Query 040209
Match_columns 388
No_of_seqs 111 out of 146
Neff 3.7
Searched_HMMs 29240
Date Mon Mar 25 09:31:24 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040209.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/040209hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ndz_E Endoglucanase D; cellot 65.6 33 0.0011 28.2 8.6 104 232-352 2-105 (107)
2 3ndz_E Endoglucanase D; cellot 59.5 13 0.00046 30.6 5.1 38 2-42 20-57 (107)
3 2cwr_A Chitinase; chitin-bindi 57.5 18 0.00061 29.7 5.5 37 2-44 26-62 (103)
4 1e5b_A Xylanase D; hydrolase, 54.7 8.5 0.00029 30.7 3.1 34 2-43 20-53 (87)
5 1exg_A EXO-1,4-beta-D-glycanas 49.8 89 0.003 25.5 8.6 95 240-352 14-108 (110)
6 3icg_A Endoglucanase D; cellul 46.0 78 0.0027 31.6 9.2 105 231-354 381-487 (515)
7 1exg_A EXO-1,4-beta-D-glycanas 43.0 31 0.001 28.3 4.7 39 2-43 24-62 (110)
8 3icg_A Endoglucanase D; cellul 30.6 54 0.0018 32.8 5.1 88 2-130 400-487 (515)
9 1fjk_A Cardiac phospholamban; 17.3 71 0.0024 23.6 2.2 13 376-388 39-51 (52)
10 3tnd_B Antitoxin VAPB; PIN dom 15.2 38 0.0013 27.1 0.3 37 100-136 8-49 (81)
No 1
>3ndz_E Endoglucanase D; cellotriose, xylanase, carbohydrate binding D glucanase, hydrolase; HET: CT3; 2.08A {Clostridium cellulovorans} PDB: 3ndy_E*
Probab=65.60 E-value=33 Score=28.25 Aligned_cols=104 Identities=21% Similarity=0.278 Sum_probs=66.3
Q ss_pred ceEEeEEEeeCCCCceEEEEEEEecCCccCcccceEEeecCCCCCceeEEEecceeCCCCCcccceEEEEccchhhHHHh
Q 040209 232 PVRVHWHVKQSYTQYWRVKITITNLNVVQNYSQWNLVALHPNLQSVTQVFSFNYKPLNQYGYINDTGMFWGIEFYNDMLL 311 (388)
Q Consensus 232 pV~IhWHVk~nYk~~WrvkiTi~N~~~~~ny~dW~lvvqhpn~~~~~~vySFN~t~l~~y~~~NdT~m~~Gl~~yN~ll~ 311 (388)
+.++-..|..+...|..+.|||+|=. .....+|.+-+..|.=..+++++.=..+. .-++..+-.. .||--|.
T Consensus 2 gc~v~y~v~~~W~~Gf~~~vtVtN~g-~~~i~gWtv~~~~p~g~~it~~Wna~~s~------sG~~vt~~n~-~wN~~la 73 (107)
T 3ndz_E 2 AVEVTYAITNSWGSGASVNVTIKNNG-TTPINGWTLKWTMPINQTITNMWSASFVA------SGTTLSVTNA-GYNGTIA 73 (107)
T ss_dssp CEEEEEEEEEECSSEEEEEEEEEECS-SSCEESCEEEEECCTTEEEEEEESEEEEE------ETTEEEEEEC-STTCEEC
T ss_pred ccEEEEEEcccCCCCEEEEEEEEeCC-CCcccCcEEEEEcCCCCEEecccceEEEe------cCCEEEEEEC-CcccccC
Confidence 34677788899999999999999976 46788999999999755566655433331 1234455443 2343332
Q ss_pred hcCCCCceeEEEEEeecCCCeeeeccCCCceeeEeeCCccC
Q 040209 312 QAGESGNVQTEMLLHKDSGIFTFREGWGFPRRILFNGDECV 352 (388)
Q Consensus 312 e~g~~G~vQSeilf~K~~~~ft~~~Gw~FP~rVyFNGeeC~ 352 (388)
.. |- -.++-|.-.. .+..+-|....+||..|.
T Consensus 74 ~~---G~-s~~fGf~g~~-----~G~~~~P~~~~lnG~~C~ 105 (107)
T 3ndz_E 74 AN---GG-TQSFGFNINY-----SGVLSKPTGFTVNGTECT 105 (107)
T ss_dssp TT---TE-EEEEEEEEEE-----CSSCCCCSCCEETTEECE
T ss_pred CC---Cc-cEEEEEEEeC-----CCCCCCCcEEEECCCccc
Confidence 11 31 2234332221 234577999999999995
No 2
>3ndz_E Endoglucanase D; cellotriose, xylanase, carbohydrate binding D glucanase, hydrolase; HET: CT3; 2.08A {Clostridium cellulovorans} PDB: 3ndy_E*
Probab=59.48 E-value=13 Score=30.63 Aligned_cols=38 Identities=32% Similarity=0.618 Sum_probs=29.7
Q ss_pred EEEEecCccccccCCCCCeeEEeecCCeeEEEeccceeeee
Q 040209 2 RVSLFNYQLYRHIDQPGWKLNWGWQGDEVIWNMWGAEATEQ 42 (388)
Q Consensus 2 ~VTi~N~q~~r~i~~pgW~L~W~W~~~E~IwsM~GA~~~~q 42 (388)
.|||.|.-- .-|+ ||+|.|++..++-|-++..|..+..
T Consensus 20 ~vtVtN~g~-~~i~--gWtv~~~~p~g~~it~~Wna~~s~s 57 (107)
T 3ndz_E 20 NVTIKNNGT-TPIN--GWTLKWTMPINQTITNMWSASFVAS 57 (107)
T ss_dssp EEEEEECSS-SCEE--SCEEEEECCTTEEEEEEESEEEEEE
T ss_pred EEEEEeCCC-Cccc--CcEEEEEcCCCCEEecccceEEEec
Confidence 578888632 2354 9999999999999999999976653
No 3
>2cwr_A Chitinase; chitin-binding domain, endoglucanase, hyperthermophilic, hydrolase; 1.70A {Pyrococcus furiosus} PDB: 2czn_A
Probab=57.51 E-value=18 Score=29.72 Aligned_cols=37 Identities=16% Similarity=0.246 Sum_probs=30.4
Q ss_pred EEEEecCccccccCCCCCeeEEeecCCeeEEEeccceeeeeCC
Q 040209 2 RVSLFNYQLYRHIDQPGWKLNWGWQGDEVIWNMWGAEATEQGN 44 (388)
Q Consensus 2 ~VTi~N~q~~r~i~~pgW~L~W~W~~~E~IwsM~GA~~~~qgd 44 (388)
.|||.|.- + .||+|.|++..++=|-++..|..+..|.
T Consensus 26 ~vtVtN~g----~--~gWtv~~~~~~g~~it~~Wna~~s~sg~ 62 (103)
T 2cwr_A 26 DVTLNLDG----Q--YDWTVKVKLAPGATVGSFWSANKQEGNG 62 (103)
T ss_dssp EEEEEESS----C--CCCEEEEEECTTCEEEEEESEEEEEETT
T ss_pred EEEEeCCC----C--CcEEEEEECCCCcEEecccceEEecCCC
Confidence 58888873 3 5999999999999999999998776543
No 4
>1e5b_A Xylanase D; hydrolase, xylan binding domain, beta-sheet; NMR {Cellulomonas fimi} SCOP: b.2.2.1 PDB: 1e5c_A 1xbd_A 2xbd_A
Probab=54.74 E-value=8.5 Score=30.70 Aligned_cols=34 Identities=26% Similarity=0.530 Sum_probs=27.6
Q ss_pred EEEEecCccccccCCCCCeeEEeecCCeeEEEeccceeeeeC
Q 040209 2 RVSLFNYQLYRHIDQPGWKLNWGWQGDEVIWNMWGAEATEQG 43 (388)
Q Consensus 2 ~VTi~N~q~~r~i~~pgW~L~W~W~~~E~IwsM~GA~~~~qg 43 (388)
.|||.| + .||+|.|++..++=|-++..|..+..|
T Consensus 20 ~vtVtn------~--~gWtv~~~~~~g~~i~~~Wn~~~s~sg 53 (87)
T 1e5b_A 20 TYSVSG------S--SAWTVNLALNGSQTIQASWNANVTGSG 53 (87)
T ss_dssp EEBCCS------C--SSCCCEEECCTTCCEEEEESBCCEESS
T ss_pred EEEEEc------c--CceEEEEEcCCCCEEeeeeceeEecCC
Confidence 577777 4 599999999999999888888776544
No 5
>1exg_A EXO-1,4-beta-D-glycanase; cellulose binding domain, cellulose degradation; NMR {Cellulomonas fimi} SCOP: b.2.2.1 PDB: 1exh_A
Probab=49.78 E-value=89 Score=25.46 Aligned_cols=95 Identities=16% Similarity=0.255 Sum_probs=60.3
Q ss_pred eeCCCCceEEEEEEEecCCccCcccceEEeecCCCCCceeEEEecceeCCCCCcccceEEEEccchhhHHHhhcCCCCce
Q 040209 240 KQSYTQYWRVKITITNLNVVQNYSQWNLVALHPNLQSVTQVFSFNYKPLNQYGYINDTGMFWGIEFYNDMLLQAGESGNV 319 (388)
Q Consensus 240 k~nYk~~WrvkiTi~N~~~~~ny~dW~lvvqhpn~~~~~~vySFN~t~l~~y~~~NdT~m~~Gl~~yN~ll~e~g~~G~v 319 (388)
..+...+..++|||+|=. .....+|.+-+..|.=..+++ +.|++.-. ..++..+-. ..||--|.- |-
T Consensus 14 ~~~W~~Gf~~~vtVtN~g-~~~i~gWtv~~~~~~g~~i~~--~Wna~~s~----sG~~vt~~n-~~wN~~la~----G~- 80 (110)
T 1exg_A 14 VNQWNTGFTANVTVKNTS-SAPVDGWTLTFSFPSGQQVTQ--AWSSTVTQ----SGSAVTVRN-APWNGSIPA----GG- 80 (110)
T ss_dssp EEESSSEEEEEEEEEECS-SSCEESEEEEEECSSSCEEEE--EESSEEEE----ETTEEEEEE-CSGGGEECS----SE-
T ss_pred eCCCCCCEEEEEEEEeCC-CCcccceEEEEEcCCCcEEec--ccceEEEc----cCCEEEEec-ccccceeCC----Cc-
Confidence 578899999999999966 467889999999987444555 44555221 123555555 345654432 21
Q ss_pred eEEEEEeecCCCeeeeccCCCceeeEeeCCccC
Q 040209 320 QTEMLLHKDSGIFTFREGWGFPRRILFNGDECV 352 (388)
Q Consensus 320 QSeilf~K~~~~ft~~~Gw~FP~rVyFNGeeC~ 352 (388)
..++-|.-.. .+...-|....+||..|.
T Consensus 81 s~~fGf~~~~-----~g~~~~Pt~~~lnG~~C~ 108 (110)
T 1exg_A 81 TAQFGFNGSH-----TGTNAAPTAFSLNGTPCT 108 (110)
T ss_dssp EEEEEEEEEC-----SSSCCCCSCEEETTEEEE
T ss_pred EEEEEEEEeC-----CCCCCCCceEEEcCcccC
Confidence 2345444321 123456899999999994
No 6
>3icg_A Endoglucanase D; cellulase, xylanase, carbohydrate binding DOM glucanase, carbohydrate metabolism, cellulose degradation, glycosidase; HET: BTB; 2.10A {Clostridium cellulovorans}
Probab=46.01 E-value=78 Score=31.60 Aligned_cols=105 Identities=22% Similarity=0.295 Sum_probs=67.8
Q ss_pred CceEEeEEEeeCCCCceEEEEEEEecCCccCcccceEEeecCCCCCceeEEEecceeCCCCCcccceEEEEccchhhHHH
Q 040209 231 CPVRVHWHVKQSYTQYWRVKITITNLNVVQNYSQWNLVALHPNLQSVTQVFSFNYKPLNQYGYINDTGMFWGIEFYNDML 310 (388)
Q Consensus 231 CpV~IhWHVk~nYk~~WrvkiTi~N~~~~~ny~dW~lvvqhpn~~~~~~vySFN~t~l~~y~~~NdT~m~~Gl~~yN~ll 310 (388)
=+.++-.-|.++..+|..+.|||+|=. ......|.+-+..|.-..++++.+=+.+. ..++..+-.. .||--|
T Consensus 381 ~~~~~~~~~~~~W~~g~~~~v~v~n~~-~~~~~~W~~~~~~~~~~~i~~~wn~~~~~------~g~~~~~~~~-~~n~~~ 452 (515)
T 3icg_A 381 SAVEVTYAITNSWGSGASVNVTIKNNG-TTPINGWTLKWTMPINQTITNMWSASFVA------SGTTLSVTNA-GYNGTI 452 (515)
T ss_dssp CCEEEEEEEEEECSSEEEEEEEEEECS-SSCEESCEEEEECCTTEEEEEEESEEEEE------ETTEEEEEEC-STTCEE
T ss_pred CceEEEEEEecCCCCccEEEEEEEeCC-CCCcCCeEEEEEeCCCCEeeccccceEEe------cCCeEEEecC-cccccc
Confidence 345667788999999999999999977 47788999999999755666655433331 1234445443 234322
Q ss_pred hhcCCCCceeEEEEEeecCCCeeee--ccCCCceeeEeeCCccCCC
Q 040209 311 LQAGESGNVQTEMLLHKDSGIFTFR--EGWGFPRRILFNGDECVMP 354 (388)
Q Consensus 311 ~e~g~~G~vQSeilf~K~~~~ft~~--~Gw~FP~rVyFNGeeC~mP 354 (388)
.. .| .-.++ +|+.. +..+=|....+||..|.-.
T Consensus 453 ~~---~g-~s~~~-------gf~~~~~g~~~~p~~~~lng~~c~~~ 487 (515)
T 3icg_A 453 AA---NG-GTQSF-------GFNINYSGVLSKPTGFTVNGTECTVK 487 (515)
T ss_dssp CT---TT-EEEEE-------EEEEEECSSCCCCSCCEETTEECEEC
T ss_pred CC---CC-ceEEE-------EEEEeCCCCCCCCceEEECCcccCCC
Confidence 21 02 11233 33332 3456789999999999763
No 7
>1exg_A EXO-1,4-beta-D-glycanase; cellulose binding domain, cellulose degradation; NMR {Cellulomonas fimi} SCOP: b.2.2.1 PDB: 1exh_A
Probab=43.03 E-value=31 Score=28.27 Aligned_cols=39 Identities=23% Similarity=0.596 Sum_probs=29.9
Q ss_pred EEEEecCccccccCCCCCeeEEeecCCeeEEEeccceeeeeC
Q 040209 2 RVSLFNYQLYRHIDQPGWKLNWGWQGDEVIWNMWGAEATEQG 43 (388)
Q Consensus 2 ~VTi~N~q~~r~i~~pgW~L~W~W~~~E~IwsM~GA~~~~qg 43 (388)
.|||.|.-- .-|+ ||+|.|+...++-|-++..|..+..|
T Consensus 24 ~vtVtN~g~-~~i~--gWtv~~~~~~g~~i~~~Wna~~s~sG 62 (110)
T 1exg_A 24 NVTVKNTSS-APVD--GWTLTFSFPSGQQVTQAWSSTVTQSG 62 (110)
T ss_dssp EEEEEECSS-SCEE--SEEEEEECSSSCEEEEEESSEEEEET
T ss_pred EEEEEeCCC-Cccc--ceEEEEEcCCCcEEecccceEEEccC
Confidence 578888532 2354 99999999999989999999776543
No 8
>3icg_A Endoglucanase D; cellulase, xylanase, carbohydrate binding DOM glucanase, carbohydrate metabolism, cellulose degradation, glycosidase; HET: BTB; 2.10A {Clostridium cellulovorans}
Probab=30.60 E-value=54 Score=32.79 Aligned_cols=88 Identities=25% Similarity=0.415 Sum_probs=55.7
Q ss_pred EEEEecCccccccCCCCCeeEEeecCCeeEEEeccceeeeeCCccccCCCCCCcccCCCCeEEeCCCCCCCCcccccccc
Q 040209 2 RVSLFNYQLYRHIDQPGWKLNWGWQGDEVIWNMWGAEATEQGNCSKFTGGQLPHCCEKSPVIVDLLPGAPYNQQTANCCK 81 (388)
Q Consensus 2 ~VTi~N~q~~r~i~~pgW~L~W~W~~~E~IwsM~GA~~~~qgdCs~~~~~~~ph~C~k~P~IvDL~P~~~~d~qi~nCCr 81 (388)
.|||.|.-- .-|+ ||+|+|++..++-|-+...|..+..|.=. .+.+===
T Consensus 400 ~v~v~n~~~-~~~~--~W~~~~~~~~~~~i~~~wn~~~~~~g~~~----------------------------~~~~~~~ 448 (515)
T 3icg_A 400 NVTIKNNGT-TPIN--GWTLKWTMPINQTITNMWSASFVASGTTL----------------------------SVTNAGY 448 (515)
T ss_dssp EEEEEECSS-SCEE--SCEEEEECCTTEEEEEEESEEEEEETTEE----------------------------EEEECST
T ss_pred EEEEEeCCC-CCcC--CeEEEEEeCCCCEeeccccceEEecCCeE----------------------------EEecCcc
Confidence 588888643 2354 99999999999999999999887643111 1111112
Q ss_pred CCeeccCccCccCCceeEEEEEeecCCCCCcCCCcCeEecCCceecCCC
Q 040209 82 GGVLSSLTQDPSKFVAGFQMNVGGSADYTGFQMPENFTLGIPGYTCGNA 130 (388)
Q Consensus 82 ~G~l~~~~~Dps~s~S~FQm~Vg~~~~~~~~~~P~nf~l~~pgYtCg~p 130 (388)
||+|.+- .+..+|-++....|.+ ..|.+|+|.| -.|...
T Consensus 449 n~~~~~~-----g~s~~~gf~~~~~g~~---~~p~~~~lng--~~c~~~ 487 (515)
T 3icg_A 449 NGTIAAN-----GGTQSFGFNINYSGVL---SKPTGFTVNG--TECTVK 487 (515)
T ss_dssp TCEECTT-----TEEEEEEEEEEECSSC---CCCSCCEETT--EECEEC
T ss_pred ccccCCC-----CceEEEEEEEeCCCCC---CCCceEEECC--cccCCC
Confidence 4555331 2234566665555543 4589999988 678653
No 9
>1fjk_A Cardiac phospholamban; helix, membrane protein; NMR {Sus scrofa} SCOP: j.37.1.1 PDB: 1fjp_A 2kyv_A 1zll_A 2hyn_A 1n7l_A 2kb7_P 1plp_A
Probab=17.28 E-value=71 Score=23.58 Aligned_cols=13 Identities=62% Similarity=0.879 Sum_probs=8.3
Q ss_pred HHHHHHHHHhhhC
Q 040209 376 RIFLPLLLLIVML 388 (388)
Q Consensus 376 ~~~~~~~~~~v~~ 388 (388)
+|.||++..||||
T Consensus 39 licllli~iivml 51 (52)
T 1fjk_A 39 LIFLLLICIIVML 51 (52)
T ss_dssp HHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHh
Confidence 4456666677775
No 10
>3tnd_B Antitoxin VAPB; PIN domain, spovt/ABRB-like domain, ribonuclease, DNA-bindin translation; 2.70A {Shigella flexneri}
Probab=15.22 E-value=38 Score=27.11 Aligned_cols=37 Identities=16% Similarity=0.192 Sum_probs=28.0
Q ss_pred EEEEeecCCCCCcCCCcCeEecCCc-----eecCCCeeeCCC
Q 040209 100 QMNVGGSADYTGFQMPENFTLGIPG-----YTCGNATEVPPS 136 (388)
Q Consensus 100 Qm~Vg~~~~~~~~~~P~nf~l~~pg-----YtCg~p~~V~Pt 136 (388)
.-+|++.|.+-+|++|+.|.+.+.+ ..-|..+++.|.
T Consensus 8 ~~~~f~nG~SQAVRLPke~~f~~~v~eV~I~r~G~~iIL~P~ 49 (81)
T 3tnd_B 8 ETTVFLSNRSQAVRLPKAVALPENVKRVEVIAVGRTRIITPA 49 (81)
T ss_dssp EEEEEECSSSEEEEECGGGCCCTTCCSEEEEEETTEEEEEET
T ss_pred cceEeEeCCeeeEECCeeEeeCCCCcEEEEEEECCEEEEecC
Confidence 3578898877899999999997622 566777777663
Done!