Your job contains 1 sequence.
>040211
SNLWKHLINGGALPREPMPSGITARLPTLEDLEAYAIGQWERFLLQLISSAQAERSINFC
SSTMKVFQRGLLIQRDKEAPRLTESGFQFLLMDTNAQLWYIVREYISNSQHDSMLAYERG
INQADLISFLLELSFHVAGEAYNLKTLSEIQRSMIKDFADLGLVKLQQGRKESWFIPTIA
DSLETNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKESLYNAVENGLTAEQQNA
HPRVADRIPSVLENVCDQIRLWESDLNRVEMTPAHYYDEFPSREDSKKMRLVVNAEIHMH
MREFLRGQNK
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 040211
(310 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
ZFIN|ZDB-GENE-030131-6779 - symbol:gtf2h4 "general transc... 227 1.9e-38 2
FB|FBgn0261109 - symbol:mrn "marionette" species:7227 "Dr... 205 2.2e-29 2
ASPGD|ASPL0000068300 - symbol:AN7015 species:162425 "Emer... 185 5.5e-28 3
UNIPROTKB|Q767M2 - symbol:TFIIH "Uncharacterized protein"... 293 1.3e-25 1
UNIPROTKB|Q92759 - symbol:GTF2H4 "General transcription f... 291 2.2e-25 1
UNIPROTKB|P60027 - symbol:GTF2H4 "General transcription f... 291 2.2e-25 1
RGD|1303309 - symbol:Gtf2h4 "general transcription factor... 291 2.2e-25 1
UNIPROTKB|F1PGI3 - symbol:GTF2H4 "Uncharacterized protein... 290 2.8e-25 1
MGI|MGI:1338799 - symbol:Gtf2h4 "general transcription fa... 289 3.7e-25 1
UNIPROTKB|A6H7G8 - symbol:GTF2H4 "Uncharacterized protein... 288 4.8e-25 1
POMBASE|SPBC13G1.13 - symbol:tfb2 "transcription factor T... 287 4.9e-25 1
UNIPROTKB|G4NCE6 - symbol:MGG_00397 "RNA polymerase II tr... 179 1.1e-24 2
DICTYBASE|DDB_G0293228 - symbol:gtf2h4 "TFIIH subunit" sp... 232 9.7e-19 1
CGD|CAL0002355 - symbol:orf19.5846 species:5476 "Candida ... 186 2.4e-15 2
UNIPROTKB|B4DTJ5 - symbol:GTF2H4 "cDNA FLJ50212, highly s... 186 2.5e-14 1
WB|WBGene00013529 - symbol:Y73F8A.24 species:6239 "Caenor... 200 1.1e-13 1
SGD|S000006043 - symbol:TFB2 "Subunit of TFIIH and nucleo... 166 3.6e-12 2
>ZFIN|ZDB-GENE-030131-6779 [details] [associations]
symbol:gtf2h4 "general transcription factor IIH,
polypeptide 4" species:7955 "Danio rerio" [GO:0005634 "nucleus"
evidence=IEA] [GO:0004003 "ATP-dependent DNA helicase activity"
evidence=IEA] [GO:0006289 "nucleotide-excision repair"
evidence=IEA] [GO:0000439 "core TFIIH complex" evidence=IEA]
InterPro:IPR004598 Pfam:PF03849 ZFIN:ZDB-GENE-030131-6779
GO:GO:0005634 GO:GO:0006355 GO:GO:0006281 KO:K03144
PANTHER:PTHR13152 CTD:2968 HOVERGEN:HBG054205 TIGRFAMs:TIGR00625
EMBL:BC064301 IPI:IPI00511064 RefSeq:NP_956221.1 UniGene:Dr.75464
STRING:Q6P2T8 GeneID:334839 KEGG:dre:334839 InParanoid:Q6P2T8
NextBio:20810565 ArrayExpress:Q6P2T8 Uniprot:Q6P2T8
Length = 466
Score = 227 (85.0 bits), Expect = 1.9e-38, Sum P(2) = 1.9e-38
Identities = 44/114 (38%), Positives = 74/114 (64%)
Query: 183 LETNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKESLYNAVENGLTAEQ----- 237
+ETN+R+YAY+ S+L ++ LFS++ Y+ PNL+V +T+ES+ A+ NG+TA+Q
Sbjct: 313 VETNYRIYAYTNSELQIALVALFSEMLYRFPNLVVAQVTRESVQQAISNGITAQQIIHFL 372
Query: 238 -QNAHPRVADRIPSVLENVCDQIRLWESDLNRVEMTPAHYYDEFPSREDSKKMR 290
AHP + + P + + DQIRLWE + +R++ T Y++F S+ D + +R
Sbjct: 373 RTRAHPVMLKQTPVLPPTITDQIRLWELEKDRLQFTEGVLYNQFLSQADFEVLR 426
Score = 219 (82.2 bits), Expect = 1.9e-38, Sum P(2) = 1.9e-38
Identities = 51/150 (34%), Positives = 83/150 (55%)
Query: 29 LEDLEAYAIGQWERFLLQLISSAQAERSINFCSSTMKVFQRGLLIQRDKEAPRLTESGFQ 88
+E L+ YA+ +WE L ++ S A S + + Q GL+ EAP +T +GFQ
Sbjct: 138 VESLDRYAMERWEVILHFMVGSPSAAVSQDLAQL---LIQAGLMKSETGEAPCITSAGFQ 194
Query: 89 FLLMDTNAQLWYIVREYISNSQHDSMLAYERGINQADLISFLLELSFHVAGEAYNLKTLS 148
FLL+DT +QLWY +Y+ +Q RG++ +++SFL +LSF G Y+++ +S
Sbjct: 195 FLLLDTASQLWYFTLQYLKTAQ-------SRGMDLVEILSFLFQLSFSTLGRDYSVEGMS 247
Query: 149 EIQRSMIKDFADLGLVKLQQGRKESWFIPT 178
E + ++ + GLV Q+ RK + PT
Sbjct: 248 ESLLTFLQHLREFGLV-FQRKRKSRRYYPT 276
>FB|FBgn0261109 [details] [associations]
symbol:mrn "marionette" species:7227 "Drosophila
melanogaster" [GO:0005675 "holo TFIIH complex" evidence=ISS;IDA]
[GO:0006367 "transcription initiation from RNA polymerase II
promoter" evidence=ISS] [GO:0000439 "core TFIIH complex"
evidence=ISS;IPI] [GO:0004003 "ATP-dependent DNA helicase activity"
evidence=IEA] [GO:0001671 "ATPase activator activity" evidence=IDA]
[GO:0001111 "promoter clearance from RNA polymerase II promoter"
evidence=ISS] [GO:0006289 "nucleotide-excision repair"
evidence=IDA;IMP] [GO:0010224 "response to UV-B" evidence=IMP]
[GO:0005634 "nucleus" evidence=IDA] [GO:0001113 "transcriptional
open complex formation at RNA polymerase II promoter" evidence=ISS]
[GO:0006366 "transcription from RNA polymerase II promoter"
evidence=IDA] InterPro:IPR004598 Pfam:PF03849 EMBL:AE014296
GO:GO:0006355 GO:GO:0001671 GO:GO:0006367 GO:GO:0010224
GO:GO:0006289 GO:GO:0005675 GO:GO:0000439 KO:K03144
PANTHER:PTHR13152 OMA:CVLHYMV TIGRFAMs:TIGR00625
GeneTree:ENSGT00390000014159 FlyBase:FBgn0261109 RefSeq:NP_648780.1
ProteinModelPortal:Q9VUR1 SMR:Q9VUR1 IntAct:Q9VUR1 MINT:MINT-849737
STRING:Q9VUR1 PRIDE:Q9VUR1 EnsemblMetazoa:FBtr0075595 GeneID:39688
KEGG:dme:Dmel_CG7764 UCSC:CG7764-RA CTD:39688 InParanoid:Q9VUR1
PhylomeDB:Q9VUR1 GenomeRNAi:39688 NextBio:814886
ArrayExpress:Q9VUR1 Bgee:Q9VUR1 Uniprot:Q9VUR1
Length = 499
Score = 205 (77.2 bits), Expect = 2.2e-29, Sum P(2) = 2.2e-29
Identities = 51/129 (39%), Positives = 74/129 (57%)
Query: 183 LETNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKESLYNAVENGLTAEQ----- 237
+ETN+R+YAY+ S L +L LF+++ Y+ PNL+VG +T++S+ A+ G+TAEQ
Sbjct: 339 VETNYRVYAYTDSPLQVAVLGLFTELLYRFPNLVVGVLTRDSVRQALRGGITAEQIVSYL 398
Query: 238 -QNAHPRV-----ADRIPSVLE-NVCDQIRLWESDLNRVEMTPAHYYDEFPSREDSKKMR 290
Q AHP + A S L V DQI+LWE + NR T Y++F S D +R
Sbjct: 399 EQYAHPNMRMVESAIHSKSCLPPTVVDQIKLWELERNRFTYTEGVLYNQFLSHTDFVTLR 458
Query: 291 LVVNAEIHM 299
+ IHM
Sbjct: 459 DYAQS-IHM 466
Score = 180 (68.4 bits), Expect = 2.2e-29, Sum P(2) = 2.2e-29
Identities = 48/179 (26%), Positives = 91/179 (50%)
Query: 5 KHLINGGALPREPMPSGIT--ARLPTLEDLEAYAIGQWERFLLQLISSAQAERSINFCSS 62
+ ++ GG P PM + + ++ + L+ YA+ +W L ++ + + S
Sbjct: 138 RQVLLGGGKPW-PMTNTLDKDSKPRDIAFLDTYAMSRWRCVLHYMVGTGNRNGTDAEAIS 196
Query: 63 --TMKVFQRGLLIQRD-KEAPRLTESGFQFLLMDTNAQLWYIVREYISNSQHDSMLAYER 119
+++ L++RD ++ +T GFQFLL+DT AQ+W+ + +Y+ + ER
Sbjct: 197 PDAVRILLHANLMKRDERDGITITRQGFQFLLLDTRAQVWHFMLQYLDTCE-------ER 249
Query: 120 GINQADLISFLLELSFHVAGEAYNLKTLSEIQRSMIKDFADLGLVKLQQGRKESWFIPT 178
GI+ + +S L +LSF G Y+ + ++ + ++ + GLV Q+ RKE F PT
Sbjct: 250 GISLPECLSMLFQLSFSTLGRDYSSEGMNSQMLTFLQHLREFGLV-FQRKRKEGRFYPT 307
>ASPGD|ASPL0000068300 [details] [associations]
symbol:AN7015 species:162425 "Emericella nidulans"
[GO:0006281 "DNA repair" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0003674
"molecular_function" evidence=ND] InterPro:IPR004598 Pfam:PF03849
GO:GO:0005634 GO:GO:0006355 GO:GO:0006281 EMBL:BN001304
EMBL:AACD01000117 eggNOG:COG5144 KO:K03144 PANTHER:PTHR13152
HOGENOM:HOG000170529 OMA:CVLHYMV TIGRFAMs:TIGR00625
OrthoDB:EOG4CZFQD RefSeq:XP_664619.1 STRING:Q5AXG5
EnsemblFungi:CADANIAT00000461 GeneID:2870093 KEGG:ani:AN7015.2
Uniprot:Q5AXG5
Length = 482
Score = 185 (70.2 bits), Expect = 5.5e-28, Sum P(3) = 5.5e-28
Identities = 48/162 (29%), Positives = 85/162 (52%)
Query: 29 LEDLEAYAIGQWERFLLQLI--SSAQAERSINFCSSTMKVFQRGLLIQ-RDKEAPRLTES 85
+ DL+ YA QWE L ++ S +R +N ++ Q G L++ RD+ +T+
Sbjct: 139 IHDLDEYARRQWEGVLGYMVGTSGLGIQRDVNLSKGVKQLLQAGHLVEIRDRRV-EITQD 197
Query: 86 GFQFLLMDTNAQLWYIVREYISNSQHDSMLAYERGINQADLISFLLELSFHVAGEAYNLK 145
GF F+L D Q+W+I+ Y+ +++ G++ +++SF+ LS G++Y K
Sbjct: 198 GFAFVLQDVGTQVWHILILYVESAE-------AIGMDSVEVLSFIFLLSSLELGKSYEKK 250
Query: 146 TLSEIQRSMIKDFADLGLVKLQQGRKESWFIPT-IADSLETN 186
L+ Q + D AD G+V Q + S F PT +A +L ++
Sbjct: 251 HLTSNQLRTLTDLADFGIV-YQDSPEASHFYPTRLATTLTSD 291
Score = 155 (59.6 bits), Expect = 5.5e-28, Sum P(3) = 5.5e-28
Identities = 27/68 (39%), Positives = 49/68 (72%)
Query: 183 LETNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKESLYNAVENGLTAEQ----- 237
+ETN+R+YAY++S L ++ LF+ ++Y+ PNL+ G +T++S+ A+E G+TA+Q
Sbjct: 321 IETNYRLYAYTSSPLQISLIALFTTLKYRFPNLVTGKVTRQSIRRAIEMGITADQIISYL 380
Query: 238 -QNAHPRV 244
+AHP++
Sbjct: 381 ATHAHPQM 388
Score = 71 (30.1 bits), Expect = 5.5e-28, Sum P(3) = 5.5e-28
Identities = 16/35 (45%), Positives = 22/35 (62%)
Query: 249 PSVLE-NVCDQIRLWESDLNRVEMTPAHYYDEFPS 282
PSVL V DQIRLW+ + +RV+ T + +F S
Sbjct: 405 PSVLPPTVVDQIRLWQLERDRVKATAGFLFKDFVS 439
>UNIPROTKB|Q767M2 [details] [associations]
symbol:TFIIH "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0008353 "RNA polymerase II carboxy-terminal domain
kinase activity" evidence=IEA] [GO:0006366 "transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0005675 "holo TFIIH
complex" evidence=IEA] [GO:0006289 "nucleotide-excision repair"
evidence=IEA] [GO:0004003 "ATP-dependent DNA helicase activity"
evidence=IEA] [GO:0000439 "core TFIIH complex" evidence=IEA]
InterPro:IPR004598 Pfam:PF03849 GO:GO:0006355 GO:GO:0006281
GO:GO:0006366 GO:GO:0008353 GO:GO:0005675 GO:GO:0008094
EMBL:AB113354 EMBL:AB113355 eggNOG:COG5144 KO:K03144
PANTHER:PTHR13152 CTD:2968 HOGENOM:HOG000170529 HOVERGEN:HBG054205
OMA:CVLHYMV OrthoDB:EOG4F1X34 TIGRFAMs:TIGR00625
GeneTree:ENSGT00390000014159 EMBL:CT971577 RefSeq:NP_001116592.1
UniGene:Ssc.7512 STRING:Q767M2 Ensembl:ENSSSCT00000001505
GeneID:100144458 KEGG:ssc:100144458 Uniprot:Q767M2
Length = 463
Score = 293 (108.2 bits), Expect = 1.3e-25, P = 1.3e-25
Identities = 92/307 (29%), Positives = 153/307 (49%)
Query: 2 NLWKHLINGG-ALPREPMPSGITARLPTLEDLEAYAIGQWERFLLQLISSAQAERSINFC 60
NL L+ GG A + G + L+ YA +WE L ++ S A S +
Sbjct: 118 NLRIALLGGGKAWSDDTSQLGPDKHARDVPSLDKYAEERWEVVLHFMVGSPSAAVSQDLA 177
Query: 61 SSTMKVFQRGLLIQRDK-EAPRLTESGFQFLLMDTNAQLWYIVREYISNSQHDSMLAYER 119
+ Q GL+ + E P +T +GFQFLL+DT AQLWY + +Y+ +Q M E
Sbjct: 178 QL---LSQAGLMKSAEPGEPPCITSAGFQFLLLDTPAQLWYFMLQYLQTAQSRGMDLVEI 234
Query: 120 GINQADLISF-LLELSFHVAGEAYNL----KTLSEI------QRSMIKDFADLGLVKLQQ 168
++ +SF L + V G + +L + L E+ +R + + + L
Sbjct: 235 -LSFLFQLSFSTLGKDYSVEGMSDSLLNFLQHLRELGLVFQRKRKSRRYYPTRLAINLSS 293
Query: 169 GRKESWFIPTIADS----LETNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKES 224
G + T+ +ETN+R+YAY+ S+L ++ LFS++ Y+ PN++V +T+ES
Sbjct: 294 GVSGAG--GTVHQPGFIVVETNYRLYAYTESELQIALIALFSEMLYRFPNMVVAQVTRES 351
Query: 225 LYNAVENGLTAEQ------QNAHPRVADRIPSVLENVCDQIRLWESDLNRVEMTPAHYYD 278
+ A+ +G+TA+Q AHP + + P + + DQIRLWE + +R+ T Y+
Sbjct: 352 VQQAIASGITAQQIIHFLRTRAHPVMLKQTPVLPPTITDQIRLWELERDRLRFTEGVLYN 411
Query: 279 EFPSRED 285
+F S+ D
Sbjct: 412 QFLSQVD 418
>UNIPROTKB|Q92759 [details] [associations]
symbol:GTF2H4 "General transcription factor IIH subunit 4"
species:9606 "Homo sapiens" [GO:0000439 "core TFIIH complex"
evidence=IEA] [GO:0004003 "ATP-dependent DNA helicase activity"
evidence=IEA] [GO:0006366 "transcription from RNA polymerase II
promoter" evidence=IDA;TAS] [GO:0004672 "protein kinase activity"
evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005675 "holo TFIIH complex" evidence=IDA] [GO:0008353 "RNA
polymerase II carboxy-terminal domain kinase activity"
evidence=IDA] [GO:0008094 "DNA-dependent ATPase activity"
evidence=IDA] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=TAS] [GO:0000718
"nucleotide-excision repair, DNA damage removal" evidence=TAS]
[GO:0005654 "nucleoplasm" evidence=TAS] [GO:0006281 "DNA repair"
evidence=TAS] [GO:0006283 "transcription-coupled
nucleotide-excision repair" evidence=TAS] [GO:0006289
"nucleotide-excision repair" evidence=TAS] [GO:0006360
"transcription from RNA polymerase I promoter" evidence=TAS]
[GO:0006361 "transcription initiation from RNA polymerase I
promoter" evidence=TAS] [GO:0006362 "transcription elongation from
RNA polymerase I promoter" evidence=TAS] [GO:0006363 "termination
of RNA polymerase I transcription" evidence=TAS] [GO:0006367
"transcription initiation from RNA polymerase II promoter"
evidence=TAS] [GO:0006368 "transcription elongation from RNA
polymerase II promoter" evidence=TAS] [GO:0006370
"7-methylguanosine mRNA capping" evidence=TAS] [GO:0010467 "gene
expression" evidence=TAS] [GO:0016032 "viral reproduction"
evidence=TAS] [GO:0050434 "positive regulation of viral
transcription" evidence=TAS] [GO:0006468 "protein phosphorylation"
evidence=IDA] Reactome:REACT_216 Reactome:REACT_71
InterPro:IPR004598 Pfam:PF03849 Reactome:REACT_116125 GO:GO:0016032
EMBL:BA000025 EMBL:CH471081 Reactome:REACT_1675 GO:GO:0006468
GO:GO:0003700 GO:GO:0006368 GO:GO:0006367 Reactome:REACT_1788
GO:GO:0005675 GO:GO:0006370 GO:GO:0000718 GO:GO:0050434
GO:GO:0006363 GO:GO:0006362 GO:GO:0006361 GO:GO:0006283
EMBL:CR759747 EMBL:AL773541 EMBL:BX927194 EMBL:CR936875
eggNOG:COG5144 KO:K03144 PANTHER:PTHR13152 EMBL:Y07595
EMBL:BT007321 EMBL:AY124590 EMBL:AB088103 EMBL:AB202101
EMBL:AB103609 EMBL:BC004935 EMBL:BC016302 IPI:IPI00016839
RefSeq:NP_001508.1 UniGene:Hs.485070 ProteinModelPortal:Q92759
SMR:Q92759 DIP:DIP-48376N STRING:Q92759 PhosphoSite:Q92759
DMDM:17380328 PaxDb:Q92759 PRIDE:Q92759 DNASU:2968
Ensembl:ENST00000259895 Ensembl:ENST00000376316
Ensembl:ENST00000376326 Ensembl:ENST00000400450
Ensembl:ENST00000413314 Ensembl:ENST00000416773
Ensembl:ENST00000423881 Ensembl:ENST00000434226
Ensembl:ENST00000435498 Ensembl:ENST00000438348
Ensembl:ENST00000440824 Ensembl:ENST00000456968 GeneID:2968
KEGG:hsa:2968 UCSC:uc003nsa.1 CTD:2968 GeneCards:GC06P030875
HGNC:HGNC:4658 MIM:601760 neXtProt:NX_Q92759 PharmGKB:PA29044
HOGENOM:HOG000170529 HOVERGEN:HBG054205 InParanoid:Q92759
OMA:CVLHYMV OrthoDB:EOG4F1X34 PhylomeDB:Q92759 GenomeRNAi:2968
NextBio:11764 ArrayExpress:Q92759 Bgee:Q92759 CleanEx:HS_GTF2H4
Genevestigator:Q92759 GermOnline:ENSG00000137411 TIGRFAMs:TIGR00625
Uniprot:Q92759
Length = 462
Score = 291 (107.5 bits), Expect = 2.2e-25, P = 2.2e-25
Identities = 92/307 (29%), Positives = 152/307 (49%)
Query: 2 NLWKHLINGG-ALPREPMPSGITARLPTLEDLEAYAIGQWERFLLQLISSAQAERSINFC 60
NL L+ GG A + G + L+ YA +WE L ++ S A S +
Sbjct: 117 NLRIALLGGGKAWSDDTSQLGPDKHARDVPSLDKYAEERWEVVLHFMVGSPSAAVSQDLA 176
Query: 61 SSTMKVFQRGLLIQRDK-EAPRLTESGFQFLLMDTNAQLWYIVREYISNSQHDSMLAYER 119
+ Q GL+ + E P +T +GFQFLL+DT AQLWY + +Y+ +Q M E
Sbjct: 177 QL---LSQAGLMKSTEPGEPPCITSAGFQFLLLDTPAQLWYFMLQYLQTAQSRGMDLVEI 233
Query: 120 GINQADLISF-LLELSFHVAGEAYNL----KTLSEI------QRSMIKDFADLGLVKLQQ 168
++ +SF L + V G + +L + L E +R + + + L
Sbjct: 234 -LSFLFQLSFSTLGKDYSVEGMSDSLLNFLQHLREFGLVFQRKRKSRRYYPTRLAINLSS 292
Query: 169 GRKESWFIPTIADS----LETNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKES 224
G + T+ +ETN+R+YAY+ S+L ++ LFS++ Y+ PN++V +T+ES
Sbjct: 293 GVSGAG--GTVHQPGFIVVETNYRLYAYTESELQIALIALFSEMLYRFPNMVVAQVTRES 350
Query: 225 LYNAVENGLTAEQ------QNAHPRVADRIPSVLENVCDQIRLWESDLNRVEMTPAHYYD 278
+ A+ +G+TA+Q AHP + + P + + DQIRLWE + +R+ T Y+
Sbjct: 351 VQQAIASGITAQQIIHFLRTRAHPVMLKQTPVLPPTITDQIRLWELERDRLRFTEGVLYN 410
Query: 279 EFPSRED 285
+F S+ D
Sbjct: 411 QFLSQVD 417
>UNIPROTKB|P60027 [details] [associations]
symbol:GTF2H4 "General transcription factor IIH subunit 4"
species:9598 "Pan troglodytes" [GO:0005675 "holo TFIIH complex"
evidence=ISS] [GO:0006366 "transcription from RNA polymerase II
promoter" evidence=ISS] [GO:0004672 "protein kinase activity"
evidence=ISS] [GO:0008094 "DNA-dependent ATPase activity"
evidence=ISS] [GO:0008353 "RNA polymerase II carboxy-terminal
domain kinase activity" evidence=ISS] InterPro:IPR004598
Pfam:PF03849 GO:GO:0006355 GO:GO:0006281 EMBL:BA000041
GO:GO:0006366 GO:GO:0008353 GO:GO:0005675 GO:GO:0008094
eggNOG:COG5144 KO:K03144 PANTHER:PTHR13152 CTD:2968
HOGENOM:HOG000170529 HOVERGEN:HBG054205 OMA:CVLHYMV
OrthoDB:EOG4F1X34 TIGRFAMs:TIGR00625 EMBL:AB210199 EMBL:AB210200
RefSeq:NP_001038968.1 UniGene:Ptr.6202 ProteinModelPortal:P60027
SMR:P60027 STRING:P60027 PRIDE:P60027 Ensembl:ENSPTRT00000033136
GeneID:462549 KEGG:ptr:462549 GeneTree:ENSGT00390000014159
InParanoid:P60027 NextBio:20841799 Uniprot:P60027
Length = 462
Score = 291 (107.5 bits), Expect = 2.2e-25, P = 2.2e-25
Identities = 92/307 (29%), Positives = 152/307 (49%)
Query: 2 NLWKHLINGG-ALPREPMPSGITARLPTLEDLEAYAIGQWERFLLQLISSAQAERSINFC 60
NL L+ GG A + G + L+ YA +WE L ++ S A S +
Sbjct: 117 NLRIALLGGGKAWSDDTSQLGPDKHARDVPSLDKYAEERWEVVLHFMVGSPSAAVSQDLA 176
Query: 61 SSTMKVFQRGLLIQRDK-EAPRLTESGFQFLLMDTNAQLWYIVREYISNSQHDSMLAYER 119
+ Q GL+ + E P +T +GFQFLL+DT AQLWY + +Y+ +Q M E
Sbjct: 177 QL---LSQAGLMKSTEPGEPPCITSAGFQFLLLDTPAQLWYFMLQYLQTAQSRGMDLVEI 233
Query: 120 GINQADLISF-LLELSFHVAGEAYNL----KTLSEI------QRSMIKDFADLGLVKLQQ 168
++ +SF L + V G + +L + L E +R + + + L
Sbjct: 234 -LSFLFQLSFSTLGKDYSVEGMSDSLLNFLQHLREFGLVFQRKRKSRRYYPTRLAINLSS 292
Query: 169 GRKESWFIPTIADS----LETNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKES 224
G + T+ +ETN+R+YAY+ S+L ++ LFS++ Y+ PN++V +T+ES
Sbjct: 293 GVSGAG--GTVHQPGFIVVETNYRLYAYTESELQIALIALFSEMLYRFPNMVVAQVTRES 350
Query: 225 LYNAVENGLTAEQ------QNAHPRVADRIPSVLENVCDQIRLWESDLNRVEMTPAHYYD 278
+ A+ +G+TA+Q AHP + + P + + DQIRLWE + +R+ T Y+
Sbjct: 351 VQQAIASGITAQQIIHFLRTRAHPVMLKQTPVLPPTITDQIRLWELERDRLRFTEGVLYN 410
Query: 279 EFPSRED 285
+F S+ D
Sbjct: 411 QFLSQVD 417
>RGD|1303309 [details] [associations]
symbol:Gtf2h4 "general transcription factor II H, polypeptide 4"
species:10116 "Rattus norvegicus" [GO:0000439 "core TFIIH complex"
evidence=IEA] [GO:0004003 "ATP-dependent DNA helicase activity"
evidence=IEA] [GO:0005675 "holo TFIIH complex" evidence=IEA;ISO]
[GO:0006289 "nucleotide-excision repair" evidence=IEA] [GO:0006366
"transcription from RNA polymerase II promoter" evidence=IEA;ISO]
[GO:0006468 "protein phosphorylation" evidence=ISO] [GO:0008353
"RNA polymerase II carboxy-terminal domain kinase activity"
evidence=IEA;ISO] [GO:0004672 "protein kinase activity"
evidence=ISO] [GO:0008094 "DNA-dependent ATPase activity"
evidence=ISO] InterPro:IPR004598 Pfam:PF03849 RGD:1303309
GO:GO:0006355 GO:GO:0006281 GO:GO:0006366 GO:GO:0008353
GO:GO:0005675 GO:GO:0008094 EMBL:BX883047 eggNOG:COG5144 KO:K03144
PANTHER:PTHR13152 CTD:2968 HOGENOM:HOG000170529 HOVERGEN:HBG054205
OMA:CVLHYMV OrthoDB:EOG4F1X34 TIGRFAMs:TIGR00625
GeneTree:ENSGT00390000014159 EMBL:BC127469 IPI:IPI00215269
RefSeq:NP_997666.1 UniGene:Rn.34122 STRING:Q6MG20
Ensembl:ENSRNOT00000001103 GeneID:294236 KEGG:rno:294236
UCSC:RGD:1303309 InParanoid:Q6MG20 NextBio:637807
Genevestigator:Q6MG20 Uniprot:Q6MG20
Length = 463
Score = 291 (107.5 bits), Expect = 2.2e-25, P = 2.2e-25
Identities = 92/307 (29%), Positives = 152/307 (49%)
Query: 2 NLWKHLINGG-ALPREPMPSGITARLPTLEDLEAYAIGQWERFLLQLISSAQAERSINFC 60
NL L+ GG A + G + L+ YA +WE L ++ S A S +
Sbjct: 118 NLRIALLGGGKAWSDDTSQLGPDKHARDVPSLDKYAEERWEVVLHFMVGSPSAAVSQDLA 177
Query: 61 SSTMKVFQRGLLIQRDK-EAPRLTESGFQFLLMDTNAQLWYIVREYISNSQHDSMLAYER 119
+ Q GL+ + E P +T +GFQFLL+DT AQLWY + +Y+ +Q M E
Sbjct: 178 QL---LSQAGLMKSTEPGEPPCITSAGFQFLLLDTPAQLWYFMLQYLQTAQSRGMDLVEI 234
Query: 120 GINQADLISF-LLELSFHVAGEAYNL----KTLSEI------QRSMIKDFADLGLVKLQQ 168
++ +SF L + V G + +L + L E +R + + + L
Sbjct: 235 -LSFLFQLSFSTLGKDYSVEGMSDSLLNFLQHLREFGLVFQRKRKSRRYYPTRLAINLSS 293
Query: 169 GRKESWFIPTIADS----LETNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKES 224
G + T+ +ETN+R+YAY+ S+L ++ LFS++ Y+ PN++V +T+ES
Sbjct: 294 GVSGAG--GTVHQPGFIVVETNYRLYAYTESELQIALIALFSEMLYRFPNMVVAQVTRES 351
Query: 225 LYNAVENGLTAEQ------QNAHPRVADRIPSVLENVCDQIRLWESDLNRVEMTPAHYYD 278
+ A+ +G+TA+Q AHP + + P + + DQIRLWE + +R+ T Y+
Sbjct: 352 VQQAIASGITAQQIIHFLRTRAHPVMLKQTPVLPPTITDQIRLWELERDRLRFTEGVLYN 411
Query: 279 EFPSRED 285
+F S+ D
Sbjct: 412 QFLSQVD 418
>UNIPROTKB|F1PGI3 [details] [associations]
symbol:GTF2H4 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0006289 "nucleotide-excision repair"
evidence=IEA] [GO:0004003 "ATP-dependent DNA helicase activity"
evidence=IEA] [GO:0000439 "core TFIIH complex" evidence=IEA]
InterPro:IPR004598 Pfam:PF03849 GO:GO:0005634 GO:GO:0006355
GO:GO:0006281 KO:K03144 PANTHER:PTHR13152 OMA:CVLHYMV
TIGRFAMs:TIGR00625 GeneTree:ENSGT00390000014159 EMBL:AAEX03008206
RefSeq:XP_003639474.1 Ensembl:ENSCAFT00000000727 GeneID:100856712
KEGG:cfa:100856712 Uniprot:F1PGI3
Length = 463
Score = 290 (107.1 bits), Expect = 2.8e-25, P = 2.8e-25
Identities = 91/305 (29%), Positives = 150/305 (49%)
Query: 2 NLWKHLINGG-ALPREPMPSGITARLPTLEDLEAYAIGQWERFLLQLISSAQAERSINFC 60
NL L+ GG A + G + L+ YA +WE L ++ S A S +
Sbjct: 118 NLRIALLGGGKAWSDDTSQLGPDKHARDVPSLDKYAEERWEVVLHFMVGSPSAAVSQDLA 177
Query: 61 SSTMKVFQRGLLIQRDK-EAPRLTESGFQFLLMDTNAQLWYIVREYISNSQHDSMLAYER 119
+ Q GL+ + E P +T +GFQFLL+DT AQLWY + +Y+ +Q M E
Sbjct: 178 QL---LSQAGLMKSTEPGEPPCITSAGFQFLLLDTPAQLWYFMLQYLQTAQSRGMDLVEI 234
Query: 120 GINQADLISF-LLELSFHVAGEAYNL----KTLSEI------QRSMIKDFADLGLVKLQQ 168
++ +SF L + V G + +L + L E +R + + + L
Sbjct: 235 -LSFLFQLSFSTLGKDYSVEGMSDSLLNFLQHLREFGLVFQRKRKSRRYYPTRLAINLSS 293
Query: 169 GRKESWFIPTIADSL--ETNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKESLY 226
G + + ETN+R+YAY+ S+L ++ LFS++ Y+ PN++V +T+ES+
Sbjct: 294 GVSGAGGTAHQPGFIIVETNYRLYAYTESELQIALIALFSEMLYRFPNMVVAQVTRESVQ 353
Query: 227 NAVENGLTAEQ------QNAHPRVADRIPSVLENVCDQIRLWESDLNRVEMTPAHYYDEF 280
A+ +G+TA+Q AHP + + P + + DQIRLWE + +R+ T Y++F
Sbjct: 354 QAIASGITAQQIIHFLRTRAHPVMLKQTPVLPPTITDQIRLWELERDRLRFTEGVLYNQF 413
Query: 281 PSRED 285
S+ D
Sbjct: 414 LSQVD 418
>MGI|MGI:1338799 [details] [associations]
symbol:Gtf2h4 "general transcription factor II H,
polypeptide 4" species:10090 "Mus musculus" [GO:0000439 "core TFIIH
complex" evidence=IEA] [GO:0004003 "ATP-dependent DNA helicase
activity" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005675 "holo TFIIH complex" evidence=ISO] [GO:0006281 "DNA
repair" evidence=IEA] [GO:0006289 "nucleotide-excision repair"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0006366 "transcription from RNA
polymerase II promoter" evidence=ISO] [GO:0006468 "protein
phosphorylation" evidence=ISO] [GO:0006974 "response to DNA damage
stimulus" evidence=IEA] InterPro:IPR004598 Pfam:PF03849
MGI:MGI:1338799 GO:GO:0006355 GO:GO:0006281 GO:GO:0006366
GO:GO:0008353 GO:GO:0005675 GO:GO:0008094 eggNOG:COG5144 KO:K03144
PANTHER:PTHR13152 CTD:2968 HOGENOM:HOG000170529 HOVERGEN:HBG054205
OMA:CVLHYMV OrthoDB:EOG4F1X34 TIGRFAMs:TIGR00625 EMBL:AF054823
EMBL:BC012638 IPI:IPI00118172 RefSeq:NP_034494.1 UniGene:Mm.10182
ProteinModelPortal:O70422 SMR:O70422 IntAct:O70422 STRING:O70422
PhosphoSite:O70422 PaxDb:O70422 PRIDE:O70422
Ensembl:ENSMUST00000001565 Ensembl:ENSMUST00000160734 GeneID:14885
KEGG:mmu:14885 InParanoid:O70422 NextBio:287167 Bgee:O70422
CleanEx:MM_GTF2H4 Genevestigator:O70422
GermOnline:ENSMUSG00000001524 Uniprot:O70422
Length = 463
Score = 289 (106.8 bits), Expect = 3.7e-25, P = 3.7e-25
Identities = 92/307 (29%), Positives = 152/307 (49%)
Query: 2 NLWKHLINGG-ALPREPMPSGITARLPTLEDLEAYAIGQWERFLLQLISSAQAERSINFC 60
NL L+ GG A + G + L+ YA +WE L ++ S A S +
Sbjct: 118 NLRIALLGGGKAWSDDTSQLGPDKHARDVPSLDKYAEERWEVVLHFMVGSPSAAVSQDLA 177
Query: 61 SSTMKVFQRGLLIQRDK-EAPRLTESGFQFLLMDTNAQLWYIVREYISNSQHDSMLAYER 119
+ Q GL+ + E P +T +GFQFLL+DT AQLWY + +Y+ +Q M E
Sbjct: 178 QL---LSQAGLMKSTEPGEPPCITSAGFQFLLLDTPAQLWYFMLQYLQTAQSRGMDLVEI 234
Query: 120 GINQADLISF-LLELSFHVAGEAYNL----KTLSEI------QRSMIKDFADLGLVKLQQ 168
++ +SF L + V G + +L + L E +R + + + L
Sbjct: 235 -LSFLFQLSFSTLGKDYSVEGMSDSLLNFLQHLREFGLVFQRKRKSRRYYPTRLAINLSS 293
Query: 169 GRKESWFIPTIADS----LETNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKES 224
G + T+ +ETN+R+YAY+ S+L ++ LFS++ Y+ PN++V +T+ES
Sbjct: 294 GVSGAG--GTVHQPGFIVVETNYRLYAYTESELQIALIALFSEMLYRFPNMVVAQVTRES 351
Query: 225 LYNAVENGLTAEQ------QNAHPRVADRIPSVLENVCDQIRLWESDLNRVEMTPAHYYD 278
+ A+ +G+TA+Q AHP + + P + + DQIRLWE + +R+ T Y+
Sbjct: 352 VQQAIASGITAQQIIHFLRTRAHPVMLKQNPVLPPTITDQIRLWELERDRLRFTEGVLYN 411
Query: 279 EFPSRED 285
+F S+ D
Sbjct: 412 QFLSQVD 418
>UNIPROTKB|A6H7G8 [details] [associations]
symbol:GTF2H4 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0008353 "RNA polymerase II carboxy-terminal domain
kinase activity" evidence=IEA] [GO:0006366 "transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0005675 "holo TFIIH
complex" evidence=IEA] [GO:0006289 "nucleotide-excision repair"
evidence=IEA] [GO:0004003 "ATP-dependent DNA helicase activity"
evidence=IEA] [GO:0000439 "core TFIIH complex" evidence=IEA]
InterPro:IPR004598 Pfam:PF03849 GO:GO:0006355 GO:GO:0006281
GO:GO:0006366 GO:GO:0008353 GO:GO:0005675 GO:GO:0008094
eggNOG:COG5144 KO:K03144 PANTHER:PTHR13152 CTD:2968
HOGENOM:HOG000170529 HOVERGEN:HBG054205 OMA:CVLHYMV
TIGRFAMs:TIGR00625 GeneTree:ENSGT00390000014159 EMBL:DAAA02055395
EMBL:BC146240 IPI:IPI00707368 RefSeq:NP_001094527.1
UniGene:Bt.98689 Ensembl:ENSBTAT00000054213 GeneID:100137723
KEGG:bta:100137723 NextBio:20789427 Uniprot:A6H7G8
Length = 463
Score = 288 (106.4 bits), Expect = 4.8e-25, P = 4.8e-25
Identities = 91/305 (29%), Positives = 150/305 (49%)
Query: 2 NLWKHLINGG-ALPREPMPSGITARLPTLEDLEAYAIGQWERFLLQLISSAQAERSINFC 60
NL L+ GG A + G + L+ YA +WE L ++ S A S +
Sbjct: 118 NLRIALLGGGKAWSDDTSQLGPDKHARDVLSLDKYAEERWEVVLHFMVGSPSAAVSQDLA 177
Query: 61 SSTMKVFQRGLLIQRDK-EAPRLTESGFQFLLMDTNAQLWYIVREYISNSQHDSMLAYER 119
+ Q GL+ + E P +T +GFQFLL+DT AQLWY + +Y+ +Q M E
Sbjct: 178 QL---LSQAGLMKSAEPGEPPCITSAGFQFLLLDTPAQLWYFMLQYLQTAQSRGMDLVEI 234
Query: 120 GINQADLISF-LLELSFHVAGEAYNL----KTLSEI------QRSMIKDFADLGLVKLQQ 168
++ +SF L + V G + +L + L E +R + + + L
Sbjct: 235 -LSFLFQLSFSTLGKDYSVEGMSDSLLNFLQHLREFGLVFQRKRKSRRYYPTRLAINLSS 293
Query: 169 GRKESWFIPTIADSL--ETNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKESLY 226
G + + ETN+R+YAY+ S+L ++ LFS++ Y+ PN++V +T+ES+
Sbjct: 294 GVSGAGGTAHQPGFIVVETNYRLYAYTESELQIALIALFSEMLYRFPNMVVAQVTRESVQ 353
Query: 227 NAVENGLTAEQ------QNAHPRVADRIPSVLENVCDQIRLWESDLNRVEMTPAHYYDEF 280
A+ +G+TA+Q AHP + + P + + DQIRLWE + +R+ T Y++F
Sbjct: 354 QAIASGITAQQIIHFLRTRAHPVMLKQTPVLPPTITDQIRLWELERDRLRFTEGVLYNQF 413
Query: 281 PSRED 285
S+ D
Sbjct: 414 LSQVD 418
>POMBASE|SPBC13G1.13 [details] [associations]
symbol:tfb2 "transcription factor TFIIH complex subunit
Tfb2" species:4896 "Schizosaccharomyces pombe" [GO:0000112
"nucleotide-excision repair factor 3 complex" evidence=ISO]
[GO:0000439 "core TFIIH complex" evidence=ISO] [GO:0000717
"nucleotide-excision repair, DNA duplex unwinding" evidence=ISO]
[GO:0000991 "core RNA polymerase II binding transcription factor
activity" evidence=ISO] [GO:0004003 "ATP-dependent DNA helicase
activity" evidence=IEA] [GO:0005675 "holo TFIIH complex"
evidence=ISO] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0006367 "transcription initiation from RNA polymerase II
promoter" evidence=ISO] InterPro:IPR004598 Pfam:PF03849
PomBase:SPBC13G1.13 GO:GO:0005737 GO:GO:0006355 EMBL:CU329671
GenomeReviews:CU329671_GR GO:GO:0006367 GO:GO:0000991 GO:GO:0005675
GO:GO:0000717 GO:GO:0000439 GO:GO:0000112 eggNOG:COG5144 KO:K03144
OMA:PVNCLPI PANTHER:PTHR13152 HOGENOM:HOG000170529
TIGRFAMs:TIGR00625 PIR:T39414 RefSeq:NP_596563.1
ProteinModelPortal:P87303 IntAct:P87303 STRING:P87303
EnsemblFungi:SPBC13G1.13.1 GeneID:2539790 KEGG:spo:SPBC13G1.13
OrthoDB:EOG4CZFQD NextBio:20800939 Uniprot:P87303
Length = 447
Score = 287 (106.1 bits), Expect = 4.9e-25, P = 4.9e-25
Identities = 84/283 (29%), Positives = 139/283 (49%)
Query: 26 LPTLEDLEAYAIGQWERFLLQLISSAQAERSINFCSSTMKVFQRGLLIQRDKEAPRLTES 85
L T++ L+AYA WE L ++ + +A+ + + +RG L+ K R+T +
Sbjct: 125 LVTVDFLDAYAKETWETILHFMVGTPEAKFP---GEGVLSLLKRGGLMSGPKNQLRITRA 181
Query: 86 GFQFLLMDTNAQLWYIVREYISNSQHDSM-----LAYERGINQADL-----ISFLLELS- 134
GFQFLL D NAQ+W ++ +Y+ S+ M L + + DL + FL +
Sbjct: 182 GFQFLLQDINAQIWTLLLDYLKLSEDTHMDPVQVLHFLFMLGSLDLGRAYSVDFLTDTQQ 241
Query: 135 -----FHVAGEAYNLKTLSE------IQRSMIKDFADLGLVKLQQGRKESWFIPTIADSL 183
G Y K S+ + + D+ L K + + FI +
Sbjct: 242 IMLEDLREYGLVYQRKITSKRFYPTRLATGLTTDYRSLH-GKQSENDDDKGFI-----IV 295
Query: 184 ETNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKESLYNAVENGLTAEQ------ 237
ETN+R+YAY++S L I+ LF+ + + NL+VG IT++S+ A+ NG+ AEQ
Sbjct: 296 ETNYRLYAYTSSPLQIAIIGLFANLRARFSNLVVGVITRDSIRRALMNGIAAEQIITYLT 355
Query: 238 QNAHPRVADRIPSVLENVCDQIRLWESDLNRVEMTPAHYYDEF 280
+AHP++ +P + + DQI LWE + NR+ TP + +F
Sbjct: 356 THAHPQMRSNVPLLPPTLVDQIYLWELEKNRLRATPGILFRDF 398
>UNIPROTKB|G4NCE6 [details] [associations]
symbol:MGG_00397 "RNA polymerase II transcription factor B
subunit 2" species:242507 "Magnaporthe oryzae 70-15" [GO:0043581
"mycelium development" evidence=IEP] InterPro:IPR004598
Pfam:PF03849 GO:GO:0005634 GO:GO:0006355 EMBL:CM001235
GO:GO:0006281 GO:GO:0043581 KO:K03144 PANTHER:PTHR13152
TIGRFAMs:TIGR00625 RefSeq:XP_003718679.1 EnsemblFungi:MGG_00397T0
GeneID:2674140 KEGG:mgr:MGG_00397 Uniprot:G4NCE6
Length = 490
Score = 179 (68.1 bits), Expect = 1.1e-24, Sum P(2) = 1.1e-24
Identities = 56/192 (29%), Positives = 97/192 (50%)
Query: 7 LINGGALPREPMPSGITARLPTLED---LEAYAIGQWERFLLQLISSAQAERSI------ 57
L GG+ +PS + +P D L+ +A +W+ L +++S + S+
Sbjct: 115 LEGGGSHNSFGVPSSLP--IPPQVDVAFLDKWARSRWDAILHYVVNSVEETDSMEPSKKY 172
Query: 58 NFCSS----TMKVF--QRGLLIQRDKEAPRLTESGFQFLLMDTNAQLWYIVREYISNSQH 111
NF S T+K Q GL+ +R E +T++GF FLL + NAQ+W ++ +++ +
Sbjct: 173 NFGGSKLQDTVKTLLVQGGLVQRRSSERISITKTGFTFLLQEANAQVWTLLLQWLHSVNE 232
Query: 112 DSMLAYERGINQADLISFLLELSFHVAGEAYNLKTLSEIQRSMIKDFADLGLVKLQQGRK 171
D+ R + D++SFL L G+AY+ LSE +R+M+ D D GLV +
Sbjct: 233 DNT---NRAV---DMLSFLFMLGTLELGQAYDTGALSEERRNMLPDLNDFGLVYIPPSNP 286
Query: 172 ESWFIPTIADSL 183
+ +F +A +L
Sbjct: 287 DQYFPTRLATTL 298
Score = 168 (64.2 bits), Expect = 1.1e-24, Sum P(2) = 1.1e-24
Identities = 38/116 (32%), Positives = 69/116 (59%)
Query: 183 LETNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKESLYNAVENGLTAEQ----- 237
LETNFR+YAY+++ L IL LF+ ++ + ++ G +++ S+ A+ +G+TA+Q
Sbjct: 330 LETNFRIYAYTSTPLQIAILALFANLKMRFAGMVTGQLSRHSIKRAISHGITADQIIEYL 389
Query: 238 -QNAHPRV----ADRIPSVLE-NVCDQIRLWESDLNRVEMTPAHYYDEFPSREDSK 287
+AH ++ A R VL V DQIRLW+ + R+++ + + +F S+ + K
Sbjct: 390 ASHAHEQMHRIAAIRNKPVLPPTVVDQIRLWQLETERMQVQRGYLFKDFESQAEFK 445
>DICTYBASE|DDB_G0293228 [details] [associations]
symbol:gtf2h4 "TFIIH subunit" species:44689
"Dictyostelium discoideum" [GO:0006289 "nucleotide-excision repair"
evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=IEA] [GO:0004003
"ATP-dependent DNA helicase activity" evidence=IEA] [GO:0000439
"core TFIIH complex" evidence=IEA] [GO:0006366 "transcription from
RNA polymerase II promoter" evidence=ISS] [GO:0005675 "holo TFIIH
complex" evidence=ISS] [GO:0006974 "response to DNA damage
stimulus" evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006281 "DNA repair" evidence=IEA]
[GO:0044351 "macropinocytosis" evidence=RCA] InterPro:IPR004598
Pfam:PF03849 dictyBase:DDB_G0293228 GenomeReviews:CM000155_GR
GO:GO:0006355 EMBL:AAFI02000200 GO:GO:0006366 GO:GO:0006289
GO:GO:0005675 RefSeq:XP_629237.1 ProteinModelPortal:Q54C29
STRING:Q54C29 PRIDE:Q54C29 EnsemblProtists:DDB0231037
GeneID:8629119 KEGG:ddi:DDB_G0293228 eggNOG:COG5144 KO:K03144
OMA:PVNCLPI ProtClustDB:CLSZ2728699 PANTHER:PTHR13152
Uniprot:Q54C29
Length = 483
Score = 232 (86.7 bits), Expect = 9.7e-19, P = 9.7e-19
Identities = 69/206 (33%), Positives = 109/206 (52%)
Query: 87 FQFLLMDTNAQLWYIVREYISNSQHDSMLAYERGINQADLISFLLELS--FHVAGEAYNL 144
F F L N Y+V E +S Q + + A + Q LI + S F+ +L
Sbjct: 250 FLFRLSFLNLGRGYLVSE-LSEQQKEYLFA----LKQFGLIYMRTDSSILFYPTRLIISL 304
Query: 145 KTLSEIQRSMIKDFADLGLVKLQQGRKESWFIPTIADSLETNFRMYAYSTSKLHCEILRL 204
T + S+I+ + + Q +KE +I LETN+R+YAY++S L +L L
Sbjct: 305 TTGKTL--SLIQSISS----ERTQTQKEQGYIV-----LETNYRLYAYTSSSLQISLLSL 353
Query: 205 FSKIEYQLPNLIVGAITKESLYNAVENGLTAEQ------QNAHPRVADRIPSVLENVCDQ 258
F K+ Y+LPNL VG IT+ES+ A+ +G+TA+Q N+HP A+ + + V +Q
Sbjct: 354 FVKMLYRLPNLAVGIITRESIRTALIHGITADQIIDFVRHNSHPNAANSGQPIPDVVAEQ 413
Query: 259 IRLWESDLNRVEMTPAHYYDEFPSRE 284
I LWE++ NR+ T + Y+ FP+ +
Sbjct: 414 ILLWEAERNRITYTKSVLYNSFPTND 439
Score = 147 (56.8 bits), Expect = 1.8e-07, P = 1.8e-07
Identities = 45/161 (27%), Positives = 79/161 (49%)
Query: 27 PTLEDLEAYAIGQWERFLLQLIS-SAQAERSINFCSSTMKVFQRGLLIQRDKEAPRLTES 85
P+++DL++Y+ QWE+ L L + Q + I+ ++ L +++ + +T
Sbjct: 156 PSIDDLDSYSKSQWEKVLYFLSDDTVQPSKLIS------ELLLSSNLTKQEGDGLSITSE 209
Query: 86 GFQFLLMDTNAQLWYIVREYISNSQHDSMLAYERGINQADLISFLLELSFHVAGEAYNLK 145
GF+FLL D Q+W ++ Y+ + + G ++ DL+SFL LSF G Y +
Sbjct: 210 GFKFLLKDVYTQIWTLLIVYLDDLEKKK--GKGSG-SRNDLLSFLFRLSFLNLGRGYLVS 266
Query: 146 TLSEIQRSMIKDFADLGLVKLQQGRKESWFIPT-IADSLET 185
LSE Q+ + GL+ ++ F PT + SL T
Sbjct: 267 ELSEQQKEYLFALKQFGLIYMRTD-SSILFYPTRLIISLTT 306
>CGD|CAL0002355 [details] [associations]
symbol:orf19.5846 species:5476 "Candida albicans" [GO:0005675
"holo TFIIH complex" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0000439 "core TFIIH complex" evidence=IEA]
[GO:0000112 "nucleotide-excision repair factor 3 complex"
evidence=IEA] [GO:0003690 "double-stranded DNA binding"
evidence=IEA] [GO:0070816 "phosphorylation of RNA polymerase II
C-terminal domain" evidence=IEA] [GO:0006366 "transcription from
RNA polymerase II promoter" evidence=IEA] [GO:0006289
"nucleotide-excision repair" evidence=IEA] InterPro:IPR004598
Pfam:PF03849 CGD:CAL0002355 GO:GO:0005634 GO:GO:0006355
GO:GO:0006281 EMBL:AACQ01000235 EMBL:AACQ01000236 eggNOG:COG5144
KO:K03144 PANTHER:PTHR13152 HOGENOM:HOG000170529 TIGRFAMs:TIGR00625
RefSeq:XP_710801.1 RefSeq:XP_710812.1 STRING:Q59M53 GeneID:3647581
GeneID:3647592 KEGG:cal:CaO19.13268 KEGG:cal:CaO19.5846
Uniprot:Q59M53
Length = 494
Score = 186 (70.5 bits), Expect = 2.4e-15, Sum P(2) = 2.4e-15
Identities = 57/202 (28%), Positives = 102/202 (50%)
Query: 32 LEAYAIGQWERFLLQLISSAQAERSINFCSSTMKVFQRGLLIQRDKEAPRLTESGFQFLL 91
L+ +A +WE L ++ + E + S + + + G L++ R+T SGFQFLL
Sbjct: 136 LDLFASQKWETILHFMVGT---ESTATPSDSVLSLLKLGGLMEGPNNDLRITNSGFQFLL 192
Query: 92 MDTNAQLWYIVREYISNSQHDSMLAYERGINQADLISFLLELSFHVAGEAYNLKTLSEIQ 151
D NAQ+W ++ +Y++ +Q E ++ D+++F+ L G++Y++ +LSE Q
Sbjct: 193 QDVNAQIWTLLLQYLNLTQ-------ELNMDPVDVLNFIFVLGSLELGKSYSVLSLSETQ 245
Query: 152 RSMIKDFADLGLVKLQQGRKESWFIPT-IADSLETNFRMYAYSTSKLHCEILRLFSKIEY 210
SM+ D D GLV Q+ F PT +A +L ++ + + E ++ +K
Sbjct: 246 VSMLADLKDYGLV-YQRSDTSGRFYPTRLATTLTSDSAALKTPSMAMDEEEQQVATKESI 304
Query: 211 QLP-NLIVGAITKESLYNAVEN 231
+ N + A TK L A+ N
Sbjct: 305 IIETNFKIYAYTKSPLEIAILN 326
Score = 141 (54.7 bits), Expect = 7.0e-10, Sum P(2) = 7.0e-10
Identities = 33/103 (32%), Positives = 56/103 (54%)
Query: 148 SEIQRSMIKDFADLGLVKLQQGRKESWFIPTIADSLETNFRMYAYSTSKLHCEILRLFSK 207
+ + ++ D A L + +E + +ETNF++YAY+ S L IL LF
Sbjct: 271 TRLATTLTSDSAALKTPSMAMDEEEQQVATKESIIIETNFKIYAYTKSPLEIAILNLFVH 330
Query: 208 IEYQLPNLIVGAITKESLYNAVENGLTAEQ------QNAHPRV 244
+ + N++ G IT+ES+ NA+ NG+TA+Q +AHP++
Sbjct: 331 FKTRFANMVCGQITRESIRNALYNGITADQIIKFLETHAHPQM 373
Score = 70 (29.7 bits), Expect = 2.4e-15, Sum P(2) = 2.4e-15
Identities = 10/32 (31%), Positives = 23/32 (71%)
Query: 254 NVCDQIRLWESDLNRVEMTPAHYYDEFPSRED 285
NV DQI+LW+ +L+R++ + + +F ++++
Sbjct: 419 NVVDQIKLWQLELDRIQTFDGYLFKDFSNQQE 450
>UNIPROTKB|B4DTJ5 [details] [associations]
symbol:GTF2H4 "cDNA FLJ50212, highly similar to TFIIH basal
transcription factor complex p52 subunit" species:9606 "Homo
sapiens" [GO:0000439 "core TFIIH complex" evidence=IEA] [GO:0004003
"ATP-dependent DNA helicase activity" evidence=IEA] [GO:0006289
"nucleotide-excision repair" evidence=IEA] InterPro:IPR004598
Pfam:PF03849 GO:GO:0005634 GO:GO:0006355 GO:GO:0006281
EMBL:CR759747 EMBL:AL662854 EMBL:AL662870 EMBL:AL773541
EMBL:BX927194 EMBL:AL669830 EMBL:CR936875 PANTHER:PTHR13152
UniGene:Hs.485070 HGNC:HGNC:4658 TIGRFAMs:TIGR00625 EMBL:AK300239
IPI:IPI01015708 STRING:B4DTJ5 Ensembl:ENST00000539324
Ensembl:ENST00000547731 Ensembl:ENST00000549684
Ensembl:ENST00000551614 Ensembl:ENST00000551657
Ensembl:ENST00000552174 UCSC:uc011dmv.1 Uniprot:B4DTJ5
Length = 220
Score = 186 (70.5 bits), Expect = 2.5e-14, P = 2.5e-14
Identities = 51/165 (30%), Positives = 85/165 (51%)
Query: 2 NLWKHLINGG-ALPREPMPSGITARLPTLEDLEAYAIGQWERFLLQLISSAQAERSINFC 60
NL L+ GG A + G + L+ YA +WE L ++ S A S +
Sbjct: 61 NLRIALLGGGKAWSDDTSQLGPDKHARDVPSLDKYAEERWEVVLHFMVGSPSAAVSQDLA 120
Query: 61 SSTMKVFQRGLLIQRDK-EAPRLTESGFQFLLMDTNAQLWYIVREYISNSQHDSMLAYER 119
+ Q GL+ + E P +T +GFQFLL+DT AQLWY + +Y+ +Q R
Sbjct: 121 QL---LSQAGLMKSTEPGEPPCITSAGFQFLLLDTPAQLWYFMLQYLQTAQ-------SR 170
Query: 120 GINQADLISFLLELSFHVAGEAYNLKTLSEIQRSMIKDFADLGLV 164
G++ +++SFL +LSF G+ Y+++ +S+ + ++ + GLV
Sbjct: 171 GMDLVEILSFLFQLSFSTLGKDYSVEGMSDSLLNFLQHLREFGLV 215
>WB|WBGene00013529 [details] [associations]
symbol:Y73F8A.24 species:6239 "Caenorhabditis elegans"
[GO:0005634 "nucleus" evidence=IEA] [GO:0006281 "DNA repair"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0000003 "reproduction"
evidence=IMP] [GO:0040035 "hermaphrodite genitalia development"
evidence=IMP] [GO:0009792 "embryo development ending in birth or
egg hatching" evidence=IMP] InterPro:IPR004598 Pfam:PF03849
GO:GO:0005634 GO:GO:0009792 GO:GO:0006355 GO:GO:0006281
GO:GO:0040035 EMBL:AL132862 eggNOG:COG5144 KO:K03144 OMA:PVNCLPI
PANTHER:PTHR13152 GeneTree:ENSGT00390000014159 GeneID:178431
KEGG:cel:CELE_Y73F8A.24 CTD:178431 RefSeq:NP_001255863.1
ProteinModelPortal:Q9NA35 SMR:Q9NA35 STRING:Q9NA35 PaxDb:Q9NA35
EnsemblMetazoa:Y73F8A.24a UCSC:Y73F8A.24 WormBase:Y73F8A.24a
HOGENOM:HOG000020092 InParanoid:Q9NA35 NextBio:901110
ArrayExpress:Q9NA35 Uniprot:Q9NA35
Length = 481
Score = 200 (75.5 bits), Expect = 1.1e-13, P = 1.1e-13
Identities = 45/112 (40%), Positives = 71/112 (63%)
Query: 183 LETNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKESLYNAVENGLTAEQ----- 237
+ETNFR+YAY++S L I+ LF+++ Y+ ++ VG IT+ES+ A+++G+TA Q
Sbjct: 312 VETNFRVYAYTSSLLQLAIIALFTEMTYRFQDMSVGMITRESVRGALQHGITAAQIISFL 371
Query: 238 -QNAHPR-VADRIP-SVLE-NVCDQIRLWESDLNRVEMTPAHYYDEFPSRED 285
NAHP+ +A P + L V DQIRLWE + R+ + A+ Y F S ++
Sbjct: 372 RANAHPQCIATSGPVNCLPITVADQIRLWEDERRRMNLKDAYIYSHFESEDE 423
Score = 118 (46.6 bits), Expect = 0.00033, P = 0.00033
Identities = 60/284 (21%), Positives = 117/284 (41%)
Query: 30 EDLEAYAIGQWERFLLQLISSAQAERSINFCSSTMKVFQRGLLIQRDKEAPRLTESGFQF 89
+D+E A+ +W+ +L+ ++ E + +T +F++ +T GFQF
Sbjct: 139 KDVEKKAVERWD-CILRYLALPSEENTQAVSETTRNLFKKANFTSGGDTQIEITTFGFQF 197
Query: 90 LLMDTNAQLWYIVREYISNSQHDSMLAYERGINQADLISFLLELSFHVAGEAYNLKT-LS 148
LL+ Q+W V EY+ E I I L F E Y + +
Sbjct: 198 LLLSPVKQMWTYVIEYLKLEMSQGQDIVEV-IEPLIQIVLLANRGFKAERECYQIDANWT 256
Query: 149 EIQRSMIKDFADLGLVKLQQGRKESWFIPTIADSLETNFRMYAYSTSKL-HCEIL----- 202
E Q ++ +LG++ +++ + +F+ + L TN + S K+ + +++
Sbjct: 257 EPQNELLNHLRELGVIFIRKRKDGVFFLTQLLTHLATNETIDDVSAEKVSNGKVIVETNF 316
Query: 203 RLFSKIEYQLPNLIVGAITKESL-YNAVENGL-TAEQQNA---HPRVADRIPSVLE-NVC 256
R+++ L I+ T+ + + + G+ T E H A +I S L N
Sbjct: 317 RVYAYTSSLLQLAIIALFTEMTYRFQDMSVGMITRESVRGALQHGITAAQIISFLRANAH 376
Query: 257 DQIRLWESDLNRVEMTPAHYYDEFPSREDSKKMRLVVNAEIHMH 300
Q +N + +T A D+ ED ++ + +A I+ H
Sbjct: 377 PQCIATSGPVNCLPITVA---DQIRLWEDERRRMNLKDAYIYSH 417
>SGD|S000006043 [details] [associations]
symbol:TFB2 "Subunit of TFIIH and nucleotide excision repair
factor 3 complexes" species:4932 "Saccharomyces cerevisiae"
[GO:0005634 "nucleus" evidence=IEA] [GO:0006289
"nucleotide-excision repair" evidence=IEA;IMP] [GO:0006974
"response to DNA damage stimulus" evidence=IEA] [GO:0000990 "core
RNA polymerase binding transcription factor activity" evidence=IC]
[GO:0000439 "core TFIIH complex" evidence=IEA;IDA] [GO:0004003
"ATP-dependent DNA helicase activity" evidence=IEA] [GO:0006281
"DNA repair" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0006366
"transcription from RNA polymerase II promoter" evidence=IDA]
[GO:0070816 "phosphorylation of RNA polymerase II C-terminal
domain" evidence=IDA] [GO:0005675 "holo TFIIH complex"
evidence=IDA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0000112 "nucleotide-excision repair factor 3
complex" evidence=IPI] [GO:0003690 "double-stranded DNA binding"
evidence=IDA] InterPro:IPR004598 Pfam:PF03849 SGD:S000006043
GO:GO:0006366 EMBL:BK006949 GO:GO:0003690 EMBL:U43503 GO:GO:0006289
GO:GO:0070816 GO:GO:0005675 GO:GO:0000439 GO:GO:0000112
eggNOG:COG5144 KO:K03144 PANTHER:PTHR13152 HOGENOM:HOG000170529
OMA:CVLHYMV TIGRFAMs:TIGR00625 GeneTree:ENSGT00390000014159
OrthoDB:EOG4CZFQD EMBL:U62804 PIR:S62000 RefSeq:NP_015203.1
PDB:3DGP PDB:3DOM PDBsum:3DGP PDBsum:3DOM ProteinModelPortal:Q02939
SMR:Q02939 DIP:DIP-5783N IntAct:Q02939 MINT:MINT-2785444
STRING:Q02939 PaxDb:Q02939 PeptideAtlas:Q02939 EnsemblFungi:YPL122C
GeneID:855981 KEGG:sce:YPL122C CYGD:YPL122c
EvolutionaryTrace:Q02939 NextBio:980816 Genevestigator:Q02939
GermOnline:YPL122C Uniprot:Q02939
Length = 513
Score = 166 (63.5 bits), Expect = 3.6e-12, Sum P(2) = 3.6e-12
Identities = 48/178 (26%), Positives = 84/178 (47%)
Query: 28 TLEDLEAYAIGQWERFLLQLISSAQAERSINFCSSTMKVFQRGLLIQRDKEAP--RLTES 85
+L+ L+ Y+ +WE L ++ + A+ + + + L++ ++T
Sbjct: 131 SLDLLDEYSANKWETILHFMVGTPLAKIP---SEKVLNLLKHSKLMEEVNSTGEFKITNE 187
Query: 86 GFQFLLMDTNAQLWYIVREYISNSQHDSMLAYERGINQADLISFLLELSFHVAGEAYNLK 145
GFQFLL + N+QLW ++ +Y+ + M + D++ F+ L G+AY +
Sbjct: 188 GFQFLLQEINSQLWTLLLQYLKMIETSKM-------DLVDVLHFIFMLGALEVGKAYKID 240
Query: 146 TLSEIQRSMIKDFADLGLVKLQQGRKESWFIPTIADSLETNFRMYAYSTSKLHCEILR 203
LSE QR M++D D GLV Q+ +S F PT + T+ S S +LR
Sbjct: 241 ALSETQRIMLQDMRDYGLV-FQKHSNDSIFYPTKLALMLTSDTKTIRSASNAMDSVLR 297
Score = 137 (53.3 bits), Expect = 9.7e-09, Sum P(2) = 9.7e-09
Identities = 29/75 (38%), Positives = 49/75 (65%)
Query: 176 IPTIADSLETNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKESLYNAVENGLTA 235
IP + +ETNF++Y+YS S L +L LF ++ + N+++G IT+ES+ A+ NG+TA
Sbjct: 334 IPDGSLIVETNFKIYSYSNSPLQIAVLSLFVHLKARFVNMVLGQITRESIRRALTNGITA 393
Query: 236 EQ------QNAHPRV 244
+Q +AHP++
Sbjct: 394 DQIIAYLETHAHPQM 408
Score = 64 (27.6 bits), Expect = 3.6e-12, Sum P(2) = 3.6e-12
Identities = 13/44 (29%), Positives = 23/44 (52%)
Query: 242 PRVADRIPSVLENVCDQIRLWESDLNRVEMTPAHYYDEFPSRED 285
P + + + V DQIRLW+ +L+RV Y +F + ++
Sbjct: 424 PNCKEPLQVLPPTVVDQIRLWQLELDRVITYEGSLYSDFETSQE 467
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.320 0.134 0.391 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 310 310 0.00079 116 3 11 22 0.37 34
33 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 17
No. of states in DFA: 604 (64 KB)
Total size of DFA: 222 KB (2123 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 24.02u 0.11s 24.13t Elapsed: 00:00:01
Total cpu time: 24.02u 0.11s 24.13t Elapsed: 00:00:01
Start: Fri May 10 08:03:38 2013 End: Fri May 10 08:03:39 2013