Query 040208
Match_columns 117
No_of_seqs 15 out of 17
Neff 1.8
Searched_HMMs 46136
Date Fri Mar 29 06:10:12 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040208.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/040208hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02672 methionine S-methyltr 100.0 1.7E-55 3.7E-60 398.4 8.7 106 4-109 366-471 (1082)
2 PRK05839 hypothetical protein; 97.5 0.00051 1.1E-08 53.4 7.7 97 4-105 2-101 (374)
3 PRK06108 aspartate aminotransf 97.4 0.0013 2.8E-08 49.9 8.5 98 3-106 6-103 (382)
4 PRK06855 aminotransferase; Val 97.3 0.00094 2E-08 53.6 7.1 79 28-106 35-115 (433)
5 PLN02994 1-aminocyclopropane-1 97.2 0.00052 1.1E-08 50.3 4.1 47 60-106 88-136 (153)
6 PRK07550 hypothetical protein; 97.1 0.0041 8.8E-08 48.1 8.6 101 5-106 9-109 (386)
7 PRK07681 aspartate aminotransf 97.0 0.0047 1E-07 48.2 8.3 62 44-106 50-112 (399)
8 PRK07777 aminotransferase; Val 97.0 0.0072 1.6E-07 46.7 9.0 96 4-106 8-104 (387)
9 PLN02656 tyrosine transaminase 96.9 0.0037 8E-08 49.4 6.7 64 43-106 52-115 (409)
10 PLN00143 tyrosine/nicotianamin 96.9 0.0028 6E-08 50.2 6.0 61 46-106 56-116 (409)
11 PLN02187 rooty/superroot1 96.8 0.0042 9.2E-08 50.9 6.7 63 44-106 88-150 (462)
12 PRK07682 hypothetical protein; 96.8 0.015 3.3E-07 44.6 9.3 95 5-105 4-99 (378)
13 PRK07366 succinyldiaminopimela 96.8 0.0051 1.1E-07 47.6 6.6 63 44-106 48-111 (388)
14 PRK05942 aspartate aminotransf 96.8 0.0056 1.2E-07 47.7 6.8 61 45-105 54-115 (394)
15 PRK08960 hypothetical protein; 96.7 0.014 3E-07 45.3 8.2 102 4-107 11-112 (387)
16 PRK08361 aspartate aminotransf 96.6 0.017 3.8E-07 44.8 8.4 79 26-106 34-112 (391)
17 PRK06107 aspartate aminotransf 96.6 0.0075 1.6E-07 47.3 6.5 61 44-105 51-111 (402)
18 PRK06207 aspartate aminotransf 96.5 0.011 2.4E-07 46.8 6.7 63 44-106 58-121 (405)
19 PRK09276 LL-diaminopimelate am 96.5 0.028 6.2E-07 43.3 8.8 63 44-106 49-112 (385)
20 PLN00145 tyrosine/nicotianamin 96.5 0.0089 1.9E-07 48.3 6.2 63 44-106 74-136 (430)
21 TIGR03540 DapC_direct LL-diami 96.4 0.014 3.1E-07 44.9 6.7 63 44-106 47-110 (383)
22 PRK07337 aminotransferase; Val 96.4 0.012 2.6E-07 45.5 6.1 61 44-105 48-108 (388)
23 PRK06348 aspartate aminotransf 96.3 0.032 7E-07 43.4 8.4 94 6-106 14-108 (384)
24 PRK09147 succinyldiaminopimela 96.3 0.025 5.4E-07 44.0 7.8 99 5-106 8-109 (396)
25 TIGR01264 tyr_amTase_E tyrosin 96.3 0.011 2.4E-07 46.0 5.9 62 44-106 53-114 (401)
26 PRK09440 avtA valine--pyruvate 96.3 0.012 2.7E-07 45.9 6.1 50 58-107 68-117 (416)
27 PRK07590 L,L-diaminopimelate a 96.3 0.018 4E-07 45.2 6.9 62 45-106 53-118 (409)
28 PLN02607 1-aminocyclopropane-1 96.3 0.0049 1.1E-07 50.6 3.8 47 60-106 91-139 (447)
29 PRK08636 aspartate aminotransf 96.2 0.017 3.7E-07 45.3 6.5 61 46-106 53-114 (403)
30 TIGR03539 DapC_actino succinyl 96.2 0.029 6.4E-07 43.2 7.6 48 58-105 50-98 (357)
31 TIGR03537 DapC succinyldiamino 96.2 0.021 4.5E-07 43.7 6.6 61 44-106 18-79 (350)
32 PRK08068 transaminase; Reviewe 96.2 0.022 4.8E-07 44.2 6.8 63 44-106 50-113 (389)
33 PRK08912 hypothetical protein; 96.1 0.052 1.1E-06 42.0 8.6 95 5-106 11-106 (387)
34 PRK09148 aminotransferase; Val 96.1 0.022 4.7E-07 45.0 6.6 62 45-106 49-111 (405)
35 PRK07683 aminotransferase A; V 96.1 0.05 1.1E-06 42.5 8.5 98 3-106 10-108 (387)
36 PRK08363 alanine aminotransfer 96.0 0.024 5.2E-07 44.1 6.3 61 45-106 52-112 (398)
37 PRK05764 aspartate aminotransf 96.0 0.042 9E-07 42.2 7.4 100 5-106 11-110 (393)
38 TIGR01265 tyr_nico_aTase tyros 96.0 0.021 4.7E-07 44.8 5.9 63 44-106 53-115 (403)
39 PRK07309 aromatic amino acid a 95.9 0.078 1.7E-06 41.5 8.8 62 44-106 48-110 (391)
40 PLN02376 1-aminocyclopropane-1 95.9 0.018 3.8E-07 48.2 5.5 47 60-106 90-138 (496)
41 PLN02450 1-aminocyclopropane-1 95.8 0.016 3.5E-07 47.7 4.9 90 14-106 24-130 (468)
42 PRK08175 aminotransferase; Val 95.8 0.042 9.2E-07 42.9 6.8 61 45-105 48-109 (395)
43 PRK12414 putative aminotransfe 95.7 0.044 9.5E-07 42.8 6.7 77 27-106 31-109 (384)
44 PLN00175 aminotransferase fami 95.7 0.044 9.6E-07 43.8 6.8 61 44-105 72-133 (413)
45 TIGR03538 DapC_gpp succinyldia 95.6 0.041 8.9E-07 42.8 6.2 95 6-106 8-109 (393)
46 PTZ00433 tyrosine aminotransfe 95.3 0.059 1.3E-06 42.6 6.2 64 44-107 55-124 (412)
47 PRK03317 histidinol-phosphate 95.3 0.048 1E-06 41.9 5.4 77 27-106 28-107 (368)
48 PTZ00377 alanine aminotransfer 95.2 0.065 1.4E-06 43.7 6.2 59 48-106 97-157 (481)
49 PRK06836 aspartate aminotransf 95.2 0.092 2E-06 41.1 6.8 62 44-105 51-114 (394)
50 PLN02368 alanine transaminase 95.1 0.052 1.1E-06 44.3 5.5 51 56-106 99-149 (407)
51 PLN02231 alanine transaminase 95.1 0.065 1.4E-06 45.6 6.3 53 55-107 159-211 (534)
52 PRK09082 methionine aminotrans 95.1 0.097 2.1E-06 40.8 6.8 62 44-106 48-110 (386)
53 PRK06290 aspartate aminotransf 94.8 0.14 2.9E-06 41.3 7.1 78 27-106 46-125 (410)
54 PRK02610 histidinol-phosphate 94.7 0.073 1.6E-06 41.4 5.1 61 44-105 46-109 (374)
55 PRK09257 aromatic amino acid a 94.7 0.088 1.9E-06 41.2 5.6 80 26-105 27-112 (396)
56 PRK07568 aspartate aminotransf 94.6 0.14 3E-06 39.5 6.3 49 57-106 59-107 (397)
57 PRK06225 aspartate aminotransf 94.4 0.12 2.7E-06 39.8 5.8 57 44-106 46-102 (380)
58 PRK07865 N-succinyldiaminopime 94.2 0.096 2.1E-06 40.2 4.7 47 59-105 57-104 (364)
59 PTZ00376 aspartate aminotransf 94.1 0.13 2.8E-06 40.6 5.4 52 53-104 61-114 (404)
60 PRK09265 aminotransferase AlaT 93.6 0.49 1.1E-05 37.1 7.7 50 57-106 65-114 (404)
61 PRK13355 bifunctional HTH-doma 93.3 0.29 6.4E-06 40.4 6.3 77 27-105 148-226 (517)
62 PRK05957 aspartate aminotransf 92.3 0.68 1.5E-05 36.3 6.8 61 45-105 46-107 (389)
63 COG0436 Aspartate/tyrosine/aro 91.6 0.79 1.7E-05 37.5 6.8 61 44-105 46-107 (393)
64 TIGR03542 DAPAT_plant LL-diami 91.6 0.57 1.2E-05 36.8 5.7 58 45-105 52-113 (402)
65 PRK03967 histidinol-phosphate 90.7 0.86 1.9E-05 35.1 5.8 55 44-105 36-90 (337)
66 PF00155 Aminotran_1_2: Aminot 90.0 0.49 1.1E-05 35.5 3.9 57 51-107 31-88 (363)
67 cd00609 AAT_like Aspartate ami 90.0 2 4.3E-05 31.0 6.9 54 53-106 25-78 (350)
68 PRK07324 transaminase; Validat 87.9 1.2 2.7E-05 34.9 4.9 53 47-105 46-98 (373)
69 PRK14808 histidinol-phosphate 87.7 1.2 2.6E-05 34.5 4.7 74 26-106 20-95 (335)
70 PRK14809 histidinol-phosphate 85.7 2.3 4.9E-05 32.7 5.3 70 27-106 32-101 (357)
71 PRK14807 histidinol-phosphate 85.6 1.6 3.4E-05 33.7 4.4 92 1-105 1-94 (351)
72 PRK07908 hypothetical protein; 84.9 2.6 5.7E-05 32.2 5.3 73 26-107 23-95 (349)
73 COG1167 ARO8 Transcriptional r 84.8 3 6.6E-05 34.7 6.0 78 29-106 91-174 (459)
74 PLN02397 aspartate transaminas 84.4 2.4 5.2E-05 34.2 5.1 39 52-90 79-117 (423)
75 PRK01533 histidinol-phosphate 83.7 3.2 6.9E-05 32.8 5.4 70 26-106 30-100 (366)
76 PRK03321 putative aminotransfe 82.7 3.2 6.9E-05 31.6 4.9 69 27-105 24-92 (352)
77 PRK08637 hypothetical protein; 81.4 4.7 0.0001 31.6 5.6 67 40-106 17-88 (388)
78 TIGR01141 hisC histidinol-phos 79.7 3.8 8.3E-05 30.9 4.4 53 44-105 37-89 (346)
79 PRK07392 threonine-phosphate d 77.5 5.9 0.00013 30.5 4.9 49 48-105 44-92 (360)
80 PRK05387 histidinol-phosphate 76.4 4.5 9.7E-05 30.6 3.9 70 27-105 26-95 (353)
81 PRK08056 threonine-phosphate d 76.4 6.5 0.00014 30.4 4.9 53 44-105 38-90 (356)
82 PRK06358 threonine-phosphate d 73.2 9.6 0.00021 29.6 5.1 70 27-106 21-90 (354)
83 PRK05166 histidinol-phosphate 70.2 8.6 0.00019 29.9 4.3 69 27-106 38-107 (371)
84 PRK09105 putative aminotransfe 70.0 10 0.00023 29.9 4.8 71 25-106 43-114 (370)
85 PRK08153 histidinol-phosphate 69.9 9.5 0.00021 29.8 4.5 53 45-106 51-103 (369)
86 COG1168 MalY Bifunctional PLP- 69.0 14 0.0003 32.4 5.7 71 35-107 30-103 (388)
87 cd06450 DOPA_deC_like DOPA dec 68.8 24 0.00051 26.3 6.2 63 43-105 13-75 (345)
88 PRK04870 histidinol-phosphate 65.5 23 0.00049 27.1 5.7 56 44-105 44-99 (356)
89 PRK03158 histidinol-phosphate 60.5 9.6 0.00021 29.1 2.9 51 46-105 49-99 (359)
90 PRK15481 transcriptional regul 60.2 27 0.00058 27.9 5.4 45 59-106 116-160 (431)
91 PF11230 DUF3029: Protein of u 55.2 12 0.00026 33.8 3.0 37 47-85 55-91 (487)
92 PRK09275 aspartate aminotransf 53.9 62 0.0013 28.4 7.0 59 44-105 117-179 (527)
93 PRK01151 rps17E 30S ribosomal 51.6 9.6 0.00021 25.3 1.4 51 6-78 4-54 (58)
94 PLN03026 histidinol-phosphate 49.2 31 0.00066 27.3 4.1 38 62-105 84-121 (380)
95 PF15387 DUF4611: Domain of un 47.3 14 0.00031 27.1 1.9 26 57-82 16-41 (96)
96 TIGR01825 gly_Cac_T_rel pyrido 45.5 93 0.002 23.7 6.1 57 45-105 53-111 (385)
97 PF15158 DUF4579: Domain of un 44.0 17 0.00038 29.2 2.0 19 46-64 7-25 (186)
98 PF15610 PRTase_3: PRTase ComF 43.7 19 0.00042 30.2 2.3 49 41-95 16-65 (274)
99 PRK04781 histidinol-phosphate 42.5 25 0.00055 27.5 2.7 43 55-106 53-95 (364)
100 PF04273 DUF442: Putative phos 42.0 13 0.00029 26.1 1.0 27 79-107 59-85 (110)
101 PRK04635 histidinol-phosphate 41.8 29 0.00063 26.8 2.9 37 64-106 60-96 (354)
102 PHA03111 Ser/Thr kinase; Provi 41.8 13 0.00029 33.2 1.2 16 81-96 305-320 (444)
103 PF05445 Pox_ser-thr_kin: Poxv 41.1 14 0.0003 33.0 1.2 17 81-97 301-317 (434)
104 PRK00950 histidinol-phosphate 39.5 73 0.0016 24.2 4.7 37 62-105 68-105 (361)
105 TIGR03801 asp_4_decarbox aspar 39.5 1.4E+02 0.003 26.3 6.9 60 43-105 110-173 (521)
106 PRK10977 hypothetical protein; 39.4 24 0.00053 31.1 2.4 37 46-85 68-105 (509)
107 PRK05664 threonine-phosphate d 39.2 50 0.0011 25.4 3.8 40 64-111 49-88 (330)
108 PRK02731 histidinol-phosphate 38.7 82 0.0018 24.0 4.9 69 27-105 34-102 (367)
109 TIGR01244 conserved hypothetic 35.8 19 0.00041 25.3 1.0 10 72-81 74-83 (135)
110 PF00833 Ribosomal_S17e: Ribos 35.5 24 0.00053 26.4 1.5 49 7-77 6-54 (121)
111 PLN02672 methionine S-methyltr 33.6 1.1E+02 0.0025 29.7 6.0 56 45-105 716-772 (1082)
112 TIGR03402 FeS_nifS cysteine de 32.6 1.7E+02 0.0038 22.5 5.8 27 77-105 51-77 (379)
113 PF14753 DUF4475: Domain of un 31.9 19 0.0004 28.9 0.5 21 58-78 167-187 (196)
114 cd01494 AAT_I Aspartate aminot 31.9 70 0.0015 20.4 3.1 33 68-106 4-36 (170)
115 PLN02521 galactokinase 31.1 31 0.00068 30.0 1.7 57 38-101 5-61 (497)
116 PF02805 Ada_Zn_binding: Metal 30.5 36 0.00078 22.8 1.6 19 85-103 38-56 (66)
117 TIGR01140 L_thr_O3P_dcar L-thr 30.3 67 0.0015 24.6 3.2 44 56-106 40-83 (330)
118 PF09655 Nitr_red_assoc: Conse 28.6 49 0.0011 25.5 2.2 33 55-87 46-78 (144)
119 cd00610 OAT_like Acetyl ornith 27.8 2.5E+02 0.0053 21.6 5.9 58 45-106 58-115 (413)
120 PTZ00154 40S ribosomal protein 27.3 36 0.00079 26.2 1.3 14 65-78 42-55 (134)
121 COG0788 PurU Formyltetrahydrof 27.2 28 0.0006 29.7 0.8 45 45-89 101-150 (287)
122 cd00613 GDC-P Glycine cleavage 26.8 1.2E+02 0.0026 23.3 4.0 46 56-103 50-97 (398)
123 COG1383 RPS17A Ribosomal prote 25.8 58 0.0012 23.0 2.0 18 63-80 40-57 (74)
124 COG4922 Uncharacterized protei 23.1 58 0.0013 25.1 1.7 21 36-56 41-61 (129)
125 TIGR02664 nitr_red_assoc conse 22.7 76 0.0016 24.5 2.3 34 56-89 47-80 (145)
126 COG3453 Uncharacterized protei 22.2 33 0.00071 26.4 0.2 11 79-89 60-70 (130)
127 PF08514 STAG: STAG domain ; 21.6 1.1E+02 0.0024 21.7 2.8 27 53-79 1-28 (118)
128 PF03637 Mob1_phocein: Mob1/ph 21.6 1.7E+02 0.0036 22.2 3.9 17 46-62 90-106 (175)
129 PF03202 Lipoprotein_10: Putat 21.5 1E+02 0.0023 23.0 2.8 27 53-79 101-129 (135)
130 PRK13249 phycoerythrobilin:fer 21.4 79 0.0017 26.0 2.3 37 26-65 7-43 (257)
131 cd01493 APPBP1_RUB Ubiquitin a 21.4 92 0.002 26.7 2.8 78 17-99 175-272 (425)
132 cd06502 TA_like Low-specificit 21.3 1.8E+02 0.004 21.5 4.0 38 60-105 28-65 (338)
133 cd05120 APH_ChoK_like Aminogly 20.8 1.3E+02 0.0028 18.2 2.7 29 66-94 88-124 (155)
134 PRK13248 phycoerythrobilin:fer 20.8 73 0.0016 26.3 2.0 25 43-67 17-41 (253)
135 PLN02875 4-hydroxyphenylpyruva 20.6 40 0.00086 29.0 0.5 33 58-91 236-274 (398)
136 COG1980 Archaeal fructose 1,6- 20.5 38 0.00083 29.7 0.3 21 69-89 257-277 (369)
137 PF01950 FBPase_3: Fructose-1, 20.4 6.3 0.00014 34.5 -4.4 18 70-87 257-274 (363)
No 1
>PLN02672 methionine S-methyltransferase
Probab=100.00 E-value=1.7e-55 Score=398.41 Aligned_cols=106 Identities=60% Similarity=0.856 Sum_probs=103.8
Q ss_pred ccccchHHHHHHHHhhcchhccccccccccccccccccchHHHHHHHHhhhCCCCCCCCCCcchhHHHHHHHHHHhhccc
Q 040208 4 TFISGQVKKIFEFLKNGFYEISSSLDLYFEDDLVADEKIPFLACLASALKEHSFFPYEPPAGTKRFQNLIADFMKMYHHI 83 (117)
Q Consensus 4 ~~~PnqVk~if~FLknGF~e~ssSLDLsFeddsVAdEKIpFLA~Las~Lk~~s~fP~EpPaGs~~FRnLIagFmk~YHhI 83 (117)
-|||||||+||+||||||||+|+||||+|+||+|||||||||||||++||++|||||||||||++||||||||||+||||
T Consensus 366 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 445 (1082)
T PLN02672 366 LRQPNQVKTIFKFLKNGFHEVSGSLDLSFEDESVADEKIPFLAYLASALKGLSYFPCEPPAGSKRFRNLIAGFMRIYHHI 445 (1082)
T ss_pred hcCchHHHHHHHHHHccchhhhhhccccccccccchhhccHHHHHHHHHccCCCCCCCCCccchHHHHHHHHHHHHhcCC
Confidence 48999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCeeeccchhhhhhhhhcCCCc
Q 040208 84 PLNADCQSLQPKVINIDEEAAGNSSG 109 (117)
Q Consensus 84 Pl~~dnVvvfPSR~~~~e~a~~~~~~ 109 (117)
|||+|||||||||++|||||+++-|-
T Consensus 446 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 471 (1082)
T PLN02672 446 PLTPDNVVVFPSRAVAIENALRLFSP 471 (1082)
T ss_pred cCCccceEEeccHHHHHHHHHHhhCh
Confidence 99999999999999999999998763
No 2
>PRK05839 hypothetical protein; Provisional
Probab=97.52 E-value=0.00051 Score=53.44 Aligned_cols=97 Identities=22% Similarity=0.196 Sum_probs=67.4
Q ss_pred ccccchHHHHHHHHhhcchh-ccccccccccccccccccchHHHHHHHHhhh--CCCCCCCCCCcchhHHHHHHHHHHhh
Q 040208 4 TFISGQVKKIFEFLKNGFYE-ISSSLDLYFEDDLVADEKIPFLACLASALKE--HSFFPYEPPAGTKRFQNLIADFMKMY 80 (117)
Q Consensus 4 ~~~PnqVk~if~FLknGF~e-~ssSLDLsFeddsVAdEKIpFLA~Las~Lk~--~s~fP~EpPaGs~~FRnLIagFmk~Y 80 (117)
|++|+-+-+|.++++.==.+ -..-+||+..+-...- | ..+..++++ ...+-|.+|.|...+|..||.|++.+
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~p~~~~---~--~~~~~a~~~~~~~~~~Y~~~~G~~~lr~aia~~l~~~ 76 (374)
T PRK05839 2 TFEPYPFEKLRELLKEITPNKEYKGLDLTIGEPQFET---P--KFIQDALKNNAHLLNKYPKSAGEESLREAQRGFFKRR 76 (374)
T ss_pred CCCcchHHHHHHHHHHhhhcCCCCeEEcCCCCCCCCC---C--HHHHHHHHHHhhccCCCCCCCCCHHHHHHHHHHHHHH
Confidence 67888899998888621111 1122344433322111 1 344444443 24566889999999999999999999
Q ss_pred ccccCCCCCeeeccchhhhhhhhhc
Q 040208 81 HHIPLNADCQSLQPKVINIDEEAAG 105 (117)
Q Consensus 81 HhIPl~~dnVvvfPSR~~~~e~a~~ 105 (117)
|++++++|||+|.+....++..+++
T Consensus 77 ~g~~~~~~~I~it~G~~~al~~~~~ 101 (374)
T PRK05839 77 FKIELKENELIPTFGTREVLFNFPQ 101 (374)
T ss_pred hCCCCCcceEEEecCcHHHHHHHHH
Confidence 9999999999999999998887655
No 3
>PRK06108 aspartate aminotransferase; Provisional
Probab=97.41 E-value=0.0013 Score=49.93 Aligned_cols=98 Identities=12% Similarity=0.143 Sum_probs=69.6
Q ss_pred cccccchHHHHHHHHhhcchhccccccccccccccccccchHHHHHHHHhhhCCCCCCCCCCcchhHHHHHHHHHHhhcc
Q 040208 3 STFISGQVKKIFEFLKNGFYEISSSLDLYFEDDLVADEKIPFLACLASALKEHSFFPYEPPAGTKRFQNLIADFMKMYHH 82 (117)
Q Consensus 3 ~~~~PnqVk~if~FLknGF~e~ssSLDLsFeddsVAdEKIpFLA~Las~Lk~~s~fP~EpPaGs~~FRnLIagFmk~YHh 82 (117)
+..++..++.+...... ...-++|+.-+-...-. -.....++..+++.. .-|.++.|...+|..||.+++.++.
T Consensus 6 ~~~~~~~~~~~~~~~~~----~~~~i~l~~g~~~~~~~-~~~~~~~~~~~~~~~-~~Y~~~~G~~~lr~~la~~~~~~~~ 79 (382)
T PRK06108 6 RALPESGIREVANAGRG----REGVLPLWFGESDLPTP-DFIRDAAAAALADGE-TFYTHNLGIPELREALARYVSRLHG 79 (382)
T ss_pred hhCCchHHHHHHHHHhc----cCCeEEecCCCCCCCCC-HHHHHHHHHHHhcCC-CCCCCCCCCHHHHHHHHHHHHHHhC
Confidence 44566677776666532 12345666554332111 125666777777654 3388999999999999999999999
Q ss_pred ccCCCCCeeeccchhhhhhhhhcC
Q 040208 83 IPLNADCQSLQPKVINIDEEAAGN 106 (117)
Q Consensus 83 IPl~~dnVvvfPSR~~~~e~a~~~ 106 (117)
+++++++|++.++-..++..+++.
T Consensus 80 ~~~~~~~i~~t~g~~~al~~~~~~ 103 (382)
T PRK06108 80 VATPPERIAVTSSGVQALMLAAQA 103 (382)
T ss_pred CCcCcceEEEeCChHHHHHHHHHH
Confidence 999999999999998888877653
No 4
>PRK06855 aminotransferase; Validated
Probab=97.31 E-value=0.00094 Score=53.56 Aligned_cols=79 Identities=15% Similarity=0.131 Sum_probs=62.6
Q ss_pred ccccccccccccccchH--HHHHHHHhhhCCCCCCCCCCcchhHHHHHHHHHHhhccccCCCCCeeeccchhhhhhhhhc
Q 040208 28 LDLYFEDDLVADEKIPF--LACLASALKEHSFFPYEPPAGTKRFQNLIADFMKMYHHIPLNADCQSLQPKVINIDEEAAG 105 (117)
Q Consensus 28 LDLsFeddsVAdEKIpF--LA~Las~Lk~~s~fP~EpPaGs~~FRnLIagFmk~YHhIPl~~dnVvvfPSR~~~~e~a~~ 105 (117)
++|+.-|-...|..+|. ...+...+.+...+.|.|+.|...+|..||.+++..++++++|+||+|-+.-..++..+++
T Consensus 35 ~~~~~G~p~~~~~~~p~~~~~a~~~~~~~~~~~~Y~~~~G~~~LReaia~~~~~~~g~~~~~~~I~it~G~~~al~~~~~ 114 (433)
T PRK06855 35 TWENIGDPIAKGEKIPDWMKEIVAELVMDDKSYGYCPTKGVLETREFLAELNNKRGGAQITPDDIIFFNGLGDAIAKIYG 114 (433)
T ss_pred cccccCCCcccCCCCCHHHHHHHHHHhhcCCCCCCCCCCCCHHHHHHHHHHHHhccCCCCCHhHEEEcCcHHHHHHHHHH
Confidence 55555443333667773 3356666766778899999999999999999999989999999999999998888888765
Q ss_pred C
Q 040208 106 N 106 (117)
Q Consensus 106 ~ 106 (117)
.
T Consensus 115 l 115 (433)
T PRK06855 115 L 115 (433)
T ss_pred h
Confidence 4
No 5
>PLN02994 1-aminocyclopropane-1-carboxylate synthase
Probab=97.19 E-value=0.00052 Score=50.29 Aligned_cols=47 Identities=21% Similarity=0.260 Sum_probs=42.9
Q ss_pred CCCCCcchhHHHHHHHHHHhhcc--ccCCCCCeeeccchhhhhhhhhcC
Q 040208 60 YEPPAGTKRFQNLIADFMKMYHH--IPLNADCQSLQPKVINIDEEAAGN 106 (117)
Q Consensus 60 ~EpPaGs~~FRnLIagFmk~YHh--IPl~~dnVvvfPSR~~~~e~a~~~ 106 (117)
|-++.|...||..||.||+.+++ +++.|++|||.+.-..+++.++..
T Consensus 88 Y~~~~G~~~lR~AiA~~l~~~~g~~v~~~pd~Ivvt~Ga~~al~~l~~~ 136 (153)
T PLN02994 88 FQDYHGLANFRKAIANFMAEARGGRVKFDADMIVLSAGATAANEIIMFC 136 (153)
T ss_pred CCCCCCcHHHHHHHHHHHHHHhCCCCccchhheEEcCCHHHHHHHHHHH
Confidence 67899999999999999988877 899999999999999999988763
No 6
>PRK07550 hypothetical protein; Provisional
Probab=97.12 E-value=0.0041 Score=48.06 Aligned_cols=101 Identities=12% Similarity=0.031 Sum_probs=66.5
Q ss_pred cccchHHHHHHHHhhcchhccccccccccccccccccchHHHHHHHHhhhCCCCCCCCCCcchhHHHHHHHHHHhhcccc
Q 040208 5 FISGQVKKIFEFLKNGFYEISSSLDLYFEDDLVADEKIPFLACLASALKEHSFFPYEPPAGTKRFQNLIADFMKMYHHIP 84 (117)
Q Consensus 5 ~~PnqVk~if~FLknGF~e~ssSLDLsFeddsVAdEKIpFLA~Las~Lk~~s~fP~EpPaGs~~FRnLIagFmk~YHhIP 84 (117)
..|+-+-.+++.++.+=..-...+||+-.+-.... ---++.++.+.+.+....-|.|+.|...+|..|+.+++.+|.++
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~ 87 (386)
T PRK07550 9 LFPPPIPEVRAWLAGYDGADGPLIDLSQAVPGYPP-PPELLRALAEAAADPAAHLYGPVEGLPELREAYAAHYSRLYGAA 87 (386)
T ss_pred cCChHHHHHHHHHHHHhhcCCCeEEeCCCCCCCCC-CHHHHHHHHHHHhCcCCcCCCCCCCCHHHHHHHHHHHHHHhCCC
Confidence 34555555555543210000124555544422211 11245666666665566778899999999999999999999999
Q ss_pred CCCCCeeeccchhhhhhhhhcC
Q 040208 85 LNADCQSLQPKVINIDEEAAGN 106 (117)
Q Consensus 85 l~~dnVvvfPSR~~~~e~a~~~ 106 (117)
+++++|++-+.-..++.-+++.
T Consensus 88 ~~~~~i~~t~G~~~al~~~~~~ 109 (386)
T PRK07550 88 ISPEQVHITSGCNQAFWAAMVT 109 (386)
T ss_pred CCcceEEEecCcHHHHHHHHHH
Confidence 9999999999877777766643
No 7
>PRK07681 aspartate aminotransferase; Provisional
Probab=97.03 E-value=0.0047 Score=48.20 Aligned_cols=62 Identities=13% Similarity=0.135 Sum_probs=50.8
Q ss_pred HHHHHHHHhhhCCCCCCCCCCcchhHHHHHHHHHHhhccccCCC-CCeeeccchhhhhhhhhcC
Q 040208 44 FLACLASALKEHSFFPYEPPAGTKRFQNLIADFMKMYHHIPLNA-DCQSLQPKVINIDEEAAGN 106 (117)
Q Consensus 44 FLA~Las~Lk~~s~fP~EpPaGs~~FRnLIagFmk~YHhIPl~~-dnVvvfPSR~~~~e~a~~~ 106 (117)
+...+.+.+.....+.|. +.|...+|.-||.++...++++++| +||+|.+.-..++..+++.
T Consensus 50 ~~~~~~~~~~~~~~~~y~-~~G~~~lr~aia~~~~~~~g~~~~~~~~I~it~G~~~al~~~~~~ 112 (399)
T PRK07681 50 VREEMVHTANQKESYGYT-LSGIQEFHEAVTEYYNNTHNVILNADKEVLLLMGSQDGLVHLPMV 112 (399)
T ss_pred HHHHHHHHHhccccCCCC-CCCcHHHHHHHHHHHHHHhCCCCCCCCeEEECCCcHHHHHHHHHH
Confidence 344566666655667775 6899999999999999999999999 8999999998888877653
No 8
>PRK07777 aminotransferase; Validated
Probab=97.01 E-value=0.0072 Score=46.70 Aligned_cols=96 Identities=11% Similarity=0.025 Sum_probs=70.1
Q ss_pred ccccchHHHHHHHHhhcchhccccccccccccccccccchHHHHHHHHhhhCCCCCCCCCCcchhHHHHHHHHHHhhccc
Q 040208 4 TFISGQVKKIFEFLKNGFYEISSSLDLYFEDDLVADEKIPFLACLASALKEHSFFPYEPPAGTKRFQNLIADFMKMYHHI 83 (117)
Q Consensus 4 ~~~PnqVk~if~FLknGF~e~ssSLDLsFeddsVAdEKIpFLA~Las~Lk~~s~fP~EpPaGs~~FRnLIagFmk~YHhI 83 (117)
+.++..++.++..++.. ..+||+..+-..... -..+..+.+.+... ..-|.++.|...||+-|+.+++..+.+
T Consensus 8 ~~~~~~~~~~~~~~~~~-----~~i~l~~g~p~~~~~-~~~~~~~~~~~~~~-~~~Y~~~~g~~~lr~~ia~~~~~~~g~ 80 (387)
T PRK07777 8 PFGTTIFAEMSALAVRT-----GAVNLGQGFPDEDGP-PEMLEAAQEAIAGG-VNQYPPGPGIPELRAAIAAQRRRRYGL 80 (387)
T ss_pred hcCccHHHHHHHHHhhC-----CeEEccCCCCCCCCC-HHHHHHHHHHHhcC-CCCCCCCCCCHHHHHHHHHHHHHHhCC
Confidence 45677788888888643 446666654332221 13566677777653 355888999999999999999999999
Q ss_pred cCCCC-CeeeccchhhhhhhhhcC
Q 040208 84 PLNAD-CQSLQPKVINIDEEAAGN 106 (117)
Q Consensus 84 Pl~~d-nVvvfPSR~~~~e~a~~~ 106 (117)
+.+|+ +|++.++-..+++-++..
T Consensus 81 ~~~~~~~i~~t~G~~~al~~~~~~ 104 (387)
T PRK07777 81 EYDPDTEVLVTVGATEAIAAAVLG 104 (387)
T ss_pred CCCCCCcEEEeCCcHHHHHHHHHH
Confidence 99997 799999998888876653
No 9
>PLN02656 tyrosine transaminase
Probab=96.90 E-value=0.0037 Score=49.41 Aligned_cols=64 Identities=17% Similarity=0.189 Sum_probs=56.5
Q ss_pred hHHHHHHHHhhhCCCCCCCCCCcchhHHHHHHHHHHhhccccCCCCCeeeccchhhhhhhhhcC
Q 040208 43 PFLACLASALKEHSFFPYEPPAGTKRFQNLIADFMKMYHHIPLNADCQSLQPKVINIDEEAAGN 106 (117)
Q Consensus 43 pFLA~Las~Lk~~s~fP~EpPaGs~~FRnLIagFmk~YHhIPl~~dnVvvfPSR~~~~e~a~~~ 106 (117)
.....+.+.++++..+-|.|+.|...+|.-|+.|+...+++++++++|++.+.-..++..+++.
T Consensus 52 ~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~ 115 (409)
T PLN02656 52 VAQEAVVDALQSNKFNGYAPTVGLPQARRAIAEYLSRDLPYKLSLDDVFITSGCTQAIDVALSM 115 (409)
T ss_pred HHHHHHHHHHhcCCCCCCCCCCCCHHHHHHHHHHHHHhcCCCCCcccEEEeCChHHHHHHHHHH
Confidence 4677788888888888999999999999999999998888999999999999988888877653
No 10
>PLN00143 tyrosine/nicotianamine aminotransferase; Provisional
Probab=96.89 E-value=0.0028 Score=50.24 Aligned_cols=61 Identities=20% Similarity=0.217 Sum_probs=52.8
Q ss_pred HHHHHHhhhCCCCCCCCCCcchhHHHHHHHHHHhhccccCCCCCeeeccchhhhhhhhhcC
Q 040208 46 ACLASALKEHSFFPYEPPAGTKRFQNLIADFMKMYHHIPLNADCQSLQPKVINIDEEAAGN 106 (117)
Q Consensus 46 A~Las~Lk~~s~fP~EpPaGs~~FRnLIagFmk~YHhIPl~~dnVvvfPSR~~~~e~a~~~ 106 (117)
..+..+++..+..-|.|+.|...+|..||.+++..++++++|++|+|-+.-..++..+++.
T Consensus 56 ~a~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~I~it~G~~~al~~~~~~ 116 (409)
T PLN00143 56 DAIVEAVRSAKFNSYAPTGGILPARRAIADYLSNDLPYQLSPDDVYLTLGCKHAAEIIIKV 116 (409)
T ss_pred HHHHHHHhCcCCCCCCCCCCCHHHHHHHHHHHHhhcCCCCCHhhEEEecChHHHHHHHHHH
Confidence 4466777777777799999999999999999999889999999999999888888877653
No 11
>PLN02187 rooty/superroot1
Probab=96.82 E-value=0.0042 Score=50.94 Aligned_cols=63 Identities=17% Similarity=0.073 Sum_probs=55.5
Q ss_pred HHHHHHHHhhhCCCCCCCCCCcchhHHHHHHHHHHhhccccCCCCCeeeccchhhhhhhhhcC
Q 040208 44 FLACLASALKEHSFFPYEPPAGTKRFQNLIADFMKMYHHIPLNADCQSLQPKVINIDEEAAGN 106 (117)
Q Consensus 44 FLA~Las~Lk~~s~fP~EpPaGs~~FRnLIagFmk~YHhIPl~~dnVvvfPSR~~~~e~a~~~ 106 (117)
....+..+++......|.|+.|...+|..||.+++..++++++|++|++-+.-..+++.+++.
T Consensus 88 ~~~~~~~~~~~~~~~~Y~~~~G~~~lR~aiA~~~~~~~~~~~~~~~I~it~G~~~al~~~~~~ 150 (462)
T PLN02187 88 AEDAVVDVLRSGKGNSYGPGAGILPARRAVADYMNRDLPHKLTPEDIFLTAGCNQGIEIVFES 150 (462)
T ss_pred HHHHHHHHHhCCCCCCCCCCCChHHHHHHHHHHHHHhcCCCCCcccEEEeCCHHHHHHHHHHH
Confidence 456677888877778899999999999999999998889999999999999999999887764
No 12
>PRK07682 hypothetical protein; Validated
Probab=96.81 E-value=0.015 Score=44.63 Aligned_cols=95 Identities=13% Similarity=0.174 Sum_probs=65.8
Q ss_pred cccchHHHHHHHHhhcchhccccccccccccccccccchHHHHHHHHhhhCCCCCCCCCCcchhHHHHHHHHHHhhcccc
Q 040208 5 FISGQVKKIFEFLKNGFYEISSSLDLYFEDDLVADEKIPFLACLASALKEHSFFPYEPPAGTKRFQNLIADFMKMYHHIP 84 (117)
Q Consensus 5 ~~PnqVk~if~FLknGF~e~ssSLDLsFeddsVAdEKIpFLA~Las~Lk~~s~fP~EpPaGs~~FRnLIagFmk~YHhIP 84 (117)
.+|+.+..+++...+. ...++|+.-+-.... --.....+...+.+ ....|.|+.|...+|+-||.++...++++
T Consensus 4 ~~~~~~~~~~~~~~~~----~~~i~l~~~~~~~~~-~~~~~~~~~~~~~~-~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~ 77 (378)
T PRK07682 4 LQPSGIRKFFDLAANM----EGVISLGVGEPDFVT-PWNVREASIRSLEQ-GYTSYTANAGLLELRQEIAKYLKKRFAVS 77 (378)
T ss_pred CCccHHHHHHHHHHhc----CCeEEeCCCCCCCCC-CHHHHHHHHHHHhc-CCCCCCCCCCcHHHHHHHHHHHHHHhCCC
Confidence 3566667777765442 234555544432211 11235666666664 45678889999999999999999988999
Q ss_pred CCCC-Ceeeccchhhhhhhhhc
Q 040208 85 LNAD-CQSLQPKVINIDEEAAG 105 (117)
Q Consensus 85 l~~d-nVvvfPSR~~~~e~a~~ 105 (117)
++++ +|++-+.-..+++-++.
T Consensus 78 ~~~~~~i~~t~G~~~al~~~~~ 99 (378)
T PRK07682 78 YDPNDEIIVTVGASQALDVAMR 99 (378)
T ss_pred CCCCCcEEEeCChHHHHHHHHH
Confidence 9997 79999988888887764
No 13
>PRK07366 succinyldiaminopimelate transaminase; Validated
Probab=96.79 E-value=0.0051 Score=47.57 Aligned_cols=63 Identities=14% Similarity=0.072 Sum_probs=51.6
Q ss_pred HHHHHHHHhhhCCCCCCCCCCcchhHHHHHHHHHHhhccccCCCC-CeeeccchhhhhhhhhcC
Q 040208 44 FLACLASALKEHSFFPYEPPAGTKRFQNLIADFMKMYHHIPLNAD-CQSLQPKVINIDEEAAGN 106 (117)
Q Consensus 44 FLA~Las~Lk~~s~fP~EpPaGs~~FRnLIagFmk~YHhIPl~~d-nVvvfPSR~~~~e~a~~~ 106 (117)
....+.+.+.+...+-|.++.|...+|..||.+++..|+++++|+ ||+|-+.-..++..+++.
T Consensus 48 ~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~~I~it~Gs~~al~~~~~~ 111 (388)
T PRK07366 48 ALEAIAQSLHDPSTHGYLLFHGTLDFREAAAQWYEQRFGLAVDPETEVLPLIGSQEGTAHLPLA 111 (388)
T ss_pred HHHHHHHHHhCcccCCCCCCCCCHHHHHHHHHHHHHhhCCcCCCcCeEEECCCcHHHHHHHHHH
Confidence 355566666555556688899999999999999999999999999 699999888888877663
No 14
>PRK05942 aspartate aminotransferase; Provisional
Probab=96.78 E-value=0.0056 Score=47.73 Aligned_cols=61 Identities=20% Similarity=0.165 Sum_probs=49.9
Q ss_pred HHHHHHHhhhCCCCCCCCCCcchhHHHHHHHHHHhhccccCCCCC-eeeccchhhhhhhhhc
Q 040208 45 LACLASALKEHSFFPYEPPAGTKRFQNLIADFMKMYHHIPLNADC-QSLQPKVINIDEEAAG 105 (117)
Q Consensus 45 LA~Las~Lk~~s~fP~EpPaGs~~FRnLIagFmk~YHhIPl~~dn-VvvfPSR~~~~e~a~~ 105 (117)
+..+.+.+.+...+.|.+|.|...||..||.+++..++++++++| |+|-+.-..++..++.
T Consensus 54 ~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~~~~~~~~~~i~vt~G~~~al~~~~~ 115 (394)
T PRK05942 54 IEAAIAALADPQNHGYPPFEGTASFRQAITDWYHRRYGVELDPDSEALPLLGSKEGLTHLAL 115 (394)
T ss_pred HHHHHHHHhCCCCccCCCCCCCHHHHHHHHHHHHHHHCCCcCCCCeEEEccChHHHHHHHHH
Confidence 455555665555678989999999999999999999999999996 7888888888877654
No 15
>PRK08960 hypothetical protein; Provisional
Probab=96.65 E-value=0.014 Score=45.31 Aligned_cols=102 Identities=13% Similarity=0.038 Sum_probs=69.7
Q ss_pred ccccchHHHHHHHHhhcchhccccccccccccccccccchHHHHHHHHhhhCCCCCCCCCCcchhHHHHHHHHHHhhccc
Q 040208 4 TFISGQVKKIFEFLKNGFYEISSSLDLYFEDDLVADEKIPFLACLASALKEHSFFPYEPPAGTKRFQNLIADFMKMYHHI 83 (117)
Q Consensus 4 ~~~PnqVk~if~FLknGF~e~ssSLDLsFeddsVAdEKIpFLA~Las~Lk~~s~fP~EpPaGs~~FRnLIagFmk~YHhI 83 (117)
+.+|..+..|++.++.-+......++|...+-...- --+.+..+.+.+++. ..-|.|+.|...+|..||.+++.-+++
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~i~l~~g~~~~~~-~~~v~~a~~~~~~~~-~~~Y~~~~g~~~lr~~ia~~~~~~~g~ 88 (387)
T PRK08960 11 DIEPFHVMALLARANELEAAGHDVIHLEIGEPDFTT-AEPIVAAGQAALAAG-HTRYTAARGLPALREAIAGFYAQRYGV 88 (387)
T ss_pred hCCchHHHHHHHHHHHHHhcCCCeEEeCCCCCCCCC-CHHHHHHHHHHHhcC-CCccCCCCCCHHHHHHHHHHHHHHhCC
Confidence 345666777777765544333344555544433110 112445566666643 345788999999999999999887889
Q ss_pred cCCCCCeeeccchhhhhhhhhcCC
Q 040208 84 PLNADCQSLQPKVINIDEEAAGNS 107 (117)
Q Consensus 84 Pl~~dnVvvfPSR~~~~e~a~~~~ 107 (117)
+++|++|++-+.-..++..+++.-
T Consensus 89 ~~~~~~i~it~G~~~al~~~~~~~ 112 (387)
T PRK08960 89 DVDPERILVTPGGSGALLLASSLL 112 (387)
T ss_pred CCChhhEEEccCcHHHHHHHHHHh
Confidence 999999999999999998887643
No 16
>PRK08361 aspartate aminotransferase; Provisional
Probab=96.61 E-value=0.017 Score=44.81 Aligned_cols=79 Identities=16% Similarity=0.216 Sum_probs=56.5
Q ss_pred ccccccccccccccccchHHHHHHHHhhhCCCCCCCCCCcchhHHHHHHHHHHhhccccCCCCCeeeccchhhhhhhhhc
Q 040208 26 SSLDLYFEDDLVADEKIPFLACLASALKEHSFFPYEPPAGTKRFQNLIADFMKMYHHIPLNADCQSLQPKVINIDEEAAG 105 (117)
Q Consensus 26 sSLDLsFeddsVAdEKIpFLA~Las~Lk~~s~fP~EpPaGs~~FRnLIagFmk~YHhIPl~~dnVvvfPSR~~~~e~a~~ 105 (117)
..+||+.-+-.... --....++.+.+.+ ...-|.|+.|...+|..||.+++....+++++++|++.++-..++..+++
T Consensus 34 ~~i~l~~~~~~~~~-~~~~~~~~~~~~~~-~~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~ 111 (391)
T PRK08361 34 NVISLGIGEPDFDT-PKNIKEAAKRALDE-GWTHYTPNAGIPELREAIAEYYKKFYGVDVDVDNVIVTAGAYEATYLAFE 111 (391)
T ss_pred CeEEcCCCCCCCCC-CHHHHHHHHHHHhc-CCCCCCCCCCcHHHHHHHHHHHHHHhCCCCCcccEEEeCChHHHHHHHHH
Confidence 34666655433211 11234555555554 34558889999999999999998777889999999999998888887765
Q ss_pred C
Q 040208 106 N 106 (117)
Q Consensus 106 ~ 106 (117)
.
T Consensus 112 ~ 112 (391)
T PRK08361 112 S 112 (391)
T ss_pred H
Confidence 3
No 17
>PRK06107 aspartate aminotransferase; Provisional
Probab=96.61 E-value=0.0075 Score=47.30 Aligned_cols=61 Identities=10% Similarity=-0.024 Sum_probs=51.8
Q ss_pred HHHHHHHHhhhCCCCCCCCCCcchhHHHHHHHHHHhhccccCCCCCeeeccchhhhhhhhhc
Q 040208 44 FLACLASALKEHSFFPYEPPAGTKRFQNLIADFMKMYHHIPLNADCQSLQPKVINIDEEAAG 105 (117)
Q Consensus 44 FLA~Las~Lk~~s~fP~EpPaGs~~FRnLIagFmk~YHhIPl~~dnVvvfPSR~~~~e~a~~ 105 (117)
...++.+.++.. ..=|.+|.|...+|.-|+.+++.++.++++++||++-+....++..+++
T Consensus 51 ~~~~~~~~~~~~-~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~i~~t~G~~~al~~~~~ 111 (402)
T PRK06107 51 IKQAAVAAIERG-ETKYTLVNGTPALRKAIIAKLERRNGLHYADNEITVGGGAKQAIFLALM 111 (402)
T ss_pred HHHHHHHHHHcC-CCCCCCCCCCHHHHHHHHHHHHHhcCCCCChhhEEEeCCHHHHHHHHHH
Confidence 456777777643 3458999999999999999999999999999999999988888887765
No 18
>PRK06207 aspartate aminotransferase; Provisional
Probab=96.47 E-value=0.011 Score=46.82 Aligned_cols=63 Identities=14% Similarity=0.199 Sum_probs=53.7
Q ss_pred HHHHHHHHhhhCCCCCCCCCCcchhHHHHHHHHHHhhccccCCC-CCeeeccchhhhhhhhhcC
Q 040208 44 FLACLASALKEHSFFPYEPPAGTKRFQNLIADFMKMYHHIPLNA-DCQSLQPKVINIDEEAAGN 106 (117)
Q Consensus 44 FLA~Las~Lk~~s~fP~EpPaGs~~FRnLIagFmk~YHhIPl~~-dnVvvfPSR~~~~e~a~~~ 106 (117)
....+...++....+-|.++.|...+|..||.+++.++.++++| ++|+|-+.-..++..+++.
T Consensus 58 ~~~~~~~~~~~~~~~~Y~~~~G~~~LR~aia~~l~~~~g~~~~~~~~I~it~Ga~~al~~~~~~ 121 (405)
T PRK06207 58 AFELFSAGVERGGVQAYTEYRGDADIRELLAARLAAFTGAPVDAADELIITPGTQGALFLAVAA 121 (405)
T ss_pred HHHHHHHHHhcCCCccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCEEEeCCcHHHHHHHHHH
Confidence 35566667766555678889999999999999999999999999 9999999999999888764
No 19
>PRK09276 LL-diaminopimelate aminotransferase; Provisional
Probab=96.47 E-value=0.028 Score=43.27 Aligned_cols=63 Identities=13% Similarity=0.138 Sum_probs=50.8
Q ss_pred HHHHHHHHhhhCCCCCCCCCCcchhHHHHHHHHHHhhccccCCCCC-eeeccchhhhhhhhhcC
Q 040208 44 FLACLASALKEHSFFPYEPPAGTKRFQNLIADFMKMYHHIPLNADC-QSLQPKVINIDEEAAGN 106 (117)
Q Consensus 44 FLA~Las~Lk~~s~fP~EpPaGs~~FRnLIagFmk~YHhIPl~~dn-VvvfPSR~~~~e~a~~~ 106 (117)
....+...+.+.....|.+|.|...+|..||.|++.++++++++++ |++.+.-..++..+++.
T Consensus 49 ~~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~~ii~t~G~~~~i~~~~~~ 112 (385)
T PRK09276 49 IIEAMCKAVEDPENHQYPSYEGMLEFRKAVADWYKRRFGVELDPETEVISLIGSKEGIAHIPLA 112 (385)
T ss_pred HHHHHHHHHhCCCCCCCCCCCCcHHHHHHHHHHHHHHhCCCCCCCCcEEEccCcHHHHHHHHHH
Confidence 4567777776656677889999999999999999988889999985 77778877777776553
No 20
>PLN00145 tyrosine/nicotianamine aminotransferase; Provisional
Probab=96.45 E-value=0.0089 Score=48.25 Aligned_cols=63 Identities=17% Similarity=0.130 Sum_probs=55.2
Q ss_pred HHHHHHHHhhhCCCCCCCCCCcchhHHHHHHHHHHhhccccCCCCCeeeccchhhhhhhhhcC
Q 040208 44 FLACLASALKEHSFFPYEPPAGTKRFQNLIADFMKMYHHIPLNADCQSLQPKVINIDEEAAGN 106 (117)
Q Consensus 44 FLA~Las~Lk~~s~fP~EpPaGs~~FRnLIagFmk~YHhIPl~~dnVvvfPSR~~~~e~a~~~ 106 (117)
....+...++...+..|.++.|...+|..||.+++.-+.+++++++|++.+.-..+++-++..
T Consensus 74 ~~~a~~~al~~~~~~~Y~~~~G~~~lr~aia~~~~~~~~~~~~~~~v~it~G~~~al~l~~~~ 136 (430)
T PLN00145 74 AEDAVAAALRSGKYNSYSTCVGLLPARRAIAEYLSRDLPYELSTDDIYLTAGCAQAIEIIMSV 136 (430)
T ss_pred HHHHHHHHHHcCcCCCCCCCccCHHHHHHHHHHHhhccCCCCChhhEEEeCCHHHHHHHHHHH
Confidence 556777888877777888999999999999999988888999999999999999999887664
No 21
>TIGR03540 DapC_direct LL-diaminopimelate aminotransferase. This clade of the pfam00155 superfamily of aminotransferases includes several which are adjacent to elements of the lysine biosynthesis via diaminopimelate pathway (GenProp0125). Every member of this clade is from a genome which possesses most of the lysine biosynthesis pathway but lacks any of the known aminotransferases, succinylases, desuccinylases, acetylases or deacetylases typical of the acylated versions of this pathway nor do they have the direct, NADPH-dependent enzyme (ddh). Although there is no experimental characterization of any of the sequences in this clade, a direct pathway is known in plants and Chlamydia, so it seems quite reasonable that these enzymes catalyze the same transformation.
Probab=96.40 E-value=0.014 Score=44.86 Aligned_cols=63 Identities=13% Similarity=0.079 Sum_probs=51.5
Q ss_pred HHHHHHHHhhhCCCCCCCCCCcchhHHHHHHHHHHhhccccCCCC-CeeeccchhhhhhhhhcC
Q 040208 44 FLACLASALKEHSFFPYEPPAGTKRFQNLIADFMKMYHHIPLNAD-CQSLQPKVINIDEEAAGN 106 (117)
Q Consensus 44 FLA~Las~Lk~~s~fP~EpPaGs~~FRnLIagFmk~YHhIPl~~d-nVvvfPSR~~~~e~a~~~ 106 (117)
....+.+.++.....-|.+|.|...+|..||.|++..|+++++++ +|++-|.-..++..+++.
T Consensus 47 ~~~~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~~~~~~~~~~vi~t~G~~~~l~~~~~~ 110 (383)
T TIGR03540 47 IVEALCKAAENPENHRYPSYEGMLAYRQAVADWYKRRFGVELDPETEVLSLIGSKEGIAHIPLA 110 (383)
T ss_pred HHHHHHHHHhCCCCCCCCCCCCCHHHHHHHHHHHHHhhCCCCCCCCeEEECCCcHHHHHHHHHH
Confidence 455666667665667788999999999999999999999999998 577779888888777654
No 22
>PRK07337 aminotransferase; Validated
Probab=96.35 E-value=0.012 Score=45.54 Aligned_cols=61 Identities=13% Similarity=0.101 Sum_probs=50.9
Q ss_pred HHHHHHHHhhhCCCCCCCCCCcchhHHHHHHHHHHhhccccCCCCCeeeccchhhhhhhhhc
Q 040208 44 FLACLASALKEHSFFPYEPPAGTKRFQNLIADFMKMYHHIPLNADCQSLQPKVINIDEEAAG 105 (117)
Q Consensus 44 FLA~Las~Lk~~s~fP~EpPaGs~~FRnLIagFmk~YHhIPl~~dnVvvfPSR~~~~e~a~~ 105 (117)
....+...+.+ ...-|.++.|...+|..||.+++..|++.++|+||++-+.-..++..++.
T Consensus 48 ~~~~~~~~~~~-~~~~Y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~i~~t~G~~~al~~~~~ 108 (388)
T PRK07337 48 VVEAAARALRR-GVTQYTSALGLAPLREAIAAWYARRFGLDVAPERIVVTAGASAALLLACL 108 (388)
T ss_pred HHHHHHHHHhc-CCCCCCCCCCCHHHHHHHHHHHHHHhCCCCChHhEEEecCcHHHHHHHHH
Confidence 35566666654 34568889999999999999999999999999999999999988887665
No 23
>PRK06348 aspartate aminotransferase; Provisional
Probab=96.33 E-value=0.032 Score=43.38 Aligned_cols=94 Identities=11% Similarity=0.013 Sum_probs=61.7
Q ss_pred ccchHHHHHHHHhhcchhccccccccccccccccccchH-HHHHHHHhhhCCCCCCCCCCcchhHHHHHHHHHHhhcccc
Q 040208 6 ISGQVKKIFEFLKNGFYEISSSLDLYFEDDLVADEKIPF-LACLASALKEHSFFPYEPPAGTKRFQNLIADFMKMYHHIP 84 (117)
Q Consensus 6 ~PnqVk~if~FLknGF~e~ssSLDLsFeddsVAdEKIpF-LA~Las~Lk~~s~fP~EpPaGs~~FRnLIagFmk~YHhIP 84 (117)
.++.++.+.+-.+.+ ...+||+..+-.... -|. +..+.+.+.+ +..-|.+|.|...+|..||.+++..+.++
T Consensus 14 ~~~~~~~~~~~~~~~----~~~i~l~~g~p~~~~--~~~~~~~~~~~~~~-~~~~Y~~~~G~~~lr~~ia~~~~~~~~~~ 86 (384)
T PRK06348 14 EVNIMAEIATLAKKF----PDIIDLSLGDPDLIT--DESIINAAFEDAKK-GHTRYTDSGGDVELIEEIIKYYSKNYDLS 86 (384)
T ss_pred CccHHHHHHHHHHhc----CCcEEcCCCCCCCCC--CHHHHHHHHHHHhc-CCCCCCCCCCcHHHHHHHHHHHHHHhCCC
Confidence 344555555555432 123566655433221 122 2223333332 44668899999999999999998888999
Q ss_pred CCCCCeeeccchhhhhhhhhcC
Q 040208 85 LNADCQSLQPKVINIDEEAAGN 106 (117)
Q Consensus 85 l~~dnVvvfPSR~~~~e~a~~~ 106 (117)
++++||++-+.-..++..+++.
T Consensus 87 ~~~~~i~it~G~~~al~~~~~~ 108 (384)
T PRK06348 87 FKRNEIMATVGACHGMYLALQS 108 (384)
T ss_pred CChhhEEEcCChHHHHHHHHHH
Confidence 9999999999998888776553
No 24
>PRK09147 succinyldiaminopimelate transaminase; Provisional
Probab=96.33 E-value=0.025 Score=44.02 Aligned_cols=99 Identities=13% Similarity=0.057 Sum_probs=64.6
Q ss_pred cccchHHHHHHHHhhc-chhccccccccccccccccccchHHHHHHHHhhhCCCCCCCCCCcchhHHHHHHHHHHhhccc
Q 040208 5 FISGQVKKIFEFLKNG-FYEISSSLDLYFEDDLVADEKIPFLACLASALKEHSFFPYEPPAGTKRFQNLIADFMKMYHHI 83 (117)
Q Consensus 5 ~~PnqVk~if~FLknG-F~e~ssSLDLsFeddsVAdEKIpFLA~Las~Lk~~s~fP~EpPaGs~~FRnLIagFmk~YHhI 83 (117)
..+..++.|.+.++.= ...=...+||+--+-...-. =.+...+.+.+. ..+-|.++.|...+|..||.++..+|++
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~p~~~~~-~~~~~~~~~~~~--~~~~Y~~~~G~~~lr~~ia~~~~~~~g~ 84 (396)
T PRK09147 8 LQPYPFEKLRALFAGVTPPADLPPISLSIGEPKHPTP-AFIKDALAANLD--GLASYPTTAGLPALREAIAAWLERRYGL 84 (396)
T ss_pred CCcchHHHHHHHHHhhhhccCCCeEecCCCCCCCCCC-HHHHHHHHHHhh--hhcCCCCCCCCHHHHHHHHHHHHHHhCC
Confidence 3566777787777431 00001234444333211100 013445555554 4566888999999999999999999999
Q ss_pred c-CCCC-CeeeccchhhhhhhhhcC
Q 040208 84 P-LNAD-CQSLQPKVINIDEEAAGN 106 (117)
Q Consensus 84 P-l~~d-nVvvfPSR~~~~e~a~~~ 106 (117)
+ ++++ +|+|-+.-..++..+++.
T Consensus 85 ~~~~~~~~i~it~G~~~al~~~~~~ 109 (396)
T PRK09147 85 PALDPATQVLPVNGSREALFAFAQT 109 (396)
T ss_pred CcCCccceEEECCChHHHHHHHHHH
Confidence 9 9996 899999988888887764
No 25
>TIGR01264 tyr_amTase_E tyrosine aminotransferase, eukaryotic. This model describes tyrosine aminotransferase as found in animals and Trypanosoma cruzi. It is the first enzyme of a pathway of tyrosine degradation via homogentisate. Several plant enzyme designated as probable tyrosine aminotransferases are very closely related to an experimentally demonstrated nicotianamine aminotransferase, an enzyme in a siderophore (iron uptake chelator) biosynthesis pathway. These plant sequences are excluded from the model seed and score between the trusted an noise cutoffs.
Probab=96.32 E-value=0.011 Score=46.01 Aligned_cols=62 Identities=18% Similarity=0.235 Sum_probs=52.3
Q ss_pred HHHHHHHHhhhCCCCCCCCCCcchhHHHHHHHHHHhhccccCCCCCeeeccchhhhhhhhhcC
Q 040208 44 FLACLASALKEHSFFPYEPPAGTKRFQNLIADFMKMYHHIPLNADCQSLQPKVINIDEEAAGN 106 (117)
Q Consensus 44 FLA~Las~Lk~~s~fP~EpPaGs~~FRnLIagFmk~YHhIPl~~dnVvvfPSR~~~~e~a~~~ 106 (117)
....+...+++..++-|.|+.|...+|..||.++..+ ++++++++|++.+.-..++.-+++.
T Consensus 53 ~~~~~~~~~~~~~~~~Y~~~~g~~~lr~aia~~~~~~-~~~~~~~~i~~t~G~~~al~~~~~~ 114 (401)
T TIGR01264 53 VMQAMKDSLDSGKYNGYAPTVGALSAREAIASYYHNP-DGPIEADDVVLCSGCSHAIEMCIAA 114 (401)
T ss_pred HHHHHHHHHhccCCCCCCCCCCCHHHHHHHHHHHhhc-CCCCCHHHEEECcChHHHHHHHHHH
Confidence 4666777777766778999999999999999999885 6789999999999988888877653
No 26
>PRK09440 avtA valine--pyruvate transaminase; Provisional
Probab=96.31 E-value=0.012 Score=45.86 Aligned_cols=50 Identities=10% Similarity=-0.001 Sum_probs=44.4
Q ss_pred CCCCCCCcchhHHHHHHHHHHhhccccCCCCCeeeccchhhhhhhhhcCC
Q 040208 58 FPYEPPAGTKRFQNLIADFMKMYHHIPLNADCQSLQPKVINIDEEAAGNS 107 (117)
Q Consensus 58 fP~EpPaGs~~FRnLIagFmk~YHhIPl~~dnVvvfPSR~~~~e~a~~~~ 107 (117)
.-|-+|.|...+|..||.+++.++.++++|+||+|-+.-..++..+++.-
T Consensus 68 ~~Y~~~~G~~~LR~aia~~~~~~~g~~v~~~~I~it~Ga~~al~~~~~~l 117 (416)
T PRK09440 68 GNYDGPQGKDELIEALAALLNERYGWNISPQNIALTNGSQSAFFYLFNLF 117 (416)
T ss_pred ccCCCCCCCHHHHHHHHHHHHHHhCCCCChhhEEEccChHHHHHHHHHHH
Confidence 35788999999999999999999999999999999999988888776543
No 27
>PRK07590 L,L-diaminopimelate aminotransferase; Validated
Probab=96.27 E-value=0.018 Score=45.24 Aligned_cols=62 Identities=16% Similarity=0.118 Sum_probs=50.8
Q ss_pred HHHHHHHhhhC----CCCCCCCCCcchhHHHHHHHHHHhhccccCCCCCeeeccchhhhhhhhhcC
Q 040208 45 LACLASALKEH----SFFPYEPPAGTKRFQNLIADFMKMYHHIPLNADCQSLQPKVINIDEEAAGN 106 (117)
Q Consensus 45 LA~Las~Lk~~----s~fP~EpPaGs~~FRnLIagFmk~YHhIPl~~dnVvvfPSR~~~~e~a~~~ 106 (117)
...+.+.+++. ..+-|.|+.|...+|..||.+++.-+.++++|+||+|-+.-..++...+..
T Consensus 53 ~~~~~~~~~~~~~~~~~~~Y~~~~G~~~LR~aia~~~~~~~g~~~~~~~I~it~Ga~~al~~l~~~ 118 (409)
T PRK07590 53 IEAMHKAVDEMGTAETFRGYGPEQGYDFLREKIAENDYQARGCDISADEIFISDGAKCDTGNILDI 118 (409)
T ss_pred HHHHHHHHhcccccCCccCCCCCCCCHHHHHHHHHHHHHhcCCcCChhhEEECCCHHHHHHHHHHh
Confidence 45666677653 556788999999999999999888889999999999999988888765443
No 28
>PLN02607 1-aminocyclopropane-1-carboxylate synthase
Probab=96.26 E-value=0.0049 Score=50.63 Aligned_cols=47 Identities=19% Similarity=0.231 Sum_probs=41.8
Q ss_pred CCCCCcchhHHHHHHHHHHhhcc--ccCCCCCeeeccchhhhhhhhhcC
Q 040208 60 YEPPAGTKRFQNLIADFMKMYHH--IPLNADCQSLQPKVINIDEEAAGN 106 (117)
Q Consensus 60 ~EpPaGs~~FRnLIagFmk~YHh--IPl~~dnVvvfPSR~~~~e~a~~~ 106 (117)
|.++.|+.++|..||.||..+++ +|++|++|+|-+.-..+++.++..
T Consensus 91 y~~~~G~~~LR~aiA~~l~~~~~~~~~v~p~~Ivit~G~t~al~~l~~~ 139 (447)
T PLN02607 91 FQDYHGLKSFRQAMASFMEQIRGGKARFDPDRIVLTAGATAANELLTFI 139 (447)
T ss_pred cCCCcchHHHHHHHHHHHHHhcCCCCCcCHHHeEEcCChHHHHHHHHHH
Confidence 66799999999999999998876 689999999999999998877653
No 29
>PRK08636 aspartate aminotransferase; Provisional
Probab=96.24 E-value=0.017 Score=45.31 Aligned_cols=61 Identities=10% Similarity=0.046 Sum_probs=49.9
Q ss_pred HHHHHHhhhCCCCCCCCCCcchhHHHHHHHHHHhhccccCCCC-CeeeccchhhhhhhhhcC
Q 040208 46 ACLASALKEHSFFPYEPPAGTKRFQNLIADFMKMYHHIPLNAD-CQSLQPKVINIDEEAAGN 106 (117)
Q Consensus 46 A~Las~Lk~~s~fP~EpPaGs~~FRnLIagFmk~YHhIPl~~d-nVvvfPSR~~~~e~a~~~ 106 (117)
..+...+.+...+-|.++.|...+|..||.+++..++++++++ ||+|-+....++..+++.
T Consensus 53 ~~~~~~~~~~~~~~Y~~~~G~~~lR~~ia~~l~~~~~~~~~~~~~I~it~G~~~al~~~~~~ 114 (403)
T PRK08636 53 DKLCESAQKPKTHGYSVSKGIYKLRLAICNWYKRKYNVDLDPETEVVATMGSKEGYVHLVQA 114 (403)
T ss_pred HHHHHHhcCCccCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCeEEECCChHHHHHHHHHH
Confidence 3333334444567788999999999999999999999999998 799999999999888764
No 30
>TIGR03539 DapC_actino succinyldiaminopimelate transaminase. This family of actinobacterial succinyldiaminopimelate transaminase enzymes (DapC) are members of the pfam00155 superfamily. Many of these genes appear adjacent to other genes encoding enzymes of the lysine biosynthesis via diaminopimelate pathway (GenProp0125).
Probab=96.22 E-value=0.029 Score=43.17 Aligned_cols=48 Identities=15% Similarity=0.151 Sum_probs=43.1
Q ss_pred CCCCCCCcchhHHHHHHHHHHhhcccc-CCCCCeeeccchhhhhhhhhc
Q 040208 58 FPYEPPAGTKRFQNLIADFMKMYHHIP-LNADCQSLQPKVINIDEEAAG 105 (117)
Q Consensus 58 fP~EpPaGs~~FRnLIagFmk~YHhIP-l~~dnVvvfPSR~~~~e~a~~ 105 (117)
.-|.+|.|+..+|+-|+.+++.+++++ +++++|++-+.-..++..++.
T Consensus 50 ~~Y~~~~G~~~lr~~ia~~~~~~~~~~~~~~~~I~it~G~~~~i~~~~~ 98 (357)
T TIGR03539 50 PGYPQTWGTPELREAIVDWLERRRGVPGLDPTAVLPVIGTKELVAWLPT 98 (357)
T ss_pred CCCCcccCCHHHHHHHHHHHHHhcCCCCCCcCeEEEccChHHHHHHHHH
Confidence 447789999999999999999999999 999999999998888887654
No 31
>TIGR03537 DapC succinyldiaminopimelate transaminase. Note: the detailed information included in the EC:2.6.1.17 record includes the assertions that the enzyme uses the pyridoxal pyrophosphate cofactor, which is consistent with the pfam00155 family, and the assertion that the amino group donor is L-glutamate, which is undetermined for the sequences in this clade.
Probab=96.19 E-value=0.021 Score=43.75 Aligned_cols=61 Identities=16% Similarity=0.117 Sum_probs=48.6
Q ss_pred HHHHHHHHhhhCCCCCCCCCCcchhHHHHHHHHHHhhccccCCCC-CeeeccchhhhhhhhhcC
Q 040208 44 FLACLASALKEHSFFPYEPPAGTKRFQNLIADFMKMYHHIPLNAD-CQSLQPKVINIDEEAAGN 106 (117)
Q Consensus 44 FLA~Las~Lk~~s~fP~EpPaGs~~FRnLIagFmk~YHhIPl~~d-nVvvfPSR~~~~e~a~~~ 106 (117)
+...+.+.... ..-|.+|.|...+|..|+.|+...|+++++++ ||++-+....++..++..
T Consensus 18 ~~~~~~~~~~~--~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~~Iiit~Gs~~ai~~~~~~ 79 (350)
T TIGR03537 18 IRKALIDAVPE--VSQYPSALGTKALREAISGWFERRFGVKLDPDAQVLPSAGSKEAIFHFPLV 79 (350)
T ss_pred HHHHHHHHHhc--cCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCcEEEcCChHHHHHHHHHH
Confidence 44455554433 33467899999999999999999999999998 999999988888877653
No 32
>PRK08068 transaminase; Reviewed
Probab=96.18 E-value=0.022 Score=44.20 Aligned_cols=63 Identities=17% Similarity=0.105 Sum_probs=51.3
Q ss_pred HHHHHHHHhhhCCCCCCCCCCcchhHHHHHHHHHHhhccccCCCC-CeeeccchhhhhhhhhcC
Q 040208 44 FLACLASALKEHSFFPYEPPAGTKRFQNLIADFMKMYHHIPLNAD-CQSLQPKVINIDEEAAGN 106 (117)
Q Consensus 44 FLA~Las~Lk~~s~fP~EpPaGs~~FRnLIagFmk~YHhIPl~~d-nVvvfPSR~~~~e~a~~~ 106 (117)
+...+...+......-|.|+.|...||.-||.+++.-+.++++++ +|+|.+.-..++..+++.
T Consensus 50 ~~~~~~~~~~~~~~~~Y~~~~g~~~lr~aia~~~~~~~g~~~~~~~~i~it~G~~~~l~~~~~~ 113 (389)
T PRK08068 50 IVEALQEAAENPANHKYSPFRGYPFLKEAAADFYKREYGVTLDPETEVAILFGGKAGLVELPQC 113 (389)
T ss_pred HHHHHHHHHhCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCccEEEcCCcHHHHHHHHHH
Confidence 456666666655556688999999999999999988789999999 899999888888776554
No 33
>PRK08912 hypothetical protein; Provisional
Probab=96.13 E-value=0.052 Score=42.03 Aligned_cols=95 Identities=11% Similarity=0.053 Sum_probs=64.3
Q ss_pred cccchHHHHHHHHhhcchhccccccccccccccccccchHHHHHHHHhhhCCCCCCCCCCcchhHHHHHHHHHHhhcccc
Q 040208 5 FISGQVKKIFEFLKNGFYEISSSLDLYFEDDLVADEKIPFLACLASALKEHSFFPYEPPAGTKRFQNLIADFMKMYHHIP 84 (117)
Q Consensus 5 ~~PnqVk~if~FLknGF~e~ssSLDLsFeddsVAdEKIpFLA~Las~Lk~~s~fP~EpPaGs~~FRnLIagFmk~YHhIP 84 (117)
.+++.+..+..++... ..+||.--+-.... -...+..+...+.+. ..-|.+|.|...||..|+.+++.++.++
T Consensus 11 ~~~~~~~~~~~~~~~~-----~~i~l~~g~p~~~~-p~~~~~~~~~~~~~~-~~~Y~~~~G~~~lr~~ia~~~~~~~g~~ 83 (387)
T PRK08912 11 LPTTIFEVMSQLAREH-----GAINLGQGFPDDPG-PEDVRRAAADALLDG-SNQYPPMMGLPELRQAVAAHYARFQGLD 83 (387)
T ss_pred CCCCHHHHHHHHHhhC-----CeEEccCCCCCCCC-CHHHHHHHHHHHhcC-CCCCCCCCCcHHHHHHHHHHHHHHhCCC
Confidence 3556666677766541 23444432211111 123556665566543 3558899999999999999999999999
Q ss_pred CCCC-CeeeccchhhhhhhhhcC
Q 040208 85 LNAD-CQSLQPKVINIDEEAAGN 106 (117)
Q Consensus 85 l~~d-nVvvfPSR~~~~e~a~~~ 106 (117)
++|+ ||++-++-..++..++..
T Consensus 84 ~~~~~~i~~t~G~~~al~~~~~~ 106 (387)
T PRK08912 84 LDPETEVMVTSGATEALAAALLA 106 (387)
T ss_pred CCCcccEEEeCCcHHHHHHHHHH
Confidence 9999 999999988888766543
No 34
>PRK09148 aminotransferase; Validated
Probab=96.12 E-value=0.022 Score=45.04 Aligned_cols=62 Identities=13% Similarity=0.074 Sum_probs=51.3
Q ss_pred HHHHHHHhhhCCCCCCCCCCcchhHHHHHHHHHHhhccccCCCC-CeeeccchhhhhhhhhcC
Q 040208 45 LACLASALKEHSFFPYEPPAGTKRFQNLIADFMKMYHHIPLNAD-CQSLQPKVINIDEEAAGN 106 (117)
Q Consensus 45 LA~Las~Lk~~s~fP~EpPaGs~~FRnLIagFmk~YHhIPl~~d-nVvvfPSR~~~~e~a~~~ 106 (117)
+..+.+.+++...+.|.+|.|...+|..||.+++....++++|+ ||++.+.-..++..+++.
T Consensus 49 ~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~~I~it~G~~~al~~~~~~ 111 (405)
T PRK09148 49 VDKLCETAQDPRTHRYSASKGIPGLRRAQAAYYARRFGVKLNPDTQVVATLGSKEGFANMAQA 111 (405)
T ss_pred HHHHHHHHcCcccCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCcEEEcCChHHHHHHHHHH
Confidence 44455666666678899999999999999999998778999998 899999888888777554
No 35
>PRK07683 aminotransferase A; Validated
Probab=96.10 E-value=0.05 Score=42.49 Aligned_cols=98 Identities=10% Similarity=0.099 Sum_probs=65.8
Q ss_pred cccccchHHHHHHHHhhcchhccccccccccccccccccchHHHHHHHHhhhCCCCCCCCCCcchhHHHHHHHHHHhhcc
Q 040208 3 STFISGQVKKIFEFLKNGFYEISSSLDLYFEDDLVADEKIPFLACLASALKEHSFFPYEPPAGTKRFQNLIADFMKMYHH 82 (117)
Q Consensus 3 ~~~~PnqVk~if~FLknGF~e~ssSLDLsFeddsVAdEKIpFLA~Las~Lk~~s~fP~EpPaGs~~FRnLIagFmk~YHh 82 (117)
++.++..++.++..+.+. ...+||+..+-....- -.+...+...+.+ ...-|.|++|...+|..||.++..-+-
T Consensus 10 ~~~~~~~~~~~~~~~~~~----~~~i~l~~~~p~~~~~-~~~~~a~~~~~~~-~~~~Y~~~~g~~~lr~~ia~~l~~~~g 83 (387)
T PRK07683 10 KDIQISGIRQFSNMVQNY----DNLISLTIGQPDFPTP-SHVKEAAKRAITE-NYTSYTHNAGLLELRKAACNFVKDKYD 83 (387)
T ss_pred HhCCccHHHHHHHHHHhc----CCeEEecCCCCCCCCC-HHHHHHHHHHHhc-CCCCCCCCCCCHHHHHHHHHHHHHHhC
Confidence 344566666666665432 3346666554221110 1134556666653 457788999999999999999987778
Q ss_pred ccCCCC-CeeeccchhhhhhhhhcC
Q 040208 83 IPLNAD-CQSLQPKVINIDEEAAGN 106 (117)
Q Consensus 83 IPl~~d-nVvvfPSR~~~~e~a~~~ 106 (117)
++++++ +|++.++-..++.-+++.
T Consensus 84 ~~~~~~~~I~~t~G~~~al~~~~~~ 108 (387)
T PRK07683 84 LHYSPESEIIVTIGASEAIDIAFRT 108 (387)
T ss_pred CCCCCCCcEEEeCChHHHHHHHHHH
Confidence 899999 999999888887766543
No 36
>PRK08363 alanine aminotransferase; Validated
Probab=96.00 E-value=0.024 Score=44.13 Aligned_cols=61 Identities=18% Similarity=0.184 Sum_probs=50.0
Q ss_pred HHHHHHHhhhCCCCCCCCCCcchhHHHHHHHHHHhhccccCCCCCeeeccchhhhhhhhhcC
Q 040208 45 LACLASALKEHSFFPYEPPAGTKRFQNLIADFMKMYHHIPLNADCQSLQPKVINIDEEAAGN 106 (117)
Q Consensus 45 LA~Las~Lk~~s~fP~EpPaGs~~FRnLIagFmk~YHhIPl~~dnVvvfPSR~~~~e~a~~~ 106 (117)
...+.+.+++. ...|.++.|...+|..|+.+++..+.++++++||++-++-..++.-+++.
T Consensus 52 ~~~~~~~~~~~-~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~it~G~~~al~~~~~~ 112 (398)
T PRK08363 52 KEAYCRAIKEG-HNYYGPSEGLPELREAIVKREKRKNGVDITPDDVRVTAAVTEALQLIFGA 112 (398)
T ss_pred HHHHHHHHHcC-CCCCCCCCCcHHHHHHHHHHHHHhcCCCCChhhEEEeCCHHHHHHHHHHH
Confidence 45555666543 34577899999999999999999999999999999999988888877654
No 37
>PRK05764 aspartate aminotransferase; Provisional
Probab=95.97 E-value=0.042 Score=42.22 Aligned_cols=100 Identities=12% Similarity=-0.005 Sum_probs=65.5
Q ss_pred cccchHHHHHHHHhhcchhccccccccccccccccccchHHHHHHHHhhhCCCCCCCCCCcchhHHHHHHHHHHhhcccc
Q 040208 5 FISGQVKKIFEFLKNGFYEISSSLDLYFEDDLVADEKIPFLACLASALKEHSFFPYEPPAGTKRFQNLIADFMKMYHHIP 84 (117)
Q Consensus 5 ~~PnqVk~if~FLknGF~e~ssSLDLsFeddsVAdEKIpFLA~Las~Lk~~s~fP~EpPaGs~~FRnLIagFmk~YHhIP 84 (117)
..|+.+..+++..+.=-++-..-+||+-.+-..... -...+.+...+.+. ..-|.++.|-..+|+.||.++...|.+.
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~~~~~~~~~~~~~-~~~Y~~~~g~~~lr~~ia~~~~~~~~~~ 88 (393)
T PRK05764 11 VTPSATLAVTAKAKELKAQGRDVISLGAGEPDFDTP-EHIKEAAIEALDDG-KTKYTPAAGIPELREAIAAKLKRDNGLD 88 (393)
T ss_pred cCchHHHHHHHHHHHHHhccCCEEEeCCCCCCCCCC-HHHHHHHHHHHhcC-CCCcCCCCChHHHHHHHHHHHHHHhCCC
Confidence 357777777777653111112334444433322110 12335555566543 3458889999999999999999999999
Q ss_pred CCCCCeeeccchhhhhhhhhcC
Q 040208 85 LNADCQSLQPKVINIDEEAAGN 106 (117)
Q Consensus 85 l~~dnVvvfPSR~~~~e~a~~~ 106 (117)
+++++|++.++...++..++..
T Consensus 89 ~~~~~i~~~~g~~~a~~~~~~~ 110 (393)
T PRK05764 89 YDPSQVIVTTGAKQALYNAFMA 110 (393)
T ss_pred CCHHHEEEeCCcHHHHHHHHHH
Confidence 9999999999888888776553
No 38
>TIGR01265 tyr_nico_aTase tyrosine/nicotianamine aminotransferases. This subfamily of pyridoxal phosphate-dependent enzymes includes known examples of both tyrosine aminotransferase from animals and nicotianamine aminotransferase from barley.
Probab=95.97 E-value=0.021 Score=44.77 Aligned_cols=63 Identities=19% Similarity=0.181 Sum_probs=53.4
Q ss_pred HHHHHHHHhhhCCCCCCCCCCcchhHHHHHHHHHHhhccccCCCCCeeeccchhhhhhhhhcC
Q 040208 44 FLACLASALKEHSFFPYEPPAGTKRFQNLIADFMKMYHHIPLNADCQSLQPKVINIDEEAAGN 106 (117)
Q Consensus 44 FLA~Las~Lk~~s~fP~EpPaGs~~FRnLIagFmk~YHhIPl~~dnVvvfPSR~~~~e~a~~~ 106 (117)
.+..+...+.......|.|+.|...+|..||.++.....+++++++|++.++-..++..+++.
T Consensus 53 ~~~~~~~~l~~~~~~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~ii~t~G~t~al~~~~~~ 115 (403)
T TIGR01265 53 AEEAVKDALRSGKFNGYAPSVGALAAREAVAEYLSSDLPGKLTADDVVLTSGCSQAIEICIEA 115 (403)
T ss_pred HHHHHHHHHhcCCCCCCCCCCCCHHHHHHHHHHHHhhcCCCCCHHHEEEecChHHHHHHHHHH
Confidence 455666777666666888999999999999999998778999999999999999998877664
No 39
>PRK07309 aromatic amino acid aminotransferase; Validated
Probab=95.92 E-value=0.078 Score=41.50 Aligned_cols=62 Identities=13% Similarity=0.070 Sum_probs=49.3
Q ss_pred HHHHHHHHhhhCCCCCCCCCCcchhHHHHHHHHHHhhccccCCC-CCeeeccchhhhhhhhhcC
Q 040208 44 FLACLASALKEHSFFPYEPPAGTKRFQNLIADFMKMYHHIPLNA-DCQSLQPKVINIDEEAAGN 106 (117)
Q Consensus 44 FLA~Las~Lk~~s~fP~EpPaGs~~FRnLIagFmk~YHhIPl~~-dnVvvfPSR~~~~e~a~~~ 106 (117)
+...+...+.+. ..-|.||.|...||..|+-++...+.+++++ ++|++.+.-..+++-+++.
T Consensus 48 ~~~~~~~~~~~~-~~~Y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~~i~it~G~~~al~~~~~~ 110 (391)
T PRK07309 48 VKEAAKRAIDAN-QSHYTGMAGLLELRQAAADFVKEKYNLDYAPENEILVTIGATEALSASLTA 110 (391)
T ss_pred HHHHHHHHHhcC-CCCCCCCCCcHHHHHHHHHHHHHHhCCCCCCCCcEEEeCChHHHHHHHHHH
Confidence 445555555532 2237789999999999999999999999985 7999999998888887664
No 40
>PLN02376 1-aminocyclopropane-1-carboxylate synthase
Probab=95.91 E-value=0.018 Score=48.25 Aligned_cols=47 Identities=17% Similarity=0.259 Sum_probs=43.2
Q ss_pred CCCCCcchhHHHHHHHHHHhhcc--ccCCCCCeeeccchhhhhhhhhcC
Q 040208 60 YEPPAGTKRFQNLIADFMKMYHH--IPLNADCQSLQPKVINIDEEAAGN 106 (117)
Q Consensus 60 ~EpPaGs~~FRnLIagFmk~YHh--IPl~~dnVvvfPSR~~~~e~a~~~ 106 (117)
|-++.|...||+.||.||..+++ ++++|++||+-+.-..+++.+++.
T Consensus 90 y~~~~G~~~LR~aiA~~l~~~~g~~v~v~pe~Ivit~Ga~~al~~l~~~ 138 (496)
T PLN02376 90 FQDYHGLKKFRQAIAHFMGKARGGKVTFDPERVVMSGGATGANETIMFC 138 (496)
T ss_pred cCCCCCcHHHHHHHHHHHHHHhCCCCcCChhhEEEccchHHHHHHHHHH
Confidence 77899999999999999999988 999999999999999999987664
No 41
>PLN02450 1-aminocyclopropane-1-carboxylate synthase
Probab=95.83 E-value=0.016 Score=47.65 Aligned_cols=90 Identities=19% Similarity=0.241 Sum_probs=63.8
Q ss_pred HHHHhhcchhccccccccccccccccccchHHHHHHHHhhhCC---------------CCCCCCCCcchhHHHHHHHHHH
Q 040208 14 FEFLKNGFYEISSSLDLYFEDDLVADEKIPFLACLASALKEHS---------------FFPYEPPAGTKRFQNLIADFMK 78 (117)
Q Consensus 14 f~FLknGF~e~ssSLDLsFeddsVAdEKIpFLA~Las~Lk~~s---------------~fP~EpPaGs~~FRnLIagFmk 78 (117)
.++.++.++..+..- -.=+.++|+-++++ .-+...++.+. ..-|.+|.|+..+|..||-|+.
T Consensus 24 ~~~~~~~y~~~~~p~--g~i~L~~~En~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Y~~~~G~~~LR~aiA~~l~ 100 (468)
T PLN02450 24 EEYEKNPYDEIKNPS--GIIQMGLAENQLSF-DLIESWLAKNPDAAGLKRNGQSIFRELALFQDYHGLPAFKNALAEFMS 100 (468)
T ss_pred HHHhcCCCCcccCCC--eeEEeehhHhHhhH-HHHHHHHHhCchhhhcccccccchhhhhcCCCCCChHHHHHHHHHHHH
Confidence 345555666654221 11233567777777 77777776641 1227788999999999999998
Q ss_pred hhcc--ccCCCCCeeeccchhhhhhhhhcC
Q 040208 79 MYHH--IPLNADCQSLQPKVINIDEEAAGN 106 (117)
Q Consensus 79 ~YHh--IPl~~dnVvvfPSR~~~~e~a~~~ 106 (117)
.+.+ ++++|++|+|-+.-..+++.++..
T Consensus 101 ~~~~~~~~v~~~~Iiit~Ga~~al~~l~~~ 130 (468)
T PLN02450 101 EIRGNKVTFDPNKLVLTAGATSANETLMFC 130 (468)
T ss_pred HhhCCCCCcChHHeEEccChHHHHHHHHHH
Confidence 7755 668999999999888888887664
No 42
>PRK08175 aminotransferase; Validated
Probab=95.79 E-value=0.042 Score=42.89 Aligned_cols=61 Identities=8% Similarity=0.060 Sum_probs=48.4
Q ss_pred HHHHHHHhhhCCCCCCCCCCcchhHHHHHHHHHHhhccccCCCC-Ceeeccchhhhhhhhhc
Q 040208 45 LACLASALKEHSFFPYEPPAGTKRFQNLIADFMKMYHHIPLNAD-CQSLQPKVINIDEEAAG 105 (117)
Q Consensus 45 LA~Las~Lk~~s~fP~EpPaGs~~FRnLIagFmk~YHhIPl~~d-nVvvfPSR~~~~e~a~~ 105 (117)
+.-+...+.+...+-|.+|.|...+|..|+.++...+.++++|+ ||++-+....++..+++
T Consensus 48 ~~~~~~~~~~~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~~i~~t~G~~~~l~~~~~ 109 (395)
T PRK08175 48 VEKLCEVAQRPDTHGYSTSRGIPRLRRAISRWYQDRYDVDIDPESEAIVTIGSKEGLAHLML 109 (395)
T ss_pred HHHHHHHHhCCCcCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCcEEEccCcHHHHHHHHH
Confidence 44455555555567799999999999999999999889999998 79888877777766543
No 43
>PRK12414 putative aminotransferase; Provisional
Probab=95.74 E-value=0.044 Score=42.78 Aligned_cols=77 Identities=16% Similarity=0.144 Sum_probs=56.7
Q ss_pred cccccccccccccccch-HHHHHHHHhhhCCCCCCCCCCcchhHHHHHHHHHHhhccccCCC-CCeeeccchhhhhhhhh
Q 040208 27 SLDLYFEDDLVADEKIP-FLACLASALKEHSFFPYEPPAGTKRFQNLIADFMKMYHHIPLNA-DCQSLQPKVINIDEEAA 104 (117)
Q Consensus 27 SLDLsFeddsVAdEKIp-FLA~Las~Lk~~s~fP~EpPaGs~~FRnLIagFmk~YHhIPl~~-dnVvvfPSR~~~~e~a~ 104 (117)
.++|+..+-.... .| +...+.+.+.. ...-|.|+.|...+|.-|+.+++.+.+++.++ ++|++.++-..+++.++
T Consensus 31 ~i~l~~g~p~~~~--~~~~~~~~~~~~~~-~~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~~i~it~g~~~al~~~~ 107 (384)
T PRK12414 31 ALNLSQGAPNFAP--DPALVEGVARAMRD-GHNQYAPMAGIAALREALAEKTERLYGARYDPASEVTVIASASEGLYAAI 107 (384)
T ss_pred eEEcCCCCCCCCC--CHHHHHHHHHHHHh-CCCCcCCCCCcHHHHHHHHHHHHHHhCCCCCCCCcEEEECChHHHHHHHH
Confidence 4566554433210 11 34455555543 34678999999999999999999999999987 68999999999999887
Q ss_pred cC
Q 040208 105 GN 106 (117)
Q Consensus 105 ~~ 106 (117)
+.
T Consensus 108 ~~ 109 (384)
T PRK12414 108 SA 109 (384)
T ss_pred HH
Confidence 64
No 44
>PLN00175 aminotransferase family protein; Provisional
Probab=95.72 E-value=0.044 Score=43.80 Aligned_cols=61 Identities=10% Similarity=0.074 Sum_probs=50.7
Q ss_pred HHHHHHHHhhhCCCCCCCCCCcchhHHHHHHHHHHhhccccCCCC-Ceeeccchhhhhhhhhc
Q 040208 44 FLACLASALKEHSFFPYEPPAGTKRFQNLIADFMKMYHHIPLNAD-CQSLQPKVINIDEEAAG 105 (117)
Q Consensus 44 FLA~Las~Lk~~s~fP~EpPaGs~~FRnLIagFmk~YHhIPl~~d-nVvvfPSR~~~~e~a~~ 105 (117)
....+...+++. ...|.++.|...+|+.|+.+++..++++++++ +|+|-+.-..++..+++
T Consensus 72 ~~~~~~~~~~~~-~~~Y~~~~G~~~Lr~aia~~~~~~~g~~~~~~~~I~vt~G~~~al~~~~~ 133 (413)
T PLN00175 72 VKEAAIQAIRDG-KNQYARGFGVPELNSAIAERFKKDTGLVVDPEKEVTVTSGCTEAIAATIL 133 (413)
T ss_pred HHHHHHHHHhcC-CCCcCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCEEEeCCHHHHHHHHHH
Confidence 356677777763 46789999999999999999999999999998 69998887777776655
No 45
>TIGR03538 DapC_gpp succinyldiaminopimelate transaminase. This family of succinyldiaminopimelate transaminases (DapC) includes the experimentally characterized enzyme from Bordatella pertussis. The majority of genes in this family are proximal to genes encoding components of the lysine biosynthesis via diaminopimelate pathway (GenProp0125).
Probab=95.63 E-value=0.041 Score=42.79 Aligned_cols=95 Identities=14% Similarity=0.158 Sum_probs=62.4
Q ss_pred ccchHHHHHHHHhhcchh--ccccccccccccccccccch--HHHHHHHHhhhCCCCCCCCCCcchhHHHHHHHHHHhhc
Q 040208 6 ISGQVKKIFEFLKNGFYE--ISSSLDLYFEDDLVADEKIP--FLACLASALKEHSFFPYEPPAGTKRFQNLIADFMKMYH 81 (117)
Q Consensus 6 ~PnqVk~if~FLknGF~e--~ssSLDLsFeddsVAdEKIp--FLA~Las~Lk~~s~fP~EpPaGs~~FRnLIagFmk~YH 81 (117)
.+..+..|.+.+.. ... =...+||+--+-.. ..| ....+.+.+. ..+-|.+|.|...+|..||.+++..|
T Consensus 8 ~~~~~~~~~~~~~~-~~~~~~~~~i~l~~~~p~~---~~~~~~~~a~~~~~~--~~~~Y~~~~G~~~lr~aia~~~~~~~ 81 (393)
T TIGR03538 8 QPYPFEKLAALLAG-VTPPASKPPIALSIGEPKH---PTPAFVLEALRENLH--GLSTYPTTKGLPELRQAIARWLERRF 81 (393)
T ss_pred CccHHHHHHHHHHh-hhhhcCCCeEEecCCCCCC---CCCHHHHHHHHHHhh--ccCCCCCCCCCHHHHHHHHHHHHHhh
Confidence 44566667776631 111 12345555443221 222 2233333332 35668899999999999999999999
Q ss_pred ccc--CCCC-CeeeccchhhhhhhhhcC
Q 040208 82 HIP--LNAD-CQSLQPKVINIDEEAAGN 106 (117)
Q Consensus 82 hIP--l~~d-nVvvfPSR~~~~e~a~~~ 106 (117)
+++ ++++ ||+|-+.-..++..+++.
T Consensus 82 ~~~~~~~~~~~i~it~Ga~~al~~~~~~ 109 (393)
T TIGR03538 82 DLPTGVDPERHVLPVNGTREALFAFAQA 109 (393)
T ss_pred CCcccCCCCceEEECCCcHHHHHHHHHH
Confidence 998 8995 899999988888887663
No 46
>PTZ00433 tyrosine aminotransferase; Provisional
Probab=95.33 E-value=0.059 Score=42.58 Aligned_cols=64 Identities=16% Similarity=0.137 Sum_probs=52.5
Q ss_pred HHHHHHHHhhhCCCCCCCCCCcchhHHHHHHHHHHhhc------cccCCCCCeeeccchhhhhhhhhcCC
Q 040208 44 FLACLASALKEHSFFPYEPPAGTKRFQNLIADFMKMYH------HIPLNADCQSLQPKVINIDEEAAGNS 107 (117)
Q Consensus 44 FLA~Las~Lk~~s~fP~EpPaGs~~FRnLIagFmk~YH------hIPl~~dnVvvfPSR~~~~e~a~~~~ 107 (117)
+...+.+.+......-|.+|.|...+|..||.+++..+ .+++.+++|++-+.-..++..+++.-
T Consensus 55 ~~~a~~~~~~~~~~~~Y~~~~G~~~Lr~aia~~~~~~~~~~~~~~~~~~~~~i~it~G~~~al~~~~~~~ 124 (412)
T PTZ00433 55 QTKALVEAVDSQECNGYPPTVGSPEAREAVATYWRNSFVHKESLKSTIKKDNVVLCSGVSHAILMALTAL 124 (412)
T ss_pred HHHHHHHHhhcCCCCCCCCCCCcHHHHHHHHHHHHhhccccccccCCCChhhEEEeCChHHHHHHHHHHh
Confidence 56667777776566678889999999999999998643 47899999999999999988877643
No 47
>PRK03317 histidinol-phosphate aminotransferase; Provisional
Probab=95.28 E-value=0.048 Score=41.93 Aligned_cols=77 Identities=14% Similarity=0.170 Sum_probs=53.6
Q ss_pred cccccccccccccccch-HHHHHHHHhhhC--CCCCCCCCCcchhHHHHHHHHHHhhccccCCCCCeeeccchhhhhhhh
Q 040208 27 SLDLYFEDDLVADEKIP-FLACLASALKEH--SFFPYEPPAGTKRFQNLIADFMKMYHHIPLNADCQSLQPKVINIDEEA 103 (117)
Q Consensus 27 SLDLsFeddsVAdEKIp-FLA~Las~Lk~~--s~fP~EpPaGs~~FRnLIagFmk~YHhIPl~~dnVvvfPSR~~~~e~a 103 (117)
.+||+.-+... .--| .+..|.+.|++. ...-| |+.|...+|..||.+++..++++++++||+|-+.-..++.-+
T Consensus 28 ~i~l~~~~~~~--~~~~~~~~al~~~l~~~~~~~~~Y-~~~g~~~lr~aia~~~~~~~~~~~~~~~I~it~G~~~~l~~~ 104 (368)
T PRK03317 28 PVRLNTNENPY--PPSPALVADIAEAVAEAAAGLNRY-PDRDAVALRADLAAYLTAQTGVGLTVENVWAANGSNEILQQL 104 (368)
T ss_pred eeEecCCCCCC--CCCHHHHHHHHHHHhhhhhhhccC-CCCchHHHHHHHHHHhhhhccCCCChhhEEECCCHHHHHHHH
Confidence 46666554321 1111 355566666532 22333 345899999999999999989999999999999988888877
Q ss_pred hcC
Q 040208 104 AGN 106 (117)
Q Consensus 104 ~~~ 106 (117)
++.
T Consensus 105 ~~~ 107 (368)
T PRK03317 105 LQA 107 (368)
T ss_pred HHH
Confidence 664
No 48
>PTZ00377 alanine aminotransferase; Provisional
Probab=95.17 E-value=0.065 Score=43.69 Aligned_cols=59 Identities=14% Similarity=0.027 Sum_probs=49.8
Q ss_pred HHHHhhhC--CCCCCCCCCcchhHHHHHHHHHHhhccccCCCCCeeeccchhhhhhhhhcC
Q 040208 48 LASALKEH--SFFPYEPPAGTKRFQNLIADFMKMYHHIPLNADCQSLQPKVINIDEEAAGN 106 (117)
Q Consensus 48 Las~Lk~~--s~fP~EpPaGs~~FRnLIagFmk~YHhIPl~~dnVvvfPSR~~~~e~a~~~ 106 (117)
...++++. ...-|.++.|...+|..||.+++..++++++|++|+|-+.-..++..+++.
T Consensus 97 ~~~~~~~~~~~~~~Y~~~~G~~~LR~aia~~~~~~~g~~~~~~~I~it~Ga~~al~~~~~~ 157 (481)
T PTZ00377 97 AKEYLNAIGGGTGAYTDSAGYPFVRKAVAAFIERRDGVPKDPSDIFLTDGASSGIKLLLQL 157 (481)
T ss_pred HHHHHHhCCCcccCcCcccCCHHHHHHHHHHHHHhcCCCCChhhEEEcCCHHHHHHHHHHH
Confidence 34455542 346688999999999999999999999999999999999999999988764
No 49
>PRK06836 aspartate aminotransferase; Provisional
Probab=95.17 E-value=0.092 Score=41.13 Aligned_cols=62 Identities=21% Similarity=0.207 Sum_probs=50.4
Q ss_pred HHHHHHHHhhhC--CCCCCCCCCcchhHHHHHHHHHHhhccccCCCCCeeeccchhhhhhhhhc
Q 040208 44 FLACLASALKEH--SFFPYEPPAGTKRFQNLIADFMKMYHHIPLNADCQSLQPKVINIDEEAAG 105 (117)
Q Consensus 44 FLA~Las~Lk~~--s~fP~EpPaGs~~FRnLIagFmk~YHhIPl~~dnVvvfPSR~~~~e~a~~ 105 (117)
+...+..++++. +..-|.++.|...+|..||.++...+.++++|+||++.++-..++.-+++
T Consensus 51 v~~a~~~~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~t~G~~~al~~~~~ 114 (394)
T PRK06836 51 VKEALRELAEEEDPGLHGYMPNAGYPEVREAIAESLNRRFGTPLTADHIVMTCGAAGALNVALK 114 (394)
T ss_pred HHHHHHHHHhcCCcCcccCCCCCCCHHHHHHHHHHHHHHhCCCCCcCcEEEeCChHHHHHHHHH
Confidence 455666666643 35678899999999999999999988899999999999988877776554
No 50
>PLN02368 alanine transaminase
Probab=95.13 E-value=0.052 Score=44.27 Aligned_cols=51 Identities=12% Similarity=0.118 Sum_probs=45.8
Q ss_pred CCCCCCCCCcchhHHHHHHHHHHhhccccCCCCCeeeccchhhhhhhhhcC
Q 040208 56 SFFPYEPPAGTKRFQNLIADFMKMYHHIPLNADCQSLQPKVINIDEEAAGN 106 (117)
Q Consensus 56 s~fP~EpPaGs~~FRnLIagFmk~YHhIPl~~dnVvvfPSR~~~~e~a~~~ 106 (117)
...-|.++.|...+|..||.+++.++.++++|+||+|-+.-..++..+++.
T Consensus 99 ~~~~Y~~~~G~~~LR~aia~~~~~~~g~~~~~~~I~it~Ga~~al~~~~~~ 149 (407)
T PLN02368 99 GLGAYSDSRGLPGVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQILNA 149 (407)
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHhcCCCCChhhEEEcccHHHHHHHHHHH
Confidence 456788999999999999999999999999999999999988888887763
No 51
>PLN02231 alanine transaminase
Probab=95.12 E-value=0.065 Score=45.63 Aligned_cols=53 Identities=13% Similarity=0.043 Sum_probs=47.7
Q ss_pred CCCCCCCCCCcchhHHHHHHHHHHhhccccCCCCCeeeccchhhhhhhhhcCC
Q 040208 55 HSFFPYEPPAGTKRFQNLIADFMKMYHHIPLNADCQSLQPKVINIDEEAAGNS 107 (117)
Q Consensus 55 ~s~fP~EpPaGs~~FRnLIagFmk~YHhIPl~~dnVvvfPSR~~~~e~a~~~~ 107 (117)
.+.+-|.++.|...+|..||.|++..+++|++|+||+|.+.-..++..+++.-
T Consensus 159 ~~~~~Y~~s~G~~~lReaIA~~~~~r~g~~~~pe~I~iT~Ga~~ai~~~~~~l 211 (534)
T PLN02231 159 RATGAYSHSQGIKGLRDAIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLL 211 (534)
T ss_pred ccccCcCCCCCcHHHHHHHHHHHHhccCCCCCcccEEEeCCHHHHHHHHHHHh
Confidence 35677999999999999999999998999999999999999999998887643
No 52
>PRK09082 methionine aminotransferase; Validated
Probab=95.11 E-value=0.097 Score=40.77 Aligned_cols=62 Identities=18% Similarity=0.110 Sum_probs=51.1
Q ss_pred HHHHHHHHhhhCCCCCCCCCCcchhHHHHHHHHHHhhccccCCCC-CeeeccchhhhhhhhhcC
Q 040208 44 FLACLASALKEHSFFPYEPPAGTKRFQNLIADFMKMYHHIPLNAD-CQSLQPKVINIDEEAAGN 106 (117)
Q Consensus 44 FLA~Las~Lk~~s~fP~EpPaGs~~FRnLIagFmk~YHhIPl~~d-nVvvfPSR~~~~e~a~~~ 106 (117)
++..+.+.+... .+.|.++.|...+|..++.+++.+|+++..++ +|++.++--.+++.++..
T Consensus 48 ~~~~~~~~~~~~-~~~Y~~~~G~~~lr~~~a~~l~~~~~~~~~~~~~i~~t~G~~~al~~~~~~ 110 (386)
T PRK09082 48 LVEALAYAMAAG-HNQYPPMTGVAALREAIAAKTARLYGRQYDADSEITVTAGATEALFAAILA 110 (386)
T ss_pred HHHHHHHHHHcC-CCCCCCCCCcHHHHHHHHHHHHHHhCCCCCCCCcEEEeCCHHHHHHHHHHH
Confidence 566777777643 46789999999999999999999999998886 899888888888877653
No 53
>PRK06290 aspartate aminotransferase; Provisional
Probab=94.82 E-value=0.14 Score=41.26 Aligned_cols=78 Identities=10% Similarity=0.067 Sum_probs=54.4
Q ss_pred cccccccccccccccchHHHHHHHHhhhCCCCCCCCCCcchhHHHHHHHHHHhhcccc-CCCC-Ceeeccchhhhhhhhh
Q 040208 27 SLDLYFEDDLVADEKIPFLACLASALKEHSFFPYEPPAGTKRFQNLIADFMKMYHHIP-LNAD-CQSLQPKVINIDEEAA 104 (117)
Q Consensus 27 SLDLsFeddsVAdEKIpFLA~Las~Lk~~s~fP~EpPaGs~~FRnLIagFmk~YHhIP-l~~d-nVvvfPSR~~~~e~a~ 104 (117)
-+||+.-+-...... ..++.|.+.++.....=| |+.|...+|..||.+|+...++. ++|+ ||++-+.-..++.-++
T Consensus 46 ~i~L~~g~p~~~~~~-~~~~~l~~~~~~~~~~~Y-~~~G~~~lr~aia~~~~~~~g~~~~~~~~~I~it~Gs~~al~~~~ 123 (410)
T PRK06290 46 LIDMGVGEPDEMADE-SVVEVLCEEAKKPENRGY-ADNGIQEFKEAAARYMEKVFGVKDIDPVTEVIHSIGSKPALAMLP 123 (410)
T ss_pred eEEcCCCCCCCCCCH-HHHHHHHHHHhCCCCCCC-CCCCcHHHHHHHHHHHHHHcCCCcCCCcceEEEccCHHHHHHHHH
Confidence 466666554333221 245556665554333223 35899999999999999888888 9997 7999998888888776
Q ss_pred cC
Q 040208 105 GN 106 (117)
Q Consensus 105 ~~ 106 (117)
+.
T Consensus 124 ~~ 125 (410)
T PRK06290 124 SC 125 (410)
T ss_pred HH
Confidence 54
No 54
>PRK02610 histidinol-phosphate aminotransferase; Provisional
Probab=94.71 E-value=0.073 Score=41.39 Aligned_cols=61 Identities=13% Similarity=0.091 Sum_probs=45.8
Q ss_pred HHHHHHHHhhhCC-CCCCCCCCcchhHHHHHHHHHHhhc--cccCCCCCeeeccchhhhhhhhhc
Q 040208 44 FLACLASALKEHS-FFPYEPPAGTKRFQNLIADFMKMYH--HIPLNADCQSLQPKVINIDEEAAG 105 (117)
Q Consensus 44 FLA~Las~Lk~~s-~fP~EpPaGs~~FRnLIagFmk~YH--hIPl~~dnVvvfPSR~~~~e~a~~ 105 (117)
....+.+.+.+.. ..=| |+.|...+|..||.+++..+ +++++++||+|-+.-..++..++.
T Consensus 46 ~~~~~~~~~~~~~~~~~Y-~~~G~~~Lr~aia~~~~~~~~~~~~v~~~~I~it~Ga~~al~~~~~ 109 (374)
T PRK02610 46 LKQKLAWLYQQGIESNRY-PDGGHEALKQAIAEYVNESAAGSSQITPANISVGNGSDELIRSLLI 109 (374)
T ss_pred HHHHHHHHHhhcccccCC-CCCchHHHHHHHHHHhCccccccCCCCHHHEEEcCChHHHHHHHHH
Confidence 4556666666531 1223 45699999999999998765 689999999999999999986643
No 55
>PRK09257 aromatic amino acid aminotransferase; Provisional
Probab=94.70 E-value=0.088 Score=41.15 Aligned_cols=80 Identities=15% Similarity=0.107 Sum_probs=55.4
Q ss_pred ccccccccccccccccchHHHH----HHHHhhhCCCCCCCCCCcchhHHHHHHHHHHhhccccCCCCCe--eeccchhhh
Q 040208 26 SSLDLYFEDDLVADEKIPFLAC----LASALKEHSFFPYEPPAGTKRFQNLIADFMKMYHHIPLNADCQ--SLQPKVINI 99 (117)
Q Consensus 26 sSLDLsFeddsVAdEKIpFLA~----Las~Lk~~s~fP~EpPaGs~~FRnLIagFmk~YHhIPl~~dnV--vvfPSR~~~ 99 (117)
.-+||+--.-.-.|.+.|.+.. +...+++.....|.|+.|...+|..||.++...++..+++++| +|-+.-..+
T Consensus 27 ~~i~l~~g~~~~~~~~~p~~~~l~~a~~~~~~~~~~~~Y~~~~G~~~lR~aia~~~~~~~~~~~~~~~i~v~iT~Ga~~a 106 (396)
T PRK09257 27 DKVNLGVGVYKDEQGRTPVLRAVKKAEARLLETETTKNYLPIEGLAAYRQAVQELLFGADSPALAAGRVATVQTPGGTGA 106 (396)
T ss_pred CcEecceeeEECCCCCEeccHHHHHHHHHhcccccCCCcCCCCCCHHHHHHHHHHhcCCCCcccccCeEEEEecCCccHH
Confidence 4566666431112345553223 3333444455679999999999999999998887778899987 888888888
Q ss_pred hhhhhc
Q 040208 100 DEEAAG 105 (117)
Q Consensus 100 ~e~a~~ 105 (117)
+.-+++
T Consensus 107 l~~~~~ 112 (396)
T PRK09257 107 LRVGAD 112 (396)
T ss_pred HHHHHH
Confidence 887754
No 56
>PRK07568 aspartate aminotransferase; Provisional
Probab=94.61 E-value=0.14 Score=39.47 Aligned_cols=49 Identities=14% Similarity=0.093 Sum_probs=42.9
Q ss_pred CCCCCCCCcchhHHHHHHHHHHhhccccCCCCCeeeccchhhhhhhhhcC
Q 040208 57 FFPYEPPAGTKRFQNLIADFMKMYHHIPLNADCQSLQPKVINIDEEAAGN 106 (117)
Q Consensus 57 ~fP~EpPaGs~~FRnLIagFmk~YHhIPl~~dnVvvfPSR~~~~e~a~~~ 106 (117)
..-|.|+.|...+|..||.+++ -|.+++++++|++.++-..++.-++..
T Consensus 59 ~~~Y~~~~g~~~lr~~ia~~~~-~~~~~~~~~~i~~t~G~~~al~~~~~~ 107 (397)
T PRK07568 59 VLAYSHSQGIPELREAFAKYYK-KWGIDVEPDEILITNGGSEAILFAMMA 107 (397)
T ss_pred CcCcCCCCCCHHHHHHHHHHHH-HhCCCCCcceEEEcCChHHHHHHHHHH
Confidence 4457789999999999999998 478999999999999999988887654
No 57
>PRK06225 aspartate aminotransferase; Provisional
Probab=94.42 E-value=0.12 Score=39.84 Aligned_cols=57 Identities=16% Similarity=0.238 Sum_probs=47.9
Q ss_pred HHHHHHHHhhhCCCCCCCCCCcchhHHHHHHHHHHhhccccCCCCCeeeccchhhhhhhhhcC
Q 040208 44 FLACLASALKEHSFFPYEPPAGTKRFQNLIADFMKMYHHIPLNADCQSLQPKVINIDEEAAGN 106 (117)
Q Consensus 44 FLA~Las~Lk~~s~fP~EpPaGs~~FRnLIagFmk~YHhIPl~~dnVvvfPSR~~~~e~a~~~ 106 (117)
++.++...+.+..+..|.+|.|...+|..||.++ ...++||++.++...++..+++.
T Consensus 46 ~~~a~~~~~~~~~~~~y~~~~g~~~lr~~ia~~l------~~~~~~v~~~~g~t~al~~~~~~ 102 (380)
T PRK06225 46 VREAMIRCIEEGEYCKYPPPEGFPELRELILKDL------GLDDDEALITAGATESLYLVMRA 102 (380)
T ss_pred HHHHHHHHHhcCCCCCCCCCcchHHHHHHHHHhc------CCCCCcEEEeCCHHHHHHHHHHH
Confidence 4567777777767788999999999999999875 35789999999999999988764
No 58
>PRK07865 N-succinyldiaminopimelate aminotransferase; Reviewed
Probab=94.20 E-value=0.096 Score=40.22 Aligned_cols=47 Identities=13% Similarity=0.119 Sum_probs=41.4
Q ss_pred CCCCCCcchhHHHHHHHHHHhhcccc-CCCCCeeeccchhhhhhhhhc
Q 040208 59 PYEPPAGTKRFQNLIADFMKMYHHIP-LNADCQSLQPKVINIDEEAAG 105 (117)
Q Consensus 59 P~EpPaGs~~FRnLIagFmk~YHhIP-l~~dnVvvfPSR~~~~e~a~~ 105 (117)
=|.+|.|...+|..||.++...+.++ +++++|+|-+.-..++.-++.
T Consensus 57 ~Y~~~~G~~~lr~~ia~~l~~~~~~~~~~~~~I~it~G~~~~i~~~~~ 104 (364)
T PRK07865 57 GYPTTAGTPELREAIVGWLARRRGVTGLDPAAVLPVIGSKELVAWLPT 104 (364)
T ss_pred CCCCccCCHHHHHHHHHHHHHHcCCCCCCcccEEEccChHHHHHHHHH
Confidence 36688999999999999999999998 999999999988888876543
No 59
>PTZ00376 aspartate aminotransferase; Provisional
Probab=94.12 E-value=0.13 Score=40.55 Aligned_cols=52 Identities=10% Similarity=-0.042 Sum_probs=42.1
Q ss_pred hhCCCCCCCCCCcchhHHHHHHHHHHhhccccCCCCCeee--ccchhhhhhhhh
Q 040208 53 KEHSFFPYEPPAGTKRFQNLIADFMKMYHHIPLNADCQSL--QPKVINIDEEAA 104 (117)
Q Consensus 53 k~~s~fP~EpPaGs~~FRnLIagFmk~YHhIPl~~dnVvv--fPSR~~~~e~a~ 104 (117)
.......|.||.|...+|..||.++...++++++|++|++ .+.-..+++.++
T Consensus 61 ~~~~~~~Y~~~~G~~~lR~aia~~~~~~~~~~~~~~~v~~~~t~G~~~al~~~~ 114 (404)
T PTZ00376 61 EKNLDKEYLPIEGLQSFIEAAQKLLFGEASYALAEKRIATVQALSGTGALRLGF 114 (404)
T ss_pred cccCCCCCCCCCCCHHHHHHHHHHhcCCCccccccCeEEEeeccCcchHHHHHH
Confidence 3455688999999999999999999888888899999984 666666666554
No 60
>PRK09265 aminotransferase AlaT; Validated
Probab=93.61 E-value=0.49 Score=37.13 Aligned_cols=50 Identities=12% Similarity=0.013 Sum_probs=42.8
Q ss_pred CCCCCCCCcchhHHHHHHHHHHhhccccCCCCCeeeccchhhhhhhhhcC
Q 040208 57 FFPYEPPAGTKRFQNLIADFMKMYHHIPLNADCQSLQPKVINIDEEAAGN 106 (117)
Q Consensus 57 ~fP~EpPaGs~~FRnLIagFmk~YHhIPl~~dnVvvfPSR~~~~e~a~~~ 106 (117)
..-|.+|.|...+|..||.++...+.+.++++||++-+.-..++.-+++.
T Consensus 65 ~~~Y~~~~G~~~lr~~ia~~~~~~~~~~~~~~~i~~t~G~~~~l~~~~~~ 114 (404)
T PRK09265 65 AQGYSDSKGLFSARKAIMQYYQQKGIPDVDVDDIYIGNGVSELIVMAMQA 114 (404)
T ss_pred CCCCCCCCCcHHHHHHHHHHHhccCCCCCCcccEEEeCChHHHHHHHHHH
Confidence 35578999999999999999988766689999999999988888877653
No 61
>PRK13355 bifunctional HTH-domain containing protein/aminotransferase; Provisional
Probab=93.30 E-value=0.29 Score=40.42 Aligned_cols=77 Identities=13% Similarity=0.089 Sum_probs=54.1
Q ss_pred cccccccccccccccch--HHHHHHHHhhhCCCCCCCCCCcchhHHHHHHHHHHhhccccCCCCCeeeccchhhhhhhhh
Q 040208 27 SLDLYFEDDLVADEKIP--FLACLASALKEHSFFPYEPPAGTKRFQNLIADFMKMYHHIPLNADCQSLQPKVINIDEEAA 104 (117)
Q Consensus 27 SLDLsFeddsVAdEKIp--FLA~Las~Lk~~s~fP~EpPaGs~~FRnLIagFmk~YHhIPl~~dnVvvfPSR~~~~e~a~ 104 (117)
-++|+--+...-+-..| .+..+...+.+. .-|.++.|...+|..||.+++..+...++++||+|-+.-..++..++
T Consensus 148 ~i~l~~G~p~~~~~~~p~~~~~~~~~~~~~~--~~Y~~~~G~~~lReaia~~~~~~~~~~~~~~~I~it~G~~eal~~~~ 225 (517)
T PRK13355 148 ILKLNIGNPAPFGFRTPDEVVYDMAQQLTDT--EGYSDSKGLFSARKAIMQYAQLKGLPNVDVDDIYTGNGVSELINLSM 225 (517)
T ss_pred eEEecCcCCCcCCCCCCHHHHHHHHHHhhcC--CCCCCCcChHHHHHHHHHHHHhcCCCCCChhHEEEeCcHHHHHHHHH
Confidence 35555533322232233 344455555543 35788999999999999999887766799999999998888887766
Q ss_pred c
Q 040208 105 G 105 (117)
Q Consensus 105 ~ 105 (117)
+
T Consensus 226 ~ 226 (517)
T PRK13355 226 S 226 (517)
T ss_pred H
Confidence 5
No 62
>PRK05957 aspartate aminotransferase; Provisional
Probab=92.25 E-value=0.68 Score=36.25 Aligned_cols=61 Identities=15% Similarity=0.089 Sum_probs=49.8
Q ss_pred HHHHHHHhhhCCCCCCCCCCcchhHHHHHHHHHHhhccccCC-CCCeeeccchhhhhhhhhc
Q 040208 45 LACLASALKEHSFFPYEPPAGTKRFQNLIADFMKMYHHIPLN-ADCQSLQPKVINIDEEAAG 105 (117)
Q Consensus 45 LA~Las~Lk~~s~fP~EpPaGs~~FRnLIagFmk~YHhIPl~-~dnVvvfPSR~~~~e~a~~ 105 (117)
+..+...+.......|.++.|...+|+.++.++..+..++++ +++|++.+.-..++..+++
T Consensus 46 ~~a~~~~~~~~~~~~Y~~~~G~~~lr~~~~~~l~~~~g~~~~~~~~i~~t~G~~~~l~~~~~ 107 (389)
T PRK05957 46 IEALNNFLANPENHKYQAVQGIPPLLEAITQKLQQDNGIELNNEQAIVVTAGSNMAFMNAIL 107 (389)
T ss_pred HHHHHHHHhCCCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCeEEEeCChHHHHHHHHH
Confidence 455556666566678999999999999999999888889888 7899999998888876654
No 63
>COG0436 Aspartate/tyrosine/aromatic aminotransferase [Amino acid transport and metabolism]
Probab=91.63 E-value=0.79 Score=37.51 Aligned_cols=61 Identities=18% Similarity=0.137 Sum_probs=50.4
Q ss_pred HHHHHHHHhhhCCCCCCCCCCcchhHHHHHHHHHHhhccccCCCCC-eeeccchhhhhhhhhc
Q 040208 44 FLACLASALKEHSFFPYEPPAGTKRFQNLIADFMKMYHHIPLNADC-QSLQPKVINIDEEAAG 105 (117)
Q Consensus 44 FLA~Las~Lk~~s~fP~EpPaGs~~FRnLIagFmk~YHhIPl~~dn-VvvfPSR~~~~e~a~~ 105 (117)
...-+...+++... .|-|+.|...+|..||.+++....+.++|++ |+|.+--..++=.|++
T Consensus 46 i~~a~~~a~~~~~~-~Y~~~~G~~~LReaia~~~~~~~~~~~~~~~eiivt~Ga~~al~~~~~ 107 (393)
T COG0436 46 IIEAAIEALEEGGT-HYTPSAGIPELREAIAEKYKRRYGLDVDPEEEIIVTAGAKEALFLAFL 107 (393)
T ss_pred HHHHHHHHHhcccC-CCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCeEEEeCCHHHHHHHHHH
Confidence 45556666777654 6669999999999999999999999999998 9999988777777664
No 64
>TIGR03542 DAPAT_plant LL-diaminopimelate aminotransferase. This clade of the pfam00155 superfamily of aminotransferases includes several which are adjacent to elements of the lysine biosynthesis via diaminopimelate pathway (GenProp0125). This clade includes characterized species in plants and Chlamydia. Every member of this clade is from a genome which possesses most of the lysine biosynthesis pathway but lacks any of the known succinylases, desuccinylases, acetylases or deacetylases typical of the acylated versions of this pathway nor do they have the direct, NADPH-dependent enzyme (ddh).
Probab=91.59 E-value=0.57 Score=36.84 Aligned_cols=58 Identities=14% Similarity=0.093 Sum_probs=43.6
Q ss_pred HHHHHHHhhhC----CCCCCCCCCcchhHHHHHHHHHHhhccccCCCCCeeeccchhhhhhhhhc
Q 040208 45 LACLASALKEH----SFFPYEPPAGTKRFQNLIADFMKMYHHIPLNADCQSLQPKVINIDEEAAG 105 (117)
Q Consensus 45 LA~Las~Lk~~----s~fP~EpPaGs~~FRnLIagFmk~YHhIPl~~dnVvvfPSR~~~~e~a~~ 105 (117)
...+.+.+++. ...=|.|+.|...+|+.||.++...+ +++|||++-+.-..++.....
T Consensus 52 ~~~~~~~~~~~~~~~~~~~Y~p~~g~~~lr~aia~~~~~~~---~~~d~I~it~Ga~~al~~l~~ 113 (402)
T TIGR03542 52 IEAFHNAVDELASEETFRGYGPEQGYPFLREAIAENDYRGR---IDPEEIFISDGAKCDVFRLQS 113 (402)
T ss_pred HHHHHHHHhcccccccccCCCCCCCCHHHHHHHHHHHHhcC---CCHHHEEECCCcHHHHHHHHH
Confidence 45566666653 23447789999999999999863322 899999999999988876544
No 65
>PRK03967 histidinol-phosphate aminotransferase; Provisional
Probab=90.69 E-value=0.86 Score=35.12 Aligned_cols=55 Identities=18% Similarity=0.220 Sum_probs=40.3
Q ss_pred HHHHHHHHhhhCCCCCCCCCCcchhHHHHHHHHHHhhccccCCCCCeeeccchhhhhhhhhc
Q 040208 44 FLACLASALKEHSFFPYEPPAGTKRFQNLIADFMKMYHHIPLNADCQSLQPKVINIDEEAAG 105 (117)
Q Consensus 44 FLA~Las~Lk~~s~fP~EpPaGs~~FRnLIagFmk~YHhIPl~~dnVvvfPSR~~~~e~a~~ 105 (117)
.++.+.+.+.+....=| |+.|...+|..||.++. ++++||++-+.-..++..++.
T Consensus 36 ~~~~~~~~~~~~~~~~Y-~~~g~~~lr~~ia~~~~------~~~~~I~~t~G~~~~l~~~~~ 90 (337)
T PRK03967 36 LKEEIFEELKRVPFNRY-PHITSDPLREAIAEFYG------LDAENIAVGNGSDELISYLVK 90 (337)
T ss_pred HHHHHHHHhhcCccccC-CCCCHHHHHHHHHHHhC------cCcceEEEcCCHHHHHHHHHH
Confidence 45566666654333334 35699999999999874 789999999998888876655
No 66
>PF00155 Aminotran_1_2: Aminotransferase class I and II 1-aminocyclopropane-1-carboxylate synthase signature aspartate aminotransferase signature; InterPro: IPR004839 Aminotransferases share certain mechanistic features with other pyridoxal-phosphate dependent enzymes, such as the covalent binding of the pyridoxal-phosphate group to a lysine residue. On the basis of sequence similarity, these various enzymes can be grouped [] into class I and class II. This entry includes proteins from both subfamilies.; GO: 0016769 transferase activity, transferring nitrogenous groups, 0030170 pyridoxal phosphate binding, 0009058 biosynthetic process; PDB: 3NRA_B 3P6K_B 3OP7_A 3ASB_A 3ASA_A 1W7M_A 3FVX_A 1W7N_A 3FVU_B 3FVS_A ....
Probab=89.97 E-value=0.49 Score=35.49 Aligned_cols=57 Identities=21% Similarity=0.262 Sum_probs=48.3
Q ss_pred HhhhCCCCCCCCCCcchhHHHHHHHHHHhhccccCCCC-CeeeccchhhhhhhhhcCC
Q 040208 51 ALKEHSFFPYEPPAGTKRFQNLIADFMKMYHHIPLNAD-CQSLQPKVINIDEEAAGNS 107 (117)
Q Consensus 51 ~Lk~~s~fP~EpPaGs~~FRnLIagFmk~YHhIPl~~d-nVvvfPSR~~~~e~a~~~~ 107 (117)
.....+.+-|.||.|...+|..||.||..-+-++++++ +|++-+.-..++..+....
T Consensus 31 ~~~~~~~~~Y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~~i~~~~G~~~~~~~~~~~~ 88 (363)
T PF00155_consen 31 AATSSSFLGYPPPQGYPELREAIADFLGRRYGVPVDPEANILVTSGAQAALFLLLRLL 88 (363)
T ss_dssp HHHHTGCTSSTCTTHHHHHHHHHHHHHHHHHTHHTTGGEGEEEESHHHHHHHHHHHHH
T ss_pred hhcccccccCCCchhhHHHHHHHHHHhhhccCcccccceEEEEecccccchhhhhhcc
Confidence 34568899999999999999999999998889999999 9999988777766655443
No 67
>cd00609 AAT_like Aspartate aminotransferase family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). Pyridoxal phosphate combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the substrate in four kinds of reactions (1) transamination (movement of amino groups), (2) racemization (redistribution of enantiomers), (3) decarboxylation (removing COOH groups), and (4) various side-chain reactions depending on the enzyme involved. Pyridoxal phosphate (PLP) dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalyzed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary hi
Probab=89.97 E-value=2 Score=31.04 Aligned_cols=54 Identities=9% Similarity=0.108 Sum_probs=46.1
Q ss_pred hhCCCCCCCCCCcchhHHHHHHHHHHhhccccCCCCCeeeccchhhhhhhhhcC
Q 040208 53 KEHSFFPYEPPAGTKRFQNLIADFMKMYHHIPLNADCQSLQPKVINIDEEAAGN 106 (117)
Q Consensus 53 k~~s~fP~EpPaGs~~FRnLIagFmk~YHhIPl~~dnVvvfPSR~~~~e~a~~~ 106 (117)
.+....-|.++.|...+|..++.++..-|.++-.++++++.++-..++..++..
T Consensus 25 ~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~t~a~~~~~~~ 78 (350)
T cd00609 25 LRAGLLGYYPDPGLPELREAIAEWLGRRGGVDVPPEEIVVTNGAQEALSLLLRA 78 (350)
T ss_pred hccCCCCCCCCCCcHHHHHHHHHHHHHHhCCCCCcceEEEecCcHHHHHHHHHH
Confidence 344566789999999999999999999888899999999999998888776654
No 68
>PRK07324 transaminase; Validated
Probab=87.87 E-value=1.2 Score=34.86 Aligned_cols=53 Identities=9% Similarity=0.104 Sum_probs=40.6
Q ss_pred HHHHHhhhCCCCCCCCCCcchhHHHHHHHHHHhhccccCCCCCeeeccchhhhhhhhhc
Q 040208 47 CLASALKEHSFFPYEPPAGTKRFQNLIADFMKMYHHIPLNADCQSLQPKVINIDEEAAG 105 (117)
Q Consensus 47 ~Las~Lk~~s~fP~EpPaGs~~FRnLIagFmk~YHhIPl~~dnVvvfPSR~~~~e~a~~ 105 (117)
.+-..+++.. .-|.++.|...+|..||.++.. ++|++|++.+.-..++.-+++
T Consensus 46 ~~~~~~~~~~-~~Y~~~~G~~~lr~~ia~~~~~-----~~~~~vi~t~G~~~al~~~~~ 98 (373)
T PRK07324 46 AFYQELGQKK-LTYGWIEGSPEFKEAVASLYQN-----VKPENILQTNGATGANFLVLY 98 (373)
T ss_pred HHHHHHhcCC-ccCCCCCCCHHHHHHHHHHhcC-----CChhhEEEcCChHHHHHHHHH
Confidence 3345565544 4788999999999999998642 689999999988777776654
No 69
>PRK14808 histidinol-phosphate aminotransferase; Provisional
Probab=87.69 E-value=1.2 Score=34.53 Aligned_cols=74 Identities=11% Similarity=0.053 Sum_probs=47.9
Q ss_pred ccccccccccccccccch--HHHHHHHHhhhCCCCCCCCCCcchhHHHHHHHHHHhhccccCCCCCeeeccchhhhhhhh
Q 040208 26 SSLDLYFEDDLVADEKIP--FLACLASALKEHSFFPYEPPAGTKRFQNLIADFMKMYHHIPLNADCQSLQPKVINIDEEA 103 (117)
Q Consensus 26 sSLDLsFeddsVAdEKIp--FLA~Las~Lk~~s~fP~EpPaGs~~FRnLIagFmk~YHhIPl~~dnVvvfPSR~~~~e~a 103 (117)
..++|+..+.. ...| .+..+...++...+.-| |+.|...+|+.||.+++..+ ++++||+|-+.-..++..+
T Consensus 20 ~~i~l~~~~~~---~~~p~~~~~~~~~~~~~~~~~~Y-~~~~~~~Lr~aia~~~~~~~---~~~~~i~it~Ga~~~i~~~ 92 (335)
T PRK14808 20 DRTYLALNENP---FPFPEDLVDEVFRRLNSDTLRIY-YDSPDEELIEKILSYLDTDF---LSKNNVSVGNGADEIIYVM 92 (335)
T ss_pred ceeEecCCCCC---CCCCHHHHHHHHHHhhhhhhhcC-CCCChHHHHHHHHHHhCCCC---CCcceEEEcCCHHHHHHHH
Confidence 34666665432 2222 24444555544322223 33499999999999998754 6899999999988888777
Q ss_pred hcC
Q 040208 104 AGN 106 (117)
Q Consensus 104 ~~~ 106 (117)
++.
T Consensus 93 ~~~ 95 (335)
T PRK14808 93 MLM 95 (335)
T ss_pred HHH
Confidence 653
No 70
>PRK14809 histidinol-phosphate aminotransferase; Provisional
Probab=85.73 E-value=2.3 Score=32.67 Aligned_cols=70 Identities=11% Similarity=0.045 Sum_probs=46.6
Q ss_pred cccccccccccccccchHHHHHHHHhhhCCCCCCCCCCcchhHHHHHHHHHHhhccccCCCCCeeeccchhhhhhhhhcC
Q 040208 27 SLDLYFEDDLVADEKIPFLACLASALKEHSFFPYEPPAGTKRFQNLIADFMKMYHHIPLNADCQSLQPKVINIDEEAAGN 106 (117)
Q Consensus 27 SLDLsFeddsVAdEKIpFLA~Las~Lk~~s~fP~EpPaGs~~FRnLIagFmk~YHhIPl~~dnVvvfPSR~~~~e~a~~~ 106 (117)
-+||+--+....-.. ..++.+.+.+++...|| +.|...+|..||.+. .++|+||+|-+.-..++..+++.
T Consensus 32 ~i~l~~~~~~~~~~~-~~~~~~~~~~~~~~~Y~---~~~~~~lr~~ia~~~------~~~~~~I~it~G~~~al~~~~~~ 101 (357)
T PRK14809 32 LVKLSSNENPHGPSP-AAVEAIREAAERVHSYP---KASHADLTAALADRW------DVSPEQVWLANGGDGALDYLARA 101 (357)
T ss_pred eeEecCCCCCCCCCH-HHHHHHHHHHhhhhcCC---CCCHHHHHHHHHHHh------CCCcceEEECCCHHHHHHHHHHH
Confidence 456665433221111 12455666666544444 468999999999975 58999999999998888877654
No 71
>PRK14807 histidinol-phosphate aminotransferase; Provisional
Probab=85.61 E-value=1.6 Score=33.66 Aligned_cols=92 Identities=9% Similarity=0.098 Sum_probs=55.3
Q ss_pred CccccccchHHHHHHHHhhcchhccccccccccccccccccc--hHHHHHHHHhhhCCCCCCCCCCcchhHHHHHHHHHH
Q 040208 1 MISTFISGQVKKIFEFLKNGFYEISSSLDLYFEDDLVADEKI--PFLACLASALKEHSFFPYEPPAGTKRFQNLIADFMK 78 (117)
Q Consensus 1 ~~~~~~PnqVk~if~FLknGF~e~ssSLDLsFeddsVAdEKI--pFLA~Las~Lk~~s~fP~EpPaGs~~FRnLIagFmk 78 (117)
||-..+.+.+.++-.++.+. ...-+||+.-+-. -.. ..+..+...++..+...|.+ .+...+|..||.++
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~---~~~p~~~~~a~~~~~~~~~~~~y~~-~~~~~lr~~ia~~~- 72 (351)
T PRK14807 1 MIENLVREEIKGFKNYEVHS---IPYKYKMDANETP---FELPEEVIKNIQEIVKSSQVNIYPD-PTAEKLREELARYC- 72 (351)
T ss_pred ChhhHHHHHHhhcCCCCCCC---CCceeEccCCCCC---CCCCHHHHHHHHHHhhcCcccCCCC-ccHHHHHHHHHHHh-
Confidence 45555566666666664331 1123455543331 111 13444555666555555644 45789999999874
Q ss_pred hhccccCCCCCeeeccchhhhhhhhhc
Q 040208 79 MYHHIPLNADCQSLQPKVINIDEEAAG 105 (117)
Q Consensus 79 ~YHhIPl~~dnVvvfPSR~~~~e~a~~ 105 (117)
.+++++|+|.+.-..++..+++
T Consensus 73 -----~~~~~~i~it~G~~~~l~~~~~ 94 (351)
T PRK14807 73 -----SVVPTNIFVGNGSDEIIHLIML 94 (351)
T ss_pred -----CCCcccEEEecCHHHHHHHHHH
Confidence 4789999999988887776654
No 72
>PRK07908 hypothetical protein; Provisional
Probab=84.87 E-value=2.6 Score=32.20 Aligned_cols=73 Identities=15% Similarity=-0.023 Sum_probs=50.1
Q ss_pred ccccccccccccccccchHHHHHHHHhhhCCCCCCCCCCcchhHHHHHHHHHHhhccccCCCCCeeeccchhhhhhhhhc
Q 040208 26 SSLDLYFEDDLVADEKIPFLACLASALKEHSFFPYEPPAGTKRFQNLIADFMKMYHHIPLNADCQSLQPKVINIDEEAAG 105 (117)
Q Consensus 26 sSLDLsFeddsVAdEKIpFLA~Las~Lk~~s~fP~EpPaGs~~FRnLIagFmk~YHhIPl~~dnVvvfPSR~~~~e~a~~ 105 (117)
..+||+..+...- ---..+..+...+.+... |.+|.|...+|+.||.++ .++|++|++-+.-..++.-+++
T Consensus 23 ~~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~--Y~~~~g~~~lr~aia~~~------~~~~~~I~it~Ga~~al~~~~~ 93 (349)
T PRK07908 23 GLLDFAVNVRHDT-PPEWLRERLAARLGDLAA--YPSTEDERRARAAVAARH------GRTPDEVLLLAGAAEGFALLAR 93 (349)
T ss_pred CeEEecCCCCCCC-CCHHHHHHHHHHhhHhhc--CCCccchHHHHHHHHHHh------CcChhhEEECCCHHHHHHHHHh
Confidence 4677777553210 011135666666655333 566789999999999975 2589999999999999888777
Q ss_pred CC
Q 040208 106 NS 107 (117)
Q Consensus 106 ~~ 107 (117)
..
T Consensus 94 l~ 95 (349)
T PRK07908 94 LR 95 (349)
T ss_pred cC
Confidence 43
No 73
>COG1167 ARO8 Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs [Transcription / Amino acid transport and metabolism]
Probab=84.82 E-value=3 Score=34.66 Aligned_cols=78 Identities=17% Similarity=0.201 Sum_probs=59.5
Q ss_pred cccccccccccccchHH---HHHHHHhh---hCCCCCCCCCCcchhHHHHHHHHHHhhccccCCCCCeeeccchhhhhhh
Q 040208 29 DLYFEDDLVADEKIPFL---ACLASALK---EHSFFPYEPPAGTKRFQNLIADFMKMYHHIPLNADCQSLQPKVINIDEE 102 (117)
Q Consensus 29 DLsFeddsVAdEKIpFL---A~Las~Lk---~~s~fP~EpPaGs~~FRnLIagFmk~YHhIPl~~dnVvvfPSR~~~~e~ 102 (117)
-++|.-.+.+.+..|.- .+++..+. ......|.++.|...-|..|+.+|+.-++|+.+|++|+|.-.-..+++-
T Consensus 91 ~i~f~~g~p~~~~fp~~~~~~~~~~~~~~~~~~~~~~y~~~~G~~~LR~~ia~~l~~~~g~~~~~~~IiiT~G~q~al~l 170 (459)
T COG1167 91 VIDFAGGLPDPSLFPLEALRRALARVLRNYGASLALQYGPTAGLPELREAIAAYLLARRGISCEPEQIVITSGAQQALDL 170 (459)
T ss_pred eecCCCCCCCcccCCHHHHHHHHHHHHhhcchhhhhcCCCCCCcHHHHHHHHHHHHHhcCCccCcCeEEEeCCHHHHHHH
Confidence 34555555666666643 34455553 3336899999999999999999999999999999999999888888776
Q ss_pred hhcC
Q 040208 103 AAGN 106 (117)
Q Consensus 103 a~~~ 106 (117)
.++.
T Consensus 171 ~~~~ 174 (459)
T COG1167 171 LLRL 174 (459)
T ss_pred HHHH
Confidence 6554
No 74
>PLN02397 aspartate transaminase
Probab=84.44 E-value=2.4 Score=34.21 Aligned_cols=39 Identities=18% Similarity=0.155 Sum_probs=31.3
Q ss_pred hhhCCCCCCCCCCcchhHHHHHHHHHHhhccccCCCCCe
Q 040208 52 LKEHSFFPYEPPAGTKRFQNLIADFMKMYHHIPLNADCQ 90 (117)
Q Consensus 52 Lk~~s~fP~EpPaGs~~FRnLIagFmk~YHhIPl~~dnV 90 (117)
+......-|.|+.|...+|..|+.+++..+..++.+++|
T Consensus 79 ~~~~~~~~Y~~~~G~~~LR~aia~~~~~~~~~~~~~~~i 117 (423)
T PLN02397 79 LAGSRNKEYLPIEGLAEFNKLSAKLAYGADSPAIKENRV 117 (423)
T ss_pred hccCCCCCCCCcCCCHHHHHHHHHHHcCCCCchhhcCee
Confidence 455555689999999999999999997777667777665
No 75
>PRK01533 histidinol-phosphate aminotransferase; Validated
Probab=83.66 E-value=3.2 Score=32.78 Aligned_cols=70 Identities=13% Similarity=0.209 Sum_probs=47.0
Q ss_pred ccccccccccccc-cccchHHHHHHHHhhhCCCCCCCCCCcchhHHHHHHHHHHhhccccCCCCCeeeccchhhhhhhhh
Q 040208 26 SSLDLYFEDDLVA-DEKIPFLACLASALKEHSFFPYEPPAGTKRFQNLIADFMKMYHHIPLNADCQSLQPKVINIDEEAA 104 (117)
Q Consensus 26 sSLDLsFeddsVA-dEKIpFLA~Las~Lk~~s~fP~EpPaGs~~FRnLIagFmk~YHhIPl~~dnVvvfPSR~~~~e~a~ 104 (117)
.-+||+.-+.... .++ .+..+.+.+.+..+| |+.|...+|..||.++ .++++||+|-+.-..++..++
T Consensus 30 ~~i~l~~nen~~~~~~~--v~~a~~~~~~~~~~Y---p~~g~~~Lr~aia~~~------~~~~~~I~vt~Gs~e~i~~~~ 98 (366)
T PRK01533 30 SFVKLASNENPFGCSPR--VLDELQKSWLDHALY---PDGGATTLRQTIANKL------HVKMEQVLCGSGLDEVIQIIS 98 (366)
T ss_pred ceEEeCCCCCCCCCCHH--HHHHHHHHHHhcCcC---CCCCHHHHHHHHHHHh------CCCcceEEECCCHHHHHHHHH
Confidence 3466666544321 111 244455555555554 5679999999999986 267999999999988888776
Q ss_pred cC
Q 040208 105 GN 106 (117)
Q Consensus 105 ~~ 106 (117)
+.
T Consensus 99 ~~ 100 (366)
T PRK01533 99 RA 100 (366)
T ss_pred HH
Confidence 54
No 76
>PRK03321 putative aminotransferase; Provisional
Probab=82.72 E-value=3.2 Score=31.59 Aligned_cols=69 Identities=10% Similarity=0.164 Sum_probs=44.3
Q ss_pred cccccccccccccccchHHHHHHHHhhhCCCCCCCCCCcchhHHHHHHHHHHhhccccCCCCCeeeccchhhhhhhhhc
Q 040208 27 SLDLYFEDDLVADEKIPFLACLASALKEHSFFPYEPPAGTKRFQNLIADFMKMYHHIPLNADCQSLQPKVINIDEEAAG 105 (117)
Q Consensus 27 SLDLsFeddsVAdEKIpFLA~Las~Lk~~s~fP~EpPaGs~~FRnLIagFmk~YHhIPl~~dnVvvfPSR~~~~e~a~~ 105 (117)
-+||+..+-+.---+ ..+..+.+.+.....|| +.|...+|+.||.++. .++++|++.+.-..++..+++
T Consensus 24 ~i~l~~~~~~~~~~~-~~~~a~~~~~~~~~~y~---~~g~~~lr~~ia~~~~------~~~~~I~~~~G~~~~l~~~~~ 92 (352)
T PRK03321 24 AIKLSSNETPFGPLP-SVRAAIARAAAGVNRYP---DMGAVELRAALAEHLG------VPPEHVAVGCGSVALCQQLVQ 92 (352)
T ss_pred ceeccCCCCCCCCCH-HHHHHHHHHHHhcCcCC---CCcHHHHHHHHHHHhC------cCHHHEEECCCHHHHHHHHHH
Confidence 456665544321111 25555666665544444 5699999999999875 678999998777666665543
No 77
>PRK08637 hypothetical protein; Provisional
Probab=81.42 E-value=4.7 Score=31.59 Aligned_cols=67 Identities=18% Similarity=0.267 Sum_probs=47.4
Q ss_pred ccchHHHHHHHHhhh---CCCCCCCCCCcchhHHHHHHHHHHh-hcccc-CCCCCeeeccchhhhhhhhhcC
Q 040208 40 EKIPFLACLASALKE---HSFFPYEPPAGTKRFQNLIADFMKM-YHHIP-LNADCQSLQPKVINIDEEAAGN 106 (117)
Q Consensus 40 EKIpFLA~Las~Lk~---~s~fP~EpPaGs~~FRnLIagFmk~-YHhIP-l~~dnVvvfPSR~~~~e~a~~~ 106 (117)
++-..+.++...+++ ...+.|.||.|...+|..|+.++.. +.++. -+.+||+|-+.-..++..++..
T Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~lr~~ia~~~~~~~~~~~~~~~~~I~it~G~~~al~~~~~~ 88 (388)
T PRK08637 17 GGPMYLSSLQDLLNDLTPDEIFPYAPPQGIPELRDLWQEKMLRENPSLSGKKMSLPIVTNALTHGLSLVADL 88 (388)
T ss_pred CCcchHHHHHHHHHhhccccccCCCCCCCCHHHHHHHHHHHhccCccccccccceeeEccchHHHHHHHHHH
Confidence 344566666666664 4678999999999999999988744 32322 1236789999888888766544
No 78
>TIGR01141 hisC histidinol-phosphate aminotransferase. Histidinol-phosphate aminotransferase is a pyridoxal-phosphate dependent enzyme.
Probab=79.68 E-value=3.8 Score=30.87 Aligned_cols=53 Identities=15% Similarity=0.146 Sum_probs=38.1
Q ss_pred HHHHHHHHhhhCCCCCCCCCCcchhHHHHHHHHHHhhccccCCCCCeeeccchhhhhhhhhc
Q 040208 44 FLACLASALKEHSFFPYEPPAGTKRFQNLIADFMKMYHHIPLNADCQSLQPKVINIDEEAAG 105 (117)
Q Consensus 44 FLA~Las~Lk~~s~fP~EpPaGs~~FRnLIagFmk~YHhIPl~~dnVvvfPSR~~~~e~a~~ 105 (117)
.++-+...+.+. .-|.+|.| ..+|..||.++. .++++|++.++...+++.++.
T Consensus 37 ~~~a~~~~~~~~--~~y~~~~~-~~lr~~ia~~~~------~~~~~i~~~~G~~~~l~~~~~ 89 (346)
T TIGR01141 37 AKEALRAEADKL--HRYPDPDP-AELKQALADYYG------VDPEQILLGNGSDEIIELLIR 89 (346)
T ss_pred HHHHHHHhHHHh--hcCCCCCH-HHHHHHHHHHhC------cChHHEEEcCCHHHHHHHHHH
Confidence 345555555433 33456666 899999999986 678999999998888876654
No 79
>PRK07392 threonine-phosphate decarboxylase; Validated
Probab=77.48 E-value=5.9 Score=30.53 Aligned_cols=49 Identities=16% Similarity=0.143 Sum_probs=35.4
Q ss_pred HHHHhhhCCCCCCCCCCcchhHHHHHHHHHHhhccccCCCCCeeeccchhhhhhhhhc
Q 040208 48 LASALKEHSFFPYEPPAGTKRFQNLIADFMKMYHHIPLNADCQSLQPKVINIDEEAAG 105 (117)
Q Consensus 48 Las~Lk~~s~fP~EpPaGs~~FRnLIagFmk~YHhIPl~~dnVvvfPSR~~~~e~a~~ 105 (117)
+...+..... |.+| |...+|..||.++ .+++++|+|.+.-..++.-+++
T Consensus 44 ~~~~~~~~~~--Y~~~-~~~~Lr~aia~~~------~v~~~~I~it~G~~~~i~~~~~ 92 (360)
T PRK07392 44 IQSALSALRH--YPDP-DYRELRLALAQHH------QLPPEWILPGNGAAELLTWAGR 92 (360)
T ss_pred HHHHHHHhhc--CCCc-CHHHHHHHHHHHh------CcChhhEEECCCHHHHHHHHHH
Confidence 4444443333 3344 5679999999987 4689999999998888887765
No 80
>PRK05387 histidinol-phosphate aminotransferase; Provisional
Probab=76.43 E-value=4.5 Score=30.59 Aligned_cols=70 Identities=14% Similarity=0.177 Sum_probs=44.0
Q ss_pred cccccccccccccccchHHHHHHHHhhhCCCCCCCCCCcchhHHHHHHHHHHhhccccCCCCCeeeccchhhhhhhhhc
Q 040208 27 SLDLYFEDDLVADEKIPFLACLASALKEHSFFPYEPPAGTKRFQNLIADFMKMYHHIPLNADCQSLQPKVINIDEEAAG 105 (117)
Q Consensus 27 SLDLsFeddsVAdEKIpFLA~Las~Lk~~s~fP~EpPaGs~~FRnLIagFmk~YHhIPl~~dnVvvfPSR~~~~e~a~~ 105 (117)
-+||+..+....-.. .....+.+.+++. ..-| |+.|...+|..||.|+. +++++|+|.+.-..++..+++
T Consensus 26 ~i~l~~~~~~~~~~~-~~~~a~~~~~~~~-~~~y-~~~~~~~lr~aia~~~~------~~~~~I~it~G~~~al~~~~~ 95 (353)
T PRK05387 26 LIKLNTNENPYPPSP-KVLEAIRAALGDD-LRLY-PDPNADALRQAIAAYYG------LDPEQVFVGNGSDEVLAHAFL 95 (353)
T ss_pred eeeccCCCCCCCCCH-HHHHHHHHHhhhh-hhcC-CCCcHHHHHHHHHHHhC------CCHHHEEEcCCHHHHHHHHHH
Confidence 355655444321100 1344555555431 2334 34477999999999863 689999999999888887755
No 81
>PRK08056 threonine-phosphate decarboxylase; Provisional
Probab=76.38 E-value=6.5 Score=30.36 Aligned_cols=53 Identities=8% Similarity=0.018 Sum_probs=39.2
Q ss_pred HHHHHHHHhhhCCCCCCCCCCcchhHHHHHHHHHHhhccccCCCCCeeeccchhhhhhhhhc
Q 040208 44 FLACLASALKEHSFFPYEPPAGTKRFQNLIADFMKMYHHIPLNADCQSLQPKVINIDEEAAG 105 (117)
Q Consensus 44 FLA~Las~Lk~~s~fP~EpPaGs~~FRnLIagFmk~YHhIPl~~dnVvvfPSR~~~~e~a~~ 105 (117)
.+..+...++....|| +.|...+|..||.++ .++|++|++-+....++..+++
T Consensus 38 ~~~a~~~~~~~~~~y~---~~~~~~lr~~ia~~~------~~~~~~i~it~Ga~~~l~~~~~ 90 (356)
T PRK08056 38 LKRAIIDNLDCAERYP---DVEYRHLHQALARHH------QVPASWILAGNGETESIFAVVS 90 (356)
T ss_pred HHHHHHHHHHhcccCc---CccHHHHHHHHHHHh------CcChhhEEECCCHHHHHHHHHH
Confidence 4566666666555554 347899999999985 3689999999988888776654
No 82
>PRK06358 threonine-phosphate decarboxylase; Provisional
Probab=73.21 E-value=9.6 Score=29.61 Aligned_cols=70 Identities=13% Similarity=0.094 Sum_probs=46.0
Q ss_pred cccccccccccccccchHHHHHHHHhhhCCCCCCCCCCcchhHHHHHHHHHHhhccccCCCCCeeeccchhhhhhhhhcC
Q 040208 27 SLDLYFEDDLVADEKIPFLACLASALKEHSFFPYEPPAGTKRFQNLIADFMKMYHHIPLNADCQSLQPKVINIDEEAAGN 106 (117)
Q Consensus 27 SLDLsFeddsVAdEKIpFLA~Las~Lk~~s~fP~EpPaGs~~FRnLIagFmk~YHhIPl~~dnVvvfPSR~~~~e~a~~~ 106 (117)
.+||+.......- =-.+.+.+.+.+.+...|| +.|...+|..||.++ .++++||++-+.-..++-.+++.
T Consensus 21 ~~~l~~~~~~~~~-p~~~~~a~~~~~~~~~~Y~---~~~~~~lr~~ia~~~------~~~~~~i~it~Ga~~~l~~~~~~ 90 (354)
T PRK06358 21 ILDFSANINPLGV-PESLKQAITENLDKLVEYP---DPDYLELRKRIASFE------QLDLENVILGNGATELIFNIVKV 90 (354)
T ss_pred eEEecCCCCCCCC-CHHHHHHHHHHHHhhhcCC---CccHHHHHHHHHHHh------CCChhhEEECCCHHHHHHHHHHH
Confidence 4677664332211 0114455555555555544 347889999999986 37999999999988888777664
No 83
>PRK05166 histidinol-phosphate aminotransferase; Provisional
Probab=70.16 E-value=8.6 Score=29.86 Aligned_cols=69 Identities=14% Similarity=0.085 Sum_probs=43.0
Q ss_pred ccccccccccc-ccccchHHHHHHHHhhhCCCCCCCCCCcchhHHHHHHHHHHhhccccCCCCCeeeccchhhhhhhhhc
Q 040208 27 SLDLYFEDDLV-ADEKIPFLACLASALKEHSFFPYEPPAGTKRFQNLIADFMKMYHHIPLNADCQSLQPKVINIDEEAAG 105 (117)
Q Consensus 27 SLDLsFeddsV-AdEKIpFLA~Las~Lk~~s~fP~EpPaGs~~FRnLIagFmk~YHhIPl~~dnVvvfPSR~~~~e~a~~ 105 (117)
-+||+..+... ..+ .....|.+..+. .+-|.+|.|. .+|+.||.++ + ++++||++-+.-..++.-+++
T Consensus 38 ~i~l~~~~~~~~~~~--~~~~al~~~~~~--~~~Y~~~~g~-~lr~~ia~~~----~--~~~~~i~~t~G~~~~l~~~~~ 106 (371)
T PRK05166 38 IAKLGSNENPLGPSP--AVRRAFADIAEL--LRLYPDPQGR-ALREAIAART----G--VPADRIILGNGSEDLIAVICR 106 (371)
T ss_pred eEEcCCCCCCCCCCH--HHHHHHHHHHHH--hhcCCCCcHH-HHHHHHHHHh----C--cCHHHEEEcCCHHHHHHHHHH
Confidence 35666554332 111 123344443333 3346688895 9999999875 2 478999999988888776654
Q ss_pred C
Q 040208 106 N 106 (117)
Q Consensus 106 ~ 106 (117)
.
T Consensus 107 ~ 107 (371)
T PRK05166 107 A 107 (371)
T ss_pred H
Confidence 3
No 84
>PRK09105 putative aminotransferase; Provisional
Probab=70.04 E-value=10 Score=29.87 Aligned_cols=71 Identities=11% Similarity=-0.065 Sum_probs=46.3
Q ss_pred cccccccccccccc-cccchHHHHHHHHhhhCCCCCCCCCCcchhHHHHHHHHHHhhccccCCCCCeeeccchhhhhhhh
Q 040208 25 SSSLDLYFEDDLVA-DEKIPFLACLASALKEHSFFPYEPPAGTKRFQNLIADFMKMYHHIPLNADCQSLQPKVINIDEEA 103 (117)
Q Consensus 25 ssSLDLsFeddsVA-dEKIpFLA~Las~Lk~~s~fP~EpPaGs~~FRnLIagFmk~YHhIPl~~dnVvvfPSR~~~~e~a 103 (117)
...++|+..+.... .+ ..++.+.+.+.+...|| |.+...+|..|+.+ ++ ++|+||+|-+.-..++..+
T Consensus 43 ~~~i~l~~~~~~~~~~~--~~~~a~~~~~~~~~~Y~---~~~~~~Lr~aia~~----~~--v~~e~I~it~Gs~~ai~~~ 111 (370)
T PRK09105 43 EGAVFLNANECPLGPSP--AARDAAARSAALSGRYD---LELEDDLRTLFAAQ----EG--LPADHVMAYAGSSEPLNYA 111 (370)
T ss_pred CCcEEecCCCCCCCCCH--HHHHHHHHHHHHhcCCC---CchHHHHHHHHHHH----hC--cChhhEEEcCChHHHHHHH
Confidence 34466665553221 11 24555666665544444 33588999999874 45 5899999999999998887
Q ss_pred hcC
Q 040208 104 AGN 106 (117)
Q Consensus 104 ~~~ 106 (117)
++.
T Consensus 112 ~~~ 114 (370)
T PRK09105 112 VLA 114 (370)
T ss_pred HHH
Confidence 753
No 85
>PRK08153 histidinol-phosphate aminotransferase; Provisional
Probab=69.91 E-value=9.5 Score=29.80 Aligned_cols=53 Identities=11% Similarity=0.137 Sum_probs=38.0
Q ss_pred HHHHHHHhhhCCCCCCCCCCcchhHHHHHHHHHHhhccccCCCCCeeeccchhhhhhhhhcC
Q 040208 45 LACLASALKEHSFFPYEPPAGTKRFQNLIADFMKMYHHIPLNADCQSLQPKVINIDEEAAGN 106 (117)
Q Consensus 45 LA~Las~Lk~~s~fP~EpPaGs~~FRnLIagFmk~YHhIPl~~dnVvvfPSR~~~~e~a~~~ 106 (117)
+..++..+.+. ..|.+| +...+|..||.++ .++|+||++.+.-..++..++..
T Consensus 51 ~~a~~~~~~~~--~~Y~~~-~~~~Lr~~ia~~~------~~~~~~I~it~G~~~~l~~~~~~ 103 (369)
T PRK08153 51 IAAMREAAAEI--WKYGDP-ENHDLRHALAAHH------GVAPENIMVGEGIDGLLGLIVRL 103 (369)
T ss_pred HHHHHHHHHHh--hcCCCC-ccHHHHHHHHHHh------CCCHHHEEEcCCHHHHHHHHHHH
Confidence 44555555432 335455 5889999999875 36899999999988888877653
No 86
>COG1168 MalY Bifunctional PLP-dependent enzyme with beta-cystathionase and maltose regulon repressor activities [Amino acid transport and metabolism]
Probab=69.01 E-value=14 Score=32.43 Aligned_cols=71 Identities=25% Similarity=0.313 Sum_probs=61.2
Q ss_pred cccccccchHHHHHHHHhhh---CCCCCCCCCCcchhHHHHHHHHHHhhccccCCCCCeeeccchhhhhhhhhcCC
Q 040208 35 DLVADEKIPFLACLASALKE---HSFFPYEPPAGTKRFQNLIADFMKMYHHIPLNADCQSLQPKVINIDEEAAGNS 107 (117)
Q Consensus 35 dsVAdEKIpFLA~Las~Lk~---~s~fP~EpPaGs~~FRnLIagFmk~YHhIPl~~dnVvvfPSR~~~~e~a~~~~ 107 (117)
-||||--+|-.-.+..+|++ +..|-|. -++..|-+-|++|++.=|+--+.++-|+.-|...-.+..+.+.-
T Consensus 30 mWVADMDf~~pp~i~~Al~~rvdhGvfGY~--~~~~~~~~ai~~w~~~r~~~~i~~e~i~~~p~VVpgi~~~I~~~ 103 (388)
T COG1168 30 MWVADMDFPTPPEIIEALRERVDHGVFGYP--YGSDELYAAIAHWFKQRHQWEIKPEWIVFVPGVVPGISLAIRAL 103 (388)
T ss_pred eeeecccCCCCHHHHHHHHHHHhcCCCCCC--CCCHHHHHHHHHHHHHhcCCCCCcceEEEcCcchHhHHHHHHHh
Confidence 48999998888888888874 5666664 88999999999999999999999999999999999988887643
No 87
>cd06450 DOPA_deC_like DOPA decarboxylase family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to DOPA/tyrosine decarboxylase (DDC), histidine decarboxylase (HDC), and glutamate decarboxylase (GDC). DDC is active as a dimer and catalyzes the decarboxylation of tyrosine. GDC catalyzes the decarboxylation of glutamate and HDC catalyzes the decarboxylation of histidine.
Probab=68.83 E-value=24 Score=26.34 Aligned_cols=63 Identities=8% Similarity=0.101 Sum_probs=50.7
Q ss_pred hHHHHHHHHhhhCCCCCCCCCCcchhHHHHHHHHHHhhccccCCCCCeeeccchhhhhhhhhc
Q 040208 43 PFLACLASALKEHSFFPYEPPAGTKRFQNLIADFMKMYHHIPLNADCQSLQPKVINIDEEAAG 105 (117)
Q Consensus 43 pFLA~Las~Lk~~s~fP~EpPaGs~~FRnLIagFmk~YHhIPl~~dnVvvfPSR~~~~e~a~~ 105 (117)
..++.+...+.+....+|+.-.|+..++.-++.++....+.|..++++++.++-..++--|+.
T Consensus 13 ~~~~~~~~~~~n~~~~~y~~~~~~~~le~~~~~~~~~~~g~~~~~~~~~~t~ggt~a~~~al~ 75 (345)
T cd06450 13 ALLLEMLTSAKNAIDFTWDESPAATEMEAEVVNWLAKLFGLPSEDADGVFTSGGSESNLLALL 75 (345)
T ss_pred HHHHHHHHHhcCCCCcccccCchhHHHHHHHHHHHHHHhCCCCCCCCEEEeCChhHHHHHHHH
Confidence 456666777778777889988899999999999998888888666788888888777765553
No 88
>PRK04870 histidinol-phosphate aminotransferase; Provisional
Probab=65.47 E-value=23 Score=27.13 Aligned_cols=56 Identities=16% Similarity=0.083 Sum_probs=39.1
Q ss_pred HHHHHHHHhhhCCCCCCCCCCcchhHHHHHHHHHHhhccccCCCCCeeeccchhhhhhhhhc
Q 040208 44 FLACLASALKEHSFFPYEPPAGTKRFQNLIADFMKMYHHIPLNADCQSLQPKVINIDEEAAG 105 (117)
Q Consensus 44 FLA~Las~Lk~~s~fP~EpPaGs~~FRnLIagFmk~YHhIPl~~dnVvvfPSR~~~~e~a~~ 105 (117)
.+..+...++.....-|.+ .|...+|..||.++. ++ ..++|++-+.-..++..+++
T Consensus 44 ~~~~~~~~~~~~~~~~Y~~-~~~~~lr~~ia~~~~----~~-~~~~I~~t~G~~~~i~~~~~ 99 (356)
T PRK04870 44 LRAELGERLAEVALNRYPD-PRAAALKAALRAAMG----VP-AGADVLLGNGSDELIQLLAL 99 (356)
T ss_pred HHHHHHHHhhccccccCCC-CCHHHHHHHHHHHhC----cC-CCCcEEEcCCHHHHHHHHHH
Confidence 3566777777655555544 588999999998774 33 23588888887777777665
No 89
>PRK03158 histidinol-phosphate aminotransferase; Provisional
Probab=60.50 E-value=9.6 Score=29.08 Aligned_cols=51 Identities=10% Similarity=0.158 Sum_probs=37.7
Q ss_pred HHHHHHhhhCCCCCCCCCCcchhHHHHHHHHHHhhccccCCCCCeeeccchhhhhhhhhc
Q 040208 46 ACLASALKEHSFFPYEPPAGTKRFQNLIADFMKMYHHIPLNADCQSLQPKVINIDEEAAG 105 (117)
Q Consensus 46 A~Las~Lk~~s~fP~EpPaGs~~FRnLIagFmk~YHhIPl~~dnVvvfPSR~~~~e~a~~ 105 (117)
.-+...++...+ .|+.|...+|..||.++. +++++|++-+....++..+++
T Consensus 49 ~a~~~~~~~~~~---~p~~g~~~lr~~ia~~~~------~~~~~i~~t~G~~~~l~~~~~ 99 (359)
T PRK03158 49 EAIAAHLDELAL---YPDGYAPELRTKVAKHLG------VDEEQLLFGAGLDEVIQMISR 99 (359)
T ss_pred HHHHHHHHHhhc---CCCCcHHHHHHHHHHHhC------CCHHHEEECCCHHHHHHHHHH
Confidence 334445554444 456799999999999872 578999999998888876654
No 90
>PRK15481 transcriptional regulatory protein PtsJ; Provisional
Probab=60.19 E-value=27 Score=27.86 Aligned_cols=45 Identities=16% Similarity=0.086 Sum_probs=36.6
Q ss_pred CCCCCCcchhHHHHHHHHHHhhccccCCCCCeeeccchhhhhhhhhcC
Q 040208 59 PYEPPAGTKRFQNLIADFMKMYHHIPLNADCQSLQPKVINIDEEAAGN 106 (117)
Q Consensus 59 P~EpPaGs~~FRnLIagFmk~YHhIPl~~dnVvvfPSR~~~~e~a~~~ 106 (117)
-|-+|.|...+|..|+.+++... . .++||+|-+.-..++..+++.
T Consensus 116 ~Y~~~~g~~~lr~~ia~~~~~~~--~-~~~~Iiit~G~~~al~~~~~~ 160 (431)
T PRK15481 116 LYGDAPVSPELHAWAARWLRDDC--P-VAFEIDLTSGAIDAIERLLCA 160 (431)
T ss_pred hcCCcCCCHHHHHHHHHHHhhcc--C-CcCeEEEecCcHHHHHHHHHH
Confidence 47789999999999999987642 2 457999999988888888763
No 91
>PF11230 DUF3029: Protein of unknown function (DUF3029); InterPro: IPR016905 Members of this family are homologs to enzymes known to undergo activation by a radical SAM protein to create an active site glycyl radical. This family appears to be activated by the YjjW radical SAM protein, usually encoded by an adjacent gene.
Probab=55.21 E-value=12 Score=33.80 Aligned_cols=37 Identities=30% Similarity=0.483 Sum_probs=31.1
Q ss_pred HHHHHhhhCCCCCCCCCCcchhHHHHHHHHHHhhccccC
Q 040208 47 CLASALKEHSFFPYEPPAGTKRFQNLIADFMKMYHHIPL 85 (117)
Q Consensus 47 ~Las~Lk~~s~fP~EpPaGs~~FRnLIagFmk~YHhIPl 85 (117)
--+.+||+.|-|---+|+ ++|...+.+.+=.|||+|=
T Consensus 55 DY~kfl~qGs~fLeL~pp--~DldeAln~L~IlY~HVPS 91 (487)
T PF11230_consen 55 DYAKFLKQGSEFLELEPP--KDLDEALNNLLILYHHVPS 91 (487)
T ss_pred cHHHHHhccchhcccCCc--ccHHHHHHhhhHHhhcCCc
Confidence 347889999988776776 5789999999999999994
No 92
>PRK09275 aspartate aminotransferase; Provisional
Probab=53.85 E-value=62 Score=28.42 Aligned_cols=59 Identities=10% Similarity=-0.023 Sum_probs=41.5
Q ss_pred HHHHHHHHhhhCCCCCCCCCCcchhHHHHHHH-HHHhhcc---ccCCCCCeeeccchhhhhhhhhc
Q 040208 44 FLACLASALKEHSFFPYEPPAGTKRFQNLIAD-FMKMYHH---IPLNADCQSLQPKVINIDEEAAG 105 (117)
Q Consensus 44 FLA~Las~Lk~~s~fP~EpPaGs~~FRnLIag-Fmk~YHh---IPl~~dnVvvfPSR~~~~e~a~~ 105 (117)
++--++..+.+. . |-+|.|...+|.-|+. +.+.++. .|..++||+|-+.-..++..+++
T Consensus 117 ~v~e~~~~~~~~--~-Y~~~~g~~~lreaia~~~~~~~~~~~~~~~~~~~I~vT~Ga~~al~~~~~ 179 (527)
T PRK09275 117 FVYELVDGIIGD--N-YPVPDRMLKHTEKIVKDYLRQEMCGGRPPKGEFDLFAVEGGTAAMCYIFD 179 (527)
T ss_pred HHHHHHHHHhcC--C-CCCCCCCHHHHHHHHHHHHHhhccCCCCCCCcCeEEEeCCHHHHHHHHHH
Confidence 333355555443 2 7799999999999998 6554332 33335699999999988887765
No 93
>PRK01151 rps17E 30S ribosomal protein S17e; Validated
Probab=51.59 E-value=9.6 Score=25.35 Aligned_cols=51 Identities=20% Similarity=0.273 Sum_probs=30.6
Q ss_pred ccchHHHHHHHHhhcchhccccccccccccccccccchHHHHHHHHhhhCCCCCCCCCCcchhHHHHHHHHHH
Q 040208 6 ISGQVKKIFEFLKNGFYEISSSLDLYFEDDLVADEKIPFLACLASALKEHSFFPYEPPAGTKRFQNLIADFMK 78 (117)
Q Consensus 6 ~PnqVk~if~FLknGF~e~ssSLDLsFeddsVAdEKIpFLA~Las~Lk~~s~fP~EpPaGs~~FRnLIagFmk 78 (117)
-|.-||.+-.-|-..|.+. +...|+..--. +..+| ..-|++-||-||||.-
T Consensus 4 r~k~IKr~a~~lieky~~~---ft~DFe~NK~~------v~e~a-------------~i~SK~lRNrIAGYiT 54 (58)
T PRK01151 4 RPKYIKRTAEELLEKYPDL---FTTDFETNKKL------VEELT-------------NIESKKVRNRIAGYIT 54 (58)
T ss_pred chHHHHHHHHHHHHHhHHH---hcccHHHHHHH------HHHHh-------------cCccHhHHHHHhhhhh
Confidence 3566777777776666543 34455554321 12222 2348999999999963
No 94
>PLN03026 histidinol-phosphate aminotransferase; Provisional
Probab=49.20 E-value=31 Score=27.29 Aligned_cols=38 Identities=11% Similarity=0.098 Sum_probs=30.2
Q ss_pred CCCcchhHHHHHHHHHHhhccccCCCCCeeeccchhhhhhhhhc
Q 040208 62 PPAGTKRFQNLIADFMKMYHHIPLNADCQSLQPKVINIDEEAAG 105 (117)
Q Consensus 62 pPaGs~~FRnLIagFmk~YHhIPl~~dnVvvfPSR~~~~e~a~~ 105 (117)
|+.|...+|..||.++. ++++||++-+.-..++..+++
T Consensus 84 p~~~~~~lr~~ia~~~~------~~~~~I~~t~Ga~~~i~~~~~ 121 (380)
T PLN03026 84 PDPESRRLRAALAEDSG------LESENILVGCGADELIDLLMR 121 (380)
T ss_pred CCCCHHHHHHHHHHHhC------cChhhEEEcCCHHHHHHHHHH
Confidence 34578999999998753 579999998888888877764
No 95
>PF15387 DUF4611: Domain of unknown function (DUF4611)
Probab=47.32 E-value=14 Score=27.10 Aligned_cols=26 Identities=27% Similarity=0.466 Sum_probs=21.7
Q ss_pred CCCCCCCCcchhHHHHHHHHHHhhcc
Q 040208 57 FFPYEPPAGTKRFQNLIADFMKMYHH 82 (117)
Q Consensus 57 ~fP~EpPaGs~~FRnLIagFmk~YHh 82 (117)
.-|||-|..+.+|+.||.|--++---
T Consensus 16 rv~ce~p~~~d~~q~LlsGvaqm~e~ 41 (96)
T PF15387_consen 16 RVPCEAPGDADPFQGLLSGVAQMREL 41 (96)
T ss_pred EEeeecCCCcccHHHHHHHHHHHHHH
Confidence 45899999999999999998665433
No 96
>TIGR01825 gly_Cac_T_rel pyridoxal phosphate-dependent acyltransferase, putative. This model represents an enzyme subfamily related to three known enzymes; it appears closest to glycine C-acteyltransferase, shows no overlap with it in species distribution, and may share that function. The three closely related enzymes are glycine C-acetyltransferase (2-amino-3-ketobutyrate coenzyme A ligase), 5-aminolevulinic acid synthase, and 8-amino-7-oxononanoate synthase. All transfer the R-group (acetyl, succinyl, or 6-carboxyhexanoyl) from coenzyme A to an amino acid (Gly, Gly, Ala, respectively), with release of CO2 for the latter two reactions.
Probab=45.47 E-value=93 Score=23.75 Aligned_cols=57 Identities=12% Similarity=0.124 Sum_probs=41.5
Q ss_pred HHHHHHHhhhC--CCCCCCCCCcchhHHHHHHHHHHhhccccCCCCCeeeccchhhhhhhhhc
Q 040208 45 LACLASALKEH--SFFPYEPPAGTKRFQNLIADFMKMYHHIPLNADCQSLQPKVINIDEEAAG 105 (117)
Q Consensus 45 LA~Las~Lk~~--s~fP~EpPaGs~~FRnLIagFmk~YHhIPl~~dnVvvfPSR~~~~e~a~~ 105 (117)
...+...++.. ....|.++.|....|..++..|+.+.+- + +.+++.|-..+.+.|+.
T Consensus 53 ~~a~~~~~~~~~~~~~~~~~~~g~~~l~~~l~~~l~~~~g~---~-~~i~~~sG~~a~~~a~~ 111 (385)
T TIGR01825 53 KEAAAQAIQQYGVGAGAVRTIAGTLRLHEELEEKLAKFKKT---E-AALVFQSGFNTNQGVLS 111 (385)
T ss_pred HHHHHHHHHHcCCCCCccCcccCCcHHHHHHHHHHHHHhCC---C-cEEEECcHHHHHHHHHH
Confidence 35566666643 3567889999999999999999988773 3 45666666777776655
No 97
>PF15158 DUF4579: Domain of unknown function (DUF4579)
Probab=44.04 E-value=17 Score=29.21 Aligned_cols=19 Identities=37% Similarity=0.690 Sum_probs=16.6
Q ss_pred HHHHHHhhhCCCCCCCCCC
Q 040208 46 ACLASALKEHSFFPYEPPA 64 (117)
Q Consensus 46 A~Las~Lk~~s~fP~EpPa 64 (117)
+.||..||+||+||++-..
T Consensus 7 ~~l~~RL~~N~fyPF~~~~ 25 (186)
T PF15158_consen 7 RHLARRLKNNSFYPFTQQQ 25 (186)
T ss_pred HHHHHHhhcCCCCCceecC
Confidence 5799999999999998663
No 98
>PF15610 PRTase_3: PRTase ComF-like
Probab=43.75 E-value=19 Score=30.15 Aligned_cols=49 Identities=22% Similarity=0.421 Sum_probs=36.1
Q ss_pred cchHHHHHHHHhhhCCCCCCCCCCcchhH-HHHHHHHHHhhccccCCCCCeeeccc
Q 040208 41 KIPFLACLASALKEHSFFPYEPPAGTKRF-QNLIADFMKMYHHIPLNADCQSLQPK 95 (117)
Q Consensus 41 KIpFLA~Las~Lk~~s~fP~EpPaGs~~F-RnLIagFmk~YHhIPl~~dnVvvfPS 95 (117)
|-||.+. +-|.|-|--.+=-..| |.|+.||.+.|=-.=++.|+||++||
T Consensus 16 ~~~F~~~------dYSrfKfGd~~~A~~fg~~La~~fi~~~~~~~~~~d~iV~~~S 65 (274)
T PF15610_consen 16 KFPFSPA------DYSRFKFGDDRVAEQFGRELADGFIAQFSNALLTHDQIVMMPS 65 (274)
T ss_pred CCCCCHH------HhheeecCCHHHHHHHHHHHHHHHHHhhHhhhccCceEEEecC
Confidence 7777764 3455555444433444 67899999998888899999999999
No 99
>PRK04781 histidinol-phosphate aminotransferase; Provisional
Probab=42.55 E-value=25 Score=27.48 Aligned_cols=43 Identities=7% Similarity=0.050 Sum_probs=32.5
Q ss_pred CCCCCCCCCCcchhHHHHHHHHHHhhccccCCCCCeeeccchhhhhhhhhcC
Q 040208 55 HSFFPYEPPAGTKRFQNLIADFMKMYHHIPLNADCQSLQPKVINIDEEAAGN 106 (117)
Q Consensus 55 ~s~fP~EpPaGs~~FRnLIagFmk~YHhIPl~~dnVvvfPSR~~~~e~a~~~ 106 (117)
.+.|| .| +...+|..||.|+. ++++||++-+.-..++..+++.
T Consensus 53 ~~~Y~--~~-~~~~lr~~ia~~~~------~~~~~I~~t~G~~~~l~~~~~~ 95 (364)
T PRK04781 53 TRRYP--DP-QPPGLRSALAALYG------CAPEQLLIGRGSDEAIDLLVRA 95 (364)
T ss_pred hccCC--CC-CHHHHHHHHHHHhC------cChHHEEEeCCHHHHHHHHHHH
Confidence 34454 33 46899999999863 6899999999888888777654
No 100
>PF04273 DUF442: Putative phosphatase (DUF442); InterPro: IPR005939 Although this domain is uncharacterised it seems likely that it performs a phosphatase function.; GO: 0016787 hydrolase activity; PDB: 2F46_A 3GXH_B 3GXG_B.
Probab=42.02 E-value=13 Score=26.12 Aligned_cols=27 Identities=19% Similarity=0.298 Sum_probs=13.5
Q ss_pred hhccccCCCCCeeeccchhhhhhhhhcCC
Q 040208 79 MYHHIPLNADCQSLQPKVINIDEEAAGNS 107 (117)
Q Consensus 79 ~YHhIPl~~dnVvvfPSR~~~~e~a~~~~ 107 (117)
.|||||+..+++ -+..+.+.-+++...
T Consensus 59 ~y~~iPv~~~~~--~~~~v~~f~~~l~~~ 85 (110)
T PF04273_consen 59 QYVHIPVDGGAI--TEEDVEAFADALESL 85 (110)
T ss_dssp EEEE----TTT----HHHHHHHHHHHHTT
T ss_pred eEEEeecCCCCC--CHHHHHHHHHHHHhC
Confidence 588898888873 455555555555543
No 101
>PRK04635 histidinol-phosphate aminotransferase; Provisional
Probab=41.80 E-value=29 Score=26.80 Aligned_cols=37 Identities=5% Similarity=-0.086 Sum_probs=30.4
Q ss_pred CcchhHHHHHHHHHHhhccccCCCCCeeeccchhhhhhhhhcC
Q 040208 64 AGTKRFQNLIADFMKMYHHIPLNADCQSLQPKVINIDEEAAGN 106 (117)
Q Consensus 64 aGs~~FRnLIagFmk~YHhIPl~~dnVvvfPSR~~~~e~a~~~ 106 (117)
.+...+|..||.+. .++++||++-+.-..++..+++.
T Consensus 60 ~~~~~Lr~aia~~~------~~~~~~I~it~Gs~~~i~~~~~~ 96 (354)
T PRK04635 60 CQPPELINAYSAYA------GVAPEQILTSRGADEAIELLIRA 96 (354)
T ss_pred CCHHHHHHHHHHHh------CcCHHHEEEeCCHHHHHHHHHHH
Confidence 46899999999853 46999999999988888877653
No 102
>PHA03111 Ser/Thr kinase; Provisional
Probab=41.80 E-value=13 Score=33.21 Aligned_cols=16 Identities=19% Similarity=0.152 Sum_probs=14.6
Q ss_pred ccccCCCCCeeeccch
Q 040208 81 HHIPLNADCQSLQPKV 96 (117)
Q Consensus 81 HhIPl~~dnVvvfPSR 96 (117)
=|.-|.||||.||||-
T Consensus 305 ~H~DLKPdNILiFds~ 320 (444)
T PHA03111 305 LHVDLKPDNILIFDSD 320 (444)
T ss_pred eeccCCCCcEEEecCC
Confidence 4899999999999994
No 103
>PF05445 Pox_ser-thr_kin: Poxvirus serine/threonine protein kinase; InterPro: IPR008790 This family of proteins contain poxvirus serine/threonine protein kinases, which are essential for phosphorylation of virion proteins during virion assembly. ; GO: 0004672 protein kinase activity, 0005524 ATP binding
Probab=41.12 E-value=14 Score=33.04 Aligned_cols=17 Identities=18% Similarity=0.114 Sum_probs=15.0
Q ss_pred ccccCCCCCeeeccchh
Q 040208 81 HHIPLNADCQSLQPKVI 97 (117)
Q Consensus 81 HhIPl~~dnVvvfPSR~ 97 (117)
=|.-|.||||.||||-.
T Consensus 301 ~H~DLKPdNILiFds~~ 317 (434)
T PF05445_consen 301 LHVDLKPDNILIFDSKE 317 (434)
T ss_pred eecccCcCcEEEecCCC
Confidence 48999999999999943
No 104
>PRK00950 histidinol-phosphate aminotransferase; Validated
Probab=39.55 E-value=73 Score=24.16 Aligned_cols=37 Identities=3% Similarity=0.115 Sum_probs=25.9
Q ss_pred CCCcchhHHHHHHHHHHhhccccCCCCCeeec-cchhhhhhhhhc
Q 040208 62 PPAGTKRFQNLIADFMKMYHHIPLNADCQSLQ-PKVINIDEEAAG 105 (117)
Q Consensus 62 pPaGs~~FRnLIagFmk~YHhIPl~~dnVvvf-PSR~~~~e~a~~ 105 (117)
+|.| ..+|..||.++ .+++++|++. +.-..++..+++
T Consensus 68 ~~~~-~~lr~~ia~~~------~~~~~~i~~~~~Ga~~~i~~~~~ 105 (361)
T PRK00950 68 EPDA-PELREALSKYT------GVPVENIIVGGDGMDEVIDTLMR 105 (361)
T ss_pred CCCH-HHHHHHHHHHh------CCCHHHEEEeCCCHHHHHHHHHH
Confidence 3444 89999999986 3578999884 444556666554
No 105
>TIGR03801 asp_4_decarbox aspartate 4-decarboxylase. This enzyme, aspartate 4-decarboxylase (EC 4.1.1.12), removes the side-chain carboxylate from L-aspartate, converting it to L-alanine plus carbon dioxide. It is a PLP-dependent enzyme, homologous to aspartate aminotransferase (EC 2.6.1.1).
Probab=39.53 E-value=1.4e+02 Score=26.31 Aligned_cols=60 Identities=8% Similarity=-0.098 Sum_probs=39.0
Q ss_pred hHHHHHHHHhhhCCCCCCCCCCcchhHHHHHH-HHHHhhccccCCCC---Ceeeccchhhhhhhhhc
Q 040208 43 PFLACLASALKEHSFFPYEPPAGTKRFQNLIA-DFMKMYHHIPLNAD---CQSLQPKVINIDEEAAG 105 (117)
Q Consensus 43 pFLA~Las~Lk~~s~fP~EpPaGs~~FRnLIa-gFmk~YHhIPl~~d---nVvvfPSR~~~~e~a~~ 105 (117)
+++.-++..+.+. . |.+|.|....|.-|+ -+++........++ ||++-+....++..+++
T Consensus 110 ~~~~~~~~~~~~~-~--Y~~p~g~~~~~e~iv~~y~~~~~~~~~~~~~~~~V~it~Gat~al~~~~~ 173 (521)
T TIGR03801 110 AFLYEMCDGIIGD-N--YPVPDRMLPHSEKIVHQYLIQEMCGNKPPPGEFDLFAVEGGTAAMCYIFD 173 (521)
T ss_pred HHHHHHHHHhhcC-C--CCCCCCCHHHHHHHHHHHHHhhccCCCCCCCcCeEEEeCCHHHHHHHHHH
Confidence 4455555554333 2 556777777665555 68776654444443 89999999998887654
No 106
>PRK10977 hypothetical protein; Provisional
Probab=39.35 E-value=24 Score=31.11 Aligned_cols=37 Identities=30% Similarity=0.462 Sum_probs=31.5
Q ss_pred HHHHHHhhhCCCC-CCCCCCcchhHHHHHHHHHHhhccccC
Q 040208 46 ACLASALKEHSFF-PYEPPAGTKRFQNLIADFMKMYHHIPL 85 (117)
Q Consensus 46 A~Las~Lk~~s~f-P~EpPaGs~~FRnLIagFmk~YHhIPl 85 (117)
--++.+||+.+-+ |.+|| +.|+..++.++=+|||+|-
T Consensus 68 ~d~~~~l~~G~~~v~~~pp---~tf~EAlq~l~~i~~~v~s 105 (509)
T PRK10977 68 PDYAKFLANGSEFLELEPA---KDLDEALNLLTILYHHVPS 105 (509)
T ss_pred cCHHHHHHHHhhhcccCCC---CCHHHHHHHHHHHHHHhhc
Confidence 3468888888877 88877 5799999999999999998
No 107
>PRK05664 threonine-phosphate decarboxylase; Reviewed
Probab=39.16 E-value=50 Score=25.42 Aligned_cols=40 Identities=3% Similarity=-0.156 Sum_probs=31.0
Q ss_pred CcchhHHHHHHHHHHhhccccCCCCCeeeccchhhhhhhhhcCCCccc
Q 040208 64 AGTKRFQNLIADFMKMYHHIPLNADCQSLQPKVINIDEEAAGNSSGED 111 (117)
Q Consensus 64 aGs~~FRnLIagFmk~YHhIPl~~dnVvvfPSR~~~~e~a~~~~~~~~ 111 (117)
.|...+|..||.++. +|||+|-+.-..++.-++....|..
T Consensus 49 ~~~~~Lr~~ia~~~~--------~~~I~it~Gs~~al~~~~~~~~gd~ 88 (330)
T PRK05664 49 ETDDGLEAAARAYYG--------APQLLPVAGSQAAIQALPRLRAPGR 88 (330)
T ss_pred CChHHHHHHHHHHhC--------CCCEEECcCHHHHHHHHHHccCCCE
Confidence 345799999999863 4899999988888888776655543
No 108
>PRK02731 histidinol-phosphate aminotransferase; Validated
Probab=38.74 E-value=82 Score=24.04 Aligned_cols=69 Identities=13% Similarity=0.101 Sum_probs=41.7
Q ss_pred cccccccccccccccchHHHHHHHHhhhCCCCCCCCCCcchhHHHHHHHHHHhhccccCCCCCeeeccchhhhhhhhhc
Q 040208 27 SLDLYFEDDLVADEKIPFLACLASALKEHSFFPYEPPAGTKRFQNLIADFMKMYHHIPLNADCQSLQPKVINIDEEAAG 105 (117)
Q Consensus 27 SLDLsFeddsVAdEKIpFLA~Las~Lk~~s~fP~EpPaGs~~FRnLIagFmk~YHhIPl~~dnVvvfPSR~~~~e~a~~ 105 (117)
-+||+..+...... -.....+...++....|| ++. ...+|..||.++ + ..+++|++-+.-..++.-+++
T Consensus 34 ~i~l~~~~~~~~~~-~~~~~a~~~~~~~~~~y~--~~~-~~~lr~~ia~~~----~--~~~~~i~~t~G~~~~l~~~~~ 102 (367)
T PRK02731 34 IIKLASNENPLGPS-PKAIEAIRAAADELHRYP--DGS-GFELKAALAEKF----G--VDPERIILGNGSDEILELLAR 102 (367)
T ss_pred eEEecCCCCCCCCC-HHHHHHHHHHHHhhcCCC--CCc-HHHHHHHHHHHh----C--cCHHHEEEcCCHHHHHHHHHH
Confidence 45666554332210 114455666665544444 343 468999999875 3 468999988887777765544
No 109
>TIGR01244 conserved hypothetical protein TIGR01244. No member of this family is characterized. The member from Xylella fastidiosa is a longer protein with an N-terminal region described by this model, followed by a metallo-beta-lactamase family domain and an additional C-terminal region. Members scoring above the trusted cutoff are limited to the proteobacteria.
Probab=35.85 E-value=19 Score=25.28 Aligned_cols=10 Identities=10% Similarity=0.042 Sum_probs=5.3
Q ss_pred HHHHHHHhhc
Q 040208 72 LIADFMKMYH 81 (117)
Q Consensus 72 LIagFmk~YH 81 (117)
.|..|.+.++
T Consensus 74 ~v~~f~~~~~ 83 (135)
T TIGR01244 74 DVETFRAAIG 83 (135)
T ss_pred HHHHHHHHHH
Confidence 3555555555
No 110
>PF00833 Ribosomal_S17e: Ribosomal S17; InterPro: IPR001210 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. A number of eukaryotic and archaebacterial ribosomal proteins can be grouped in this family of ribosomal proteins, S17e. They include, vertebrate, Drosophila and Neurospora crassa (crp-3) S17's as well as yeast S17a (RP51A) and S17b (RP51B) and archaebacterial S17e [, , ].; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 1RQ6_A 2XZM_V 2XZN_V 3IZ6_Q 3IZB_Q 3O30_K 3O2Z_K 3U5G_R 3U5C_R.
Probab=35.48 E-value=24 Score=26.45 Aligned_cols=49 Identities=20% Similarity=0.390 Sum_probs=28.8
Q ss_pred cchHHHHHHHHhhcchhccccccccccccccccccchHHHHHHHHhhhCCCCCCCCCCcchhHHHHHHHHH
Q 040208 7 SGQVKKIFEFLKNGFYEISSSLDLYFEDDLVADEKIPFLACLASALKEHSFFPYEPPAGTKRFQNLIADFM 77 (117)
Q Consensus 7 PnqVk~if~FLknGF~e~ssSLDLsFeddsVAdEKIpFLA~Las~Lk~~s~fP~EpPaGs~~FRnLIagFm 77 (117)
+.-||++-.-|-..|.. .|...|+..- .++++-.. .-|++.||-||||.
T Consensus 6 tk~IKr~a~~lieky~~---~~t~DF~~NK-------------~v~~eva~------i~SKklRNkIAGYv 54 (121)
T PF00833_consen 6 TKTIKRAARELIEKYYD---RFTNDFETNK-------------KVVEEVAI------IPSKKLRNKIAGYV 54 (121)
T ss_dssp -HHHHHHHHHHHTTCTT---TSSSSHHHHH-------------HHHHHCSS------SSSTTHHHHHHHHH
T ss_pred chHHHHHHHHHHHHhhh---HhhhhHHHHH-------------HHHHHHcc------ccchhhHHHHHHHH
Confidence 45677776666666543 3344554432 23333333 23899999999995
No 111
>PLN02672 methionine S-methyltransferase
Probab=33.63 E-value=1.1e+02 Score=29.68 Aligned_cols=56 Identities=9% Similarity=0.062 Sum_probs=40.4
Q ss_pred HHHHHHHhhhCCCCCCCCCCcchhHHHHHHHHHHhhccccCCC-CCeeeccchhhhhhhhhc
Q 040208 45 LACLASALKEHSFFPYEPPAGTKRFQNLIADFMKMYHHIPLNA-DCQSLQPKVINIDEEAAG 105 (117)
Q Consensus 45 LA~Las~Lk~~s~fP~EpPaGs~~FRnLIagFmk~YHhIPl~~-dnVvvfPSR~~~~e~a~~ 105 (117)
.+.+...++...+ ..|...+|.-|+.+++.+|+++.++ ++|++-+.-..++..+++
T Consensus 716 ~eAi~eal~~~~~-----s~g~pdlr~aLa~~la~~~Gv~~d~~e~IIvt~Gs~elL~lll~ 772 (1082)
T PLN02672 716 KASIFESFVRQNI-----SESETDPRPSILQFIKSNYGFPTDSCTEFVYGDTSLALFNKLVL 772 (1082)
T ss_pred HHHHHHHHhhcCC-----CCCChHHHHHHHHHHHHHhCcCCCCCCEEEEeCCHHHHHHHHHH
Confidence 3445555544333 2345568999999999999999976 588888888878776655
No 112
>TIGR03402 FeS_nifS cysteine desulfurase NifS. Members of this protein family are NifS, one of several related families of cysteine desulfurase involved in iron-sulfur (FeS) cluster biosynthesis. NifS is part of the NIF system, usually associated with other nif genes involved in nitrogenase expression and nitrogen fixation. The protein family is given a fairly broad interpretation here. It includes a clade nearly always found in extended nitrogen fixation genomic regions, plus a second clade more closely related to the first than to IscS and also part of NifS-like/NifU-like systems. This model does not extend to a more distantly clade found in the epsilon proteobacteria such as Helicobacter pylori, also named NifS in the literature, built instead in TIGR03403.
Probab=32.59 E-value=1.7e+02 Score=22.48 Aligned_cols=27 Identities=11% Similarity=-0.029 Sum_probs=14.6
Q ss_pred HHhhccccCCCCCeeeccchhhhhhhhhc
Q 040208 77 MKMYHHIPLNADCQSLQPKVINIDEEAAG 105 (117)
Q Consensus 77 mk~YHhIPl~~dnVvvfPSR~~~~e~a~~ 105 (117)
+..+.+. .+++|++.|+-..+++-|+.
T Consensus 51 la~~~g~--~~~~i~~t~~~t~a~~~al~ 77 (379)
T TIGR03402 51 VAKLLGA--EPDEIIFTSGGTESDNTAIK 77 (379)
T ss_pred HHHHhCC--CCCeEEEeCcHHHHHHHHHH
Confidence 3344443 35666666666665555443
No 113
>PF14753 DUF4475: Domain of unknown function (DUF4475)
Probab=31.93 E-value=19 Score=28.93 Aligned_cols=21 Identities=29% Similarity=0.664 Sum_probs=20.1
Q ss_pred CCCCCCCcchhHHHHHHHHHH
Q 040208 58 FPYEPPAGTKRFQNLIADFMK 78 (117)
Q Consensus 58 fP~EpPaGs~~FRnLIagFmk 78 (117)
.||-+-.|-..|++|..|+||
T Consensus 167 ~Pya~mggltgfssL~~g~~r 187 (196)
T PF14753_consen 167 VPYAAMGGLTGFSSLAEGYMR 187 (196)
T ss_pred cccccccCccchhhhhccccc
Confidence 899999999999999999998
No 114
>cd01494 AAT_I Aspartate aminotransferase (AAT) superfamily (fold type I) of pyridoxal phosphate (PLP)-dependent enzymes. PLP combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the substrate in four kinds of reactions (1) transamination (movement of amino groups), (2) racemization (redistribution of enantiomers), (3) decarboxylation (removing COOH groups), and (4) various side-chain reactions depending on the enzyme involved. Pyridoxal phosphate (PLP) dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalyzed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary history of these enzymes. Structure and sequence analysis
Probab=31.91 E-value=70 Score=20.39 Aligned_cols=33 Identities=15% Similarity=0.192 Sum_probs=20.4
Q ss_pred hHHHHHHHHHHhhccccCCCCCeeeccchhhhhhhhhcC
Q 040208 68 RFQNLIADFMKMYHHIPLNADCQSLQPKVINIDEEAAGN 106 (117)
Q Consensus 68 ~FRnLIagFmk~YHhIPl~~dnVvvfPSR~~~~e~a~~~ 106 (117)
++|+.++.++. ..++++++.|+...+++-++..
T Consensus 4 ~~~~~l~~~~~------~~~~~~~~~~~~t~a~~~~~~~ 36 (170)
T cd01494 4 ELEEKLARLLQ------PGNDKAVFVPSGTGANEAALLA 36 (170)
T ss_pred HHHHHHHHHcC------CCCCcEEEeCCcHHHHHHHHHH
Confidence 45666666654 5566777777776666655443
No 115
>PLN02521 galactokinase
Probab=31.06 E-value=31 Score=29.98 Aligned_cols=57 Identities=23% Similarity=0.381 Sum_probs=40.1
Q ss_pred ccccchHHHHHHHHhhhCCCCCCCCCCcchhHHHHHHHHHHhhccccCCCCCeeeccchhhhhh
Q 040208 38 ADEKIPFLACLASALKEHSFFPYEPPAGTKRFQNLIADFMKMYHHIPLNADCQSLQPKVINIDE 101 (117)
Q Consensus 38 AdEKIpFLA~Las~Lk~~s~fP~EpPaGs~~FRnLIagFmk~YHhIPl~~dnVvvfPSR~~~~e 101 (117)
-+++||...-|+....+.+ .+++-..|..+|++.|-+.|-+=| +-++--|-|.+.|=
T Consensus 5 ~~~~~~~~~~~~~~~~~~~----~~~~~~~r~~~l~~~F~~~fg~~p---~~~~~APGRVnLiG 61 (497)
T PLN02521 5 EEEPVPVFSSLEPVYGDGS----LLEEARLRYARLKAAFVEVYGAKP---DLFARSPGRVNLIG 61 (497)
T ss_pred CCCCcceechhHHhcCCcc----hhHHHHHHHHHHHHHHHHHHCCCC---CEEEECCceEEEec
Confidence 3567888888776643222 233446799999999999997755 46667788887663
No 116
>PF02805 Ada_Zn_binding: Metal binding domain of Ada; InterPro: IPR004026 The Escherichia coli Ada protein repairs O6-methylguanine residues and methyl phosphotriesters in DNA by direct transfer of the methyl group to a cysteine residue. This domain contains four conserved cysteines that form a zinc binding site [, ]. One of these cysteines is a methyl group acceptor. The methylated domain can then specifically bind to the ada box on a DNA duplex [].; GO: 0003677 DNA binding, 0008168 methyltransferase activity, 0008270 zinc ion binding, 0006281 DNA repair, 0006355 regulation of transcription, DNA-dependent; PDB: 1WPK_A 1ZGW_A 1EYF_A 1ADN_A 1U8B_A.
Probab=30.46 E-value=36 Score=22.84 Aligned_cols=19 Identities=0% Similarity=-0.071 Sum_probs=15.1
Q ss_pred CCCCCeeeccchhhhhhhh
Q 040208 85 LNADCQSLQPKVINIDEEA 103 (117)
Q Consensus 85 l~~dnVvvfPSR~~~~e~a 103 (117)
-.+.||++|.|+..|++..
T Consensus 38 p~~~nv~ff~s~~eA~~aG 56 (66)
T PF02805_consen 38 PKRENVVFFDSAEEAEAAG 56 (66)
T ss_dssp S-SCCEEEESSHHHHHHTT
T ss_pred CCCceeEeeCCHHHHHHcC
Confidence 3789999999999988653
No 117
>TIGR01140 L_thr_O3P_dcar L-threonine-O-3-phosphate decarboxylase. This family contains pyridoxal phosphate-binding class II aminotransferases (see PFAM:PF00222) closely related to, yet distinct from, histidinol-phosphate aminotransferase (HisC). It is found in cobalamin biosynthesis operons in Salmonella typhimurium and Bacillus halodurans (each of which also has HisC) and has been shown to have L-threonine-O-3-phosphate decarboxylase activity in Salmonella. Although the gene symbol cobD was assigned in Salmonella, cobD in other contexts refers to a different cobalamin biosynthesis enzyme, modeled by pfam03186 and called cbiB in Salmonella.
Probab=30.31 E-value=67 Score=24.63 Aligned_cols=44 Identities=11% Similarity=0.000 Sum_probs=31.9
Q ss_pred CCCCCCCCCcchhHHHHHHHHHHhhccccCCCCCeeeccchhhhhhhhhcC
Q 040208 56 SFFPYEPPAGTKRFQNLIADFMKMYHHIPLNADCQSLQPKVINIDEEAAGN 106 (117)
Q Consensus 56 s~fP~EpPaGs~~FRnLIagFmk~YHhIPl~~dnVvvfPSR~~~~e~a~~~ 106 (117)
.+.-|.+|.| ..+|+.|+.++. ++|++|++-+.-..++.-++..
T Consensus 40 ~~~~y~~~~~-~~lr~~la~~~~------~~~~~i~~t~G~~~~i~~~~~~ 83 (330)
T TIGR01140 40 AWARYPDPEY-DELRAAAAAYYG------LPAASVLPVNGAQEAIYLLPRL 83 (330)
T ss_pred HHhhCCCccH-HHHHHHHHHHhC------CChhhEEECCCHHHHHHHHHHH
Confidence 3444555666 999999999753 5689999988777776665443
No 118
>PF09655 Nitr_red_assoc: Conserved nitrate reductase-associated protein (Nitr_red_assoc); InterPro: IPR013481 Proteins in this entry are found in the Cyanobacteria, and are mostly encoded near nitrate reductase and molybdopterin biosynthesis genes. Molybdopterin guanine dinucleotide is a cofactor for nitrate reductase. These proteins are sometimes annotated as nitrate reductase-associated proteins, though their function is unknown.
Probab=28.61 E-value=49 Score=25.51 Aligned_cols=33 Identities=9% Similarity=0.324 Sum_probs=28.9
Q ss_pred CCCCCCCCCCcchhHHHHHHHHHHhhccccCCC
Q 040208 55 HSFFPYEPPAGTKRFQNLIADFMKMYHHIPLNA 87 (117)
Q Consensus 55 ~s~fP~EpPaGs~~FRnLIagFmk~YHhIPl~~ 87 (117)
.--+||+.|+.-.+||+.+..+++.|...|...
T Consensus 46 Lv~~pc~t~~ei~~yr~~L~~li~~~~~~~~~~ 78 (144)
T PF09655_consen 46 LVDLPCDTPEEIQNYREFLQELIRTHAGGPAKD 78 (144)
T ss_pred HHcCCCCCHHHHHHHHHHHHHHHHHHhCCCccc
Confidence 346899999999999999999999999888543
No 119
>cd00610 OAT_like Acetyl ornithine aminotransferase family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to ornithine aminotransferase, acetylornithine aminotransferase, alanine-glyoxylate aminotransferase, dialkylglycine decarboxylase, 4-aminobutyrate aminotransferase, beta-alanine-pyruvate aminotransferase, adenosylmethionine-8-amino-7-oxononanoate aminotransferase, and glutamate-1-semialdehyde 2,1-aminomutase. All the enzymes belonging to this family act on basic amino acids and their derivatives are involved in transamination or decarboxylation.
Probab=27.76 E-value=2.5e+02 Score=21.63 Aligned_cols=58 Identities=14% Similarity=0.020 Sum_probs=36.0
Q ss_pred HHHHHHHhhhCCCCCCCCCCcchhHHHHHHHHHHhhccccCCCCCeeeccchhhhhhhhhcC
Q 040208 45 LACLASALKEHSFFPYEPPAGTKRFQNLIADFMKMYHHIPLNADCQSLQPKVINIDEEAAGN 106 (117)
Q Consensus 45 LA~Las~Lk~~s~fP~EpPaGs~~FRnLIagFmk~YHhIPl~~dnVvvfPSR~~~~e~a~~~ 106 (117)
++.++..++..+.++... |.......++.-+..+. |..++.|++++|-..+.+.|+..
T Consensus 58 ~~a~~~~~~~~~~~~~~~--~~~~~~~~l~~~l~~~~--~~~~~~v~~~~sgsea~~~al~~ 115 (413)
T cd00610 58 VEALKEQLAKLTHFSLGF--FYNEPAVELAELLLALT--PEGLDKVFFVNSGTEAVEAALKL 115 (413)
T ss_pred HHHHHHHHHhCcCccCcc--cCCHHHHHHHHHHHHhC--CCCCCEEEEcCcHHHHHHHHHHH
Confidence 556667777666665542 23333333333333333 23688999999999999988764
No 120
>PTZ00154 40S ribosomal protein S17; Provisional
Probab=27.34 E-value=36 Score=26.20 Aligned_cols=14 Identities=43% Similarity=0.672 Sum_probs=12.1
Q ss_pred cchhHHHHHHHHHH
Q 040208 65 GTKRFQNLIADFMK 78 (117)
Q Consensus 65 Gs~~FRnLIagFmk 78 (117)
-|++.||-||||.-
T Consensus 42 ~SKrlRNrIAGYIT 55 (134)
T PTZ00154 42 PSKRLRNKIAGFVT 55 (134)
T ss_pred cchhhhhHHHHHHH
Confidence 48999999999963
No 121
>COG0788 PurU Formyltetrahydrofolate hydrolase [Nucleotide transport and metabolism]
Probab=27.24 E-value=28 Score=29.66 Aligned_cols=45 Identities=27% Similarity=0.422 Sum_probs=32.2
Q ss_pred HHHHHHHhhh--CCCCCCCCCC---cchhHHHHHHHHHHhhccccCCCCC
Q 040208 45 LACLASALKE--HSFFPYEPPA---GTKRFQNLIADFMKMYHHIPLNADC 89 (117)
Q Consensus 45 LA~Las~Lk~--~s~fP~EpPa---Gs~~FRnLIagFmk~YHhIPl~~dn 89 (117)
--||...|-. ..--|+|-++ .-..+|.++..|==-|||||.+.+|
T Consensus 101 ~HCL~DLL~r~~~g~L~~eI~~VIsNH~dl~~~v~~~~IPfhhip~~~~~ 150 (287)
T COG0788 101 DHCLGDLLYRWRIGELPAEIVAVISNHDDLRPLVERFDIPFHHIPVTKEN 150 (287)
T ss_pred HHHHHHHHHHHhcCCcCCceEEEEcCCHHHHHHHHHcCCCeeeccCCCCc
Confidence 3466666633 2245666554 2346899999999999999999998
No 122
>cd00613 GDC-P Glycine cleavage system P-protein, alpha- and beta-subunits. This family consists of Glycine cleavage system P-proteins EC:1.4.4.2 from bacterial, mammalian and plant sources. The P protein is part of the glycine decarboxylase multienzyme complex EC:2.1.2.10 (GDC) also annotated as glycine cleavage system or glycine synthase. GDC consists of four proteins P, H, L and T. The reaction catalysed by this protein is: Glycine + lipoylprotein <= S-aminomethyldihydrolipoylprotein + CO2. Alpha-beta-type dimers associate to form an alpha(2)beta(2) tetramer, where the alpha- and beta-subunits are structurally similar and appear to have arisen by gene duplication and subsequent divergence with a loss of one active site. The members of this CD are widely dispersed among all three forms of cellular life.
Probab=26.81 E-value=1.2e+02 Score=23.31 Aligned_cols=46 Identities=20% Similarity=0.281 Sum_probs=34.2
Q ss_pred CCCCCCC--CCcchhHHHHHHHHHHhhccccCCCCCeeeccchhhhhhhh
Q 040208 56 SFFPYEP--PAGTKRFQNLIADFMKMYHHIPLNADCQSLQPKVINIDEEA 103 (117)
Q Consensus 56 s~fP~Ep--PaGs~~FRnLIagFmk~YHhIPl~~dnVvvfPSR~~~~e~a 103 (117)
.|-||.| ..|....|.-++-.++...+.+ +++|+++++-..+.|.+
T Consensus 50 ~~~~~~~~~~~g~~~~~~~~~~~la~~~g~~--~~~v~~~~~g~~~~~~~ 97 (398)
T cd00613 50 AYTPYQPEISQGRLQALFELQTMLCELTGMD--VANASLQDEATAAAEAA 97 (398)
T ss_pred cCCCCChhhhhhHHHHHHHHHHHHHHHHCCC--ccceeccCchHHHHHHH
Confidence 5667777 7899999998988888877654 45888999765544543
No 123
>COG1383 RPS17A Ribosomal protein S17E [Translation, ribosomal structure and biogenesis]
Probab=25.82 E-value=58 Score=22.98 Aligned_cols=18 Identities=22% Similarity=0.414 Sum_probs=14.2
Q ss_pred CCcchhHHHHHHHHHHhh
Q 040208 63 PAGTKRFQNLIADFMKMY 80 (117)
Q Consensus 63 PaGs~~FRnLIagFmk~Y 80 (117)
+.-|++-||-|||+.-.|
T Consensus 40 ~i~SK~lRN~IAGYiT~~ 57 (74)
T COG1383 40 NIQSKKLRNRIAGYITRL 57 (74)
T ss_pred cchhHHHHHHHHHHHHHH
Confidence 346899999999997543
No 124
>COG4922 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=23.08 E-value=58 Score=25.11 Aligned_cols=21 Identities=29% Similarity=0.412 Sum_probs=19.2
Q ss_pred ccccccchHHHHHHHHhhhCC
Q 040208 36 LVADEKIPFLACLASALKEHS 56 (117)
Q Consensus 36 sVAdEKIpFLA~Las~Lk~~s 56 (117)
-|+|.|-+|.+|.+.++|++.
T Consensus 41 ~vpdGk~~fv~fFt~ffk~~P 61 (129)
T COG4922 41 MVPDGKDGFVRFFTEFFKEKP 61 (129)
T ss_pred CCCCchHHHHHHHHHHHHhCc
Confidence 589999999999999999874
No 125
>TIGR02664 nitr_red_assoc conserved hypothetical protein. Most members of this protein family are found in the Cyanobacteria, and these mostly near nitrate reductase genes and molybdopterin biosynthesis genes. We note that molybdopterin guanine dinucleotide is a cofactor for nitrate reductase. This protein is sometimes annotated as nitrate reductase-associated protein. Its function is unknown.
Probab=22.70 E-value=76 Score=24.52 Aligned_cols=34 Identities=9% Similarity=0.204 Sum_probs=29.5
Q ss_pred CCCCCCCCCcchhHHHHHHHHHHhhccccCCCCC
Q 040208 56 SFFPYEPPAGTKRFQNLIADFMKMYHHIPLNADC 89 (117)
Q Consensus 56 s~fP~EpPaGs~~FRnLIagFmk~YHhIPl~~dn 89 (117)
-.+||+.|+--.+||+.+.++.+.++..|...=-
T Consensus 47 v~~pc~t~~e~~~yr~~L~~l~~~~a~~~~~~l~ 80 (145)
T TIGR02664 47 VRLPCDTAEVIDPYREYLRDLLRTHADTPPSDLP 80 (145)
T ss_pred HhCccCCHHHHHHHHHHHHHHHHHHcCCCCcCCC
Confidence 3479999999999999999999999999876533
No 126
>COG3453 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=22.23 E-value=33 Score=26.41 Aligned_cols=11 Identities=36% Similarity=0.770 Sum_probs=8.8
Q ss_pred hhccccCCCCC
Q 040208 79 MYHHIPLNADC 89 (117)
Q Consensus 79 ~YHhIPl~~dn 89 (117)
+|||||++...
T Consensus 60 ~y~~iPV~~~~ 70 (130)
T COG3453 60 TYTHIPVTGGG 70 (130)
T ss_pred ceEEeecCCCC
Confidence 59999988754
No 127
>PF08514 STAG: STAG domain ; InterPro: IPR013721 STAG domain proteins are subunits of cohesin complex - a protein complex required for sister chromatid cohesion in eukaryotes. The STAG domain is present in Schizosaccharomyces pombe (Fission yeast) mitotic cohesin Psc3, and the meiosis specific cohesin Rec11. Many organisms express a meiosis-specific STAG protein, for example, mice and humans have a meiosis specific variant called STAG3, although budding yeast does not have a meiosis specific version [].
Probab=21.60 E-value=1.1e+02 Score=21.67 Aligned_cols=27 Identities=19% Similarity=0.407 Sum_probs=20.7
Q ss_pred hhCCCCCCCCCC-cchhHHHHHHHHHHh
Q 040208 53 KEHSFFPYEPPA-GTKRFQNLIADFMKM 79 (117)
Q Consensus 53 k~~s~fP~EpPa-Gs~~FRnLIagFmk~ 79 (117)
++.+-||.-.+. ..+.||+.+..|+..
T Consensus 1 e~~~~YPli~k~~~~k~Fr~~~~~F~~~ 28 (118)
T PF08514_consen 1 EDSSDYPLISKGKKFKKFRKNFCEFFDQ 28 (118)
T ss_pred CCcccCCCcCCCcccHHHHHHHHHHHHH
Confidence 356778877664 589999999998864
No 128
>PF03637 Mob1_phocein: Mob1/phocein family; InterPro: IPR005301 Mob1 is an essential Saccharomyces cerevisiae (Baker's yeast) protein, identified from a two-hybrid screen, that binds Mps1p, a protein kinase essential for spindle pole body duplication and mitotic checkpoint regulation. Mob1 contains no known structural motifs; however MOB1 is a member of a conserved gene family and shares sequence similarity with a nonessential yeast gene, MOB2. Mob1 is a phosphoprotein in vivo and a substrate for the Mps1p kinase in vitro. Conditional alleles of MOB1 cause a late nuclear division arrest at restrictive temperature []. This family also includes phocein Q9QYW3 from SWISSPROT, a rat protein that by yeast two hybrid interacts with striatin [].; PDB: 2HJN_A 1PI1_A 1R3B_A.
Probab=21.56 E-value=1.7e+02 Score=22.17 Aligned_cols=17 Identities=29% Similarity=0.663 Sum_probs=13.1
Q ss_pred HHHHHHhhhCCCCCCCC
Q 040208 46 ACLASALKEHSFFPYEP 62 (117)
Q Consensus 46 A~Las~Lk~~s~fP~Ep 62 (117)
....+.|.+.+.||-++
T Consensus 90 ~w~~~~l~d~~iFPt~~ 106 (175)
T PF03637_consen 90 DWIQSQLNDEKIFPTKP 106 (175)
T ss_dssp HHHHHHHTSTTTSSSST
T ss_pred HHHHHHccCcccCCCcc
Confidence 34567788999999875
No 129
>PF03202 Lipoprotein_10: Putative mycoplasma lipoprotein, C-terminal region; InterPro: IPR004890 This domain is found along with a central domain (IPR004984 from INTERPRO) in a group of Mycoplasma lipoproteins of unknown function.
Probab=21.46 E-value=1e+02 Score=23.02 Aligned_cols=27 Identities=22% Similarity=0.469 Sum_probs=20.6
Q ss_pred hhCCCCCCCCCCc--chhHHHHHHHHHHh
Q 040208 53 KEHSFFPYEPPAG--TKRFQNLIADFMKM 79 (117)
Q Consensus 53 k~~s~fP~EpPaG--s~~FRnLIagFmk~ 79 (117)
.++++.+||.|++ |-.||+-|..=++.
T Consensus 101 ~~~~~~~~~dPad~~S~~FR~~i~Saf~~ 129 (135)
T PF03202_consen 101 SNNNIVSYEDPADFLSGSFRDSIGSAFNS 129 (135)
T ss_pred ccCCeEEecCCcccccHHHHHHHHHHHHH
Confidence 4567999999998 66899988765543
No 130
>PRK13249 phycoerythrobilin:ferredoxin oxidoreductase; Provisional
Probab=21.41 E-value=79 Score=25.98 Aligned_cols=37 Identities=30% Similarity=0.212 Sum_probs=28.0
Q ss_pred ccccccccccccccccchHHHHHHHHhhhCCCCCCCCCCc
Q 040208 26 SSLDLYFEDDLVADEKIPFLACLASALKEHSFFPYEPPAG 65 (117)
Q Consensus 26 sSLDLsFeddsVAdEKIpFLA~Las~Lk~~s~fP~EpPaG 65 (117)
+|+|--+-.+|-=+ |||.+|-+.|.....-||+.|.|
T Consensus 7 ~~~~~~~~~~w~~~---~fl~~~~~~l~~~~l~p~~ip~~ 43 (257)
T PRK13249 7 SSLDPVSIPGWRWQ---PFLDDAIKALSPFQPEPYPVAED 43 (257)
T ss_pred CCCCCeecccccch---HHHHHHHHHHhhCCCcccCCChh
Confidence 45554333444333 99999999999999999999987
No 131
>cd01493 APPBP1_RUB Ubiquitin activating enzyme (E1) subunit APPBP1. APPBP1 is part of the heterodimeric activating enzyme (E1), specific for the Rub family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin(-like) by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by Rub family of ubiquitin-like proteins (Ublps) activates SCF ubiquitin ligases and is involved in cell cycle control, signaling and embryogenesis. ABPP1 contains part of the adenylation domain.
Probab=21.38 E-value=92 Score=26.71 Aligned_cols=78 Identities=24% Similarity=0.351 Sum_probs=48.9
Q ss_pred Hhhcchhcc---ccccccccccccccccchHHHHHHHHhhhC-----CCCCCCCCCcchhHHHHHHHHHHh---------
Q 040208 17 LKNGFYEIS---SSLDLYFEDDLVADEKIPFLACLASALKEH-----SFFPYEPPAGTKRFQNLIADFMKM--------- 79 (117)
Q Consensus 17 LknGF~e~s---sSLDLsFeddsVAdEKIpFLA~Las~Lk~~-----s~fP~EpPaGs~~FRnLIagFmk~--------- 79 (117)
|.+-|.|+. .+.||.--| ..+-.+|||+.-|..+|+.- ..+|.. -.--+.||.+|...++.
T Consensus 175 L~~P~peL~~~~~~~dl~~ld-~~~h~hvPy~viL~~~l~~w~~~~~g~~p~~-~~ek~~f~~~i~~~~~~~~~eeNf~E 252 (425)
T cd01493 175 LDNPFPELREHADSIDLDDMD-PAEHSHTPYIVILIKYLEKWRSAHNGQLPST-YKEKKEFRDLVRSLMRSNEDEENFEE 252 (425)
T ss_pred cCCCcHHHHHHHHhcCCccCC-hhhcCCCCHHHHHHHHHHHHHHhcCCCCCCC-HHHHHHHHHHHHHhcccCCCccchHH
Confidence 345555555 366776443 45668999999999988762 234432 12346799999988875
Q ss_pred ---hccccCCCCCeeeccchhhh
Q 040208 80 ---YHHIPLNADCQSLQPKVINI 99 (117)
Q Consensus 80 ---YHhIPl~~dnVvvfPSR~~~ 99 (117)
+-+..++|-. .|+....
T Consensus 253 A~~~~~~~~~~~~---i~~~v~~ 272 (425)
T cd01493 253 AIKAVNKALNRTK---IPSSVEE 272 (425)
T ss_pred HHHHHHHhhCCCC---CcHHHHH
Confidence 4555666553 3554443
No 132
>cd06502 TA_like Low-specificity threonine aldolase (TA). This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). TA catalyzes the conversion of L-threonine or L-allo-threonine to glycine and acetaldehyde in a secondary glycine biosynthetic pathway.
Probab=21.26 E-value=1.8e+02 Score=21.49 Aligned_cols=38 Identities=13% Similarity=0.215 Sum_probs=21.7
Q ss_pred CCCCCcchhHHHHHHHHHHhhccccCCCCCeeeccchhhhhhhhhc
Q 040208 60 YEPPAGTKRFQNLIADFMKMYHHIPLNADCQSLQPKVINIDEEAAG 105 (117)
Q Consensus 60 ~EpPaGs~~FRnLIagFmk~YHhIPl~~dnVvvfPSR~~~~e~a~~ 105 (117)
|.|+.+...++..++.++. ++++++.++-..++..+++
T Consensus 28 ~~~~~~~~~l~~~~a~~~g--------~~~~~~~~~gt~a~~~~~~ 65 (338)
T cd06502 28 YGEDPTTAKLEARAAELFG--------KEAALFVPSGTAANQLALA 65 (338)
T ss_pred cCCCHHHHHHHHHHHHHhC--------CCeEEEecCchHHHHHHHH
Confidence 3445555566665555543 4566666766666665554
No 133
>cd05120 APH_ChoK_like Aminoglycoside 3'-phosphotransferase (APH) and Choline Kinase (ChoK) family. The APH/ChoK family is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). The family is composed of APH, ChoK, ethanolamine kinase (ETNK), macrolide 2'-phosphotransferase (MPH2'), an unusual homoserine kinase, and uncharacterized proteins with similarity to the N-terminal domain of acyl-CoA dehydrogenase 10 (ACAD10). The members of this family catalyze the transfer of the gamma-phosphoryl group from ATP (or CTP) to small molecule substrates such as aminoglycosides, macrolides, choline, ethanolamine, and homoserine. Phosphorylation of the antibiotics, aminoglycosides and macrolides, leads to their inactivation and to bacterial antibiotic resistance. Phosphorylation of choline, ethanolamine, and homoserine serves
Probab=20.81 E-value=1.3e+02 Score=18.22 Aligned_cols=29 Identities=14% Similarity=0.362 Sum_probs=21.9
Q ss_pred chhHHHHHHHHHHhhcccc--------CCCCCeeecc
Q 040208 66 TKRFQNLIADFMKMYHHIP--------LNADCQSLQP 94 (117)
Q Consensus 66 s~~FRnLIagFmk~YHhIP--------l~~dnVvvfP 94 (117)
......-++..++..|... +.|+||.+-+
T Consensus 88 ~~~~~~~~~~~l~~lh~~~~~~i~H~Dl~~~Nil~~~ 124 (155)
T cd05120 88 KEDIAEQLAELLAKLHQLPLLVLCHGDLHPGNILVDD 124 (155)
T ss_pred HHHHHHHHHHHHHHHhCCCceEEEecCCCcceEEEEC
Confidence 3455566778888888764 7999999977
No 134
>PRK13248 phycoerythrobilin:ferredoxin oxidoreductase; Provisional
Probab=20.78 E-value=73 Score=26.27 Aligned_cols=25 Identities=20% Similarity=0.291 Sum_probs=22.8
Q ss_pred hHHHHHHHHhhhCCCCCCCCCCcch
Q 040208 43 PFLACLASALKEHSFFPYEPPAGTK 67 (117)
Q Consensus 43 pFLA~Las~Lk~~s~fP~EpPaGs~ 67 (117)
|||.+|-+.|.....-||+.|.|-.
T Consensus 17 ~fl~~l~~~l~~~~~~p~~i~~~f~ 41 (253)
T PRK13248 17 NFLKYLTNNLSKYNCLEKKIPSEYS 41 (253)
T ss_pred HHHHHHHHHHHHcCCceecCcHhhh
Confidence 8999999999999999999998754
No 135
>PLN02875 4-hydroxyphenylpyruvate dioxygenase
Probab=20.60 E-value=40 Score=28.96 Aligned_cols=33 Identities=33% Similarity=0.602 Sum_probs=24.0
Q ss_pred CCC-CCCCcchhHHHHHHHHHHhh-----ccccCCCCCee
Q 040208 58 FPY-EPPAGTKRFQNLIADFMKMY-----HHIPLNADCQS 91 (117)
Q Consensus 58 fP~-EpPaGs~~FRnLIagFmk~Y-----HhIPl~~dnVv 91 (117)
+|- ||..|+.+ ++.|+.|+..| |||-|..||++
T Consensus 236 ipLnEP~~~~~~-~SqI~eFL~~~~G~GIQHIAl~tdDI~ 274 (398)
T PLN02875 236 LPLNEPTFGTKR-KSQIQTYLEHNEGPGLQHLALKSDDIF 274 (398)
T ss_pred EEeccCCCCCCC-cChHHHHHHhcCCCCeeEEEeecCCHH
Confidence 444 44445333 68999999877 89999999864
No 136
>COG1980 Archaeal fructose 1,6-bisphosphatase [Carbohydrate transport and metabolism]
Probab=20.46 E-value=38 Score=29.69 Aligned_cols=21 Identities=29% Similarity=0.494 Sum_probs=18.0
Q ss_pred HHHHHHHHHHhhccccCCCCC
Q 040208 69 FQNLIADFMKMYHHIPLNADC 89 (117)
Q Consensus 69 FRnLIagFmk~YHhIPl~~dn 89 (117)
|--|+.|+||.-|+=||-|-.
T Consensus 257 ~PhlV~GWMRGShnGPlMPv~ 277 (369)
T COG1980 257 FPHLVSGWMRGSHNGPLMPVS 277 (369)
T ss_pred cchhhhhhhcccCCCCccccc
Confidence 567999999999999998743
No 137
>PF01950 FBPase_3: Fructose-1,6-bisphosphatase; InterPro: IPR002803 Fructose-1,6-bisphophatase (FBPase) catalyses the hydrolysis of D-fructose-1,6-bisphosphate (FBP) to D-fructose-6-phopshate (F6P) and orthophosphate, and is a key enzyme in gluconeogenesis []. Three different groups of FBPases have been identified in eukaryotes and bacteria (FBPase I-III) []. None of these groups have been found in archaea so far, though a new group of FBPases (FBPase IV) which also show inositol monophosphatase activity has recently been identified in archaea []. Proteins in this entry are though to represent a new group of FBPases (FBPase V) which are found in thermophilic archaea and a hyperthermophilic bacterium Aquifex aeolicus []. The characterised members of this group show strict substrate specificity for FBP and are suggested to be the true FBPase in these organisms [, ]. A structural study suggests that FBPase V has a novel fold for a sugar phosphatase, forming a four-layer alpha-beta-beta-alpha sandwich, unlike the more usual five-layered alpha-beta-alpha-beta-alpha arrangement []. The arrangement of the catalytic side chains and metal ligands was found to be consistent with the three-metal ion assisted catalysis mechanism proposed for other FBPases.; PDB: 3T2C_A 3T2G_A 3T2F_A 3T2E_A 3T2D_A 3T2B_A 3R1M_A 1UMG_A.
Probab=20.35 E-value=6.3 Score=34.45 Aligned_cols=18 Identities=33% Similarity=0.523 Sum_probs=12.8
Q ss_pred HHHHHHHHHhhccccCCC
Q 040208 70 QNLIADFMKMYHHIPLNA 87 (117)
Q Consensus 70 RnLIagFmk~YHhIPl~~ 87 (117)
--|++|+||.-||-||-|
T Consensus 257 phlV~GwmRGSH~gPLMP 274 (363)
T PF01950_consen 257 PHLVAGWMRGSHNGPLMP 274 (363)
T ss_dssp --EEEETGGG-EEEE-EE
T ss_pred ccccccccccccCCcccc
Confidence 358999999999999865
Done!