LPPSLVNCQYLEVLDVGNNQIDDTFLYWLDVLLQLQVLILRSNRFWG 308 (347)
Q Consensus 262 l~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~l~L~~n~~~~ 308 (347)
.+..+..+++|+.|++++|.+....+..+..+++|+.|++++|.+++
T Consensus 330 ~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~ 376 (844)
T 3j0a_A 330 YSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTT 376 (844)
T ss_dssp CSCSCSSCTTCCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCCSCC
T ss_pred CHHHhcCCCCCCEEECCCCCCCccChhhhcCCCCCCEEECCCCCCCc
Confidence 23455666666666766666666555556666666666666666553
No 32
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.97 E-value=1.7e-28 Score=223.13 Aligned_cols=214 Identities=27% Similarity=0.292 Sum_probs=153.6
Q ss_pred hcCCCccEEeccCCcccccCChhhhhcCCCcccEEEcCCCcCCCCCC-CCCCCCcEEEccCCCCCccCC-CCCCCccEEE
Q 040206 20 RTQHQLEWLDLSKNQIRGRIPSWMWDIGVHTLQFLILSQNVLTSIDH-LPWKNLQYLTLDSNLLQGSLP-DLPPHMVQLL 97 (347)
Q Consensus 20 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~-~~~~~L~~L~l~~~~~~~~~~-~~~~~L~~L~ 97 (347)
..+++++.|+++++.+. .++. +. .+++|++|++++|.++.++. ..+++|++|++++|.+....+ ..+++|++|+
T Consensus 43 ~~l~~l~~L~l~~~~i~-~l~~-~~--~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~ 118 (466)
T 1o6v_A 43 TDLDQVTTLQADRLGIK-SIDG-VE--YLNNLTQINFSNNQLTDITPLKNLTKLVDILMNNNQIADITPLANLTNLTGLT 118 (466)
T ss_dssp HHHHTCCEEECCSSCCC-CCTT-GG--GCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCGGGTTCTTCCEEE
T ss_pred hHhccccEEecCCCCCc-cCcc-hh--hhcCCCEEECCCCccCCchhhhccccCCEEECCCCccccChhhcCCCCCCEEE
Confidence 45789999999999987 5654 44 45999999999999998875 778999999999999886543 3458999999
Q ss_pred cccCcccccCCccccCCCCccEEEcccCcccccCC--------------------cccCCccccEEECCCCccccccCcc
Q 040206 98 ISNNSLTGEIPSSFCNLSSIQYLNLSNNSLSGQIP--------------------QCLGNSTLETLDLGMNNFQGSIPQT 157 (347)
Q Consensus 98 l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~--------------------~~~~~~~L~~L~l~~~~~~~~~~~~ 157 (347)
+++|.+....+ +..+++|++|++++|.+..... ....+++|+.|++++|.+... ..
T Consensus 119 L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~ 194 (466)
T 1o6v_A 119 LFNNQITDIDP--LKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDI--SV 194 (466)
T ss_dssp CCSSCCCCCGG--GTTCTTCSEEEEEEEEECCCGGGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSSCCCCC--GG
T ss_pred CCCCCCCCChH--HcCCCCCCEEECCCCccCCChhhccCCcccEeecCCcccCchhhccCCCCCEEECcCCcCCCC--hh
Confidence 99999986533 8899999999999998764321 122456899999999987633 34
Q ss_pred CCCCCCccEEEccCCcccCCCccccccCCCCcEEEccCCcccCCCCccccCCCCCCeEEecCCccccCcCccccccCCcE
Q 040206 158 NAKGCNLTSLRLSGNHLEGPLPPSLINCVNLQFLDVGNNNLSGPIPECLGNSTRLSFLDVGNNSLSGPIPECLANSTLEI 237 (347)
Q Consensus 158 ~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~ 237 (347)
+..+++|++|++++|.+....+ ++.+++|+.|++++|.+.+. ..+..+++|+.|++++|.+.+..+ ....++|+.
T Consensus 195 l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~ 269 (466)
T 1o6v_A 195 LAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNLAP-LSGLTKLTE 269 (466)
T ss_dssp GGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG-GTTCTTCSE
T ss_pred hccCCCCCEEEecCCccccccc--ccccCCCCEEECCCCCcccc--hhhhcCCCCCEEECCCCccccchh-hhcCCCCCE
Confidence 6778889999999888774433 56667777777777766532 245555666666666665553332 222244555
Q ss_pred EEcccCccc
Q 040206 238 LDMRMNKFS 246 (347)
Q Consensus 238 L~L~~~~~~ 246 (347)
|++++|.+.
T Consensus 270 L~l~~n~l~ 278 (466)
T 1o6v_A 270 LKLGANQIS 278 (466)
T ss_dssp EECCSSCCC
T ss_pred EECCCCccC
Confidence 555555444
No 33
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.97 E-value=2.1e-28 Score=221.02 Aligned_cols=281 Identities=21% Similarity=0.222 Sum_probs=199.1
Q ss_pred CceEEEecCCCCCCCChhhhcCCCccEEeccCCcccccCChhhhhcCCCcccEEEcCCCcCCCCCCCCCCCCcEEEccCC
Q 040206 1 KTIKTQVKTCNISEFPDILRTQHQLEWLDLSKNQIRGRIPSWMWDIGVHTLQFLILSQNVLTSIDHLPWKNLQYLTLDSN 80 (347)
Q Consensus 1 ~l~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~L~~L~l~~~ 80 (347)
++++|++++|.++.+| .+.++++|++|++++|.+++ ++ +. .+++|++|++++|.++.++...+++|++|++++|
T Consensus 43 ~L~~L~Ls~n~l~~~~-~l~~l~~L~~L~Ls~n~l~~-~~--~~--~l~~L~~L~Ls~N~l~~~~~~~l~~L~~L~L~~N 116 (457)
T 3bz5_A 43 TLTSLDCHNSSITDMT-GIEKLTGLTKLICTSNNITT-LD--LS--QNTNLTYLACDSNKLTNLDVTPLTKLTYLNCDTN 116 (457)
T ss_dssp TCCEEECCSSCCCCCT-TGGGCTTCSEEECCSSCCSC-CC--CT--TCTTCSEEECCSSCCSCCCCTTCTTCCEEECCSS
T ss_pred CCCEEEccCCCcccCh-hhcccCCCCEEEccCCcCCe-Ec--cc--cCCCCCEEECcCCCCceeecCCCCcCCEEECCCC
Confidence 4789999999999887 58999999999999999985 44 44 4499999999999999988788899999999999
Q ss_pred CCCccCCCCCCCccEEEcccCcccccCCccccCCCCccEEEcccCcccccCCcccCCccccEEECCCCccccccCccCCC
Q 040206 81 LLQGSLPDLPPHMVQLLISNNSLTGEIPSSFCNLSSIQYLNLSNNSLSGQIPQCLGNSTLETLDLGMNNFQGSIPQTNAK 160 (347)
Q Consensus 81 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~ 160 (347)
.+.+.....+++|++|++++|.++.. .++.+++|++|++++|...+.. ....+++|+.|++++|.+.. .+ +..
T Consensus 117 ~l~~l~~~~l~~L~~L~l~~N~l~~l---~l~~l~~L~~L~l~~n~~~~~~-~~~~l~~L~~L~ls~n~l~~-l~--l~~ 189 (457)
T 3bz5_A 117 KLTKLDVSQNPLLTYLNCARNTLTEI---DVSHNTQLTELDCHLNKKITKL-DVTPQTQLTTLDCSFNKITE-LD--VSQ 189 (457)
T ss_dssp CCSCCCCTTCTTCCEEECTTSCCSCC---CCTTCTTCCEEECTTCSCCCCC-CCTTCTTCCEEECCSSCCCC-CC--CTT
T ss_pred cCCeecCCCCCcCCEEECCCCcccee---ccccCCcCCEEECCCCCccccc-ccccCCcCCEEECCCCccce-ec--ccc
Confidence 98877656678999999999988864 3677888888888888433232 33455678888888887764 33 666
Q ss_pred CCCccEEEccCCcccCCCccccccCCCCcEEEccCCcccCCCCccccCCCCCCeEEecCCccccCcCcccc---------
Q 040206 161 GCNLTSLRLSGNHLEGPLPPSLINCVNLQFLDVGNNNLSGPIPECLGNSTRLSFLDVGNNSLSGPIPECLA--------- 231 (347)
Q Consensus 161 ~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~--------- 231 (347)
+++|+.|++++|.++.. .++.+++|+.|++++|.+.+ +| +..+++|+.|++++|.+++.....+.
T Consensus 190 l~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~~-ip--~~~l~~L~~L~l~~N~l~~~~~~~l~~L~~L~l~~ 263 (457)
T 3bz5_A 190 NKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTE-ID--VTPLTQLTYFDCSVNPLTELDVSTLSKLTTLHCIQ 263 (457)
T ss_dssp CTTCCEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSC-CC--CTTCTTCSEEECCSSCCSCCCCTTCTTCCEEECTT
T ss_pred CCCCCEEECcCCcCCee---ccccCCCCCEEECcCCcccc-cC--ccccCCCCEEEeeCCcCCCcCHHHCCCCCEEeccC
Confidence 77788888877777643 36677777777777777775 33 66777777777777776654322111
Q ss_pred ---------------------ccCCcEEEcccCcccccCChhhhccccccCCCcCccCCCCCcEEEccCCccCCccchhh
Q 040206 232 ---------------------NSTLEILDMRMNKFSGSLPQNICKKLCFGPLPPSLVNCQYLEVLDVGNNQIDDTFLYWL 290 (347)
Q Consensus 232 ---------------------~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~i~~~~~~~~ 290 (347)
.++|+.|++++|...+.+|... .....+ .++.+++|++|++++|.+++. + +
T Consensus 264 n~L~~L~l~~n~~~~~~~~~~l~~L~~L~Ls~n~~l~~l~~~~---~~L~~L--~l~~~~~L~~L~L~~N~l~~l-~--l 335 (457)
T 3bz5_A 264 TDLLEIDLTHNTQLIYFQAEGCRKIKELDVTHNTQLYLLDCQA---AGITEL--DLSQNPKLVYLYLNNTELTEL-D--V 335 (457)
T ss_dssp CCCSCCCCTTCTTCCEEECTTCTTCCCCCCTTCTTCCEEECTT---CCCSCC--CCTTCTTCCEEECTTCCCSCC-C--C
T ss_pred CCCCEEECCCCccCCcccccccccCCEEECCCCcccceeccCC---CcceEe--chhhcccCCEEECCCCccccc-c--c
Confidence 1233333333333332222111 111122 256777888888888888774 2 6
Q ss_pred hhccCCCEEEcccceeec
Q 040206 291 DVLLQLQVLILRSNRFWG 308 (347)
Q Consensus 291 ~~l~~L~~l~L~~n~~~~ 308 (347)
..+++|+.|++++|++.+
T Consensus 336 ~~l~~L~~L~l~~N~l~~ 353 (457)
T 3bz5_A 336 SHNTKLKSLSCVNAHIQD 353 (457)
T ss_dssp TTCTTCSEEECCSSCCCB
T ss_pred ccCCcCcEEECCCCCCCC
Confidence 778888888888888776
No 34
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.97 E-value=8e-29 Score=215.27 Aligned_cols=265 Identities=20% Similarity=0.199 Sum_probs=224.1
Q ss_pred CceEEEecCCCCCCCCh-hhhcCCCccEEeccCCcccccCChhhhhcCCCcccEEEcCCCcCCCCCCCCCCCCcEEEccC
Q 040206 1 KTIKTQVKTCNISEFPD-ILRTQHQLEWLDLSKNQIRGRIPSWMWDIGVHTLQFLILSQNVLTSIDHLPWKNLQYLTLDS 79 (347)
Q Consensus 1 ~l~~l~l~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~L~~L~l~~ 79 (347)
.++.|++++|.++.++. ++.++++|++|++++|.+++..|..+... ++|++|++++|.++.++...+++|++|++++
T Consensus 53 ~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l--~~L~~L~Ls~n~l~~l~~~~~~~L~~L~l~~ 130 (330)
T 1xku_A 53 DTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPL--VKLERLYLSKNQLKELPEKMPKTLQELRVHE 130 (330)
T ss_dssp TCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTC--TTCCEEECCSSCCSBCCSSCCTTCCEEECCS
T ss_pred CCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCC--CCCCEEECCCCcCCccChhhcccccEEECCC
Confidence 47899999999997775 89999999999999999997667777754 9999999999999999887779999999999
Q ss_pred CCCCccCC---CCCCCccEEEcccCcccc--cCCccccCCCCccEEEcccCcccccCCcccCCccccEEECCCCcccccc
Q 040206 80 NLLQGSLP---DLPPHMVQLLISNNSLTG--EIPSSFCNLSSIQYLNLSNNSLSGQIPQCLGNSTLETLDLGMNNFQGSI 154 (347)
Q Consensus 80 ~~~~~~~~---~~~~~L~~L~l~~~~~~~--~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~ 154 (347)
|.+..... ..+++|++|++++|.+.. ..+..+..+++|++|++++|.+...+.... ++|++|++++|.+....
T Consensus 131 n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~~--~~L~~L~l~~n~l~~~~ 208 (330)
T 1xku_A 131 NEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLP--PSLTELHLDGNKITKVD 208 (330)
T ss_dssp SCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCSCCSSCC--TTCSEEECTTSCCCEEC
T ss_pred CcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCccccCCcccc--ccCCEEECCCCcCCccC
Confidence 99987654 345899999999999863 667788999999999999999986544332 78999999999998777
Q ss_pred CccCCCCCCccEEEccCCcccCCCccccccCCCCcEEEccCCcccCCCCccccCCCCCCeEEecCCccccCcCcccc---
Q 040206 155 PQTNAKGCNLTSLRLSGNHLEGPLPPSLINCVNLQFLDVGNNNLSGPIPECLGNSTRLSFLDVGNNSLSGPIPECLA--- 231 (347)
Q Consensus 155 ~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~--- 231 (347)
+..+..+++|++|++++|.++...+..+..+++|+.|++++|.+. .+|..+..+++|+.|++++|.+++.....+.
T Consensus 209 ~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~ 287 (330)
T 1xku_A 209 AASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPG 287 (330)
T ss_dssp TGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSS
T ss_pred HHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCc-cCChhhccCCCcCEEECCCCcCCccChhhcCCcc
Confidence 888999999999999999998777778999999999999999998 6778899999999999999999876655543
Q ss_pred ----ccCCcEEEcccCcccccCChhhhccccccCCCcCccCCCCCcEEEccCCc
Q 040206 232 ----NSTLEILDMRMNKFSGSLPQNICKKLCFGPLPPSLVNCQYLEVLDVGNNQ 281 (347)
Q Consensus 232 ----~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~ 281 (347)
...++.+++++|.+... ...|..|..+..++.+++++|+
T Consensus 288 ~~~~~~~l~~l~l~~N~~~~~-----------~i~~~~f~~~~~l~~l~L~~N~ 330 (330)
T 1xku_A 288 YNTKKASYSGVSLFSNPVQYW-----------EIQPSTFRCVYVRAAVQLGNYK 330 (330)
T ss_dssp CCTTSCCCSEEECCSSSSCGG-----------GSCGGGGTTCCCGGGEEC----
T ss_pred cccccccccceEeecCccccc-----------ccCccccccccceeEEEecccC
Confidence 26789999999988632 1234568889999999999885
No 35
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.97 E-value=1.2e-29 Score=218.55 Aligned_cols=247 Identities=26% Similarity=0.393 Sum_probs=180.9
Q ss_pred CCccEEeccCCcccc--cCChhhhhcCCCcccEEEcCC-CcCCCCCC---CCCCCCcEEEccCCCCCccCCCCCCCccEE
Q 040206 23 HQLEWLDLSKNQIRG--RIPSWMWDIGVHTLQFLILSQ-NVLTSIDH---LPWKNLQYLTLDSNLLQGSLPDLPPHMVQL 96 (347)
Q Consensus 23 ~~L~~L~l~~~~~~~--~~~~~~~~~~~~~L~~L~l~~-~~l~~~~~---~~~~~L~~L~l~~~~~~~~~~~~~~~L~~L 96 (347)
.+++.|+++++.+.+ .+|..+..+ ++|++|++++ |.+.+..+ ..+++ |++|
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l--~~L~~L~L~~~n~l~~~~p~~l~~l~~---------------------L~~L 106 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANL--PYLNFLYIGGINNLVGPIPPAIAKLTQ---------------------LHYL 106 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGC--TTCSEEEEEEETTEESCCCGGGGGCTT---------------------CSEE
T ss_pred ceEEEEECCCCCccCCcccChhHhCC--CCCCeeeCCCCCcccccCChhHhcCCC---------------------CCEE
Confidence 567888888888876 677776654 7777777763 55443222 22333 4444
Q ss_pred EcccCcccccCCccccCCCCccEEEcccCcccccCCccc-CCccccEEECCCCccccccCccCCCCC-CccEEEccCCcc
Q 040206 97 LISNNSLTGEIPSSFCNLSSIQYLNLSNNSLSGQIPQCL-GNSTLETLDLGMNNFQGSIPQTNAKGC-NLTSLRLSGNHL 174 (347)
Q Consensus 97 ~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~-~L~~L~l~~~~~ 174 (347)
++++|.+....|..+..+++|++|++++|.+....+..+ .+++|++|++++|.+.+..|..+..++ +|++|++++|.+
T Consensus 107 ~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l 186 (313)
T 1ogq_A 107 YITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRL 186 (313)
T ss_dssp EEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEE
T ss_pred ECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCee
Confidence 444444444555666677777777777777664444333 456777777777777666777777776 788888888888
Q ss_pred cCCCccccccCCCCcEEEccCCcccCCCCccccCCCCCCeEEecCCccccCcCccccccCCcEEEcccCcccccCChhhh
Q 040206 175 EGPLPPSLINCVNLQFLDVGNNNLSGPIPECLGNSTRLSFLDVGNNSLSGPIPECLANSTLEILDMRMNKFSGSLPQNIC 254 (347)
Q Consensus 175 ~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~ 254 (347)
+...|..+..++ |+.|++++|.+.+..+..+..+++|+.|++++|.+++..+.....++|++|++++|.+++.
T Consensus 187 ~~~~~~~~~~l~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~l~~L~~L~Ls~N~l~~~------ 259 (313)
T 1ogq_A 187 TGKIPPTFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGT------ 259 (313)
T ss_dssp EEECCGGGGGCC-CSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGGGCCCCTTCCEEECCSSCCEEC------
T ss_pred eccCChHHhCCc-ccEEECcCCcccCcCCHHHhcCCCCCEEECCCCceeeecCcccccCCCCEEECcCCcccCc------
Confidence 767777787776 8999999998887778888888999999999998886666655558899999999999865
Q ss_pred ccccccCCCcCccCCCCCcEEEccCCccCCccchhhhhccCCCEEEcccceee
Q 040206 255 KKLCFGPLPPSLVNCQYLEVLDVGNNQIDDTFLYWLDVLLQLQVLILRSNRFW 307 (347)
Q Consensus 255 ~~~~~~~l~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~l~L~~n~~~ 307 (347)
+|..+..+++|++|++++|.+++..|.. ..+++|+.+++++|+..
T Consensus 260 -------~p~~l~~l~~L~~L~Ls~N~l~~~ip~~-~~l~~L~~l~l~~N~~l 304 (313)
T 1ogq_A 260 -------LPQGLTQLKFLHSLNVSFNNLCGEIPQG-GNLQRFDVSAYANNKCL 304 (313)
T ss_dssp -------CCGGGGGCTTCCEEECCSSEEEEECCCS-TTGGGSCGGGTCSSSEE
T ss_pred -------CChHHhcCcCCCEEECcCCcccccCCCC-ccccccChHHhcCCCCc
Confidence 4556788899999999999998777765 78899999999999843
No 36
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.96 E-value=2.2e-28 Score=212.64 Aligned_cols=264 Identities=22% Similarity=0.180 Sum_probs=222.0
Q ss_pred CceEEEecCCCCCCCC-hhhhcCCCccEEeccCCcccccCChhhhhcCCCcccEEEcCCCcCCCCCCCCCCCCcEEEccC
Q 040206 1 KTIKTQVKTCNISEFP-DILRTQHQLEWLDLSKNQIRGRIPSWMWDIGVHTLQFLILSQNVLTSIDHLPWKNLQYLTLDS 79 (347)
Q Consensus 1 ~l~~l~l~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~L~~L~l~~ 79 (347)
+++.|++++|.+..++ .++.++++|++|++++|++++..|..+... ++|++|++++|.++.++...+++|++|++++
T Consensus 55 ~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l--~~L~~L~L~~n~l~~l~~~~~~~L~~L~l~~ 132 (332)
T 2ft3_A 55 DTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPL--RKLQKLYISKNHLVEIPPNLPSSLVELRIHD 132 (332)
T ss_dssp TCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTC--TTCCEEECCSSCCCSCCSSCCTTCCEEECCS
T ss_pred CCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCc--CCCCEEECCCCcCCccCccccccCCEEECCC
Confidence 4789999999999664 589999999999999999997667777654 9999999999999999887779999999999
Q ss_pred CCCCccCCC---CCCCccEEEcccCcccc--cCCccccCCCCccEEEcccCcccccCCcccCCccccEEECCCCcccccc
Q 040206 80 NLLQGSLPD---LPPHMVQLLISNNSLTG--EIPSSFCNLSSIQYLNLSNNSLSGQIPQCLGNSTLETLDLGMNNFQGSI 154 (347)
Q Consensus 80 ~~~~~~~~~---~~~~L~~L~l~~~~~~~--~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~ 154 (347)
|.+...... .+++|++|++++|.+.. ..+..+..+ +|+.|++++|.+...+... .++|++|++++|.+....
T Consensus 133 n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~~l~~~~--~~~L~~L~l~~n~i~~~~ 209 (332)
T 2ft3_A 133 NRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLTGIPKDL--PETLNELHLDHNKIQAIE 209 (332)
T ss_dssp SCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCSSCCSSS--CSSCSCCBCCSSCCCCCC
T ss_pred CccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCCCccCccc--cCCCCEEECCCCcCCccC
Confidence 999876553 35899999999999863 667778777 9999999999998654433 268999999999998777
Q ss_pred CccCCCCCCccEEEccCCcccCCCccccccCCCCcEEEccCCcccCCCCccccCCCCCCeEEecCCccccCcCcccc---
Q 040206 155 PQTNAKGCNLTSLRLSGNHLEGPLPPSLINCVNLQFLDVGNNNLSGPIPECLGNSTRLSFLDVGNNSLSGPIPECLA--- 231 (347)
Q Consensus 155 ~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~--- 231 (347)
+..+..+++|++|++++|.++...+..+..+++|+.|++++|.+. .+|..+..+++|+.|++++|.++......+.
T Consensus 210 ~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~ 288 (332)
T 2ft3_A 210 LEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVG 288 (332)
T ss_dssp TTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCC-BCCTTGGGCTTCCEEECCSSCCCBCCTTSSSCSS
T ss_pred HHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCe-ecChhhhcCccCCEEECCCCCCCccChhHccccc
Confidence 788999999999999999999777778999999999999999998 6778899999999999999999876655443
Q ss_pred ----ccCCcEEEcccCcccccCChhhhccccccCCCcCccCCCCCcEEEccCCc
Q 040206 232 ----NSTLEILDMRMNKFSGSLPQNICKKLCFGPLPPSLVNCQYLEVLDVGNNQ 281 (347)
Q Consensus 232 ----~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~ 281 (347)
...++.+++++|.+... +..+.+|..+++|+.+++++|+
T Consensus 289 ~~~~~~~l~~L~l~~N~~~~~-----------~~~~~~~~~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 289 FGVKRAYYNGISLFNNPVPYW-----------EVQPATFRCVTDRLAIQFGNYK 331 (332)
T ss_dssp CCSSSCCBSEEECCSSSSCGG-----------GSCGGGGTTBCCSTTEEC----
T ss_pred cccccccccceEeecCccccc-----------ccCcccccccchhhhhhccccc
Confidence 25689999999988731 1234568889999999999885
No 37
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.96 E-value=4.5e-28 Score=235.20 Aligned_cols=306 Identities=20% Similarity=0.206 Sum_probs=244.6
Q ss_pred eEEEecCCCCCCCChhhhcCCCccEEeccCCcccccCChhhhhcCCCcccEEEcCCCc-CCCCCC---CCCCCCcEEEcc
Q 040206 3 IKTQVKTCNISEFPDILRTQHQLEWLDLSKNQIRGRIPSWMWDIGVHTLQFLILSQNV-LTSIDH---LPWKNLQYLTLD 78 (347)
Q Consensus 3 ~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~-l~~~~~---~~~~~L~~L~l~ 78 (347)
+..+.++++++.+|. -.++++.|++++|.+++..+..+..+ ++|+.|++++|. +..++. ..+++|++|+++
T Consensus 7 ~~~dcs~~~L~~vP~---lp~~l~~LdLs~N~i~~i~~~~~~~l--~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls 81 (844)
T 3j0a_A 7 RIAFYRFCNLTQVPQ---VLNTTERLLLSFNYIRTVTASSFPFL--EQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLG 81 (844)
T ss_dssp EEEEESCCCSSCCCS---SCTTCCEEEEESCCCCEECSSSCSSC--CSCSEEEECTTCCCCEECTTTTSSCTTCCEEECT
T ss_pred eEEEccCCCCCCCCC---CCCCcCEEECCCCcCCccChhHCccc--ccCeEEeCCCCCCccccCHHHhcCCCCCCEEECC
Confidence 356788899999997 45899999999999997777777654 999999999994 444433 678999999999
Q ss_pred CCCCCccCCCC---CCCccEEEcccCcccccCCcc--ccCCCCccEEEcccCcccccCCc--ccCCccccEEECCCCccc
Q 040206 79 SNLLQGSLPDL---PPHMVQLLISNNSLTGEIPSS--FCNLSSIQYLNLSNNSLSGQIPQ--CLGNSTLETLDLGMNNFQ 151 (347)
Q Consensus 79 ~~~~~~~~~~~---~~~L~~L~l~~~~~~~~~~~~--~~~l~~L~~L~l~~~~~~~~~~~--~~~~~~L~~L~l~~~~~~ 151 (347)
+|.+....+.. +++|++|++++|.+.+..+.. +..+++|++|++++|.+....+. +..+++|++|++++|.+.
T Consensus 82 ~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~ 161 (844)
T 3j0a_A 82 SSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIF 161 (844)
T ss_dssp TCCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCC
T ss_pred CCcCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCC
Confidence 99998765544 489999999999998655544 88999999999999999866542 346789999999999988
Q ss_pred cccCccCCCC--CCccEEEccCCcccCCCccccccCCC------CcEEEccCCcccCCCCcccc----------------
Q 040206 152 GSIPQTNAKG--CNLTSLRLSGNHLEGPLPPSLINCVN------LQFLDVGNNNLSGPIPECLG---------------- 207 (347)
Q Consensus 152 ~~~~~~~~~~--~~L~~L~l~~~~~~~~~~~~l~~~~~------L~~L~l~~n~~~~~~~~~l~---------------- 207 (347)
...+..+..+ ++|+.|++++|.+....+..+..+++ |+.|++++|.+.+..+..+.
T Consensus 162 ~~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~ 241 (844)
T 3j0a_A 162 LVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHH 241 (844)
T ss_dssp CCCSGGGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSS
T ss_pred eeCHHHcccccCCccceEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccc
Confidence 7777777766 79999999999998777766666555 99999999976543333221
Q ss_pred --------------------C--CCCCCeEEecCCccccCcCccccc-cCCcEEEcccCcccccCChhhhccccccCCCc
Q 040206 208 --------------------N--STRLSFLDVGNNSLSGPIPECLAN-STLEILDMRMNKFSGSLPQNICKKLCFGPLPP 264 (347)
Q Consensus 208 --------------------~--~~~L~~L~l~~~~~~~~~~~~~~~-~~L~~L~L~~~~~~~~~~~~~~~~~~~~~l~~ 264 (347)
. .++|+.|++++|.+.+..+..+.. ++|+.|++++|.+.+. .+.
T Consensus 242 ~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~-------------~~~ 308 (844)
T 3j0a_A 242 IMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKI-------------ADE 308 (844)
T ss_dssp CCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEE-------------CTT
T ss_pred cccccccccccCCCChhhhhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCC-------------ChH
Confidence 1 267899999999887666555443 8899999999998864 344
Q ss_pred CccCCCCCcEEEccCCccCCccchhhhhccCCCEEEcccceeecccCCccccceeeeeeEee
Q 040206 265 SLVNCQYLEVLDVGNNQIDDTFLYWLDVLLQLQVLILRSNRFWGPIGKLRSRWSGHFIVRTV 326 (347)
Q Consensus 265 ~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~l~L~~n~~~~~~~~~~~~~~~~~~~~~~ 326 (347)
.+..+++|++|++++|.+++..+..+..+++|+.|++++|.+.+..+..+.....+..+...
T Consensus 309 ~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls 370 (844)
T 3j0a_A 309 AFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLR 370 (844)
T ss_dssp TTTTCSSCCEEEEESCCCSCCCSCSCSSCTTCCEEECCSCCCCCCCSSCSCSCCCCCEEEEE
T ss_pred HhcCCCCCCEEECCCCCCCccCHHHhcCCCCCCEEECCCCCCCccChhhhcCCCCCCEEECC
Confidence 67889999999999999998888889999999999999999987666666666666555443
No 38
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.96 E-value=1.8e-27 Score=211.59 Aligned_cols=266 Identities=21% Similarity=0.210 Sum_probs=204.3
Q ss_pred cCCCccEEeccCCcccccCChhhhhcCCCcccEEEcCCCcCCCCCC---CCCCCCcEEEccCCCCCccCCCC---CCCcc
Q 040206 21 TQHQLEWLDLSKNQIRGRIPSWMWDIGVHTLQFLILSQNVLTSIDH---LPWKNLQYLTLDSNLLQGSLPDL---PPHMV 94 (347)
Q Consensus 21 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~---~~~~~L~~L~l~~~~~~~~~~~~---~~~L~ 94 (347)
.+++++.++++++.+. .+|..++. .+++|++|++++|.++.++. ..+++|++|++++|.+....+.. +++|+
T Consensus 43 ~l~~l~~l~l~~~~l~-~l~~~~~~-~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 120 (390)
T 3o6n_A 43 TLNNQKIVTFKNSTMR-KLPAALLD-SFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLT 120 (390)
T ss_dssp GGCCCSEEEEESCEES-EECTHHHH-HCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred ccCCceEEEecCCchh-hCChhHhc-ccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCC
Confidence 5689999999999998 66766554 55999999999999998865 56789999999999998776554 58999
Q ss_pred EEEcccCcccccCCccccCCCCccEEEcccCcccccCCccc-CCccccEEECCCCccccccCccCCCCCCccEEEccCCc
Q 040206 95 QLLISNNSLTGEIPSSFCNLSSIQYLNLSNNSLSGQIPQCL-GNSTLETLDLGMNNFQGSIPQTNAKGCNLTSLRLSGNH 173 (347)
Q Consensus 95 ~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 173 (347)
+|++++|.+....+..+..+++|++|++++|.+....+..+ .+++|++|++++|.+.... +..+++|+++++++|.
T Consensus 121 ~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~---~~~l~~L~~L~l~~n~ 197 (390)
T 3o6n_A 121 VLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD---LSLIPSLFHANVSYNL 197 (390)
T ss_dssp EEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBCC---GGGCTTCSEEECCSSC
T ss_pred EEECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCccc---cccccccceeeccccc
Confidence 99999999996666667899999999999999987766645 5679999999999886432 3344555555555554
Q ss_pred ccC------------------CCccccccCCCCcEEEccCCcccCCCCccccCCCCCCeEEecCCccccCcCcccc-ccC
Q 040206 174 LEG------------------PLPPSLINCVNLQFLDVGNNNLSGPIPECLGNSTRLSFLDVGNNSLSGPIPECLA-NST 234 (347)
Q Consensus 174 ~~~------------------~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~-~~~ 234 (347)
++. ..+. ...++|+.|++++|.+.+. ..+..+++|+.|++++|.+.+..+..+. .++
T Consensus 198 l~~~~~~~~L~~L~l~~n~l~~~~~--~~~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~ 273 (390)
T 3o6n_A 198 LSTLAIPIAVEELDASHNSINVVRG--PVNVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQR 273 (390)
T ss_dssp CSEEECCSSCSEEECCSSCCCEEEC--CCCSSCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEESGGGTTCSS
T ss_pred ccccCCCCcceEEECCCCeeeeccc--cccccccEEECCCCCCccc--HHHcCCCCccEEECCCCcCCCcChhHcccccc
Confidence 431 1111 2235677777777777643 4677788888888888887766554443 378
Q ss_pred CcEEEcccCcccccCChhhhccccccCCCcCccCCCCCcEEEccCCccCCccchhhhhccCCCEEEcccceeeccc
Q 040206 235 LEILDMRMNKFSGSLPQNICKKLCFGPLPPSLVNCQYLEVLDVGNNQIDDTFLYWLDVLLQLQVLILRSNRFWGPI 310 (347)
Q Consensus 235 L~~L~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~l~L~~n~~~~~~ 310 (347)
|+.|++++|.+++ ++..+..+++|++|++++|.+.+ .+..+..+++|+.|++++|+++...
T Consensus 274 L~~L~L~~n~l~~--------------~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~L~~N~i~~~~ 334 (390)
T 3o6n_A 274 LERLYISNNRLVA--------------LNLYGQPIPTLKVLDLSHNHLLH-VERNQPQFDRLENLYLDHNSIVTLK 334 (390)
T ss_dssp CCEEECCSSCCCE--------------EECSSSCCTTCCEEECCSSCCCC-CGGGHHHHTTCSEEECCSSCCCCCC
T ss_pred CCEEECCCCcCcc--------------cCcccCCCCCCCEEECCCCccee-cCccccccCcCCEEECCCCccceeC
Confidence 8888888888773 44556778999999999999985 4555788999999999999997653
No 39
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.96 E-value=6.5e-27 Score=211.32 Aligned_cols=283 Identities=19% Similarity=0.154 Sum_probs=190.0
Q ss_pred CceEEEecCCCCCCCChhhhcCCCccEEeccCCcccccCChhhhhcCCCcccEEEcCCCcCCCCCCCCCCCCcEEEccCC
Q 040206 1 KTIKTQVKTCNISEFPDILRTQHQLEWLDLSKNQIRGRIPSWMWDIGVHTLQFLILSQNVLTSIDHLPWKNLQYLTLDSN 80 (347)
Q Consensus 1 ~l~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~L~~L~l~~~ 80 (347)
+|++|++++|.++.+| +.++++|++|++++|.+++ ++ +. .+++|++|++++|.++.++...+++|++|++++|
T Consensus 65 ~L~~L~Ls~n~l~~~~--~~~l~~L~~L~Ls~N~l~~-~~--~~--~l~~L~~L~L~~N~l~~l~~~~l~~L~~L~l~~N 137 (457)
T 3bz5_A 65 GLTKLICTSNNITTLD--LSQNTNLTYLACDSNKLTN-LD--VT--PLTKLTYLNCDTNKLTKLDVSQNPLLTYLNCARN 137 (457)
T ss_dssp TCSEEECCSSCCSCCC--CTTCTTCSEEECCSSCCSC-CC--CT--TCTTCCEEECCSSCCSCCCCTTCTTCCEEECTTS
T ss_pred CCCEEEccCCcCCeEc--cccCCCCCEEECcCCCCce-ee--cC--CCCcCCEEECCCCcCCeecCCCCCcCCEEECCCC
Confidence 4678888888888776 7888888888888888875 33 43 3488888888888888877777788888888888
Q ss_pred CCCccCCCCCCCccEEEcccCcccccCCccccCCCCccEEEcccCcccccCCcccCCccccEEECCCCccccccCccCCC
Q 040206 81 LLQGSLPDLPPHMVQLLISNNSLTGEIPSSFCNLSSIQYLNLSNNSLSGQIPQCLGNSTLETLDLGMNNFQGSIPQTNAK 160 (347)
Q Consensus 81 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~ 160 (347)
.+++.....+++|++|++++|...... .+..+++|+.|++++|.+.... ...+++|+.|++++|.+... .+..
T Consensus 138 ~l~~l~l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~l~--l~~l~~L~~L~l~~N~l~~~---~l~~ 210 (457)
T 3bz5_A 138 TLTEIDVSHNTQLTELDCHLNKKITKL--DVTPQTQLTTLDCSFNKITELD--VSQNKLLNRLNCDTNNITKL---DLNQ 210 (457)
T ss_dssp CCSCCCCTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEEECCSSCCCCCC--CTTCTTCCEEECCSSCCSCC---CCTT
T ss_pred ccceeccccCCcCCEEECCCCCccccc--ccccCCcCCEEECCCCccceec--cccCCCCCEEECcCCcCCee---cccc
Confidence 887765555677777777777433222 3556677777777777666532 33445666666666665532 2555
Q ss_pred CCCccEEEccCCcccCCCccccccCCCCcEEEccCCcccCCCCcc-----------------------------ccCCCC
Q 040206 161 GCNLTSLRLSGNHLEGPLPPSLINCVNLQFLDVGNNNLSGPIPEC-----------------------------LGNSTR 211 (347)
Q Consensus 161 ~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~-----------------------------l~~~~~ 211 (347)
+++|++|++++|+++. .| ++.+++|+.|++++|.+.+..+.. +..+++
T Consensus 211 l~~L~~L~Ls~N~l~~-ip--~~~l~~L~~L~l~~N~l~~~~~~~l~~L~~L~l~~n~L~~L~l~~n~~~~~~~~~~l~~ 287 (457)
T 3bz5_A 211 NIQLTFLDCSSNKLTE-ID--VTPLTQLTYFDCSVNPLTELDVSTLSKLTTLHCIQTDLLEIDLTHNTQLIYFQAEGCRK 287 (457)
T ss_dssp CTTCSEEECCSSCCSC-CC--CTTCTTCSEEECCSSCCSCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEECTTCTT
T ss_pred CCCCCEEECcCCcccc-cC--ccccCCCCEEEeeCCcCCCcCHHHCCCCCEEeccCCCCCEEECCCCccCCccccccccc
Confidence 5666666666666653 23 555566666666666554332221 234466
Q ss_pred CCeEEecCCccccCcCc---------cccccCCcEEEcccCcccccCChhhhccccccCCCcCccCCCCCcEEEccCCcc
Q 040206 212 LSFLDVGNNSLSGPIPE---------CLANSTLEILDMRMNKFSGSLPQNICKKLCFGPLPPSLVNCQYLEVLDVGNNQI 282 (347)
Q Consensus 212 L~~L~l~~~~~~~~~~~---------~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~i 282 (347)
|+.|++++|...+..+. ....++|+.|++++|.+++ ++ ++.|++|+.|++++|++
T Consensus 288 L~~L~Ls~n~~l~~l~~~~~~L~~L~l~~~~~L~~L~L~~N~l~~--------------l~--l~~l~~L~~L~l~~N~l 351 (457)
T 3bz5_A 288 IKELDVTHNTQLYLLDCQAAGITELDLSQNPKLVYLYLNNTELTE--------------LD--VSHNTKLKSLSCVNAHI 351 (457)
T ss_dssp CCCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEECTTCCCSC--------------CC--CTTCTTCSEEECCSSCC
T ss_pred CCEEECCCCcccceeccCCCcceEechhhcccCCEEECCCCcccc--------------cc--cccCCcCcEEECCCCCC
Confidence 77777777654332211 1122689999999999984 32 77899999999999999
Q ss_pred CCccc-hhh----------hhccCCCEEEcccceeecccCCcccc
Q 040206 283 DDTFL-YWL----------DVLLQLQVLILRSNRFWGPIGKLRSR 316 (347)
Q Consensus 283 ~~~~~-~~~----------~~l~~L~~l~L~~n~~~~~~~~~~~~ 316 (347)
++... ..+ +.+..|..+++++|.++|.+|..+..
T Consensus 352 ~~l~~L~~L~l~~n~l~g~~~~~~l~~l~l~~N~l~g~ip~~~~~ 396 (457)
T 3bz5_A 352 QDFSSVGKIPALNNNFEAEGQTITMPKETLTNNSLTIAVSPDLLD 396 (457)
T ss_dssp CBCTTGGGSSGGGTSEEEEEEEEECCCBCCBTTBEEEECCTTCBC
T ss_pred CCccccccccccCCcEEecceeeecCccccccCcEEEEcChhHhc
Confidence 86321 001 12356788999999999999876544
No 40
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.96 E-value=4.8e-29 Score=218.65 Aligned_cols=277 Identities=22% Similarity=0.146 Sum_probs=190.5
Q ss_pred cCCCccEEeccCCcccccCChhhhhcCCCcccEEEcCCCcCCCCCC---CCCCCCcEEEccCCCCCccCCCC---CCCcc
Q 040206 21 TQHQLEWLDLSKNQIRGRIPSWMWDIGVHTLQFLILSQNVLTSIDH---LPWKNLQYLTLDSNLLQGSLPDL---PPHMV 94 (347)
Q Consensus 21 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~---~~~~~L~~L~l~~~~~~~~~~~~---~~~L~ 94 (347)
.|+.....+.+++.++ .+|..+. ++|++|++++|.++.++. ..+++|++|++++|.+.+..+.. +++|+
T Consensus 29 ~C~~~~~c~~~~~~l~-~iP~~~~----~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 103 (353)
T 2z80_A 29 SCDRNGICKGSSGSLN-SIPSGLT----EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLE 103 (353)
T ss_dssp EECTTSEEECCSTTCS-SCCTTCC----TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCC
T ss_pred CCCCCeEeeCCCCCcc-ccccccc----ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCC
Confidence 4455555666666665 5554432 456666666666665544 34566666666666666543332 36677
Q ss_pred EEEcccCcccccCCccccCCCCccEEEcccCcccccCC-c-ccCCccccEEECCCC-ccccccCccCCCCCCccEEEccC
Q 040206 95 QLLISNNSLTGEIPSSFCNLSSIQYLNLSNNSLSGQIP-Q-CLGNSTLETLDLGMN-NFQGSIPQTNAKGCNLTSLRLSG 171 (347)
Q Consensus 95 ~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~-~~~~~~L~~L~l~~~-~~~~~~~~~~~~~~~L~~L~l~~ 171 (347)
+|++++|.+....+..+..+++|++|++++|.+..... . +..+++|++|++++| .+....+..+..+++|++|++++
T Consensus 104 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~ 183 (353)
T 2z80_A 104 HLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDA 183 (353)
T ss_dssp EEECCSSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEE
T ss_pred EEECCCCcCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCC
Confidence 77777777765544457777788888888777775544 2 235667888888777 35545566777788888888888
Q ss_pred CcccCCCccccccCCCCcEEEccCCcccCCCCccccCCCCCCeEEecCCccccCcCcccc----ccCCcEEEcccCcccc
Q 040206 172 NHLEGPLPPSLINCVNLQFLDVGNNNLSGPIPECLGNSTRLSFLDVGNNSLSGPIPECLA----NSTLEILDMRMNKFSG 247 (347)
Q Consensus 172 ~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~----~~~L~~L~L~~~~~~~ 247 (347)
|.++...+..+..+++|++|++++|.+.......+..+++|+.|++++|.+++.....+. ...++.++++++.+.+
T Consensus 184 n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~ 263 (353)
T 2z80_A 184 SDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITD 263 (353)
T ss_dssp TTCCEECTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCH
T ss_pred CCcCccCHHHHhccccCCeecCCCCccccchhhhhhhcccccEEECCCCccccccccccccccccchhhccccccccccC
Confidence 887766677777888888888888877643333445577888888888887754433222 2578888888888775
Q ss_pred cCChhhhccccccCCCcCccCCCCCcEEEccCCccCCccchhhhhccCCCEEEcccceeecccC
Q 040206 248 SLPQNICKKLCFGPLPPSLVNCQYLEVLDVGNNQIDDTFLYWLDVLLQLQVLILRSNRFWGPIG 311 (347)
Q Consensus 248 ~~~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~l~L~~n~~~~~~~ 311 (347)
.... .+|..+..+++|++|++++|.++..+...+..+++|+.|++++|++.+.+|
T Consensus 264 ~~l~---------~l~~~l~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~~~~~~~ 318 (353)
T 2z80_A 264 ESLF---------QVMKLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 318 (353)
T ss_dssp HHHH---------HHHHHHHTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred cchh---------hhHHHHhcccCCCEEECCCCCCCccCHHHHhcCCCCCEEEeeCCCccCcCC
Confidence 3211 345567889999999999999997666667899999999999999998876
No 41
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.96 E-value=7.2e-27 Score=220.48 Aligned_cols=126 Identities=21% Similarity=0.209 Sum_probs=98.5
Q ss_pred ceEEEecCCCCCCCC-hhhhcCCCccEEeccCCcccccCChhhhhcCCCcccEEEcCCCcCCCCCC---CCCCCCcEEEc
Q 040206 2 TIKTQVKTCNISEFP-DILRTQHQLEWLDLSKNQIRGRIPSWMWDIGVHTLQFLILSQNVLTSIDH---LPWKNLQYLTL 77 (347)
Q Consensus 2 l~~l~l~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~---~~~~~L~~L~l 77 (347)
+++|+|++|.++.+| .+|.++++|++|++++|++++..+..|. ++++|++|++++|.++.++. ..+++|++|++
T Consensus 54 ~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~--~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~L 131 (635)
T 4g8a_A 54 TKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQ--SLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA 131 (635)
T ss_dssp CCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTT--TCTTCCEEECTTCCCCEECGGGGTTCTTCCEEEC
T ss_pred CCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhc--CCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEEC
Confidence 688999999999776 4789999999999999998844444454 44899999999998888875 56788999999
Q ss_pred cCCCCCccCCC---CCCCccEEEcccCccccc-CCccccCCCCccEEEcccCcccc
Q 040206 78 DSNLLQGSLPD---LPPHMVQLLISNNSLTGE-IPSSFCNLSSIQYLNLSNNSLSG 129 (347)
Q Consensus 78 ~~~~~~~~~~~---~~~~L~~L~l~~~~~~~~-~~~~~~~l~~L~~L~l~~~~~~~ 129 (347)
++|.++..... .+++|++|++++|.+... .+..+..+++|++|++++|.+..
T Consensus 132 s~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~ 187 (635)
T 4g8a_A 132 VETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS 187 (635)
T ss_dssp TTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCE
T ss_pred CCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccccc
Confidence 99888765543 347888999988888743 46677788888888888876543
No 42
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.96 E-value=7.3e-27 Score=210.80 Aligned_cols=271 Identities=25% Similarity=0.325 Sum_probs=132.9
Q ss_pred ceEEEecCCCCCCCChhhhcCCCccEEeccCCcccccCChhhhhcCCCcccEEEcCCCcCCCCCC-CCCCCCcEEEccCC
Q 040206 2 TIKTQVKTCNISEFPDILRTQHQLEWLDLSKNQIRGRIPSWMWDIGVHTLQFLILSQNVLTSIDH-LPWKNLQYLTLDSN 80 (347)
Q Consensus 2 l~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~-~~~~~L~~L~l~~~ 80 (347)
|++|++++|.++.+| .+.++++|++|++++|+++ .+|..+ ++|++|++++|.++.++. ..+++|++|++++|
T Consensus 133 L~~L~L~~n~l~~lp-~~~~l~~L~~L~l~~N~l~-~lp~~~-----~~L~~L~L~~n~l~~l~~~~~l~~L~~L~l~~N 205 (454)
T 1jl5_A 133 LEYLGVSNNQLEKLP-ELQNSSFLKIIDVDNNSLK-KLPDLP-----PSLEFIAAGNNQLEELPELQNLPFLTAIYADNN 205 (454)
T ss_dssp CCEEECCSSCCSSCC-CCTTCTTCCEEECCSSCCS-CCCCCC-----TTCCEEECCSSCCSSCCCCTTCTTCCEEECCSS
T ss_pred CCEEECcCCCCCCCc-ccCCCCCCCEEECCCCcCc-ccCCCc-----ccccEEECcCCcCCcCccccCCCCCCEEECCCC
Confidence 444555555555444 2455555555555555544 233221 345555555555554433 34455555555555
Q ss_pred CCCccCCCCCCCccEEEcccCcccccCCccccCCCCccEEEcccCcccccCCcccCCccccEEECCCCccccccCccCCC
Q 040206 81 LLQGSLPDLPPHMVQLLISNNSLTGEIPSSFCNLSSIQYLNLSNNSLSGQIPQCLGNSTLETLDLGMNNFQGSIPQTNAK 160 (347)
Q Consensus 81 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~ 160 (347)
.+.+ .+..+++|++|++++|.+. ..+ .+..+++|++|++++|.+...+. ..++|+.|++++|.+.+ .|..
T Consensus 206 ~l~~-l~~~~~~L~~L~l~~n~l~-~lp-~~~~l~~L~~L~l~~N~l~~l~~---~~~~L~~L~l~~N~l~~-l~~~--- 275 (454)
T 1jl5_A 206 SLKK-LPDLPLSLESIVAGNNILE-ELP-ELQNLPFLTTIYADNNLLKTLPD---LPPSLEALNVRDNYLTD-LPEL--- 275 (454)
T ss_dssp CCSS-CCCCCTTCCEEECCSSCCS-SCC-CCTTCTTCCEEECCSSCCSSCCS---CCTTCCEEECCSSCCSC-CCCC---
T ss_pred cCCc-CCCCcCcccEEECcCCcCC-ccc-ccCCCCCCCEEECCCCcCCcccc---cccccCEEECCCCcccc-cCcc---
Confidence 5543 2223345566666666555 333 25556666666666665553221 12456666666665542 3322
Q ss_pred CCCccEEEccCCcccCCCccccccCCCCcEEEccCCcccCCCCccccCC-CCCCeEEecCCccccCcCccccccCCcEEE
Q 040206 161 GCNLTSLRLSGNHLEGPLPPSLINCVNLQFLDVGNNNLSGPIPECLGNS-TRLSFLDVGNNSLSGPIPECLANSTLEILD 239 (347)
Q Consensus 161 ~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~~-~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~ 239 (347)
+++|+++++++|.++.. +. ..++|+.|++++|.+.+ +..+ ++|+.|++++|.+++. +.. .++|+.|+
T Consensus 276 ~~~L~~L~ls~N~l~~l-~~---~~~~L~~L~l~~N~l~~-----i~~~~~~L~~L~Ls~N~l~~l-p~~--~~~L~~L~ 343 (454)
T 1jl5_A 276 PQSLTFLDVSENIFSGL-SE---LPPNLYYLNASSNEIRS-----LCDLPPSLEELNVSNNKLIEL-PAL--PPRLERLI 343 (454)
T ss_dssp CTTCCEEECCSSCCSEE-SC---CCTTCCEEECCSSCCSE-----ECCCCTTCCEEECCSSCCSCC-CCC--CTTCCEEE
T ss_pred cCcCCEEECcCCccCcc-cC---cCCcCCEEECcCCcCCc-----ccCCcCcCCEEECCCCccccc-ccc--CCcCCEEE
Confidence 24566666666655421 11 12456666666666552 1122 4677777777776642 222 35777777
Q ss_pred cccCcccccCChhhhccccccCCCcCccCCCCCcEEEccCCccCC--ccchhhhhc-------------cCCCEEEcccc
Q 040206 240 MRMNKFSGSLPQNICKKLCFGPLPPSLVNCQYLEVLDVGNNQIDD--TFLYWLDVL-------------LQLQVLILRSN 304 (347)
Q Consensus 240 L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~i~~--~~~~~~~~l-------------~~L~~l~L~~n 304 (347)
+++|.++ .+|. .+++|++|++++|.+.+ ..|..+..+ ++|+.|++++|
T Consensus 344 L~~N~l~--------------~lp~---~l~~L~~L~L~~N~l~~l~~ip~~l~~L~~n~~~~~i~~~~~~L~~L~ls~N 406 (454)
T 1jl5_A 344 ASFNHLA--------------EVPE---LPQNLKQLHVEYNPLREFPDIPESVEDLRMNSHLAEVPELPQNLKQLHVETN 406 (454)
T ss_dssp CCSSCCS--------------CCCC---CCTTCCEEECCSSCCSSCCCCCTTCCEEECCC--------------------
T ss_pred CCCCccc--------------cccc---hhhhccEEECCCCCCCcCCCChHHHHhhhhcccccccccccCcCCEEECCCC
Confidence 7777776 3454 36789999999999887 556666666 78999999999
Q ss_pred eeec--ccCCccccce
Q 040206 305 RFWG--PIGKLRSRWS 318 (347)
Q Consensus 305 ~~~~--~~~~~~~~~~ 318 (347)
++.+ .+|..+..+.
T Consensus 407 ~l~~~~~iP~sl~~L~ 422 (454)
T 1jl5_A 407 PLREFPDIPESVEDLR 422 (454)
T ss_dssp ----------------
T ss_pred cCCccccchhhHhhee
Confidence 9987 7776655543
No 43
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.96 E-value=8e-28 Score=223.30 Aligned_cols=191 Identities=20% Similarity=0.198 Sum_probs=151.3
Q ss_pred EEecCCCCCCCChhhhcCCCccEEeccCCcccccCChhhhhcCCCcccEEEcCCCcCCCCCC---CCCCCCcEEEccCCC
Q 040206 5 TQVKTCNISEFPDILRTQHQLEWLDLSKNQIRGRIPSWMWDIGVHTLQFLILSQNVLTSIDH---LPWKNLQYLTLDSNL 81 (347)
Q Consensus 5 l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~---~~~~~L~~L~l~~~~ 81 (347)
.+.+++.++.+|..+. ++|++|++++|.+++..+..+.. +++|++|++++|.++.++. ..+++|++|++++|.
T Consensus 10 c~~~~~~l~~ip~~~~--~~L~~L~Ls~n~l~~~~~~~~~~--l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~ 85 (549)
T 2z81_A 10 CDGRSRSFTSIPSGLT--AAMKSLDLSFNKITYIGHGDLRA--CANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNH 85 (549)
T ss_dssp EECTTSCCSSCCSCCC--TTCCEEECCSSCCCEECSSTTSS--CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSC
T ss_pred EECCCCccccccccCC--CCccEEECcCCccCccChhhhhc--CCcccEEECCCCCcCccChhhccccccCCEEECCCCc
Confidence 5677888999998665 89999999999999766777764 4999999999999998875 567899999999999
Q ss_pred CCccCCC---CCCCccEEEcccCccccc-CCccccCCCCccEEEcccCc-ccccCCc-ccCCccccEEECCCCccccccC
Q 040206 82 LQGSLPD---LPPHMVQLLISNNSLTGE-IPSSFCNLSSIQYLNLSNNS-LSGQIPQ-CLGNSTLETLDLGMNNFQGSIP 155 (347)
Q Consensus 82 ~~~~~~~---~~~~L~~L~l~~~~~~~~-~~~~~~~l~~L~~L~l~~~~-~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~ 155 (347)
+.+..+. .+++|++|++++|.+... .+..+.++++|++|++++|. +....+. +..+++|++|++++|.+....|
T Consensus 86 l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 165 (549)
T 2z81_A 86 LSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQS 165 (549)
T ss_dssp CCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECT
T ss_pred cCccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccCh
Confidence 9876643 458999999999999853 45678999999999999998 4444433 3467799999999999987888
Q ss_pred ccCCCCCCccEEEccCCcccCCCccc-cccCCCCcEEEccCCcccC
Q 040206 156 QTNAKGCNLTSLRLSGNHLEGPLPPS-LINCVNLQFLDVGNNNLSG 200 (347)
Q Consensus 156 ~~~~~~~~L~~L~l~~~~~~~~~~~~-l~~~~~L~~L~l~~n~~~~ 200 (347)
..+..+++|++++++++... ..+.. +..+++|+.|++++|.+.+
T Consensus 166 ~~l~~l~~L~~L~l~~n~~~-~~~~~~~~~l~~L~~L~L~~n~l~~ 210 (549)
T 2z81_A 166 QSLKSIRDIHHLTLHLSESA-FLLEIFADILSSVRYLELRDTNLAR 210 (549)
T ss_dssp TTTTTCSEEEEEEEECSBST-THHHHHHHSTTTBSEEEEESCBCTT
T ss_pred hhhhccccCceEecccCccc-ccchhhHhhcccccEEEccCCcccc
Confidence 88888888888888777665 22222 2446667777777666553
No 44
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.95 E-value=8.6e-27 Score=218.04 Aligned_cols=266 Identities=21% Similarity=0.210 Sum_probs=206.0
Q ss_pred cCCCccEEeccCCcccccCChhhhhcCCCcccEEEcCCCcCCCCCC---CCCCCCcEEEccCCCCCccCCCC---CCCcc
Q 040206 21 TQHQLEWLDLSKNQIRGRIPSWMWDIGVHTLQFLILSQNVLTSIDH---LPWKNLQYLTLDSNLLQGSLPDL---PPHMV 94 (347)
Q Consensus 21 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~---~~~~~L~~L~l~~~~~~~~~~~~---~~~L~ 94 (347)
.+++++.++++++.+. .+|..++. .+++|+.|++++|.++.++. ..+++|++|++++|.+....+.. +++|+
T Consensus 49 ~l~~l~~l~l~~~~l~-~lp~~~~~-~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 126 (597)
T 3oja_B 49 TLNNQKIVTFKNSTMR-KLPAALLD-SFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLT 126 (597)
T ss_dssp GGCCCSEEEESSCEES-EECTHHHH-HCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred cCCCceEEEeeCCCCC-CcCHHHHc-cCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCC
Confidence 4688999999999998 56666554 55999999999999998865 56789999999999998876544 58999
Q ss_pred EEEcccCcccccCCccccCCCCccEEEcccCcccccCCccc-CCccccEEECCCCccccccCccCCCCCCccEEEccCCc
Q 040206 95 QLLISNNSLTGEIPSSFCNLSSIQYLNLSNNSLSGQIPQCL-GNSTLETLDLGMNNFQGSIPQTNAKGCNLTSLRLSGNH 173 (347)
Q Consensus 95 ~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 173 (347)
+|++++|.+....+..|..+++|++|++++|.+....+..+ .+++|+.|++++|.+.... +..+++|+.+++++|.
T Consensus 127 ~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~---~~~l~~L~~L~l~~n~ 203 (597)
T 3oja_B 127 VLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD---LSLIPSLFHANVSYNL 203 (597)
T ss_dssp EEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCC---GGGCTTCSEEECCSSC
T ss_pred EEEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcC---hhhhhhhhhhhcccCc
Confidence 99999999997666678999999999999999988777655 5679999999999887432 3344556666665554
Q ss_pred ccC------------------CCccccccCCCCcEEEccCCcccCCCCccccCCCCCCeEEecCCccccCcCcccc-ccC
Q 040206 174 LEG------------------PLPPSLINCVNLQFLDVGNNNLSGPIPECLGNSTRLSFLDVGNNSLSGPIPECLA-NST 234 (347)
Q Consensus 174 ~~~------------------~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~-~~~ 234 (347)
++. ..+. ...++|+.|++++|.+.+ +..+..+++|+.|++++|.+.+..+..+. .++
T Consensus 204 l~~l~~~~~L~~L~ls~n~l~~~~~--~~~~~L~~L~L~~n~l~~--~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~ 279 (597)
T 3oja_B 204 LSTLAIPIAVEELDASHNSINVVRG--PVNVELTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQR 279 (597)
T ss_dssp CSEEECCTTCSEEECCSSCCCEEEC--SCCSCCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCEEESGGGTTCSS
T ss_pred cccccCCchhheeeccCCccccccc--ccCCCCCEEECCCCCCCC--ChhhccCCCCCEEECCCCccCCCCHHHhcCccC
Confidence 431 1111 112467777777777764 35677788888888888887766555443 377
Q ss_pred CcEEEcccCcccccCChhhhccccccCCCcCccCCCCCcEEEccCCccCCccchhhhhccCCCEEEcccceeeccc
Q 040206 235 LEILDMRMNKFSGSLPQNICKKLCFGPLPPSLVNCQYLEVLDVGNNQIDDTFLYWLDVLLQLQVLILRSNRFWGPI 310 (347)
Q Consensus 235 L~~L~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~l~L~~n~~~~~~ 310 (347)
|+.|++++|.+++ +|..+..+++|+.|+|++|.+.. .+..+..+++|+.|++++|++.+..
T Consensus 280 L~~L~Ls~N~l~~--------------l~~~~~~l~~L~~L~Ls~N~l~~-i~~~~~~l~~L~~L~L~~N~l~~~~ 340 (597)
T 3oja_B 280 LERLYISNNRLVA--------------LNLYGQPIPTLKVLDLSHNHLLH-VERNQPQFDRLENLYLDHNSIVTLK 340 (597)
T ss_dssp CCEEECTTSCCCE--------------EECSSSCCTTCCEEECCSSCCCC-CGGGHHHHTTCSEEECCSSCCCCCC
T ss_pred CCEEECCCCCCCC--------------CCcccccCCCCcEEECCCCCCCc-cCcccccCCCCCEEECCCCCCCCcC
Confidence 8888888888774 45566778999999999999985 5556788999999999999998754
No 45
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.95 E-value=1.1e-26 Score=215.94 Aligned_cols=268 Identities=26% Similarity=0.223 Sum_probs=221.4
Q ss_pred CceEEEecCCCCCCCChhhhcCCCccEEeccCCcccccCChhhhhcCCCcccEEEcCCCcCCCCCCCCCCCCcEEEccCC
Q 040206 1 KTIKTQVKTCNISEFPDILRTQHQLEWLDLSKNQIRGRIPSWMWDIGVHTLQFLILSQNVLTSIDHLPWKNLQYLTLDSN 80 (347)
Q Consensus 1 ~l~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~L~~L~l~~~ 80 (347)
+++.|+++++.++.+|..+. ++|+.|++++|+++ .+|. .+++|++|++++|.++.++. .+++|++|++++|
T Consensus 41 ~l~~L~ls~n~L~~lp~~l~--~~L~~L~L~~N~l~-~lp~-----~l~~L~~L~Ls~N~l~~lp~-~l~~L~~L~Ls~N 111 (622)
T 3g06_A 41 GNAVLNVGESGLTTLPDCLP--AHITTLVIPDNNLT-SLPA-----LPPELRTLEVSGNQLTSLPV-LPPGLLELSIFSN 111 (622)
T ss_dssp CCCEEECCSSCCSCCCSCCC--TTCSEEEECSCCCS-CCCC-----CCTTCCEEEECSCCCSCCCC-CCTTCCEEEECSC
T ss_pred CCcEEEecCCCcCccChhhC--CCCcEEEecCCCCC-CCCC-----cCCCCCEEEcCCCcCCcCCC-CCCCCCEEECcCC
Confidence 36789999999999998665 89999999999998 6665 23899999999999999888 7899999999999
Q ss_pred CCCccCCCCCCCccEEEcccCcccccCCccccCCCCccEEEcccCcccccCCcccCCccccEEECCCCccccccCccCCC
Q 040206 81 LLQGSLPDLPPHMVQLLISNNSLTGEIPSSFCNLSSIQYLNLSNNSLSGQIPQCLGNSTLETLDLGMNNFQGSIPQTNAK 160 (347)
Q Consensus 81 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~ 160 (347)
.++.... .+++|+.|++++|.++. ++. .+++|++|++++|.+...+. ...+|+.|++++|.+. .+| ..
T Consensus 112 ~l~~l~~-~l~~L~~L~L~~N~l~~-lp~---~l~~L~~L~Ls~N~l~~l~~---~~~~L~~L~L~~N~l~-~l~---~~ 179 (622)
T 3g06_A 112 PLTHLPA-LPSGLCKLWIFGNQLTS-LPV---LPPGLQELSVSDNQLASLPA---LPSELCKLWAYNNQLT-SLP---ML 179 (622)
T ss_dssp CCCCCCC-CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSCCCC---CCTTCCEEECCSSCCS-CCC---CC
T ss_pred cCCCCCC-CCCCcCEEECCCCCCCc-CCC---CCCCCCEEECcCCcCCCcCC---ccCCCCEEECCCCCCC-CCc---cc
Confidence 9987655 77999999999999985 443 34899999999999886432 3468999999999987 455 45
Q ss_pred CCCccEEEccCCcccCCCccccccCCCCcEEEccCCcccCCCCccccCCCCCCeEEecCCccccCcCccccccCCcEEEc
Q 040206 161 GCNLTSLRLSGNHLEGPLPPSLINCVNLQFLDVGNNNLSGPIPECLGNSTRLSFLDVGNNSLSGPIPECLANSTLEILDM 240 (347)
Q Consensus 161 ~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~L 240 (347)
+++|+.|++++|.++. ++. ..++|+.|++++|.+.. ++. .+++|+.|++++|.+++.. ...++|+.|++
T Consensus 180 ~~~L~~L~Ls~N~l~~-l~~---~~~~L~~L~L~~N~l~~-l~~---~~~~L~~L~Ls~N~L~~lp---~~l~~L~~L~L 248 (622)
T 3g06_A 180 PSGLQELSVSDNQLAS-LPT---LPSELYKLWAYNNRLTS-LPA---LPSGLKELIVSGNRLTSLP---VLPSELKELMV 248 (622)
T ss_dssp CTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSS-CCC---CCTTCCEEECCSSCCSCCC---CCCTTCCEEEC
T ss_pred CCCCcEEECCCCCCCC-CCC---ccchhhEEECcCCcccc-cCC---CCCCCCEEEccCCccCcCC---CCCCcCcEEEC
Confidence 6899999999999884 333 34789999999999884 343 3578999999999998643 23379999999
Q ss_pred ccCcccccCChhhhccccccCCCcCccCCCCCcEEEccCCccCCccchhhhhccCCCEEEcccceeecccCCccccce
Q 040206 241 RMNKFSGSLPQNICKKLCFGPLPPSLVNCQYLEVLDVGNNQIDDTFLYWLDVLLQLQVLILRSNRFWGPIGKLRSRWS 318 (347)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~l~L~~n~~~~~~~~~~~~~~ 318 (347)
++|.++ .+|. .+++|+.|++++|.++. .|..+..+++|+.|+|++|++.+..|..+..+.
T Consensus 249 s~N~L~--------------~lp~---~~~~L~~L~Ls~N~L~~-lp~~l~~l~~L~~L~L~~N~l~~~~~~~l~~L~ 308 (622)
T 3g06_A 249 SGNRLT--------------SLPM---LPSGLLSLSVYRNQLTR-LPESLIHLSSETTVNLEGNPLSERTLQALREIT 308 (622)
T ss_dssp CSSCCS--------------CCCC---CCTTCCEEECCSSCCCS-CCGGGGGSCTTCEEECCSCCCCHHHHHHHHHHH
T ss_pred CCCCCC--------------cCCc---ccccCcEEeCCCCCCCc-CCHHHhhccccCEEEecCCCCCCcCHHHHHhcc
Confidence 999998 3554 56889999999999985 566789999999999999999988776555443
No 46
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.95 E-value=2.3e-27 Score=203.92 Aligned_cols=218 Identities=20% Similarity=0.277 Sum_probs=115.8
Q ss_pred EEEecCCCCCCCChhhhcCCCccEEeccCCcccccCChhhhhcCCCcccEEEcCCCcCCCCCC-----CCCCCCcEEEcc
Q 040206 4 KTQVKTCNISEFPDILRTQHQLEWLDLSKNQIRGRIPSWMWDIGVHTLQFLILSQNVLTSIDH-----LPWKNLQYLTLD 78 (347)
Q Consensus 4 ~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~-----~~~~~L~~L~l~ 78 (347)
.++.+++.++.+|..+. ++|++|++++|.+. .++...+. .+++|++|++++|.++.+.. ..+++
T Consensus 11 ~l~c~~~~l~~ip~~~~--~~l~~L~L~~n~l~-~i~~~~~~-~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~------- 79 (306)
T 2z66_A 11 EIRCNSKGLTSVPTGIP--SSATRLELESNKLQ-SLPHGVFD-KLTQLTKLSLSSNGLSFKGCCSQSDFGTTS------- 79 (306)
T ss_dssp EEECCSSCCSSCCSCCC--TTCCEEECCSSCCC-CCCTTTTT-TCTTCSEEECCSSCCCEEEEEEHHHHSCSC-------
T ss_pred EEEcCCCCcccCCCCCC--CCCCEEECCCCccC-ccCHhHhh-ccccCCEEECCCCccCcccCcccccccccc-------
Confidence 45555666666665333 46666666666665 44443322 33566666666555543311 22333
Q ss_pred CCCCCccCCCCCCCccEEEcccCcccccCCccccCCCCccEEEcccCcccccCC--cccCCccccEEECCCCccccccCc
Q 040206 79 SNLLQGSLPDLPPHMVQLLISNNSLTGEIPSSFCNLSSIQYLNLSNNSLSGQIP--QCLGNSTLETLDLGMNNFQGSIPQ 156 (347)
Q Consensus 79 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~~~~ 156 (347)
|++|++++|.+. ..+..+..+++|++|++++|.+....+ ....+++|++|++++|.+....+.
T Consensus 80 --------------L~~L~Ls~n~i~-~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~ 144 (306)
T 2z66_A 80 --------------LKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNG 144 (306)
T ss_dssp --------------CCEEECCSCSEE-EEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTT
T ss_pred --------------cCEEECCCCccc-cChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchh
Confidence 444444444443 233445666677777777666654433 222445666666666665545555
Q ss_pred cCCCCCCccEEEccCCcccC-CCccccccCCCCcEEEccCCcccCCCCccccCCCCCCeEEecCCccccCcCcccc-ccC
Q 040206 157 TNAKGCNLTSLRLSGNHLEG-PLPPSLINCVNLQFLDVGNNNLSGPIPECLGNSTRLSFLDVGNNSLSGPIPECLA-NST 234 (347)
Q Consensus 157 ~~~~~~~L~~L~l~~~~~~~-~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~-~~~ 234 (347)
.+..+++|++|++++|.+.. ..+..+..+++|+.|++++|.+.+..+..+..+++|+.|++++|.+++..+..+. .++
T Consensus 145 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~ 224 (306)
T 2z66_A 145 IFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNS 224 (306)
T ss_dssp TTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTT
T ss_pred hcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCccc
Confidence 55556666666666665543 3445555666666666666666554455555566666666666655543332222 245
Q ss_pred CcEEEcccCcccc
Q 040206 235 LEILDMRMNKFSG 247 (347)
Q Consensus 235 L~~L~L~~~~~~~ 247 (347)
|+.|++++|.+.+
T Consensus 225 L~~L~L~~N~l~~ 237 (306)
T 2z66_A 225 LQVLDYSLNHIMT 237 (306)
T ss_dssp CCEEECTTSCCCB
T ss_pred CCEeECCCCCCcc
Confidence 5555555555543
No 47
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.95 E-value=1.6e-27 Score=205.22 Aligned_cols=236 Identities=27% Similarity=0.394 Sum_probs=201.8
Q ss_pred CCCcEEEccCCCCCc--cCCCC---CCCccEEEccc-CcccccCCccccCCCCccEEEcccCcccccCCccc-CCccccE
Q 040206 70 KNLQYLTLDSNLLQG--SLPDL---PPHMVQLLISN-NSLTGEIPSSFCNLSSIQYLNLSNNSLSGQIPQCL-GNSTLET 142 (347)
Q Consensus 70 ~~L~~L~l~~~~~~~--~~~~~---~~~L~~L~l~~-~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~-~~~~L~~ 142 (347)
.+++.|+++++.+.+ ..+.. +++|++|++++ |.+.+..|..+..+++|++|++++|.+.+..+..+ .+++|++
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~ 129 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVT 129 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCE
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCE
Confidence 467888888888775 33332 37899999985 88887889999999999999999999986555544 6789999
Q ss_pred EECCCCccccccCccCCCCCCccEEEccCCcccCCCccccccCC-CCcEEEccCCcccCCCCccccCCCCCCeEEecCCc
Q 040206 143 LDLGMNNFQGSIPQTNAKGCNLTSLRLSGNHLEGPLPPSLINCV-NLQFLDVGNNNLSGPIPECLGNSTRLSFLDVGNNS 221 (347)
Q Consensus 143 L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~-~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~~~ 221 (347)
|++++|.+....|..+..+++|++|++++|.++...|..+..++ +|+.|++++|.+.+..|..+..+. |+.|++++|.
T Consensus 130 L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~ 208 (313)
T 1ogq_A 130 LDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNM 208 (313)
T ss_dssp EECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSE
T ss_pred EeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCc
Confidence 99999999888899999999999999999999877888899988 999999999999888888998887 9999999999
Q ss_pred cccCcCccccc-cCCcEEEcccCcccccCChhhhccccccCCCcCccCCCCCcEEEccCCccCCccchhhhhccCCCEEE
Q 040206 222 LSGPIPECLAN-STLEILDMRMNKFSGSLPQNICKKLCFGPLPPSLVNCQYLEVLDVGNNQIDDTFLYWLDVLLQLQVLI 300 (347)
Q Consensus 222 ~~~~~~~~~~~-~~L~~L~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~l~ 300 (347)
+.+..+..+.. ++|+.|++++|.+++.++ .+..+++|++|++++|.+++..+..+..+++|+.|+
T Consensus 209 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~--------------~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ 274 (313)
T 1ogq_A 209 LEGDASVLFGSDKNTQKIHLAKNSLAFDLG--------------KVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLN 274 (313)
T ss_dssp EEECCGGGCCTTSCCSEEECCSSEECCBGG--------------GCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEE
T ss_pred ccCcCCHHHhcCCCCCEEECCCCceeeecC--------------cccccCCCCEEECcCCcccCcCChHHhcCcCCCEEE
Confidence 98776665544 899999999999985422 366789999999999999988888899999999999
Q ss_pred cccceeecccCCccccceeee
Q 040206 301 LRSNRFWGPIGKLRSRWSGHF 321 (347)
Q Consensus 301 L~~n~~~~~~~~~~~~~~~~~ 321 (347)
+++|++++.+|.. ..+..+.
T Consensus 275 Ls~N~l~~~ip~~-~~l~~L~ 294 (313)
T 1ogq_A 275 VSFNNLCGEIPQG-GNLQRFD 294 (313)
T ss_dssp CCSSEEEEECCCS-TTGGGSC
T ss_pred CcCCcccccCCCC-ccccccC
Confidence 9999999999986 4554443
No 48
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.95 E-value=4.2e-27 Score=202.21 Aligned_cols=247 Identities=24% Similarity=0.225 Sum_probs=195.8
Q ss_pred cEEEcCCCcCCCCCCCCCCCCcEEEccCCCCCccCCC---CCCCccEEEcccCccccc--CCccccCCCCccEEEcccCc
Q 040206 52 QFLILSQNVLTSIDHLPWKNLQYLTLDSNLLQGSLPD---LPPHMVQLLISNNSLTGE--IPSSFCNLSSIQYLNLSNNS 126 (347)
Q Consensus 52 ~~L~l~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~---~~~~L~~L~l~~~~~~~~--~~~~~~~l~~L~~L~l~~~~ 126 (347)
+.++++++.++.++....++|++|++++|.+...... .+++|++|++++|.+... .+..+..+++|++|++++|.
T Consensus 10 ~~l~c~~~~l~~ip~~~~~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~ 89 (306)
T 2z66_A 10 TEIRCNSKGLTSVPTGIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNG 89 (306)
T ss_dssp TEEECCSSCCSSCCSCCCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCS
T ss_pred CEEEcCCCCcccCCCCCCCCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCc
Confidence 3455555555555554445666666666666544432 236677777777766522 24556678999999999999
Q ss_pred ccccCCcccCCccccEEECCCCccccccC-ccCCCCCCccEEEccCCcccCCCccccccCCCCcEEEccCCcccC-CCCc
Q 040206 127 LSGQIPQCLGNSTLETLDLGMNNFQGSIP-QTNAKGCNLTSLRLSGNHLEGPLPPSLINCVNLQFLDVGNNNLSG-PIPE 204 (347)
Q Consensus 127 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~-~~~~ 204 (347)
+.........+++|++|++++|.+....+ ..+..+++|++|++++|.+....+..+..+++|++|++++|.+.+ ..|.
T Consensus 90 i~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~ 169 (306)
T 2z66_A 90 VITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPD 169 (306)
T ss_dssp EEEEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECS
T ss_pred cccChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchh
Confidence 98766666678899999999999875544 578899999999999999987778889999999999999999975 5788
Q ss_pred cccCCCCCCeEEecCCccccCcCcccc-ccCCcEEEcccCcccccCChhhhccccccCCCcCccCCCCCcEEEccCCccC
Q 040206 205 CLGNSTRLSFLDVGNNSLSGPIPECLA-NSTLEILDMRMNKFSGSLPQNICKKLCFGPLPPSLVNCQYLEVLDVGNNQID 283 (347)
Q Consensus 205 ~l~~~~~L~~L~l~~~~~~~~~~~~~~-~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~i~ 283 (347)
.+..+++|+.|++++|.+++..+..+. .++|+.|++++|.+++..+ ..+..+++|++|++++|.+.
T Consensus 170 ~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~-------------~~~~~l~~L~~L~L~~N~l~ 236 (306)
T 2z66_A 170 IFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDT-------------FPYKCLNSLQVLDYSLNHIM 236 (306)
T ss_dssp CCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCS-------------GGGTTCTTCCEEECTTSCCC
T ss_pred HHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccCh-------------hhccCcccCCEeECCCCCCc
Confidence 899999999999999999877665554 4899999999999985322 25778999999999999999
Q ss_pred Cccchhhhhcc-CCCEEEcccceeecccC
Q 040206 284 DTFLYWLDVLL-QLQVLILRSNRFWGPIG 311 (347)
Q Consensus 284 ~~~~~~~~~l~-~L~~l~L~~n~~~~~~~ 311 (347)
+..+..+..++ +|+.|++++|++.+...
T Consensus 237 ~~~~~~~~~~~~~L~~L~L~~N~~~~~c~ 265 (306)
T 2z66_A 237 TSKKQELQHFPSSLAFLNLTQNDFACTCE 265 (306)
T ss_dssp BCSSSSCCCCCTTCCEEECTTCCEECSGG
T ss_pred ccCHHHHHhhhccCCEEEccCCCeecccC
Confidence 88888888885 99999999999998654
No 49
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.95 E-value=3.2e-26 Score=216.06 Aligned_cols=103 Identities=22% Similarity=0.314 Sum_probs=82.3
Q ss_pred CceEEEecCCCCCCCC-hhhhcCCCccEEeccCCcccccCChhhhhcCCCcccEEEcCCCcCCCCCC---CCCCCCcEEE
Q 040206 1 KTIKTQVKTCNISEFP-DILRTQHQLEWLDLSKNQIRGRIPSWMWDIGVHTLQFLILSQNVLTSIDH---LPWKNLQYLT 76 (347)
Q Consensus 1 ~l~~l~l~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~---~~~~~L~~L~ 76 (347)
+|++|+|++|.++.+| .+|.++++|++|++++|+++ .+|...+. ++++|++|++++|.++.++. ..+++|++|+
T Consensus 77 ~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~-~l~~~~f~-~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~ 154 (635)
T 4g8a_A 77 ELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQ-SLALGAFS-GLSSLQKLVAVETNLASLENFPIGHLKTLKELN 154 (635)
T ss_dssp TCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCC-EECGGGGT-TCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEE
T ss_pred CCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCC-CCCHHHhc-CCCCCCEEECCCCcCCCCChhhhhcCcccCeec
Confidence 4889999999999776 48999999999999999998 45544333 55999999999999988875 5678899999
Q ss_pred ccCCCCCccC-C---CCCCCccEEEcccCcccc
Q 040206 77 LDSNLLQGSL-P---DLPPHMVQLLISNNSLTG 105 (347)
Q Consensus 77 l~~~~~~~~~-~---~~~~~L~~L~l~~~~~~~ 105 (347)
+++|.+.... + ..+++|++|++++|.++.
T Consensus 155 Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~ 187 (635)
T 4g8a_A 155 VAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS 187 (635)
T ss_dssp CCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCE
T ss_pred cccCccccCCCchhhccchhhhhhcccCccccc
Confidence 9999886532 2 224788888888887654
No 50
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.95 E-value=3e-26 Score=194.81 Aligned_cols=226 Identities=21% Similarity=0.177 Sum_probs=174.2
Q ss_pred cEEEccCCCCCccCCCCCCCccEEEcccCcccccCCccccCCCCccEEEcccCcccccCCccc-CCccccEEECCCCc-c
Q 040206 73 QYLTLDSNLLQGSLPDLPPHMVQLLISNNSLTGEIPSSFCNLSSIQYLNLSNNSLSGQIPQCL-GNSTLETLDLGMNN-F 150 (347)
Q Consensus 73 ~~L~l~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~-~~~~L~~L~l~~~~-~ 150 (347)
++++.+++.+...+...++++++|++++|.+....+..+..+++|++|++++|.+....+..+ .+++|++|++++|. +
T Consensus 14 ~~~~c~~~~l~~ip~~~~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l 93 (285)
T 1ozn_A 14 VTTSCPQQGLQAVPVGIPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQL 93 (285)
T ss_dssp CEEECCSSCCSSCCTTCCTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTC
T ss_pred eEEEcCcCCcccCCcCCCCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCc
Confidence 445555555555555555666666666666665555667778888888888887776644444 45678888888886 6
Q ss_pred ccccCccCCCCCCccEEEccCCcccCCCccccccCCCCcEEEccCCcccCCCCccccCCCCCCeEEecCCccccCcCccc
Q 040206 151 QGSIPQTNAKGCNLTSLRLSGNHLEGPLPPSLINCVNLQFLDVGNNNLSGPIPECLGNSTRLSFLDVGNNSLSGPIPECL 230 (347)
Q Consensus 151 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~ 230 (347)
....+..+..+++|++|++++|.++...+..+..+++|++|++++|.+.+..+..+..+++|+.|++++|.+++..+..+
T Consensus 94 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~ 173 (285)
T 1ozn_A 94 RSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAF 173 (285)
T ss_dssp CCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTT
T ss_pred cccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCHHHh
Confidence 65557778888889999998888887767778888899999999998886666678888899999999998886555434
Q ss_pred c-ccCCcEEEcccCcccccCChhhhccccccCCCcCccCCCCCcEEEccCCccCCccchhhhhccCCCEEEcccceeecc
Q 040206 231 A-NSTLEILDMRMNKFSGSLPQNICKKLCFGPLPPSLVNCQYLEVLDVGNNQIDDTFLYWLDVLLQLQVLILRSNRFWGP 309 (347)
Q Consensus 231 ~-~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~l~L~~n~~~~~ 309 (347)
. .++|+.|++++|.+.+. .|..+..+++|++|++++|.+++..+..+..+++|+.|++++|++...
T Consensus 174 ~~l~~L~~L~l~~n~l~~~-------------~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~ 240 (285)
T 1ozn_A 174 RGLHSLDRLLLHQNRVAHV-------------HPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCD 240 (285)
T ss_dssp TTCTTCCEEECCSSCCCEE-------------CTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECS
T ss_pred cCccccCEEECCCCccccc-------------CHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCccCC
Confidence 3 47899999999988864 345678889999999999999987778889999999999999999876
Q ss_pred cC
Q 040206 310 IG 311 (347)
Q Consensus 310 ~~ 311 (347)
.+
T Consensus 241 ~~ 242 (285)
T 1ozn_A 241 CR 242 (285)
T ss_dssp GG
T ss_pred CC
Confidence 54
No 51
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.95 E-value=9.3e-30 Score=231.31 Aligned_cols=246 Identities=22% Similarity=0.224 Sum_probs=138.6
Q ss_pred CceEEEecCCCCC-----CCChhhhcCCCccEEeccCCcccccCChhhhhcCCC----cccEEEcCCCcCCCCC------
Q 040206 1 KTIKTQVKTCNIS-----EFPDILRTQHQLEWLDLSKNQIRGRIPSWMWDIGVH----TLQFLILSQNVLTSID------ 65 (347)
Q Consensus 1 ~l~~l~l~~~~~~-----~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~----~L~~L~l~~~~l~~~~------ 65 (347)
++++|++++|.+. .++.++..+++|++|++++|.+.+..+..+.. .++ +|++|++++|.++...
T Consensus 29 ~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~-~l~~~~~~L~~L~L~~n~i~~~~~~~l~~ 107 (461)
T 1z7x_W 29 QCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQ-GLQTPSCKIQKLSLQNCCLTGAGCGVLSS 107 (461)
T ss_dssp TCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHH-TTCSTTCCCCEEECTTSCCBGGGHHHHHH
T ss_pred CccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHH-HHhhCCCceeEEEccCCCCCHHHHHHHHH
Confidence 3567777777776 34566777777777777777776555555544 334 5777777777776432
Q ss_pred -CCCCCCCcEEEccCCCCCccCC--------CCCCCccEEEcccCcccccC----CccccCCCCccEEEcccCcccccCC
Q 040206 66 -HLPWKNLQYLTLDSNLLQGSLP--------DLPPHMVQLLISNNSLTGEI----PSSFCNLSSIQYLNLSNNSLSGQIP 132 (347)
Q Consensus 66 -~~~~~~L~~L~l~~~~~~~~~~--------~~~~~L~~L~l~~~~~~~~~----~~~~~~l~~L~~L~l~~~~~~~~~~ 132 (347)
...+++|++|++++|.++.... ...++|++|++++|.+.... +..+..+++|++|++++|.+.....
T Consensus 108 ~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~ 187 (461)
T 1z7x_W 108 TLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGV 187 (461)
T ss_dssp HTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCHHHHH
T ss_pred HHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCCcchHHH
Confidence 1456777777777777653211 11245777777777666422 3445556777777777776653222
Q ss_pred ccc------CCccccEEECCCCccccc----cCccCCCCCCccEEEccCCcccCCCcc-----ccccCCCCcEEEccCCc
Q 040206 133 QCL------GNSTLETLDLGMNNFQGS----IPQTNAKGCNLTSLRLSGNHLEGPLPP-----SLINCVNLQFLDVGNNN 197 (347)
Q Consensus 133 ~~~------~~~~L~~L~l~~~~~~~~----~~~~~~~~~~L~~L~l~~~~~~~~~~~-----~l~~~~~L~~L~l~~n~ 197 (347)
..+ ..++|++|++++|.+... .+..+..+++|++|++++|.++..... .+..+++|++|++++|.
T Consensus 188 ~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~ 267 (461)
T 1z7x_W 188 RVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECG 267 (461)
T ss_dssp HHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSC
T ss_pred HHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCC
Confidence 111 123666666666665432 234444556666666666665432111 11235566666666665
Q ss_pred ccCC----CCccccCCCCCCeEEecCCccccCcCccccc------cCCcEEEcccCcccc
Q 040206 198 LSGP----IPECLGNSTRLSFLDVGNNSLSGPIPECLAN------STLEILDMRMNKFSG 247 (347)
Q Consensus 198 ~~~~----~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~------~~L~~L~L~~~~~~~ 247 (347)
+.+. ++..+..+++|++|++++|.+.+.....+.. ++|+.|++++|.+++
T Consensus 268 l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~ 327 (461)
T 1z7x_W 268 ITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTA 327 (461)
T ss_dssp CCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBG
T ss_pred CCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCch
Confidence 5532 3344455666666666666554332222111 355555555555554
No 52
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.95 E-value=3.2e-26 Score=198.27 Aligned_cols=219 Identities=19% Similarity=0.233 Sum_probs=166.5
Q ss_pred CceEEEecCCCCCCCChhhhcCCCccEEeccCCcccccCChhhhhcCCCcccEEEcCCCcCCCCCC--CCCCCCcEEEcc
Q 040206 1 KTIKTQVKTCNISEFPDILRTQHQLEWLDLSKNQIRGRIPSWMWDIGVHTLQFLILSQNVLTSIDH--LPWKNLQYLTLD 78 (347)
Q Consensus 1 ~l~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~--~~~~~L~~L~l~ 78 (347)
+++.|+++++.+..+|..+.++++|++|++++|.+. .+|..+..+ ++|++|++++|.++.++. ..+++|++|+++
T Consensus 82 ~l~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l--~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~ 158 (328)
T 4fcg_A 82 GRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQF--AGLETLTLARNPLRALPASIASLNRLRELSIR 158 (328)
T ss_dssp TCCEEEEESSCCSSCCSCGGGGTTCSEEEEESSCCC-CCCSCGGGG--TTCSEEEEESCCCCCCCGGGGGCTTCCEEEEE
T ss_pred ceeEEEccCCCchhcChhhhhCCCCCEEECCCCCcc-chhHHHhcc--CCCCEEECCCCccccCcHHHhcCcCCCEEECC
Confidence 367889999999988888888999999999999888 788777655 889999999998887765 567888999988
Q ss_pred CCCCCccCCCC------------CCCccEEEcccCcccccCCccccCCCCccEEEcccCcccccCCcccCCccccEEECC
Q 040206 79 SNLLQGSLPDL------------PPHMVQLLISNNSLTGEIPSSFCNLSSIQYLNLSNNSLSGQIPQCLGNSTLETLDLG 146 (347)
Q Consensus 79 ~~~~~~~~~~~------------~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~ 146 (347)
+|...+..+.. +++|++|++++|.+. .+|..+..+++|++|++++|.+...++....+++|++|+++
T Consensus 159 ~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~~l~~~l~~l~~L~~L~Ls 237 (328)
T 4fcg_A 159 ACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLSALGPAIHHLPKLEELDLR 237 (328)
T ss_dssp EETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCCCCCGGGGGCTTCCEEECT
T ss_pred CCCCccccChhHhhccchhhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCCcCchhhccCCCCCEEECc
Confidence 87665544332 567788888887777 56666777778888888887777655554456677777777
Q ss_pred CCccccccCccCCCCCCccEEEccCCcccCCCccccccCCCCcEEEccCCcccCCCCccccCCCCCCeEEecCCccc
Q 040206 147 MNNFQGSIPQTNAKGCNLTSLRLSGNHLEGPLPPSLINCVNLQFLDVGNNNLSGPIPECLGNSTRLSFLDVGNNSLS 223 (347)
Q Consensus 147 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~~~~~ 223 (347)
+|.+....|..+..+++|++|++++|.+....|..+..+++|+.|++++|.+.+.+|..+..+++|+.+.+..+.+.
T Consensus 238 ~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~~~~ 314 (328)
T 4fcg_A 238 GCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQA 314 (328)
T ss_dssp TCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGGGSC
T ss_pred CCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHHHHH
Confidence 77776677777777777777777777766667777777777777777777777777777777777777777655443
No 53
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.95 E-value=2.5e-26 Score=207.35 Aligned_cols=228 Identities=25% Similarity=0.254 Sum_probs=119.2
Q ss_pred CceEEEecCCCCCCCChhhhcCCCccEEeccCCcccccCChhhhhcCCCc-------------ccEEEcCCCcCCCCCCC
Q 040206 1 KTIKTQVKTCNISEFPDILRTQHQLEWLDLSKNQIRGRIPSWMWDIGVHT-------------LQFLILSQNVLTSIDHL 67 (347)
Q Consensus 1 ~l~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~-------------L~~L~l~~~~l~~~~~~ 67 (347)
.|++++++++.+..+|+.++++++|++|++++|.+.+.+|..+..+ .+ +++|+++++.+++++..
T Consensus 12 ~L~~L~l~~n~l~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l--~~L~~l~l~~c~~~~l~~L~l~~~~l~~lp~~ 89 (454)
T 1jl5_A 12 FLQEPLRHSSNLTEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQ--REMAVSRLRDCLDRQAHELELNNLGLSSLPEL 89 (454)
T ss_dssp ----------------------CCHHHHHHHHHHHHHTSCTTSCCC--HHHHHHHHHHHHHHTCSEEECTTSCCSCCCSC
T ss_pred cchhhhcccCchhhCChhHhcccchhhhhccCCcccccCCcccccc--hhcchhhhhhhhccCCCEEEecCCccccCCCC
Confidence 3688999999999999999999999999999999998888876643 33 36666666666665442
Q ss_pred CCCCCcEEEccCCCCCccC-------------------CCCCCCccEEEcccCcccccCCccccCCCCccEEEcccCccc
Q 040206 68 PWKNLQYLTLDSNLLQGSL-------------------PDLPPHMVQLLISNNSLTGEIPSSFCNLSSIQYLNLSNNSLS 128 (347)
Q Consensus 68 ~~~~L~~L~l~~~~~~~~~-------------------~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~ 128 (347)
.++|++|++++|.+.+.+ +..+++|++|++++|.+.. .| .+..+++|++|++++|.+.
T Consensus 90 -~~~L~~L~l~~n~l~~lp~~~~~L~~L~l~~n~l~~l~~~~~~L~~L~L~~n~l~~-lp-~~~~l~~L~~L~l~~N~l~ 166 (454)
T 1jl5_A 90 -PPHLESLVASCNSLTELPELPQSLKSLLVDNNNLKALSDLPPLLEYLGVSNNQLEK-LP-ELQNSSFLKIIDVDNNSLK 166 (454)
T ss_dssp -CTTCSEEECCSSCCSSCCCCCTTCCEEECCSSCCSCCCSCCTTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCS
T ss_pred -cCCCCEEEccCCcCCccccccCCCcEEECCCCccCcccCCCCCCCEEECcCCCCCC-Cc-ccCCCCCCCEEECCCCcCc
Confidence 245555555555554321 1222455555555555553 33 3555666666666666555
Q ss_pred ccCCcccCCccccEEECCCCccccccCccCCCCCCccEEEccCCcccCCCccccccCCCCcEEEccCCcccCCCCccccC
Q 040206 129 GQIPQCLGNSTLETLDLGMNNFQGSIPQTNAKGCNLTSLRLSGNHLEGPLPPSLINCVNLQFLDVGNNNLSGPIPECLGN 208 (347)
Q Consensus 129 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~ 208 (347)
..+ .. ..+|++|++++|.+.. .| .+..+++|+++++++|.++. .+.. .++|+.|++++|.+. .+| .+..
T Consensus 167 ~lp-~~--~~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l~~N~l~~-l~~~---~~~L~~L~l~~n~l~-~lp-~~~~ 235 (454)
T 1jl5_A 167 KLP-DL--PPSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYADNNSLKK-LPDL---PLSLESIVAGNNILE-ELP-ELQN 235 (454)
T ss_dssp CCC-CC--CTTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSS-CCCC---CTTCCEEECCSSCCS-SCC-CCTT
T ss_pred ccC-CC--cccccEEECcCCcCCc-Cc-cccCCCCCCEEECCCCcCCc-CCCC---cCcccEEECcCCcCC-ccc-ccCC
Confidence 322 11 2356666666665553 33 35566666666666666552 2221 246666666666665 334 3666
Q ss_pred CCCCCeEEecCCccccCcCccccccCCcEEEcccCcccc
Q 040206 209 STRLSFLDVGNNSLSGPIPECLANSTLEILDMRMNKFSG 247 (347)
Q Consensus 209 ~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~ 247 (347)
+++|+.|++++|.+++.. .. .++|+.|++++|.+.+
T Consensus 236 l~~L~~L~l~~N~l~~l~-~~--~~~L~~L~l~~N~l~~ 271 (454)
T 1jl5_A 236 LPFLTTIYADNNLLKTLP-DL--PPSLEALNVRDNYLTD 271 (454)
T ss_dssp CTTCCEEECCSSCCSSCC-SC--CTTCCEEECCSSCCSC
T ss_pred CCCCCEEECCCCcCCccc-cc--ccccCEEECCCCcccc
Confidence 677777777777666422 21 2567777777776663
No 54
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.95 E-value=1.2e-25 Score=202.80 Aligned_cols=246 Identities=21% Similarity=0.154 Sum_probs=192.2
Q ss_pred cccEEEcCCCcCCCCCCCCCCCCcEEEccCCCCCccCCCC---CCCccEEEcccCcccccCCccccCCCCccEEEcccCc
Q 040206 50 TLQFLILSQNVLTSIDHLPWKNLQYLTLDSNLLQGSLPDL---PPHMVQLLISNNSLTGEIPSSFCNLSSIQYLNLSNNS 126 (347)
Q Consensus 50 ~L~~L~l~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~~---~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~ 126 (347)
..+.++..+..++.++..-.++++.|++++|.+....... +++|++|++++|.+..+.+..|.++++|++|++++|.
T Consensus 44 ~~~~v~c~~~~l~~iP~~~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~ 123 (440)
T 3zyj_A 44 QFSKVICVRKNLREVPDGISTNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNR 123 (440)
T ss_dssp TSCEEECCSCCCSSCCSCCCTTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSC
T ss_pred CCCEEEeCCCCcCcCCCCCCCCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCc
Confidence 3567777777777777766677888888888877654433 4788888888888887777788888889999998888
Q ss_pred ccccCCccc-CCccccEEECCCCccccccCccCCCCCCccEEEccCC-cccCCCccccccCCCCcEEEccCCcccCCCCc
Q 040206 127 LSGQIPQCL-GNSTLETLDLGMNNFQGSIPQTNAKGCNLTSLRLSGN-HLEGPLPPSLINCVNLQFLDVGNNNLSGPIPE 204 (347)
Q Consensus 127 ~~~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~-~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~ 204 (347)
+....+..+ .+++|++|++++|.+....+..+..+++|++|+++++ .+....+..+..+++|+.|++++|.+.. +|
T Consensus 124 l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~-~~- 201 (440)
T 3zyj_A 124 LTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLRE-IP- 201 (440)
T ss_dssp CSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSS-CC-
T ss_pred CCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCcc-cc-
Confidence 886666544 5678889999988887666677888889999999885 4443444567888899999999998873 33
Q ss_pred cccCCCCCCeEEecCCccccCcCccccc-cCCcEEEcccCcccccCChhhhccccccCCCcCccCCCCCcEEEccCCccC
Q 040206 205 CLGNSTRLSFLDVGNNSLSGPIPECLAN-STLEILDMRMNKFSGSLPQNICKKLCFGPLPPSLVNCQYLEVLDVGNNQID 283 (347)
Q Consensus 205 ~l~~~~~L~~L~l~~~~~~~~~~~~~~~-~~L~~L~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~i~ 283 (347)
.+..+++|+.|++++|.+++..+..+.. ++|+.|++++|.+.+. .+..|..+++|++|+|++|.++
T Consensus 202 ~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~-------------~~~~~~~l~~L~~L~L~~N~l~ 268 (440)
T 3zyj_A 202 NLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVI-------------ERNAFDNLQSLVEINLAHNNLT 268 (440)
T ss_dssp CCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEE-------------CTTSSTTCTTCCEEECTTSCCC
T ss_pred ccCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEE-------------ChhhhcCCCCCCEEECCCCCCC
Confidence 4778888999999999888765554443 7899999999988864 3346788899999999999998
Q ss_pred CccchhhhhccCCCEEEcccceeeccc
Q 040206 284 DTFLYWLDVLLQLQVLILRSNRFWGPI 310 (347)
Q Consensus 284 ~~~~~~~~~l~~L~~l~L~~n~~~~~~ 310 (347)
...+..+..+++|+.|+|++|++..+.
T Consensus 269 ~~~~~~~~~l~~L~~L~L~~Np~~CdC 295 (440)
T 3zyj_A 269 LLPHDLFTPLHHLERIHLHHNPWNCNC 295 (440)
T ss_dssp CCCTTTTSSCTTCCEEECCSSCEECSS
T ss_pred ccChhHhccccCCCEEEcCCCCccCCC
Confidence 888888888999999999999987654
No 55
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.94 E-value=1.3e-25 Score=203.26 Aligned_cols=246 Identities=21% Similarity=0.153 Sum_probs=196.1
Q ss_pred ccEEEcCCCcCCCCCCCCCCCCcEEEccCCCCCccCCCC---CCCccEEEcccCcccccCCccccCCCCccEEEcccCcc
Q 040206 51 LQFLILSQNVLTSIDHLPWKNLQYLTLDSNLLQGSLPDL---PPHMVQLLISNNSLTGEIPSSFCNLSSIQYLNLSNNSL 127 (347)
Q Consensus 51 L~~L~l~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~~---~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~ 127 (347)
.+.++.++..++.++..-.+++++|++++|.+....+.. +++|++|++++|.+..+.+..|.++++|++|++++|.+
T Consensus 56 ~~~v~c~~~~l~~iP~~~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l 135 (452)
T 3zyi_A 56 FSKVVCTRRGLSEVPQGIPSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWL 135 (452)
T ss_dssp SCEEECCSSCCSSCCSCCCTTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCC
T ss_pred CcEEEECCCCcCccCCCCCCCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcC
Confidence 467777777788777766678888888888887654433 47888888888888877778888899999999999988
Q ss_pred cccCCccc-CCccccEEECCCCccccccCccCCCCCCccEEEccCC-cccCCCccccccCCCCcEEEccCCcccCCCCcc
Q 040206 128 SGQIPQCL-GNSTLETLDLGMNNFQGSIPQTNAKGCNLTSLRLSGN-HLEGPLPPSLINCVNLQFLDVGNNNLSGPIPEC 205 (347)
Q Consensus 128 ~~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~-~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~ 205 (347)
....+..+ .+++|++|++++|.+....+..+..+++|++|++++| .+....+..+..+++|+.|++++|.+.+. + .
T Consensus 136 ~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~-~-~ 213 (452)
T 3zyi_A 136 TVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDM-P-N 213 (452)
T ss_dssp SBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSC-C-C
T ss_pred CccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCccccc-c-c
Confidence 87766655 4678999999999888666677888899999999884 44444445678889999999999988743 3 5
Q ss_pred ccCCCCCCeEEecCCccccCcCccccc-cCCcEEEcccCcccccCChhhhccccccCCCcCccCCCCCcEEEccCCccCC
Q 040206 206 LGNSTRLSFLDVGNNSLSGPIPECLAN-STLEILDMRMNKFSGSLPQNICKKLCFGPLPPSLVNCQYLEVLDVGNNQIDD 284 (347)
Q Consensus 206 l~~~~~L~~L~l~~~~~~~~~~~~~~~-~~L~~L~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~i~~ 284 (347)
+..+++|+.|++++|.+.+..+..+.. ++|+.|++++|.+.+. .+..+..+++|+.|+|++|.+++
T Consensus 214 ~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~-------------~~~~~~~l~~L~~L~L~~N~l~~ 280 (452)
T 3zyi_A 214 LTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLI-------------ERNAFDGLASLVELNLAHNNLSS 280 (452)
T ss_dssp CTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEE-------------CTTTTTTCTTCCEEECCSSCCSC
T ss_pred ccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceE-------------CHHHhcCCCCCCEEECCCCcCCc
Confidence 778889999999999888766655443 8899999999998864 34467888999999999999988
Q ss_pred ccchhhhhccCCCEEEcccceeecccC
Q 040206 285 TFLYWLDVLLQLQVLILRSNRFWGPIG 311 (347)
Q Consensus 285 ~~~~~~~~l~~L~~l~L~~n~~~~~~~ 311 (347)
..+..+..+++|+.|+|++|++..+..
T Consensus 281 ~~~~~~~~l~~L~~L~L~~Np~~CdC~ 307 (452)
T 3zyi_A 281 LPHDLFTPLRYLVELHLHHNPWNCDCD 307 (452)
T ss_dssp CCTTSSTTCTTCCEEECCSSCEECSTT
T ss_pred cChHHhccccCCCEEEccCCCcCCCCC
Confidence 777888889999999999999886644
No 56
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.94 E-value=1.8e-25 Score=190.12 Aligned_cols=217 Identities=23% Similarity=0.218 Sum_probs=140.1
Q ss_pred eEEEecCCCCCCCChhhhcCCCccEEeccCCcccccCChhhhhcCCCcccEEEcCCCcCCCCCC---CCCCCCcEEEccC
Q 040206 3 IKTQVKTCNISEFPDILRTQHQLEWLDLSKNQIRGRIPSWMWDIGVHTLQFLILSQNVLTSIDH---LPWKNLQYLTLDS 79 (347)
Q Consensus 3 ~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~---~~~~~L~~L~l~~ 79 (347)
+.++.+++.++.+|..+ .++|+.|++++|.+++..+..+.. +++|++|++++|.++.+.. ..+++|++|++++
T Consensus 14 ~~~~c~~~~l~~ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~--~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 89 (285)
T 1ozn_A 14 VTTSCPQQGLQAVPVGI--PAASQRIFLHGNRISHVPAASFRA--CRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSD 89 (285)
T ss_dssp CEEECCSSCCSSCCTTC--CTTCSEEECTTSCCCEECTTTTTT--CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred eEEEcCcCCcccCCcCC--CCCceEEEeeCCcCCccCHHHccc--CCCCCEEECCCCccceeCHhhcCCccCCCEEeCCC
Confidence 45777788888888644 478888888888888544455543 4888888888888877644 4567788888877
Q ss_pred CC-CCccCCCC---CCCccEEEcccCcccccCCccccCCCCccEEEcccCcccccCCccc-CCccccEEECCCCcccccc
Q 040206 80 NL-LQGSLPDL---PPHMVQLLISNNSLTGEIPSSFCNLSSIQYLNLSNNSLSGQIPQCL-GNSTLETLDLGMNNFQGSI 154 (347)
Q Consensus 80 ~~-~~~~~~~~---~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~ 154 (347)
|. +....+.. +++|++|++++|.+....+..+..+++|++|++++|.+....+..+ .+++|+.|++++|.+....
T Consensus 90 n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 169 (285)
T 1ozn_A 90 NAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVP 169 (285)
T ss_dssp CTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEEC
T ss_pred CCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccC
Confidence 76 55442322 3666777777776665556666666667777776666665444433 3456666666666665444
Q ss_pred CccCCCCCCccEEEccCCcccCCCccccccCCCCcEEEccCCcccCCCCccccCCCCCCeEEecCCccc
Q 040206 155 PQTNAKGCNLTSLRLSGNHLEGPLPPSLINCVNLQFLDVGNNNLSGPIPECLGNSTRLSFLDVGNNSLS 223 (347)
Q Consensus 155 ~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~~~~~ 223 (347)
+..+..+++|++|++++|.++...+..+..+++|+.|++++|.+.+..+..+..+++|+.|++++|++.
T Consensus 170 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~ 238 (285)
T 1ozn_A 170 ERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWV 238 (285)
T ss_dssp TTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEE
T ss_pred HHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCcc
Confidence 445566666666666666665555556666666666666666666544455666666666666666554
No 57
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.94 E-value=3.2e-27 Score=203.84 Aligned_cols=250 Identities=20% Similarity=0.158 Sum_probs=170.1
Q ss_pred hhhcCCCccEEeccCCcccccCChhhhhcCCCcccEEEcCCCcCCCCCC-CCCCCCcEEEccCCCCCccCCCCCCCccEE
Q 040206 18 ILRTQHQLEWLDLSKNQIRGRIPSWMWDIGVHTLQFLILSQNVLTSIDH-LPWKNLQYLTLDSNLLQGSLPDLPPHMVQL 96 (347)
Q Consensus 18 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~-~~~~~L~~L~l~~~~~~~~~~~~~~~L~~L 96 (347)
.+..+++|+.|++++|++++..+..+... ++|++|++++|.++.... ..+++|++|++
T Consensus 29 ~~~~~~~L~~L~L~~n~l~~~~~~~~~~l--~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~L------------------- 87 (317)
T 3o53_A 29 LRQSAWNVKELDLSGNPLSQISAADLAPF--TKLELLNLSSNVLYETLDLESLSTLRTLDL------------------- 87 (317)
T ss_dssp HHTTGGGCSEEECTTSCCCCCCHHHHTTC--TTCCEEECTTSCCEEEEEETTCTTCCEEEC-------------------
T ss_pred HhccCCCCCEEECcCCccCcCCHHHhhCC--CcCCEEECCCCcCCcchhhhhcCCCCEEEC-------------------
Confidence 34455667777777666664444444433 666666666666554332 33444444444
Q ss_pred EcccCcccccCCccccCCCCccEEEcccCcccccCCcccCCccccEEECCCCccccccCccCCCCCCccEEEccCCcccC
Q 040206 97 LISNNSLTGEIPSSFCNLSSIQYLNLSNNSLSGQIPQCLGNSTLETLDLGMNNFQGSIPQTNAKGCNLTSLRLSGNHLEG 176 (347)
Q Consensus 97 ~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 176 (347)
++|.+... ...++|++|++++|.+....+.. .++|++|++++|.+....+..+..+++|++|++++|.++.
T Consensus 88 --s~n~l~~l-----~~~~~L~~L~l~~n~l~~~~~~~--~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~ 158 (317)
T 3o53_A 88 --NNNYVQEL-----LVGPSIETLHAANNNISRVSCSR--GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDT 158 (317)
T ss_dssp --CSSEEEEE-----EECTTCCEEECCSSCCSEEEECC--CSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCE
T ss_pred --cCCccccc-----cCCCCcCEEECCCCccCCcCccc--cCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCc
Confidence 44444421 12256666677666665444332 4567777777777765556667777888888888888775
Q ss_pred CCcccc-ccCCCCcEEEccCCcccCCCCccccCCCCCCeEEecCCccccCcCccccccCCcEEEcccCcccccCChhhhc
Q 040206 177 PLPPSL-INCVNLQFLDVGNNNLSGPIPECLGNSTRLSFLDVGNNSLSGPIPECLANSTLEILDMRMNKFSGSLPQNICK 255 (347)
Q Consensus 177 ~~~~~l-~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~ 255 (347)
..+..+ ..+++|++|++++|.+.+. + ....+++|+.|++++|.+++..+.....++|+.|++++|.++.
T Consensus 159 ~~~~~~~~~l~~L~~L~L~~N~l~~~-~-~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~L~~N~l~~-------- 228 (317)
T 3o53_A 159 VNFAELAASSDTLEHLNLQYNFIYDV-K-GQVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVL-------- 228 (317)
T ss_dssp EEGGGGGGGTTTCCEEECTTSCCCEE-E-CCCCCTTCCEEECCSSCCCEECGGGGGGTTCSEEECTTSCCCE--------
T ss_pred ccHHHHhhccCcCCEEECCCCcCccc-c-cccccccCCEEECCCCcCCcchhhhcccCcccEEECcCCcccc--------
Confidence 555555 3678899999999888744 2 2335888999999999888766665555899999999998883
Q ss_pred cccccCCCcCccCCCCCcEEEccCCccC-CccchhhhhccCCCEEEcccce-eecccCCc
Q 040206 256 KLCFGPLPPSLVNCQYLEVLDVGNNQID-DTFLYWLDVLLQLQVLILRSNR-FWGPIGKL 313 (347)
Q Consensus 256 ~~~~~~l~~~~~~~~~L~~L~L~~n~i~-~~~~~~~~~l~~L~~l~L~~n~-~~~~~~~~ 313 (347)
+|..+..+++|+.|++++|.+. +..+..+..++.|+.++++++. +.+..+..
T Consensus 229 ------l~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~~~~~l~~~~~~~ 282 (317)
T 3o53_A 229 ------IEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEE 282 (317)
T ss_dssp ------ECTTCCCCTTCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHHHHHHHHSSSSCC
T ss_pred ------hhhHhhcCCCCCEEEccCCCccCcCHHHHHhccccceEEECCCchhccCCchhc
Confidence 5566788899999999999998 6677788889999999999655 55554433
No 58
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.94 E-value=1.6e-25 Score=193.79 Aligned_cols=217 Identities=24% Similarity=0.223 Sum_probs=121.1
Q ss_pred CccEEEcccCcccccCCccccCCCCccEEEcccCcccccCCcccCCccccEEECCCCccccccCccCCCCCCccEEEccC
Q 040206 92 HMVQLLISNNSLTGEIPSSFCNLSSIQYLNLSNNSLSGQIPQCLGNSTLETLDLGMNNFQGSIPQTNAKGCNLTSLRLSG 171 (347)
Q Consensus 92 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~ 171 (347)
+++.|++++|.+. .+|..+..+++|++|++++|.+...+.....+++|++|++++|.+. ..|..+..+++|++|++++
T Consensus 82 ~l~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L~~ 159 (328)
T 4fcg_A 82 GRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRA 159 (328)
T ss_dssp TCCEEEEESSCCS-SCCSCGGGGTTCSEEEEESSCCCCCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEEEE
T ss_pred ceeEEEccCCCch-hcChhhhhCCCCCEEECCCCCccchhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEECCC
Confidence 3344444444443 3333344445555555555544422222223344555555555444 3444455555555555555
Q ss_pred CcccCCCccccc---------cCCCCcEEEccCCcccCCCCccccCCCCCCeEEecCCccccCcCccccccCCcEEEccc
Q 040206 172 NHLEGPLPPSLI---------NCVNLQFLDVGNNNLSGPIPECLGNSTRLSFLDVGNNSLSGPIPECLANSTLEILDMRM 242 (347)
Q Consensus 172 ~~~~~~~~~~l~---------~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~L~~ 242 (347)
|......|..+. .+++|++|++++|.+. .+|..+..+++|+.|++++|.+++..+.....++|+.|++++
T Consensus 160 n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~~l~~~l~~l~~L~~L~Ls~ 238 (328)
T 4fcg_A 160 CPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLSALGPAIHHLPKLEELDLRG 238 (328)
T ss_dssp ETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCCCCCGGGGGCTTCCEEECTT
T ss_pred CCCccccChhHhhccchhhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCCcCchhhccCCCCCEEECcC
Confidence 444434443332 3666666666666666 455566666666777766666665444333346667777776
Q ss_pred CcccccCChhhhccccccCCCcCccCCCCCcEEEccCCccCCccchhhhhccCCCEEEcccceeecccCCccccceeeee
Q 040206 243 NKFSGSLPQNICKKLCFGPLPPSLVNCQYLEVLDVGNNQIDDTFLYWLDVLLQLQVLILRSNRFWGPIGKLRSRWSGHFI 322 (347)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~l~L~~n~~~~~~~~~~~~~~~~~~ 322 (347)
|.+.+. +|..+..+++|++|++++|.+.+..+..+..+++|+.|++++|++.+.+|..+..+.....
T Consensus 239 n~~~~~-------------~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~ 305 (328)
T 4fcg_A 239 CTALRN-------------YPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCI 305 (328)
T ss_dssp CTTCCB-------------CCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCE
T ss_pred Ccchhh-------------hHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceE
Confidence 666643 4445666667777777776666666666666777777777777777777766666665544
Q ss_pred eE
Q 040206 323 VR 324 (347)
Q Consensus 323 ~~ 324 (347)
..
T Consensus 306 l~ 307 (328)
T 4fcg_A 306 IL 307 (328)
T ss_dssp EE
T ss_pred Ee
Confidence 43
No 59
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.93 E-value=1.3e-24 Score=196.01 Aligned_cols=241 Identities=20% Similarity=0.129 Sum_probs=207.3
Q ss_pred CCcEEEccCCCCCccCCCCCCCccEEEcccCcccccCCccccCCCCccEEEcccCcccccCCccc-CCccccEEECCCCc
Q 040206 71 NLQYLTLDSNLLQGSLPDLPPHMVQLLISNNSLTGEIPSSFCNLSSIQYLNLSNNSLSGQIPQCL-GNSTLETLDLGMNN 149 (347)
Q Consensus 71 ~L~~L~l~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~-~~~~L~~L~l~~~~ 149 (347)
..+.++.++..+...+...+++++.|++++|.+....+..|.++++|++|++++|.+....+..+ .+++|++|++++|.
T Consensus 44 ~~~~v~c~~~~l~~iP~~~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~ 123 (440)
T 3zyj_A 44 QFSKVICVRKNLREVPDGISTNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNR 123 (440)
T ss_dssp TSCEEECCSCCCSSCCSCCCTTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSC
T ss_pred CCCEEEeCCCCcCcCCCCCCCCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCc
Confidence 46788999999998888888999999999999998888899999999999999999987766555 56899999999999
Q ss_pred cccccCccCCCCCCccEEEccCCcccCCCccccccCCCCcEEEccCCc-ccCCCCccccCCCCCCeEEecCCccccCcCc
Q 040206 150 FQGSIPQTNAKGCNLTSLRLSGNHLEGPLPPSLINCVNLQFLDVGNNN-LSGPIPECLGNSTRLSFLDVGNNSLSGPIPE 228 (347)
Q Consensus 150 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~-~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~ 228 (347)
+....+..+..+++|++|++++|.+....+..+..+++|+.|++++|+ +....+..+..+++|+.|++++|.++. .+.
T Consensus 124 l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~-~~~ 202 (440)
T 3zyj_A 124 LTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLRE-IPN 202 (440)
T ss_dssp CSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSS-CCC
T ss_pred CCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCcc-ccc
Confidence 986666789999999999999999987777789999999999999954 444445578899999999999999984 445
Q ss_pred cccccCCcEEEcccCcccccCChhhhccccccCCCcCccCCCCCcEEEccCCccCCccchhhhhccCCCEEEcccceeec
Q 040206 229 CLANSTLEILDMRMNKFSGSLPQNICKKLCFGPLPPSLVNCQYLEVLDVGNNQIDDTFLYWLDVLLQLQVLILRSNRFWG 308 (347)
Q Consensus 229 ~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~l~L~~n~~~~ 308 (347)
....++|+.|++++|.+++. .+..|..+++|++|++++|.+.+..+..+..+++|+.|+|++|.+++
T Consensus 203 ~~~l~~L~~L~Ls~N~l~~~-------------~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 269 (440)
T 3zyj_A 203 LTPLIKLDELDLSGNHLSAI-------------RPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTL 269 (440)
T ss_dssp CTTCSSCCEEECTTSCCCEE-------------CTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCC
T ss_pred cCCCcccCEEECCCCccCcc-------------ChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCc
Confidence 55568999999999999964 34578889999999999999998888889999999999999999998
Q ss_pred ccCCccccceeeeeeEe
Q 040206 309 PIGKLRSRWSGHFIVRT 325 (347)
Q Consensus 309 ~~~~~~~~~~~~~~~~~ 325 (347)
..+..+..+..+..+..
T Consensus 270 ~~~~~~~~l~~L~~L~L 286 (440)
T 3zyj_A 270 LPHDLFTPLHHLERIHL 286 (440)
T ss_dssp CCTTTTSSCTTCCEEEC
T ss_pred cChhHhccccCCCEEEc
Confidence 77777666665555543
No 60
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.93 E-value=1.3e-24 Score=196.83 Aligned_cols=241 Identities=21% Similarity=0.145 Sum_probs=206.4
Q ss_pred CCcEEEccCCCCCccCCCCCCCccEEEcccCcccccCCccccCCCCccEEEcccCcccccCCccc-CCccccEEECCCCc
Q 040206 71 NLQYLTLDSNLLQGSLPDLPPHMVQLLISNNSLTGEIPSSFCNLSSIQYLNLSNNSLSGQIPQCL-GNSTLETLDLGMNN 149 (347)
Q Consensus 71 ~L~~L~l~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~-~~~~L~~L~l~~~~ 149 (347)
+.+.++.++..+...+...++++++|++++|.+....+..|.++++|+.|++++|.+....+..+ .+++|++|++++|.
T Consensus 55 ~~~~v~c~~~~l~~iP~~~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~ 134 (452)
T 3zyi_A 55 QFSKVVCTRRGLSEVPQGIPSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNW 134 (452)
T ss_dssp SSCEEECCSSCCSSCCSCCCTTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred CCcEEEECCCCcCccCCCCCCCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCc
Confidence 46788999889988888888999999999999998888899999999999999999988776655 57799999999999
Q ss_pred cccccCccCCCCCCccEEEccCCcccCCCccccccCCCCcEEEccCC-cccCCCCccccCCCCCCeEEecCCccccCcCc
Q 040206 150 FQGSIPQTNAKGCNLTSLRLSGNHLEGPLPPSLINCVNLQFLDVGNN-NLSGPIPECLGNSTRLSFLDVGNNSLSGPIPE 228 (347)
Q Consensus 150 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n-~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~ 228 (347)
+....+..+..+++|++|++++|.+....+..+..+++|+.|++++| .+....+..+..+++|+.|++++|.+++. +.
T Consensus 135 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~-~~ 213 (452)
T 3zyi_A 135 LTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDM-PN 213 (452)
T ss_dssp CSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSC-CC
T ss_pred CCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCccccc-cc
Confidence 98777777999999999999999998766678899999999999995 44444455788999999999999999854 55
Q ss_pred cccccCCcEEEcccCcccccCChhhhccccccCCCcCccCCCCCcEEEccCCccCCccchhhhhccCCCEEEcccceeec
Q 040206 229 CLANSTLEILDMRMNKFSGSLPQNICKKLCFGPLPPSLVNCQYLEVLDVGNNQIDDTFLYWLDVLLQLQVLILRSNRFWG 308 (347)
Q Consensus 229 ~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~l~L~~n~~~~ 308 (347)
....++|+.|++++|.+.+.. |..+..+++|++|++++|.+.+..+..+..+++|+.|+|++|.+++
T Consensus 214 ~~~l~~L~~L~Ls~N~l~~~~-------------~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 280 (452)
T 3zyi_A 214 LTPLVGLEELEMSGNHFPEIR-------------PGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSS 280 (452)
T ss_dssp CTTCTTCCEEECTTSCCSEEC-------------GGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSC
T ss_pred ccccccccEEECcCCcCcccC-------------cccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCc
Confidence 555689999999999999643 4467889999999999999998888889999999999999999998
Q ss_pred ccCCccccceeeeeeEe
Q 040206 309 PIGKLRSRWSGHFIVRT 325 (347)
Q Consensus 309 ~~~~~~~~~~~~~~~~~ 325 (347)
..+..+..+..+..+..
T Consensus 281 ~~~~~~~~l~~L~~L~L 297 (452)
T 3zyi_A 281 LPHDLFTPLRYLVELHL 297 (452)
T ss_dssp CCTTSSTTCTTCCEEEC
T ss_pred cChHHhccccCCCEEEc
Confidence 76666666665555443
No 61
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.93 E-value=1.9e-24 Score=182.86 Aligned_cols=223 Identities=22% Similarity=0.148 Sum_probs=170.0
Q ss_pred EEccCCCCCccCCCCCCCccEEEcccCcccccCCccccCCCCccEEEcccCcccccCCccc-CCccccEEECCCCccccc
Q 040206 75 LTLDSNLLQGSLPDLPPHMVQLLISNNSLTGEIPSSFCNLSSIQYLNLSNNSLSGQIPQCL-GNSTLETLDLGMNNFQGS 153 (347)
Q Consensus 75 L~l~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~ 153 (347)
.+..+..+...+...++++++|++++|.+....+..+.++++|++|++++|.+....+..+ .+++|++|++++|.+...
T Consensus 12 ~~c~~~~l~~ip~~l~~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~ 91 (276)
T 2z62_A 12 YQCMELNFYKIPDNLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSL 91 (276)
T ss_dssp EECTTSCCSSCCSSSCTTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEE
T ss_pred EEecCCCccccCCCCCCCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCcc
Confidence 3344444444444455667777777777776666677788888888888888876665444 556888888888888766
Q ss_pred cCccCCCCCCccEEEccCCcccCCCccccccCCCCcEEEccCCcccCC-CCccccCCCCCCeEEecCCccccCcCccccc
Q 040206 154 IPQTNAKGCNLTSLRLSGNHLEGPLPPSLINCVNLQFLDVGNNNLSGP-IPECLGNSTRLSFLDVGNNSLSGPIPECLAN 232 (347)
Q Consensus 154 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~-~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~ 232 (347)
.+..+..+++|++|++++|.+....+..++.+++|++|++++|.+.+. .|..+..+++|+.|++++|.+++..+..+..
T Consensus 92 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~ 171 (276)
T 2z62_A 92 ALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRV 171 (276)
T ss_dssp CTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHH
T ss_pred ChhhhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhh
Confidence 667788888999999988888766666788889999999999988753 4788888999999999999887655444333
Q ss_pred -cCCc----EEEcccCcccccCChhhhccccccCCCcCccCCCCCcEEEccCCccCCccchhhhhccCCCEEEcccceee
Q 040206 233 -STLE----ILDMRMNKFSGSLPQNICKKLCFGPLPPSLVNCQYLEVLDVGNNQIDDTFLYWLDVLLQLQVLILRSNRFW 307 (347)
Q Consensus 233 -~~L~----~L~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~l~L~~n~~~ 307 (347)
.+++ .+++++|.+.+. +.......+|++|++++|.+++.++..+..+++|+.|++++|++.
T Consensus 172 l~~L~~l~l~L~ls~n~l~~~--------------~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~ 237 (276)
T 2z62_A 172 LHQMPLLNLSLDLSLNPMNFI--------------QPGAFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWD 237 (276)
T ss_dssp HHTCTTCCEEEECCSSCCCEE--------------CTTSSCSCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBC
T ss_pred hhhccccceeeecCCCccccc--------------CccccCCCcccEEECCCCceeecCHhHhcccccccEEEccCCccc
Confidence 4555 899999999853 223334458999999999999877777889999999999999999
Q ss_pred cccC
Q 040206 308 GPIG 311 (347)
Q Consensus 308 ~~~~ 311 (347)
+.++
T Consensus 238 c~c~ 241 (276)
T 2z62_A 238 CSCP 241 (276)
T ss_dssp CCTT
T ss_pred ccCC
Confidence 8876
No 62
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.93 E-value=6.3e-24 Score=197.49 Aligned_cols=248 Identities=25% Similarity=0.267 Sum_probs=206.2
Q ss_pred CceEEEecCCCCCCCChhhhcCCCccEEeccCCcccccCChhhhhcCCCcccEEEcCCCcCCCCCCCCCCCCcEEEccCC
Q 040206 1 KTIKTQVKTCNISEFPDILRTQHQLEWLDLSKNQIRGRIPSWMWDIGVHTLQFLILSQNVLTSIDHLPWKNLQYLTLDSN 80 (347)
Q Consensus 1 ~l~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~L~~L~l~~~ 80 (347)
+|++|++++|.++.+|. .+++|++|++++|+++ .+|. .+++|++|++++|.++.++. .+++|+.|++++|
T Consensus 62 ~L~~L~L~~N~l~~lp~---~l~~L~~L~Ls~N~l~-~lp~-----~l~~L~~L~Ls~N~l~~l~~-~l~~L~~L~L~~N 131 (622)
T 3g06_A 62 HITTLVIPDNNLTSLPA---LPPELRTLEVSGNQLT-SLPV-----LPPGLLELSIFSNPLTHLPA-LPSGLCKLWIFGN 131 (622)
T ss_dssp TCSEEEECSCCCSCCCC---CCTTCCEEEECSCCCS-CCCC-----CCTTCCEEEECSCCCCCCCC-CCTTCCEEECCSS
T ss_pred CCcEEEecCCCCCCCCC---cCCCCCEEEcCCCcCC-cCCC-----CCCCCCEEECcCCcCCCCCC-CCCCcCEEECCCC
Confidence 47899999999999997 6799999999999998 5665 33999999999999999888 7799999999999
Q ss_pred CCCccCCCCCCCccEEEcccCcccccCCccccCCCCccEEEcccCcccccCCcccCCccccEEECCCCccccccCccCCC
Q 040206 81 LLQGSLPDLPPHMVQLLISNNSLTGEIPSSFCNLSSIQYLNLSNNSLSGQIPQCLGNSTLETLDLGMNNFQGSIPQTNAK 160 (347)
Q Consensus 81 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~ 160 (347)
.++..+. .+++|++|++++|.+.. ++. .+.+|+.|++++|.+...+ ...++|+.|++++|.+.. +|. .
T Consensus 132 ~l~~lp~-~l~~L~~L~Ls~N~l~~-l~~---~~~~L~~L~L~~N~l~~l~---~~~~~L~~L~Ls~N~l~~-l~~---~ 199 (622)
T 3g06_A 132 QLTSLPV-LPPGLQELSVSDNQLAS-LPA---LPSELCKLWAYNNQLTSLP---MLPSGLQELSVSDNQLAS-LPT---L 199 (622)
T ss_dssp CCSCCCC-CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSCCC---CCCTTCCEEECCSSCCSC-CCC---C
T ss_pred CCCcCCC-CCCCCCEEECcCCcCCC-cCC---ccCCCCEEECCCCCCCCCc---ccCCCCcEEECCCCCCCC-CCC---c
Confidence 9987544 56999999999999884 333 3578999999999998654 345789999999999873 443 3
Q ss_pred CCCccEEEccCCcccCCCccccccCCCCcEEEccCCcccCCCCccccCCCCCCeEEecCCccccCcCccccccCCcEEEc
Q 040206 161 GCNLTSLRLSGNHLEGPLPPSLINCVNLQFLDVGNNNLSGPIPECLGNSTRLSFLDVGNNSLSGPIPECLANSTLEILDM 240 (347)
Q Consensus 161 ~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~L 240 (347)
+++|+.|++++|.++ .++. .+++|+.|++++|.+.+ +| ..+++|+.|++++|.++.... ..++|+.|++
T Consensus 200 ~~~L~~L~L~~N~l~-~l~~---~~~~L~~L~Ls~N~L~~-lp---~~l~~L~~L~Ls~N~L~~lp~---~~~~L~~L~L 268 (622)
T 3g06_A 200 PSELYKLWAYNNRLT-SLPA---LPSGLKELIVSGNRLTS-LP---VLPSELKELMVSGNRLTSLPM---LPSGLLSLSV 268 (622)
T ss_dssp CTTCCEEECCSSCCS-SCCC---CCTTCCEEECCSSCCSC-CC---CCCTTCCEEECCSSCCSCCCC---CCTTCCEEEC
T ss_pred cchhhEEECcCCccc-ccCC---CCCCCCEEEccCCccCc-CC---CCCCcCcEEECCCCCCCcCCc---ccccCcEEeC
Confidence 478999999999988 3443 35889999999999985 44 456899999999999985443 4579999999
Q ss_pred ccCcccccCChhhhccccccCCCcCccCCCCCcEEEccCCccCCccchhhhhccC
Q 040206 241 RMNKFSGSLPQNICKKLCFGPLPPSLVNCQYLEVLDVGNNQIDDTFLYWLDVLLQ 295 (347)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~ 295 (347)
++|.++ .+|..+..+++|+.|++++|.+++..+..+..+++
T Consensus 269 s~N~L~--------------~lp~~l~~l~~L~~L~L~~N~l~~~~~~~l~~L~~ 309 (622)
T 3g06_A 269 YRNQLT--------------RLPESLIHLSSETTVNLEGNPLSERTLQALREITS 309 (622)
T ss_dssp CSSCCC--------------SCCGGGGGSCTTCEEECCSCCCCHHHHHHHHHHHH
T ss_pred CCCCCC--------------cCCHHHhhccccCEEEecCCCCCCcCHHHHHhccc
Confidence 999999 36667889999999999999999877777766543
No 63
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.93 E-value=7e-28 Score=218.95 Aligned_cols=298 Identities=20% Similarity=0.206 Sum_probs=220.8
Q ss_pred CceEEEecCCCCCC-CCh-hhhcCC----CccEEeccCCccccc----CChhhhhcCCCcccEEEcCCCcCCCCCC----
Q 040206 1 KTIKTQVKTCNISE-FPD-ILRTQH----QLEWLDLSKNQIRGR----IPSWMWDIGVHTLQFLILSQNVLTSIDH---- 66 (347)
Q Consensus 1 ~l~~l~l~~~~~~~-~~~-~~~~~~----~L~~L~l~~~~~~~~----~~~~~~~~~~~~L~~L~l~~~~l~~~~~---- 66 (347)
+|++|++++|.+.. .+. .+..++ +|++|++++|.+++. ++..+. .+++|++|++++|.+++...
T Consensus 57 ~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~--~~~~L~~L~Ls~n~i~~~~~~~l~ 134 (461)
T 1z7x_W 57 ALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLR--TLPTLQELHLSDNLLGDAGLQLLC 134 (461)
T ss_dssp TCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHHHHHHHTT--SCTTCCEEECCSSBCHHHHHHHHH
T ss_pred CcCEEeCCCCcCChHHHHHHHHHHhhCCCceeEEEccCCCCCHHHHHHHHHHHc--cCCceeEEECCCCcCchHHHHHHH
Confidence 47899999999883 333 334455 799999999998853 355555 44999999999998865432
Q ss_pred ----CCCCCCcEEEccCCCCCccCC----C---CCCCccEEEcccCcccccCCcccc-----CCCCccEEEcccCccccc
Q 040206 67 ----LPWKNLQYLTLDSNLLQGSLP----D---LPPHMVQLLISNNSLTGEIPSSFC-----NLSSIQYLNLSNNSLSGQ 130 (347)
Q Consensus 67 ----~~~~~L~~L~l~~~~~~~~~~----~---~~~~L~~L~l~~~~~~~~~~~~~~-----~l~~L~~L~l~~~~~~~~ 130 (347)
...++|++|++++|.++.... . ..++|++|++++|.+....+..+. ..++|++|++++|.+...
T Consensus 135 ~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~ 214 (461)
T 1z7x_W 135 EGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSD 214 (461)
T ss_dssp HHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTT
T ss_pred HHHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHH
Confidence 234679999999999885332 1 138999999999998754333333 356999999999988753
Q ss_pred C----C-cccCCccccEEECCCCcccccc-----CccCCCCCCccEEEccCCcccCC----CccccccCCCCcEEEccCC
Q 040206 131 I----P-QCLGNSTLETLDLGMNNFQGSI-----PQTNAKGCNLTSLRLSGNHLEGP----LPPSLINCVNLQFLDVGNN 196 (347)
Q Consensus 131 ~----~-~~~~~~~L~~L~l~~~~~~~~~-----~~~~~~~~~L~~L~l~~~~~~~~----~~~~l~~~~~L~~L~l~~n 196 (347)
. + ....+++|++|++++|.+.... +..+..+++|++|++++|.++.. .+..+..+++|++|++++|
T Consensus 215 ~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n 294 (461)
T 1z7x_W 215 NCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGN 294 (461)
T ss_dssp HHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTC
T ss_pred HHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCC
Confidence 1 2 2224679999999999875432 33344678999999999998743 4566777999999999999
Q ss_pred cccCCCCcccc-----CCCCCCeEEecCCccccCcCccc-----cccCCcEEEcccCcccccCChhhhccccccCCCcCc
Q 040206 197 NLSGPIPECLG-----NSTRLSFLDVGNNSLSGPIPECL-----ANSTLEILDMRMNKFSGSLPQNICKKLCFGPLPPSL 266 (347)
Q Consensus 197 ~~~~~~~~~l~-----~~~~L~~L~l~~~~~~~~~~~~~-----~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~l~~~~ 266 (347)
.+.+..+..+. ..++|+.|++++|.+++.....+ ..++|+.|++++|.+.+..+..++. .+
T Consensus 295 ~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~---------~l 365 (461)
T 1z7x_W 295 ELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQ---------GL 365 (461)
T ss_dssp CCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHH---------HH
T ss_pred CCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHH---------HH
Confidence 88644333332 33699999999999886543222 2279999999999998765554322 22
Q ss_pred c-CCCCCcEEEccCCccCC----ccchhhhhccCCCEEEcccceeecc
Q 040206 267 V-NCQYLEVLDVGNNQIDD----TFLYWLDVLLQLQVLILRSNRFWGP 309 (347)
Q Consensus 267 ~-~~~~L~~L~L~~n~i~~----~~~~~~~~l~~L~~l~L~~n~~~~~ 309 (347)
. .+++|++|++++|.+++ ..+..+..+++|++|++++|++++.
T Consensus 366 ~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~i~~~ 413 (461)
T 1z7x_W 366 GQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDA 413 (461)
T ss_dssp TSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCHH
T ss_pred cCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCccEEECCCCCCCHH
Confidence 2 26789999999999986 5677788899999999999999875
No 64
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.92 E-value=6.4e-25 Score=192.41 Aligned_cols=269 Identities=17% Similarity=0.118 Sum_probs=216.2
Q ss_pred CCCcccEEEcCCCcCCCCCCCCCCCCcEEEccCCCCCccCCC---CCCCccEEEcccCcccccCCccccCCCCccEEEcc
Q 040206 47 GVHTLQFLILSQNVLTSIDHLPWKNLQYLTLDSNLLQGSLPD---LPPHMVQLLISNNSLTGEIPSSFCNLSSIQYLNLS 123 (347)
Q Consensus 47 ~~~~L~~L~l~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~---~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~ 123 (347)
.|+.....+.+++.++.++..-.++|++|++++|.+...... .+++|++|++++|.+....+..+.++++|++|+++
T Consensus 29 ~C~~~~~c~~~~~~l~~iP~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls 108 (353)
T 2z80_A 29 SCDRNGICKGSSGSLNSIPSGLTEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLS 108 (353)
T ss_dssp EECTTSEEECCSTTCSSCCTTCCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECC
T ss_pred CCCCCeEeeCCCCCcccccccccccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECC
Confidence 456677789999999999987778999999999999876553 35899999999999998878889999999999999
Q ss_pred cCcccccCCccc-CCccccEEECCCCccccccC-ccCCCCCCccEEEccCC-cccCCCccccccCCCCcEEEccCCcccC
Q 040206 124 NNSLSGQIPQCL-GNSTLETLDLGMNNFQGSIP-QTNAKGCNLTSLRLSGN-HLEGPLPPSLINCVNLQFLDVGNNNLSG 200 (347)
Q Consensus 124 ~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~-~~~~~~~~~l~~~~~L~~L~l~~n~~~~ 200 (347)
+|.+....+..+ .+++|++|++++|.+....+ ..+..+++|++|++++| .+....+..+..+++|++|++++|.+.+
T Consensus 109 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~ 188 (353)
T 2z80_A 109 YNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQS 188 (353)
T ss_dssp SSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCE
T ss_pred CCcCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCc
Confidence 999987666533 57899999999999884443 47889999999999998 4665666788999999999999999988
Q ss_pred CCCccccCCCCCCeEEecCCccccCcCcccc-ccCCcEEEcccCcccccCChhhhccccccCCCcCccCCCCCcEEEccC
Q 040206 201 PIPECLGNSTRLSFLDVGNNSLSGPIPECLA-NSTLEILDMRMNKFSGSLPQNICKKLCFGPLPPSLVNCQYLEVLDVGN 279 (347)
Q Consensus 201 ~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~-~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~ 279 (347)
..+..+..+++|++|++++|.+......... .++|+.|++++|.+++..+..+ + ....+..++.+++++
T Consensus 189 ~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l---------~-~~~~~~~l~~l~L~~ 258 (353)
T 2z80_A 189 YEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSEL---------S-TGETNSLIKKFTFRN 258 (353)
T ss_dssp ECTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC----------------CCCCCCEEEEES
T ss_pred cCHHHHhccccCCeecCCCCccccchhhhhhhcccccEEECCCCcccccccccc---------c-cccccchhhcccccc
Confidence 8888999999999999999998744433333 4899999999999996543321 1 234567788999999
Q ss_pred CccCC----ccchhhhhccCCCEEEcccceeecccCCc-cccceeeeeeEee
Q 040206 280 NQIDD----TFLYWLDVLLQLQVLILRSNRFWGPIGKL-RSRWSGHFIVRTV 326 (347)
Q Consensus 280 n~i~~----~~~~~~~~l~~L~~l~L~~n~~~~~~~~~-~~~~~~~~~~~~~ 326 (347)
+.+.+ ..+..+..+++|+.|++++|.++ .+|.. +..+..+..+...
T Consensus 259 ~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~-~i~~~~~~~l~~L~~L~L~ 309 (353)
T 2z80_A 259 VKITDESLFQVMKLLNQISGLLELEFSRNQLK-SVPDGIFDRLTSLQKIWLH 309 (353)
T ss_dssp CBCCHHHHHHHHHHHHTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECC
T ss_pred ccccCcchhhhHHHHhcccCCCEEECCCCCCC-ccCHHHHhcCCCCCEEEee
Confidence 98876 34566788999999999999998 46654 4666665555443
No 65
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.92 E-value=2.5e-25 Score=202.71 Aligned_cols=243 Identities=21% Similarity=0.177 Sum_probs=161.6
Q ss_pred CCChhhhcCC----CccEEeccCCcccccCChhhhhcCCCcccEEEcCCCcCCCCCC-CCCCCCcEEEccCCCCCccCCC
Q 040206 14 EFPDILRTQH----QLEWLDLSKNQIRGRIPSWMWDIGVHTLQFLILSQNVLTSIDH-LPWKNLQYLTLDSNLLQGSLPD 88 (347)
Q Consensus 14 ~~~~~~~~~~----~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~-~~~~~L~~L~l~~~~~~~~~~~ 88 (347)
.+|..+..+. +|+.|++++|.+.+..|..+..+ ++|++|++++|.+++... ..+++|++|++++|.+++..
T Consensus 21 ~l~~~l~~l~~~~~~L~~L~Ls~n~l~~~~~~~~~~l--~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N~l~~l~-- 96 (487)
T 3oja_A 21 SLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPF--TKLELLNLSSNVLYETLDLESLSTLRTLDLNNNYVQELL-- 96 (487)
T ss_dssp THHHHHHTTSTTGGGCCEEECCSSCCCCCCGGGGTTC--TTCCEEECTTSCCEEEEECTTCTTCCEEECCSSEEEEEE--
T ss_pred hhHHHHHHhcccCCCccEEEeeCCcCCCCCHHHHhCC--CCCCEEEeeCCCCCCCcccccCCCCCEEEecCCcCCCCC--
Confidence 5565555544 78888888888886555566543 788888888877764433 44555666665555544322
Q ss_pred CCCCccEEEcccCcccccCCccccCCCCccEEEcccCcccccCCcccCCccccEEECCCCccccccCccCCCCCCccEEE
Q 040206 89 LPPHMVQLLISNNSLTGEIPSSFCNLSSIQYLNLSNNSLSGQIPQCLGNSTLETLDLGMNNFQGSIPQTNAKGCNLTSLR 168 (347)
Q Consensus 89 ~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ 168 (347)
..++|+.|++++|.+....+. .+++|+.|++++|.+....|..+..+++|++|+
T Consensus 97 ------------------------~~~~L~~L~L~~N~l~~~~~~--~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~ 150 (487)
T 3oja_A 97 ------------------------VGPSIETLHAANNNISRVSCS--RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLD 150 (487)
T ss_dssp ------------------------ECTTCCEEECCSSCCCCEEEC--CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEE
T ss_pred ------------------------CCCCcCEEECcCCcCCCCCcc--ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEE
Confidence 124555566665555543332 235566677777766655566666677777777
Q ss_pred ccCCcccCCCccccc-cCCCCcEEEccCCcccCCCCccccCCCCCCeEEecCCccccCcCccccccCCcEEEcccCcccc
Q 040206 169 LSGNHLEGPLPPSLI-NCVNLQFLDVGNNNLSGPIPECLGNSTRLSFLDVGNNSLSGPIPECLANSTLEILDMRMNKFSG 247 (347)
Q Consensus 169 l~~~~~~~~~~~~l~-~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~ 247 (347)
+++|.++...+..+. .+++|+.|++++|.+.+.. ....+++|+.|++++|.+++..+.....++|+.|++++|.+++
T Consensus 151 Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~~--~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~Ls~N~l~~ 228 (487)
T 3oja_A 151 LKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVK--GQVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVL 228 (487)
T ss_dssp CTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEE--CCCCCTTCCEEECCSSCCCEECGGGGGGTTCSEEECTTSCCCE
T ss_pred CCCCCCCCcChHHHhhhCCcccEEecCCCcccccc--ccccCCCCCEEECCCCCCCCCCHhHcCCCCccEEEecCCcCcc
Confidence 777777655555554 6778888888888776442 2335778888888888887665555555788888888888873
Q ss_pred cCChhhhccccccCCCcCccCCCCCcEEEccCCccC-CccchhhhhccCCCEEEcc
Q 040206 248 SLPQNICKKLCFGPLPPSLVNCQYLEVLDVGNNQID-DTFLYWLDVLLQLQVLILR 302 (347)
Q Consensus 248 ~~~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~i~-~~~~~~~~~l~~L~~l~L~ 302 (347)
+|..+..+++|+.|++++|.+. +..+..+..++.|+.++++
T Consensus 229 --------------lp~~l~~l~~L~~L~l~~N~l~c~~~~~~~~~l~~L~~l~~~ 270 (487)
T 3oja_A 229 --------------IEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQ 270 (487)
T ss_dssp --------------ECTTCCCCTTCCEEECTTCCBCHHHHHHHHTTCHHHHHHHHH
T ss_pred --------------cchhhccCCCCCEEEcCCCCCcCcchHHHHHhCCCCcEEecc
Confidence 4556777888888888888887 4556667777777777776
No 66
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.92 E-value=1.3e-25 Score=193.64 Aligned_cols=233 Identities=21% Similarity=0.230 Sum_probs=177.7
Q ss_pred CceEEEecCCCCCCCC-hhhhcCCCccEEeccCCcccccCChhhhhcCCCcccEEEcCCCcCCCCCCCCCCCCcEEEccC
Q 040206 1 KTIKTQVKTCNISEFP-DILRTQHQLEWLDLSKNQIRGRIPSWMWDIGVHTLQFLILSQNVLTSIDHLPWKNLQYLTLDS 79 (347)
Q Consensus 1 ~l~~l~l~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~L~~L~l~~ 79 (347)
++++|++++|.+..++ .++.++++|++|++++|.+++..+ +. .+++|++|++++|.++.++.. ++|++|++++
T Consensus 35 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~--~l~~L~~L~Ls~n~l~~l~~~--~~L~~L~l~~ 108 (317)
T 3o53_A 35 NVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LE--SLSTLRTLDLNNNYVQELLVG--PSIETLHAAN 108 (317)
T ss_dssp GCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ET--TCTTCCEEECCSSEEEEEEEC--TTCCEEECCS
T ss_pred CCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hh--hcCCCCEEECcCCccccccCC--CCcCEEECCC
Confidence 4789999999999666 689999999999999999985544 44 459999999999998877644 8999999999
Q ss_pred CCCCccCCCCCCCccEEEcccCcccccCCccccCCCCccEEEcccCcccccCCccc--CCccccEEECCCCccccccCcc
Q 040206 80 NLLQGSLPDLPPHMVQLLISNNSLTGEIPSSFCNLSSIQYLNLSNNSLSGQIPQCL--GNSTLETLDLGMNNFQGSIPQT 157 (347)
Q Consensus 80 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~--~~~~L~~L~l~~~~~~~~~~~~ 157 (347)
|.+.......+++|++|++++|.+....+..+..+++|++|++++|.+....+..+ .+++|++|++++|.+... + .
T Consensus 109 n~l~~~~~~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~-~-~ 186 (317)
T 3o53_A 109 NNISRVSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV-K-G 186 (317)
T ss_dssp SCCSEEEECCCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE-E-C
T ss_pred CccCCcCccccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCccc-c-c
Confidence 99998877778899999999999987777788889999999999998886655444 356888888888887644 2 2
Q ss_pred CCCCCCccEEEccCCcccCCCccccccCCCCcEEEccCCcccCCCCccccCCCCCCeEEecCCccc-cCcCcccc-ccCC
Q 040206 158 NAKGCNLTSLRLSGNHLEGPLPPSLINCVNLQFLDVGNNNLSGPIPECLGNSTRLSFLDVGNNSLS-GPIPECLA-NSTL 235 (347)
Q Consensus 158 ~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~~~~~-~~~~~~~~-~~~L 235 (347)
...+++|++|++++|.++. .+..+..+++|+.|++++|.+. .+|..+..+++|+.|++++|.+. +..+..+. .++|
T Consensus 187 ~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~L~~N~l~-~l~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L 264 (317)
T 3o53_A 187 QVVFAKLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRV 264 (317)
T ss_dssp CCCCTTCCEEECCSSCCCE-ECGGGGGGTTCSEEECTTSCCC-EECTTCCCCTTCCEEECTTCCCBHHHHHHHHHTCHHH
T ss_pred ccccccCCEEECCCCcCCc-chhhhcccCcccEEECcCCccc-chhhHhhcCCCCCEEEccCCCccCcCHHHHHhccccc
Confidence 2346778888888887773 3445777778888888888777 34566777777777777777766 32222222 2455
Q ss_pred cEEEcccC
Q 040206 236 EILDMRMN 243 (347)
Q Consensus 236 ~~L~L~~~ 243 (347)
+.++++++
T Consensus 265 ~~l~l~~~ 272 (317)
T 3o53_A 265 QTVAKQTV 272 (317)
T ss_dssp HHHHHHHH
T ss_pred eEEECCCc
Confidence 66666533
No 67
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.92 E-value=6.8e-26 Score=195.04 Aligned_cols=244 Identities=24% Similarity=0.246 Sum_probs=156.9
Q ss_pred hhcCCCccEEeccCCcccccCChhhhhcCCCcccEEEcCCCcCCCCCC----C-------CCCCCcEEEccCCCCCccCC
Q 040206 19 LRTQHQLEWLDLSKNQIRGRIPSWMWDIGVHTLQFLILSQNVLTSIDH----L-------PWKNLQYLTLDSNLLQGSLP 87 (347)
Q Consensus 19 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~----~-------~~~~L~~L~l~~~~~~~~~~ 87 (347)
++..++|+.+++++|.+ .+|..+.. .|+.|++++|.++.... . .+++|++|
T Consensus 39 ~~~~~~L~~l~l~~n~l--~~p~~~~~----~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L------------ 100 (312)
T 1wwl_A 39 YGGGRSLEYLLKRVDTE--ADLGQFTD----IIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQEL------------ 100 (312)
T ss_dssp EEEEEECTTHHHHCCTT--CCCHHHHH----HHHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEE------------
T ss_pred EccCCCceeEeeccccc--ccHHHHHH----HHhhcccccccccCCCcCHHHHHHHHHhcCcCCccEE------------
Confidence 44556677777777776 55665543 16666666666543221 0 24445544
Q ss_pred CCCCCccEEEcccCcccccCCccc--cCCCCccEEEcccCcccccCCccc-CC-----ccccEEECCCCccccccCccCC
Q 040206 88 DLPPHMVQLLISNNSLTGEIPSSF--CNLSSIQYLNLSNNSLSGQIPQCL-GN-----STLETLDLGMNNFQGSIPQTNA 159 (347)
Q Consensus 88 ~~~~~L~~L~l~~~~~~~~~~~~~--~~l~~L~~L~l~~~~~~~~~~~~~-~~-----~~L~~L~l~~~~~~~~~~~~~~ 159 (347)
++++|.+.+..+..+ ..+++|++|++++|.+... +..+ .. ++|++|++++|.+....+..+.
T Consensus 101 ---------~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~ 170 (312)
T 1wwl_A 101 ---------TLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVR 170 (312)
T ss_dssp ---------EEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCC
T ss_pred ---------EccCCcccchhHHHHHHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhc
Confidence 455554444444443 5666677777776666654 2222 22 5677777777777656666777
Q ss_pred CCCCccEEEccCCcccCC--Ccccc--ccCCCCcEEEccCCcccC---CCCccccCCCCCCeEEecCCccccCcC--ccc
Q 040206 160 KGCNLTSLRLSGNHLEGP--LPPSL--INCVNLQFLDVGNNNLSG---PIPECLGNSTRLSFLDVGNNSLSGPIP--ECL 230 (347)
Q Consensus 160 ~~~~L~~L~l~~~~~~~~--~~~~l--~~~~~L~~L~l~~n~~~~---~~~~~l~~~~~L~~L~l~~~~~~~~~~--~~~ 230 (347)
.+++|++|++++|.+... .+..+ ..+++|++|++++|.+.+ .....+..+++|+.|++++|.+.+..+ ...
T Consensus 171 ~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~ 250 (312)
T 1wwl_A 171 VFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCD 250 (312)
T ss_dssp CCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCC
T ss_pred cCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhh
Confidence 777888888887775422 12223 677888888888887762 112334567888888888888876552 222
Q ss_pred cccCCcEEEcccCcccccCChhhhccccccCCCcCccCCCCCcEEEccCCccCCccchhhhhccCCCEEEcccceeec
Q 040206 231 ANSTLEILDMRMNKFSGSLPQNICKKLCFGPLPPSLVNCQYLEVLDVGNNQIDDTFLYWLDVLLQLQVLILRSNRFWG 308 (347)
Q Consensus 231 ~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~l~L~~n~~~~ 308 (347)
..++|+.|++++|.++ . +|..+. ++|++|++++|++++. +. +..+++|+.|++++|++++
T Consensus 251 ~l~~L~~L~Ls~N~l~-~-------------ip~~~~--~~L~~L~Ls~N~l~~~-p~-~~~l~~L~~L~L~~N~l~~ 310 (312)
T 1wwl_A 251 WPSQLNSLNLSFTGLK-Q-------------VPKGLP--AKLSVLDLSYNRLDRN-PS-PDELPQVGNLSLKGNPFLD 310 (312)
T ss_dssp CCTTCCEEECTTSCCS-S-------------CCSSCC--SEEEEEECCSSCCCSC-CC-TTTSCEEEEEECTTCTTTC
T ss_pred hcCCCCEEECCCCccC-h-------------hhhhcc--CCceEEECCCCCCCCC-hh-HhhCCCCCEEeccCCCCCC
Confidence 2478888888888888 3 443443 7888999999988876 44 7788889999999988875
No 68
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.91 E-value=1.1e-22 Score=171.46 Aligned_cols=205 Identities=23% Similarity=0.233 Sum_probs=119.5
Q ss_pred CCcEEEccCCCCCccCCCCCCCccEEEcccCcccccCCccccCCCCccEEEcccCcccccCCccc-CCccccEEECCCCc
Q 040206 71 NLQYLTLDSNLLQGSLPDLPPHMVQLLISNNSLTGEIPSSFCNLSSIQYLNLSNNSLSGQIPQCL-GNSTLETLDLGMNN 149 (347)
Q Consensus 71 ~L~~L~l~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~-~~~~L~~L~l~~~~ 149 (347)
+.+.++++++.++..+...++++++|++++|.+....+..+..+++|++|++++|.+....+..+ .+++|++|++++|.
T Consensus 17 ~~~~l~~~~~~l~~ip~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~ 96 (270)
T 2o6q_A 17 NKNSVDCSSKKLTAIPSNIPADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNK 96 (270)
T ss_dssp TTTEEECTTSCCSSCCSCCCTTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSSC
T ss_pred CCCEEEccCCCCCccCCCCCCCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCCc
Confidence 34555665555555444445566666666666665555567777777777777777765544443 34566666666666
Q ss_pred cccccCccCCCCCCccEEEccCCcccCCCccccccCCCCcEEEccCCcccCCCCccccCCCCCCeEEecCCccccCcCcc
Q 040206 150 FQGSIPQTNAKGCNLTSLRLSGNHLEGPLPPSLINCVNLQFLDVGNNNLSGPIPECLGNSTRLSFLDVGNNSLSGPIPEC 229 (347)
Q Consensus 150 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~ 229 (347)
+....+..+..+++|++|++++|.++...+..+..+++|++|++++|.+.+..+..+..+++|+.|++
T Consensus 97 l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L------------ 164 (270)
T 2o6q_A 97 LQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRL------------ 164 (270)
T ss_dssp CCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC------------
T ss_pred CCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEe------------
Confidence 55444444555555666666555555444444555555555555555555433333444445555444
Q ss_pred ccccCCcEEEcccCcccccCChhhhccccccCCCcCccCCCCCcEEEccCCccCCccchhhhhccCCCEEEcccceeecc
Q 040206 230 LANSTLEILDMRMNKFSGSLPQNICKKLCFGPLPPSLVNCQYLEVLDVGNNQIDDTFLYWLDVLLQLQVLILRSNRFWGP 309 (347)
Q Consensus 230 ~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~l~L~~n~~~~~ 309 (347)
++|.+.+. .+..+..+++|++|++++|.+++.++..+..+++|+.|++++|++...
T Consensus 165 -----------~~n~l~~~-------------~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~ 220 (270)
T 2o6q_A 165 -----------YNNQLKRV-------------PEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWDCT 220 (270)
T ss_dssp -----------CSSCCSCC-------------CTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCS
T ss_pred -----------cCCcCcEe-------------ChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCeeCC
Confidence 44444421 112355666777777777777666656666777777777777777665
Q ss_pred cC
Q 040206 310 IG 311 (347)
Q Consensus 310 ~~ 311 (347)
..
T Consensus 221 c~ 222 (270)
T 2o6q_A 221 CN 222 (270)
T ss_dssp SS
T ss_pred Cc
Confidence 43
No 69
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.91 E-value=7.2e-25 Score=188.65 Aligned_cols=240 Identities=22% Similarity=0.196 Sum_probs=160.8
Q ss_pred ceEEEecCCCCCCCChhhhcCCCccEEeccCCccc-ccCChhhh-----hcCCCcccEEEcCCCcCCCC-CC----CCCC
Q 040206 2 TIKTQVKTCNISEFPDILRTQHQLEWLDLSKNQIR-GRIPSWMW-----DIGVHTLQFLILSQNVLTSI-DH----LPWK 70 (347)
Q Consensus 2 l~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~-~~~~~~~~-----~~~~~~L~~L~l~~~~l~~~-~~----~~~~ 70 (347)
++++++++|.+ .+|..+... |+.|++++|.+. ..++..+. ...+++|++|++++|.+++. +. ..++
T Consensus 45 L~~l~l~~n~l-~~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~ 121 (312)
T 1wwl_A 45 LEYLLKRVDTE-ADLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGP 121 (312)
T ss_dssp CTTHHHHCCTT-CCCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSSCCSC
T ss_pred ceeEeeccccc-ccHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHHhcCC
Confidence 45567778888 889877655 999999999984 45565553 01349999999999998853 32 3456
Q ss_pred CCcEEEccCCCCCccCCCC-------CCCccEEEcccCcccccCCccccCCCCccEEEcccCcccccCCcccCCccccEE
Q 040206 71 NLQYLTLDSNLLQGSLPDL-------PPHMVQLLISNNSLTGEIPSSFCNLSSIQYLNLSNNSLSGQIPQCLGNSTLETL 143 (347)
Q Consensus 71 ~L~~L~l~~~~~~~~~~~~-------~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L 143 (347)
+|++|++++|.+.+.+... +++|++|++++|.+....+..++.+++| ++|
T Consensus 122 ~L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L-----------------------~~L 178 (312)
T 1wwl_A 122 DLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPAL-----------------------STL 178 (312)
T ss_dssp CCSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSC-----------------------CEE
T ss_pred CccEEEccCCCCcchhHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCC-----------------------CEE
Confidence 7777777777776441110 1445555555555544444444444444 455
Q ss_pred ECCCCccccc--cCcc--CCCCCCccEEEccCCcccCC---CccccccCCCCcEEEccCCcccCCCC-ccccCCCCCCeE
Q 040206 144 DLGMNNFQGS--IPQT--NAKGCNLTSLRLSGNHLEGP---LPPSLINCVNLQFLDVGNNNLSGPIP-ECLGNSTRLSFL 215 (347)
Q Consensus 144 ~l~~~~~~~~--~~~~--~~~~~~L~~L~l~~~~~~~~---~~~~l~~~~~L~~L~l~~n~~~~~~~-~~l~~~~~L~~L 215 (347)
++++|.+.+. .+.. +..+++|++|++++|.++.. ....+..+++|+.|++++|.+.+..+ ..+..+++|+.|
T Consensus 179 ~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L 258 (312)
T 1wwl_A 179 DLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSL 258 (312)
T ss_dssp ECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEE
T ss_pred ECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEE
Confidence 5554443221 1112 25667788888888777621 11233567889999999998886553 455667899999
Q ss_pred EecCCccccCcCccccccCCcEEEcccCcccccCChhhhccccccCCCcCccCCCCCcEEEccCCccCC
Q 040206 216 DVGNNSLSGPIPECLANSTLEILDMRMNKFSGSLPQNICKKLCFGPLPPSLVNCQYLEVLDVGNNQIDD 284 (347)
Q Consensus 216 ~l~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~i~~ 284 (347)
++++|.++. .+..+. ++|+.|++++|++++ +|. +..+++|++|++++|.+++
T Consensus 259 ~Ls~N~l~~-ip~~~~-~~L~~L~Ls~N~l~~--------------~p~-~~~l~~L~~L~L~~N~l~~ 310 (312)
T 1wwl_A 259 NLSFTGLKQ-VPKGLP-AKLSVLDLSYNRLDR--------------NPS-PDELPQVGNLSLKGNPFLD 310 (312)
T ss_dssp ECTTSCCSS-CCSSCC-SEEEEEECCSSCCCS--------------CCC-TTTSCEEEEEECTTCTTTC
T ss_pred ECCCCccCh-hhhhcc-CCceEEECCCCCCCC--------------Chh-HhhCCCCCEEeccCCCCCC
Confidence 999999884 444333 789999999999984 444 7889999999999999875
No 70
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.91 E-value=1.1e-23 Score=191.71 Aligned_cols=213 Identities=22% Similarity=0.215 Sum_probs=176.9
Q ss_pred CceEEEecCCCCCCCC-hhhhcCCCccEEeccCCcccccCChhhhhcCCCcccEEEcCCCcCCCCCCCCCCCCcEEEccC
Q 040206 1 KTIKTQVKTCNISEFP-DILRTQHQLEWLDLSKNQIRGRIPSWMWDIGVHTLQFLILSQNVLTSIDHLPWKNLQYLTLDS 79 (347)
Q Consensus 1 ~l~~l~l~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~L~~L~l~~ 79 (347)
+|++|+|++|.+..++ .+|.++++|++|++++|.+++..+ +. .+++|++|++++|.++.++.. ++|++|++++
T Consensus 35 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~--~l~~L~~L~Ls~N~l~~l~~~--~~L~~L~L~~ 108 (487)
T 3oja_A 35 NVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LE--SLSTLRTLDLNNNYVQELLVG--PSIETLHAAN 108 (487)
T ss_dssp GCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CT--TCTTCCEEECCSSEEEEEEEC--TTCCEEECCS
T ss_pred CccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cc--cCCCCCEEEecCCcCCCCCCC--CCcCEEECcC
Confidence 3789999999999665 689999999999999999986555 44 459999999999999887654 8999999999
Q ss_pred CCCCccCCCCCCCccEEEcccCcccccCCccccCCCCccEEEcccCcccccCCccc--CCccccEEECCCCccccccCcc
Q 040206 80 NLLQGSLPDLPPHMVQLLISNNSLTGEIPSSFCNLSSIQYLNLSNNSLSGQIPQCL--GNSTLETLDLGMNNFQGSIPQT 157 (347)
Q Consensus 80 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~--~~~~L~~L~l~~~~~~~~~~~~ 157 (347)
|.+....+..+++|+.|++++|.+....+..+..+++|+.|++++|.+....+..+ .+++|+.|++++|.+.... .
T Consensus 109 N~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~~--~ 186 (487)
T 3oja_A 109 NNISRVSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVK--G 186 (487)
T ss_dssp SCCCCEEECCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEE--C
T ss_pred CcCCCCCccccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCcccccc--c
Confidence 99998888788999999999999998878888999999999999999987665554 4678999999999887442 2
Q ss_pred CCCCCCccEEEccCCcccCCCccccccCCCCcEEEccCCcccCCCCccccCCCCCCeEEecCCccc
Q 040206 158 NAKGCNLTSLRLSGNHLEGPLPPSLINCVNLQFLDVGNNNLSGPIPECLGNSTRLSFLDVGNNSLS 223 (347)
Q Consensus 158 ~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~~~~~ 223 (347)
...+++|++|++++|.++. .+..+..+++|+.|++++|.+.+ +|..+..+++|+.|++++|.+.
T Consensus 187 ~~~l~~L~~L~Ls~N~l~~-~~~~~~~l~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~l~~N~l~ 250 (487)
T 3oja_A 187 QVVFAKLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFH 250 (487)
T ss_dssp CCCCTTCCEEECCSSCCCE-ECGGGGGGTTCSEEECTTSCCCE-ECTTCCCCTTCCEEECTTCCBC
T ss_pred cccCCCCCEEECCCCCCCC-CCHhHcCCCCccEEEecCCcCcc-cchhhccCCCCCEEEcCCCCCc
Confidence 3357888888888888874 34457788888888888888874 5666777888888888888776
No 71
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.90 E-value=3e-22 Score=169.28 Aligned_cols=219 Identities=18% Similarity=0.118 Sum_probs=162.4
Q ss_pred EcCCCcCCCCCCCCCCCCcEEEccCCCCCccCCCC---CCCccEEEcccCcccccCCccccCCCCccEEEcccCcccccC
Q 040206 55 ILSQNVLTSIDHLPWKNLQYLTLDSNLLQGSLPDL---PPHMVQLLISNNSLTGEIPSSFCNLSSIQYLNLSNNSLSGQI 131 (347)
Q Consensus 55 ~l~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~~---~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~ 131 (347)
+..+..++.++..-.++|++|++++|.+....... +++|++|++++|.+....+..+..+++|++|++++|.+....
T Consensus 13 ~c~~~~l~~ip~~l~~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~ 92 (276)
T 2z62_A 13 QCMELNFYKIPDNLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLA 92 (276)
T ss_dssp ECTTSCCSSCCSSSCTTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEEC
T ss_pred EecCCCccccCCCCCCCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccC
Confidence 33344444444433345556666655555443322 356677777777766566667788888888888888887666
Q ss_pred Cccc-CCccccEEECCCCccccccCccCCCCCCccEEEccCCcccCC-CccccccCCCCcEEEccCCcccCCCCccccCC
Q 040206 132 PQCL-GNSTLETLDLGMNNFQGSIPQTNAKGCNLTSLRLSGNHLEGP-LPPSLINCVNLQFLDVGNNNLSGPIPECLGNS 209 (347)
Q Consensus 132 ~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~~ 209 (347)
+..+ .+++|++|++++|.+....+..+..+++|++|++++|.++.. .+..++.+++|++|++++|.+.+..+..+..+
T Consensus 93 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l 172 (276)
T 2z62_A 93 LGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVL 172 (276)
T ss_dssp TTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHH
T ss_pred hhhhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhh
Confidence 5544 567888888888888766666788889999999999998754 47889999999999999999987666677666
Q ss_pred CCCC----eEEecCCccccCcCccccccCCcEEEcccCcccccCChhhhccccccCCCcCccCCCCCcEEEccCCccCCc
Q 040206 210 TRLS----FLDVGNNSLSGPIPECLANSTLEILDMRMNKFSGSLPQNICKKLCFGPLPPSLVNCQYLEVLDVGNNQIDDT 285 (347)
Q Consensus 210 ~~L~----~L~l~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~i~~~ 285 (347)
++|+ .+++++|.+.+..+..+...+|+.|++++|.+++. .+..+..+++|++|++++|.+...
T Consensus 173 ~~L~~l~l~L~ls~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~-------------~~~~~~~l~~L~~L~l~~N~~~c~ 239 (276)
T 2z62_A 173 HQMPLLNLSLDLSLNPMNFIQPGAFKEIRLKELALDTNQLKSV-------------PDGIFDRLTSLQKIWLHTNPWDCS 239 (276)
T ss_dssp HTCTTCCEEEECCSSCCCEECTTSSCSCCEEEEECCSSCCSCC-------------CTTTTTTCCSCCEEECCSSCBCCC
T ss_pred hhccccceeeecCCCcccccCccccCCCcccEEECCCCceeec-------------CHhHhcccccccEEEccCCccccc
Confidence 6666 89999999987777777777999999999999842 123468899999999999999754
Q ss_pred c
Q 040206 286 F 286 (347)
Q Consensus 286 ~ 286 (347)
.
T Consensus 240 c 240 (276)
T 2z62_A 240 C 240 (276)
T ss_dssp T
T ss_pred C
Confidence 3
No 72
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.90 E-value=5.4e-22 Score=168.59 Aligned_cols=200 Identities=25% Similarity=0.200 Sum_probs=138.4
Q ss_pred CCCCcEEEccCCCCCccCCCCCCCccEEEcccCcccccCCccccCCCCccEEEcccCcccccCCcccCCccccEEECCCC
Q 040206 69 WKNLQYLTLDSNLLQGSLPDLPPHMVQLLISNNSLTGEIPSSFCNLSSIQYLNLSNNSLSGQIPQCLGNSTLETLDLGMN 148 (347)
Q Consensus 69 ~~~L~~L~l~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~ 148 (347)
++++++++++++.++..+...+++++.|++++|.+....+..+..+++|+.|++++|.+...... ..+++|+.|++++|
T Consensus 9 l~~l~~l~~~~~~l~~ip~~~~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~l~~L~~L~Ls~N 87 (290)
T 1p9a_G 9 VASHLEVNCDKRNLTALPPDLPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD-GTLPVLGTLDLSHN 87 (290)
T ss_dssp STTCCEEECTTSCCSSCCSCCCTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECC-SCCTTCCEEECCSS
T ss_pred cCCccEEECCCCCCCcCCCCCCCCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCC-CCCCcCCEEECCCC
Confidence 45566666666666655555556667777777777666666778888888888888887754433 45567888888888
Q ss_pred ccccccCccCCCCCCccEEEccCCcccCCCccccccCCCCcEEEccCCcccCCCCccccCCCCCCeEEecCCccccCcCc
Q 040206 149 NFQGSIPQTNAKGCNLTSLRLSGNHLEGPLPPSLINCVNLQFLDVGNNNLSGPIPECLGNSTRLSFLDVGNNSLSGPIPE 228 (347)
Q Consensus 149 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~ 228 (347)
.+. ..|..+..+++|++|++++|+++...+..+..+++|+.|++++|.+.+..+..+..+++|+.|++++|.++.....
T Consensus 88 ~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~ 166 (290)
T 1p9a_G 88 QLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAG 166 (290)
T ss_dssp CCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTT
T ss_pred cCC-cCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCCccCHH
Confidence 776 5666677777788888888877766556677777888888888877766666667777777777777777755544
Q ss_pred ccc-ccCCcEEEcccCcccccCChhhhccccccCCCcCccCCCCCcEEEccCCccCC
Q 040206 229 CLA-NSTLEILDMRMNKFSGSLPQNICKKLCFGPLPPSLVNCQYLEVLDVGNNQIDD 284 (347)
Q Consensus 229 ~~~-~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~i~~ 284 (347)
.+. .++|+.|++++|.+. .+|..+..+++|+.+++++|.+..
T Consensus 167 ~~~~l~~L~~L~L~~N~l~--------------~ip~~~~~~~~L~~l~L~~Np~~C 209 (290)
T 1p9a_G 167 LLNGLENLDTLLLQENSLY--------------TIPKGFFGSHLLPFAFLHGNPWLC 209 (290)
T ss_dssp TTTTCTTCCEEECCSSCCC--------------CCCTTTTTTCCCSEEECCSCCBCC
T ss_pred HhcCcCCCCEEECCCCcCC--------------ccChhhcccccCCeEEeCCCCccC
Confidence 433 367777777777776 344455556667777777776653
No 73
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.88 E-value=4.8e-22 Score=167.60 Aligned_cols=227 Identities=18% Similarity=0.134 Sum_probs=157.2
Q ss_pred cccEEEcCCCcCCCCCC-CCCCCCcEEEccCCCCCccCCCCCCCccEEEcccCcccccCCccccCCCCccEEEcccCccc
Q 040206 50 TLQFLILSQNVLTSIDH-LPWKNLQYLTLDSNLLQGSLPDLPPHMVQLLISNNSLTGEIPSSFCNLSSIQYLNLSNNSLS 128 (347)
Q Consensus 50 ~L~~L~l~~~~l~~~~~-~~~~~L~~L~l~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~ 128 (347)
.+..+++..+.+.+... ..+++|+.|+++++.+... ..+..+++|++|++++|.+.
T Consensus 20 ~l~~l~l~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~-----------------------~~l~~l~~L~~L~l~~n~l~ 76 (272)
T 3rfs_A 20 ETIKANLKKKSVTDAVTQNELNSIDQIIANNSDIKSV-----------------------QGIQYLPNVRYLALGGNKLH 76 (272)
T ss_dssp HHHHHHHTCSCTTSEECHHHHTTCCEEECTTSCCCCC-----------------------TTGGGCTTCCEEECTTSCCC
T ss_pred HHHHHHhcCcccccccccccccceeeeeeCCCCcccc-----------------------cccccCCCCcEEECCCCCCC
Confidence 34444555554444322 3445566666655554421 23556666777777766665
Q ss_pred ccCCcccCCccccEEECCCCccccccCccCCCCCCccEEEccCCcccCCCccccccCCCCcEEEccCCcccCCCCccccC
Q 040206 129 GQIPQCLGNSTLETLDLGMNNFQGSIPQTNAKGCNLTSLRLSGNHLEGPLPPSLINCVNLQFLDVGNNNLSGPIPECLGN 208 (347)
Q Consensus 129 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~ 208 (347)
.. +....+++|++|++++|.+....+..+..+++|++|++++|.++...+..++.+++|++|++++|.+.+..+..+..
T Consensus 77 ~~-~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~ 155 (272)
T 3rfs_A 77 DI-SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDK 155 (272)
T ss_dssp CC-GGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTT
T ss_pred Cc-hhhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhcc
Confidence 42 33345567777777777776555556677778888888888877666666777888888888888887666666778
Q ss_pred CCCCCeEEecCCccccCcCcccc-ccCCcEEEcccCcccccCChhhhccccccCCCcCccCCCCCcEEEccCCccCCccc
Q 040206 209 STRLSFLDVGNNSLSGPIPECLA-NSTLEILDMRMNKFSGSLPQNICKKLCFGPLPPSLVNCQYLEVLDVGNNQIDDTFL 287 (347)
Q Consensus 209 ~~~L~~L~l~~~~~~~~~~~~~~-~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~i~~~~~ 287 (347)
+++|+.|++++|.+++..+..+. .++|+.|++++|.+.+. .+..+..+++|++|++++|.+.+
T Consensus 156 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~-------------~~~~~~~l~~L~~L~l~~N~~~~--- 219 (272)
T 3rfs_A 156 LTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSV-------------PDGVFDRLTSLQYIWLHDNPWDC--- 219 (272)
T ss_dssp CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCC-------------CTTTTTTCTTCCEEECCSSCBCC---
T ss_pred CccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCcc-------------CHHHHhCCcCCCEEEccCCCccc---
Confidence 88888888888888766555433 47888888888888853 23357788999999999998763
Q ss_pred hhhhhccCCCEEEcccceeecccCCccccceee
Q 040206 288 YWLDVLLQLQVLILRSNRFWGPIGKLRSRWSGH 320 (347)
Q Consensus 288 ~~~~~l~~L~~l~L~~n~~~~~~~~~~~~~~~~ 320 (347)
.+++|+.+++++|.+.|.+|.++......
T Consensus 220 ----~~~~l~~l~~~~n~~~g~ip~~~~~~~~~ 248 (272)
T 3rfs_A 220 ----TCPGIRYLSEWINKHSGVVRNSAGSVAPD 248 (272)
T ss_dssp ----CTTTTHHHHHHHHHTGGGBBCTTSCBCGG
T ss_pred ----cCcHHHHHHHHHHhCCCcccCcccccCCC
Confidence 46688899999999999999887776654
No 74
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.88 E-value=6.8e-21 Score=160.37 Aligned_cols=196 Identities=21% Similarity=0.180 Sum_probs=115.9
Q ss_pred ccEEEcCCCcCCCCCCCCCCCCcEEEccCCCCCccCCCC---CCCccEEEcccCcccccCCccccCCCCccEEEcccCcc
Q 040206 51 LQFLILSQNVLTSIDHLPWKNLQYLTLDSNLLQGSLPDL---PPHMVQLLISNNSLTGEIPSSFCNLSSIQYLNLSNNSL 127 (347)
Q Consensus 51 L~~L~l~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~~---~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~ 127 (347)
.++++++++.++.++..-.+++++|++++|.+....... +++|++|++++|.+..+.+..|..+++|++|++++|.+
T Consensus 18 ~~~l~~~~~~l~~ip~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~l 97 (270)
T 2o6q_A 18 KNSVDCSSKKLTAIPSNIPADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKL 97 (270)
T ss_dssp TTEEECTTSCCSSCCSCCCTTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSSCC
T ss_pred CCEEEccCCCCCccCCCCCCCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCCcC
Confidence 344444444444444433344555555555444333211 25556666666655544445556677777777777776
Q ss_pred cccCCccc-CCccccEEECCCCccccccCccCCCCCCccEEEccCCcccCCCccccccCCCCcEEEccCCcccCCCCccc
Q 040206 128 SGQIPQCL-GNSTLETLDLGMNNFQGSIPQTNAKGCNLTSLRLSGNHLEGPLPPSLINCVNLQFLDVGNNNLSGPIPECL 206 (347)
Q Consensus 128 ~~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l 206 (347)
....+..+ .+++|++|++++|.+....+..+..+++|++|++++|.++...+..+..+++|+.|++++|.+.+..+..+
T Consensus 98 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~ 177 (270)
T 2o6q_A 98 QALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAF 177 (270)
T ss_dssp CCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTT
T ss_pred CcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeChhHh
Confidence 65554443 45577777777777765555666777777777777777775555556777778888888777776555566
Q ss_pred cCCCCCCeEEecCCccccCcCcccc-ccCCcEEEcccCccc
Q 040206 207 GNSTRLSFLDVGNNSLSGPIPECLA-NSTLEILDMRMNKFS 246 (347)
Q Consensus 207 ~~~~~L~~L~l~~~~~~~~~~~~~~-~~~L~~L~L~~~~~~ 246 (347)
..+++|+.|++++|.+++..+..+. .++|+.|++++|.+.
T Consensus 178 ~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~ 218 (270)
T 2o6q_A 178 DKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWD 218 (270)
T ss_dssp TTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred ccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCee
Confidence 6677777777777666643333222 244444444444443
No 75
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.88 E-value=3.5e-22 Score=168.43 Aligned_cols=220 Identities=20% Similarity=0.222 Sum_probs=154.3
Q ss_pred CccEEeccCCcccccCChhhhhcCCCcccEEEcCCCcCCCCCC-CCCCCCcEEEccCCCCCccC-CCCCCCccEEEcccC
Q 040206 24 QLEWLDLSKNQIRGRIPSWMWDIGVHTLQFLILSQNVLTSIDH-LPWKNLQYLTLDSNLLQGSL-PDLPPHMVQLLISNN 101 (347)
Q Consensus 24 ~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~-~~~~~L~~L~l~~~~~~~~~-~~~~~~L~~L~l~~~ 101 (347)
++..+++..+.+.+... ...+ ++|+.|+++++.++.++. ..+++|++|++++|.+.... ...+++|++|++++|
T Consensus 20 ~l~~l~l~~~~~~~~~~--~~~l--~~L~~L~l~~~~i~~~~~l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~L~~n 95 (272)
T 3rfs_A 20 ETIKANLKKKSVTDAVT--QNEL--NSIDQIIANNSDIKSVQGIQYLPNVRYLALGGNKLHDISALKELTNLTYLILTGN 95 (272)
T ss_dssp HHHHHHHTCSCTTSEEC--HHHH--TTCCEEECTTSCCCCCTTGGGCTTCCEEECTTSCCCCCGGGTTCTTCCEEECTTS
T ss_pred HHHHHHhcCcccccccc--cccc--cceeeeeeCCCCcccccccccCCCCcEEECCCCCCCCchhhcCCCCCCEEECCCC
Confidence 34444555555543322 2222 667777777776666654 45667777777777665432 122367777777777
Q ss_pred cccccCCccccCCCCccEEEcccCcccccCCccc-CCccccEEECCCCccccccCccCCCCCCccEEEccCCcccCCCcc
Q 040206 102 SLTGEIPSSFCNLSSIQYLNLSNNSLSGQIPQCL-GNSTLETLDLGMNNFQGSIPQTNAKGCNLTSLRLSGNHLEGPLPP 180 (347)
Q Consensus 102 ~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~ 180 (347)
.+....+..+..+++|++|++++|.+....+..+ .+++|++|++++|.+....+..+..+++|++|++++|.++...+.
T Consensus 96 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~ 175 (272)
T 3rfs_A 96 QLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEG 175 (272)
T ss_dssp CCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTT
T ss_pred ccCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHH
Confidence 7776666667788888888888888876666544 456888888888887766666677888888888888888866666
Q ss_pred ccccCCCCcEEEccCCcccCCCCccccCCCCCCeEEecCCccccCcCccccccCCcEEEcccCcccccCChhh
Q 040206 181 SLINCVNLQFLDVGNNNLSGPIPECLGNSTRLSFLDVGNNSLSGPIPECLANSTLEILDMRMNKFSGSLPQNI 253 (347)
Q Consensus 181 ~l~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~ 253 (347)
.++.+++|+.|++++|.+.+..+..+..+++|+.|++++|.+... .+.++.+++..|.+++.+|..+
T Consensus 176 ~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~------~~~l~~l~~~~n~~~g~ip~~~ 242 (272)
T 3rfs_A 176 VFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCT------CPGIRYLSEWINKHSGVVRNSA 242 (272)
T ss_dssp TTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCC------TTTTHHHHHHHHHTGGGBBCTT
T ss_pred HhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCcccc------CcHHHHHHHHHHhCCCcccCcc
Confidence 678888888888888888877777778888888888888876633 2467778888888887766643
No 76
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.88 E-value=6.2e-21 Score=162.04 Aligned_cols=201 Identities=22% Similarity=0.185 Sum_probs=112.9
Q ss_pred hhcCCCccEEeccCCcccccCChhhhhcCCCcccEEEcCCCcCCCCCC---CCCCCCcEEEccCCCCCccCCCCCCCccE
Q 040206 19 LRTQHQLEWLDLSKNQIRGRIPSWMWDIGVHTLQFLILSQNVLTSIDH---LPWKNLQYLTLDSNLLQGSLPDLPPHMVQ 95 (347)
Q Consensus 19 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~---~~~~~L~~L~l~~~~~~~~~~~~~~~L~~ 95 (347)
++++++++.+++++++++ .+|..+. ++++.|++++|.++.+.. ..+++|++|++++|.++....
T Consensus 6 ~~~l~~l~~l~~~~~~l~-~ip~~~~----~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-------- 72 (290)
T 1p9a_G 6 VSKVASHLEVNCDKRNLT-ALPPDLP----KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQV-------- 72 (290)
T ss_dssp EECSTTCCEEECTTSCCS-SCCSCCC----TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEEC--------
T ss_pred ccccCCccEEECCCCCCC-cCCCCCC----CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccC--------
Confidence 456666777777776666 5554442 456666776666665543 344556666666655543221
Q ss_pred EEcccCcccccCCccccCCCCccEEEcccCcccccCCcccCCccccEEECCCCccccccCccCCCCCCccEEEccCCccc
Q 040206 96 LLISNNSLTGEIPSSFCNLSSIQYLNLSNNSLSGQIPQCLGNSTLETLDLGMNNFQGSIPQTNAKGCNLTSLRLSGNHLE 175 (347)
Q Consensus 96 L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 175 (347)
...+++|++|++++|.+...+.....+++|+.|++++|.+....+..+..+++|++|++++|.++
T Consensus 73 ---------------~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~ 137 (290)
T 1p9a_G 73 ---------------DGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELK 137 (290)
T ss_dssp ---------------CSCCTTCCEEECCSSCCSSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCC
T ss_pred ---------------CCCCCcCCEEECCCCcCCcCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCC
Confidence 13445555555555555433333334445555555555555444455555666666666666665
Q ss_pred CCCccccccCCCCcEEEccCCcccCCCCccccCCCCCCeEEecCCccccCcCccccccCCcEEEcccCcccc
Q 040206 176 GPLPPSLINCVNLQFLDVGNNNLSGPIPECLGNSTRLSFLDVGNNSLSGPIPECLANSTLEILDMRMNKFSG 247 (347)
Q Consensus 176 ~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~ 247 (347)
...+..+..+++|+.|++++|.+.+..+..+..+++|+.|++++|.++......+...+|+.+++++|.+..
T Consensus 138 ~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~ip~~~~~~~~L~~l~L~~Np~~C 209 (290)
T 1p9a_G 138 TLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGNPWLC 209 (290)
T ss_dssp CCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCCCSEEECCSCCBCC
T ss_pred ccChhhcccccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCCccChhhcccccCCeEEeCCCCccC
Confidence 444444555666666666666665444445555666666666666666444444444566666666666553
No 77
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.87 E-value=4.9e-24 Score=189.06 Aligned_cols=261 Identities=18% Similarity=0.168 Sum_probs=124.0
Q ss_pred CCChhhhcCCCccEEeccCCcccccCChhhhhc--CCCcccEEEcCCCcCCCCCCCCCCCCcEEEccCCCCCccCCCCCC
Q 040206 14 EFPDILRTQHQLEWLDLSKNQIRGRIPSWMWDI--GVHTLQFLILSQNVLTSIDHLPWKNLQYLTLDSNLLQGSLPDLPP 91 (347)
Q Consensus 14 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~--~~~~L~~L~l~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~ 91 (347)
.++.++..+++|+.|++++|.+.+..+..+... .+++|++|++++|.+..+.......++.+. .....++
T Consensus 23 ~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~--------~~l~~~~ 94 (386)
T 2ca6_A 23 SVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLL--------QALLKCP 94 (386)
T ss_dssp TTSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHH--------HHHTTCT
T ss_pred HHHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHH--------HHHhhCC
Confidence 677788888999999999998886655443321 346777777776654433210000000000 0001113
Q ss_pred CccEEEcccCcccc----cCCccccCCCCccEEEcccCcccccCCcccCCccccEEECCCCccccccCccCCCC------
Q 040206 92 HMVQLLISNNSLTG----EIPSSFCNLSSIQYLNLSNNSLSGQIPQCLGNSTLETLDLGMNNFQGSIPQTNAKG------ 161 (347)
Q Consensus 92 ~L~~L~l~~~~~~~----~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~------ 161 (347)
+|++|++++|.+.. ..+..+..+++|++|++++|.+....+..+.. .+..+
T Consensus 95 ~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~-------------------~l~~l~~~~~~ 155 (386)
T 2ca6_A 95 KLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIAR-------------------ALQELAVNKKA 155 (386)
T ss_dssp TCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHH-------------------HHHHHHHHHHH
T ss_pred cccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHH-------------------HHHHHhhhhhc
Confidence 34444444444432 24445667777888888777765322211110 00001
Q ss_pred ---CCccEEEccCCcccCC-Cc---cccccCCCCcEEEccCCcccC-----CCCccccCCCCCCeEEecCCcccc----C
Q 040206 162 ---CNLTSLRLSGNHLEGP-LP---PSLINCVNLQFLDVGNNNLSG-----PIPECLGNSTRLSFLDVGNNSLSG----P 225 (347)
Q Consensus 162 ---~~L~~L~l~~~~~~~~-~~---~~l~~~~~L~~L~l~~n~~~~-----~~~~~l~~~~~L~~L~l~~~~~~~----~ 225 (347)
++|++|++++|.++.. .+ ..+..+++|++|++++|.+.. ..+..+..+++|+.|++++|.++. .
T Consensus 156 ~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~ 235 (386)
T 2ca6_A 156 KNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSA 235 (386)
T ss_dssp HTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHH
T ss_pred ccCCCCcEEECCCCCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHH
Confidence 3444444444444311 11 233344555555555554431 112244455555555555555431 1
Q ss_pred cCcc-ccccCCcEEEcccCcccccCChhhhccccccCCCcCc--cCCCCCcEEEccCCccCC----ccchhh-hhccCCC
Q 040206 226 IPEC-LANSTLEILDMRMNKFSGSLPQNICKKLCFGPLPPSL--VNCQYLEVLDVGNNQIDD----TFLYWL-DVLLQLQ 297 (347)
Q Consensus 226 ~~~~-~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~l~~~~--~~~~~L~~L~L~~n~i~~----~~~~~~-~~l~~L~ 297 (347)
.+.. ...++|+.|++++|.+++.+... ++..+ +.+++|++|+|++|.+++ ..+..+ ..+++|+
T Consensus 236 l~~~l~~~~~L~~L~L~~n~i~~~~~~~---------l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~ 306 (386)
T 2ca6_A 236 LAIALKSWPNLRELGLNDCLLSARGAAA---------VVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLL 306 (386)
T ss_dssp HHHHGGGCTTCCEEECTTCCCCHHHHHH---------HHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCC
T ss_pred HHHHHccCCCcCEEECCCCCCchhhHHH---------HHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCce
Confidence 1111 12245555555555555432221 12223 225566666666666654 233333 3456666
Q ss_pred EEEcccceeeccc
Q 040206 298 VLILRSNRFWGPI 310 (347)
Q Consensus 298 ~l~L~~n~~~~~~ 310 (347)
.|++++|++++..
T Consensus 307 ~L~l~~N~l~~~~ 319 (386)
T 2ca6_A 307 FLELNGNRFSEED 319 (386)
T ss_dssp EEECTTSBSCTTS
T ss_pred EEEccCCcCCcch
Confidence 6666666665544
No 78
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.86 E-value=1e-23 Score=197.44 Aligned_cols=301 Identities=12% Similarity=0.077 Sum_probs=160.9
Q ss_pred ceEEEecCCC-CC--CCChhhhcCCCccEEeccCCcccccCChh---hhhcCCCcccEEEcCCCcCCCCCC-------CC
Q 040206 2 TIKTQVKTCN-IS--EFPDILRTQHQLEWLDLSKNQIRGRIPSW---MWDIGVHTLQFLILSQNVLTSIDH-------LP 68 (347)
Q Consensus 2 l~~l~l~~~~-~~--~~~~~~~~~~~L~~L~l~~~~~~~~~~~~---~~~~~~~~L~~L~l~~~~l~~~~~-------~~ 68 (347)
|++|++++|. +. .++....++++|++|++++|.+++....+ +.. .+++|++|+++++.++.+.. ..
T Consensus 140 L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~-~~~~L~~L~L~~n~~~~~~~~~l~~~~~~ 218 (592)
T 3ogk_B 140 LETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQ-HNTSLEVLNFYMTEFAKISPKDLETIARN 218 (592)
T ss_dssp CCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHH-HCCCCCEEECTTCCCSSCCHHHHHHHHHH
T ss_pred CcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHh-cCCCccEEEeeccCCCccCHHHHHHHHhh
Confidence 6777777775 22 23344457777777777777766543221 222 34677777777776653332 23
Q ss_pred CCCCcEEEccCCCCCccC-----------------------------CCCCCCccEEEcccCcccccCCccccCCCCccE
Q 040206 69 WKNLQYLTLDSNLLQGSL-----------------------------PDLPPHMVQLLISNNSLTGEIPSSFCNLSSIQY 119 (347)
Q Consensus 69 ~~~L~~L~l~~~~~~~~~-----------------------------~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~ 119 (347)
+++|++|++++|.+.+.. ...+++|+.+.++++... ..+..+..+++|++
T Consensus 219 ~~~L~~L~L~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~-~l~~~~~~~~~L~~ 297 (592)
T 3ogk_B 219 CRSLVSVKVGDFEILELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPN-EMPILFPFAAQIRK 297 (592)
T ss_dssp CTTCCEEECSSCBGGGGHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCTT-TGGGGGGGGGGCCE
T ss_pred CCCCcEEeccCccHHHHHHHHhhhhHHHhhcccccccccchHHHHHHhhccccccccCccccchh-HHHHHHhhcCCCcE
Confidence 466666666666543210 001123333333222111 22333334445555
Q ss_pred EEcccCcccccCCc--ccC------------------------CccccEEECCC-----------Cccccc-cCccCCCC
Q 040206 120 LNLSNNSLSGQIPQ--CLG------------------------NSTLETLDLGM-----------NNFQGS-IPQTNAKG 161 (347)
Q Consensus 120 L~l~~~~~~~~~~~--~~~------------------------~~~L~~L~l~~-----------~~~~~~-~~~~~~~~ 161 (347)
|++++|.+...... ... +++|++|++++ +.+... .......+
T Consensus 298 L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~ 377 (592)
T 3ogk_B 298 LDLLYALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGC 377 (592)
T ss_dssp EEETTCCCCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHC
T ss_pred EecCCCcCCHHHHHHHHHhCcCCCEEeccCccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhC
Confidence 55555443211110 012 34455555552 222111 11112234
Q ss_pred CCccEEEccCCcccCCCcccccc-CCCCcEEEcc----CCcccCC-----CCccccCCCCCCeEEecCCc--cccCcCcc
Q 040206 162 CNLTSLRLSGNHLEGPLPPSLIN-CVNLQFLDVG----NNNLSGP-----IPECLGNSTRLSFLDVGNNS--LSGPIPEC 229 (347)
Q Consensus 162 ~~L~~L~l~~~~~~~~~~~~l~~-~~~L~~L~l~----~n~~~~~-----~~~~l~~~~~L~~L~l~~~~--~~~~~~~~ 229 (347)
++|++|++..+.++...+..+.. +++|+.|+++ .+.+.+. .+..+..+++|+.|+++.|. +++.....
T Consensus 378 ~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~ 457 (592)
T 3ogk_B 378 QELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSY 457 (592)
T ss_dssp TTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHH
T ss_pred ccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHH
Confidence 56666666555554333333433 6677777775 3344432 22234557777777776543 33322222
Q ss_pred cc--ccCCcEEEcccCcccccCChhhhccccccCCCcCccCCCCCcEEEccCCccCCc-cchhhhhccCCCEEEccccee
Q 040206 230 LA--NSTLEILDMRMNKFSGSLPQNICKKLCFGPLPPSLVNCQYLEVLDVGNNQIDDT-FLYWLDVLLQLQVLILRSNRF 306 (347)
Q Consensus 230 ~~--~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~i~~~-~~~~~~~l~~L~~l~L~~n~~ 306 (347)
+. .++|+.|++++|++++.. ++..+..|++|++|++++|.+++. .+..+..+++|++|++++|++
T Consensus 458 ~~~~~~~L~~L~L~~n~l~~~~------------~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~i 525 (592)
T 3ogk_B 458 IGQYSPNVRWMLLGYVGESDEG------------LMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRA 525 (592)
T ss_dssp HHHSCTTCCEEEECSCCSSHHH------------HHHHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEESCBC
T ss_pred HHHhCccceEeeccCCCCCHHH------------HHHHHhcCcccCeeeccCCCCcHHHHHHHHHhcCccCeeECcCCcC
Confidence 21 367888888888877531 233457789999999999998754 344456899999999999999
Q ss_pred ecccCCcccc
Q 040206 307 WGPIGKLRSR 316 (347)
Q Consensus 307 ~~~~~~~~~~ 316 (347)
++.....++.
T Consensus 526 t~~~~~~l~~ 535 (592)
T 3ogk_B 526 SMTGQDLMQM 535 (592)
T ss_dssp CTTCTTGGGG
T ss_pred CHHHHHHHHH
Confidence 8775554443
No 79
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.86 E-value=1.9e-21 Score=160.73 Aligned_cols=199 Identities=18% Similarity=0.178 Sum_probs=148.0
Q ss_pred CCCCccEEEcccCcccccCCccccCCCCccEEEcccCc-ccccCCccc-CCccccEEECCC-CccccccCccCCCCCCcc
Q 040206 89 LPPHMVQLLISNNSLTGEIPSSFCNLSSIQYLNLSNNS-LSGQIPQCL-GNSTLETLDLGM-NNFQGSIPQTNAKGCNLT 165 (347)
Q Consensus 89 ~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~-~~~~~~~~~-~~~~L~~L~l~~-~~~~~~~~~~~~~~~~L~ 165 (347)
.++++++|++++|.++.+.+..+..+++|++|++++|. +....+..+ .+++|++|++++ |.+....+..+..+++|+
T Consensus 29 ~~~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~ 108 (239)
T 2xwt_C 29 LPPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLK 108 (239)
T ss_dssp CCTTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCC
T ss_pred CCCcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCC
Confidence 44577777777777776666677788888888888886 766555444 567888888887 777755566777888888
Q ss_pred EEEccCCcccCCCccccccCCCCc---EEEccCC-cccCCCCccccCCCCCC-eEEecCCccccCcCccccccCCcEEEc
Q 040206 166 SLRLSGNHLEGPLPPSLINCVNLQ---FLDVGNN-NLSGPIPECLGNSTRLS-FLDVGNNSLSGPIPECLANSTLEILDM 240 (347)
Q Consensus 166 ~L~l~~~~~~~~~~~~l~~~~~L~---~L~l~~n-~~~~~~~~~l~~~~~L~-~L~l~~~~~~~~~~~~~~~~~L~~L~L 240 (347)
+|++++|.++. .|. +..+++|+ .|++++| .+.+..+..+..+++|+ .|++++|.++......+..++|+.|++
T Consensus 109 ~L~l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~~~~~~~L~~L~L 186 (239)
T 2xwt_C 109 FLGIFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNGTKLDAVYL 186 (239)
T ss_dssp EEEEEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEECTTTTTTCEEEEEEC
T ss_pred EEeCCCCCCcc-ccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcccCHhhcCCCCCCEEEc
Confidence 88888888874 444 77777777 8899988 88766666788888888 999988888755555555578888999
Q ss_pred ccCc-ccccCChhhhccccccCCCcCccCC-CCCcEEEccCCccCCccchhhhhccCCCEEEcccce
Q 040206 241 RMNK-FSGSLPQNICKKLCFGPLPPSLVNC-QYLEVLDVGNNQIDDTFLYWLDVLLQLQVLILRSNR 305 (347)
Q Consensus 241 ~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~-~~L~~L~L~~n~i~~~~~~~~~~l~~L~~l~L~~n~ 305 (347)
++|+ +++. -+..|..+ ++|++|++++|.++..++. .+++|+.|+++++.
T Consensus 187 ~~n~~l~~i-------------~~~~~~~l~~~L~~L~l~~N~l~~l~~~---~~~~L~~L~l~~~~ 237 (239)
T 2xwt_C 187 NKNKYLTVI-------------DKDAFGGVYSGPSLLDVSQTSVTALPSK---GLEHLKELIARNTW 237 (239)
T ss_dssp TTCTTCCEE-------------CTTTTTTCSBCCSEEECTTCCCCCCCCT---TCTTCSEEECTTC-
T ss_pred CCCCCcccC-------------CHHHhhccccCCcEEECCCCccccCChh---HhccCceeeccCcc
Confidence 9885 7742 12356777 8899999999988865543 56788888888764
No 80
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.86 E-value=1.2e-20 Score=161.73 Aligned_cols=207 Identities=22% Similarity=0.262 Sum_probs=106.2
Q ss_pred EEcCCCcCCCC-CCCCCCCCcEEEccCCCCCccCCCCCCCccEEEcccCcccccCCccccCCCCccEEEcccCcccccCC
Q 040206 54 LILSQNVLTSI-DHLPWKNLQYLTLDSNLLQGSLPDLPPHMVQLLISNNSLTGEIPSSFCNLSSIQYLNLSNNSLSGQIP 132 (347)
Q Consensus 54 L~l~~~~l~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~ 132 (347)
+.+..+.+++. ....+++|++|+++++.+.... .+..+++|++|++++|.+....+
T Consensus 24 ~~l~~~~~~~~~~~~~l~~L~~L~l~~~~i~~l~-----------------------~~~~l~~L~~L~L~~n~i~~~~~ 80 (308)
T 1h6u_A 24 IAAGKSNVTDTVTQADLDGITTLSAFGTGVTTIE-----------------------GVQYLNNLIGLELKDNQITDLAP 80 (308)
T ss_dssp HHTTCSSTTSEECHHHHHTCCEEECTTSCCCCCT-----------------------TGGGCTTCCEEECCSSCCCCCGG
T ss_pred HHhCCCCcCceecHHHcCCcCEEEeeCCCccCch-----------------------hhhccCCCCEEEccCCcCCCChh
Confidence 34444444442 2244567777777777665321 23344444444444444443322
Q ss_pred cccCCccccEEECCCCccccccCccCCCCCCccEEEccCCcccCCCccccccCCCCcEEEccCCcccCCCCccccCCCCC
Q 040206 133 QCLGNSTLETLDLGMNNFQGSIPQTNAKGCNLTSLRLSGNHLEGPLPPSLINCVNLQFLDVGNNNLSGPIPECLGNSTRL 212 (347)
Q Consensus 133 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L 212 (347)
...+++|++|++++|.+.. . ..+..+++|++|++++|.++.. + .+..+++|++|++++|.+.+..+ +..+++|
T Consensus 81 -~~~l~~L~~L~L~~n~l~~-~-~~~~~l~~L~~L~l~~n~l~~~-~-~l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L 153 (308)
T 1h6u_A 81 -LKNLTKITELELSGNPLKN-V-SAIAGLQSIKTLDLTSTQITDV-T-PLAGLSNLQVLYLDLNQITNISP--LAGLTNL 153 (308)
T ss_dssp -GTTCCSCCEEECCSCCCSC-C-GGGTTCTTCCEEECTTSCCCCC-G-GGTTCTTCCEEECCSSCCCCCGG--GGGCTTC
T ss_pred -HccCCCCCEEEccCCcCCC-c-hhhcCCCCCCEEECCCCCCCCc-h-hhcCCCCCCEEECCCCccCcCcc--ccCCCCc
Confidence 2233444444444444432 1 2344455555555555555432 2 25555556666666655553322 5555566
Q ss_pred CeEEecCCccccCcCccccccCCcEEEcccCcccccCChhhhccccccCCCcCccCCCCCcEEEccCCccCCccchhhhh
Q 040206 213 SFLDVGNNSLSGPIPECLANSTLEILDMRMNKFSGSLPQNICKKLCFGPLPPSLVNCQYLEVLDVGNNQIDDTFLYWLDV 292 (347)
Q Consensus 213 ~~L~l~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~ 292 (347)
+.|++++|.+++..+ ....++|+.|++++|.+++ ++. +..+++|++|++++|.+.+..+ +..
T Consensus 154 ~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~--------------~~~-l~~l~~L~~L~L~~N~l~~~~~--l~~ 215 (308)
T 1h6u_A 154 QYLSIGNAQVSDLTP-LANLSKLTTLKADDNKISD--------------ISP-LASLPNLIEVHLKNNQISDVSP--LAN 215 (308)
T ss_dssp CEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCC--------------CGG-GGGCTTCCEEECTTSCCCBCGG--GTT
T ss_pred cEEEccCCcCCCChh-hcCCCCCCEEECCCCccCc--------------Chh-hcCCCCCCEEEccCCccCcccc--ccC
Confidence 666666665553322 2233556666666666552 221 4556666666666666655432 556
Q ss_pred ccCCCEEEcccceeec
Q 040206 293 LLQLQVLILRSNRFWG 308 (347)
Q Consensus 293 l~~L~~l~L~~n~~~~ 308 (347)
+++|+.|++++|++++
T Consensus 216 l~~L~~L~l~~N~i~~ 231 (308)
T 1h6u_A 216 TSNLFIVTLTNQTITN 231 (308)
T ss_dssp CTTCCEEEEEEEEEEC
T ss_pred CCCCCEEEccCCeeec
Confidence 6666666666666655
No 81
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.86 E-value=4.4e-23 Score=181.19 Aligned_cols=260 Identities=20% Similarity=0.203 Sum_probs=131.7
Q ss_pred EEecCCCCC-CCChhhhcCCCccEEeccCCcccccCC----hhhhhcCCC-cccEEEcCCCcCCCCCCCCCCCCcEEEcc
Q 040206 5 TQVKTCNIS-EFPDILRTQHQLEWLDLSKNQIRGRIP----SWMWDIGVH-TLQFLILSQNVLTSIDHLPWKNLQYLTLD 78 (347)
Q Consensus 5 l~l~~~~~~-~~~~~~~~~~~L~~L~l~~~~~~~~~~----~~~~~~~~~-~L~~L~l~~~~l~~~~~~~~~~L~~L~l~ 78 (347)
..++.+.++ .+|+.+...++|++|++++|.+++..+ ..+.. ++ +|++|++++|.++......+..
T Consensus 3 ~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~--~~~~L~~L~Ls~N~l~~~~~~~l~~------- 73 (362)
T 3goz_A 3 YKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFAN--TPASVTSLNLSGNSLGFKNSDELVQ------- 73 (362)
T ss_dssp EECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHT--CCTTCCEEECCSSCGGGSCHHHHHH-------
T ss_pred cccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHh--CCCceeEEECcCCCCCHHHHHHHHH-------
Confidence 456666666 344444444557777777777764444 22322 24 4555555555444432211000
Q ss_pred CCCCCccCCCCCCCccEEEcccCcccccCCcc----ccCC-CCccEEEcccCcccccCCccc-----C-CccccEEECCC
Q 040206 79 SNLLQGSLPDLPPHMVQLLISNNSLTGEIPSS----FCNL-SSIQYLNLSNNSLSGQIPQCL-----G-NSTLETLDLGM 147 (347)
Q Consensus 79 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~----~~~l-~~L~~L~l~~~~~~~~~~~~~-----~-~~~L~~L~l~~ 147 (347)
.....+++|++|++++|.+....+.. +..+ ++|++|++++|.+.......+ . ..+|++|++++
T Consensus 74 ------~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~ 147 (362)
T 3goz_A 74 ------ILAAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRG 147 (362)
T ss_dssp ------HHHTSCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTT
T ss_pred ------HHhccCCCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccC
Confidence 00111256778888888877554443 3333 678888888887765443322 1 23677777777
Q ss_pred Ccccccc----CccCCCCC-CccEEEccCCcccCCCcccc----ccC-CCCcEEEccCCcccCC----CCccccC-CCCC
Q 040206 148 NNFQGSI----PQTNAKGC-NLTSLRLSGNHLEGPLPPSL----INC-VNLQFLDVGNNNLSGP----IPECLGN-STRL 212 (347)
Q Consensus 148 ~~~~~~~----~~~~~~~~-~L~~L~l~~~~~~~~~~~~l----~~~-~~L~~L~l~~n~~~~~----~~~~l~~-~~~L 212 (347)
|.+.... +..+...+ +|++|++++|.++...+..+ ..+ ++|++|++++|.+.+. ++..+.. .++|
T Consensus 148 N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L 227 (362)
T 3goz_A 148 NDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHV 227 (362)
T ss_dssp SCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTC
T ss_pred CcCCHHHHHHHHHHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCc
Confidence 7665322 12222333 66666666666654444322 233 3666666666666532 2223333 3366
Q ss_pred CeEEecCCccccCcCccc-----cccCCcEEEcccCcccccCChhhhccccccCCCcCccCCCCCcEEEccCCccCCc
Q 040206 213 SFLDVGNNSLSGPIPECL-----ANSTLEILDMRMNKFSGSLPQNICKKLCFGPLPPSLVNCQYLEVLDVGNNQIDDT 285 (347)
Q Consensus 213 ~~L~l~~~~~~~~~~~~~-----~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~i~~~ 285 (347)
+.|++++|.+.+.....+ ..++|+.|++++|.+.+..+... ..++..+..+++|+.|++++|.+.+.
T Consensus 228 ~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~------~~l~~~~~~l~~L~~LdL~~N~l~~~ 299 (362)
T 3goz_A 228 VSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQC------KALGAAFPNIQKIILVDKNGKEIHPS 299 (362)
T ss_dssp CEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHH------HHHHTTSTTCCEEEEECTTSCBCCGG
T ss_pred eEEECcCCCCCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHH------HHHHHHhccCCceEEEecCCCcCCCc
Confidence 666666666554333111 11456666666665443222211 11233444555566666666665543
No 82
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.86 E-value=2.3e-20 Score=155.35 Aligned_cols=179 Identities=21% Similarity=0.170 Sum_probs=130.5
Q ss_pred CccEEEcccCcccccCCcccCCccccEEECCCCccccccCccCCCCCCccEEEccCCcccCCCccccccCCCCcEEEccC
Q 040206 116 SIQYLNLSNNSLSGQIPQCLGNSTLETLDLGMNNFQGSIPQTNAKGCNLTSLRLSGNHLEGPLPPSLINCVNLQFLDVGN 195 (347)
Q Consensus 116 ~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~ 195 (347)
..+++++.++.+...+... .+.++.|++++|.+....+..+..+++|++|++++|.++...+..+..+++|++|++++
T Consensus 15 ~~~~l~~~~~~l~~~p~~~--~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 92 (251)
T 3m19_A 15 GKKEVDCQGKSLDSVPSGI--PADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLAN 92 (251)
T ss_dssp GGTEEECTTCCCSSCCSCC--CTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTT
T ss_pred CCeEEecCCCCccccCCCC--CCCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCC
Confidence 4556666666666443322 24677777777777666666677777888888888877766666677778888888888
Q ss_pred CcccCCCCccccCCCCCCeEEecCCccccCcCcccc-ccCCcEEEcccCcccccCChhhhccccccCCCcCccCCCCCcE
Q 040206 196 NNLSGPIPECLGNSTRLSFLDVGNNSLSGPIPECLA-NSTLEILDMRMNKFSGSLPQNICKKLCFGPLPPSLVNCQYLEV 274 (347)
Q Consensus 196 n~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~-~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~ 274 (347)
|.+.+..+..+..+++|+.|++++|.+++..+..+. .++|+.|++++|.+.+. .+..+..+++|++
T Consensus 93 n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~-------------~~~~~~~l~~L~~ 159 (251)
T 3m19_A 93 NQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSI-------------PAGAFDKLTNLQT 159 (251)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCC-------------CTTTTTTCTTCCE
T ss_pred CcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCcc-------------CHHHcCcCcCCCE
Confidence 888766666777788888888888887765555433 47888888888888742 1225777888888
Q ss_pred EEccCCccCCccchhhhhccCCCEEEcccceeecc
Q 040206 275 LDVGNNQIDDTFLYWLDVLLQLQVLILRSNRFWGP 309 (347)
Q Consensus 275 L~L~~n~i~~~~~~~~~~l~~L~~l~L~~n~~~~~ 309 (347)
|++++|.+.+..+..+..+++|+.|++++|++.+.
T Consensus 160 L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~ 194 (251)
T 3m19_A 160 LSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDCS 194 (251)
T ss_dssp EECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCTT
T ss_pred EECCCCcCCccCHHHHhCCCCCCEEEeeCCceeCC
Confidence 88888888877777788888888888888888776
No 83
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.86 E-value=3e-21 Score=165.85 Aligned_cols=219 Identities=21% Similarity=0.191 Sum_probs=160.6
Q ss_pred CCcEEEccCCCCCccCCC------CCCCccEEEcccCcccccCCccc--cCCCCccEEEcccCcccccCCc-----ccCC
Q 040206 71 NLQYLTLDSNLLQGSLPD------LPPHMVQLLISNNSLTGEIPSSF--CNLSSIQYLNLSNNSLSGQIPQ-----CLGN 137 (347)
Q Consensus 71 ~L~~L~l~~~~~~~~~~~------~~~~L~~L~l~~~~~~~~~~~~~--~~l~~L~~L~l~~~~~~~~~~~-----~~~~ 137 (347)
.++.+.+.++.++..... ..++|++|++++|.+....+..+ ..+++|++|++++|.+....+. ...+
T Consensus 65 ~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~ 144 (310)
T 4glp_A 65 RVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLK 144 (310)
T ss_dssp CCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBC
T ss_pred ceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhc
Confidence 466777777666421110 12568888888888887777776 7888899999999888753331 1246
Q ss_pred ccccEEECCCCccccccCccCCCCCCccEEEccCCcccCC----CccccccCCCCcEEEccCCcccCCCCc----cccCC
Q 040206 138 STLETLDLGMNNFQGSIPQTNAKGCNLTSLRLSGNHLEGP----LPPSLINCVNLQFLDVGNNNLSGPIPE----CLGNS 209 (347)
Q Consensus 138 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~----~~~~l~~~~~L~~L~l~~n~~~~~~~~----~l~~~ 209 (347)
++|++|++++|.+....+..+..+++|++|++++|++... .+..++.+++|++|++++|.+.. .+. .+..+
T Consensus 145 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~~l 223 (310)
T 4glp_A 145 PGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMET-PTGVCAALAAAG 223 (310)
T ss_dssp SCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCC-HHHHHHHHHHHT
T ss_pred cCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCc-hHHHHHHHHhcC
Confidence 6899999999988777778888889999999999986421 12234678899999999998863 222 24678
Q ss_pred CCCCeEEecCCccccCcCcccc-c---cCCcEEEcccCcccccCChhhhccccccCCCcCccCCCCCcEEEccCCccCCc
Q 040206 210 TRLSFLDVGNNSLSGPIPECLA-N---STLEILDMRMNKFSGSLPQNICKKLCFGPLPPSLVNCQYLEVLDVGNNQIDDT 285 (347)
Q Consensus 210 ~~L~~L~l~~~~~~~~~~~~~~-~---~~L~~L~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~i~~~ 285 (347)
++|++|++++|.+.+..+..+. . ++|++|++++|.++ . +|..+. ++|++|++++|++++.
T Consensus 224 ~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~-~-------------lp~~~~--~~L~~L~Ls~N~l~~~ 287 (310)
T 4glp_A 224 VQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLE-Q-------------VPKGLP--AKLRVLDLSSNRLNRA 287 (310)
T ss_dssp CCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCC-S-------------CCSCCC--SCCSCEECCSCCCCSC
T ss_pred CCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCC-c-------------hhhhhc--CCCCEEECCCCcCCCC
Confidence 8999999999998876443322 2 68999999999998 3 343332 6899999999999875
Q ss_pred cchhhhhccCCCEEEcccceeec
Q 040206 286 FLYWLDVLLQLQVLILRSNRFWG 308 (347)
Q Consensus 286 ~~~~~~~l~~L~~l~L~~n~~~~ 308 (347)
+. +..+++|+.|++++|++++
T Consensus 288 ~~--~~~l~~L~~L~L~~N~l~~ 308 (310)
T 4glp_A 288 PQ--PDELPEVDNLTLDGNPFLV 308 (310)
T ss_dssp CC--TTSCCCCSCEECSSTTTSC
T ss_pred ch--hhhCCCccEEECcCCCCCC
Confidence 33 5788999999999999875
No 84
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.86 E-value=2.9e-20 Score=159.42 Aligned_cols=192 Identities=20% Similarity=0.208 Sum_probs=109.7
Q ss_pred hhcCCCccEEeccCCcccccCChhhhhcCCCcccEEEcCCCcCCCCCC-CCCCCCcEEEccCCCCCccC-CCCCCCccEE
Q 040206 19 LRTQHQLEWLDLSKNQIRGRIPSWMWDIGVHTLQFLILSQNVLTSIDH-LPWKNLQYLTLDSNLLQGSL-PDLPPHMVQL 96 (347)
Q Consensus 19 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~-~~~~~L~~L~l~~~~~~~~~-~~~~~~L~~L 96 (347)
..++++|+.|++++|.+. .++ .+. .+++|+.|++++|.++.++. ..+++|++|++++|.+.... ...+++|++|
T Consensus 37 ~~~l~~L~~L~l~~~~i~-~l~-~~~--~l~~L~~L~L~~n~i~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L 112 (308)
T 1h6u_A 37 QADLDGITTLSAFGTGVT-TIE-GVQ--YLNNLIGLELKDNQITDLAPLKNLTKITELELSGNPLKNVSAIAGLQSIKTL 112 (308)
T ss_dssp HHHHHTCCEEECTTSCCC-CCT-TGG--GCTTCCEEECCSSCCCCCGGGTTCCSCCEEECCSCCCSCCGGGTTCTTCCEE
T ss_pred HHHcCCcCEEEeeCCCcc-Cch-hhh--ccCCCCEEEccCCcCCCChhHccCCCCCEEEccCCcCCCchhhcCCCCCCEE
Confidence 566788888888888887 454 344 34888888888888887765 56677888888777766432 1113555666
Q ss_pred EcccCcccccCCccccCCCCccEEEcccCcccccCCcccCCccccEEECCCCccccccCccCCCCCCccEEEccCCcccC
Q 040206 97 LISNNSLTGEIPSSFCNLSSIQYLNLSNNSLSGQIPQCLGNSTLETLDLGMNNFQGSIPQTNAKGCNLTSLRLSGNHLEG 176 (347)
Q Consensus 97 ~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 176 (347)
++++|.+... + .+..+++|+.|++++|.+....+ ...+++|+.|++++|.+.... . +..+++|+.|++++|.++.
T Consensus 113 ~l~~n~l~~~-~-~l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~-~-l~~l~~L~~L~l~~n~l~~ 187 (308)
T 1h6u_A 113 DLTSTQITDV-T-PLAGLSNLQVLYLDLNQITNISP-LAGLTNLQYLSIGNAQVSDLT-P-LANLSKLTTLKADDNKISD 187 (308)
T ss_dssp ECTTSCCCCC-G-GGTTCTTCCEEECCSSCCCCCGG-GGGCTTCCEEECCSSCCCCCG-G-GTTCTTCCEEECCSSCCCC
T ss_pred ECCCCCCCCc-h-hhcCCCCCCEEECCCCccCcCcc-ccCCCCccEEEccCCcCCCCh-h-hcCCCCCCEEECCCCccCc
Confidence 6666655532 1 25556666666666665553322 333445555555555554221 1 4455555555555555542
Q ss_pred CCccccccCCCCcEEEccCCcccCCCCccccCCCCCCeEEecCCccc
Q 040206 177 PLPPSLINCVNLQFLDVGNNNLSGPIPECLGNSTRLSFLDVGNNSLS 223 (347)
Q Consensus 177 ~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~~~~~ 223 (347)
.. .+..+++|++|++++|.+.+.. .+..+++|+.|++++|.++
T Consensus 188 ~~--~l~~l~~L~~L~L~~N~l~~~~--~l~~l~~L~~L~l~~N~i~ 230 (308)
T 1h6u_A 188 IS--PLASLPNLIEVHLKNNQISDVS--PLANTSNLFIVTLTNQTIT 230 (308)
T ss_dssp CG--GGGGCTTCCEEECTTSCCCBCG--GGTTCTTCCEEEEEEEEEE
T ss_pred Ch--hhcCCCCCCEEEccCCccCccc--cccCCCCCCEEEccCCeee
Confidence 21 1445555555555555554322 2445555555555555544
No 85
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.85 E-value=1.3e-22 Score=178.24 Aligned_cols=255 Identities=22% Similarity=0.186 Sum_probs=186.3
Q ss_pred EEeccCCcccccCChhhhhcCCCcccEEEcCCCcCCCCCC-------CCCC-CCcEEEccCCCCCccCCCCCCCccEEEc
Q 040206 27 WLDLSKNQIRGRIPSWMWDIGVHTLQFLILSQNVLTSIDH-------LPWK-NLQYLTLDSNLLQGSLPDLPPHMVQLLI 98 (347)
Q Consensus 27 ~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~-------~~~~-~L~~L~l~~~~~~~~~~~~~~~L~~L~l 98 (347)
.++++.+.+++.+|..+... ++|++|++++|.+++.+. ..++ +|++|++++|.++.....
T Consensus 2 ~~~ls~n~~~~~~~~~~~~~--~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~---------- 69 (362)
T 3goz_A 2 NYKLTLHPGSNPVEEFTSIP--HGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSD---------- 69 (362)
T ss_dssp EEECCCCTTCCHHHHHHTSC--TTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHH----------
T ss_pred ccccccccchHHHHHHHhCC--CCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHH----------
Confidence 46788999987777666443 569999999999988875 3456 899999999988743221
Q ss_pred ccCcccccCCccccCC-CCccEEEcccCcccccCCccc-----CC-ccccEEECCCCccccccCcc----CCC-CCCccE
Q 040206 99 SNNSLTGEIPSSFCNL-SSIQYLNLSNNSLSGQIPQCL-----GN-STLETLDLGMNNFQGSIPQT----NAK-GCNLTS 166 (347)
Q Consensus 99 ~~~~~~~~~~~~~~~l-~~L~~L~l~~~~~~~~~~~~~-----~~-~~L~~L~l~~~~~~~~~~~~----~~~-~~~L~~ 166 (347)
.....+... ++|++|++++|.+....+..+ .. ++|++|++++|.+....+.. +.. .++|++
T Consensus 70 -------~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~ 142 (362)
T 3goz_A 70 -------ELVQILAAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITS 142 (362)
T ss_dssp -------HHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCE
T ss_pred -------HHHHHHhccCCCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeE
Confidence 111122233 899999999999886554422 33 68999999999987544433 333 369999
Q ss_pred EEccCCcccCCCccc----cccCC-CCcEEEccCCcccCCCCc----cccCC-CCCCeEEecCCccccCcCcccc-----
Q 040206 167 LRLSGNHLEGPLPPS----LINCV-NLQFLDVGNNNLSGPIPE----CLGNS-TRLSFLDVGNNSLSGPIPECLA----- 231 (347)
Q Consensus 167 L~l~~~~~~~~~~~~----l~~~~-~L~~L~l~~n~~~~~~~~----~l~~~-~~L~~L~l~~~~~~~~~~~~~~----- 231 (347)
|++++|.++...+.. +...+ +|++|++++|.+.+..+. .+..+ ++|+.|++++|.+.+.....+.
T Consensus 143 L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~ 222 (362)
T 3goz_A 143 LNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSS 222 (362)
T ss_dssp EECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHH
T ss_pred EEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhc
Confidence 999999998654433 34454 999999999999865554 34455 5999999999999874433222
Q ss_pred -ccCCcEEEcccCcccccCChhhhccccccCCCcCccCCCCCcEEEccCCccCCccch-------hhhhccCCCEEEccc
Q 040206 232 -NSTLEILDMRMNKFSGSLPQNICKKLCFGPLPPSLVNCQYLEVLDVGNNQIDDTFLY-------WLDVLLQLQVLILRS 303 (347)
Q Consensus 232 -~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~i~~~~~~-------~~~~l~~L~~l~L~~ 303 (347)
.++|+.|++++|.+.+..+..+ ...+..+++|++|++++|.+.+.... .+..+++|+.||+++
T Consensus 223 ~~~~L~~L~Ls~N~l~~~~~~~l---------~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~ 293 (362)
T 3goz_A 223 IPNHVVSLNLCLNCLHGPSLENL---------KLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNG 293 (362)
T ss_dssp SCTTCCEEECCSSCCCCCCHHHH---------HHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTS
T ss_pred CCCCceEEECcCCCCCcHHHHHH---------HHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCC
Confidence 2589999999999997655532 23567788999999999996543332 345677899999999
Q ss_pred ceeecc
Q 040206 304 NRFWGP 309 (347)
Q Consensus 304 n~~~~~ 309 (347)
|++.+.
T Consensus 294 N~l~~~ 299 (362)
T 3goz_A 294 KEIHPS 299 (362)
T ss_dssp CBCCGG
T ss_pred CcCCCc
Confidence 999876
No 86
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.84 E-value=1.6e-19 Score=150.24 Aligned_cols=149 Identities=20% Similarity=0.227 Sum_probs=63.7
Q ss_pred cEEEccCCCCCccCCCCCCCccEEEcccCcccccCCccccCCCCccEEEcccCcccccCCccc-CCccccEEECCCCccc
Q 040206 73 QYLTLDSNLLQGSLPDLPPHMVQLLISNNSLTGEIPSSFCNLSSIQYLNLSNNSLSGQIPQCL-GNSTLETLDLGMNNFQ 151 (347)
Q Consensus 73 ~~L~l~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~-~~~~L~~L~l~~~~~~ 151 (347)
++++++++.+...+...+++++.|++++|.+....+..+..+++|++|++++|.+....+..+ .+++|++|++++|.+.
T Consensus 17 ~~l~~~~~~l~~~p~~~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~ 96 (251)
T 3m19_A 17 KEVDCQGKSLDSVPSGIPADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLA 96 (251)
T ss_dssp TEEECTTCCCSSCCSCCCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCC
T ss_pred eEEecCCCCccccCCCCCCCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCCccc
Confidence 344444444443333333444555555555544444455555666666665555554333322 2334444444444443
Q ss_pred cccCccCCCCCCccEEEccCCcccCCCccccccCCCCcEEEccCCcccCCCCccccCCCCCCeEEecCCc
Q 040206 152 GSIPQTNAKGCNLTSLRLSGNHLEGPLPPSLINCVNLQFLDVGNNNLSGPIPECLGNSTRLSFLDVGNNS 221 (347)
Q Consensus 152 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~~~ 221 (347)
...+..+..+++|++|++++|.++...+..+..+++|+.|++++|.+.+..+..+..+++|+.|++++|.
T Consensus 97 ~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~ 166 (251)
T 3m19_A 97 SLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQ 166 (251)
T ss_dssp CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred ccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCc
Confidence 3333333344444444444444433322233334444444444444433322233333333333333333
No 87
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.84 E-value=4.5e-20 Score=152.51 Aligned_cols=148 Identities=20% Similarity=0.194 Sum_probs=76.1
Q ss_pred CCccEEEccc-CcccccCCccccCCCCccEEEcccCcccccCCcccCCcccc---EEECCCC-ccccccCccCCCCCCcc
Q 040206 91 PHMVQLLISN-NSLTGEIPSSFCNLSSIQYLNLSNNSLSGQIPQCLGNSTLE---TLDLGMN-NFQGSIPQTNAKGCNLT 165 (347)
Q Consensus 91 ~~L~~L~l~~-~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~---~L~l~~~-~~~~~~~~~~~~~~~L~ 165 (347)
++|++|++++ |.++...+..|.++++|++|++++|.+...+ .+...++|+ .|++++| .+....+..+..+++|+
T Consensus 80 ~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~l~~n~l~~lp-~~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~ 158 (239)
T 2xwt_C 80 SKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLKMFP-DLTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNET 158 (239)
T ss_dssp TTCCEEEEEEETTCCEECTTSEECCTTCCEEEEEEECCCSCC-CCTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSE
T ss_pred cCCcEEECCCCCCeeEcCHHHhCCCCCCCEEeCCCCCCcccc-ccccccccccccEEECCCCcchhhcCcccccchhcce
Confidence 4455555554 5555444455666666666666666665432 233344444 6666666 55544444455566666
Q ss_pred -EEEccCCcccCCCccccccCCCCcEEEccCCc-ccCCCCccccCC-CCCCeEEecCCccccCcCccccccCCcEEEccc
Q 040206 166 -SLRLSGNHLEGPLPPSLINCVNLQFLDVGNNN-LSGPIPECLGNS-TRLSFLDVGNNSLSGPIPECLANSTLEILDMRM 242 (347)
Q Consensus 166 -~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~-~~~~~~~~l~~~-~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~L~~ 242 (347)
++++++|.++...+..+.. ++|+.|++++|. +.+..+..+..+ ++|+.|++++|.++..... ..++|+.|++++
T Consensus 159 ~~L~l~~n~l~~i~~~~~~~-~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~l~~~--~~~~L~~L~l~~ 235 (239)
T 2xwt_C 159 LTLKLYNNGFTSVQGYAFNG-TKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSK--GLEHLKELIARN 235 (239)
T ss_dssp EEEECCSCCCCEECTTTTTT-CEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCCCCCCT--TCTTCSEEECTT
T ss_pred eEEEcCCCCCcccCHhhcCC-CCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCccccCChh--HhccCceeeccC
Confidence 6666666555322223333 556666666663 554444455555 5555555555555432222 223444444443
No 88
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.84 E-value=5e-22 Score=172.84 Aligned_cols=231 Identities=17% Similarity=0.165 Sum_probs=151.0
Q ss_pred CCCcEEEccCCCCCccCCCC--CCCccEEEcccCccccc-CCccccCCCCccEEEcccCcccccCCcc-cCCccccEEEC
Q 040206 70 KNLQYLTLDSNLLQGSLPDL--PPHMVQLLISNNSLTGE-IPSSFCNLSSIQYLNLSNNSLSGQIPQC-LGNSTLETLDL 145 (347)
Q Consensus 70 ~~L~~L~l~~~~~~~~~~~~--~~~L~~L~l~~~~~~~~-~~~~~~~l~~L~~L~l~~~~~~~~~~~~-~~~~~L~~L~l 145 (347)
++++.|+++++.+.+..... +++|++|++++|.+... .+..+..+++|++|++++|.+....+.. ..+++|++|++
T Consensus 70 ~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L 149 (336)
T 2ast_B 70 QGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNL 149 (336)
T ss_dssp TTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEEC
T ss_pred ccceEEEcCCccccccchhhccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEEC
Confidence 44555555555544333322 25666666666665533 5556677777888887777665433322 24567888888
Q ss_pred CCC-cccc-ccCccCCCCCCccEEEccCC-cccCC-CccccccCC-CCcEEEccCCc--cc-CCCCccccCCCCCCeEEe
Q 040206 146 GMN-NFQG-SIPQTNAKGCNLTSLRLSGN-HLEGP-LPPSLINCV-NLQFLDVGNNN--LS-GPIPECLGNSTRLSFLDV 217 (347)
Q Consensus 146 ~~~-~~~~-~~~~~~~~~~~L~~L~l~~~-~~~~~-~~~~l~~~~-~L~~L~l~~n~--~~-~~~~~~l~~~~~L~~L~l 217 (347)
++| .+.. ..+..+..+++|++|++++| .++.. .+..+..++ +|++|++++|. +. +..+..+..+++|+.|++
T Consensus 150 ~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l 229 (336)
T 2ast_B 150 SGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDL 229 (336)
T ss_dssp TTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEEC
T ss_pred CCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeC
Confidence 877 4443 24445666788888888888 77632 345577788 89999999884 43 344566778889999999
Q ss_pred cCCc-cccCcCccc-cccCCcEEEcccCc-ccccCChhhhccccccCCCcCccCCCCCcEEEccCCccCCccchhhhhcc
Q 040206 218 GNNS-LSGPIPECL-ANSTLEILDMRMNK-FSGSLPQNICKKLCFGPLPPSLVNCQYLEVLDVGNNQIDDTFLYWLDVLL 294 (347)
Q Consensus 218 ~~~~-~~~~~~~~~-~~~~L~~L~L~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~ 294 (347)
++|. +++.....+ ..++|+.|++++|. +... ....+..+++|++|++++| +++.....+. .
T Consensus 230 ~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~-------------~~~~l~~~~~L~~L~l~~~-i~~~~~~~l~--~ 293 (336)
T 2ast_B 230 SDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPE-------------TLLELGEIPTLKTLQVFGI-VPDGTLQLLK--E 293 (336)
T ss_dssp TTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGG-------------GGGGGGGCTTCCEEECTTS-SCTTCHHHHH--H
T ss_pred CCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHH-------------HHHHHhcCCCCCEEeccCc-cCHHHHHHHH--h
Confidence 9988 554444333 34889999999985 3321 1124677999999999999 5543333332 2
Q ss_pred CCCEEEcccceeecccCCcccc
Q 040206 295 QLQVLILRSNRFWGPIGKLRSR 316 (347)
Q Consensus 295 ~L~~l~L~~n~~~~~~~~~~~~ 316 (347)
.+..|++++|.+++..|.....
T Consensus 294 ~l~~L~l~~n~l~~~~~~~~~~ 315 (336)
T 2ast_B 294 ALPHLQINCSHFTTIARPTIGN 315 (336)
T ss_dssp HSTTSEESCCCSCCTTCSSCSS
T ss_pred hCcceEEecccCccccCCcccc
Confidence 4666678999999988876554
No 89
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.83 E-value=6.9e-22 Score=171.97 Aligned_cols=216 Identities=19% Similarity=0.174 Sum_probs=114.6
Q ss_pred ccEEeccCCcccccCChhhhhcCCCcccEEEcCCCcCCCCCC--CCCCCCcEEEccCCCCCcc----CCCCCCCccEEEc
Q 040206 25 LEWLDLSKNQIRGRIPSWMWDIGVHTLQFLILSQNVLTSIDH--LPWKNLQYLTLDSNLLQGS----LPDLPPHMVQLLI 98 (347)
Q Consensus 25 L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~--~~~~~L~~L~l~~~~~~~~----~~~~~~~L~~L~l 98 (347)
++.++++++.+.. ..+.....+.++.++++++.++.... ..+++|++|++++|.+... ....+++|++|++
T Consensus 49 ~~~l~l~~~~~~~---~~~~~~~~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L 125 (336)
T 2ast_B 49 WQTLDLTGKNLHP---DVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSL 125 (336)
T ss_dssp SSEEECTTCBCCH---HHHHHHHHTTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEEC
T ss_pred heeeccccccCCH---HHHHhhhhccceEEEcCCccccccchhhccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeC
Confidence 5555555555442 11111111455566666555554433 3445566666666654421 1223356666666
Q ss_pred ccCcccccCCccccCCCCccEEEcccC-ccccc-CCc-ccCCccccEEECCCC-ccccc-cCccCCCCC-CccEEEccCC
Q 040206 99 SNNSLTGEIPSSFCNLSSIQYLNLSNN-SLSGQ-IPQ-CLGNSTLETLDLGMN-NFQGS-IPQTNAKGC-NLTSLRLSGN 172 (347)
Q Consensus 99 ~~~~~~~~~~~~~~~l~~L~~L~l~~~-~~~~~-~~~-~~~~~~L~~L~l~~~-~~~~~-~~~~~~~~~-~L~~L~l~~~ 172 (347)
++|.+.+..+..+..+++|++|++++| .++.. .+. ...+++|++|++++| .+... .+..+..++ +|++|++++|
T Consensus 126 ~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~ 205 (336)
T 2ast_B 126 EGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGY 205 (336)
T ss_dssp TTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSC
T ss_pred cCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCC
Confidence 666655445555666666666666666 34421 111 224456666666666 55432 344455556 6777777666
Q ss_pred c--cc-CCCccccccCCCCcEEEccCCc-ccCCCCccccCCCCCCeEEecCCc-cccCcC-ccccccCCcEEEcccC
Q 040206 173 H--LE-GPLPPSLINCVNLQFLDVGNNN-LSGPIPECLGNSTRLSFLDVGNNS-LSGPIP-ECLANSTLEILDMRMN 243 (347)
Q Consensus 173 ~--~~-~~~~~~l~~~~~L~~L~l~~n~-~~~~~~~~l~~~~~L~~L~l~~~~-~~~~~~-~~~~~~~L~~L~L~~~ 243 (347)
. ++ ...+..+..+++|+.|++++|. +.+..+..+..+++|+.|++++|. +..... .....++|+.|++++|
T Consensus 206 ~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~ 282 (336)
T 2ast_B 206 RKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI 282 (336)
T ss_dssp GGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS
T ss_pred cccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc
Confidence 3 32 1233445566777777777776 444445566666777777777663 222211 1222366777777766
No 90
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.83 E-value=1.4e-20 Score=161.64 Aligned_cols=222 Identities=20% Similarity=0.207 Sum_probs=168.7
Q ss_pred cCCCccEEeccCCcccccCChhhh-hcCCCcccEEEcCCCcCCCCCC-----CCCCCCcEEEccCCCCCccCC-------
Q 040206 21 TQHQLEWLDLSKNQIRGRIPSWMW-DIGVHTLQFLILSQNVLTSIDH-----LPWKNLQYLTLDSNLLQGSLP------- 87 (347)
Q Consensus 21 ~~~~L~~L~l~~~~~~~~~~~~~~-~~~~~~L~~L~l~~~~l~~~~~-----~~~~~L~~L~l~~~~~~~~~~------- 87 (347)
+...++.+.+.++.++......+. ...+++|++|++++|.++.... ..+++|++|++++|.+....+
T Consensus 62 ~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~ 141 (310)
T 4glp_A 62 KALRVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQ 141 (310)
T ss_dssp SSCCCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHT
T ss_pred hhcceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHh
Confidence 345578888888877633222111 1133779999999998876554 346889999999999886333
Q ss_pred CCCCCccEEEcccCcccccCCccccCCCCccEEEcccCcccc---cCCcc--cCCccccEEECCCCccccccCc----cC
Q 040206 88 DLPPHMVQLLISNNSLTGEIPSSFCNLSSIQYLNLSNNSLSG---QIPQC--LGNSTLETLDLGMNNFQGSIPQ----TN 158 (347)
Q Consensus 88 ~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~---~~~~~--~~~~~L~~L~l~~~~~~~~~~~----~~ 158 (347)
..+++|++|++++|.+....+..+..+++|++|++++|.+.. ..... ..+++|++|++++|.+. ..+. .+
T Consensus 142 ~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~l~~~~~~l~ 220 (310)
T 4glp_A 142 WLKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGME-TPTGVCAALA 220 (310)
T ss_dssp TBCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCC-CHHHHHHHHH
T ss_pred hhccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCC-chHHHHHHHH
Confidence 235899999999999988888889999999999999998653 22222 25678999999999886 2232 24
Q ss_pred CCCCCccEEEccCCcccCCCccccccC---CCCcEEEccCCcccCCCCccccCCCCCCeEEecCCccccCcCccccccCC
Q 040206 159 AKGCNLTSLRLSGNHLEGPLPPSLINC---VNLQFLDVGNNNLSGPIPECLGNSTRLSFLDVGNNSLSGPIPECLANSTL 235 (347)
Q Consensus 159 ~~~~~L~~L~l~~~~~~~~~~~~l~~~---~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~L 235 (347)
..+++|++|++++|.++...|..+..+ ++|++|++++|.+. .+|..+. ++|+.|++++|.+++. +.....++|
T Consensus 221 ~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~~~-~~~~~l~~L 296 (310)
T 4glp_A 221 AAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLE-QVPKGLP--AKLRVLDLSSNRLNRA-PQPDELPEV 296 (310)
T ss_dssp HHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCC-SCCSCCC--SCCSCEECCSCCCCSC-CCTTSCCCC
T ss_pred hcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCC-chhhhhc--CCCCEEECCCCcCCCC-chhhhCCCc
Confidence 667899999999999987767677666 69999999999998 5566654 7999999999999864 333444899
Q ss_pred cEEEcccCcccc
Q 040206 236 EILDMRMNKFSG 247 (347)
Q Consensus 236 ~~L~L~~~~~~~ 247 (347)
+.|++++|.+++
T Consensus 297 ~~L~L~~N~l~~ 308 (310)
T 4glp_A 297 DNLTLDGNPFLV 308 (310)
T ss_dssp SCEECSSTTTSC
T ss_pred cEEECcCCCCCC
Confidence 999999999885
No 91
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.83 E-value=6.7e-22 Score=185.11 Aligned_cols=42 Identities=17% Similarity=0.088 Sum_probs=31.8
Q ss_pred CCCCCcEEEccCCccCCc-cchhhhhccCCCEEEcccceeecc
Q 040206 268 NCQYLEVLDVGNNQIDDT-FLYWLDVLLQLQVLILRSNRFWGP 309 (347)
Q Consensus 268 ~~~~L~~L~L~~n~i~~~-~~~~~~~l~~L~~l~L~~n~~~~~ 309 (347)
.+++|++|++++|.+++. .+..+..+++|+.|++++|++++.
T Consensus 461 ~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~ 503 (592)
T 3ogk_B 461 YSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSER 503 (592)
T ss_dssp SCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHH
T ss_pred hCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHH
Confidence 477888888888887753 344556788999999999987654
No 92
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.81 E-value=2e-21 Score=181.92 Aligned_cols=296 Identities=15% Similarity=0.112 Sum_probs=157.1
Q ss_pred CceEEEecCCCCC-CCChhhh-cCCCccEEeccCC-cccccCChhhhhcCCCcccEEEcCCCcCCCCCC-------CCCC
Q 040206 1 KTIKTQVKTCNIS-EFPDILR-TQHQLEWLDLSKN-QIRGRIPSWMWDIGVHTLQFLILSQNVLTSIDH-------LPWK 70 (347)
Q Consensus 1 ~l~~l~l~~~~~~-~~~~~~~-~~~~L~~L~l~~~-~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~-------~~~~ 70 (347)
+|++|++++|.+. ..+..+. .+++|++|++++| .+.+.....+.. .+++|++|++++|.+++... ..++
T Consensus 106 ~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~-~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~ 184 (594)
T 2p1m_B 106 WLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAA-TCRNLKELDLRESDVDDVSGHWLSHFPDTYT 184 (594)
T ss_dssp TCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHH-HCTTCCEEECTTCEEECCCGGGGGGSCTTCC
T ss_pred CCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHH-hCCCCCEEeCcCCccCCcchHHHHHHhhcCC
Confidence 3677888887766 3334443 6778888888877 454333333333 44778888888776555332 2455
Q ss_pred CCcEEEccCCC--CCcc----CCCCCCCccEEEcccCc------------------------------------------
Q 040206 71 NLQYLTLDSNL--LQGS----LPDLPPHMVQLLISNNS------------------------------------------ 102 (347)
Q Consensus 71 ~L~~L~l~~~~--~~~~----~~~~~~~L~~L~l~~~~------------------------------------------ 102 (347)
+|++|++++|. +... ....+++|++|++++|.
T Consensus 185 ~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~l~~~ 264 (594)
T 2p1m_B 185 SLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGC 264 (594)
T ss_dssp CCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSBCCCCCCHHHHHHHHHHHHTC
T ss_pred cCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHHHhcCCcceEcccccccCccchhhHHHHHHHHhcC
Confidence 77777777665 2110 00112556666665541
Q ss_pred --------ccc----cCCccccCCCCccEEEcccCcccccCCc--ccCCccccEEECCCCccccccCccCCCCCCccEEE
Q 040206 103 --------LTG----EIPSSFCNLSSIQYLNLSNNSLSGQIPQ--CLGNSTLETLDLGMNNFQGSIPQTNAKGCNLTSLR 168 (347)
Q Consensus 103 --------~~~----~~~~~~~~l~~L~~L~l~~~~~~~~~~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ 168 (347)
+.. ..+..+..+++|++|++++|.+...... ...+++|++|++++|......+.....+++|++|+
T Consensus 265 ~~L~~Ls~~~~~~~~~l~~~~~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~~~~l~~l~~~~~~L~~L~ 344 (594)
T 2p1m_B 265 KELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDYIEDAGLEVLASTCKDLRELR 344 (594)
T ss_dssp TTCCEEECCBTCCGGGGGGGHHHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEEE
T ss_pred CCcccccCCcccchhhHHHHHHhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCccCHHHHHHHHHhCCCCCEEE
Confidence 000 0111112356777777777765422111 11345666666666511111111111234455554
Q ss_pred c----------------------------------cCCcccCCCccccc-cCCCCcEEEcc--C----CcccCC-----C
Q 040206 169 L----------------------------------SGNHLEGPLPPSLI-NCVNLQFLDVG--N----NNLSGP-----I 202 (347)
Q Consensus 169 l----------------------------------~~~~~~~~~~~~l~-~~~~L~~L~l~--~----n~~~~~-----~ 202 (347)
+ ..+.++......+. .+++|+.|+++ + +.+.+. .
T Consensus 345 L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~ 424 (594)
T 2p1m_B 345 VFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGF 424 (594)
T ss_dssp EECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHH
T ss_pred EecCcccccccCCCCCHHHHHHHHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHH
Confidence 4 33333322222222 35666666666 2 223211 1
Q ss_pred CccccCCCCCCeEEecCCccccCcCcccc--ccCCcEEEcccCcccccCChhhhccccccCCCcCccCCCCCcEEEccCC
Q 040206 203 PECLGNSTRLSFLDVGNNSLSGPIPECLA--NSTLEILDMRMNKFSGSLPQNICKKLCFGPLPPSLVNCQYLEVLDVGNN 280 (347)
Q Consensus 203 ~~~l~~~~~L~~L~l~~~~~~~~~~~~~~--~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n 280 (347)
+..+..+++|+.|++++ .+++.....+. .++|+.|++++|.+++..+.. ....+++|++|++++|
T Consensus 425 ~~l~~~~~~L~~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~------------l~~~~~~L~~L~L~~n 491 (594)
T 2p1m_B 425 GAIVEHCKDLRRLSLSG-LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHH------------VLSGCDSLRKLEIRDC 491 (594)
T ss_dssp HHHHHHCTTCCEEECCS-SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHH------------HHHHCTTCCEEEEESC
T ss_pred HHHHhhCCCccEEeecC-cccHHHHHHHHHhchhccEeeccCCCCcHHHHHH------------HHhcCCCcCEEECcCC
Confidence 11244556666666655 33332222222 367888888887776543221 1356889999999999
Q ss_pred ccCCccch-hhhhccCCCEEEcccceeeccc
Q 040206 281 QIDDTFLY-WLDVLLQLQVLILRSNRFWGPI 310 (347)
Q Consensus 281 ~i~~~~~~-~~~~l~~L~~l~L~~n~~~~~~ 310 (347)
.+++.... .+..+++|+.|++++|+++...
T Consensus 492 ~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~ 522 (594)
T 2p1m_B 492 PFGDKALLANASKLETMRSLWMSSCSVSFGA 522 (594)
T ss_dssp SCCHHHHHHTGGGGGGSSEEEEESSCCBHHH
T ss_pred CCcHHHHHHHHHhCCCCCEEeeeCCCCCHHH
Confidence 98654443 4456899999999999986543
No 93
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.80 E-value=6e-21 Score=169.18 Aligned_cols=232 Identities=18% Similarity=0.209 Sum_probs=139.9
Q ss_pred CceEEEecCCCCCC-----CChhhhcCCCccEEeccCCc---ccccCChhhhh-----cCCCcccEEEcCCCcCCCCCC-
Q 040206 1 KTIKTQVKTCNISE-----FPDILRTQHQLEWLDLSKNQ---IRGRIPSWMWD-----IGVHTLQFLILSQNVLTSIDH- 66 (347)
Q Consensus 1 ~l~~l~l~~~~~~~-----~~~~~~~~~~L~~L~l~~~~---~~~~~~~~~~~-----~~~~~L~~L~l~~~~l~~~~~- 66 (347)
.+++|+|++|.+.. ++.++.++++|++|++++|. +.+.+|..+.. ..+++|++|++++|.++....
T Consensus 33 ~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~ 112 (386)
T 2ca6_A 33 SVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQE 112 (386)
T ss_dssp CCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTTHH
T ss_pred CccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCCHHHHH
Confidence 47899999998882 44557799999999999974 44455555421 145888899998888876322
Q ss_pred ------CCCCCCcEEEccCCCCCccCCCCCCCccEEEcccCcccccCCccccCC---------CCccEEEcccCcccc-c
Q 040206 67 ------LPWKNLQYLTLDSNLLQGSLPDLPPHMVQLLISNNSLTGEIPSSFCNL---------SSIQYLNLSNNSLSG-Q 130 (347)
Q Consensus 67 ------~~~~~L~~L~l~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l---------~~L~~L~l~~~~~~~-~ 130 (347)
..+++|++|++++|.++...... ++..+..+ ++|++|++++|.+.. .
T Consensus 113 ~l~~~l~~~~~L~~L~L~~n~l~~~~~~~-----------------l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~ 175 (386)
T 2ca6_A 113 PLIDFLSKHTPLEHLYLHNNGLGPQAGAK-----------------IARALQELAVNKKAKNAPPLRSIICGRNRLENGS 175 (386)
T ss_dssp HHHHHHHHCTTCCEEECCSSCCHHHHHHH-----------------HHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGG
T ss_pred HHHHHHHhCCCCCEEECcCCCCCHHHHHH-----------------HHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHH
Confidence 34577777777777765221110 11111112 455555555554431 1
Q ss_pred CC----cccCCccccEEECCCCcccc-----ccCccCCCCCCccEEEccCCccc----CCCccccccCCCCcEEEccCCc
Q 040206 131 IP----QCLGNSTLETLDLGMNNFQG-----SIPQTNAKGCNLTSLRLSGNHLE----GPLPPSLINCVNLQFLDVGNNN 197 (347)
Q Consensus 131 ~~----~~~~~~~L~~L~l~~~~~~~-----~~~~~~~~~~~L~~L~l~~~~~~----~~~~~~l~~~~~L~~L~l~~n~ 197 (347)
.+ ....+++|++|++++|.+.. ..+..+..+++|++|++++|.++ ...+..+..+++|+.|++++|.
T Consensus 176 ~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~ 255 (386)
T 2ca6_A 176 MKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCL 255 (386)
T ss_dssp HHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCC
T ss_pred HHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCC
Confidence 11 11123455556665555431 22225556667777777777664 2445566677777777777777
Q ss_pred ccCC----CCcccc--CCCCCCeEEecCCcccc----CcCccc-c-ccCCcEEEcccCcccccC
Q 040206 198 LSGP----IPECLG--NSTRLSFLDVGNNSLSG----PIPECL-A-NSTLEILDMRMNKFSGSL 249 (347)
Q Consensus 198 ~~~~----~~~~l~--~~~~L~~L~l~~~~~~~----~~~~~~-~-~~~L~~L~L~~~~~~~~~ 249 (347)
+.+. ++..+. .+++|+.|++++|.++. ..+..+ . .++|+.|++++|.+++..
T Consensus 256 i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~ 319 (386)
T 2ca6_A 256 LSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEED 319 (386)
T ss_dssp CCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTS
T ss_pred CchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcch
Confidence 7643 334443 37778888888777775 233333 2 377888888888877654
No 94
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.79 E-value=1.9e-18 Score=139.58 Aligned_cols=172 Identities=21% Similarity=0.184 Sum_probs=116.7
Q ss_pred EEEccCCCCCccCCCCCCCccEEEcccCcccccCCccccCCCCccEEEcccCcccccCCccc-CCccccEEECCCCcccc
Q 040206 74 YLTLDSNLLQGSLPDLPPHMVQLLISNNSLTGEIPSSFCNLSSIQYLNLSNNSLSGQIPQCL-GNSTLETLDLGMNNFQG 152 (347)
Q Consensus 74 ~L~l~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~ 152 (347)
.++.+++.+...+...++++++|++++|.+....+..+..+++|++|++++|.+....+..+ .+++|++|++++|.+..
T Consensus 11 ~v~c~~~~l~~~p~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~ 90 (208)
T 2o6s_A 11 TVECYSQGRTSVPTGIPAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQS 90 (208)
T ss_dssp EEECCSSCCSSCCSCCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC
T ss_pred EEEecCCCccCCCCCCCCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCc
Confidence 44455555554444445566666666666665555566777888888888887776555443 45677777777777765
Q ss_pred ccCccCCCCCCccEEEccCCcccCCCccccccCCCCcEEEccCCcccCCCCccccCCCCCCeEEecCCccccCcCccccc
Q 040206 153 SIPQTNAKGCNLTSLRLSGNHLEGPLPPSLINCVNLQFLDVGNNNLSGPIPECLGNSTRLSFLDVGNNSLSGPIPECLAN 232 (347)
Q Consensus 153 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~ 232 (347)
..+..+..+++|++|++++|.++...+..+..+++|+.|++++|.+.+..+..+..+++|+.|++++|.+... .
T Consensus 91 ~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~------~ 164 (208)
T 2o6s_A 91 LPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCT------C 164 (208)
T ss_dssp CCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCCC------T
T ss_pred cCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCeecC------C
Confidence 5555567777888888888877755555567778888888888877766555677778888888887765532 2
Q ss_pred cCCcEEEcccCcccccCCh
Q 040206 233 STLEILDMRMNKFSGSLPQ 251 (347)
Q Consensus 233 ~~L~~L~L~~~~~~~~~~~ 251 (347)
+.|+.|+++.|.+++.+|.
T Consensus 165 ~~l~~L~~~~n~~~g~ip~ 183 (208)
T 2o6s_A 165 PGIRYLSEWINKHSGVVRN 183 (208)
T ss_dssp TTTHHHHHHHHHCTTTBBC
T ss_pred CCHHHHHHHHHhCCceeec
Confidence 4667777777777766554
No 95
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.79 E-value=2.5e-21 Score=181.36 Aligned_cols=321 Identities=15% Similarity=0.073 Sum_probs=178.6
Q ss_pred CceEEEecCCCCC----CC------------ChhhhcCCCccEEeccCCcccccCChhhhhcCCCcccEEEcCCC-cCCC
Q 040206 1 KTIKTQVKTCNIS----EF------------PDILRTQHQLEWLDLSKNQIRGRIPSWMWDIGVHTLQFLILSQN-VLTS 63 (347)
Q Consensus 1 ~l~~l~l~~~~~~----~~------------~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~-~l~~ 63 (347)
+++++++++|... .. +.....+++|+.|++++|.+++..+..+.. .+++|++|++++| .++.
T Consensus 67 ~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~l~~-~~~~L~~L~L~~~~~~~~ 145 (594)
T 2p1m_B 67 KVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLELIAK-SFKNFKVLVLSSCEGFST 145 (594)
T ss_dssp TCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHH-HCTTCCEEEEESCEEEEH
T ss_pred CceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCCCCeEEeeCcEEcHHHHHHHHH-hCCCCcEEeCCCcCCCCH
Confidence 4788999987522 11 234568999999999999998777777764 4699999999998 5544
Q ss_pred C--CC--CCCCCCcEEEccCCCCCcc-------CCCCCCCccEEEcccCc--ccc-cCCccccCCCCccEEEcccCc-cc
Q 040206 64 I--DH--LPWKNLQYLTLDSNLLQGS-------LPDLPPHMVQLLISNNS--LTG-EIPSSFCNLSSIQYLNLSNNS-LS 128 (347)
Q Consensus 64 ~--~~--~~~~~L~~L~l~~~~~~~~-------~~~~~~~L~~L~l~~~~--~~~-~~~~~~~~l~~L~~L~l~~~~-~~ 128 (347)
. .. ..+++|++|++++|.++.. ....+++|++|+++++. +.. .....+..+++|+.|++.+|. +.
T Consensus 146 ~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~ 225 (594)
T 2p1m_B 146 DGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLE 225 (594)
T ss_dssp HHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHH
T ss_pred HHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHH
Confidence 2 22 3679999999999986542 22345799999999986 221 111223446888888888762 11
Q ss_pred ccCCccc------------------------------------------------------CCccccEEECCCCccccc-
Q 040206 129 GQIPQCL------------------------------------------------------GNSTLETLDLGMNNFQGS- 153 (347)
Q Consensus 129 ~~~~~~~------------------------------------------------------~~~~L~~L~l~~~~~~~~- 153 (347)
....... .+++|++|++++|.+...
T Consensus 226 ~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~l~~~~~L~~Ls~~~~~~~~~l~~~~~~~~~L~~L~L~~~~l~~~~ 305 (594)
T 2p1m_B 226 KLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYATVQSYD 305 (594)
T ss_dssp HHHHHHHHCTTCSEEECSBCCCCCCHHHHHHHHHHHHTCTTCCEEECCBTCCGGGGGGGHHHHTTCCEEECTTCCCCHHH
T ss_pred HHHHHHhcCCcceEcccccccCccchhhHHHHHHHHhcCCCcccccCCcccchhhHHHHHHhhCCCCEEEccCCCCCHHH
Confidence 1000000 124555666665553321
Q ss_pred cCccCCCCCCccEEEccCCcccCC-CccccccCCCCcEEEccC---------CcccCCCCccc-cCCCCCCeEEecCCcc
Q 040206 154 IPQTNAKGCNLTSLRLSGNHLEGP-LPPSLINCVNLQFLDVGN---------NNLSGPIPECL-GNSTRLSFLDVGNNSL 222 (347)
Q Consensus 154 ~~~~~~~~~~L~~L~l~~~~~~~~-~~~~l~~~~~L~~L~l~~---------n~~~~~~~~~l-~~~~~L~~L~l~~~~~ 222 (347)
....+..+++|++|++.+| ++.. .+.....+++|++|++.+ +.+.+.....+ ..+++|+.|.+..+.+
T Consensus 306 l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~~l 384 (594)
T 2p1m_B 306 LVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQM 384 (594)
T ss_dssp HHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEEESCC
T ss_pred HHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCCCCCEEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHHHhcCCc
Confidence 1112334556666666655 2211 111122356666666632 12221111111 2355666665555555
Q ss_pred ccCcCcccc--ccCCcEEEcc--c----CcccccCCh-h----hhcccc------ccCCC----cCcc-CCCCCcEEEcc
Q 040206 223 SGPIPECLA--NSTLEILDMR--M----NKFSGSLPQ-N----ICKKLC------FGPLP----PSLV-NCQYLEVLDVG 278 (347)
Q Consensus 223 ~~~~~~~~~--~~~L~~L~L~--~----~~~~~~~~~-~----~~~~~~------~~~l~----~~~~-~~~~L~~L~L~ 278 (347)
++.....+. .++|+.|+++ + +.+++.... . +..... .+.+. ..+. .+++|++|+++
T Consensus 385 ~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~~l~~~~~~~l~~~~~~L~~L~L~ 464 (594)
T 2p1m_B 385 TNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSGLLTDKVFEYIGTYAKKMEMLSVA 464 (594)
T ss_dssp CHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHCTTCCEEEEE
T ss_pred CHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecCcccHHHHHHHHHhchhccEeecc
Confidence 443332222 3567777776 2 233311000 0 000000 00000 1122 37889999999
Q ss_pred CCccCCccchhh-hhccCCCEEEcccceeecccCC-ccccceeeeee
Q 040206 279 NNQIDDTFLYWL-DVLLQLQVLILRSNRFWGPIGK-LRSRWSGHFIV 323 (347)
Q Consensus 279 ~n~i~~~~~~~~-~~l~~L~~l~L~~n~~~~~~~~-~~~~~~~~~~~ 323 (347)
+|.+++.....+ ..+++|+.|++++|++++.... .......+..+
T Consensus 465 ~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L 511 (594)
T 2p1m_B 465 FAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSL 511 (594)
T ss_dssp SCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEE
T ss_pred CCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEE
Confidence 998876555444 6789999999999998654433 33334444433
No 96
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.79 E-value=1.7e-18 Score=151.23 Aligned_cols=236 Identities=17% Similarity=0.117 Sum_probs=147.8
Q ss_pred cEEEcCCCcCCCCCCCCCCCCcEEEccCCCCCccCCCC---CCCccEEEcccCcccccC-CccccCCCCccE-EEcccCc
Q 040206 52 QFLILSQNVLTSIDHLPWKNLQYLTLDSNLLQGSLPDL---PPHMVQLLISNNSLTGEI-PSSFCNLSSIQY-LNLSNNS 126 (347)
Q Consensus 52 ~~L~l~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~~---~~~L~~L~l~~~~~~~~~-~~~~~~l~~L~~-L~l~~~~ 126 (347)
++++.+++.++.++..-.+++++|++++|+++...... +++|++|++++|.+.... +.+|.+++++++ +.+.+|.
T Consensus 12 ~~v~C~~~~Lt~iP~~l~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~ 91 (350)
T 4ay9_X 12 RVFLCQESKVTEIPSDLPRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANN 91 (350)
T ss_dssp TEEEEESTTCCSCCTTCCTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETT
T ss_pred CEEEecCCCCCccCcCcCCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCc
Confidence 56777777888877655577888888888887655433 477888888888765433 346677777665 4455567
Q ss_pred ccccCCccc-CCccccEEECCCCccccccCccCCCCCCccEEEccC-CcccCCCccccccC-CCCcEEEccCCcccCCCC
Q 040206 127 LSGQIPQCL-GNSTLETLDLGMNNFQGSIPQTNAKGCNLTSLRLSG-NHLEGPLPPSLINC-VNLQFLDVGNNNLSGPIP 203 (347)
Q Consensus 127 ~~~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~-~~~~~~~~~~l~~~-~~L~~L~l~~n~~~~~~~ 203 (347)
+....+..+ .+++|+.|++++|.+....+..+....++..+++.+ +.+....+..+..+ ..++.|++++|.+....
T Consensus 92 l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~i~- 170 (350)
T 4ay9_X 92 LLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIH- 170 (350)
T ss_dssp CCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEEC-
T ss_pred ccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccccCCC-
Confidence 776655554 456788888888777655555555556677777754 34543444445544 35777888888777433
Q ss_pred ccccCCCCCCeEEecC-CccccCcCcccc-ccCCcEEEcccCcccccCChhhhccccccCCCcCccCCCCCcEEEccCCc
Q 040206 204 ECLGNSTRLSFLDVGN-NSLSGPIPECLA-NSTLEILDMRMNKFSGSLPQNICKKLCFGPLPPSLVNCQYLEVLDVGNNQ 281 (347)
Q Consensus 204 ~~l~~~~~L~~L~l~~-~~~~~~~~~~~~-~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~ 281 (347)
.......+|+.+.+.+ |.++......+. .++|+.|++++|+++. +|. ..+.+|++|.+.++.
T Consensus 171 ~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~--------------lp~--~~~~~L~~L~~l~~~ 234 (350)
T 4ay9_X 171 NSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHS--------------LPS--YGLENLKKLRARSTY 234 (350)
T ss_dssp TTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCC--------------CCS--SSCTTCCEEECTTCT
T ss_pred hhhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCc--------------cCh--hhhccchHhhhccCC
Confidence 3333455677777764 455544444433 3778888888887772 432 234556666665554
Q ss_pred cCCccchhhhhccCCCEEEcccce
Q 040206 282 IDDTFLYWLDVLLQLQVLILRSNR 305 (347)
Q Consensus 282 i~~~~~~~~~~l~~L~~l~L~~n~ 305 (347)
--+..|. +..+++|+.+++.++.
T Consensus 235 ~l~~lP~-l~~l~~L~~l~l~~~~ 257 (350)
T 4ay9_X 235 NLKKLPT-LEKLVALMEASLTYPS 257 (350)
T ss_dssp TCCCCCC-TTTCCSCCEEECSCHH
T ss_pred CcCcCCC-chhCcChhhCcCCCCc
Confidence 3333442 5677788888876543
No 97
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.78 E-value=7.5e-18 Score=154.91 Aligned_cols=188 Identities=23% Similarity=0.275 Sum_probs=105.2
Q ss_pred cccEEEcCCCcCCCCCCCCCCCCcEEEccCCCCCccCCCCCCCccEEEcccCcccccCCccccCCCCccEEEcccCcccc
Q 040206 50 TLQFLILSQNVLTSIDHLPWKNLQYLTLDSNLLQGSLPDLPPHMVQLLISNNSLTGEIPSSFCNLSSIQYLNLSNNSLSG 129 (347)
Q Consensus 50 ~L~~L~l~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~ 129 (347)
+|+.|++++|.++.++..-+++|++|++++|.++..+ ..+++|++|++++|.++. +|. +..
T Consensus 60 ~L~~L~Ls~n~L~~lp~~l~~~L~~L~Ls~N~l~~ip-~~l~~L~~L~Ls~N~l~~-ip~-l~~---------------- 120 (571)
T 3cvr_A 60 QFSELQLNRLNLSSLPDNLPPQITVLEITQNALISLP-ELPASLEYLDACDNRLST-LPE-LPA---------------- 120 (571)
T ss_dssp TCSEEECCSSCCSCCCSCCCTTCSEEECCSSCCSCCC-CCCTTCCEEECCSSCCSC-CCC-CCT----------------
T ss_pred CccEEEeCCCCCCccCHhHcCCCCEEECcCCCCcccc-cccCCCCEEEccCCCCCC-cch-hhc----------------
Confidence 6667777766666665544566666666666665333 334445555555554443 222 222
Q ss_pred cCCcccCCccccEEECCCCccccccCccCCCCCCccEEEccCCcccCCCccccccCCCCcEEEccCCcccCCCCccccCC
Q 040206 130 QIPQCLGNSTLETLDLGMNNFQGSIPQTNAKGCNLTSLRLSGNHLEGPLPPSLINCVNLQFLDVGNNNLSGPIPECLGNS 209 (347)
Q Consensus 130 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~~ 209 (347)
+|+.|++++|.+.. +|. .+++|+.|++++|.++. +|. .+++|+.|++++|.+.+ +|. +.
T Consensus 121 ---------~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~L~~-lp~-l~-- 179 (571)
T 3cvr_A 121 ---------SLKHLDVDNNQLTM-LPE---LPALLEYINADNNQLTM-LPE---LPTSLEVLSVRNNQLTF-LPE-LP-- 179 (571)
T ss_dssp ---------TCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC-CC--
T ss_pred ---------CCCEEECCCCcCCC-CCC---cCccccEEeCCCCccCc-CCC---cCCCcCEEECCCCCCCC-cch-hh--
Confidence 44555555554442 222 34555555555555553 232 34566666666666653 333 33
Q ss_pred CCCCeEEecCCccccCcCccccccCC-------cEEEcccCcccccCChhhhccccccCCCcCccCCCCCcEEEccCCcc
Q 040206 210 TRLSFLDVGNNSLSGPIPECLANSTL-------EILDMRMNKFSGSLPQNICKKLCFGPLPPSLVNCQYLEVLDVGNNQI 282 (347)
Q Consensus 210 ~~L~~L~l~~~~~~~~~~~~~~~~~L-------~~L~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~i 282 (347)
++|+.|++++|.++.... +.. +| +.|++++|.++ .+|..+..+++|+.|+|++|.+
T Consensus 180 ~~L~~L~Ls~N~L~~lp~--~~~-~L~~~~~~L~~L~Ls~N~l~--------------~lp~~l~~l~~L~~L~L~~N~l 242 (571)
T 3cvr_A 180 ESLEALDVSTNLLESLPA--VPV-RNHHSEETEIFFRCRENRIT--------------HIPENILSLDPTCTIILEDNPL 242 (571)
T ss_dssp TTCCEEECCSSCCSSCCC--CC---------CCEEEECCSSCCC--------------CCCGGGGGSCTTEEEECCSSSC
T ss_pred CCCCEEECcCCCCCchhh--HHH-hhhcccccceEEecCCCcce--------------ecCHHHhcCCCCCEEEeeCCcC
Confidence 566666666666653222 222 45 78888888777 3555566678888888888888
Q ss_pred CCccchhhhhcc
Q 040206 283 DDTFLYWLDVLL 294 (347)
Q Consensus 283 ~~~~~~~~~~l~ 294 (347)
++..+..+..+.
T Consensus 243 ~~~~p~~l~~l~ 254 (571)
T 3cvr_A 243 SSRIRESLSQQT 254 (571)
T ss_dssp CHHHHHHHHHHH
T ss_pred CCcCHHHHHHhh
Confidence 777776666653
No 98
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.78 E-value=4.3e-18 Score=144.66 Aligned_cols=169 Identities=25% Similarity=0.267 Sum_probs=79.6
Q ss_pred CCccEEEcccCcccccCCccccCCCCccEEEcccCcccccCCcccCCccccEEECCCCccccccCccCCCCCCccEEEcc
Q 040206 91 PHMVQLLISNNSLTGEIPSSFCNLSSIQYLNLSNNSLSGQIPQCLGNSTLETLDLGMNNFQGSIPQTNAKGCNLTSLRLS 170 (347)
Q Consensus 91 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~ 170 (347)
++|++|++++|.+... ..+..+++|+.|++++|.+....+ ...+++|+.|++++|.+.. .
T Consensus 46 ~~L~~L~l~~~~i~~~--~~~~~l~~L~~L~L~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~-~---------------- 105 (291)
T 1h6t_A 46 NSIDQIIANNSDIKSV--QGIQYLPNVTKLFLNGNKLTDIKP-LANLKNLGWLFLDENKVKD-L---------------- 105 (291)
T ss_dssp HTCCEEECTTSCCCCC--TTGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCC-G----------------
T ss_pred CcccEEEccCCCcccC--hhHhcCCCCCEEEccCCccCCCcc-cccCCCCCEEECCCCcCCC-C----------------
Confidence 4555555555555432 124455555555555555543332 3334445555555554432 1
Q ss_pred CCcccCCCccccccCCCCcEEEccCCcccCCCCccccCCCCCCeEEecCCccccCcCccccccCCcEEEcccCcccccCC
Q 040206 171 GNHLEGPLPPSLINCVNLQFLDVGNNNLSGPIPECLGNSTRLSFLDVGNNSLSGPIPECLANSTLEILDMRMNKFSGSLP 250 (347)
Q Consensus 171 ~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~ 250 (347)
..+..+++|++|++++|.+.+. ..+..+++|+.|++++|.+++. ......++|+.|++++|.+.+
T Consensus 106 ---------~~l~~l~~L~~L~L~~n~i~~~--~~l~~l~~L~~L~l~~n~l~~~-~~l~~l~~L~~L~L~~N~l~~--- 170 (291)
T 1h6t_A 106 ---------SSLKDLKKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDNQISD--- 170 (291)
T ss_dssp ---------GGGTTCTTCCEEECTTSCCCCC--GGGGGCTTCCEEECCSSCCCCC-GGGGGCTTCSEEECCSSCCCC---
T ss_pred ---------hhhccCCCCCEEECCCCcCCCC--hhhcCCCCCCEEEccCCcCCcc-hhhccCCCCCEEEccCCcccc---
Confidence 2244444555555555544422 2344445555555555544432 222223455555555555542
Q ss_pred hhhhccccccCCCcCccCCCCCcEEEccCCccCCccchhhhhccCCCEEEcccceeec
Q 040206 251 QNICKKLCFGPLPPSLVNCQYLEVLDVGNNQIDDTFLYWLDVLLQLQVLILRSNRFWG 308 (347)
Q Consensus 251 ~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~l~L~~n~~~~ 308 (347)
++. +..+++|++|++++|.+++.. .+..+++|+.|++++|++..
T Consensus 171 -----------~~~-l~~l~~L~~L~L~~N~i~~l~--~l~~l~~L~~L~l~~n~i~~ 214 (291)
T 1h6t_A 171 -----------IVP-LAGLTKLQNLYLSKNHISDLR--ALAGLKNLDVLELFSQECLN 214 (291)
T ss_dssp -----------CGG-GTTCTTCCEEECCSSCCCBCG--GGTTCTTCSEEEEEEEEEEC
T ss_pred -----------chh-hcCCCccCEEECCCCcCCCCh--hhccCCCCCEEECcCCcccC
Confidence 221 444555555555555555421 24555555555555555544
No 99
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.78 E-value=5.9e-18 Score=155.60 Aligned_cols=184 Identities=28% Similarity=0.342 Sum_probs=143.1
Q ss_pred CccEEeccCCcccccCChhhhhcCCCcccEEEcCCCcCCCCCCCCCCCCcEEEccCCCCCccCCCCCCCccEEEcccCcc
Q 040206 24 QLEWLDLSKNQIRGRIPSWMWDIGVHTLQFLILSQNVLTSIDHLPWKNLQYLTLDSNLLQGSLPDLPPHMVQLLISNNSL 103 (347)
Q Consensus 24 ~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~L~~L~l~~~~~ 103 (347)
+++.|++++|++++ +|..++ ++|++|++++|.++.++ ..+++|++|++++|.++..+. +..+|++|++++|.+
T Consensus 60 ~L~~L~Ls~n~L~~-lp~~l~----~~L~~L~Ls~N~l~~ip-~~l~~L~~L~Ls~N~l~~ip~-l~~~L~~L~Ls~N~l 132 (571)
T 3cvr_A 60 QFSELQLNRLNLSS-LPDNLP----PQITVLEITQNALISLP-ELPASLEYLDACDNRLSTLPE-LPASLKHLDVDNNQL 132 (571)
T ss_dssp TCSEEECCSSCCSC-CCSCCC----TTCSEEECCSSCCSCCC-CCCTTCCEEECCSSCCSCCCC-CCTTCCEEECCSSCC
T ss_pred CccEEEeCCCCCCc-cCHhHc----CCCCEEECcCCCCcccc-cccCCCCEEEccCCCCCCcch-hhcCCCEEECCCCcC
Confidence 88999999988874 666552 77999999999888888 677889999999998887554 556899999999988
Q ss_pred cccCCccccCCCCccEEEcccCcccccCCcccCCccccEEECCCCccccccCccCCCCCCccEEEccCCcccCCCccccc
Q 040206 104 TGEIPSSFCNLSSIQYLNLSNNSLSGQIPQCLGNSTLETLDLGMNNFQGSIPQTNAKGCNLTSLRLSGNHLEGPLPPSLI 183 (347)
Q Consensus 104 ~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~ 183 (347)
+. +|. .+++|+.|++++|.++..+. ..++|+.|++++|.+.. +|. +. ++|+.|++++|.++ .+|. +.
T Consensus 133 ~~-lp~---~l~~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~N~L~~-lp~-l~--~~L~~L~Ls~N~L~-~lp~-~~ 199 (571)
T 3cvr_A 133 TM-LPE---LPALLEYINADNNQLTMLPE---LPTSLEVLSVRNNQLTF-LPE-LP--ESLEALDVSTNLLE-SLPA-VP 199 (571)
T ss_dssp SC-CCC---CCTTCCEEECCSSCCSCCCC---CCTTCCEEECCSSCCSC-CCC-CC--TTCCEEECCSSCCS-SCCC-CC
T ss_pred CC-CCC---cCccccEEeCCCCccCcCCC---cCCCcCEEECCCCCCCC-cch-hh--CCCCEEECcCCCCC-chhh-HH
Confidence 85 444 57889999999998886443 46789999999998874 555 44 78999999999888 4454 44
Q ss_pred cCCCC-------cEEEccCCcccCCCCccccCCCCCCeEEecCCccccCcCccc
Q 040206 184 NCVNL-------QFLDVGNNNLSGPIPECLGNSTRLSFLDVGNNSLSGPIPECL 230 (347)
Q Consensus 184 ~~~~L-------~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~ 230 (347)
. +| +.|++++|.+. .+|..+..+++|+.|++++|.+++..+..+
T Consensus 200 ~--~L~~~~~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~L~~N~l~~~~p~~l 250 (571)
T 3cvr_A 200 V--RNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIRESL 250 (571)
T ss_dssp ----------CCEEEECCSSCCC-CCCGGGGGSCTTEEEECCSSSCCHHHHHHH
T ss_pred H--hhhcccccceEEecCCCcce-ecCHHHhcCCCCCEEEeeCCcCCCcCHHHH
Confidence 3 66 99999999988 467777779999999999998876555433
No 100
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.78 E-value=5.5e-18 Score=148.00 Aligned_cols=191 Identities=21% Similarity=0.194 Sum_probs=92.5
Q ss_pred EEEecCCCCCCCChhhhcCCCccEEeccCCcccccCChhhhhcCCCcccEEEcCCCcCCC-CCCC---CCCCCcE-EEcc
Q 040206 4 KTQVKTCNISEFPDILRTQHQLEWLDLSKNQIRGRIPSWMWDIGVHTLQFLILSQNVLTS-IDHL---PWKNLQY-LTLD 78 (347)
Q Consensus 4 ~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~-~~~~---~~~~L~~-L~l~ 78 (347)
.++.++++++.+|..+. +++++|++++|+++ .+|...+. ++++|++|++++|.+.. ++.. .++++++ +.+.
T Consensus 13 ~v~C~~~~Lt~iP~~l~--~~l~~L~Ls~N~i~-~i~~~~f~-~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~ 88 (350)
T 4ay9_X 13 VFLCQESKVTEIPSDLP--RNAIELRFVLTKLR-VIQKGAFS-GFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEK 88 (350)
T ss_dssp EEEEESTTCCSCCTTCC--TTCSEEEEESCCCS-EECTTSST-TCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEE
T ss_pred EEEecCCCCCccCcCcC--CCCCEEEccCCcCC-CcCHHHHc-CCCCCCEEECcCCCCCCccChhHhhcchhhhhhhccc
Confidence 45566667777776552 56777777777776 45443332 44777777777776533 3332 2334333 3444
Q ss_pred CCCCCccCCCC---CCCccEEEcccCcccccCCccccCCCCccEEEccc-CcccccCCccc-CCc-cccEEECCCCcccc
Q 040206 79 SNLLQGSLPDL---PPHMVQLLISNNSLTGEIPSSFCNLSSIQYLNLSN-NSLSGQIPQCL-GNS-TLETLDLGMNNFQG 152 (347)
Q Consensus 79 ~~~~~~~~~~~---~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~-~~~~~~~~~~~-~~~-~L~~L~l~~~~~~~ 152 (347)
.|++....+.. +++|++|++++|.+....+..+....++..+++.+ +.+.......+ ... .++.|++++|.+.
T Consensus 89 ~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~- 167 (350)
T 4ay9_X 89 ANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQ- 167 (350)
T ss_dssp ETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCC-
T ss_pred CCcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhcccccccc-
Confidence 45554433322 24555555555555543333344444455555533 23333332222 111 3455555555554
Q ss_pred ccCccCCCCCCccEEEccC-CcccCCCccccccCCCCcEEEccCCccc
Q 040206 153 SIPQTNAKGCNLTSLRLSG-NHLEGPLPPSLINCVNLQFLDVGNNNLS 199 (347)
Q Consensus 153 ~~~~~~~~~~~L~~L~l~~-~~~~~~~~~~l~~~~~L~~L~l~~n~~~ 199 (347)
.++.......+++++.+.+ +.++...+.+|..+++|+.|++++|.+.
T Consensus 168 ~i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~ 215 (350)
T 4ay9_X 168 EIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIH 215 (350)
T ss_dssp EECTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCC
T ss_pred CCChhhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcC
Confidence 2232223334555555543 3333232334455555555555555554
No 101
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.77 E-value=4.2e-18 Score=137.53 Aligned_cols=179 Identities=16% Similarity=0.119 Sum_probs=125.8
Q ss_pred EEEcccCcccccCCcccCCccccEEECCCCccccccCccCCCCCCccEEEccCCcccCCCccccccCCCCcEEEccCCcc
Q 040206 119 YLNLSNNSLSGQIPQCLGNSTLETLDLGMNNFQGSIPQTNAKGCNLTSLRLSGNHLEGPLPPSLINCVNLQFLDVGNNNL 198 (347)
Q Consensus 119 ~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~ 198 (347)
.++..++.+...+... .+++++|++++|.+....+..+..+++|++|++++|.++...+..+..+++|++|++++|.+
T Consensus 11 ~v~c~~~~l~~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l 88 (208)
T 2o6s_A 11 TVECYSQGRTSVPTGI--PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQL 88 (208)
T ss_dssp EEECCSSCCSSCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred EEEecCCCccCCCCCC--CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcC
Confidence 3444555444333222 23677777777777655555567777888888888877755555567778888888888887
Q ss_pred cCCCCccccCCCCCCeEEecCCccccCcCcccc-ccCCcEEEcccCcccccCChhhhccccccCCCcCccCCCCCcEEEc
Q 040206 199 SGPIPECLGNSTRLSFLDVGNNSLSGPIPECLA-NSTLEILDMRMNKFSGSLPQNICKKLCFGPLPPSLVNCQYLEVLDV 277 (347)
Q Consensus 199 ~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~-~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~L 277 (347)
.+..+..+..+++|+.|++++|.+++..+..+. .++|+.|++++|.+++. .+..+..+++|++|++
T Consensus 89 ~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~-------------~~~~~~~l~~L~~L~l 155 (208)
T 2o6s_A 89 QSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSV-------------PDGVFDRLTSLQYIWL 155 (208)
T ss_dssp CCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCC-------------CTTTTTTCTTCCEEEC
T ss_pred CccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCcccee-------------CHHHhccCCCccEEEe
Confidence 766556677788888888888887765555433 47888888888888742 2234677888999999
Q ss_pred cCCccCCccchhhhhccCCCEEEcccceeecccCCcccccee
Q 040206 278 GNNQIDDTFLYWLDVLLQLQVLILRSNRFWGPIGKLRSRWSG 319 (347)
Q Consensus 278 ~~n~i~~~~~~~~~~l~~L~~l~L~~n~~~~~~~~~~~~~~~ 319 (347)
++|.+.+ .+++|++|++++|.++|.+|..+.....
T Consensus 156 ~~N~~~~-------~~~~l~~L~~~~n~~~g~ip~~~~~l~~ 190 (208)
T 2o6s_A 156 HDNPWDC-------TCPGIRYLSEWINKHSGVVRNSAGSVAP 190 (208)
T ss_dssp CSCCBCC-------CTTTTHHHHHHHHHCTTTBBCTTSSBCT
T ss_pred cCCCeec-------CCCCHHHHHHHHHhCCceeeccCccccC
Confidence 9987653 4568888999999999988887766554
No 102
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.77 E-value=1e-17 Score=137.18 Aligned_cols=156 Identities=24% Similarity=0.215 Sum_probs=108.9
Q ss_pred cccEEECCCCccccccCccCCCCCCccEEEccCCcccCCCccccccCCCCcEEEccCCcccCCCCccccCCCCCCeEEec
Q 040206 139 TLETLDLGMNNFQGSIPQTNAKGCNLTSLRLSGNHLEGPLPPSLINCVNLQFLDVGNNNLSGPIPECLGNSTRLSFLDVG 218 (347)
Q Consensus 139 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~ 218 (347)
+-+.++.+++.+. .+|..+ .++|++|++++|.++...+..+..+++|+.|++++|.+....+..+..+++|+.|+++
T Consensus 20 s~~~v~c~~~~l~-~ip~~~--~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls 96 (229)
T 3e6j_A 20 SGTTVDCRSKRHA-SVPAGI--PTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLG 96 (229)
T ss_dssp ETTEEECTTSCCS-SCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred eCCEeEccCCCcC-ccCCCC--CCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECC
Confidence 3455666666554 444433 2567777777777776666667777777777777777765555566777777777777
Q ss_pred CCccccCcCcccc-ccCCcEEEcccCcccccCChhhhccccccCCCcCccCCCCCcEEEccCCccCCccchhhhhccCCC
Q 040206 219 NNSLSGPIPECLA-NSTLEILDMRMNKFSGSLPQNICKKLCFGPLPPSLVNCQYLEVLDVGNNQIDDTFLYWLDVLLQLQ 297 (347)
Q Consensus 219 ~~~~~~~~~~~~~-~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~ 297 (347)
+|.++...+..+. .++|+.|++++|.+. .+|..+..+++|++|++++|.+....+..+..+++|+
T Consensus 97 ~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~--------------~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~ 162 (229)
T 3e6j_A 97 TNQLTVLPSAVFDRLVHLKELFMCCNKLT--------------ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLT 162 (229)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCCC--------------SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred CCcCCccChhHhCcchhhCeEeccCCccc--------------ccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCC
Confidence 7777755554433 467777888877777 3555677788888888888888876666777888888
Q ss_pred EEEcccceeecccC
Q 040206 298 VLILRSNRFWGPIG 311 (347)
Q Consensus 298 ~l~L~~n~~~~~~~ 311 (347)
.|++++|++.+..+
T Consensus 163 ~L~l~~N~~~c~c~ 176 (229)
T 3e6j_A 163 HAYLFGNPWDCECR 176 (229)
T ss_dssp EEECTTSCBCTTBG
T ss_pred EEEeeCCCccCCcc
Confidence 88888888877654
No 103
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.76 E-value=1.4e-17 Score=135.54 Aligned_cols=155 Identities=19% Similarity=0.213 Sum_probs=106.0
Q ss_pred cEEECCCCccccccCccCCCCCCccEEEccCCcccCCCccccccCCCCcEEEccCCcccCCCCccccCCCCCCeEEecCC
Q 040206 141 ETLDLGMNNFQGSIPQTNAKGCNLTSLRLSGNHLEGPLPPSLINCVNLQFLDVGNNNLSGPIPECLGNSTRLSFLDVGNN 220 (347)
Q Consensus 141 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~~ 220 (347)
+.++++++.+. .+|..+. +.++.|++++|.++...+..+..+++|+.|++++|.+.+..+..+..+++|+.|++++|
T Consensus 14 ~~v~c~~~~l~-~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N 90 (220)
T 2v9t_B 14 NIVDCRGKGLT-EIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGN 90 (220)
T ss_dssp TEEECTTSCCS-SCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSS
T ss_pred CEEEcCCCCcC-cCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCC
Confidence 44555555554 3343332 46667777777666555556666777777777777776665667777777777777777
Q ss_pred ccccCcCcccc-ccCCcEEEcccCcccccCChhhhccccccCCCcCccCCCCCcEEEccCCccCCccchhhhhccCCCEE
Q 040206 221 SLSGPIPECLA-NSTLEILDMRMNKFSGSLPQNICKKLCFGPLPPSLVNCQYLEVLDVGNNQIDDTFLYWLDVLLQLQVL 299 (347)
Q Consensus 221 ~~~~~~~~~~~-~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~l 299 (347)
.++...+..+. .++|+.|+|++|.+.+. .+..|..+++|++|+|++|.+++..+..+..+++|+.|
T Consensus 91 ~l~~l~~~~f~~l~~L~~L~L~~N~l~~~-------------~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L 157 (220)
T 2v9t_B 91 KITELPKSLFEGLFSLQLLLLNANKINCL-------------RVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTM 157 (220)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCCCC-------------CTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEE
T ss_pred cCCccCHhHccCCCCCCEEECCCCCCCEe-------------CHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEE
Confidence 77655544433 36777777777777743 23457778888888888888888777778888888888
Q ss_pred EcccceeecccC
Q 040206 300 ILRSNRFWGPIG 311 (347)
Q Consensus 300 ~L~~n~~~~~~~ 311 (347)
++++|++.....
T Consensus 158 ~L~~N~~~c~c~ 169 (220)
T 2v9t_B 158 HLAQNPFICDCH 169 (220)
T ss_dssp ECCSSCEECSGG
T ss_pred EeCCCCcCCCCc
Confidence 888888876543
No 104
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.75 E-value=1.3e-17 Score=146.29 Aligned_cols=179 Identities=24% Similarity=0.196 Sum_probs=100.2
Q ss_pred EEEcccCcccccCCcccCCccccEEECCCCccccccCccCC-CCCCccEEEccCCcccCCCccccccCCCCcEEEccCCc
Q 040206 119 YLNLSNNSLSGQIPQCLGNSTLETLDLGMNNFQGSIPQTNA-KGCNLTSLRLSGNHLEGPLPPSLINCVNLQFLDVGNNN 197 (347)
Q Consensus 119 ~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~ 197 (347)
.++++++.+...+... ...++.|++++|.+....+..+. .+++|++|++++|.++...+..+..+++|++|++++|.
T Consensus 22 ~l~c~~~~l~~iP~~~--~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~ 99 (361)
T 2xot_A 22 ILSCSKQQLPNVPQSL--PSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNH 99 (361)
T ss_dssp EEECCSSCCSSCCSSC--CTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred EEEeCCCCcCccCccC--CCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCCc
Confidence 4444444444322211 12355555555555544444444 55666666666666654444555666666666666666
Q ss_pred ccCCCCccccCCCCCCeEEecCCccccCcCcccc-ccCCcEEEcccCcccccCChhhhccccccCCCcCccCCCCCcEEE
Q 040206 198 LSGPIPECLGNSTRLSFLDVGNNSLSGPIPECLA-NSTLEILDMRMNKFSGSLPQNICKKLCFGPLPPSLVNCQYLEVLD 276 (347)
Q Consensus 198 ~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~-~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~ 276 (347)
+....+..+..+++|+.|++++|.+....+..+. .++|+.|+|++|.++. +|... ...+..+++|+.|+
T Consensus 100 l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~-l~~~~---------~~~~~~l~~L~~L~ 169 (361)
T 2xot_A 100 LHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISR-FPVEL---------IKDGNKLPKLMLLD 169 (361)
T ss_dssp CCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCS-CCGGG---------TC----CTTCCEEE
T ss_pred CCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCe-eCHHH---------hcCcccCCcCCEEE
Confidence 6544445556666666666666666544433332 2566666666666663 11110 00114577788888
Q ss_pred ccCCccCCccchhhhhccC--CCEEEcccceeecc
Q 040206 277 VGNNQIDDTFLYWLDVLLQ--LQVLILRSNRFWGP 309 (347)
Q Consensus 277 L~~n~i~~~~~~~~~~l~~--L~~l~L~~n~~~~~ 309 (347)
|++|.+...+...+..++. |+.|+|++|++..+
T Consensus 170 L~~N~l~~l~~~~~~~l~~~~l~~l~l~~N~~~C~ 204 (361)
T 2xot_A 170 LSSNKLKKLPLTDLQKLPAWVKNGLYLHNNPLECD 204 (361)
T ss_dssp CCSSCCCCCCHHHHHHSCHHHHTTEECCSSCEECC
T ss_pred CCCCCCCccCHHHhhhccHhhcceEEecCCCccCC
Confidence 8888887766666777765 37788888887654
No 105
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.75 E-value=2.8e-17 Score=133.69 Aligned_cols=155 Identities=19% Similarity=0.175 Sum_probs=111.2
Q ss_pred cEEECCCCccccccCccCCCCCCccEEEccCCcccCCCc-cccccCCCCcEEEccCCcccCCCCccccCCCCCCeEEecC
Q 040206 141 ETLDLGMNNFQGSIPQTNAKGCNLTSLRLSGNHLEGPLP-PSLINCVNLQFLDVGNNNLSGPIPECLGNSTRLSFLDVGN 219 (347)
Q Consensus 141 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~l~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~ 219 (347)
+.++++++.+. .+|..+ ...+++|++++|.++...+ ..+..+++|+.|++++|.+.+..+..+..+++|++|++++
T Consensus 14 ~~l~~s~n~l~-~iP~~~--~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~ 90 (220)
T 2v70_A 14 TTVDCSNQKLN-KIPEHI--PQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTS 90 (220)
T ss_dssp TEEECCSSCCS-SCCSCC--CTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CEeEeCCCCcc-cCccCC--CCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCC
Confidence 45666666665 344433 2345677777777664433 3467777788888888777766666777778888888888
Q ss_pred CccccCcCcccc-ccCCcEEEcccCcccccCChhhhccccccCCCcCccCCCCCcEEEccCCccCCccchhhhhccCCCE
Q 040206 220 NSLSGPIPECLA-NSTLEILDMRMNKFSGSLPQNICKKLCFGPLPPSLVNCQYLEVLDVGNNQIDDTFLYWLDVLLQLQV 298 (347)
Q Consensus 220 ~~~~~~~~~~~~-~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~ 298 (347)
|.+++..+..+. .++|++|++++|.+.+. .|..+..+++|++|+|++|.+++..+..+..+++|+.
T Consensus 91 N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~-------------~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~ 157 (220)
T 2v70_A 91 NRLENVQHKMFKGLESLKTLMLRSNRITCV-------------GNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLST 157 (220)
T ss_dssp SCCCCCCGGGGTTCSSCCEEECTTSCCCCB-------------CTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCE
T ss_pred CccCccCHhHhcCCcCCCEEECCCCcCCeE-------------CHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCE
Confidence 877766555443 37788888888888753 2446778888999999999988877888888889999
Q ss_pred EEcccceeecccC
Q 040206 299 LILRSNRFWGPIG 311 (347)
Q Consensus 299 l~L~~n~~~~~~~ 311 (347)
|++++|++.+..+
T Consensus 158 L~L~~N~l~c~c~ 170 (220)
T 2v70_A 158 LNLLANPFNCNCY 170 (220)
T ss_dssp EECCSCCEECSGG
T ss_pred EEecCcCCcCCCc
Confidence 9999999887655
No 106
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.75 E-value=1e-17 Score=155.63 Aligned_cols=189 Identities=21% Similarity=0.251 Sum_probs=117.9
Q ss_pred CcEEEccCCCCCccCC-CCCCCccEEEcccCcccccCCccccCCCCccEEEcccCcccccCCcccCCccccEEECCCCcc
Q 040206 72 LQYLTLDSNLLQGSLP-DLPPHMVQLLISNNSLTGEIPSSFCNLSSIQYLNLSNNSLSGQIPQCLGNSTLETLDLGMNNF 150 (347)
Q Consensus 72 L~~L~l~~~~~~~~~~-~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 150 (347)
+..+.+..+.+..... ..+++|+.|++++|.+... + .+..+++|+.|++++|.+....+ ...+++|+.|++++|.+
T Consensus 23 l~~l~l~~~~i~~~~~~~~L~~L~~L~l~~n~i~~l-~-~l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~l 99 (605)
T 1m9s_A 23 TIKDNLKKKSVTDAVTQNELNSIDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLTDIKP-LTNLKNLGWLFLDENKI 99 (605)
T ss_dssp HHHHHTTCSCTTSEECHHHHTTCCCCBCTTCCCCCC-T-TGGGCTTCCEEECTTSCCCCCGG-GGGCTTCCEEECCSSCC
T ss_pred HHHHhccCCCcccccchhcCCCCCEEECcCCCCCCC-h-HHccCCCCCEEEeeCCCCCCChh-hccCCCCCEEECcCCCC
Confidence 3334444444443221 2246777777777777633 2 46677778888887777765444 44566777777777776
Q ss_pred ccccCccCCCCCCccEEEccCCcccCCCccccccCCCCcEEEccCCcccCCCCccccCCCCCCeEEecCCccccCcCccc
Q 040206 151 QGSIPQTNAKGCNLTSLRLSGNHLEGPLPPSLINCVNLQFLDVGNNNLSGPIPECLGNSTRLSFLDVGNNSLSGPIPECL 230 (347)
Q Consensus 151 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~ 230 (347)
.. . ..+..+++|+.|++++|.+... ..+..+++|+.|++++|.+.+. ..+..+++|+.|++++|.+.+..+ ..
T Consensus 100 ~~-l-~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~-l~ 172 (605)
T 1m9s_A 100 KD-L-SSLKDLKKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP-LA 172 (605)
T ss_dssp CC-C-TTSTTCTTCCEEECTTSCCCCC--GGGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGG-GT
T ss_pred CC-C-hhhccCCCCCEEEecCCCCCCC--ccccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCchh-hc
Confidence 53 2 2566677777777777776632 3566777777777777777643 456667777777777777665444 33
Q ss_pred cccCCcEEEcccCcccccCChhhhccccccCCCcCccCCCCCcEEEccCCccCCc
Q 040206 231 ANSTLEILDMRMNKFSGSLPQNICKKLCFGPLPPSLVNCQYLEVLDVGNNQIDDT 285 (347)
Q Consensus 231 ~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~i~~~ 285 (347)
..++|+.|+|++|.+.+ + +.+..+++|+.|+|++|.+...
T Consensus 173 ~l~~L~~L~Ls~N~i~~--------------l-~~l~~l~~L~~L~L~~N~l~~~ 212 (605)
T 1m9s_A 173 GLTKLQNLYLSKNHISD--------------L-RALAGLKNLDVLELFSQECLNK 212 (605)
T ss_dssp TCTTCCEEECCSSCCCB--------------C-GGGTTCTTCSEEECCSEEEECC
T ss_pred cCCCCCEEECcCCCCCC--------------C-hHHccCCCCCEEEccCCcCcCC
Confidence 34667777777776663 2 1355666677777777766543
No 107
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.74 E-value=1.5e-17 Score=141.36 Aligned_cols=189 Identities=19% Similarity=0.233 Sum_probs=142.7
Q ss_pred CcccEEEcCCCcCCCCCC-CCCCCCcEEEccCCCCCccCC-CCCCCccEEEcccCcccccCCccccCCCCccEEEcccCc
Q 040206 49 HTLQFLILSQNVLTSIDH-LPWKNLQYLTLDSNLLQGSLP-DLPPHMVQLLISNNSLTGEIPSSFCNLSSIQYLNLSNNS 126 (347)
Q Consensus 49 ~~L~~L~l~~~~l~~~~~-~~~~~L~~L~l~~~~~~~~~~-~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~ 126 (347)
..+..+.+....++++.. ..+++|+.|++++|.+..... ..+++|++|++++|.+....+ +..+++|+.|++++|.
T Consensus 24 ~~~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~ 101 (291)
T 1h6t_A 24 AETIKDNLKKKSVTDAVTQNELNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENK 101 (291)
T ss_dssp HHHHHHHTTCSCTTSEECHHHHHTCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSC
T ss_pred HHHHHHHhcCCCcccccchhhcCcccEEEccCCCcccChhHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCc
Confidence 334455566666666433 567899999999999875532 335899999999999986544 8899999999999999
Q ss_pred ccccCCcccCCccccEEECCCCccccccCccCCCCCCccEEEccCCcccCCCccccccCCCCcEEEccCCcccCCCCccc
Q 040206 127 LSGQIPQCLGNSTLETLDLGMNNFQGSIPQTNAKGCNLTSLRLSGNHLEGPLPPSLINCVNLQFLDVGNNNLSGPIPECL 206 (347)
Q Consensus 127 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l 206 (347)
+... +....+++|++|++++|.+... ..+..+++|++|++++|.++.. ..+..+++|+.|++++|.+.+..+ +
T Consensus 102 l~~~-~~l~~l~~L~~L~L~~n~i~~~--~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~--l 174 (291)
T 1h6t_A 102 VKDL-SSLKDLKKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--L 174 (291)
T ss_dssp CCCG-GGGTTCTTCCEEECTTSCCCCC--GGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--G
T ss_pred CCCC-hhhccCCCCCEEECCCCcCCCC--hhhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccchh--h
Confidence 8853 4455677899999999988643 4567778888888888888754 567888888888888888875443 7
Q ss_pred cCCCCCCeEEecCCccccCcCccccccCCcEEEcccCcccc
Q 040206 207 GNSTRLSFLDVGNNSLSGPIPECLANSTLEILDMRMNKFSG 247 (347)
Q Consensus 207 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~ 247 (347)
..+++|+.|++++|.+++. +.....++|+.|++++|++..
T Consensus 175 ~~l~~L~~L~L~~N~i~~l-~~l~~l~~L~~L~l~~n~i~~ 214 (291)
T 1h6t_A 175 AGLTKLQNLYLSKNHISDL-RALAGLKNLDVLELFSQECLN 214 (291)
T ss_dssp TTCTTCCEEECCSSCCCBC-GGGTTCTTCSEEEEEEEEEEC
T ss_pred cCCCccCEEECCCCcCCCC-hhhccCCCCCEEECcCCcccC
Confidence 7788888888888887753 334444677777777777764
No 108
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.74 E-value=6.3e-17 Score=131.62 Aligned_cols=150 Identities=18% Similarity=0.225 Sum_probs=89.6
Q ss_pred EEEccCCCCCccCCCCCCCccEEEcccCcccccCCccccCCCCccEEEcccCcccccCCccc-CCccccEEECCCCcccc
Q 040206 74 YLTLDSNLLQGSLPDLPPHMVQLLISNNSLTGEIPSSFCNLSSIQYLNLSNNSLSGQIPQCL-GNSTLETLDLGMNNFQG 152 (347)
Q Consensus 74 ~L~l~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~ 152 (347)
.++++++.+...+...++++++|++++|.+..+.+..|..+++|+.|++++|.+....+..+ .+++|+.|++++|.+..
T Consensus 15 ~v~c~~~~l~~iP~~l~~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~ 94 (220)
T 2v9t_B 15 IVDCRGKGLTEIPTNLPETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITE 94 (220)
T ss_dssp EEECTTSCCSSCCSSCCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCCC
T ss_pred EEEcCCCCcCcCCCccCcCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCCc
Confidence 34444444444444444555555666665554555556666667777766666665544333 44566666666666654
Q ss_pred ccCccCCCCCCccEEEccCCcccCCCccccccCCCCcEEEccCCcccCCCCccccCCCCCCeEEecCCccc
Q 040206 153 SIPQTNAKGCNLTSLRLSGNHLEGPLPPSLINCVNLQFLDVGNNNLSGPIPECLGNSTRLSFLDVGNNSLS 223 (347)
Q Consensus 153 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~~~~~ 223 (347)
..+..+..+++|++|++++|.++...+..+..+++|+.|++++|.+.+..+..+..+++|+.|++++|.+.
T Consensus 95 l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 165 (220)
T 2v9t_B 95 LPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFI 165 (220)
T ss_dssp CCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEE
T ss_pred cCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcC
Confidence 44444556666666666666666555566666666777777776666555555666666666666666654
No 109
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.73 E-value=7.8e-17 Score=131.06 Aligned_cols=150 Identities=19% Similarity=0.231 Sum_probs=84.7
Q ss_pred EEEccCCCCCccCCCCCCCccEEEcccCcccccCC-ccccCCCCccEEEcccCcccccCCccc-CCccccEEECCCCccc
Q 040206 74 YLTLDSNLLQGSLPDLPPHMVQLLISNNSLTGEIP-SSFCNLSSIQYLNLSNNSLSGQIPQCL-GNSTLETLDLGMNNFQ 151 (347)
Q Consensus 74 ~L~l~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~~~~-~~~~L~~L~l~~~~~~ 151 (347)
.++++++.++..+...++.+++|++++|.+....+ ..|..+++|+.|++++|.+....+..+ .+++|++|++++|.+.
T Consensus 15 ~l~~s~n~l~~iP~~~~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~ 94 (220)
T 2v70_A 15 TVDCSNQKLNKIPEHIPQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLE 94 (220)
T ss_dssp EEECCSSCCSSCCSCCCTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCC
T ss_pred EeEeCCCCcccCccCCCCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCccC
Confidence 44444444444433334444555555555554322 345666666666666666665444332 4445666666666655
Q ss_pred cccCccCCCCCCccEEEccCCcccCCCccccccCCCCcEEEccCCcccCCCCccccCCCCCCeEEecCCccc
Q 040206 152 GSIPQTNAKGCNLTSLRLSGNHLEGPLPPSLINCVNLQFLDVGNNNLSGPIPECLGNSTRLSFLDVGNNSLS 223 (347)
Q Consensus 152 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~~~~~ 223 (347)
...+..+..+++|++|++++|.++...+..+..+++|+.|++++|.+.+..|..+..+++|+.|++++|.+.
T Consensus 95 ~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 166 (220)
T 2v70_A 95 NVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFN 166 (220)
T ss_dssp CCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEE
T ss_pred ccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCc
Confidence 444445556666666666666666555555666666666666666666555556666666666666666554
No 110
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.73 E-value=1.5e-17 Score=154.50 Aligned_cols=188 Identities=21% Similarity=0.260 Sum_probs=104.0
Q ss_pred CCccEEeccCCcccccCChhhhhcCCCcccEEEcCCCcCCCCCC-CCCCCCcEEEccCCCCCccCC-CCCCCccEEEccc
Q 040206 23 HQLEWLDLSKNQIRGRIPSWMWDIGVHTLQFLILSQNVLTSIDH-LPWKNLQYLTLDSNLLQGSLP-DLPPHMVQLLISN 100 (347)
Q Consensus 23 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~-~~~~~L~~L~l~~~~~~~~~~-~~~~~L~~L~l~~ 100 (347)
.++..+.+..+.+.+..+ +..+ ++|+.|+++++.+..++. ..+++|+.|++++|.+....+ ..+++|+.|++++
T Consensus 21 ~~l~~l~l~~~~i~~~~~--~~~L--~~L~~L~l~~n~i~~l~~l~~l~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~ 96 (605)
T 1m9s_A 21 AETIKDNLKKKSVTDAVT--QNEL--NSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDIKPLTNLKNLGWLFLDE 96 (605)
T ss_dssp HHHHHHHTTCSCTTSEEC--HHHH--TTCCCCBCTTCCCCCCTTGGGCTTCCEEECTTSCCCCCGGGGGCTTCCEEECCS
T ss_pred HHHHHHhccCCCcccccc--hhcC--CCCCEEECcCCCCCCChHHccCCCCCEEEeeCCCCCCChhhccCCCCCEEECcC
Confidence 334455666666653332 2233 778888888887777755 556777777777777665432 2235666666666
Q ss_pred CcccccCCccccCCCCccEEEcccCcccccCCcccCCccccEEECCCCccccccCccCCCCCCccEEEccCCcccCCCcc
Q 040206 101 NSLTGEIPSSFCNLSSIQYLNLSNNSLSGQIPQCLGNSTLETLDLGMNNFQGSIPQTNAKGCNLTSLRLSGNHLEGPLPP 180 (347)
Q Consensus 101 ~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~ 180 (347)
|.+... ..+..+++|+.|++++|.+... +....+++|+.|++++|.+... ..+..+++|+.|++++|.+....+
T Consensus 97 N~l~~l--~~l~~l~~L~~L~Ls~N~l~~l-~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~- 170 (605)
T 1m9s_A 97 NKIKDL--SSLKDLKKLKSLSLEHNGISDI-NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP- 170 (605)
T ss_dssp SCCCCC--TTSTTCTTCCEEECTTSCCCCC-GGGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGG-
T ss_pred CCCCCC--hhhccCCCCCEEEecCCCCCCC-ccccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCchh-
Confidence 665532 2455566666666666655532 3333445555555555555422 344455555555555555543322
Q ss_pred ccccCCCCcEEEccCCcccCCCCccccCCCCCCeEEecCCccc
Q 040206 181 SLINCVNLQFLDVGNNNLSGPIPECLGNSTRLSFLDVGNNSLS 223 (347)
Q Consensus 181 ~l~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~~~~~ 223 (347)
+..+++|+.|++++|.+.+. ..+..+++|+.|++++|.+.
T Consensus 171 -l~~l~~L~~L~Ls~N~i~~l--~~l~~l~~L~~L~L~~N~l~ 210 (605)
T 1m9s_A 171 -LAGLTKLQNLYLSKNHISDL--RALAGLKNLDVLELFSQECL 210 (605)
T ss_dssp -GTTCTTCCEEECCSSCCCBC--GGGTTCTTCSEEECCSEEEE
T ss_pred -hccCCCCCEEECcCCCCCCC--hHHccCCCCCEEEccCCcCc
Confidence 55555555555555555432 23455555555555555554
No 111
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.73 E-value=1.8e-16 Score=129.72 Aligned_cols=153 Identities=20% Similarity=0.204 Sum_probs=113.6
Q ss_pred CcEEEccCCCCCccCCCCCCCccEEEcccCcccccCCccccCCCCccEEEcccCcccccCCccc-CCccccEEECCCCcc
Q 040206 72 LQYLTLDSNLLQGSLPDLPPHMVQLLISNNSLTGEIPSSFCNLSSIQYLNLSNNSLSGQIPQCL-GNSTLETLDLGMNNF 150 (347)
Q Consensus 72 L~~L~l~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~-~~~~L~~L~l~~~~~ 150 (347)
.+.++++++.+...+...+++|++|++++|.+....+..+..+++|++|++++|.+....+..+ .+++|+.|++++|.+
T Consensus 21 ~~~v~c~~~~l~~ip~~~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l 100 (229)
T 3e6j_A 21 GTTVDCRSKRHASVPAGIPTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQL 100 (229)
T ss_dssp TTEEECTTSCCSSCCSCCCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred CCEeEccCCCcCccCCCCCCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCcC
Confidence 3455666666665555556677777777777776667778888888888888888876655544 556888888888887
Q ss_pred ccccCccCCCCCCccEEEccCCcccCCCccccccCCCCcEEEccCCcccCCCCccccCCCCCCeEEecCCccccC
Q 040206 151 QGSIPQTNAKGCNLTSLRLSGNHLEGPLPPSLINCVNLQFLDVGNNNLSGPIPECLGNSTRLSFLDVGNNSLSGP 225 (347)
Q Consensus 151 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~~~~~~~ 225 (347)
....+..+..+++|++|++++|.++ .+|..+..+++|+.|++++|.+.+..+..+..+++|+.|++.+|.+...
T Consensus 101 ~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~ 174 (229)
T 3e6j_A 101 TVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDCE 174 (229)
T ss_dssp CCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCTT
T ss_pred CccChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccCC
Confidence 7555566777888888888888887 5667778888888888888888766666777888888888888877643
No 112
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.73 E-value=3.7e-17 Score=130.73 Aligned_cols=150 Identities=17% Similarity=0.206 Sum_probs=101.1
Q ss_pred ccccEEECCCCccccccCccCCCCCCccEEEccCCcccCCCccccccCCCCcEEEccCCcccCCCCccccCCCCCCeEEe
Q 040206 138 STLETLDLGMNNFQGSIPQTNAKGCNLTSLRLSGNHLEGPLPPSLINCVNLQFLDVGNNNLSGPIPECLGNSTRLSFLDV 217 (347)
Q Consensus 138 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l 217 (347)
++|+.|++++|.+. ..+ .+..+++|++|++++|.+.. +..+..+++|++|++++|.+.+..+..+..+++|+.|++
T Consensus 44 ~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~~~--~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L 119 (197)
T 4ezg_A 44 NSLTYITLANINVT-DLT-GIEYAHNIKDLTINNIHATN--YNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDI 119 (197)
T ss_dssp HTCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCCCSC--CGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEEC
T ss_pred CCccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCCCCc--chhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEe
Confidence 45666666666554 333 45566677777777775542 235667777777777777777555667777777777877
Q ss_pred cCCccccCcCccc-cccCCcEEEcccCc-ccccCChhhhccccccCCCcCccCCCCCcEEEccCCccCCccchhhhhccC
Q 040206 218 GNNSLSGPIPECL-ANSTLEILDMRMNK-FSGSLPQNICKKLCFGPLPPSLVNCQYLEVLDVGNNQIDDTFLYWLDVLLQ 295 (347)
Q Consensus 218 ~~~~~~~~~~~~~-~~~~L~~L~L~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~ 295 (347)
++|.+++..+..+ ..++|++|++++|. +. .++ .+..+++|++|++++|.+.+.. .+..+++
T Consensus 120 s~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~--------------~~~-~l~~l~~L~~L~l~~n~i~~~~--~l~~l~~ 182 (197)
T 4ezg_A 120 SHSAHDDSILTKINTLPKVNSIDLSYNGAIT--------------DIM-PLKTLPELKSLNIQFDGVHDYR--GIEDFPK 182 (197)
T ss_dssp CSSBCBGGGHHHHTTCSSCCEEECCSCTBCC--------------CCG-GGGGCSSCCEEECTTBCCCCCT--TGGGCSS
T ss_pred cCCccCcHhHHHHhhCCCCCEEEccCCCCcc--------------ccH-hhcCCCCCCEEECCCCCCcChH--HhccCCC
Confidence 7777775444333 33678888888886 55 233 4677888999999999887643 5778889
Q ss_pred CCEEEcccceeec
Q 040206 296 LQVLILRSNRFWG 308 (347)
Q Consensus 296 L~~l~L~~n~~~~ 308 (347)
|+.|++++|++.+
T Consensus 183 L~~L~l~~N~i~~ 195 (197)
T 4ezg_A 183 LNQLYAFSQTIGG 195 (197)
T ss_dssp CCEEEECBC----
T ss_pred CCEEEeeCcccCC
Confidence 9999999988754
No 113
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.72 E-value=6.9e-17 Score=141.60 Aligned_cols=173 Identities=23% Similarity=0.155 Sum_probs=101.5
Q ss_pred ccEEEcCCCcCCCCCCCCCCCCcEEEccCCCCCccCCC----CCCCccEEEcccCcccccCCccccCCCCccEEEcccCc
Q 040206 51 LQFLILSQNVLTSIDHLPWKNLQYLTLDSNLLQGSLPD----LPPHMVQLLISNNSLTGEIPSSFCNLSSIQYLNLSNNS 126 (347)
Q Consensus 51 L~~L~l~~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~----~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~ 126 (347)
-+.++++++.++.++..-...++.|++++|.++..... .+++|++|++++|.+..+.+..|..+++|++|++++|.
T Consensus 20 ~~~l~c~~~~l~~iP~~~~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~ 99 (361)
T 2xot_A 20 SNILSCSKQQLPNVPQSLPSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNH 99 (361)
T ss_dssp TTEEECCSSCCSSCCSSCCTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred CCEEEeCCCCcCccCccCCCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCCc
Confidence 35677777777777665556677777777776654433 33566666666666665555566666666666666666
Q ss_pred ccccCCccc-CCccccEEECCCCccccccCccCCCCCCccEEEccCCcccCCCcccc---ccCCCCcEEEccCCcccCCC
Q 040206 127 LSGQIPQCL-GNSTLETLDLGMNNFQGSIPQTNAKGCNLTSLRLSGNHLEGPLPPSL---INCVNLQFLDVGNNNLSGPI 202 (347)
Q Consensus 127 ~~~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l---~~~~~L~~L~l~~n~~~~~~ 202 (347)
+....+..+ .+++|+.|++++|.+....+..+..+++|++|++++|.++...+..+ ..+++|+.|++++|.+....
T Consensus 100 l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~ 179 (361)
T 2xot_A 100 LHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLP 179 (361)
T ss_dssp CCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCCCC
T ss_pred CCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCccC
Confidence 665544433 34566666666666655555566666666666666666654333333 34566666666666665444
Q ss_pred CccccCCCC--CCeEEecCCccc
Q 040206 203 PECLGNSTR--LSFLDVGNNSLS 223 (347)
Q Consensus 203 ~~~l~~~~~--L~~L~l~~~~~~ 223 (347)
+..+..++. ++.|++.+|.+.
T Consensus 180 ~~~~~~l~~~~l~~l~l~~N~~~ 202 (361)
T 2xot_A 180 LTDLQKLPAWVKNGLYLHNNPLE 202 (361)
T ss_dssp HHHHHHSCHHHHTTEECCSSCEE
T ss_pred HHHhhhccHhhcceEEecCCCcc
Confidence 444555554 255666665554
No 114
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.70 E-value=2.3e-17 Score=138.02 Aligned_cols=168 Identities=22% Similarity=0.222 Sum_probs=92.8
Q ss_pred CCccEEEcccCcccccCCccccCCCCccEEEcccCcccccCCcccCCccccEEECCCCccccccCccCCCCCCccEEEcc
Q 040206 91 PHMVQLLISNNSLTGEIPSSFCNLSSIQYLNLSNNSLSGQIPQCLGNSTLETLDLGMNNFQGSIPQTNAKGCNLTSLRLS 170 (347)
Q Consensus 91 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~ 170 (347)
.+++.++++++.+.+.. .+..+++|+.|++++|.+.... ....+++|+.|++++|.+....+ +..+++|++|+++
T Consensus 19 ~~l~~l~l~~~~i~~~~--~~~~l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~L~ 93 (263)
T 1xeu_A 19 ANAVKQNLGKQSVTDLV--SQKELSGVQNFNGDNSNIQSLA-GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELSVN 93 (263)
T ss_dssp HHHHHHHHTCSCTTSEE--CHHHHTTCSEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEECC
T ss_pred HHHHHHHhcCCCccccc--chhhcCcCcEEECcCCCcccch-HHhhCCCCCEEECCCCccCCChh--hccCCCCCEEECC
Confidence 44555666666665332 4556677777777777666432 33345566666666666653322 5566666666666
Q ss_pred CCcccCCCccccccCCCCcEEEccCCcccCCCCccccCCCCCCeEEecCCccccCcCccccccCCcEEEcccCcccccCC
Q 040206 171 GNHLEGPLPPSLINCVNLQFLDVGNNNLSGPIPECLGNSTRLSFLDVGNNSLSGPIPECLANSTLEILDMRMNKFSGSLP 250 (347)
Q Consensus 171 ~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~ 250 (347)
+|.++.. +. +.. ++|+.|++++|.+.+. ..+..+++|+.|++++|.+++. +.....++|+.|++++|.+.+
T Consensus 94 ~N~l~~l-~~-~~~-~~L~~L~L~~N~l~~~--~~l~~l~~L~~L~Ls~N~i~~~-~~l~~l~~L~~L~L~~N~i~~--- 164 (263)
T 1xeu_A 94 RNRLKNL-NG-IPS-ACLSRLFLDNNELRDT--DSLIHLKNLEILSIRNNKLKSI-VMLGFLSKLEVLDLHGNEITN--- 164 (263)
T ss_dssp SSCCSCC-TT-CCC-SSCCEEECCSSCCSBS--GGGTTCTTCCEEECTTSCCCBC-GGGGGCTTCCEEECTTSCCCB---
T ss_pred CCccCCc-Cc-ccc-CcccEEEccCCccCCC--hhhcCcccccEEECCCCcCCCC-hHHccCCCCCEEECCCCcCcc---
Confidence 6666532 21 222 5666666666666532 2455666666666666665543 222233555555555555553
Q ss_pred hhhhccccccCCCcCccCCCCCcEEEccCCccCC
Q 040206 251 QNICKKLCFGPLPPSLVNCQYLEVLDVGNNQIDD 284 (347)
Q Consensus 251 ~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~i~~ 284 (347)
+ ..+..+++|+.|++++|.+..
T Consensus 165 -----------~-~~l~~l~~L~~L~l~~N~~~~ 186 (263)
T 1xeu_A 165 -----------T-GGLTRLKKVNWIDLTGQKCVN 186 (263)
T ss_dssp -----------C-TTSTTCCCCCEEEEEEEEEEC
T ss_pred -----------h-HHhccCCCCCEEeCCCCcccC
Confidence 1 234455555555555555544
No 115
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.70 E-value=8.8e-17 Score=128.52 Aligned_cols=153 Identities=16% Similarity=0.222 Sum_probs=90.4
Q ss_pred CCCCccEEEcccCcccccCCcccCCccccEEECCCCccccccCccCCCCCCccEEEccCCcccCCCccccccCCCCcEEE
Q 040206 113 NLSSIQYLNLSNNSLSGQIPQCLGNSTLETLDLGMNNFQGSIPQTNAKGCNLTSLRLSGNHLEGPLPPSLINCVNLQFLD 192 (347)
Q Consensus 113 ~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~ 192 (347)
.+++|+.|++++|.+.... ....+++|++|++++|.+. .+..+..+++|++|++++|.++...+..++.+++|+.|+
T Consensus 42 ~l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~l~~n~~~--~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ 118 (197)
T 4ezg_A 42 QMNSLTYITLANINVTDLT-GIEYAHNIKDLTINNIHAT--NYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLD 118 (197)
T ss_dssp HHHTCCEEEEESSCCSCCT-TGGGCTTCSEEEEESCCCS--CCGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEE
T ss_pred hcCCccEEeccCCCccChH-HHhcCCCCCEEEccCCCCC--cchhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEE
Confidence 3444555555555544222 3334445555555555432 223455566677777777666654555666677777777
Q ss_pred ccCCcccCCCCccccCCCCCCeEEecCCc-cccCcCccccccCCcEEEcccCcccccCChhhhccccccCCCcCccCCCC
Q 040206 193 VGNNNLSGPIPECLGNSTRLSFLDVGNNS-LSGPIPECLANSTLEILDMRMNKFSGSLPQNICKKLCFGPLPPSLVNCQY 271 (347)
Q Consensus 193 l~~n~~~~~~~~~l~~~~~L~~L~l~~~~-~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 271 (347)
+++|.+.+..+..+..+++|++|++++|. +.. .+.....++|+.|++++|.+.+ ++ .+..+++
T Consensus 119 Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~-~~~l~~l~~L~~L~l~~n~i~~--------------~~-~l~~l~~ 182 (197)
T 4ezg_A 119 ISHSAHDDSILTKINTLPKVNSIDLSYNGAITD-IMPLKTLPELKSLNIQFDGVHD--------------YR-GIEDFPK 182 (197)
T ss_dssp CCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCC-CGGGGGCSSCCEEECTTBCCCC--------------CT-TGGGCSS
T ss_pred ecCCccCcHhHHHHhhCCCCCEEEccCCCCccc-cHhhcCCCCCCEEECCCCCCcC--------------hH-HhccCCC
Confidence 77777765556666677777777777776 443 3334444677777777777763 33 4667788
Q ss_pred CcEEEccCCccCC
Q 040206 272 LEVLDVGNNQIDD 284 (347)
Q Consensus 272 L~~L~L~~n~i~~ 284 (347)
|++|++++|.+.+
T Consensus 183 L~~L~l~~N~i~~ 195 (197)
T 4ezg_A 183 LNQLYAFSQTIGG 195 (197)
T ss_dssp CCEEEECBC----
T ss_pred CCEEEeeCcccCC
Confidence 8888888887753
No 116
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.68 E-value=1.6e-16 Score=132.80 Aligned_cols=161 Identities=17% Similarity=0.197 Sum_probs=86.0
Q ss_pred EecCCCCCCCChhhhcCCCccEEeccCCcccccCChhhhhcCCCcccEEEcCCCcCCCCCC-CCCCCCcEEEccCCCCCc
Q 040206 6 QVKTCNISEFPDILRTQHQLEWLDLSKNQIRGRIPSWMWDIGVHTLQFLILSQNVLTSIDH-LPWKNLQYLTLDSNLLQG 84 (347)
Q Consensus 6 ~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~-~~~~~L~~L~l~~~~~~~ 84 (347)
+++++.+..++ .+..+++|+.|++++|.+. .++ .+.. +++|++|++++|.+++++. ..+++|++|++++|.+..
T Consensus 25 ~l~~~~i~~~~-~~~~l~~L~~L~l~~n~i~-~l~-~l~~--l~~L~~L~L~~N~i~~~~~l~~l~~L~~L~L~~N~l~~ 99 (263)
T 1xeu_A 25 NLGKQSVTDLV-SQKELSGVQNFNGDNSNIQ-SLA-GMQF--FTNLKELHLSHNQISDLSPLKDLTKLEELSVNRNRLKN 99 (263)
T ss_dssp HHTCSCTTSEE-CHHHHTTCSEEECTTSCCC-CCT-TGGG--CTTCCEEECCSSCCCCCGGGTTCSSCCEEECCSSCCSC
T ss_pred HhcCCCccccc-chhhcCcCcEEECcCCCcc-cch-HHhh--CCCCCEEECCCCccCCChhhccCCCCCEEECCCCccCC
Confidence 44455555444 3555666666666666555 333 2332 2566666666665555543 444555555555555543
Q ss_pred cCCCCCCCccEEEcccCcccccCCccccCCCCccEEEcccCcccccCCcccCCccccEEECCCCccccccCccCCCCCCc
Q 040206 85 SLPDLPPHMVQLLISNNSLTGEIPSSFCNLSSIQYLNLSNNSLSGQIPQCLGNSTLETLDLGMNNFQGSIPQTNAKGCNL 164 (347)
Q Consensus 85 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L 164 (347)
.... .. ++|+.|++++|.+... +....+++|+.|++++|.+.+. + .+..+++|
T Consensus 100 l~~~-----------------------~~-~~L~~L~L~~N~l~~~-~~l~~l~~L~~L~Ls~N~i~~~-~-~l~~l~~L 152 (263)
T 1xeu_A 100 LNGI-----------------------PS-ACLSRLFLDNNELRDT-DSLIHLKNLEILSIRNNKLKSI-V-MLGFLSKL 152 (263)
T ss_dssp CTTC-----------------------CC-SSCCEEECCSSCCSBS-GGGTTCTTCCEEECTTSCCCBC-G-GGGGCTTC
T ss_pred cCcc-----------------------cc-CcccEEEccCCccCCC-hhhcCcccccEEECCCCcCCCC-h-HHccCCCC
Confidence 2211 11 4555555555555432 2233444555555555555432 2 45556666
Q ss_pred cEEEccCCcccCCCccccccCCCCcEEEccCCcccC
Q 040206 165 TSLRLSGNHLEGPLPPSLINCVNLQFLDVGNNNLSG 200 (347)
Q Consensus 165 ~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~ 200 (347)
++|++++|.++.. ..+..+++|+.|++++|.+..
T Consensus 153 ~~L~L~~N~i~~~--~~l~~l~~L~~L~l~~N~~~~ 186 (263)
T 1xeu_A 153 EVLDLHGNEITNT--GGLTRLKKVNWIDLTGQKCVN 186 (263)
T ss_dssp CEEECTTSCCCBC--TTSTTCCCCCEEEEEEEEEEC
T ss_pred CEEECCCCcCcch--HHhccCCCCCEEeCCCCcccC
Confidence 6666666666544 456666777777777776653
No 117
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.63 E-value=3.7e-16 Score=135.21 Aligned_cols=262 Identities=13% Similarity=0.118 Sum_probs=158.3
Q ss_pred cCCCccEEeccCCcccccCChhhhhcCCCcccEEEcCCCcCC--CCCCCCCCCCcEEEccCCCCCccCCCC--------C
Q 040206 21 TQHQLEWLDLSKNQIRGRIPSWMWDIGVHTLQFLILSQNVLT--SIDHLPWKNLQYLTLDSNLLQGSLPDL--------P 90 (347)
Q Consensus 21 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~--~~~~~~~~~L~~L~l~~~~~~~~~~~~--------~ 90 (347)
.+++++.|.++++ +...-...+.. .+++|+.|++++|.+. ......++.++.+.+..+.+....... +
T Consensus 23 ~~~~l~~L~l~g~-i~~~~~~~l~~-~l~~L~~LdLs~n~i~~~~~~~~~~~~~~~~~~~~~~I~~~aF~~~~~~~~~g~ 100 (329)
T 3sb4_A 23 EANSITHLTLTGK-LNAEDFRHLRD-EFPSLKVLDISNAEIKMYSGKAGTYPNGKFYIYMANFVPAYAFSNVVNGVTKGK 100 (329)
T ss_dssp HHHHCSEEEEEEE-ECHHHHHHHHH-SCTTCCEEEEEEEEECCEEESSSSSGGGCCEEECTTEECTTTTEEEETTEEEEC
T ss_pred hhCceeEEEEecc-ccHHHHHHHHH-hhccCeEEecCcceeEEecCccccccccccccccccccCHHHhccccccccccc
Confidence 4567888888764 22121223333 2478888888888887 333344444555666666555555455 6
Q ss_pred CCccEEEcccCcccccCCccccCCCCccEEEcccCcccccCCccc-CCccccEEECCCCcc----ccccCccCCCCCCcc
Q 040206 91 PHMVQLLISNNSLTGEIPSSFCNLSSIQYLNLSNNSLSGQIPQCL-GNSTLETLDLGMNNF----QGSIPQTNAKGCNLT 165 (347)
Q Consensus 91 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~-~~~~L~~L~l~~~~~----~~~~~~~~~~~~~L~ 165 (347)
++|+.+++.+ .++.+...+|.++++|+.+++.+|.+....+..| ++..+..+....... .......+..+..|+
T Consensus 101 ~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L~ 179 (329)
T 3sb4_A 101 QTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPLE 179 (329)
T ss_dssp TTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCCE
T ss_pred CCCcEEECCc-cccchhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhccccccccccccccccc
Confidence 7788888877 6766666778888888888888877765555544 333455554443211 111112222233333
Q ss_pred --------------------------EEEccCCcccCCCcccc-ccCCCCcEEEccCCcccCCCCccccCCCCCCeEEec
Q 040206 166 --------------------------SLRLSGNHLEGPLPPSL-INCVNLQFLDVGNNNLSGPIPECLGNSTRLSFLDVG 218 (347)
Q Consensus 166 --------------------------~L~l~~~~~~~~~~~~l-~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~ 218 (347)
.+.+.+.-.. .....+ ..+++|+.+++++|.+......+|..+.+|+.+++.
T Consensus 180 ~~i~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~l~~-~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~ 258 (329)
T 3sb4_A 180 TTIQVGAMGKLEDEIMKAGLQPRDINFLTIEGKLDN-ADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLP 258 (329)
T ss_dssp EEEEECTTCCHHHHHHHTTCCGGGCSEEEEEECCCH-HHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCEEECC
T ss_pred eeEEecCCCcHHHHHhhcccCccccceEEEeeeecH-HHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCEEECC
Confidence 2222221100 000011 136788888888887776666778888888888887
Q ss_pred CCccccCcCccccc-cCCc-EEEcccCcccccCChhhhccccccCCCcCccCCCCCcEEEccCCccCCccchhhhhccCC
Q 040206 219 NNSLSGPIPECLAN-STLE-ILDMRMNKFSGSLPQNICKKLCFGPLPPSLVNCQYLEVLDVGNNQIDDTFLYWLDVLLQL 296 (347)
Q Consensus 219 ~~~~~~~~~~~~~~-~~L~-~L~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L 296 (347)
++ +.......+.. .+|+ .+++.+ .++.. -+.+|.+|++|+.+++++|.+..+....|.++++|
T Consensus 259 ~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I-------------~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L 323 (329)
T 3sb4_A 259 HN-LKTIGQRVFSNCGRLAGTLELPA-SVTAI-------------EFGAFMGCDNLRYVLATGDKITTLGDELFGNGVPS 323 (329)
T ss_dssp TT-CCEECTTTTTTCTTCCEEEEECT-TCCEE-------------CTTTTTTCTTEEEEEECSSCCCEECTTTTCTTCCC
T ss_pred cc-cceehHHHhhCChhccEEEEEcc-cceEE-------------chhhhhCCccCCEEEeCCCccCccchhhhcCCcch
Confidence 76 55555555444 5687 888877 44421 12467888888888888888887777788888888
Q ss_pred CEEEc
Q 040206 297 QVLIL 301 (347)
Q Consensus 297 ~~l~L 301 (347)
+.++.
T Consensus 324 ~~ly~ 328 (329)
T 3sb4_A 324 KLIYK 328 (329)
T ss_dssp CEEEC
T ss_pred hhhcc
Confidence 88764
No 118
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.63 E-value=1.7e-15 Score=117.87 Aligned_cols=133 Identities=21% Similarity=0.174 Sum_probs=93.4
Q ss_pred CCccEEEccCCccc-CCCccccccCCCCcEEEccCCcccCCCCccccCCCCCCeEEecCCccccCcCcccc-ccCCcEEE
Q 040206 162 CNLTSLRLSGNHLE-GPLPPSLINCVNLQFLDVGNNNLSGPIPECLGNSTRLSFLDVGNNSLSGPIPECLA-NSTLEILD 239 (347)
Q Consensus 162 ~~L~~L~l~~~~~~-~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~-~~~L~~L~ 239 (347)
+++++|++++|.++ ...+..+..+++|+.|++++|.+.+. ..+..+++|+.|++++|.+.+..+..+. .++|+.|+
T Consensus 24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 101 (168)
T 2ell_A 24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLN 101 (168)
T ss_dssp TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEE
T ss_pred ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEe
Confidence 56666677666665 34455556667777777777776643 5666777777777777777654554444 47777888
Q ss_pred cccCcccccCChhhhccccccCCCcCccCCCCCcEEEccCCccCCccc---hhhhhccCCCEEEcccceeec
Q 040206 240 MRMNKFSGSLPQNICKKLCFGPLPPSLVNCQYLEVLDVGNNQIDDTFL---YWLDVLLQLQVLILRSNRFWG 308 (347)
Q Consensus 240 L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~i~~~~~---~~~~~l~~L~~l~L~~n~~~~ 308 (347)
+++|.+++. + .+..+..+++|++|++++|.+++.++ ..+..+++|+.|++++|+...
T Consensus 102 Ls~N~l~~~-~-----------~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~~ 161 (168)
T 2ell_A 102 LSGNKLKDI-S-----------TLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQE 161 (168)
T ss_dssp CBSSSCCSS-G-----------GGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSCB
T ss_pred ccCCccCcc-h-----------hHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChhh
Confidence 887777742 0 01356778899999999999887665 468889999999999988765
No 119
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.63 E-value=1.2e-18 Score=160.91 Aligned_cols=200 Identities=21% Similarity=0.156 Sum_probs=130.5
Q ss_pred hcCCCccEEeccCCcccccCChhhhhcCCCcccEEEcCCCc-------------CCCCCC---CCCCCCcEEE-ccCCCC
Q 040206 20 RTQHQLEWLDLSKNQIRGRIPSWMWDIGVHTLQFLILSQNV-------------LTSIDH---LPWKNLQYLT-LDSNLL 82 (347)
Q Consensus 20 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~-------------l~~~~~---~~~~~L~~L~-l~~~~~ 82 (347)
..+++|+.|++++|.+. .+|..+..+ ++|+.|+++++. .....+ ..+++|+.|+ ++.+.+
T Consensus 346 ~~~~~L~~L~Ls~n~L~-~Lp~~i~~l--~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~ 422 (567)
T 1dce_A 346 ATDEQLFRCELSVEKST-VLQSELESC--KELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYL 422 (567)
T ss_dssp STTTTSSSCCCCHHHHH-HHHHHHHHH--HHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHH
T ss_pred ccCccceeccCChhhHH-hhHHHHHHH--HHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhccc
Confidence 56788888888888886 778777765 888888876653 111111 2334455554 333222
Q ss_pred CccCCCCCCCccEEEcccCcccccCCccccCCCCccEEEcccCcccccCCcccCCccccEEECCCCccccccCccCCCCC
Q 040206 83 QGSLPDLPPHMVQLLISNNSLTGEIPSSFCNLSSIQYLNLSNNSLSGQIPQCLGNSTLETLDLGMNNFQGSIPQTNAKGC 162 (347)
Q Consensus 83 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~ 162 (347)
.+|+.+.+.+|.+....+ ..|+.|++++|.++..+ .+..+++|+.|++++|.+. .+|..+..++
T Consensus 423 --------~~L~~l~l~~n~i~~l~~------~~L~~L~Ls~n~l~~lp-~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~ 486 (567)
T 1dce_A 423 --------DDLRSKFLLENSVLKMEY------ADVRVLHLAHKDLTVLC-HLEQLLLVTHLDLSHNRLR-ALPPALAALR 486 (567)
T ss_dssp --------HHHHHHHHHHHHHHHHHH------TTCSEEECTTSCCSSCC-CGGGGTTCCEEECCSSCCC-CCCGGGGGCT
T ss_pred --------chhhhhhhhcccccccCc------cCceEEEecCCCCCCCc-CccccccCcEeecCccccc-ccchhhhcCC
Confidence 234444445554442211 24777777777777543 3445667888888888776 6677777888
Q ss_pred CccEEEccCCcccCCCccccccCCCCcEEEccCCcccCCC-CccccCCCCCCeEEecCCccccCcCcccc----ccCCcE
Q 040206 163 NLTSLRLSGNHLEGPLPPSLINCVNLQFLDVGNNNLSGPI-PECLGNSTRLSFLDVGNNSLSGPIPECLA----NSTLEI 237 (347)
Q Consensus 163 ~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~-~~~l~~~~~L~~L~l~~~~~~~~~~~~~~----~~~L~~ 237 (347)
+|+.|++++|.++. +| .++.+++|+.|++++|.+.+.. |..+..+++|+.|++++|.+++..+.... .++|+.
T Consensus 487 ~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~ 564 (567)
T 1dce_A 487 CLEVLQASDNALEN-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSS 564 (567)
T ss_dssp TCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSE
T ss_pred CCCEEECCCCCCCC-Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCc
Confidence 88888888888774 45 7778888888888888887655 77788888888888888887765443221 367777
Q ss_pred EEc
Q 040206 238 LDM 240 (347)
Q Consensus 238 L~L 240 (347)
|++
T Consensus 565 L~l 567 (567)
T 1dce_A 565 ILT 567 (567)
T ss_dssp EEC
T ss_pred cCC
Confidence 753
No 120
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.62 E-value=1.4e-16 Score=151.62 Aligned_cols=151 Identities=26% Similarity=0.279 Sum_probs=110.9
Q ss_pred EcccCcccccCCccccCCCCccEEEcccCcccccCCcccCCccccEEECCCCccccccCccCCCCCCccEEEccCCcccC
Q 040206 97 LISNNSLTGEIPSSFCNLSSIQYLNLSNNSLSGQIPQCLGNSTLETLDLGMNNFQGSIPQTNAKGCNLTSLRLSGNHLEG 176 (347)
Q Consensus 97 ~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 176 (347)
++..|.+. ..+..+..++.|+.|++++|.+..+....+.+++|+.|++++|.+. .+|..+..+++|++|++++|.++
T Consensus 207 ~~~~n~~~-~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~- 283 (727)
T 4b8c_D 207 DDIENRMV-MPKDSKYDDQLWHALDLSNLQIFNISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT- 283 (727)
T ss_dssp ----------------CCCCCCEEECTTSCCSCCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-
T ss_pred ccccccee-cChhhhccCCCCcEEECCCCCCCCCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-
Confidence 34444444 5566788888999999999988866666677788999999999887 77888888999999999999988
Q ss_pred CCccccccCCCCcEEEccCCcccCCCCccccCCCCCCeEEecCCccccCcCccccc--cCCcEEEcccCcccccCCh
Q 040206 177 PLPPSLINCVNLQFLDVGNNNLSGPIPECLGNSTRLSFLDVGNNSLSGPIPECLAN--STLEILDMRMNKFSGSLPQ 251 (347)
Q Consensus 177 ~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~--~~L~~L~L~~~~~~~~~~~ 251 (347)
.+|..++.+++|++|++++|.+. .+|..+..+++|+.|++++|.+++..+..+.. .....+++++|.+++.+|.
T Consensus 284 ~lp~~~~~l~~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p~ 359 (727)
T 4b8c_D 284 SLPAELGSCFQLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLPH 359 (727)
T ss_dssp SCCSSGGGGTTCSEEECCSSCCC-CCCSSTTSCTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
T ss_pred ccChhhcCCCCCCEEECCCCCCC-ccChhhhcCCCccEEeCCCCccCCCChHHHhhcchhhhHHhhccCcccCcCcc
Confidence 66888899999999999999887 56777889999999999999988766655543 2223467888888865444
No 121
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.60 E-value=3.4e-15 Score=113.64 Aligned_cols=128 Identities=22% Similarity=0.195 Sum_probs=82.0
Q ss_pred CCccEEEccCCccc-CCCccccccCCCCcEEEccCCcccCCCCccccCCCCCCeEEecCCccccCcCcccc-ccCCcEEE
Q 040206 162 CNLTSLRLSGNHLE-GPLPPSLINCVNLQFLDVGNNNLSGPIPECLGNSTRLSFLDVGNNSLSGPIPECLA-NSTLEILD 239 (347)
Q Consensus 162 ~~L~~L~l~~~~~~-~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~-~~~L~~L~ 239 (347)
++++.|++++|.++ ...+..+..+++|+.|++++|.+.+. ..+..+++|+.|++++|.+++..+..+. .++|+.|+
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ 94 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLN 94 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEE
T ss_pred ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEE
Confidence 45566666666555 34444555666666666666666543 4556666666666666666654444333 46677777
Q ss_pred cccCcccccCChhhhccccccCCCcCccCCCCCcEEEccCCccCCccc---hhhhhccCCCEEEccc
Q 040206 240 MRMNKFSGSLPQNICKKLCFGPLPPSLVNCQYLEVLDVGNNQIDDTFL---YWLDVLLQLQVLILRS 303 (347)
Q Consensus 240 L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~i~~~~~---~~~~~l~~L~~l~L~~ 303 (347)
+++|.+++.. .+..+..+++|++|++++|.+++..+ ..+..+++|+.|++++
T Consensus 95 ls~N~i~~~~------------~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~d 149 (149)
T 2je0_A 95 LSGNKIKDLS------------TIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGYD 149 (149)
T ss_dssp CTTSCCCSHH------------HHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred CCCCcCCChH------------HHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCCC
Confidence 7777766310 11356778888899999988877655 5678888999888863
No 122
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.60 E-value=8.3e-15 Score=116.43 Aligned_cols=128 Identities=21% Similarity=0.273 Sum_probs=74.6
Q ss_pred cEEECCCCccccccCccCCCCCCccEEEccCCcccCCCcc-ccccCCCCcEEEccCCcccCCCCccccCCCCCCeEEecC
Q 040206 141 ETLDLGMNNFQGSIPQTNAKGCNLTSLRLSGNHLEGPLPP-SLINCVNLQFLDVGNNNLSGPIPECLGNSTRLSFLDVGN 219 (347)
Q Consensus 141 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~-~l~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~ 219 (347)
+.++++++.+. .+|..+. .++++|++++|.++...+. .++.+++|++|++++|.+.+..+..+..+++|+.|++++
T Consensus 11 ~~l~~s~~~l~-~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~ 87 (192)
T 1w8a_A 11 TTVDCTGRGLK-EIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE 87 (192)
T ss_dssp TEEECTTSCCS-SCCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred CEEEcCCCCcC-cCccCCC--CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCC
Confidence 56677777665 4444332 2677777777776644432 366677777777777777666566666666777777766
Q ss_pred CccccCcCcccc-ccCCcEEEcccCcccccCChhhhccccccCCCcCccCCCCCcEEEccCCccCC
Q 040206 220 NSLSGPIPECLA-NSTLEILDMRMNKFSGSLPQNICKKLCFGPLPPSLVNCQYLEVLDVGNNQIDD 284 (347)
Q Consensus 220 ~~~~~~~~~~~~-~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~i~~ 284 (347)
|.+++..+..+. .++|+.|++++|.+++. .|..+..+++|++|++++|.+..
T Consensus 88 N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~-------------~~~~~~~l~~L~~L~L~~N~l~c 140 (192)
T 1w8a_A 88 NKIKEISNKMFLGLHQLKTLNLYDNQISCV-------------MPGSFEHLNSLTSLNLASNPFNC 140 (192)
T ss_dssp CCCCEECSSSSTTCTTCCEEECCSSCCCEE-------------CTTSSTTCTTCCEEECTTCCBCC
T ss_pred CcCCccCHHHhcCCCCCCEEECCCCcCCee-------------CHHHhhcCCCCCEEEeCCCCccC
Confidence 666654443332 25555555555555542 22334455555555555555543
No 123
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.58 E-value=1.5e-17 Score=153.57 Aligned_cols=203 Identities=18% Similarity=0.117 Sum_probs=144.6
Q ss_pred CCCcccEEEcCCCcCCCCCC--CCCCCCcEEEccCCCCCccCCCCCCCccEEEcccCcccccCCccccCCCCccEEE-cc
Q 040206 47 GVHTLQFLILSQNVLTSIDH--LPWKNLQYLTLDSNLLQGSLPDLPPHMVQLLISNNSLTGEIPSSFCNLSSIQYLN-LS 123 (347)
Q Consensus 47 ~~~~L~~L~l~~~~l~~~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~-l~ 123 (347)
.++.|+.|++++|.++.++. ..+++|+.|+++++......+ .. +..+......+..++.+++|+.|+ ++
T Consensus 347 ~~~~L~~L~Ls~n~L~~Lp~~i~~l~~L~~L~l~~n~~l~~l~---~l-----l~~~~~~~~~~~~l~~l~~L~~L~~l~ 418 (567)
T 1dce_A 347 TDEQLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTII---LL-----MRALDPLLYEKETLQYFSTLKAVDPMR 418 (567)
T ss_dssp TTTTSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHH---HH-----HHHHCTGGGHHHHHHHHHHHHHHCGGG
T ss_pred cCccceeccCChhhHHhhHHHHHHHHHHHHhccccchhhhhHH---HH-----HHhcccccCCHHHHHHHHhcccCcchh
Confidence 34889999999999887776 667889999886553110000 00 011112223445555556666655 33
Q ss_pred cC-------------cccccCCcccCCccccEEECCCCccccccCccCCCCCCccEEEccCCcccCCCccccccCCCCcE
Q 040206 124 NN-------------SLSGQIPQCLGNSTLETLDLGMNNFQGSIPQTNAKGCNLTSLRLSGNHLEGPLPPSLINCVNLQF 190 (347)
Q Consensus 124 ~~-------------~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~ 190 (347)
.+ .+.... ...|+.|++++|.+.. +|. +..+++|+.|++++|.++ .+|..++.+++|+.
T Consensus 419 ~n~~~~L~~l~l~~n~i~~l~-----~~~L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~ 490 (567)
T 1dce_A 419 AAYLDDLRSKFLLENSVLKME-----YADVRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRLR-ALPPALAALRCLEV 490 (567)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH-----HTTCSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCE
T ss_pred hcccchhhhhhhhcccccccC-----ccCceEEEecCCCCCC-CcC-ccccccCcEeecCccccc-ccchhhhcCCCCCE
Confidence 33 333211 1258999999999884 565 888999999999999998 77889999999999
Q ss_pred EEccCCcccCCCCccccCCCCCCeEEecCCccccCc-Ccc-ccccCCcEEEcccCcccccCChhhhccccccCCCcCccC
Q 040206 191 LDVGNNNLSGPIPECLGNSTRLSFLDVGNNSLSGPI-PEC-LANSTLEILDMRMNKFSGSLPQNICKKLCFGPLPPSLVN 268 (347)
Q Consensus 191 L~l~~n~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~-~~~-~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 268 (347)
|++++|.+.+ +| .+..+++|+.|++++|.+++.. +.. ...++|+.|++++|.+++..+. ....+..
T Consensus 491 L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~----------~~~l~~~ 558 (567)
T 1dce_A 491 LQASDNALEN-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGI----------QERLAEM 558 (567)
T ss_dssp EECCSSCCCC-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSC----------TTHHHHH
T ss_pred EECCCCCCCC-Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccH----------HHHHHHH
Confidence 9999999985 55 8899999999999999999774 444 4458999999999999964332 1223445
Q ss_pred CCCCcEEEc
Q 040206 269 CQYLEVLDV 277 (347)
Q Consensus 269 ~~~L~~L~L 277 (347)
+++|+.|++
T Consensus 559 lp~L~~L~l 567 (567)
T 1dce_A 559 LPSVSSILT 567 (567)
T ss_dssp CTTCSEEEC
T ss_pred CcccCccCC
Confidence 889998875
No 124
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.56 E-value=1.1e-14 Score=113.21 Aligned_cols=135 Identities=19% Similarity=0.126 Sum_probs=82.4
Q ss_pred ccccEEECCCCccc-cccCccCCCCCCccEEEccCCcccCCCccccccCCCCcEEEccCCcccCCCCccccCCCCCCeEE
Q 040206 138 STLETLDLGMNNFQ-GSIPQTNAKGCNLTSLRLSGNHLEGPLPPSLINCVNLQFLDVGNNNLSGPIPECLGNSTRLSFLD 216 (347)
Q Consensus 138 ~~L~~L~l~~~~~~-~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~ 216 (347)
++|+.|++++|.+. ...|..+..+++|++|++++|.++.. ..+..+++|+.|++++|.+.+..|..+..+++|+.|+
T Consensus 24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 101 (168)
T 2ell_A 24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLN 101 (168)
T ss_dssp TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEE
T ss_pred ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEe
Confidence 35566666666554 34455555666666666666666543 4566667777777777776654555566677777777
Q ss_pred ecCCccccCc--CccccccCCcEEEcccCcccccCChhhhccccccCCCcCccCCCCCcEEEccCCccCC
Q 040206 217 VGNNSLSGPI--PECLANSTLEILDMRMNKFSGSLPQNICKKLCFGPLPPSLVNCQYLEVLDVGNNQIDD 284 (347)
Q Consensus 217 l~~~~~~~~~--~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~i~~ 284 (347)
+++|.+++.. ......++|+.|++++|.+++..+.. ...+..+++|++|++++|.+..
T Consensus 102 Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~----------~~~~~~l~~L~~L~l~~n~~~~ 161 (168)
T 2ell_A 102 LSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYR----------ESVFKLLPQLTYLDGYDREDQE 161 (168)
T ss_dssp CBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHH----------HHHHTTCSSCCEETTEETTSCB
T ss_pred ccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHH----------HHHHHhCccCcEecCCCCChhh
Confidence 7777666533 22333367777777777776321100 0146677788888888887654
No 125
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.56 E-value=4.9e-13 Score=118.21 Aligned_cols=260 Identities=15% Similarity=0.168 Sum_probs=145.0
Q ss_pred cCCCccEEeccCCcccccCChhhhhcCCCcccEEEcCCCcCCCCCCCCC--CCCcEEEccCCCCCc---cCCCCCCCccE
Q 040206 21 TQHQLEWLDLSKNQIRGRIPSWMWDIGVHTLQFLILSQNVLTSIDHLPW--KNLQYLTLDSNLLQG---SLPDLPPHMVQ 95 (347)
Q Consensus 21 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~--~~L~~L~l~~~~~~~---~~~~~~~~L~~ 95 (347)
.+..++.+.+.+ .++ .++...+. + .+|+.+.+..+ ++.++...| .+|+.+.+.. .+.. .....+++|+.
T Consensus 111 ~~~~l~~i~ip~-~i~-~I~~~aF~-~-~~L~~i~l~~~-i~~I~~~aF~~~~L~~i~lp~-~l~~I~~~aF~~c~~L~~ 184 (401)
T 4fdw_A 111 ILKGYNEIILPN-SVK-SIPKDAFR-N-SQIAKVVLNEG-LKSIGDMAFFNSTVQEIVFPS-TLEQLKEDIFYYCYNLKK 184 (401)
T ss_dssp ECSSCSEEECCT-TCC-EECTTTTT-T-CCCSEEECCTT-CCEECTTTTTTCCCCEEECCT-TCCEECSSTTTTCTTCCE
T ss_pred ecCCccEEEECC-ccC-EehHhhcc-c-CCccEEEeCCC-ccEECHHhcCCCCceEEEeCC-CccEehHHHhhCcccCCe
Confidence 345555555533 333 33333333 2 34666665544 444444222 2455565554 2222 22233356666
Q ss_pred EEcccCcccccCCccccCCCCccEEEcccCcccccCCccc-CCccccEEECCCCccccccCccCCCCCCccEEEccCCcc
Q 040206 96 LLISNNSLTGEIPSSFCNLSSIQYLNLSNNSLSGQIPQCL-GNSTLETLDLGMNNFQGSIPQTNAKGCNLTSLRLSGNHL 174 (347)
Q Consensus 96 L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 174 (347)
+++.+|.+..+...+|. ..+|+.+.+..+ +..+....| ++.+|+.+++..+ +.......|.. ++|+.+.+.. .+
T Consensus 185 l~l~~n~l~~I~~~aF~-~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~lp~-~i 259 (401)
T 4fdw_A 185 ADLSKTKITKLPASTFV-YAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITTVKLPN-GV 259 (401)
T ss_dssp EECTTSCCSEECTTTTT-TCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCSEEEEET-TC
T ss_pred eecCCCcceEechhhEe-ecccCEEEeCCc-hheehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCccEEEeCC-Cc
Confidence 66666666644444554 466777776643 443444434 4456777776654 33344444544 5677777733 34
Q ss_pred cCCCccccccCCCCcEEEccCCccc-----CCCCccccCCCCCCeEEecCCccccCcCccccc-cCCcEEEcccCccccc
Q 040206 175 EGPLPPSLINCVNLQFLDVGNNNLS-----GPIPECLGNSTRLSFLDVGNNSLSGPIPECLAN-STLEILDMRMNKFSGS 248 (347)
Q Consensus 175 ~~~~~~~l~~~~~L~~L~l~~n~~~-----~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~-~~L~~L~L~~~~~~~~ 248 (347)
+.....+|..+++|+.+++.++.+. .....+|..|++|+.+.+.+ .+.......+.. .+|+.+.+..+ ++..
T Consensus 260 ~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~-~i~~I~~~aF~~c~~L~~l~lp~~-l~~I 337 (401)
T 4fdw_A 260 TNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE-SIRILGQGLLGGNRKVTQLTIPAN-VTQI 337 (401)
T ss_dssp CEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT-TCCEECTTTTTTCCSCCEEEECTT-CCEE
T ss_pred cEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC-ceEEEhhhhhcCCCCccEEEECcc-ccEE
Confidence 4345566777777777777665443 24455677777777777763 354444444444 67777777544 3311
Q ss_pred CChhhhccccccCCCcCccCCCCCcEEEccCCccCCccchhhhhcc-CCCEEEcccceee
Q 040206 249 LPQNICKKLCFGPLPPSLVNCQYLEVLDVGNNQIDDTFLYWLDVLL-QLQVLILRSNRFW 307 (347)
Q Consensus 249 ~~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~-~L~~l~L~~n~~~ 307 (347)
-..+|.+| +|+.+++.+|.........|..++ .+..|.+-.+.+.
T Consensus 338 -------------~~~aF~~~-~L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~vp~~~~~ 383 (401)
T 4fdw_A 338 -------------NFSAFNNT-GIKEVKVEGTTPPQVFEKVWYGFPDDITVIRVPAESVE 383 (401)
T ss_dssp -------------CTTSSSSS-CCCEEEECCSSCCBCCCSSCCCSCTTCCEEEECGGGHH
T ss_pred -------------cHHhCCCC-CCCEEEEcCCCCcccccccccCCCCCccEEEeCHHHHH
Confidence 12367778 888888888877766666666664 6778887766543
No 126
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.56 E-value=3.3e-15 Score=142.10 Aligned_cols=155 Identities=22% Similarity=0.181 Sum_probs=106.8
Q ss_pred CCCccccccCccCCCCCCccEEEccCCcccCCCccccccCCCCcEEEccCCcccCCCCccccCCCCCCeEEecCCccccC
Q 040206 146 GMNNFQGSIPQTNAKGCNLTSLRLSGNHLEGPLPPSLINCVNLQFLDVGNNNLSGPIPECLGNSTRLSFLDVGNNSLSGP 225 (347)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~~~~~~~ 225 (347)
..+.+. ..+..+..++.|+.|++++|.+. .++..+..+++|+.|++++|.+. .+|..+..+++|+.|++++|.++..
T Consensus 209 ~~n~~~-~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~l 285 (727)
T 4b8c_D 209 IENRMV-MPKDSKYDDQLWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLTSL 285 (727)
T ss_dssp --------------CCCCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCSSC
T ss_pred ccccee-cChhhhccCCCCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCCcc
Confidence 334433 45667778888888999888887 55666678888999999998888 6778888888999999999988844
Q ss_pred cCccccccCCcEEEcccCcccccCChhhhccccccCCCcCccCCCCCcEEEccCCccCCccchhhhhccC-CCEEEcccc
Q 040206 226 IPECLANSTLEILDMRMNKFSGSLPQNICKKLCFGPLPPSLVNCQYLEVLDVGNNQIDDTFLYWLDVLLQ-LQVLILRSN 304 (347)
Q Consensus 226 ~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~-L~~l~L~~n 304 (347)
.......++|++|+|++|.++ .+|..++.+++|+.|+|++|.+++.++..+..+.. +..++|++|
T Consensus 286 p~~~~~l~~L~~L~L~~N~l~--------------~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N 351 (727)
T 4b8c_D 286 PAELGSCFQLKYFYFFDNMVT--------------TLPWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDN 351 (727)
T ss_dssp CSSGGGGTTCSEEECCSSCCC--------------CCCSSTTSCTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHC
T ss_pred ChhhcCCCCCCEEECCCCCCC--------------ccChhhhcCCCccEEeCCCCccCCCChHHHhhcchhhhHHhhccC
Confidence 334444588999999998887 46667888899999999999998877776654322 224677777
Q ss_pred eeecccCCccccc
Q 040206 305 RFWGPIGKLRSRW 317 (347)
Q Consensus 305 ~~~~~~~~~~~~~ 317 (347)
.+++.+|..+..+
T Consensus 352 ~l~~~~p~~l~~l 364 (727)
T 4b8c_D 352 RPEIPLPHERRFI 364 (727)
T ss_dssp CCCCCCCCC----
T ss_pred cccCcCcccccee
Confidence 7777777654433
No 127
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.55 E-value=6.4e-14 Score=111.27 Aligned_cols=130 Identities=22% Similarity=0.281 Sum_probs=72.0
Q ss_pred cEEECCCCccccccCccCCCCCCccEEEccCCcccCCCccccccCCCCcEEEccCCcccCCCCccccCCCCCCeEEecCC
Q 040206 141 ETLDLGMNNFQGSIPQTNAKGCNLTSLRLSGNHLEGPLPPSLINCVNLQFLDVGNNNLSGPIPECLGNSTRLSFLDVGNN 220 (347)
Q Consensus 141 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~~ 220 (347)
+.++++++.+. .+|..+ .+++++|++++|.++ .++..+..+++|+.|++++|.+.+..+..+..+++
T Consensus 13 ~~l~~~~~~l~-~ip~~~--~~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~--------- 79 (193)
T 2wfh_A 13 TVVRCSNKGLK-VLPKGI--PRDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQ--------- 79 (193)
T ss_dssp TEEECTTSCCS-SCCSCC--CTTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTT---------
T ss_pred CEEEcCCCCCC-cCCCCC--CCCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCC---------
Confidence 34555555554 333322 134555555555554 33344555555555555555555444444444444
Q ss_pred ccccCcCccccccCCcEEEcccCcccccCChhhhccccccCCCcCccCCCCCcEEEccCCccCCccchhhhhccCCCEEE
Q 040206 221 SLSGPIPECLANSTLEILDMRMNKFSGSLPQNICKKLCFGPLPPSLVNCQYLEVLDVGNNQIDDTFLYWLDVLLQLQVLI 300 (347)
Q Consensus 221 ~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~l~ 300 (347)
|+.|+|++|.+++. .+..|..+++|++|+|++|.++...+..+..+++|+.|+
T Consensus 80 --------------L~~L~Ls~N~l~~i-------------~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~ 132 (193)
T 2wfh_A 80 --------------LLTLILSYNRLRCI-------------PPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLA 132 (193)
T ss_dssp --------------CCEEECCSSCCCBC-------------CTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEE
T ss_pred --------------CCEEECCCCccCEe-------------CHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEE
Confidence 44555555555432 122456667777777777777766666667777777777
Q ss_pred cccceeeccc
Q 040206 301 LRSNRFWGPI 310 (347)
Q Consensus 301 L~~n~~~~~~ 310 (347)
+++|++....
T Consensus 133 L~~N~~~C~c 142 (193)
T 2wfh_A 133 IGANPLYCDC 142 (193)
T ss_dssp CCSSCEECSG
T ss_pred eCCCCeecCC
Confidence 7777776543
No 128
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.55 E-value=5e-14 Score=110.45 Aligned_cols=113 Identities=19% Similarity=0.161 Sum_probs=71.8
Q ss_pred CCCcEEEccCCcccCCCCccccCCCCCCeEEecCCccccCcCccc-cccCCcEEEcccCcccccCChhhhccccccCCCc
Q 040206 186 VNLQFLDVGNNNLSGPIPECLGNSTRLSFLDVGNNSLSGPIPECL-ANSTLEILDMRMNKFSGSLPQNICKKLCFGPLPP 264 (347)
Q Consensus 186 ~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~-~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~l~~ 264 (347)
++|+.|++++|.+.+..+..+..+++|+.|++++|.+++..+..+ ..++|+.|++++|.+++. .+.
T Consensus 28 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~-------------~~~ 94 (177)
T 2o6r_A 28 SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSL-------------PNG 94 (177)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCC-------------CTT
T ss_pred CCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCCcccc-------------CHH
Confidence 455666666665554444445555666666666666554443332 235666666666666632 122
Q ss_pred CccCCCCCcEEEccCCccCCccchhhhhccCCCEEEcccceeecccC
Q 040206 265 SLVNCQYLEVLDVGNNQIDDTFLYWLDVLLQLQVLILRSNRFWGPIG 311 (347)
Q Consensus 265 ~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~l~L~~n~~~~~~~ 311 (347)
.+..+++|++|++++|.+++.++..+..+++|+.|++++|++.+..+
T Consensus 95 ~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 141 (177)
T 2o6r_A 95 VFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 141 (177)
T ss_dssp TTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred HhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeeccCc
Confidence 45677788888888888877666666778888888888888877655
No 129
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.54 E-value=3.4e-14 Score=122.82 Aligned_cols=255 Identities=13% Similarity=0.052 Sum_probs=150.4
Q ss_pred ceEEEecCCCCCCCChhhhc-CCCccEEeccCCccc--ccCChhhhhcCCCcccEEEcCCCcCCCCCCCC--------CC
Q 040206 2 TIKTQVKTCNISEFPDILRT-QHQLEWLDLSKNQIR--GRIPSWMWDIGVHTLQFLILSQNVLTSIDHLP--------WK 70 (347)
Q Consensus 2 l~~l~l~~~~~~~~~~~~~~-~~~L~~L~l~~~~~~--~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~--------~~ 70 (347)
+++|.++|+--..--..+.. +++|+.|++++|++. ......+ +.++.+.+..+.+..-.... ++
T Consensus 27 l~~L~l~g~i~~~~~~~l~~~l~~L~~LdLs~n~i~~~~~~~~~~-----~~~~~~~~~~~~I~~~aF~~~~~~~~~g~~ 101 (329)
T 3sb4_A 27 ITHLTLTGKLNAEDFRHLRDEFPSLKVLDISNAEIKMYSGKAGTY-----PNGKFYIYMANFVPAYAFSNVVNGVTKGKQ 101 (329)
T ss_dssp CSEEEEEEEECHHHHHHHHHSCTTCCEEEEEEEEECCEEESSSSS-----GGGCCEEECTTEECTTTTEEEETTEEEECT
T ss_pred eeEEEEeccccHHHHHHHHHhhccCeEEecCcceeEEecCccccc-----cccccccccccccCHHHhcccccccccccC
Confidence 56777776421111123444 788999999999887 1111111 22334444444333333333 56
Q ss_pred CCcEEEccCCCCCccCC---CCCCCccEEEcccCcccccCCccccCCCCccEEEcccCcc----cccCCc-ccCCcc---
Q 040206 71 NLQYLTLDSNLLQGSLP---DLPPHMVQLLISNNSLTGEIPSSFCNLSSIQYLNLSNNSL----SGQIPQ-CLGNST--- 139 (347)
Q Consensus 71 ~L~~L~l~~~~~~~~~~---~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~----~~~~~~-~~~~~~--- 139 (347)
+|+.+++.+ .+..... ..+++|+.+++.+|.+..+.+.+|.++.++..+....... ...... +..+..
T Consensus 102 ~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L~~ 180 (329)
T 3sb4_A 102 TLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPLET 180 (329)
T ss_dssp TCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCCEE
T ss_pred CCcEEECCc-cccchhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhccccccccccccccccce
Confidence 666666665 4443322 2235666666666666555556666666565555443211 000111 112222
Q ss_pred -----------------------ccEEECCCCccccccCccCCCCCCccEEEccCCcccCCCccccccCCCCcEEEccCC
Q 040206 140 -----------------------LETLDLGMNNFQGSIPQTNAKGCNLTSLRLSGNHLEGPLPPSLINCVNLQFLDVGNN 196 (347)
Q Consensus 140 -----------------------L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n 196 (347)
++.+.+.+.-...........+++|+++++++|.++.....+|..+++|+.+++.+|
T Consensus 181 ~i~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n 260 (329)
T 3sb4_A 181 TIQVGAMGKLEDEIMKAGLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN 260 (329)
T ss_dssp EEEECTTCCHHHHHHHTTCCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT
T ss_pred eEEecCCCcHHHHHhhcccCccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc
Confidence 233333222110000000112678999999998888777788999999999999987
Q ss_pred cccCCCCccccCCCCCC-eEEecCCccccCcCccccc-cCCcEEEcccCcccccCChhhhccccccCCCcCccCCCCCcE
Q 040206 197 NLSGPIPECLGNSTRLS-FLDVGNNSLSGPIPECLAN-STLEILDMRMNKFSGSLPQNICKKLCFGPLPPSLVNCQYLEV 274 (347)
Q Consensus 197 ~~~~~~~~~l~~~~~L~-~L~l~~~~~~~~~~~~~~~-~~L~~L~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~ 274 (347)
+......+|..+.+|+ .+.+.+ .++......+.. ++|+.++++++.+.... +.+|.+|++|+.
T Consensus 261 -i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~-------------~~aF~~~~~L~~ 325 (329)
T 3sb4_A 261 -LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKITTLG-------------DELFGNGVPSKL 325 (329)
T ss_dssp -CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSSCCCEEC-------------TTTTCTTCCCCE
T ss_pred -cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEEeCCCccCccc-------------hhhhcCCcchhh
Confidence 6656778899999999 999987 666555555554 78999999988888431 237889999999
Q ss_pred EEc
Q 040206 275 LDV 277 (347)
Q Consensus 275 L~L 277 (347)
++.
T Consensus 326 ly~ 328 (329)
T 3sb4_A 326 IYK 328 (329)
T ss_dssp EEC
T ss_pred hcc
Confidence 874
No 130
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.54 E-value=3e-14 Score=113.18 Aligned_cols=86 Identities=20% Similarity=0.328 Sum_probs=46.8
Q ss_pred ccccEEECCCCccccccCccCCCCCCccEEEccCCcccCCCccccccCCCCcEEEccCCcccCCCCccccCCCCCCeEEe
Q 040206 138 STLETLDLGMNNFQGSIPQTNAKGCNLTSLRLSGNHLEGPLPPSLINCVNLQFLDVGNNNLSGPIPECLGNSTRLSFLDV 217 (347)
Q Consensus 138 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l 217 (347)
++|++|++++|.+....|..+..+++|++|++++|.++...+..+..+++|++|++++|.+.+..|..+..+++|+.|++
T Consensus 54 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L 133 (192)
T 1w8a_A 54 PHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNL 133 (192)
T ss_dssp TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEEC
T ss_pred CCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEe
Confidence 34444444444444344444555555555555555555444444555566666666666665555555556666666666
Q ss_pred cCCccc
Q 040206 218 GNNSLS 223 (347)
Q Consensus 218 ~~~~~~ 223 (347)
++|.+.
T Consensus 134 ~~N~l~ 139 (192)
T 1w8a_A 134 ASNPFN 139 (192)
T ss_dssp TTCCBC
T ss_pred CCCCcc
Confidence 666554
No 131
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.52 E-value=3.7e-14 Score=107.83 Aligned_cols=130 Identities=17% Similarity=0.117 Sum_probs=88.2
Q ss_pred ccccEEECCCCccc-cccCccCCCCCCccEEEccCCcccCCCccccccCCCCcEEEccCCcccCCCCccccCCCCCCeEE
Q 040206 138 STLETLDLGMNNFQ-GSIPQTNAKGCNLTSLRLSGNHLEGPLPPSLINCVNLQFLDVGNNNLSGPIPECLGNSTRLSFLD 216 (347)
Q Consensus 138 ~~L~~L~l~~~~~~-~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~ 216 (347)
++++.|++++|.+. +..|..+..+++|++|++++|.++.. ..++.+++|+.|++++|.+.+..|..+..+++|++|+
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ 94 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLN 94 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEE
T ss_pred ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEE
Confidence 45677777777665 45566667777777777777777644 5677777888888888877765666666777888888
Q ss_pred ecCCccccCc--CccccccCCcEEEcccCcccccCChhhhccccccCCCcCccCCCCCcEEEccC
Q 040206 217 VGNNSLSGPI--PECLANSTLEILDMRMNKFSGSLPQNICKKLCFGPLPPSLVNCQYLEVLDVGN 279 (347)
Q Consensus 217 l~~~~~~~~~--~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~ 279 (347)
+++|.+++.. ......++|+.|++++|.+++..+.. ...+..+++|++|++++
T Consensus 95 ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~----------~~~~~~l~~L~~L~l~d 149 (149)
T 2je0_A 95 LSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYR----------ENVFKLLPQLTYLDGYD 149 (149)
T ss_dssp CTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHH----------HHHHHHCTTCCEETTBC
T ss_pred CCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHH----------HHHHHHCCCcccccCCC
Confidence 8888777532 33334477888888888877432200 01467788888888753
No 132
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.52 E-value=3.4e-14 Score=111.23 Aligned_cols=132 Identities=19% Similarity=0.137 Sum_probs=93.1
Q ss_pred CCCCCccEEEccCCcccCCCccccccC-CCCcEEEccCCcccCCCCccccCCCCCCeEEecCCccccCcCcc-ccccCCc
Q 040206 159 AKGCNLTSLRLSGNHLEGPLPPSLINC-VNLQFLDVGNNNLSGPIPECLGNSTRLSFLDVGNNSLSGPIPEC-LANSTLE 236 (347)
Q Consensus 159 ~~~~~L~~L~l~~~~~~~~~~~~l~~~-~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~-~~~~~L~ 236 (347)
..+++|++|++++|.++.. +. +..+ ++|+.|++++|.+.+. ..+..+++|+.|++++|.+++..+.. ...++|+
T Consensus 16 ~~~~~L~~L~l~~n~l~~i-~~-~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~ 91 (176)
T 1a9n_A 16 TNAVRDRELDLRGYKIPVI-EN-LGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLT 91 (176)
T ss_dssp ECTTSCEEEECTTSCCCSC-CC-GGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCC
T ss_pred CCcCCceEEEeeCCCCchh-HH-hhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCCC
Confidence 3456677777777776633 33 3333 4788888888777643 56677778888888888777554444 3347888
Q ss_pred EEEcccCcccccCChhhhccccccCCCc--CccCCCCCcEEEccCCccCCccch---hhhhccCCCEEEcccceeec
Q 040206 237 ILDMRMNKFSGSLPQNICKKLCFGPLPP--SLVNCQYLEVLDVGNNQIDDTFLY---WLDVLLQLQVLILRSNRFWG 308 (347)
Q Consensus 237 ~L~L~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~~~L~~L~L~~n~i~~~~~~---~~~~l~~L~~l~L~~n~~~~ 308 (347)
.|++++|.+.. +|. .+..+++|++|++++|.+...+.. .+..+++|+.||+++|....
T Consensus 92 ~L~L~~N~i~~--------------~~~~~~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n~~~~ 154 (176)
T 1a9n_A 92 ELILTNNSLVE--------------LGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKVKLKE 154 (176)
T ss_dssp EEECCSCCCCC--------------GGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTEECCHHH
T ss_pred EEECCCCcCCc--------------chhhHhhhcCCCCCEEEecCCCCCCcHhHHHHHHHHCCccceeCCCcCCHHH
Confidence 88888888762 333 567888999999999998754433 47889999999999988764
No 133
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.52 E-value=2.4e-13 Score=107.92 Aligned_cols=123 Identities=24% Similarity=0.290 Sum_probs=57.5
Q ss_pred EEEccCCCCCccCCCCCCCccEEEcccCcccccCCccccCCCCccEEEcccCcccccCCccc-CCccccEEECCCCcccc
Q 040206 74 YLTLDSNLLQGSLPDLPPHMVQLLISNNSLTGEIPSSFCNLSSIQYLNLSNNSLSGQIPQCL-GNSTLETLDLGMNNFQG 152 (347)
Q Consensus 74 ~L~l~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~ 152 (347)
+++++++.+...+...++++++|++++|.+. .++..+..+++|+.|++++|.+....+..+ .+++|++|++++|.+..
T Consensus 14 ~l~~~~~~l~~ip~~~~~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~ 92 (193)
T 2wfh_A 14 VVRCSNKGLKVLPKGIPRDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRC 92 (193)
T ss_dssp EEECTTSCCSSCCSCCCTTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCB
T ss_pred EEEcCCCCCCcCCCCCCCCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCE
Confidence 4444444444444334445555555555554 344556666666666666666654443322 33344444444444443
Q ss_pred ccCccCCCCCCccEEEccCCcccCCCccccccCCCCcEEEccCCc
Q 040206 153 SIPQTNAKGCNLTSLRLSGNHLEGPLPPSLINCVNLQFLDVGNNN 197 (347)
Q Consensus 153 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~ 197 (347)
..+..+..+++|++|++++|.++...+..+..+++|+.|++++|.
T Consensus 93 i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~ 137 (193)
T 2wfh_A 93 IPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANP 137 (193)
T ss_dssp CCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSC
T ss_pred eCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCC
Confidence 333334444444444444444443322233344444444444443
No 134
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.50 E-value=5.8e-13 Score=104.33 Aligned_cols=127 Identities=20% Similarity=0.171 Sum_probs=59.2
Q ss_pred EEEccCCCCCccCCCCCCCccEEEcccCcccccCCccccCCCCccEEEcccCcccccCCcccCCccccEEECCCCccccc
Q 040206 74 YLTLDSNLLQGSLPDLPPHMVQLLISNNSLTGEIPSSFCNLSSIQYLNLSNNSLSGQIPQCLGNSTLETLDLGMNNFQGS 153 (347)
Q Consensus 74 ~L~l~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~ 153 (347)
.++++++++...+...++++++|++++|.+....+..+..+++|++|++++|.+....+.
T Consensus 11 ~l~~~~~~l~~~p~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~-------------------- 70 (177)
T 2o6r_A 11 EIRCNSKGLTSVPTGIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDG-------------------- 70 (177)
T ss_dssp EEECCSSCCSSCCTTCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTT--------------------
T ss_pred EEEecCCCCccCCCCCCCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChh--------------------
Confidence 344444444433333334444444444444433334455555566666555555433332
Q ss_pred cCccCCCCCCccEEEccCCcccCCCccccccCCCCcEEEccCCcccCCCCccccCCCCCCeEEecCCccc
Q 040206 154 IPQTNAKGCNLTSLRLSGNHLEGPLPPSLINCVNLQFLDVGNNNLSGPIPECLGNSTRLSFLDVGNNSLS 223 (347)
Q Consensus 154 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~~~~~ 223 (347)
.+..+++|++|++++|.++...+..+..+++|+.|++++|.+.+..+..+..+++|+.|++++|.+.
T Consensus 71 ---~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~ 137 (177)
T 2o6r_A 71 ---VFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWD 137 (177)
T ss_dssp ---TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred ---HccCCCccCEEECCCCCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCee
Confidence 2334444444444444444333333444555555555555554333333444555555555555544
No 135
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.47 E-value=7.1e-12 Score=110.80 Aligned_cols=248 Identities=10% Similarity=0.089 Sum_probs=182.3
Q ss_pred CCCcccEEEcCCCcCCCCCCCCC--CCCcEEEccCCCCCccCCCCC--CCccEEEcccCcccccCCccccCCCCccEEEc
Q 040206 47 GVHTLQFLILSQNVLTSIDHLPW--KNLQYLTLDSNLLQGSLPDLP--PHMVQLLISNNSLTGEIPSSFCNLSSIQYLNL 122 (347)
Q Consensus 47 ~~~~L~~L~l~~~~l~~~~~~~~--~~L~~L~l~~~~~~~~~~~~~--~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l 122 (347)
.+..++.+.+.++ ++.++...| .+|+.+.+..+ +.......+ .+|+.+.+.. .+..+...+|.++++|+.+++
T Consensus 111 ~~~~l~~i~ip~~-i~~I~~~aF~~~~L~~i~l~~~-i~~I~~~aF~~~~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l 187 (401)
T 4fdw_A 111 ILKGYNEIILPNS-VKSIPKDAFRNSQIAKVVLNEG-LKSIGDMAFFNSTVQEIVFPS-TLEQLKEDIFYYCYNLKKADL 187 (401)
T ss_dssp ECSSCSEEECCTT-CCEECTTTTTTCCCSEEECCTT-CCEECTTTTTTCCCCEEECCT-TCCEECSSTTTTCTTCCEEEC
T ss_pred ecCCccEEEECCc-cCEehHhhcccCCccEEEeCCC-ccEECHHhcCCCCceEEEeCC-CccEehHHHhhCcccCCeeec
Confidence 3467788887653 444544222 36899988765 443333222 4699999986 666677788999999999999
Q ss_pred ccCcccccCCcccCCccccEEECCCCccccccCccCCCCCCccEEEccCCcccCCCccccccCCCCcEEEccCCcccCCC
Q 040206 123 SNNSLSGQIPQCLGNSTLETLDLGMNNFQGSIPQTNAKGCNLTSLRLSGNHLEGPLPPSLINCVNLQFLDVGNNNLSGPI 202 (347)
Q Consensus 123 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~ 202 (347)
.++.+.......+...+|+.+.+..+ +.......|..+++|+.+.+..+ ++.....+|.. .+|+.+.+.. .+....
T Consensus 188 ~~n~l~~I~~~aF~~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~lp~-~i~~I~ 263 (401)
T 4fdw_A 188 SKTKITKLPASTFVYAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITTVKLPN-GVTNIA 263 (401)
T ss_dssp TTSCCSEECTTTTTTCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCSEEEEET-TCCEEC
T ss_pred CCCcceEechhhEeecccCEEEeCCc-hheehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCccEEEeCC-CccEEC
Confidence 99999888888888889999999865 55567788999999999999874 45455667777 7899999954 455456
Q ss_pred CccccCCCCCCeEEecCCccc-----cCcCcccc-ccCCcEEEcccCcccccCChhhhccccccCCCcCccCCCCCcEEE
Q 040206 203 PECLGNSTRLSFLDVGNNSLS-----GPIPECLA-NSTLEILDMRMNKFSGSLPQNICKKLCFGPLPPSLVNCQYLEVLD 276 (347)
Q Consensus 203 ~~~l~~~~~L~~L~l~~~~~~-----~~~~~~~~-~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~ 276 (347)
..+|..|++|+.+.+.++.+. ......+. .++|+.+.+..+ +... -..+|.+|.+|+.+.
T Consensus 264 ~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~~-i~~I-------------~~~aF~~c~~L~~l~ 329 (401)
T 4fdw_A 264 SRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPES-IRIL-------------GQGLLGGNRKVTQLT 329 (401)
T ss_dssp TTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCTT-CCEE-------------CTTTTTTCCSCCEEE
T ss_pred hhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCCc-eEEE-------------hhhhhcCCCCccEEE
Confidence 778999999999999887664 23333333 378999999843 4421 124688999999999
Q ss_pred ccCCccCCccchhhhhccCCCEEEcccceeecccCCccccc
Q 040206 277 VGNNQIDDTFLYWLDVLLQLQVLILRSNRFWGPIGKLRSRW 317 (347)
Q Consensus 277 L~~n~i~~~~~~~~~~l~~L~~l~L~~n~~~~~~~~~~~~~ 317 (347)
+..+ +..+....|..+ +|+.+++++|....-....+...
T Consensus 330 lp~~-l~~I~~~aF~~~-~L~~l~l~~n~~~~l~~~~F~~~ 368 (401)
T 4fdw_A 330 IPAN-VTQINFSAFNNT-GIKEVKVEGTTPPQVFEKVWYGF 368 (401)
T ss_dssp ECTT-CCEECTTSSSSS-CCCEEEECCSSCCBCCCSSCCCS
T ss_pred ECcc-ccEEcHHhCCCC-CCCEEEEcCCCCcccccccccCC
Confidence 9665 666677788999 99999999997765444444443
No 136
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.41 E-value=9e-13 Score=103.09 Aligned_cols=109 Identities=16% Similarity=0.109 Sum_probs=48.2
Q ss_pred ccCCCCccEEEcccCcccccCCcccCCc-cccEEECCCCccccccCccCCCCCCccEEEccCCcccCCCccccccCCCCc
Q 040206 111 FCNLSSIQYLNLSNNSLSGQIPQCLGNS-TLETLDLGMNNFQGSIPQTNAKGCNLTSLRLSGNHLEGPLPPSLINCVNLQ 189 (347)
Q Consensus 111 ~~~l~~L~~L~l~~~~~~~~~~~~~~~~-~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~ 189 (347)
+..+.+|+.|++++|.+... +...... +|+.|++++|.+... ..+..+++|++|++++|.++...+..+..+++|+
T Consensus 15 ~~~~~~L~~L~l~~n~l~~i-~~~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~ 91 (176)
T 1a9n_A 15 YTNAVRDRELDLRGYKIPVI-ENLGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLT 91 (176)
T ss_dssp EECTTSCEEEECTTSCCCSC-CCGGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCC
T ss_pred cCCcCCceEEEeeCCCCchh-HHhhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCCC
Confidence 33455555666655555532 2222222 555555555554422 3344444455555555544432222234444455
Q ss_pred EEEccCCcccCCCCc--cccCCCCCCeEEecCCccc
Q 040206 190 FLDVGNNNLSGPIPE--CLGNSTRLSFLDVGNNSLS 223 (347)
Q Consensus 190 ~L~l~~n~~~~~~~~--~l~~~~~L~~L~l~~~~~~ 223 (347)
.|++++|.+.+ .+. .+..+++|+.|++++|.+.
T Consensus 92 ~L~L~~N~i~~-~~~~~~l~~l~~L~~L~l~~N~i~ 126 (176)
T 1a9n_A 92 ELILTNNSLVE-LGDLDPLASLKSLTYLCILRNPVT 126 (176)
T ss_dssp EEECCSCCCCC-GGGGGGGGGCTTCCEEECCSSGGG
T ss_pred EEECCCCcCCc-chhhHhhhcCCCCCEEEecCCCCC
Confidence 55554444432 222 3334444444444444433
No 137
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.37 E-value=3.2e-11 Score=106.80 Aligned_cols=265 Identities=11% Similarity=0.117 Sum_probs=132.2
Q ss_pred CCC-hhhhcCCCccEEeccCCcccccCChhhhhcCCCcccEEEcCCCcCCCCCC---CCCCCCcEEEccCC---------
Q 040206 14 EFP-DILRTQHQLEWLDLSKNQIRGRIPSWMWDIGVHTLQFLILSQNVLTSIDH---LPWKNLQYLTLDSN--------- 80 (347)
Q Consensus 14 ~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~---~~~~~L~~L~l~~~--------- 80 (347)
.+. .+|.++.+|+.+.+.. .++ .+....+. +|.+|+.+++..+ ++.++. ..+.+|+.+.+..+
T Consensus 61 sIg~~AF~~c~~L~~i~lp~-~i~-~I~~~aF~-~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~l~~i~~~aF 136 (394)
T 4fs7_A 61 SIGYAAFQGCRKVTEIKIPS-TVR-EIGEFAFE-NCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLMLKSIGVEAF 136 (394)
T ss_dssp EECTTTTTTCTTEEEEECCT-TCC-EECTTTTT-TCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTTCCEECTTTT
T ss_pred EhHHHHhhCCCCceEEEeCC-Ccc-CcchhHhh-CCCCCcEEEeCCC-ceEccchhhcccccchhhcccCceeeecceee
Confidence 444 3677777777777753 344 44444444 5677777777543 333333 22333333332211
Q ss_pred ---CC------------CccCCCCCCCccEEEcccCcccccCCccccCCCCccEEEcccCcccccCCccc-CCccccEEE
Q 040206 81 ---LL------------QGSLPDLPPHMVQLLISNNSLTGEIPSSFCNLSSIQYLNLSNNSLSGQIPQCL-GNSTLETLD 144 (347)
Q Consensus 81 ---~~------------~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~-~~~~L~~L~ 144 (347)
.. .......+++|+.+.+..+.. .+...+|.++.+|+.+.+..+ +.......+ .+..|+.+.
T Consensus 137 ~~~~~~~~~~~~~~~~i~~~aF~~c~~L~~i~l~~~~~-~I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~L~~i~ 214 (394)
T 4fs7_A 137 KGCDFKEITIPEGVTVIGDEAFATCESLEYVSLPDSME-TLHNGLFSGCGKLKSIKLPRN-LKIIRDYCFAECILLENME 214 (394)
T ss_dssp TTCCCSEEECCTTCCEECTTTTTTCTTCCEEECCTTCC-EECTTTTTTCTTCCBCCCCTT-CCEECTTTTTTCTTCCBCC
T ss_pred ecccccccccCccccccchhhhcccCCCcEEecCCccc-eeccccccCCCCceEEEcCCC-ceEeCchhhccccccceee
Confidence 00 111222346778887765433 255566777777877777654 222222222 334455544
Q ss_pred CCCCcc---------------------ccccCccCCCCCCccEEEccCCcccCCCccccccCCCCcEEEccCCcccCCCC
Q 040206 145 LGMNNF---------------------QGSIPQTNAKGCNLTSLRLSGNHLEGPLPPSLINCVNLQFLDVGNNNLSGPIP 203 (347)
Q Consensus 145 l~~~~~---------------------~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~ 203 (347)
+..+.. .......+..+..++.+.+..+... .....+..+..++.+......+. .
T Consensus 215 ~~~~~~~i~~~~~~~~~l~~i~ip~~~~~i~~~~f~~~~~l~~~~~~~~~~~-i~~~~F~~~~~l~~~~~~~~~i~---~ 290 (394)
T 4fs7_A 215 FPNSLYYLGDFALSKTGVKNIIIPDSFTELGKSVFYGCTDLESISIQNNKLR-IGGSLFYNCSGLKKVIYGSVIVP---E 290 (394)
T ss_dssp CCTTCCEECTTTTTTCCCCEEEECTTCCEECSSTTTTCSSCCEEEECCTTCE-ECSCTTTTCTTCCEEEECSSEEC---T
T ss_pred cCCCceEeehhhcccCCCceEEECCCceecccccccccccceeEEcCCCcce-eeccccccccccceeccCceeec---c
Confidence 443321 1122223334444444444333221 22333444444444444433222 2
Q ss_pred ccccCCCCCCeEEecCCccccCcCccccc-cCCcEEEcccCcccccCChhhhccccccCCCcCccCCCCCcEEEccCCcc
Q 040206 204 ECLGNSTRLSFLDVGNNSLSGPIPECLAN-STLEILDMRMNKFSGSLPQNICKKLCFGPLPPSLVNCQYLEVLDVGNNQI 282 (347)
Q Consensus 204 ~~l~~~~~L~~L~l~~~~~~~~~~~~~~~-~~L~~L~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~i 282 (347)
..+..+.+|+.+.+..+ ++......+.. .+|+.+++..+ ++. + -..+|.+|.+|+.+.+..+ +
T Consensus 291 ~~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~-I------------~~~aF~~c~~L~~i~lp~~-l 354 (394)
T 4fs7_A 291 KTFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VEE-I------------GKRSFRGCTSLSNINFPLS-L 354 (394)
T ss_dssp TTTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CCE-E------------CTTTTTTCTTCCEECCCTT-C
T ss_pred ccccccccccccccccc-cceechhhhcCCCCCCEEEeCCc-ccE-E------------hHHhccCCCCCCEEEECcc-c
Confidence 34555666666666543 33333333332 56666666432 221 0 1235777777887777665 5
Q ss_pred CCccchhhhhccCCCEEEcccc
Q 040206 283 DDTFLYWLDVLLQLQVLILRSN 304 (347)
Q Consensus 283 ~~~~~~~~~~l~~L~~l~L~~n 304 (347)
..+....|.+|++|+.+++..+
T Consensus 355 ~~I~~~aF~~C~~L~~i~lp~~ 376 (394)
T 4fs7_A 355 RKIGANAFQGCINLKKVELPKR 376 (394)
T ss_dssp CEECTTTBTTCTTCCEEEEEGG
T ss_pred cEehHHHhhCCCCCCEEEECCC
Confidence 5555666777777887777543
No 138
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.36 E-value=5.3e-15 Score=118.22 Aligned_cols=134 Identities=22% Similarity=0.141 Sum_probs=69.6
Q ss_pred cCCCCCCccEEEccCCcccCCCccccccCCCCcEEEccCCcccCCCCccccCCCCCCeEEecCCccccCcCccccccCCc
Q 040206 157 TNAKGCNLTSLRLSGNHLEGPLPPSLINCVNLQFLDVGNNNLSGPIPECLGNSTRLSFLDVGNNSLSGPIPECLANSTLE 236 (347)
Q Consensus 157 ~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~ 236 (347)
.+..+++|++|++++|.++. .+ .+..+++|+.|++++|.+. .+|..+..+++|+.|++++|.+++. +.....++|+
T Consensus 43 ~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~~~~~L~~L~L~~N~l~~l-~~~~~l~~L~ 118 (198)
T 1ds9_A 43 TLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIASL-SGIEKLVNLR 118 (198)
T ss_dssp HHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHHHHHHCSEEEEEEEECCCH-HHHHHHHHSS
T ss_pred HHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhhcCCcCCEEECcCCcCCcC-CccccCCCCC
Confidence 44455566666666665553 33 5555566666666666655 3344444555666666666655532 2222235566
Q ss_pred EEEcccCcccccCChhhhccccccCCCcCccCCCCCcEEEccCCccCCccch----------hhhhccCCCEEEccccee
Q 040206 237 ILDMRMNKFSGSLPQNICKKLCFGPLPPSLVNCQYLEVLDVGNNQIDDTFLY----------WLDVLLQLQVLILRSNRF 306 (347)
Q Consensus 237 ~L~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~i~~~~~~----------~~~~l~~L~~l~L~~n~~ 306 (347)
.|++++|.+.+..+ ...+..+++|++|++++|.+.+..+. .+..+++|+.|| ++++
T Consensus 119 ~L~l~~N~i~~~~~------------~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld--~~~i 184 (198)
T 1ds9_A 119 VLYMSNNKITNWGE------------IDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD--GMPV 184 (198)
T ss_dssp EEEESEEECCCHHH------------HHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC--CGGG
T ss_pred EEECCCCcCCchhH------------HHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC--Cccc
Confidence 66666665552100 01244555666666666665443222 245556666555 4555
Q ss_pred ec
Q 040206 307 WG 308 (347)
Q Consensus 307 ~~ 308 (347)
+.
T Consensus 185 ~~ 186 (198)
T 1ds9_A 185 DV 186 (198)
T ss_dssp TT
T ss_pred CH
Confidence 43
No 139
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.34 E-value=1.4e-14 Score=115.72 Aligned_cols=119 Identities=24% Similarity=0.249 Sum_probs=98.7
Q ss_pred CCccccccCCCCcEEEccCCcccCCCCccccCCCCCCeEEecCCccccCcCccccccCCcEEEcccCcccccCChhhhcc
Q 040206 177 PLPPSLINCVNLQFLDVGNNNLSGPIPECLGNSTRLSFLDVGNNSLSGPIPECLANSTLEILDMRMNKFSGSLPQNICKK 256 (347)
Q Consensus 177 ~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~ 256 (347)
.++..+..+++|+.|++++|.+.+ +| .+..+++|+.|++++|.++.........++|+.|++++|.+++
T Consensus 39 ~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~~N~l~~--------- 107 (198)
T 1ds9_A 39 KMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQIAS--------- 107 (198)
T ss_dssp CCHHHHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEECSCSSHHHHHHHCSEEEEEEEECCC---------
T ss_pred hhhHHHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcccccchhhcCCcCCEEECcCCcCCc---------
Confidence 344588999999999999999985 55 8889999999999999998543323333899999999999984
Q ss_pred ccccCCCcCccCCCCCcEEEccCCccCCccc-hhhhhccCCCEEEcccceeecccCC
Q 040206 257 LCFGPLPPSLVNCQYLEVLDVGNNQIDDTFL-YWLDVLLQLQVLILRSNRFWGPIGK 312 (347)
Q Consensus 257 ~~~~~l~~~~~~~~~L~~L~L~~n~i~~~~~-~~~~~l~~L~~l~L~~n~~~~~~~~ 312 (347)
+| .+..+++|++|++++|.+.+... ..+..+++|+.|++++|++.+.+|.
T Consensus 108 -----l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~ 158 (198)
T 1ds9_A 108 -----LS-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKE 158 (198)
T ss_dssp -----HH-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHT
T ss_pred -----CC-ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCcccccccc
Confidence 23 46778999999999999987544 5688999999999999999887665
No 140
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.30 E-value=4.2e-14 Score=123.87 Aligned_cols=109 Identities=21% Similarity=0.209 Sum_probs=46.4
Q ss_pred CCccEEEcccCcccccCCccc------CCccccEEECCCCccccccCccC-CCCCCccEEEccCCcccCCCcccc-----
Q 040206 115 SSIQYLNLSNNSLSGQIPQCL------GNSTLETLDLGMNNFQGSIPQTN-AKGCNLTSLRLSGNHLEGPLPPSL----- 182 (347)
Q Consensus 115 ~~L~~L~l~~~~~~~~~~~~~------~~~~L~~L~l~~~~~~~~~~~~~-~~~~~L~~L~l~~~~~~~~~~~~l----- 182 (347)
+.|+.|++++|.++......+ ...+|+.|++++|.+.......+ ..+++|++|++++|.++......+
T Consensus 72 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~ 151 (372)
T 3un9_A 72 SSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLL 151 (372)
T ss_dssp TTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHH
T ss_pred hhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHH
Confidence 456666666666543221111 11355555665555432211111 112345555555555442222222
Q ss_pred ccCCCCcEEEccCCcccC----CCCccccCCCCCCeEEecCCccc
Q 040206 183 INCVNLQFLDVGNNNLSG----PIPECLGNSTRLSFLDVGNNSLS 223 (347)
Q Consensus 183 ~~~~~L~~L~l~~n~~~~----~~~~~l~~~~~L~~L~l~~~~~~ 223 (347)
...++|++|++++|.+.+ .++..+..+++|++|++++|.+.
T Consensus 152 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~ 196 (372)
T 3un9_A 152 HDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLG 196 (372)
T ss_dssp STTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCH
T ss_pred hcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCC
Confidence 123445555555554432 12222344445555555555444
No 141
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.26 E-value=5.5e-11 Score=92.22 Aligned_cols=104 Identities=21% Similarity=0.147 Sum_probs=53.6
Q ss_pred cEEEcccCcccccCCcccCCccccEEECCCCccccccCccCCCCCCccEEEccCCcccCCCccccccCCCCcEEEccCCc
Q 040206 118 QYLNLSNNSLSGQIPQCLGNSTLETLDLGMNNFQGSIPQTNAKGCNLTSLRLSGNHLEGPLPPSLINCVNLQFLDVGNNN 197 (347)
Q Consensus 118 ~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~ 197 (347)
+.++++++.+...+... ..+++.|++++|.+....+..+..+++|++|++++|+++...+..+..+++|+.|++++|.
T Consensus 12 ~~l~~s~n~l~~ip~~~--~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~ 89 (170)
T 3g39_A 12 TTVDCSGKSLASVPTGI--PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQ 89 (170)
T ss_dssp TEEECTTSCCSSCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CEEEeCCCCcCccCccC--CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCCc
Confidence 34455555444332221 1345555555555554444555555555555555555554444444555555555555555
Q ss_pred ccCCCCccccCCCCCCeEEecCCccc
Q 040206 198 LSGPIPECLGNSTRLSFLDVGNNSLS 223 (347)
Q Consensus 198 ~~~~~~~~l~~~~~L~~L~l~~~~~~ 223 (347)
+.+..+..+..+++|+.|++++|.+.
T Consensus 90 l~~~~~~~~~~l~~L~~L~L~~N~~~ 115 (170)
T 3g39_A 90 LKSIPRGAFDNLKSLTHIWLLNNPWD 115 (170)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred cCEeCHHHhcCCCCCCEEEeCCCCCC
Confidence 55444444555555555555555544
No 142
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.26 E-value=5.3e-11 Score=92.31 Aligned_cols=102 Identities=21% Similarity=0.211 Sum_probs=54.4
Q ss_pred cEEEccCCCCCccCCCCCCCccEEEcccCcccccCCccccCCCCccEEEcccCcccccCCccc-CCccccEEECCCCccc
Q 040206 73 QYLTLDSNLLQGSLPDLPPHMVQLLISNNSLTGEIPSSFCNLSSIQYLNLSNNSLSGQIPQCL-GNSTLETLDLGMNNFQ 151 (347)
Q Consensus 73 ~~L~l~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~-~~~~L~~L~l~~~~~~ 151 (347)
+.++++++.+...+...++++++|++++|.+....+..|..+++|++|++++|.+....+..+ .+++|++|++++|.+.
T Consensus 12 ~~l~~s~n~l~~ip~~~~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~ 91 (170)
T 3g39_A 12 TTVDCSGKSLASVPTGIPTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLK 91 (170)
T ss_dssp TEEECTTSCCSSCCSCCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC
T ss_pred CEEEeCCCCcCccCccCCCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCCccC
Confidence 445555555554444444555556666666655555566666666666666666665444433 3445555555555554
Q ss_pred cccCccCCCCCCccEEEccCCcc
Q 040206 152 GSIPQTNAKGCNLTSLRLSGNHL 174 (347)
Q Consensus 152 ~~~~~~~~~~~~L~~L~l~~~~~ 174 (347)
...+..+..+++|++|++++|.+
T Consensus 92 ~~~~~~~~~l~~L~~L~L~~N~~ 114 (170)
T 3g39_A 92 SIPRGAFDNLKSLTHIWLLNNPW 114 (170)
T ss_dssp CCCTTTTTTCTTCCEEECCSSCB
T ss_pred EeCHHHhcCCCCCCEEEeCCCCC
Confidence 33333344445555555555444
No 143
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.25 E-value=1.7e-13 Score=120.08 Aligned_cols=137 Identities=23% Similarity=0.288 Sum_probs=85.3
Q ss_pred CCccEEEcccCcccccCCccc--CCccccEEECCCCccccccCccC-----CCCCCccEEEccCCcccCC----Cccccc
Q 040206 115 SSIQYLNLSNNSLSGQIPQCL--GNSTLETLDLGMNNFQGSIPQTN-----AKGCNLTSLRLSGNHLEGP----LPPSLI 183 (347)
Q Consensus 115 ~~L~~L~l~~~~~~~~~~~~~--~~~~L~~L~l~~~~~~~~~~~~~-----~~~~~L~~L~l~~~~~~~~----~~~~l~ 183 (347)
++|++|++++|.+.......+ .+.+|+.|++++|.+.......+ ...+.|++|++++|.++.. ++..+.
T Consensus 101 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~ 180 (372)
T 3un9_A 101 HALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLA 180 (372)
T ss_dssp SCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHH
T ss_pred CCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHHh
Confidence 567777777776643221111 23467777777777643322222 3456788888888887642 333446
Q ss_pred cCCCCcEEEccCCcccCC----CCccccCCCCCCeEEecCCccccCcCcccc-----ccCCcEEEcccCcccccCCh
Q 040206 184 NCVNLQFLDVGNNNLSGP----IPECLGNSTRLSFLDVGNNSLSGPIPECLA-----NSTLEILDMRMNKFSGSLPQ 251 (347)
Q Consensus 184 ~~~~L~~L~l~~n~~~~~----~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~-----~~~L~~L~L~~~~~~~~~~~ 251 (347)
.+++|++|++++|.+.+. ++..+..+++|+.|++++|.+++.....+. .++|++|+|++|.+++.+..
T Consensus 181 ~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~~~g~~ 257 (372)
T 3un9_A 181 GNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELSSEGRQ 257 (372)
T ss_dssp TCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCCHHHHH
T ss_pred cCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCCHHHHH
Confidence 788899999999988642 244566677888888888887654333222 25667777777766654444
No 144
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.22 E-value=1.1e-10 Score=90.86 Aligned_cols=103 Identities=21% Similarity=0.243 Sum_probs=57.4
Q ss_pred cEEEccCCCCCccCCCCCCCccEEEcccCcccccCCccccCCCCccEEEcccCcccccCCccc-CCccccEEECCCCccc
Q 040206 73 QYLTLDSNLLQGSLPDLPPHMVQLLISNNSLTGEIPSSFCNLSSIQYLNLSNNSLSGQIPQCL-GNSTLETLDLGMNNFQ 151 (347)
Q Consensus 73 ~~L~l~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~-~~~~L~~L~l~~~~~~ 151 (347)
+.++++++.+...+...+++|++|++++|.+....+..|..+++|++|++++|.+...++..+ .+++|+.|++++|.+.
T Consensus 15 ~~l~~~~n~l~~iP~~~~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~l~ 94 (174)
T 2r9u_A 15 TLVNCQNIRLASVPAGIPTDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLK 94 (174)
T ss_dssp SEEECCSSCCSSCCSCCCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC
T ss_pred cEEEeCCCCCCccCCCcCCCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCccc
Confidence 455555555555444445566666666666665556666677777777777776665444433 3445555555555554
Q ss_pred cccCccCCCCCCccEEEccCCccc
Q 040206 152 GSIPQTNAKGCNLTSLRLSGNHLE 175 (347)
Q Consensus 152 ~~~~~~~~~~~~L~~L~l~~~~~~ 175 (347)
...+..+..+++|++|++++|.+.
T Consensus 95 ~l~~~~~~~l~~L~~L~L~~N~~~ 118 (174)
T 2r9u_A 95 SIPRGAFDNLKSLTHIYLYNNPWD 118 (174)
T ss_dssp CCCTTTTTTCTTCSEEECCSSCBC
T ss_pred eeCHHHhccccCCCEEEeCCCCcc
Confidence 333333444555555555555443
No 145
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.21 E-value=1.3e-10 Score=90.52 Aligned_cols=104 Identities=20% Similarity=0.163 Sum_probs=51.4
Q ss_pred cEEEcccCcccccCCcccCCccccEEECCCCccccccCccCCCCCCccEEEccCCcccCCCccccccCCCCcEEEccCCc
Q 040206 118 QYLNLSNNSLSGQIPQCLGNSTLETLDLGMNNFQGSIPQTNAKGCNLTSLRLSGNHLEGPLPPSLINCVNLQFLDVGNNN 197 (347)
Q Consensus 118 ~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~ 197 (347)
+.++++++.+...+... .++|+.|++++|.+....+..+..+++|++|++++|.++...+..+..+++|+.|++++|.
T Consensus 15 ~~l~~~~n~l~~iP~~~--~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~ 92 (174)
T 2r9u_A 15 TLVNCQNIRLASVPAGI--PTDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNH 92 (174)
T ss_dssp SEEECCSSCCSSCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred cEEEeCCCCCCccCCCc--CCCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCc
Confidence 34444444444322221 1345555555555544444455555555555555555553333334555555555555555
Q ss_pred ccCCCCccccCCCCCCeEEecCCccc
Q 040206 198 LSGPIPECLGNSTRLSFLDVGNNSLS 223 (347)
Q Consensus 198 ~~~~~~~~l~~~~~L~~L~l~~~~~~ 223 (347)
+.+..+..+..+++|+.|++++|.+.
T Consensus 93 l~~l~~~~~~~l~~L~~L~L~~N~~~ 118 (174)
T 2r9u_A 93 LKSIPRGAFDNLKSLTHIYLYNNPWD 118 (174)
T ss_dssp CCCCCTTTTTTCTTCSEEECCSSCBC
T ss_pred cceeCHHHhccccCCCEEEeCCCCcc
Confidence 55433334555555555555555544
No 146
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.16 E-value=2.9e-09 Score=94.17 Aligned_cols=245 Identities=12% Similarity=0.111 Sum_probs=136.7
Q ss_pred ccccCChhhhhcCCCcccEEEcCCCcCCCCCC---CCCCCCcEEEccCCCCCc---cCCCCCCCccEEEcccC-------
Q 040206 35 IRGRIPSWMWDIGVHTLQFLILSQNVLTSIDH---LPWKNLQYLTLDSNLLQG---SLPDLPPHMVQLLISNN------- 101 (347)
Q Consensus 35 ~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~---~~~~~L~~L~l~~~~~~~---~~~~~~~~L~~L~l~~~------- 101 (347)
++ .+....+. +|.+|+++.+..+ ++.++. ..+.+|+.+++.++ +.. .....++.|+.+.+..+
T Consensus 59 Vt-sIg~~AF~-~c~~L~~i~lp~~-i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~l~~i~~~ 134 (394)
T 4fs7_A 59 VV-SIGYAAFQ-GCRKVTEIKIPST-VREIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLMLKSIGVE 134 (394)
T ss_dssp EE-EECTTTTT-TCTTEEEEECCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTTCCEECTT
T ss_pred Ee-EhHHHHhh-CCCCceEEEeCCC-ccCcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCceeeecce
Confidence 44 45555555 7799999999754 666665 55688999999754 221 12222233333332211
Q ss_pred --------------cccccCCccccCCCCccEEEcccCcccccCCccc-CCccccEEECCCCccccccCccCCCCCCccE
Q 040206 102 --------------SLTGEIPSSFCNLSSIQYLNLSNNSLSGQIPQCL-GNSTLETLDLGMNNFQGSIPQTNAKGCNLTS 166 (347)
Q Consensus 102 --------------~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~ 166 (347)
.+..+...+|.++.+|+.+.+.++... .....+ ++.+|+.+.+..+ +.......+..+..|+.
T Consensus 135 aF~~~~~~~~~~~~~~~~i~~~aF~~c~~L~~i~l~~~~~~-I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~L~~ 212 (394)
T 4fs7_A 135 AFKGCDFKEITIPEGVTVIGDEAFATCESLEYVSLPDSMET-LHNGLFSGCGKLKSIKLPRN-LKIIRDYCFAECILLEN 212 (394)
T ss_dssp TTTTCCCSEEECCTTCCEECTTTTTTCTTCCEEECCTTCCE-ECTTTTTTCTTCCBCCCCTT-CCEECTTTTTTCTTCCB
T ss_pred eeecccccccccCccccccchhhhcccCCCcEEecCCccce-eccccccCCCCceEEEcCCC-ceEeCchhhccccccce
Confidence 111233457888999999999876433 444444 5678999888765 33344556666666666
Q ss_pred EEccCCccc---------------------CCCccccccCCCCcEEEccCCcccCCCCccccCCCCCCeEEecCCccccC
Q 040206 167 LRLSGNHLE---------------------GPLPPSLINCVNLQFLDVGNNNLSGPIPECLGNSTRLSFLDVGNNSLSGP 225 (347)
Q Consensus 167 L~l~~~~~~---------------------~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~~~~~~~ 225 (347)
+.+..+... .....++..+..++.+.+..+... .....+..+..++.+......+..
T Consensus 213 i~~~~~~~~i~~~~~~~~~l~~i~ip~~~~~i~~~~f~~~~~l~~~~~~~~~~~-i~~~~F~~~~~l~~~~~~~~~i~~- 290 (394)
T 4fs7_A 213 MEFPNSLYYLGDFALSKTGVKNIIIPDSFTELGKSVFYGCTDLESISIQNNKLR-IGGSLFYNCSGLKKVIYGSVIVPE- 290 (394)
T ss_dssp CCCCTTCCEECTTTTTTCCCCEEEECTTCCEECSSTTTTCSSCCEEEECCTTCE-ECSCTTTTCTTCCEEEECSSEECT-
T ss_pred eecCCCceEeehhhcccCCCceEEECCCceecccccccccccceeEEcCCCcce-eeccccccccccceeccCceeecc-
Confidence 655443221 011122333344444444333221 222334444444444433322111
Q ss_pred cCccccccCCcEEEcccCcccccCChhhhccccccCC-CcCccCCCCCcEEEccCCccCCccchhhhhccCCCEEEcccc
Q 040206 226 IPECLANSTLEILDMRMNKFSGSLPQNICKKLCFGPL-PPSLVNCQYLEVLDVGNNQIDDTFLYWLDVLLQLQVLILRSN 304 (347)
Q Consensus 226 ~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~l-~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~l~L~~n 304 (347)
.......+|+.+.+..+ +. .+ ..+|.+|.+|+.+++..+ ++.+....|.+|.+|+.+++..+
T Consensus 291 -~~F~~~~~L~~i~l~~~-i~--------------~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~ 353 (394)
T 4fs7_A 291 -KTFYGCSSLTEVKLLDS-VK--------------FIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS 353 (394)
T ss_dssp -TTTTTCTTCCEEEECTT-CC--------------EECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT
T ss_pred -ccccccccccccccccc-cc--------------eechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc
Confidence 11122246666666443 22 12 246889999999999754 66666778899999999999765
No 147
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=99.15 E-value=5.9e-09 Score=92.22 Aligned_cols=271 Identities=11% Similarity=0.147 Sum_probs=156.5
Q ss_pred CCCh-hhhcCC-CccEEeccCCcccccCChhhhhcCCCcccEEEcCCC---cCCCCCC---CCCCCCcEEEccCCC--CC
Q 040206 14 EFPD-ILRTQH-QLEWLDLSKNQIRGRIPSWMWDIGVHTLQFLILSQN---VLTSIDH---LPWKNLQYLTLDSNL--LQ 83 (347)
Q Consensus 14 ~~~~-~~~~~~-~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~---~l~~~~~---~~~~~L~~L~l~~~~--~~ 83 (347)
.+++ +|.+++ .|+.+.+.. .++ .+....+. +|.+|+.+.+..+ .++.++. ..+.+|+.+.+..+- +.
T Consensus 53 ~Ig~~aF~~~~~~L~sI~iP~-svt-~Ig~~AF~-~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~~~~I~ 129 (394)
T 4gt6_A 53 KIGDRVFCNYKYVLTSVQIPD-TVT-EIGSNAFY-NCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDSVTEID 129 (394)
T ss_dssp EECTTTTTTCCSCCCEEEECT-TCC-EECTTTTT-TCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTTCSEEC
T ss_pred EcCHhhccCCCCcCEEEEECC-Cee-EEhHHHhh-CCccCceEeecCCCCCeeeEechhhchhcccceeeccCCccceeh
Confidence 4443 677764 578887754 344 44444444 6678888877654 2555544 334556665554321 11
Q ss_pred ccCCCCCCCccEEEcccCcccccCCccccCCCCccEEEcccCcccccCCcccCCccccEEECCCCccccccCccCCCCCC
Q 040206 84 GSLPDLPPHMVQLLISNNSLTGEIPSSFCNLSSIQYLNLSNNSLSGQIPQCLGNSTLETLDLGMNNFQGSIPQTNAKGCN 163 (347)
Q Consensus 84 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 163 (347)
......+.+|+.+.+..+. ..+....|..+..|+.+.+.++ +.......+....|+.+.+..+... .....+..+..
T Consensus 130 ~~aF~~c~~L~~i~lp~~~-~~I~~~~F~~c~~L~~i~~~~~-~~~I~~~aF~~~~l~~i~ip~~~~~-i~~~af~~c~~ 206 (394)
T 4gt6_A 130 SEAFHHCEELDTVTIPEGV-TSVADGMFSYCYSLHTVTLPDS-VTAIEERAFTGTALTQIHIPAKVTR-IGTNAFSECFA 206 (394)
T ss_dssp TTTTTTCTTCCEEECCTTC-CEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCCCSEEEECTTCCE-ECTTTTTTCTT
T ss_pred hhhhhhhccccccccccee-eeecccceecccccccccccce-eeEeccccccccceeEEEECCcccc-cccchhhhccc
Confidence 2222334667777775432 2244556667777777777654 3334444444455666665443221 22333333333
Q ss_pred ccEEEccCC------------------------------------cccCCCccccccCCCCcEEEccCCcccCCCCcccc
Q 040206 164 LTSLRLSGN------------------------------------HLEGPLPPSLINCVNLQFLDVGNNNLSGPIPECLG 207 (347)
Q Consensus 164 L~~L~l~~~------------------------------------~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~ 207 (347)
+..+..... .+......+|..+..|+.+.+..+... ....++.
T Consensus 207 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip~~v~~i~~~aF~~c~~L~~i~lp~~~~~-I~~~aF~ 285 (394)
T 4gt6_A 207 LSTITSDSESYPAIDNVLYEKSANGDYALIRYPSQREDPAFKIPNGVARIETHAFDSCAYLASVKMPDSVVS-IGTGAFM 285 (394)
T ss_dssp CCEEEECCSSSCBSSSCEEEECTTSCEEEEECCTTCCCSEEECCTTEEEECTTTTTTCSSCCEEECCTTCCE-ECTTTTT
T ss_pred cceecccccccccccceeecccccccccccccccccccceEEcCCcceEcccceeeecccccEEecccccce-ecCcccc
Confidence 333332211 111123345667788888888665433 4456777
Q ss_pred CCCCCCeEEecCCccccCcCccccc-cCCcEEEcccCcccccCChhhhccccccCCCcCccCCCCCcEEEccCCccCCcc
Q 040206 208 NSTRLSFLDVGNNSLSGPIPECLAN-STLEILDMRMNKFSGSLPQNICKKLCFGPLPPSLVNCQYLEVLDVGNNQIDDTF 286 (347)
Q Consensus 208 ~~~~L~~L~l~~~~~~~~~~~~~~~-~~L~~L~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~i~~~~ 286 (347)
.+.+|+.+.+.. .++......+.. .+|+.+.+..+ ++. + -..+|.+|.+|+.+.+..+ ++.+.
T Consensus 286 ~c~~L~~i~l~~-~i~~I~~~aF~~c~~L~~i~lp~~-v~~-I------------~~~aF~~C~~L~~i~ip~s-v~~I~ 349 (394)
T 4gt6_A 286 NCPALQDIEFSS-RITELPESVFAGCISLKSIDIPEG-ITQ-I------------LDDAFAGCEQLERIAIPSS-VTKIP 349 (394)
T ss_dssp TCTTCCEEECCT-TCCEECTTTTTTCTTCCEEECCTT-CCE-E------------CTTTTTTCTTCCEEEECTT-CCBCC
T ss_pred cccccccccCCC-cccccCceeecCCCCcCEEEeCCc-ccE-e------------hHhHhhCCCCCCEEEECcc-cCEEh
Confidence 888888888753 344444444443 68888888653 221 1 1246889999999999654 66667
Q ss_pred chhhhhccCCCEEEcccceee
Q 040206 287 LYWLDVLLQLQVLILRSNRFW 307 (347)
Q Consensus 287 ~~~~~~l~~L~~l~L~~n~~~ 307 (347)
...|.+|.+|+.+++.++...
T Consensus 350 ~~aF~~C~~L~~i~~~~~~~~ 370 (394)
T 4gt6_A 350 ESAFSNCTALNNIEYSGSRSQ 370 (394)
T ss_dssp GGGGTTCTTCCEEEESSCHHH
T ss_pred HhHhhCCCCCCEEEECCceee
Confidence 778999999999999887643
No 148
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=99.01 E-value=4e-08 Score=86.84 Aligned_cols=278 Identities=11% Similarity=0.175 Sum_probs=155.8
Q ss_pred ceEEEecCCCCCCCC-hhhhcCCCccEEeccCCc---ccccCChhhhhcCCCcccEEEcCCCcCCCCCC---CCCCCCcE
Q 040206 2 TIKTQVKTCNISEFP-DILRTQHQLEWLDLSKNQ---IRGRIPSWMWDIGVHTLQFLILSQNVLTSIDH---LPWKNLQY 74 (347)
Q Consensus 2 l~~l~l~~~~~~~~~-~~~~~~~~L~~L~l~~~~---~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~---~~~~~L~~ 74 (347)
|+.+.+... ++.+. .+|.+|.+|+.+.+..+. ++ .+....+. +|..|+.+.+..+ ++.++. ..+.+|+.
T Consensus 66 L~sI~iP~s-vt~Ig~~AF~~C~~L~~i~~~~n~p~~l~-~Ig~~aF~-~c~~L~~i~~~~~-~~~I~~~aF~~c~~L~~ 141 (394)
T 4gt6_A 66 LTSVQIPDT-VTEIGSNAFYNCTSLKRVTIQDNKPSCVK-KIGRQAFM-FCSELTDIPILDS-VTEIDSEAFHHCEELDT 141 (394)
T ss_dssp CCEEEECTT-CCEECTTTTTTCTTCCEEEEGGGCCCCCC-EECTTTTT-TCTTCCBCGGGTT-CSEECTTTTTTCTTCCE
T ss_pred CEEEEECCC-eeEEhHHHhhCCccCceEeecCCCCCeee-Eechhhch-hcccceeeccCCc-cceehhhhhhhhccccc
Confidence 556666543 55554 489999999999987652 44 44444444 5677777766543 333333 44566777
Q ss_pred EEccCCC--CCccCCCCCCCccEEEcccCcccccCCccccCCCCccEEEcccCcccccCCcccCCc--------------
Q 040206 75 LTLDSNL--LQGSLPDLPPHMVQLLISNNSLTGEIPSSFCNLSSIQYLNLSNNSLSGQIPQCLGNS-------------- 138 (347)
Q Consensus 75 L~l~~~~--~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~-------------- 138 (347)
+.+...- +.......+..|+.+.+..+ +..+...+|.. ..|+.+.+..+........+..+.
T Consensus 142 i~lp~~~~~I~~~~F~~c~~L~~i~~~~~-~~~I~~~aF~~-~~l~~i~ip~~~~~i~~~af~~c~~l~~~~~~~~~~~~ 219 (394)
T 4gt6_A 142 VTIPEGVTSVADGMFSYCYSLHTVTLPDS-VTAIEERAFTG-TALTQIHIPAKVTRIGTNAFSECFALSTITSDSESYPA 219 (394)
T ss_dssp EECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTT-CCCSEEEECTTCCEECTTTTTTCTTCCEEEECCSSSCB
T ss_pred ccccceeeeecccceecccccccccccce-eeEeccccccc-cceeEEEECCcccccccchhhhccccceeccccccccc
Confidence 7765432 11222233355555555443 22122233322 344444443321110000011111
Q ss_pred -----------------------cccEEECCCCccccccCccCCCCCCccEEEccCCcccCCCccccccCCCCcEEEccC
Q 040206 139 -----------------------TLETLDLGMNNFQGSIPQTNAKGCNLTSLRLSGNHLEGPLPPSLINCVNLQFLDVGN 195 (347)
Q Consensus 139 -----------------------~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~ 195 (347)
.+..+.+.. .+.......|..+..|+.+.+...-.. ....++..++.|+.+.+..
T Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip~-~v~~i~~~aF~~c~~L~~i~lp~~~~~-I~~~aF~~c~~L~~i~l~~ 297 (394)
T 4gt6_A 220 IDNVLYEKSANGDYALIRYPSQREDPAFKIPN-GVARIETHAFDSCAYLASVKMPDSVVS-IGTGAFMNCPALQDIEFSS 297 (394)
T ss_dssp SSSCEEEECTTSCEEEEECCTTCCCSEEECCT-TEEEECTTTTTTCSSCCEEECCTTCCE-ECTTTTTTCTTCCEEECCT
T ss_pred ccceeecccccccccccccccccccceEEcCC-cceEcccceeeecccccEEecccccce-ecCcccccccccccccCCC
Confidence 122222222 122234456778889999998765433 5567788999999999974
Q ss_pred CcccCCCCccccCCCCCCeEEecCCccccCcCccccc-cCCcEEEcccCcccccCChhhhccccccCCCcCccCCCCCcE
Q 040206 196 NNLSGPIPECLGNSTRLSFLDVGNNSLSGPIPECLAN-STLEILDMRMNKFSGSLPQNICKKLCFGPLPPSLVNCQYLEV 274 (347)
Q Consensus 196 n~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~-~~L~~L~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~ 274 (347)
.+......+|..|.+|+.+.+..+ ++......+.. .+|+.+.+..+ ++. +. ..+|.+|.+|+.
T Consensus 298 -~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~s-v~~-I~------------~~aF~~C~~L~~ 361 (394)
T 4gt6_A 298 -RITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLERIAIPSS-VTK-IP------------ESAFSNCTALNN 361 (394)
T ss_dssp -TCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEECTT-CCB-CC------------GGGGTTCTTCCE
T ss_pred -cccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEEEECcc-cCE-Eh------------HhHhhCCCCCCE
Confidence 344455678899999999999764 55455555554 78999998654 331 11 246899999999
Q ss_pred EEccCCccCCccchhhhhccCCCEEEccccee
Q 040206 275 LDVGNNQIDDTFLYWLDVLLQLQVLILRSNRF 306 (347)
Q Consensus 275 L~L~~n~i~~~~~~~~~~l~~L~~l~L~~n~~ 306 (347)
+++.++... ...+..+.+|+.+.+..+.+
T Consensus 362 i~~~~~~~~---~~~~~~~~~L~~i~i~~~~~ 390 (394)
T 4gt6_A 362 IEYSGSRSQ---WNAISTDSGLQNLPVAPGSI 390 (394)
T ss_dssp EEESSCHHH---HHTCBCCCCC----------
T ss_pred EEECCceee---hhhhhccCCCCEEEeCCCCE
Confidence 999988643 23456678888888765543
No 149
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.98 E-value=1.4e-09 Score=94.58 Aligned_cols=131 Identities=18% Similarity=0.174 Sum_probs=94.4
Q ss_pred cEEEccCC-cccCCCccccccCCCCcEEEccC-CcccCCCCccccCCCCCCeEEecCCccccCcCcccc-ccCCcEEEcc
Q 040206 165 TSLRLSGN-HLEGPLPPSLINCVNLQFLDVGN-NNLSGPIPECLGNSTRLSFLDVGNNSLSGPIPECLA-NSTLEILDMR 241 (347)
Q Consensus 165 ~~L~l~~~-~~~~~~~~~l~~~~~L~~L~l~~-n~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~-~~~L~~L~L~ 241 (347)
..++.+++ .++ .+|. +..+++|+.|++++ |.+.+..+..|..+++|+.|++++|.+++..+..+. .++|+.|+|+
T Consensus 11 ~~v~~~~~n~l~-~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~ 88 (347)
T 2ifg_A 11 SGLRCTRDGALD-SLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLS 88 (347)
T ss_dssp SCEECCSSCCCT-TTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECC
T ss_pred CEEEcCCCCCCC-ccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCC
Confidence 35677877 777 5677 88899999999996 999877778899999999999999999887776544 4899999999
Q ss_pred cCcccccCChhhhccccccCCCc-CccCCCCCcEEEccCCccCCccc-hhhhhccCCCEEEcccceeecccCC
Q 040206 242 MNKFSGSLPQNICKKLCFGPLPP-SLVNCQYLEVLDVGNNQIDDTFL-YWLDVLLQLQVLILRSNRFWGPIGK 312 (347)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~L~~L~L~~n~i~~~~~-~~~~~l~~L~~l~L~~n~~~~~~~~ 312 (347)
+|.+.+ +|. .+..++ |+.|+|.+|.+..... .++..+.......+..+.++...|.
T Consensus 89 ~N~l~~--------------~~~~~~~~~~-L~~l~l~~N~~~c~c~l~~~~~~~~~~~~~l~~~~~~C~~~~ 146 (347)
T 2ifg_A 89 FNALES--------------LSWKTVQGLS-LQELVLSGNPLHCSCALRWLQRWEEEGLGGVPEQKLQCHGQG 146 (347)
T ss_dssp SSCCSC--------------CCSTTTCSCC-CCEEECCSSCCCCCGGGHHHHHHHHTTCSSCGGGCCCCSSSS
T ss_pred CCccce--------------eCHHHcccCC-ceEEEeeCCCccCCCccHHHHHHHHhCcccccccCCCCCCCh
Confidence 999984 332 334444 9999999999875332 3344433333334444555544444
No 150
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.97 E-value=2.1e-10 Score=99.61 Aligned_cols=156 Identities=16% Similarity=0.149 Sum_probs=72.6
Q ss_pred CccccEEECCCCccccccCccCCCCCCccEEEccCCcccCCCccccc--cCCCCcEEEccC--CcccCC-----CCccc-
Q 040206 137 NSTLETLDLGMNNFQGSIPQTNAKGCNLTSLRLSGNHLEGPLPPSLI--NCVNLQFLDVGN--NNLSGP-----IPECL- 206 (347)
Q Consensus 137 ~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~--~~~~L~~L~l~~--n~~~~~-----~~~~l- 206 (347)
+++|+.|.++++.-. ..+. + ..++|++|.+..+.++......+. .+++|+.|+++. +...+. +...+
T Consensus 171 ~P~L~~L~L~g~~~l-~l~~-~-~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~ 247 (362)
T 2ra8_A 171 MPLLNNLKIKGTNNL-SIGK-K-PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFS 247 (362)
T ss_dssp CTTCCEEEEECCBTC-BCCS-C-BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSC
T ss_pred CCCCcEEEEeCCCCc-eecc-c-cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHHHHh
Confidence 345666666554211 1222 2 255666666666655432222232 456666666642 111100 01111
Q ss_pred -cCCCCCCeEEecCCccccCcCccc----cccCCcEEEcccCcccccCChhhhccccccCCCcCccCCCCCcEEEccCCc
Q 040206 207 -GNSTRLSFLDVGNNSLSGPIPECL----ANSTLEILDMRMNKFSGSLPQNICKKLCFGPLPPSLVNCQYLEVLDVGNNQ 281 (347)
Q Consensus 207 -~~~~~L~~L~l~~~~~~~~~~~~~----~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~ 281 (347)
..+++|+.|++.+|.+.+.....+ ..++|+.|+|++|.+.+.++.. ++..+..+++|++|++++|.
T Consensus 248 ~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~---------L~~~L~~l~~L~~L~L~~n~ 318 (362)
T 2ra8_A 248 KDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARL---------LLDHVDKIKHLKFINMKYNY 318 (362)
T ss_dssp TTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHH---------HHTTHHHHTTCSEEECCSBB
T ss_pred cCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHH---------HHhhcccCCcceEEECCCCc
Confidence 235666666666666543222111 2356666666666665543332 12223445666666666666
Q ss_pred cCCccchhhhhccCCCEEEcccce
Q 040206 282 IDDTFLYWLDVLLQLQVLILRSNR 305 (347)
Q Consensus 282 i~~~~~~~~~~l~~L~~l~L~~n~ 305 (347)
+++.....+...- ...+++++++
T Consensus 319 i~d~~~~~l~~al-g~~~~~~~~~ 341 (362)
T 2ra8_A 319 LSDEMKKELQKSL-PMKIDVSDSQ 341 (362)
T ss_dssp CCHHHHHHHHHHC-CSEEECCSBC
T ss_pred CCHHHHHHHHHHc-CCEEEecCCc
Confidence 6544443333311 3455666555
No 151
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.96 E-value=2.7e-09 Score=92.77 Aligned_cols=102 Identities=18% Similarity=0.105 Sum_probs=60.0
Q ss_pred EEcccC-cccccCCcccCCccccEEECCC-CccccccCccCCCCCCccEEEccCCcccCCCccccccCCCCcEEEccCCc
Q 040206 120 LNLSNN-SLSGQIPQCLGNSTLETLDLGM-NNFQGSIPQTNAKGCNLTSLRLSGNHLEGPLPPSLINCVNLQFLDVGNNN 197 (347)
Q Consensus 120 L~l~~~-~~~~~~~~~~~~~~L~~L~l~~-~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~ 197 (347)
++.+++ .+..++. .....+|+.|++++ |.+....+..+..+++|+.|++++|.++...+..|..+++|+.|+|++|.
T Consensus 13 v~~~~~n~l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~ 91 (347)
T 2ifg_A 13 LRCTRDGALDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNA 91 (347)
T ss_dssp EECCSSCCCTTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSC
T ss_pred EEcCCCCCCCccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCc
Confidence 455555 5554333 33445666666664 66654444556666666666666666665555566666666666666666
Q ss_pred ccCCCCccccCCCCCCeEEecCCccc
Q 040206 198 LSGPIPECLGNSTRLSFLDVGNNSLS 223 (347)
Q Consensus 198 ~~~~~~~~l~~~~~L~~L~l~~~~~~ 223 (347)
+.+..+..+..++ |+.|++.+|.+.
T Consensus 92 l~~~~~~~~~~~~-L~~l~l~~N~~~ 116 (347)
T 2ifg_A 92 LESLSWKTVQGLS-LQELVLSGNPLH 116 (347)
T ss_dssp CSCCCSTTTCSCC-CCEEECCSSCCC
T ss_pred cceeCHHHcccCC-ceEEEeeCCCcc
Confidence 6644444444444 666666666654
No 152
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=98.87 E-value=5.2e-07 Score=79.25 Aligned_cols=132 Identities=14% Similarity=0.100 Sum_probs=82.6
Q ss_pred CccCCCCCCccEEEccCCcccCCCccccccCCCCcEEEccCCcccCCCCccccCCCCCCeEEecCCccccCcCcccc-cc
Q 040206 155 PQTNAKGCNLTSLRLSGNHLEGPLPPSLINCVNLQFLDVGNNNLSGPIPECLGNSTRLSFLDVGNNSLSGPIPECLA-NS 233 (347)
Q Consensus 155 ~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~-~~ 233 (347)
...+.....++.+.+..+ +......++..+..|+.+.+..+ +......++..+.+|+.+.+..+ +.......+. ..
T Consensus 210 ~~~f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~ 286 (379)
T 4h09_A 210 AYGFSYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCS 286 (379)
T ss_dssp TTTTTTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCT
T ss_pred ecccccccccceeeeccc-eeEEccccccCCccceEEEcCCC-ccEeCccccceeehhcccccccc-ceecccccccccc
Confidence 344555566777766543 22244456677778888877665 33344556777788888877543 3323333333 36
Q ss_pred CCcEEEcccCcccccCChhhhccccccCCCcCccCCCCCcEEEccCCccCCccchhhhhccCCCEEEccc
Q 040206 234 TLEILDMRMNKFSGSLPQNICKKLCFGPLPPSLVNCQYLEVLDVGNNQIDDTFLYWLDVLLQLQVLILRS 303 (347)
Q Consensus 234 ~L~~L~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~l~L~~ 303 (347)
+|+.+.+.++.+... -..+|.+|.+|+.+.|..+ ++.+....|.+|.+|+.+.+..
T Consensus 287 ~L~~i~l~~~~i~~I-------------~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip~ 342 (379)
T 4h09_A 287 NLTKVVMDNSAIETL-------------EPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISYPK 342 (379)
T ss_dssp TCCEEEECCTTCCEE-------------CTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCCCT
T ss_pred cccccccccccccee-------------hhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEECC
Confidence 788888877666521 1236778888888888654 5555566778888888887754
No 153
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.85 E-value=3.4e-10 Score=88.94 Aligned_cols=121 Identities=19% Similarity=0.136 Sum_probs=83.4
Q ss_pred cccccCCCCcEEEccCC-cccC----CCCccccCCCCCCeEEecCCccccCcCcccc-----ccCCcEEEcccCcccccC
Q 040206 180 PSLINCVNLQFLDVGNN-NLSG----PIPECLGNSTRLSFLDVGNNSLSGPIPECLA-----NSTLEILDMRMNKFSGSL 249 (347)
Q Consensus 180 ~~l~~~~~L~~L~l~~n-~~~~----~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~-----~~~L~~L~L~~~~~~~~~ 249 (347)
..+...+.|++|++++| .+.+ .+...+...++|++|++++|.+.......+. .+.|++|+|++|.+.+.+
T Consensus 30 ~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g 109 (185)
T 1io0_A 30 RIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSG 109 (185)
T ss_dssp HHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHH
T ss_pred HHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHH
Confidence 34556677888888877 6653 2334456677888888888887654433322 267888888888888755
Q ss_pred ChhhhccccccCCCcCccCCCCCcEEEc--cCCccCCccc----hhhhhccCCCEEEcccceeecc
Q 040206 250 PQNICKKLCFGPLPPSLVNCQYLEVLDV--GNNQIDDTFL----YWLDVLLQLQVLILRSNRFWGP 309 (347)
Q Consensus 250 ~~~~~~~~~~~~l~~~~~~~~~L~~L~L--~~n~i~~~~~----~~~~~l~~L~~l~L~~n~~~~~ 309 (347)
...+ ...+...+.|++|+| ++|.+++... ..+...++|++|+|++|.+...
T Consensus 110 ~~~l---------~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~~~ 166 (185)
T 1io0_A 110 ILAL---------VEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQGPR 166 (185)
T ss_dssp HHHH---------HHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHHHH
T ss_pred HHHH---------HHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCChH
Confidence 4433 335667788999999 8899876443 3445568999999999987643
No 154
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.82 E-value=4.3e-09 Score=91.40 Aligned_cols=147 Identities=14% Similarity=0.068 Sum_probs=99.5
Q ss_pred ccCCCCCCccEEEccCCcccCCCccccccCCCCcEEEccCCcccCCCCcccc--CCCCCCeEEecC--CccccC-----c
Q 040206 156 QTNAKGCNLTSLRLSGNHLEGPLPPSLINCVNLQFLDVGNNNLSGPIPECLG--NSTRLSFLDVGN--NSLSGP-----I 226 (347)
Q Consensus 156 ~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~--~~~~L~~L~l~~--~~~~~~-----~ 226 (347)
..+..+|+|+.|.+.++.-. ..+. + .+++|++|++..+.+.......+. .+++|+.|+++. +...+. .
T Consensus 166 ~ll~~~P~L~~L~L~g~~~l-~l~~-~-~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l 242 (362)
T 2ra8_A 166 PVLDAMPLLNNLKIKGTNNL-SIGK-K-PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVF 242 (362)
T ss_dssp HHHHTCTTCCEEEEECCBTC-BCCS-C-BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGT
T ss_pred HHHhcCCCCcEEEEeCCCCc-eecc-c-cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHH
Confidence 44566789999999887311 2222 3 378999999999887643333443 789999999863 221111 1
Q ss_pred Cccc---cccCCcEEEcccCcccccCChhhhccccccCCCcCccCCCCCcEEEccCCccCCccc----hhhhhccCCCEE
Q 040206 227 PECL---ANSTLEILDMRMNKFSGSLPQNICKKLCFGPLPPSLVNCQYLEVLDVGNNQIDDTFL----YWLDVLLQLQVL 299 (347)
Q Consensus 227 ~~~~---~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~i~~~~~----~~~~~l~~L~~l 299 (347)
...+ ..++|+.|+|++|.+.+.++..+.. ...+++|++|+|+.|.+++... ..+..+++|+.|
T Consensus 243 ~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~----------a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L 312 (362)
T 2ra8_A 243 RPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLE----------SDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFI 312 (362)
T ss_dssp GGGSCTTTCTTCCEEEEESCTTHHHHHHHHHH----------CSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEE
T ss_pred HHHHhcCCCCCcCEEeCCCCCCchHHHHHHHh----------CccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEE
Confidence 1112 2489999999999998654443211 1247899999999999987433 334678999999
Q ss_pred EcccceeecccCCccc
Q 040206 300 ILRSNRFWGPIGKLRS 315 (347)
Q Consensus 300 ~L~~n~~~~~~~~~~~ 315 (347)
++++|.+++..-..++
T Consensus 313 ~L~~n~i~d~~~~~l~ 328 (362)
T 2ra8_A 313 NMKYNYLSDEMKKELQ 328 (362)
T ss_dssp ECCSBBCCHHHHHHHH
T ss_pred ECCCCcCCHHHHHHHH
Confidence 9999998865444333
No 155
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=98.62 E-value=8.6e-06 Score=71.42 Aligned_cols=262 Identities=12% Similarity=0.081 Sum_probs=148.0
Q ss_pred hhhcCCCccEEeccCCcccccCChhhhhcCCCcccEEEcCCCcCCCCCCCCCC--CCcEEEccCCCCCccCCCCC--CCc
Q 040206 18 ILRTQHQLEWLDLSKNQIRGRIPSWMWDIGVHTLQFLILSQNVLTSIDHLPWK--NLQYLTLDSNLLQGSLPDLP--PHM 93 (347)
Q Consensus 18 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~--~L~~L~l~~~~~~~~~~~~~--~~L 93 (347)
++....+|+.+.+.. .++ .++...+. +|.+|+.+.|..+ ++.++...|. +|+.+.+..+ +.......+ .+|
T Consensus 41 ~~~~~~~i~~v~ip~-~vt-~Ig~~aF~-~C~~L~~I~lp~~-v~~Ig~~aF~~c~l~~i~~~~~-l~~I~~~aF~~~~L 115 (379)
T 4h09_A 41 WYKDRDRISEVRVNS-GIT-SIGEANFN-SCYNMTKVTVAST-VTSIGDGAFADTKLQSYTGMER-VKKFGDYVFQGTDL 115 (379)
T ss_dssp TGGGGGGCSEEEECT-TEE-EECTTTTT-TCTTCCEEEECTT-CCEECTTTTTTCCCCEEEECTT-CCEECTTTTTTCCC
T ss_pred ccccccCCEEEEeCC-Ccc-ChHHHHhh-CCCCCCEEEeCCc-ceEechhhhcCCCCceEECCce-eeEeccceeccCCc
Confidence 466778888888854 455 45555555 6788888888654 6666553332 4555554332 221111111 356
Q ss_pred cEEEcccCcccccCCccccCCCCccEEEcccCcccccCCc-ccCCccccEEECCCCccc------------cccCccCCC
Q 040206 94 VQLLISNNSLTGEIPSSFCNLSSIQYLNLSNNSLSGQIPQ-CLGNSTLETLDLGMNNFQ------------GSIPQTNAK 160 (347)
Q Consensus 94 ~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~-~~~~~~L~~L~l~~~~~~------------~~~~~~~~~ 160 (347)
+.+.+..+-.. +...+|.+. ++....+..+ +...... +..+..++.+.+...... ......+..
T Consensus 116 ~~i~lp~~~~~-i~~~~F~~~-~l~~~~~~~~-v~~i~~~~f~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (379)
T 4h09_A 116 DDFEFPGATTE-IGNYIFYNS-SVKRIVIPKS-VTTIKDGIGYKAENLEKIEVSSNNKNYVAENYVLYNKNKTILESYPA 192 (379)
T ss_dssp SEEECCTTCCE-ECTTTTTTC-CCCEEEECTT-CCEECSCTTTTCTTCCEEEECTTCSSEEEETTEEEETTSSEEEECCT
T ss_pred ccccCCCcccc-ccccccccc-eeeeeeccce-eeccccchhcccccccccccccccceeecccceecccccceeccccc
Confidence 66666544222 333344433 4555554433 2212222 223445555544432211 011122333
Q ss_pred CCCccEEEccCCcccCCCccccccCCCCcEEEccCCcccCCCCccccCCCCCCeEEecCCccccCcCccccc-cCCcEEE
Q 040206 161 GCNLTSLRLSGNHLEGPLPPSLINCVNLQFLDVGNNNLSGPIPECLGNSTRLSFLDVGNNSLSGPIPECLAN-STLEILD 239 (347)
Q Consensus 161 ~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~-~~L~~L~ 239 (347)
...+..+.+...... ....++..+..++.+.+..+ +......++..+..|+.+.+..+ ++......+.. ..|+.+.
T Consensus 193 ~~~~~~~~~~~~~~~-i~~~~f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~ 269 (379)
T 4h09_A 193 AKTGTEFTIPSTVKT-VTAYGFSYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLN 269 (379)
T ss_dssp TCCCSEEECCTTCCE-ECTTTTTTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEE
T ss_pred cccccccccccceeE-Eeecccccccccceeeeccc-eeEEccccccCCccceEEEcCCC-ccEeCccccceeehhcccc
Confidence 344555554433221 33345666778888887654 33244567778889999988765 44344443333 6788888
Q ss_pred cccCcccccCChhhhccccccCCCcCccCCCCCcEEEccCCccCCccchhhhhccCCCEEEcccc
Q 040206 240 MRMNKFSGSLPQNICKKLCFGPLPPSLVNCQYLEVLDVGNNQIDDTFLYWLDVLLQLQVLILRSN 304 (347)
Q Consensus 240 L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~~L~~l~L~~n 304 (347)
+..+ +.. + -..+|.+|.+|+.+.+.++.+..+....|.++.+|+.++|..+
T Consensus 270 l~~~-i~~-i------------~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~ 320 (379)
T 4h09_A 270 FYAK-VKT-V------------PYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA 320 (379)
T ss_dssp ECCC-CSE-E------------CTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT
T ss_pred cccc-cee-c------------cccccccccccccccccccccceehhhhhcCCCCCCEEEcCcc
Confidence 7543 221 1 1246889999999999999888777888999999999999643
No 156
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.53 E-value=4.3e-09 Score=82.62 Aligned_cols=120 Identities=18% Similarity=0.192 Sum_probs=81.5
Q ss_pred ccCCCCCCccEEEccCC-cccCC----CccccccCCCCcEEEccCCcccCC----CCccccCCCCCCeEEecCCccccCc
Q 040206 156 QTNAKGCNLTSLRLSGN-HLEGP----LPPSLINCVNLQFLDVGNNNLSGP----IPECLGNSTRLSFLDVGNNSLSGPI 226 (347)
Q Consensus 156 ~~~~~~~~L~~L~l~~~-~~~~~----~~~~l~~~~~L~~L~l~~n~~~~~----~~~~l~~~~~L~~L~l~~~~~~~~~ 226 (347)
..+...+.|++|++++| .+... +...+...+.|++|++++|.+.+. +...+...++|++|++++|.+.+..
T Consensus 30 ~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g 109 (185)
T 1io0_A 30 RIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSG 109 (185)
T ss_dssp HHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHH
T ss_pred HHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHH
Confidence 34555667777777777 66532 233455667888888888887632 2344566678888888888887643
Q ss_pred Cccc-----cccCCcEEEc--ccCcccccCChhhhccccccCCCcCccCCCCCcEEEccCCccCC
Q 040206 227 PECL-----ANSTLEILDM--RMNKFSGSLPQNICKKLCFGPLPPSLVNCQYLEVLDVGNNQIDD 284 (347)
Q Consensus 227 ~~~~-----~~~~L~~L~L--~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~i~~ 284 (347)
...+ ..+.|++|+| ++|.+.+.+...+ ...+..++.|++|++++|.+..
T Consensus 110 ~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l---------~~~L~~n~~L~~L~L~~n~i~~ 165 (185)
T 1io0_A 110 ILALVEALQSNTSLIELRIDNQSQPLGNNVEMEI---------ANMLEKNTTLLKFGYHFTQQGP 165 (185)
T ss_dssp HHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHH---------HHHHHHCSSCCEEECCCSSHHH
T ss_pred HHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHH---------HHHHHhCCCcCEEeccCCCCCh
Confidence 3222 2267999999 7888887654433 2346677889999999998864
No 157
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.31 E-value=1.7e-07 Score=71.74 Aligned_cols=84 Identities=8% Similarity=0.031 Sum_probs=53.0
Q ss_pred CCCCcEEEccCCcccCCCCccccCCCCCCeEEecCCc-cccCcCccccc-----cCCcEEEcccC-cccccCChhhhccc
Q 040206 185 CVNLQFLDVGNNNLSGPIPECLGNSTRLSFLDVGNNS-LSGPIPECLAN-----STLEILDMRMN-KFSGSLPQNICKKL 257 (347)
Q Consensus 185 ~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~~~-~~~~~~~~~~~-----~~L~~L~L~~~-~~~~~~~~~~~~~~ 257 (347)
-.+|++|++++|.+++.....+..+++|+.|++++|. +++.....+.. ++|++|++++| .+++.+-.
T Consensus 60 ~~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~------ 133 (176)
T 3e4g_A 60 KYKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGII------ 133 (176)
T ss_dssp CCCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHH------
T ss_pred CceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHH------
Confidence 3468888888888776555666778888888888874 65544443332 25677777766 36543222
Q ss_pred cccCCCcCccCCCCCcEEEccCCc
Q 040206 258 CFGPLPPSLVNCQYLEVLDVGNNQ 281 (347)
Q Consensus 258 ~~~~l~~~~~~~~~L~~L~L~~n~ 281 (347)
.+..|++|++|++++|.
T Consensus 134 -------~L~~~~~L~~L~L~~c~ 150 (176)
T 3e4g_A 134 -------ALHHFRNLKYLFLSDLP 150 (176)
T ss_dssp -------HGGGCTTCCEEEEESCT
T ss_pred -------HHhcCCCCCEEECCCCC
Confidence 23456667777776664
No 158
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.25 E-value=4.1e-07 Score=69.65 Aligned_cols=87 Identities=8% Similarity=0.034 Sum_probs=54.6
Q ss_pred CCCCeEEecCCccccCcCcccc-ccCCcEEEcccC-cccccCChhhhccccccCCCcCccCCCCCcEEEccCCc-cCCcc
Q 040206 210 TRLSFLDVGNNSLSGPIPECLA-NSTLEILDMRMN-KFSGSLPQNICKKLCFGPLPPSLVNCQYLEVLDVGNNQ-IDDTF 286 (347)
Q Consensus 210 ~~L~~L~l~~~~~~~~~~~~~~-~~~L~~L~L~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~-i~~~~ 286 (347)
..|+.|++++|.++......+. .++|+.|+|++| .+++..-..+.. .-..+++|++|+|++|. |++..
T Consensus 61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~---------~~~~~~~L~~L~Ls~C~~ITD~G 131 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQ---------LENLQKSMLEMEIISCGNVTDKG 131 (176)
T ss_dssp CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHT---------CHHHHHHCCEEEEESCTTCCHHH
T ss_pred ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHh---------cccccCCCCEEEcCCCCcCCHHH
Confidence 4677788888777665544433 377888888877 466543222110 00013467888888774 77666
Q ss_pred chhhhhccCCCEEEcccce
Q 040206 287 LYWLDVLLQLQVLILRSNR 305 (347)
Q Consensus 287 ~~~~~~l~~L~~l~L~~n~ 305 (347)
...+..+++|+.|++++|+
T Consensus 132 l~~L~~~~~L~~L~L~~c~ 150 (176)
T 3e4g_A 132 IIALHHFRNLKYLFLSDLP 150 (176)
T ss_dssp HHHGGGCTTCCEEEEESCT
T ss_pred HHHHhcCCCCCEEECCCCC
Confidence 6667777888888888776
No 159
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.95 E-value=4.5e-06 Score=65.13 Aligned_cols=117 Identities=15% Similarity=0.179 Sum_probs=77.8
Q ss_pred cccCCCCcEEEccCC-cccC----CCCccccCCCCCCeEEecCCccccCcCccccc-----cCCcEEEcccCcccccCCh
Q 040206 182 LINCVNLQFLDVGNN-NLSG----PIPECLGNSTRLSFLDVGNNSLSGPIPECLAN-----STLEILDMRMNKFSGSLPQ 251 (347)
Q Consensus 182 l~~~~~L~~L~l~~n-~~~~----~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~-----~~L~~L~L~~~~~~~~~~~ 251 (347)
+..-+.|++|+++++ .+.+ .+..++...+.|+.|++++|.+.+.....++. ..|+.|+|++|.|.+.+..
T Consensus 37 l~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ 116 (197)
T 1pgv_A 37 REDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLA 116 (197)
T ss_dssp HTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHH
T ss_pred HhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHH
Confidence 344567788888774 5542 23445667778888888888877655544443 6788888888888876655
Q ss_pred hhhccccccCCCcCccCCCCCcEEEccCC---ccCCc----cchhhhhccCCCEEEcccceee
Q 040206 252 NICKKLCFGPLPPSLVNCQYLEVLDVGNN---QIDDT----FLYWLDVLLQLQVLILRSNRFW 307 (347)
Q Consensus 252 ~~~~~~~~~~l~~~~~~~~~L~~L~L~~n---~i~~~----~~~~~~~l~~L~~l~L~~n~~~ 307 (347)
.+++ ++...+.|++|+|++| .+.+. ..+.+..-+.|+.|+++.|...
T Consensus 117 ala~---------aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~~g 170 (197)
T 1pgv_A 117 RLLR---------STLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASME 170 (197)
T ss_dssp HHHH---------HTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCCHH
T ss_pred HHHH---------HHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCCcc
Confidence 4433 4555667899999865 34432 2344556678999998877654
No 160
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.90 E-value=7.2e-06 Score=67.58 Aligned_cols=75 Identities=25% Similarity=0.229 Sum_probs=41.6
Q ss_pred CCcccEEEcCCCcCCCCCC-----CCCCCCcEEEccCCCCCcc-CCCCCC--CccEEEcccCcccccCC-------cccc
Q 040206 48 VHTLQFLILSQNVLTSIDH-----LPWKNLQYLTLDSNLLQGS-LPDLPP--HMVQLLISNNSLTGEIP-------SSFC 112 (347)
Q Consensus 48 ~~~L~~L~l~~~~l~~~~~-----~~~~~L~~L~l~~~~~~~~-~~~~~~--~L~~L~l~~~~~~~~~~-------~~~~ 112 (347)
+++|++|+|++|.++.++. ..+++|+.|++++|.+.+. ....+. +|++|++.+|.+....+ ..+.
T Consensus 169 l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~il~ 248 (267)
T 3rw6_A 169 IPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLCDTFRDQSTYISAIRE 248 (267)
T ss_dssp CTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGGGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHHHHHH
T ss_pred CCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCchhhhhcccCCcceEEccCCcCccccCcchhHHHHHHH
Confidence 3556666666665555442 2355666666666655532 111112 66677777776654332 2356
Q ss_pred CCCCccEEEc
Q 040206 113 NLSSIQYLNL 122 (347)
Q Consensus 113 ~l~~L~~L~l 122 (347)
.+++|+.|+-
T Consensus 249 ~~P~L~~LDg 258 (267)
T 3rw6_A 249 RFPKLLRLDG 258 (267)
T ss_dssp HCTTCCEESS
T ss_pred HCcccCeECC
Confidence 6788888863
No 161
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.86 E-value=1.4e-05 Score=65.89 Aligned_cols=66 Identities=18% Similarity=0.281 Sum_probs=42.2
Q ss_pred cCCcEEEcccCcccccCChhhhccccccCCCcCccCCCCCcEEEccCCccCCccchhhhhcc--CCCEEEcccceeeccc
Q 040206 233 STLEILDMRMNKFSGSLPQNICKKLCFGPLPPSLVNCQYLEVLDVGNNQIDDTFLYWLDVLL--QLQVLILRSNRFWGPI 310 (347)
Q Consensus 233 ~~L~~L~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~i~~~~~~~~~~l~--~L~~l~L~~n~~~~~~ 310 (347)
++|+.|+|++|.+.+. ..++..+..+++|+.|+|++|.+.+. ..+..+. +|++|+|++|++.+.+
T Consensus 170 ~~L~~L~Ls~N~l~~l-----------~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~ 236 (267)
T 3rw6_A 170 PELLSLNLSNNRLYRL-----------DDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTF 236 (267)
T ss_dssp TTCCEEECTTSCCCCC-----------GGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGC
T ss_pred CCCCEEECCCCCCCCC-----------ccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCcccc
Confidence 5677777777777641 11333455677788888888877754 2233333 7788888888877655
Q ss_pred C
Q 040206 311 G 311 (347)
Q Consensus 311 ~ 311 (347)
|
T Consensus 237 ~ 237 (267)
T 3rw6_A 237 R 237 (267)
T ss_dssp S
T ss_pred C
Confidence 5
No 162
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.43 E-value=2.5e-05 Score=60.98 Aligned_cols=93 Identities=17% Similarity=0.134 Sum_probs=69.0
Q ss_pred CccccCCCCCCeEEecCC-ccccCcCcccc-----ccCCcEEEcccCcccccCChhhhccccccCCCcCccCCCCCcEEE
Q 040206 203 PECLGNSTRLSFLDVGNN-SLSGPIPECLA-----NSTLEILDMRMNKFSGSLPQNICKKLCFGPLPPSLVNCQYLEVLD 276 (347)
Q Consensus 203 ~~~l~~~~~L~~L~l~~~-~~~~~~~~~~~-----~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~L~~L~ 276 (347)
...+..-+.|+.|+++++ .+.......++ ...|+.|+|++|.+.+.+... +...+...+.|++|+
T Consensus 34 ~~ll~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~a---------lA~aL~~N~tL~~L~ 104 (197)
T 1pgv_A 34 NRLREDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARG---------LIELIETSPSLRVLN 104 (197)
T ss_dssp HHHHTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTT---------HHHHHHHCSSCCEEE
T ss_pred HHHHhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHH---------HHHHHhcCCccCeEe
Confidence 345567789999999985 77654433322 278999999999999865553 344566778999999
Q ss_pred ccCCccCCccch----hhhhccCCCEEEcccc
Q 040206 277 VGNNQIDDTFLY----WLDVLLQLQVLILRSN 304 (347)
Q Consensus 277 L~~n~i~~~~~~----~~~~l~~L~~l~L~~n 304 (347)
|++|.|++.... .+..-..|++|+|++|
T Consensus 105 L~~N~Ig~~Ga~ala~aL~~N~tL~~L~L~n~ 136 (197)
T 1pgv_A 105 VESNFLTPELLARLLRSTLVTQSIVEFKADNQ 136 (197)
T ss_dssp CCSSBCCHHHHHHHHHHTTTTCCCSEEECCCC
T ss_pred cCCCcCCHHHHHHHHHHHhhCCceeEEECCCC
Confidence 999999875444 3444578999999865
No 163
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=97.04 E-value=0.0013 Score=47.80 Aligned_cols=55 Identities=18% Similarity=0.254 Sum_probs=40.2
Q ss_pred EEEccCCCCC--ccCCCCCCCccEEEcccCcccccCCccccCCCCccEEEcccCccc
Q 040206 74 YLTLDSNLLQ--GSLPDLPPHMVQLLISNNSLTGEIPSSFCNLSSIQYLNLSNNSLS 128 (347)
Q Consensus 74 ~L~l~~~~~~--~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~ 128 (347)
.++.++++++ ..+..+++++++|+|++|.++.+.+..|..+++|+.|++.+|.+.
T Consensus 12 ~v~Cs~~~L~~~~vP~~lp~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAFPVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp EEECCSSCCCTTTSCSCCCTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred EEEeCCCCCccccCCCCCCcCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence 5666666666 555566677788888888877666677788888888888888664
No 164
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=97.02 E-value=0.0014 Score=47.55 Aligned_cols=39 Identities=21% Similarity=0.085 Sum_probs=32.8
Q ss_pred CCcEEEccCCccCCccchhhhhccCCCEEEcccceeecc
Q 040206 271 YLEVLDVGNNQIDDTFLYWLDVLLQLQVLILRSNRFWGP 309 (347)
Q Consensus 271 ~L~~L~L~~n~i~~~~~~~~~~l~~L~~l~L~~n~~~~~ 309 (347)
+|++|+|++|.|+......|..+++|+.|+|++|++..+
T Consensus 32 ~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~Cd 70 (130)
T 3rfe_A 32 DTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWRCD 70 (130)
T ss_dssp TCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCBCS
T ss_pred CCCEEECCCCcCCccChhhhhhccccCEEEecCCCeecc
Confidence 588889999988887778888888899999999988754
No 165
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=69.20 E-value=9.2 Score=25.68 Aligned_cols=45 Identities=13% Similarity=0.034 Sum_probs=26.2
Q ss_pred ccCCCccccccCCCCcEEEccCCcccCCCCccccCCCCCCeEEecC
Q 040206 174 LEGPLPPSLINCVNLQFLDVGNNNLSGPIPECLGNSTRLSFLDVGN 219 (347)
Q Consensus 174 ~~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~ 219 (347)
++.....+|.+|++|+.+.+..+ +......+|..|.+|+.+.+..
T Consensus 8 vt~I~~~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~ 52 (100)
T 2lz0_A 8 VVGMDKSLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILTG 52 (100)
T ss_dssp CCSSCSCTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEECC
T ss_pred cCEecHHHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEcC
Confidence 33444456666677777766654 2223445666677777666654
No 166
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=55.81 E-value=29 Score=23.14 Aligned_cols=45 Identities=22% Similarity=0.220 Sum_probs=24.9
Q ss_pred ccccCCccccCCCCccEEEcccCcccccCCccc-CCccccEEECCCC
Q 040206 103 LTGEIPSSFCNLSSIQYLNLSNNSLSGQIPQCL-GNSTLETLDLGMN 148 (347)
Q Consensus 103 ~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~-~~~~L~~L~l~~~ 148 (347)
++.+-..+|.++.+|+.+.+..+ ++.+....| ++.+|+.+.+...
T Consensus 8 vt~I~~~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~~ 53 (100)
T 2lz0_A 8 VVGMDKSLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILTGE 53 (100)
T ss_dssp CCSSCSCTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEECCS
T ss_pred cCEecHHHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEcCC
Confidence 44455556777777777777654 332333333 4556666666553
Done!