BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 040208
         (117 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q9SWR3|MMT1_WOLBI Methionine S-methyltransferase OS=Wollastonia biflora GN=MMT1 PE=1
           SV=1
          Length = 1088

 Score =  127 bits (320), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 60/86 (69%), Positives = 71/86 (82%)

Query: 9   QVKKIFEFLKNGFYEISSSLDLYFEDDLVADEKIPFLACLASALKEHSFFPYEPPAGTKR 68
           +VKKIFEFLKNGF++IS+SLDL FEDD VADEKIPFLA LA  LK+ S FPYEPP G KR
Sbjct: 376 EVKKIFEFLKNGFHDISNSLDLSFEDDSVADEKIPFLAYLAGVLKDGSRFPYEPPTGNKR 435

Query: 69  FQNLIADFMKMYHHIPLNADCQSLQP 94
           F++LIA FMK YHH+PL+ D  ++ P
Sbjct: 436 FRDLIASFMKTYHHVPLSTDNVAIFP 461


>sp|Q9LTB2|MMT1_ARATH Methionine S-methyltransferase OS=Arabidopsis thaliana GN=MMT1 PE=2
           SV=1
          Length = 1071

 Score =  121 bits (303), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 57/79 (72%), Positives = 66/79 (83%)

Query: 10  VKKIFEFLKNGFYEISSSLDLYFEDDLVADEKIPFLACLASALKEHSFFPYEPPAGTKRF 69
           VK IF+FLKNGF EIS+SLDL FED+ VADEKIPFLA LAS LK  S+FP+EPPAG+KRF
Sbjct: 368 VKIIFDFLKNGFQEISNSLDLSFEDETVADEKIPFLAYLASVLKNSSYFPFEPPAGSKRF 427

Query: 70  QNLIADFMKMYHHIPLNAD 88
            +LIA FM+ YH IP+N D
Sbjct: 428 CSLIAGFMRTYHRIPINQD 446


>sp|Q9MBC2|MMT1_HORVU Methionine S-methyltransferase OS=Hordeum vulgare GN=MMT1 PE=1 SV=1
          Length = 1088

 Score =  116 bits (291), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 57/80 (71%), Positives = 65/80 (81%)

Query: 9   QVKKIFEFLKNGFYEISSSLDLYFEDDLVADEKIPFLACLASALKEHSFFPYEPPAGTKR 68
           QVKKIFEFLK+GF+E+SSSLDL F+DD VADEKIPFLA LAS L+E+   P EPPAG   
Sbjct: 374 QVKKIFEFLKDGFHEVSSSLDLSFDDDSVADEKIPFLAYLASFLQENKSNPCEPPAGCLN 433

Query: 69  FQNLIADFMKMYHHIPLNAD 88
           F+NL+A FMK YHHIPL  D
Sbjct: 434 FRNLVAGFMKSYHHIPLTPD 453


>sp|Q8W519|MMT1_MAIZE Methionine S-methyltransferase OS=Zea mays GN=MMT1 PE=2 SV=2
          Length = 1091

 Score =  114 bits (284), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 56/80 (70%), Positives = 64/80 (80%)

Query: 9   QVKKIFEFLKNGFYEISSSLDLYFEDDLVADEKIPFLACLASALKEHSFFPYEPPAGTKR 68
           QVKKIFEFLK+GF+E+SSSLDL F+DD VA+EKIPFLA LAS LKE+   P EPPAG   
Sbjct: 376 QVKKIFEFLKDGFHEVSSSLDLSFDDDSVAEEKIPFLAYLASFLKENKSNPCEPPAGCLN 435

Query: 69  FQNLIADFMKMYHHIPLNAD 88
           F+ L+A FMK YHHIPL  D
Sbjct: 436 FRKLVAGFMKSYHHIPLTPD 455


>sp|P71404|CLPB_HELPY Chaperone protein ClpB OS=Helicobacter pylori (strain ATCC 700392 /
           26695) GN=clpB PE=3 SV=2
          Length = 856

 Score = 30.4 bits (67), Expect = 3.4,   Method: Compositional matrix adjust.
 Identities = 13/42 (30%), Positives = 24/42 (57%)

Query: 70  QNLIADFMKMYHHIPLNADCQSLQPKVINIDEEAAGNSSGED 111
           +N IA+ +  + HIP+    QS + +V+NI+ E      G++
Sbjct: 533 ENNIAEIVSQWTHIPVQKMLQSEKNRVLNIESELQKRVVGQE 574


>sp|Q9ZMH1|CLPB_HELPJ Chaperone protein ClpB OS=Helicobacter pylori (strain J99) GN=clpB
           PE=3 SV=1
          Length = 856

 Score = 30.4 bits (67), Expect = 3.5,   Method: Compositional matrix adjust.
 Identities = 13/42 (30%), Positives = 24/42 (57%)

Query: 70  QNLIADFMKMYHHIPLNADCQSLQPKVINIDEEAAGNSSGED 111
           +N IA+ +  + HIP+    QS + +V+NI+ E      G++
Sbjct: 533 ENNIAEIVSQWTHIPVQKMLQSEKNRVLNIESELQKRVVGQE 574


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.319    0.136    0.394 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 43,288,104
Number of Sequences: 539616
Number of extensions: 1633956
Number of successful extensions: 3398
Number of sequences better than 100.0: 7
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 3392
Number of HSP's gapped (non-prelim): 7
length of query: 117
length of database: 191,569,459
effective HSP length: 84
effective length of query: 33
effective length of database: 146,241,715
effective search space: 4825976595
effective search space used: 4825976595
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)