BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 040211
(310 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|147854406|emb|CAN81292.1| hypothetical protein VITISV_005315 [Vitis vinifera]
Length = 451
Score = 481 bits (1239), Expect = e-133, Method: Compositional matrix adjust.
Identities = 243/348 (69%), Positives = 271/348 (77%), Gaps = 49/348 (14%)
Query: 1 SNLWKHLINGGALPREPMPSGITARLPTLEDLEAYAIGQWERFLLQLISSAQAERSINFC 60
+NL KHLI GG LPREPMPS IT RLP+L+DLEAYA+GQWE FLLQLISS Q E+ NF
Sbjct: 108 TNLQKHLIYGGVLPREPMPSNITVRLPSLDDLEAYALGQWECFLLQLISSTQTEKLTNFS 167
Query: 61 SSTMKVFQRGLLIQRDKEAPRLTESGFQFLLMDTNAQLWYIVREYISNSQHDSMLAYERG 120
SS MKVFQRGLL QR+KEAPRLTESGFQFLLMDTNAQLWYI+REYISNS+ ERG
Sbjct: 168 SSLMKVFQRGLLTQREKEAPRLTESGFQFLLMDTNAQLWYIMREYISNSE-------ERG 220
Query: 121 INQADLISFLLELSFHVAGEAYNLKTLSEIQRSMIKDFADLGLVKLQQGRKESWFIPT-- 178
++ ADLISFLLELSFHV GEAYN+ TL+E QR+ IKD DLGLVKLQQGRKESWFIPT
Sbjct: 221 VDPADLISFLLELSFHVTGEAYNINTLTEFQRNTIKDLVDLGLVKLQQGRKESWFIPTKL 280
Query: 179 -------IADS---------LETNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITK 222
++D+ +ETNFR+YAYS+SKLHCEILRLFS++EYQLPNLIVGAITK
Sbjct: 281 ATNLSMSLSDTSSRKQGFVVVETNFRLYAYSSSKLHCEILRLFSRVEYQLPNLIVGAITK 340
Query: 223 ESLYNAVENGLTAE------QQNAHPRVADRIPSVLENVCDQIRLWESDLNRVEMTPAHY 276
ESLYNA ENG+TAE QQNAHPRVA+R P+V ENV DQIRLWE+DLNRVE P+H
Sbjct: 341 ESLYNAFENGITAEQIISFLQQNAHPRVAERTPAVPENVTDQIRLWETDLNRVETMPSHL 400
Query: 277 YDEFPSR------------------EDSKKMRLVVNAEIHMHMREFLR 306
YDEFPSR EDSKKMRLVV AEIH+HMRE+LR
Sbjct: 401 YDEFPSRDVFEAACDFAREYGGLLWEDSKKMRLVVKAEIHLHMREYLR 448
>gi|255556021|ref|XP_002519045.1| tfiih, polypeptide, putative [Ricinus communis]
gi|223541708|gb|EEF43256.1| tfiih, polypeptide, putative [Ricinus communis]
Length = 451
Score = 480 bits (1235), Expect = e-133, Method: Compositional matrix adjust.
Identities = 241/350 (68%), Positives = 273/350 (78%), Gaps = 49/350 (14%)
Query: 1 SNLWKHLINGGALPREPMPSGITARLPTLEDLEAYAIGQWERFLLQLISSAQAERSINFC 60
+NL KHLI+GG LP EP+ S I RLPTLE+L+ YA+GQWE FLL LI+S AERS NF
Sbjct: 108 TNLQKHLIDGGVLPGEPLASNIAVRLPTLEELDTYALGQWECFLLHLINSGHAERSTNFS 167
Query: 61 SSTMKVFQRGLLIQRDKEAPRLTESGFQFLLMDTNAQLWYIVREYISNSQHDSMLAYERG 120
SS MK+FQRGLL QRDKEAPRLTESGFQFLLMDTNAQLWYI+REYISNS+ ERG
Sbjct: 168 SSMMKIFQRGLLTQRDKEAPRLTESGFQFLLMDTNAQLWYIIREYISNSE-------ERG 220
Query: 121 INQADLISFLLELSFHVAGEAYNLKTLSEIQRSMIKDFADLGLVKLQQGRKESWFIPT-- 178
++ ADLISFLLELSFH+ GEAYN+ L+E QR+MIKD ADLGLVKLQQGRKESWFIPT
Sbjct: 221 LDSADLISFLLELSFHITGEAYNMIMLTEFQRNMIKDLADLGLVKLQQGRKESWFIPTKL 280
Query: 179 -------IADS---------LETNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITK 222
+ DS +ETNFRMYAYSTSKLHCEI+RLFS++EYQLPNL+VGA+TK
Sbjct: 281 ATNLSMSLTDSSSRKQGFVVVETNFRMYAYSTSKLHCEIMRLFSRVEYQLPNLVVGAMTK 340
Query: 223 ESLYNAVENGLTAE------QQNAHPRVADRIPSVLENVCDQIRLWESDLNRVEMTPAHY 276
ESLY+A ENG+TAE QQNAHPRVA+RIPSV ENV DQIRLWESD+NRVEMTPAH
Sbjct: 341 ESLYSAFENGITAEQIISFLQQNAHPRVAERIPSVPENVTDQIRLWESDMNRVEMTPAHL 400
Query: 277 YDEFPSR------------------EDSKKMRLVVNAEIHMHMREFLRGQ 308
YDEFPSR EDSK+MR+VV AEIH++MRE+LRGQ
Sbjct: 401 YDEFPSRDVFEAACNFARDWNGLLWEDSKRMRMVVKAEIHLNMREYLRGQ 450
>gi|449433857|ref|XP_004134713.1| PREDICTED: general transcription factor IIH subunit 4-like [Cucumis
sativus]
Length = 451
Score = 469 bits (1206), Expect = e-130, Method: Compositional matrix adjust.
Identities = 243/350 (69%), Positives = 270/350 (77%), Gaps = 49/350 (14%)
Query: 1 SNLWKHLINGGALPREPMPSGITARLPTLEDLEAYAIGQWERFLLQLISSAQAERSINFC 60
+NL K LI+G L REPMPS IT RLP+LEDLEAYA+ QWE FLLQLI+S QAE+ N
Sbjct: 108 ANLQKLLIHGEVLAREPMPSNITVRLPSLEDLEAYALDQWECFLLQLINSGQAEKPSNIS 167
Query: 61 SSTMKVFQRGLLIQRDKEAPRLTESGFQFLLMDTNAQLWYIVREYISNSQHDSMLAYERG 120
SS MKVFQ+GLL QRDKEAPRLTESGFQFLLM+TNAQLWYI+REYISN++ ERG
Sbjct: 168 SSVMKVFQKGLLSQRDKEAPRLTESGFQFLLMETNAQLWYIIREYISNAE-------ERG 220
Query: 121 INQADLISFLLELSFHVAGEAYNLKTLSEIQRSMIKDFADLGLVKLQQGRKESWFIPT-- 178
++ ADLISFLLELSFHV GEAY++ TLS+ QR IKD ADLGLVKLQQGRKESWFIPT
Sbjct: 221 VDPADLISFLLELSFHVTGEAYDIDTLSDEQRYAIKDLADLGLVKLQQGRKESWFIPTKL 280
Query: 179 -------IADS---------LETNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITK 222
+ADS +ETNFRMYAYSTSKLHCEILRLFS+IEYQLPNLIVGAITK
Sbjct: 281 ATNLSMSLADSSSRKLGFVVVETNFRMYAYSTSKLHCEILRLFSRIEYQLPNLIVGAITK 340
Query: 223 ESLYNAVENGLTAE------QQNAHPRVADRIPSVLENVCDQIRLWESDLNRVEMTPAHY 276
ESLYNA +NG+TAE QQNAHPRVA+RIPSV ENV DQIRLWESDLNRV++TPAH+
Sbjct: 341 ESLYNAFKNGITAEQIVTFLQQNAHPRVAERIPSVPENVTDQIRLWESDLNRVDITPAHF 400
Query: 277 YDEFPSR------------------EDSKKMRLVVNAEIHMHMREFLRGQ 308
YDEFPSR EDSK +RLVV A+IH HMRE LR Q
Sbjct: 401 YDEFPSREVFEAACDYAREWNGLLWEDSKNLRLVVKADIHTHMREHLRRQ 450
>gi|224077128|ref|XP_002305144.1| predicted protein [Populus trichocarpa]
gi|222848108|gb|EEE85655.1| predicted protein [Populus trichocarpa]
Length = 449
Score = 456 bits (1172), Expect = e-126, Method: Compositional matrix adjust.
Identities = 233/350 (66%), Positives = 268/350 (76%), Gaps = 51/350 (14%)
Query: 1 SNLWKHLINGGALPREPMPSGITARLPTLEDLEAYAIGQWERFLLQLISSAQAERSINFC 60
+NL KHL NGG LPRE M + + +LP+LE+L+ YA+ QWE FLL LISS QAE+ +
Sbjct: 108 ANLRKHLTNGGVLPRETMAAVV--KLPSLEELDTYALEQWECFLLLLISSGQAEKPTSLS 165
Query: 61 SSTMKVFQRGLLIQRDKEAPRLTESGFQFLLMDTNAQLWYIVREYISNSQHDSMLAYERG 120
SS MK+FQRGLL QRD++APRLTE GFQFLLMDTNAQLWYI+REYI+NS+ ERG
Sbjct: 166 SSMMKIFQRGLLSQRDRDAPRLTEGGFQFLLMDTNAQLWYIIREYITNSE-------ERG 218
Query: 121 INQADLISFLLELSFHVAGEAYNLKTLSEIQRSMIKDFADLGLVKLQQGRKESWFIPT-- 178
ADLISFLLELSFHV GEAYN+ TL+EIQR+ IKD A+LGLVKLQQGRKESWFIPT
Sbjct: 219 TEPADLISFLLELSFHVTGEAYNMNTLTEIQRNTIKDLAELGLVKLQQGRKESWFIPTKL 278
Query: 179 -------IADS---------LETNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITK 222
+ DS +ETNFR+YAYS+SKLHCEILRLFSKIEYQLPNLIVGAITK
Sbjct: 279 ATNLSVSLTDSSSRKQGYVVVETNFRLYAYSSSKLHCEILRLFSKIEYQLPNLIVGAITK 338
Query: 223 ESLYNAVENGLTAE------QQNAHPRVADRIPSVLENVCDQIRLWESDLNRVEMTPAHY 276
ESLY A ENG+T++ QQNAHPRVA+R+PSV ENV DQIRLWE+DLNRVE+TP+H+
Sbjct: 339 ESLYTAFENGITSDQIISFLQQNAHPRVAERLPSVPENVTDQIRLWEADLNRVEITPSHF 398
Query: 277 YDEFPSR------------------EDSKKMRLVVNAEIHMHMREFLRGQ 308
YDEFPSR EDSKKMR+VV AEIHM+MREFLRGQ
Sbjct: 399 YDEFPSRDTFEAACDFAREWNGLLWEDSKKMRVVVKAEIHMNMREFLRGQ 448
>gi|358346685|ref|XP_003637396.1| General transcription factor IIH subunit [Medicago truncatula]
gi|355503331|gb|AES84534.1| General transcription factor IIH subunit [Medicago truncatula]
Length = 451
Score = 453 bits (1165), Expect = e-125, Method: Compositional matrix adjust.
Identities = 231/349 (66%), Positives = 267/349 (76%), Gaps = 49/349 (14%)
Query: 2 NLWKHLINGGALPREPMPSGITARLPTLEDLEAYAIGQWERFLLQLISSAQAERSINFCS 61
+L K L++GG LPRE MPS IT RLPTLEDLE YA+ QWE FLLQLIS + ++++N S
Sbjct: 109 SLQKLLVHGGTLPRESMPSNITVRLPTLEDLETYALEQWECFLLQLISPSHVDKTLNISS 168
Query: 62 STMKVFQRGLLIQRDKEAPRLTESGFQFLLMDTNAQLWYIVREYISNSQHDSMLAYERGI 121
S MKVFQR LL QRD+EAP+LTESGFQFLLMDTNAQLWYI+REYI+NS+ ERG+
Sbjct: 169 SLMKVFQRRLLSQRDREAPKLTESGFQFLLMDTNAQLWYIIREYITNSE-------ERGV 221
Query: 122 NQADLISFLLELSFHVAGEAYNLKTLSEIQRSMIKDFADLGLVKLQQGRKESWFIPT-IA 180
+ DLISF+LELSFHV GEAYN+ TL+E QR++IKD ADLGLVKLQQGRKESWFIPT +A
Sbjct: 222 DAGDLISFMLELSFHVIGEAYNINTLTEFQRNIIKDLADLGLVKLQQGRKESWFIPTKLA 281
Query: 181 DSL-----------------ETNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKE 223
+L ETNFR+YAYSTSKLHCEILRLFS++EYQLPNLIVGAITKE
Sbjct: 282 TNLSVSMTESSSRKEGFVVVETNFRVYAYSTSKLHCEILRLFSRVEYQLPNLIVGAITKE 341
Query: 224 SLYNAVENGLTAEQ------QNAHPRVADRIPSVLENVCDQIRLWESDLNRVEMTPAHYY 277
SLYNA +NG+TA+Q QNAHPRVA RIP+V ENV DQIRLWESDLNRVEMT A+YY
Sbjct: 342 SLYNAFDNGITADQIVSFFRQNAHPRVAQRIPAVPENVTDQIRLWESDLNRVEMTEAYYY 401
Query: 278 DEFPSR------------------EDSKKMRLVVNAEIHMHMREFLRGQ 308
DEFPSR EDSKKM LVV +E+H ++R+FLR Q
Sbjct: 402 DEFPSRDVFEGACDCAREWSGLLWEDSKKMHLVVKSEVHTYVRDFLRRQ 450
>gi|357461579|ref|XP_003601071.1| General transcription factor IIH subunit [Medicago truncatula]
gi|355490119|gb|AES71322.1| General transcription factor IIH subunit [Medicago truncatula]
Length = 452
Score = 451 bits (1160), Expect = e-124, Method: Compositional matrix adjust.
Identities = 228/344 (66%), Positives = 264/344 (76%), Gaps = 49/344 (14%)
Query: 7 LINGGALPREPMPSGITARLPTLEDLEAYAIGQWERFLLQLISSAQAERSINFCSSTMKV 66
L++GG LPRE MPS IT RLPTLEDLE YA+ QWE FLLQLIS + ++++N SS MKV
Sbjct: 115 LVHGGTLPRESMPSNITVRLPTLEDLETYALEQWECFLLQLISPSHVDKTLNISSSLMKV 174
Query: 67 FQRGLLIQRDKEAPRLTESGFQFLLMDTNAQLWYIVREYISNSQHDSMLAYERGINQADL 126
FQR LL QRD+EAP+LTESGFQFLLMDTNAQLWYI+REYI+NS+ ERG++ DL
Sbjct: 175 FQRRLLSQRDREAPKLTESGFQFLLMDTNAQLWYIIREYITNSE-------ERGVDAGDL 227
Query: 127 ISFLLELSFHVAGEAYNLKTLSEIQRSMIKDFADLGLVKLQQGRKESWFIPT-IADSL-- 183
ISF+LELSFHV GEAYN+ TL+E QR++IKD ADLGLVKLQQGRKESWFIPT +A +L
Sbjct: 228 ISFMLELSFHVIGEAYNINTLTEFQRNIIKDLADLGLVKLQQGRKESWFIPTKLATNLSV 287
Query: 184 ---------------ETNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKESLYNA 228
ETNFR+YAYSTSKLHCEILRLFS++EYQLPNLIVGAITKESLYNA
Sbjct: 288 SMTESSSRKEGFVVVETNFRVYAYSTSKLHCEILRLFSRVEYQLPNLIVGAITKESLYNA 347
Query: 229 VENGLTAEQ------QNAHPRVADRIPSVLENVCDQIRLWESDLNRVEMTPAHYYDEFPS 282
+NG+TA+Q QNAHPRVA R+P+V ENV DQIRLWESDLNRVEMT A+YYDEFPS
Sbjct: 348 FDNGITADQIVSFLRQNAHPRVAQRVPAVPENVTDQIRLWESDLNRVEMTEAYYYDEFPS 407
Query: 283 R------------------EDSKKMRLVVNAEIHMHMREFLRGQ 308
R EDSKKM LVV +E+H ++R+FLR Q
Sbjct: 408 RDVFEGACDCAREWSGLLWEDSKKMHLVVKSEVHTYVRDFLRRQ 451
>gi|356521347|ref|XP_003529318.1| PREDICTED: general transcription factor IIH subunit 4-like [Glycine
max]
Length = 451
Score = 442 bits (1137), Expect = e-121, Method: Compositional matrix adjust.
Identities = 225/350 (64%), Positives = 264/350 (75%), Gaps = 49/350 (14%)
Query: 2 NLWKHLINGGALPREPMPSGITARLPTLEDLEAYAIGQWERFLLQLISSAQAERSINFCS 61
+L K L+ GG LPRE MPS IT RLPTLE+LEAYA+ QWE FLLQLIS +Q E+ +N S
Sbjct: 109 SLQKLLVQGGTLPRESMPSNITVRLPTLENLEAYALEQWECFLLQLISPSQVEKPLNISS 168
Query: 62 STMKVFQRGLLIQRDKEAPRLTESGFQFLLMDTNAQLWYIVREYISNSQHDSMLAYERGI 121
S MKVFQR +L RDKEAP+LTESGFQFLLMDTNAQLWYI+REYISNS+ +RG+
Sbjct: 169 SLMKVFQRRILSHRDKEAPKLTESGFQFLLMDTNAQLWYIIREYISNSE-------DRGV 221
Query: 122 NQADLISFLLELSFHVAGEAYNLKTLSEIQRSMIKDFADLGLVKLQQGRKESWFIPT--- 178
+ ADLISF+LELSFHV GEAY++ TL+ QR++I D ADLGLVK+QQGRK SWFIPT
Sbjct: 222 DAADLISFMLELSFHVIGEAYSVDTLTSFQRTIINDLADLGLVKIQQGRKGSWFIPTKLA 281
Query: 179 ------IADS---------LETNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKE 223
+ADS +ETNFR+YAYSTSKLHCEILRLFS++EYQLPNLIVGAITKE
Sbjct: 282 TNLSMSLADSSSRKQGFVVVETNFRVYAYSTSKLHCEILRLFSRVEYQLPNLIVGAITKE 341
Query: 224 SLYNAVENGLTAE------QQNAHPRVADRIPSVLENVCDQIRLWESDLNRVEMTPAHYY 277
SLY+A ENG+TAE QQNAHPRVA+R+PSV ENV +QIRLWE+DLNRVEMT +YY
Sbjct: 342 SLYSAYENGITAEQIVTFLQQNAHPRVAERVPSVPENVTEQIRLWEADLNRVEMTDTYYY 401
Query: 278 DEFPSR------------------EDSKKMRLVVNAEIHMHMREFLRGQN 309
DEFPSR EDSKKM +VV E+H ++R++LR Q
Sbjct: 402 DEFPSRDVFEGACDCAREWNGLLWEDSKKMHMVVKTEVHPYVRDYLRRQK 451
>gi|356548733|ref|XP_003542754.1| PREDICTED: general transcription factor IIH subunit 4-like [Glycine
max]
Length = 451
Score = 441 bits (1134), Expect = e-121, Method: Compositional matrix adjust.
Identities = 226/350 (64%), Positives = 264/350 (75%), Gaps = 49/350 (14%)
Query: 2 NLWKHLINGGALPREPMPSGITARLPTLEDLEAYAIGQWERFLLQLISSAQAERSINFCS 61
+L K L+ GG LPRE MPS IT RLPTLE+LEAYA+ QWE FLLQLIS +Q E+ +N S
Sbjct: 109 SLQKLLVQGGTLPRESMPSNITVRLPTLENLEAYALEQWECFLLQLISPSQVEKPLNISS 168
Query: 62 STMKVFQRGLLIQRDKEAPRLTESGFQFLLMDTNAQLWYIVREYISNSQHDSMLAYERGI 121
S MKVFQR +L RDKEAP+LTESGFQFLLMDTNAQLWYI+REYISNS+ +RG+
Sbjct: 169 SLMKVFQRRILSYRDKEAPKLTESGFQFLLMDTNAQLWYIIREYISNSE-------DRGV 221
Query: 122 NQADLISFLLELSFHVAGEAYNLKTLSEIQRSMIKDFADLGLVKLQQGRKESWFIPT--- 178
+ ADLISF+LELSFH GEAY++ TL+ QR++I D ADLGLVK+QQGRK SWFIPT
Sbjct: 222 DAADLISFMLELSFHDIGEAYSVDTLTSFQRTIINDLADLGLVKIQQGRKGSWFIPTKLA 281
Query: 179 ------IADS---------LETNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKE 223
+ADS +ETNFR+YAYSTSKLHCEILRLFS++EYQLPNLIVGAITKE
Sbjct: 282 TNLSMSLADSSSRKQGFVVVETNFRVYAYSTSKLHCEILRLFSRVEYQLPNLIVGAITKE 341
Query: 224 SLYNAVENGLTAE------QQNAHPRVADRIPSVLENVCDQIRLWESDLNRVEMTPAHYY 277
SLY+A ENG+TAE QQNAHPRVA+RIPSV ENV +QIRLWE+DLNRVEMT A+YY
Sbjct: 342 SLYSAFENGITAEQIITFLQQNAHPRVAERIPSVPENVTEQIRLWEADLNRVEMTDAYYY 401
Query: 278 DEFPSR------------------EDSKKMRLVVNAEIHMHMREFLRGQN 309
DEFPSR EDSKKM +VV E+H ++R++LR Q
Sbjct: 402 DEFPSRDVFEGACDCAREWNGLLWEDSKKMHMVVKTEVHQYVRDYLRRQK 451
>gi|297800414|ref|XP_002868091.1| hypothetical protein ARALYDRAFT_493174 [Arabidopsis lyrata subsp.
lyrata]
gi|297313927|gb|EFH44350.1| hypothetical protein ARALYDRAFT_493174 [Arabidopsis lyrata subsp.
lyrata]
Length = 452
Score = 434 bits (1116), Expect = e-119, Method: Compositional matrix adjust.
Identities = 219/352 (62%), Positives = 259/352 (73%), Gaps = 49/352 (13%)
Query: 1 SNLWKHLINGGALPREPMPSGITARLPTLEDLEAYAIGQWERFLLQLISSAQAERSINFC 60
+NL KH+I+GG LPREPM S +LP+L++LE YA+ QWE FLLQLI+S Q E+
Sbjct: 108 NNLQKHIISGGVLPREPMHSDNAIKLPSLQELETYALKQWECFLLQLINSGQGEKLTGIS 167
Query: 61 SSTMKVFQRGLLIQRDKEAPRLTESGFQFLLMDTNAQLWYIVREYISNSQHDSMLAYERG 120
SS M++FQRGLL QRDK+ PRLTESGFQFLLMDTNAQLWYI+REYISN++ ER
Sbjct: 168 SSMMRIFQRGLLSQRDKDGPRLTESGFQFLLMDTNAQLWYIIREYISNAE-------ERD 220
Query: 121 INQADLISFLLELSFHVAGEAYNLKTLSEIQRSMIKDFADLGLVKLQQGRKESWFIPT-- 178
+ ADLISFLLELSFHV GEAYN TL+E+Q + +KD ADLGLVKLQQGRK+SWFIPT
Sbjct: 221 VEPADLISFLLELSFHVTGEAYNSNTLTEVQNNTLKDLADLGLVKLQQGRKDSWFIPTKL 280
Query: 179 -------IADS---------LETNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITK 222
+ADS +ETNFRMYAYSTSKL CEILRLF++IEYQLPNLI AITK
Sbjct: 281 ATNLSVSLADSSARKEGFVVMETNFRMYAYSTSKLQCEILRLFARIEYQLPNLIACAITK 340
Query: 223 ESLYNAVENGLTAE------QQNAHPRVADRIPSVLENVCDQIRLWESDLNRVEMTPAHY 276
ESLYNA +NG+T++ QQN+HPR ADR+PS+ ENV DQIRLWE+DL R+EMT AH+
Sbjct: 341 ESLYNAFDNGITSDQIITFLQQNSHPRCADRVPSIPENVTDQIRLWETDLKRIEMTQAHF 400
Query: 277 YDEFPSR------------------EDSKKMRLVVNAEIHMHMREFLRGQNK 310
YDEFPS+ EDSK+MRLVV +E+H MREFL Q K
Sbjct: 401 YDEFPSKDVFEAACDFAREWGGLLWEDSKRMRLVVKSEVHNQMREFLHNQTK 452
>gi|42566894|ref|NP_193435.2| transcription initiation factor TFIIH subunit H4 [Arabidopsis
thaliana]
gi|51969678|dbj|BAD43531.1| unnamed protein product [Arabidopsis thaliana]
gi|115646777|gb|ABJ17114.1| At4g17020 [Arabidopsis thaliana]
gi|332658439|gb|AEE83839.1| transcription initiation factor TFIIH subunit H4 [Arabidopsis
thaliana]
Length = 452
Score = 434 bits (1116), Expect = e-119, Method: Compositional matrix adjust.
Identities = 218/352 (61%), Positives = 261/352 (74%), Gaps = 49/352 (13%)
Query: 1 SNLWKHLINGGALPREPMPSGITARLPTLEDLEAYAIGQWERFLLQLISSAQAERSINFC 60
+NL KH+I+GG LPREPM S +LP+L++LE YA+ QWE FLLQLI+S Q E+
Sbjct: 108 NNLQKHIISGGVLPREPMNSDNAIKLPSLQELETYALKQWECFLLQLINSGQGEKLTGIS 167
Query: 61 SSTMKVFQRGLLIQRDKEAPRLTESGFQFLLMDTNAQLWYIVREYISNSQHDSMLAYERG 120
SS MK+FQRGLL QRDK+ PRLTESGFQFLLMDTNAQLWYI+REYI N++ ER
Sbjct: 168 SSMMKIFQRGLLSQRDKDGPRLTESGFQFLLMDTNAQLWYIIREYILNAE-------ERD 220
Query: 121 INQADLISFLLELSFHVAGEAYNLKTLSEIQRSMIKDFADLGLVKLQQGRKESWFIPT-- 178
++ ADLISFLLELSFHV G+AYNL TL+E+Q + +KD ADLGLVKLQQGRK+SWFIPT
Sbjct: 221 VDPADLISFLLELSFHVTGQAYNLNTLTEVQNNTLKDLADLGLVKLQQGRKDSWFIPTKL 280
Query: 179 -------IADS---------LETNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITK 222
+ADS +ETNFRMYAYSTSKL CEILRLF++IEYQLPNLI AITK
Sbjct: 281 ATNLSVSLADSSARKEGFVVMETNFRMYAYSTSKLQCEILRLFARIEYQLPNLIACAITK 340
Query: 223 ESLYNAVENGLTAE------QQNAHPRVADRIPSVLENVCDQIRLWESDLNRVEMTPAHY 276
ESLYNA +NG+T++ QQN+HPR ADR+PS+ ENV DQIRLWE+DL R+EMT AH+
Sbjct: 341 ESLYNAFDNGITSDQIITFLQQNSHPRCADRVPSIPENVTDQIRLWETDLQRIEMTQAHF 400
Query: 277 YDEFPSR------------------EDSKKMRLVVNAEIHMHMREFLRGQNK 310
YDEFPS+ EDSK+MRLVV +E+H MREFL Q++
Sbjct: 401 YDEFPSKDVFEAACDFAREWRGLLWEDSKRMRLVVKSEVHNQMREFLHTQSR 452
>gi|334186626|ref|NP_001190745.1| transcription initiation factor TFIIH subunit H4 [Arabidopsis
thaliana]
gi|332658440|gb|AEE83840.1| transcription initiation factor TFIIH subunit H4 [Arabidopsis
thaliana]
Length = 482
Score = 434 bits (1115), Expect = e-119, Method: Compositional matrix adjust.
Identities = 218/351 (62%), Positives = 260/351 (74%), Gaps = 49/351 (13%)
Query: 1 SNLWKHLINGGALPREPMPSGITARLPTLEDLEAYAIGQWERFLLQLISSAQAERSINFC 60
+NL KH+I+GG LPREPM S +LP+L++LE YA+ QWE FLLQLI+S Q E+
Sbjct: 108 NNLQKHIISGGVLPREPMNSDNAIKLPSLQELETYALKQWECFLLQLINSGQGEKLTGIS 167
Query: 61 SSTMKVFQRGLLIQRDKEAPRLTESGFQFLLMDTNAQLWYIVREYISNSQHDSMLAYERG 120
SS MK+FQRGLL QRDK+ PRLTESGFQFLLMDTNAQLWYI+REYI N++ ER
Sbjct: 168 SSMMKIFQRGLLSQRDKDGPRLTESGFQFLLMDTNAQLWYIIREYILNAE-------ERD 220
Query: 121 INQADLISFLLELSFHVAGEAYNLKTLSEIQRSMIKDFADLGLVKLQQGRKESWFIPT-- 178
++ ADLISFLLELSFHV G+AYNL TL+E+Q + +KD ADLGLVKLQQGRK+SWFIPT
Sbjct: 221 VDPADLISFLLELSFHVTGQAYNLNTLTEVQNNTLKDLADLGLVKLQQGRKDSWFIPTKL 280
Query: 179 -------IADS---------LETNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITK 222
+ADS +ETNFRMYAYSTSKL CEILRLF++IEYQLPNLI AITK
Sbjct: 281 ATNLSVSLADSSARKEGFVVMETNFRMYAYSTSKLQCEILRLFARIEYQLPNLIACAITK 340
Query: 223 ESLYNAVENGLTAE------QQNAHPRVADRIPSVLENVCDQIRLWESDLNRVEMTPAHY 276
ESLYNA +NG+T++ QQN+HPR ADR+PS+ ENV DQIRLWE+DL R+EMT AH+
Sbjct: 341 ESLYNAFDNGITSDQIITFLQQNSHPRCADRVPSIPENVTDQIRLWETDLQRIEMTQAHF 400
Query: 277 YDEFPSR------------------EDSKKMRLVVNAEIHMHMREFLRGQN 309
YDEFPS+ EDSK+MRLVV +E+H MREFL Q+
Sbjct: 401 YDEFPSKDVFEAACDFAREWRGLLWEDSKRMRLVVKSEVHNQMREFLHTQS 451
>gi|42572935|ref|NP_974564.1| transcription initiation factor TFIIH subunit H4 [Arabidopsis
thaliana]
gi|332658438|gb|AEE83838.1| transcription initiation factor TFIIH subunit H4 [Arabidopsis
thaliana]
Length = 462
Score = 433 bits (1114), Expect = e-119, Method: Compositional matrix adjust.
Identities = 218/352 (61%), Positives = 261/352 (74%), Gaps = 49/352 (13%)
Query: 1 SNLWKHLINGGALPREPMPSGITARLPTLEDLEAYAIGQWERFLLQLISSAQAERSINFC 60
+NL KH+I+GG LPREPM S +LP+L++LE YA+ QWE FLLQLI+S Q E+
Sbjct: 108 NNLQKHIISGGVLPREPMNSDNAIKLPSLQELETYALKQWECFLLQLINSGQGEKLTGIS 167
Query: 61 SSTMKVFQRGLLIQRDKEAPRLTESGFQFLLMDTNAQLWYIVREYISNSQHDSMLAYERG 120
SS MK+FQRGLL QRDK+ PRLTESGFQFLLMDTNAQLWYI+REYI N++ ER
Sbjct: 168 SSMMKIFQRGLLSQRDKDGPRLTESGFQFLLMDTNAQLWYIIREYILNAE-------ERD 220
Query: 121 INQADLISFLLELSFHVAGEAYNLKTLSEIQRSMIKDFADLGLVKLQQGRKESWFIPT-- 178
++ ADLISFLLELSFHV G+AYNL TL+E+Q + +KD ADLGLVKLQQGRK+SWFIPT
Sbjct: 221 VDPADLISFLLELSFHVTGQAYNLNTLTEVQNNTLKDLADLGLVKLQQGRKDSWFIPTKL 280
Query: 179 -------IADS---------LETNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITK 222
+ADS +ETNFRMYAYSTSKL CEILRLF++IEYQLPNLI AITK
Sbjct: 281 ATNLSVSLADSSARKEGFVVMETNFRMYAYSTSKLQCEILRLFARIEYQLPNLIACAITK 340
Query: 223 ESLYNAVENGLTAE------QQNAHPRVADRIPSVLENVCDQIRLWESDLNRVEMTPAHY 276
ESLYNA +NG+T++ QQN+HPR ADR+PS+ ENV DQIRLWE+DL R+EMT AH+
Sbjct: 341 ESLYNAFDNGITSDQIITFLQQNSHPRCADRVPSIPENVTDQIRLWETDLQRIEMTQAHF 400
Query: 277 YDEFPSR------------------EDSKKMRLVVNAEIHMHMREFLRGQNK 310
YDEFPS+ EDSK+MRLVV +E+H MREFL Q++
Sbjct: 401 YDEFPSKDVFEAACDFAREWRGLLWEDSKRMRLVVKSEVHNQMREFLHTQSR 452
>gi|51969958|dbj|BAD43671.1| unnamed protein product [Arabidopsis thaliana]
Length = 452
Score = 432 bits (1112), Expect = e-119, Method: Compositional matrix adjust.
Identities = 218/352 (61%), Positives = 260/352 (73%), Gaps = 49/352 (13%)
Query: 1 SNLWKHLINGGALPREPMPSGITARLPTLEDLEAYAIGQWERFLLQLISSAQAERSINFC 60
+NL KH+I+GG LPREPM S +LP+L++LE YA+ QWE FLLQLI+S Q E+
Sbjct: 108 NNLQKHIISGGVLPREPMNSDNAIKLPSLQELETYALKQWECFLLQLINSGQGEKLTGIS 167
Query: 61 SSTMKVFQRGLLIQRDKEAPRLTESGFQFLLMDTNAQLWYIVREYISNSQHDSMLAYERG 120
SS MK+FQRGLL QRDK+ PRLTESGFQFLLMDTNAQLWYI+REYI N++ ER
Sbjct: 168 SSMMKIFQRGLLSQRDKDGPRLTESGFQFLLMDTNAQLWYIIREYILNAE-------ERD 220
Query: 121 INQADLISFLLELSFHVAGEAYNLKTLSEIQRSMIKDFADLGLVKLQQGRKESWFIPT-- 178
++ ADLISFLLELSFHV G+AYNL TL+E+Q + +KD ADLGLVKLQQGRK+SWFIPT
Sbjct: 221 VDPADLISFLLELSFHVTGQAYNLNTLTEVQNNTLKDLADLGLVKLQQGRKDSWFIPTKL 280
Query: 179 -------IADS---------LETNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITK 222
+ADS +ETNFRMYAYSTSKL CEILRLF++IEYQLPNLI AITK
Sbjct: 281 ATNLSVSLADSSARKEGFVVMETNFRMYAYSTSKLQCEILRLFARIEYQLPNLIACAITK 340
Query: 223 ESLYNAVENGLTAE------QQNAHPRVADRIPSVLENVCDQIRLWESDLNRVEMTPAHY 276
ESLYNA NG+T++ QQN+HPR ADR+PS+ ENV DQIRLWE+DL R+EMT AH+
Sbjct: 341 ESLYNAFGNGITSDQIITFLQQNSHPRCADRVPSIPENVTDQIRLWETDLQRIEMTQAHF 400
Query: 277 YDEFPSR------------------EDSKKMRLVVNAEIHMHMREFLRGQNK 310
YDEFPS+ EDSK+MRLVV +E+H MREFL Q++
Sbjct: 401 YDEFPSKDVFEAACDFAREWRGLLWEDSKRMRLVVKSEVHNQMREFLHTQSR 452
>gi|32487401|emb|CAE05735.1| OSJNBb0017I01.15 [Oryza sativa Japonica Group]
Length = 451
Score = 429 bits (1104), Expect = e-118, Method: Compositional matrix adjust.
Identities = 213/348 (61%), Positives = 262/348 (75%), Gaps = 49/348 (14%)
Query: 1 SNLWKHLINGGALPREPMPSGITARLPTLEDLEAYAIGQWERFLLQLISSAQAERSINFC 60
N+ K+L++GG+LPREP+PS +TARLPTL +LE++A+ QWE FLLQLI+S+Q ER +F
Sbjct: 108 GNMQKYLVDGGSLPREPIPSSVTARLPTLAELESFALEQWECFLLQLINSSQVERGTSFS 167
Query: 61 SSTMKVFQRGLLIQRDKEAPRLTESGFQFLLMDTNAQLWYIVREYISNSQHDSMLAYERG 120
SS M+ FQRGLL RD EAPRLTE+GFQFLLM+TNAQLWYI+REYIS+++ ERG
Sbjct: 168 SSMMRTFQRGLLSSRDGEAPRLTENGFQFLLMETNAQLWYIMREYISSAE-------ERG 220
Query: 121 INQADLISFLLELSFHVAGEAYNLKTLSEIQRSMIKDFADLGLVKLQQGRKESWFIPTIA 180
++ +LISFLLELSFH GEAY+L TL+++QR+ I+D A+LGLVKLQQGRK+SWFIPT
Sbjct: 221 VDPTELISFLLELSFHTLGEAYSLNTLTDVQRNAIRDLAELGLVKLQQGRKDSWFIPTKL 280
Query: 181 DS------------------LETNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITK 222
+ +ETNFRMYAYSTS+LHCEILRLFS++EYQLPNLIVG+ITK
Sbjct: 281 ATNLSASLSDSSSNKEGFVVVETNFRMYAYSTSRLHCEILRLFSRVEYQLPNLIVGSITK 340
Query: 223 ESLYNAVENGLTAE------QQNAHPRVADRIPSVLENVCDQIRLWESDLNRVEMTPAHY 276
ESLY A ENG+TAE QQNAHPRVAD+IP+V ENV DQIRLWE+D NRV+MT +H
Sbjct: 341 ESLYGAFENGITAEQIISFLQQNAHPRVADKIPAVPENVTDQIRLWETDRNRVDMTLSHL 400
Query: 277 YDEFPSR------------------EDSKKMRLVVNAEIHMHMREFLR 306
Y++FPS+ ED+KKMRL+V E H MREFLR
Sbjct: 401 YEDFPSKDMFDQCCDYARDHGCLLWEDAKKMRLIVRVEFHSEMREFLR 448
>gi|218195833|gb|EEC78260.1| hypothetical protein OsI_17944 [Oryza sativa Indica Group]
Length = 459
Score = 422 bits (1084), Expect = e-115, Method: Compositional matrix adjust.
Identities = 213/356 (59%), Positives = 262/356 (73%), Gaps = 57/356 (16%)
Query: 1 SNLWKHLINGGALPREPMPSGITARLPTLEDLEAYAIGQWERFLLQLISSAQAERSINFC 60
N+ K+L++GG+LPREP+PS +TARLPTL +LE++A+ QWE FLLQLI+S+Q ER +F
Sbjct: 108 GNMQKYLVDGGSLPREPIPSSVTARLPTLAELESFALEQWECFLLQLINSSQVERGTSFS 167
Query: 61 SSTMKVFQRGLLIQRDKEAPRLTESGFQFLLMDTNAQLWYIVREYISNSQHDSMLAYERG 120
SS M+ FQRGLL RD EAPRLTE+GFQFLLM+TNAQLWYI+REYIS+++ ERG
Sbjct: 168 SSMMRTFQRGLLSSRDGEAPRLTENGFQFLLMETNAQLWYIMREYISSAE-------ERG 220
Query: 121 INQADLISFLLELSFHVAGEAYNLKTLSEIQRSMIKDFADLGLVKLQ--------QGRKE 172
++ +LISFLLELSFH GEAY+L TL+++QR+ I+D A+LGLVKLQ QGRK+
Sbjct: 221 VDPTELISFLLELSFHTLGEAYSLNTLTDVQRNAIRDLAELGLVKLQQMSRVKPWQGRKD 280
Query: 173 SWFIPTIADS------------------LETNFRMYAYSTSKLHCEILRLFSKIEYQLPN 214
SWFIPT + +ETNFRMYAYSTS+LHCEILRLFS++EYQLPN
Sbjct: 281 SWFIPTKLATNLSASLSDSSSNKEGFVVVETNFRMYAYSTSRLHCEILRLFSRVEYQLPN 340
Query: 215 LIVGAITKESLYNAVENGLTAE------QQNAHPRVADRIPSVLENVCDQIRLWESDLNR 268
LIVG+ITKESLY A ENG+TAE QQNAHPRVAD+IP+V ENV DQIRLWE+D NR
Sbjct: 341 LIVGSITKESLYGAFENGITAEQIISFLQQNAHPRVADKIPAVPENVTDQIRLWETDRNR 400
Query: 269 VEMTPAHYYDEFPSR------------------EDSKKMRLVVNAEIHMHMREFLR 306
V+MT +H Y++FPS+ ED+KKMRL+V E H MREFLR
Sbjct: 401 VDMTLSHLYEDFPSKDMFDQCCDYARDHGCLLWEDAKKMRLIVRVEFHSEMREFLR 456
>gi|414584751|tpg|DAA35322.1| TPA: hypothetical protein ZEAMMB73_386928 [Zea mays]
Length = 451
Score = 419 bits (1078), Expect = e-115, Method: Compositional matrix adjust.
Identities = 210/350 (60%), Positives = 256/350 (73%), Gaps = 49/350 (14%)
Query: 1 SNLWKHLINGGALPREPMPSGITARLPTLEDLEAYAIGQWERFLLQLISSAQAERSINFC 60
N+ K+L++GG+LPREP+P +T RLPT DLEAYA+ QWE FLLQLI+S+Q E+ +F
Sbjct: 108 GNMQKYLVDGGSLPREPLPLSVTGRLPTPADLEAYALDQWECFLLQLINSSQVEKGSSFS 167
Query: 61 SSTMKVFQRGLLIQRDKEAPRLTESGFQFLLMDTNAQLWYIVREYISNSQHDSMLAYERG 120
SS MK FQRGLL RD EA +LTE+GFQFLLM+TNAQLWYI+REYIS+++ ERG
Sbjct: 168 SSMMKTFQRGLLSSRDGEASKLTENGFQFLLMETNAQLWYIMREYISSAE-------ERG 220
Query: 121 INQADLISFLLELSFHVAGEAYNLKTLSEIQRSMIKDFADLGLVKLQQGRKESWFIPTIA 180
++ +LISFLLELSFH G AY+L TL+++QR I+D A+LGLVK QQGRK+SWFIPT
Sbjct: 221 VDPTELISFLLELSFHKLGAAYSLNTLTDVQRIAIRDLAELGLVKQQQGRKDSWFIPTQL 280
Query: 181 DS------------------LETNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITK 222
+ +ETNFRMYAYSTSKLHCEILRLF+++EYQLPNLIVGA+TK
Sbjct: 281 ATNLSASLSDSSSNKEGFVVVETNFRMYAYSTSKLHCEILRLFARVEYQLPNLIVGAVTK 340
Query: 223 ESLYNAVENGLTAEQ------QNAHPRVADRIPSVLENVCDQIRLWESDLNRVEMTPAHY 276
ES+Y A ENG+TAEQ QNAHPRVAD+IP+V ENV DQIRLWE+DLNRVEM P+H
Sbjct: 341 ESIYGAFENGITAEQIISFLRQNAHPRVADKIPAVPENVTDQIRLWETDLNRVEMIPSHL 400
Query: 277 YDEFPSR------------------EDSKKMRLVVNAEIHMHMREFLRGQ 308
Y++FPS+ ED K+MRL+V E H MREFLR Q
Sbjct: 401 YEDFPSKEWFEQCCDYARDNGYLLWEDPKRMRLIVRGEFHPEMREFLRRQ 450
>gi|242074798|ref|XP_002447335.1| hypothetical protein SORBIDRAFT_06g033130 [Sorghum bicolor]
gi|241938518|gb|EES11663.1| hypothetical protein SORBIDRAFT_06g033130 [Sorghum bicolor]
Length = 451
Score = 416 bits (1070), Expect = e-114, Method: Compositional matrix adjust.
Identities = 209/350 (59%), Positives = 254/350 (72%), Gaps = 49/350 (14%)
Query: 1 SNLWKHLINGGALPREPMPSGITARLPTLEDLEAYAIGQWERFLLQLISSAQAERSINFC 60
N+ K+L++GG+LPREP+P +T RLPT DLEAYA+ QWE FLLQLI+S+Q E+ +F
Sbjct: 108 GNMQKYLVDGGSLPREPLPLSVTGRLPTPADLEAYALDQWECFLLQLINSSQVEKGTSFS 167
Query: 61 SSTMKVFQRGLLIQRDKEAPRLTESGFQFLLMDTNAQLWYIVREYISNSQHDSMLAYERG 120
SS MK FQRGLL RD EA +LTE+GFQFLLM+TNAQLWYI+REYIS+++ ERG
Sbjct: 168 SSMMKTFQRGLLSSRDGEASKLTENGFQFLLMETNAQLWYIMREYISSAE-------ERG 220
Query: 121 INQADLISFLLELSFHVAGEAYNLKTLSEIQRSMIKDFADLGLVKLQQGRKESWFIPTIA 180
++ +LISFLLELSFH G AY+L TL+++QR I+D A+LGLVK QQGR + WFIPT
Sbjct: 221 VDPTELISFLLELSFHKLGAAYSLNTLTDVQRIAIRDLAELGLVKQQQGRTDRWFIPTQL 280
Query: 181 DS------------------LETNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITK 222
+ +ETNFRMYAYSTSKLHCEILRLFS++EYQLPNLIVGA+TK
Sbjct: 281 ATNLSASLSDSSSNKEGFVVVETNFRMYAYSTSKLHCEILRLFSRVEYQLPNLIVGAVTK 340
Query: 223 ESLYNAVENGLTAEQ------QNAHPRVADRIPSVLENVCDQIRLWESDLNRVEMTPAHY 276
ES+Y A ENG+TAEQ QNAHPRVAD+IP+V ENV DQIRLWE+D NRVEM P+H
Sbjct: 341 ESIYGAFENGITAEQIISFLRQNAHPRVADKIPTVPENVTDQIRLWETDRNRVEMIPSHL 400
Query: 277 YDEFPSR------------------EDSKKMRLVVNAEIHMHMREFLRGQ 308
Y++FPS+ EDSK+MRL+V E H MREFLR Q
Sbjct: 401 YEDFPSKEWFEQCCDYARDNGYLLWEDSKRMRLIVRGEFHPEMREFLRRQ 450
>gi|357166758|ref|XP_003580836.1| PREDICTED: general transcription factor IIH subunit 4-like
[Brachypodium distachyon]
Length = 451
Score = 413 bits (1062), Expect = e-113, Method: Compositional matrix adjust.
Identities = 206/350 (58%), Positives = 254/350 (72%), Gaps = 49/350 (14%)
Query: 1 SNLWKHLINGGALPREPMPSGITARLPTLEDLEAYAIGQWERFLLQLISSAQAERSINFC 60
N+ K+L++GG+LPREP+ S +T RLPTL +LE YA+ QWE FLLQLI+S+Q ER +F
Sbjct: 108 GNMQKYLVDGGSLPREPISSSVTGRLPTLTELENYALEQWECFLLQLINSSQVERGTSFS 167
Query: 61 SSTMKVFQRGLLIQRDKEAPRLTESGFQFLLMDTNAQLWYIVREYISNSQHDSMLAYERG 120
SS MK FQRGLL RD +AP+L+E+GFQFLLM+TNAQLWYI+REYIS+++ ERG
Sbjct: 168 SSMMKTFQRGLLSSRDGDAPKLSENGFQFLLMETNAQLWYIMREYISSAE-------ERG 220
Query: 121 INQADLISFLLELSFHVAGEAYNLKTLSEIQRSMIKDFADLGLVKLQQGRKESWFIPTIA 180
++ +LISFLLELSFH G AY+ TL+++QR I+D A+LGLVK+QQGRK+SWFIPT
Sbjct: 221 VDPTELISFLLELSFHTLGAAYSFNTLTDVQRIAIRDLAELGLVKVQQGRKDSWFIPTKL 280
Query: 181 DS------------------LETNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITK 222
+ +ETNFR+YAYS S+LHCEILRLFS++EYQLPNLIVGAITK
Sbjct: 281 ATNLSSSLSDSSASKEGIVVVETNFRLYAYSASRLHCEILRLFSRVEYQLPNLIVGAITK 340
Query: 223 ESLYNAVENGLTAEQ------QNAHPRVADRIPSVLENVCDQIRLWESDLNRVEMTPAHY 276
ESLY A +NG+TAEQ QNAHPRVAD+IP V ENV DQIRLWE+D NRV+M +H
Sbjct: 341 ESLYGAFDNGITAEQIISFLKQNAHPRVADKIPVVPENVTDQIRLWETDRNRVDMVLSHV 400
Query: 277 YDEFPSR------------------EDSKKMRLVVNAEIHMHMREFLRGQ 308
Y++FPS+ EDSKKMRL+V E H MREFLR Q
Sbjct: 401 YEDFPSKDMFEQCCDLARDNGFLLWEDSKKMRLIVRVEFHQEMREFLRRQ 450
>gi|326510735|dbj|BAJ91715.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 451
Score = 412 bits (1059), Expect = e-112, Method: Compositional matrix adjust.
Identities = 208/350 (59%), Positives = 252/350 (72%), Gaps = 49/350 (14%)
Query: 1 SNLWKHLINGGALPREPMPSGITARLPTLEDLEAYAIGQWERFLLQLISSAQAERSINFC 60
+N+ K+L++GG LPREP+P +TARLPTL +LE YA+ QWE FLLQLI+S+Q E+ F
Sbjct: 108 ANMQKYLVSGGCLPREPLPFNVTARLPTLVELENYALEQWECFLLQLINSSQVEKGTTFS 167
Query: 61 SSTMKVFQRGLLIQRDKEAPRLTESGFQFLLMDTNAQLWYIVREYISNSQHDSMLAYERG 120
SS MK FQRGLL RD EA +L+E+GFQFLLM+TNAQLWYI+REYIS+++ ERG
Sbjct: 168 SSMMKTFQRGLLSSRDGEAAKLSENGFQFLLMETNAQLWYIMREYISSAE-------ERG 220
Query: 121 INQADLISFLLELSFHVAGEAYNLKTLSEIQRSMIKDFADLGLVKLQQGRKESWFIPTIA 180
++ DLISFLLELSFH G AY+L TL+E+QR + D +LGLVKLQQGRK+SWFIPT
Sbjct: 221 VDPTDLISFLLELSFHTQGAAYSLSTLTEVQRIAVMDLMELGLVKLQQGRKDSWFIPTKL 280
Query: 181 DS------------------LETNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITK 222
+ +ETNFR+YAYS SKLHCEILRLFS++EYQLPNLIVGAITK
Sbjct: 281 ATNLSSSLSDSAASKEGIVVVETNFRLYAYSASKLHCEILRLFSRVEYQLPNLIVGAITK 340
Query: 223 ESLYNAVENGLTAE------QQNAHPRVADRIPSVLENVCDQIRLWESDLNRVEMTPAHY 276
ESLY A +NG+TAE QQNAHPRV D+IP V ENV DQIRLWE+D NRVEM +H
Sbjct: 341 ESLYGAFDNGITAEQIISFLQQNAHPRVIDKIPIVPENVTDQIRLWENDRNRVEMILSHV 400
Query: 277 YDEFPSR------------------EDSKKMRLVVNAEIHMHMREFLRGQ 308
Y++FPS+ ED+KKMRL+V+ E H MREFLR Q
Sbjct: 401 YEDFPSKDMFEQCCDHARDNGYLLWEDAKKMRLIVSGEFHQEMREFLRRQ 450
>gi|357123176|ref|XP_003563288.1| PREDICTED: LOW QUALITY PROTEIN: general transcription factor IIH
subunit 4-like [Brachypodium distachyon]
Length = 452
Score = 412 bits (1058), Expect = e-112, Method: Compositional matrix adjust.
Identities = 205/350 (58%), Positives = 253/350 (72%), Gaps = 49/350 (14%)
Query: 1 SNLWKHLINGGALPREPMPSGITARLPTLEDLEAYAIGQWERFLLQLISSAQAERSINFC 60
N+ K+L++GG+LPREP+PS +T RLPTL +LE YA+ QWE FLLQLI+S+Q ER +F
Sbjct: 109 GNMQKYLVDGGSLPREPIPSSVTGRLPTLTELENYALEQWECFLLQLINSSQVERGTSFS 168
Query: 61 SSTMKVFQRGLLIQRDKEAPRLTESGFQFLLMDTNAQLWYIVREYISNSQHDSMLAYERG 120
SS MK FQRGLL RD +AP+L+E+GFQFLLM+TN QLWYI+REYIS+++ ERG
Sbjct: 169 SSMMKTFQRGLLSSRDGDAPKLSENGFQFLLMETNVQLWYIMREYISSAE-------ERG 221
Query: 121 INQADLISFLLELSFHVAGEAYNLKTLSEIQRSMIKDFADLGLVKLQQGRKESWFIPTIA 180
++ +LISFLLELSFH G AY+ TL+++QR I+D A+LGLVK+QQGRK+SWFIPT
Sbjct: 222 VDPTELISFLLELSFHTLGAAYSFNTLTDVQRIAIRDLAELGLVKVQQGRKDSWFIPTKL 281
Query: 181 DS------------------LETNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITK 222
+ +ETNFR+YAYS S+LHCEILRLFS++EYQLPNLIVGAITK
Sbjct: 282 ATNLSSSLSDSSASKEGIVVVETNFRLYAYSASRLHCEILRLFSRVEYQLPNLIVGAITK 341
Query: 223 ESLYNAVENGLTAEQ------QNAHPRVADRIPSVLENVCDQIRLWESDLNRVEMTPAHY 276
ESLY A +NG+TAEQ QNAHP VAD+IP V ENV DQIRLWE+D NRV+M +H
Sbjct: 342 ESLYGAFDNGITAEQIISFLKQNAHPXVADKIPVVPENVTDQIRLWETDRNRVDMVLSHV 401
Query: 277 YDEFPSR------------------EDSKKMRLVVNAEIHMHMREFLRGQ 308
Y++FPS+ EDSKKMRL+V E H MREFLR Q
Sbjct: 402 YEDFPSKDLFEQCCDLARDNGFLLWEDSKKMRLIVRVEFHQEMREFLRRQ 451
>gi|222629781|gb|EEE61913.1| hypothetical protein OsJ_16644 [Oryza sativa Japonica Group]
Length = 427
Score = 374 bits (961), Expect = e-101, Method: Compositional matrix adjust.
Identities = 194/348 (55%), Positives = 241/348 (69%), Gaps = 73/348 (20%)
Query: 1 SNLWKHLINGGALPREPMPSGITARLPTLEDLEAYAIGQWERFLLQLISSAQAERSINFC 60
N+ K+L++GG+LPREP+PS +TARLPTL +LE++A+ QWE + +A I
Sbjct: 108 GNMQKYLVDGGSLPREPIPSSVTARLPTLAELESFALEQWE------VRMTKAYVCI--- 158
Query: 61 SSTMKVFQRGLLIQRDKEAPRLTESGFQFLLMDTNAQLWYIVREYISNSQHDSMLAYERG 120
D EAPRLTE+GFQFLLM+TNAQLWYI+REYIS+++ ERG
Sbjct: 159 ---------------DGEAPRLTENGFQFLLMETNAQLWYIMREYISSAE-------ERG 196
Query: 121 INQADLISFLLELSFHVAGEAYNLKTLSEIQRSMIKDFADLGLVKLQQGRKESWFIPTIA 180
++ +LISFLLELSFH GEAY+L TL+++QR+ I+D A+LGLVKLQQGRK+SWFIPT
Sbjct: 197 VDPTELISFLLELSFHTLGEAYSLNTLTDVQRNAIRDLAELGLVKLQQGRKDSWFIPTKL 256
Query: 181 DS------------------LETNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITK 222
+ +ETNFRMYAYSTS+LHCEILRLFS++EYQLPNLIVG+ITK
Sbjct: 257 ATNLSASLSDSSSNKEGFVVVETNFRMYAYSTSRLHCEILRLFSRVEYQLPNLIVGSITK 316
Query: 223 ESLYNAVENGLTAE------QQNAHPRVADRIPSVLENVCDQIRLWESDLNRVEMTPAHY 276
ESLY A ENG+TAE QQNAHPRVAD+IP+V ENV DQIRLWE+D NRV+MT +H
Sbjct: 317 ESLYGAFENGITAEQIISFLQQNAHPRVADKIPAVPENVTDQIRLWETDRNRVDMTLSHL 376
Query: 277 YDEFPSR------------------EDSKKMRLVVNAEIHMHMREFLR 306
Y++FPS+ ED+KKMRL+V E H MREFLR
Sbjct: 377 YEDFPSKDMFDQCCDYARDHGCLLWEDAKKMRLIVRVEFHSEMREFLR 424
>gi|414584750|tpg|DAA35321.1| TPA: hypothetical protein ZEAMMB73_386928 [Zea mays]
Length = 386
Score = 358 bits (919), Expect = 2e-96, Method: Compositional matrix adjust.
Identities = 176/283 (62%), Positives = 216/283 (76%), Gaps = 31/283 (10%)
Query: 1 SNLWKHLINGGALPREPMPSGITARLPTLEDLEAYAIGQWERFLLQLISSAQAERSINFC 60
N+ K+L++GG+LPREP+P +T RLPT DLEAYA+ QWE FLLQLI+S+Q E+ +F
Sbjct: 108 GNMQKYLVDGGSLPREPLPLSVTGRLPTPADLEAYALDQWECFLLQLINSSQVEKGSSFS 167
Query: 61 SSTMKVFQRGLLIQRDKEAPRLTESGFQFLLMDTNAQLWYIVREYISNSQHDSMLAYERG 120
SS MK FQRGLL RD EA +LTE+GFQFLLM+TNAQLWYI+REYIS+++ ERG
Sbjct: 168 SSMMKTFQRGLLSSRDGEASKLTENGFQFLLMETNAQLWYIMREYISSAE-------ERG 220
Query: 121 INQADLISFLLELSFHVAGEAYNLKTLSEIQRSMIKDFADLGLVKLQQGRKESWFIPTIA 180
++ +LISFLLELSFH G AY+L TL+++QR I+D A+LGLVK QQGRK+SWFIPT
Sbjct: 221 VDPTELISFLLELSFHKLGAAYSLNTLTDVQRIAIRDLAELGLVKQQQGRKDSWFIPTQL 280
Query: 181 DS------------------LETNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITK 222
+ +ETNFRMYAYSTSKLHCEILRLF+++EYQLPNLIVGA+TK
Sbjct: 281 ATNLSASLSDSSSNKEGFVVVETNFRMYAYSTSKLHCEILRLFARVEYQLPNLIVGAVTK 340
Query: 223 ESLYNAVENGLTAEQ------QNAHPRVADRIPSVLENVCDQI 259
ES+Y A ENG+TAEQ QNAHPRVAD+IP+V ENV DQ+
Sbjct: 341 ESIYGAFENGITAEQIISFLRQNAHPRVADKIPAVPENVTDQV 383
>gi|90399251|emb|CAJ86205.1| B0213E10.4 [Oryza sativa Indica Group]
Length = 470
Score = 354 bits (909), Expect = 2e-95, Method: Compositional matrix adjust.
Identities = 200/377 (53%), Positives = 247/377 (65%), Gaps = 88/377 (23%)
Query: 1 SNLWKHLINGGALPREPMPSGITARLPTLEDLEAYAIGQWE------------------- 41
N+ K+L++GG+LPREP+PS +TARLPTL +LE++A+ QWE
Sbjct: 108 GNMQKYLVDGGSLPREPIPSSVTARLPTLAELESFALEQWEVRMTKAYVCISYCLNATNV 167
Query: 42 --------RFLL----------QLISSAQAER-----SINFC--SSTMKVFQRGLL---I 73
FL QLISS + ++ NF SS KV L I
Sbjct: 168 HSPSKGTHSFLYGKIVLLAAIDQLISSRERDKFQLIHDENFSARSSEFKVHLISSLAFGI 227
Query: 74 QRDKEAPRLTESGFQFLLMDTNAQLWYIVREYISNSQHDSMLAYERGINQADLISFLLEL 133
D EAPRLTE+GFQFLLM+TNAQLWYI+REYIS+++ ERG++ +LISFLLEL
Sbjct: 228 YLDGEAPRLTENGFQFLLMETNAQLWYIMREYISSAE-------ERGVDPTELISFLLEL 280
Query: 134 SFHVAGEAYNLKTLSEIQRSMIKDFADLGLVKLQQGRKESWFIPTIADSLETNFRMYAYS 193
SFH GEAY+L TL+++QR+ I+D A+LGLVKLQQG F+ +ETNFRMYAYS
Sbjct: 281 SFHTLGEAYSLNTLTDVQRNAIRDLAELGLVKLQQG-----FV-----VVETNFRMYAYS 330
Query: 194 TSKLHCEILRLFSKIEYQLPNLIVGAITKESLYNAVENGLTAE------QQNAHPRVADR 247
TS+LHCEILRLFS++EYQLPNLIVG+ITKESLY A ENG+TAE QQNAHPRVAD+
Sbjct: 331 TSRLHCEILRLFSRVEYQLPNLIVGSITKESLYGAFENGITAEQIISFLQQNAHPRVADK 390
Query: 248 IPSVLENVCDQIRLWESDLNRVEMTPAHYYDEFPSR------------------EDSKKM 289
IP+V ENV DQIRLWE+D NRV+MT +H Y++FPS+ ED+KKM
Sbjct: 391 IPAVPENVTDQIRLWETDRNRVDMTLSHLYEDFPSKDMFDQCCDYARDHGCLLWEDAKKM 450
Query: 290 RLVVNAEIHMHMREFLR 306
RL+V E H MREFLR
Sbjct: 451 RLIVRVEFHSEMREFLR 467
>gi|115461368|ref|NP_001054284.1| Os04g0680000 [Oryza sativa Japonica Group]
gi|113565855|dbj|BAF16198.1| Os04g0680000 [Oryza sativa Japonica Group]
Length = 444
Score = 329 bits (844), Expect = 9e-88, Method: Compositional matrix adjust.
Identities = 177/352 (50%), Positives = 232/352 (65%), Gaps = 72/352 (20%)
Query: 2 NLWKHLINGGALPREPMPSGITARLPTLEDLEAYAIGQWERFLLQLISSAQAERSINFCS 61
N+ K+L++GG+LPREP+PS +TARLPTL +LE++A+ QWE + +A I++C
Sbjct: 109 NMQKYLVDGGSLPREPIPSSVTARLPTLAELESFALEQWE------VRMTKAYVCISYCL 162
Query: 62 STMKV---------FQRGLLI------------QRDK----EAPRLTESGFQFLLMDTNA 96
+ V F G ++ +RDK + +F LM+TNA
Sbjct: 163 NATNVHSPSKGTHSFLYGKIVLLAAIDQLISSRERDKFQLIHDENFSARSSEFKLMETNA 222
Query: 97 QLWYIVREYISNSQHDSMLAYERGINQADLISFLLELSFHVAGEAYNLKTLSEIQRSMIK 156
QLWYI+REYIS+++ ERG++ +LISFLLELSFH GEAY+L TL+++QR+ I+
Sbjct: 223 QLWYIMREYISSAE-------ERGVDPTELISFLLELSFHTLGEAYSLNTLTDVQRNAIR 275
Query: 157 DFADLGLVKLQQGRKESWFIPTIADSLETNFRMYAYSTSKLHCEILRLFSKIEYQLPNLI 216
D A+LGLVKLQQG F+ +ETNFRMYAYSTS+LHCEILRLFS++EYQLPNLI
Sbjct: 276 DLAELGLVKLQQG-----FV-----VVETNFRMYAYSTSRLHCEILRLFSRVEYQLPNLI 325
Query: 217 VGAITKESLYNAVENGLTAE------QQNAHPRVADRIPSVLENVCDQIRLWESDLNRVE 270
VG+ITKESLY A ENG+TAE QQNAHPRVAD+IP+V ENV DQIRLWE+D NRV+
Sbjct: 326 VGSITKESLYGAFENGITAEQIISFLQQNAHPRVADKIPAVPENVTDQIRLWETDRNRVD 385
Query: 271 MTPAHYYDEFPSR------------------EDSKKMRLVVNAEIHMHMREF 304
MT +H Y++FPS+ ED+KKMRL+V E H M ++
Sbjct: 386 MTLSHLYEDFPSKDMFDQCCDYARDHGCLLWEDAKKMRLIVRVEFHSEMHDY 437
>gi|167997877|ref|XP_001751645.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162697626|gb|EDQ83962.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 462
Score = 291 bits (746), Expect = 2e-76, Method: Compositional matrix adjust.
Identities = 152/347 (43%), Positives = 218/347 (62%), Gaps = 51/347 (14%)
Query: 7 LINGGALPREPMPSGITARLPTLEDLEAYAIGQWERFLLQLISSAQAERSINFCSSTMKV 66
L GG PR+ + + AR+P DLE YA+ QWE LLQL+ A + +KV
Sbjct: 115 LSTGGGPPRDVVSESVAARVPNSADLENYAMKQWESVLLQLVDCAADGPAGPKNPFIIKV 174
Query: 67 FQRGLLIQRDKEAPRLTESGFQFLLMDTNAQLWYIVREYISNSQHDSMLAYERGINQADL 126
FQR L+ + E+P LT+ GFQFLLMDTN+QLW +VREY+++S+ +RG + +L
Sbjct: 175 FQRSGLLTPENESPSLTDLGFQFLLMDTNSQLWQLVREYVTSSE-------DRGTDSGEL 227
Query: 127 ISFLLELSFHVAGEAYNLKTLSEIQRSMIKDFADLGLVKLQQGRKESWFIPT-IADSL-- 183
+ FLLEL FH+ GEAY++ +LS + ++ + A LGLVKLQQG KESW+IPT +A +L
Sbjct: 228 VGFLLELGFHLVGEAYSVNSLSPALQKVLDELAALGLVKLQQGMKESWYIPTKLASNLSA 287
Query: 184 -----------------ETNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKESLY 226
ETNF++YAY++SKL EILR F+++EYQLPNL+V +TKES+
Sbjct: 288 SLSESTDWQSSEGFVVVETNFKVYAYTSSKLQTEILRCFTRLEYQLPNLVVATLTKESVN 347
Query: 227 NAVENGLTAEQ------QNAHPRVADRIPSVLENVCDQIRLWESDLNRVEMTPAHYYDEF 280
A+ +G++AEQ ++AHP VA +IP V E V DQ+RLWE+D NRV+ PA++YD+F
Sbjct: 348 KALGSGISAEQIISFLRKHAHPHVAQKIPVVPETVSDQLRLWETDRNRVQFEPAYFYDDF 407
Query: 281 PSR------------------EDSKKMRLVVNAEIHMHMREFLRGQN 309
P+ ED+ RL+V +++H MR+++R Q+
Sbjct: 408 PTMAIYEAVVAHARDLGGLLFEDASAKRLIVRSDLHEDMRQYIRKQS 454
>gi|449521313|ref|XP_004167674.1| PREDICTED: RNA polymerase II transcription factor B subunit 2-like,
partial [Cucumis sativus]
Length = 296
Score = 270 bits (689), Expect = 8e-70, Method: Compositional matrix adjust.
Identities = 137/195 (70%), Positives = 154/195 (78%), Gaps = 10/195 (5%)
Query: 1 SNLWKHLINGGALPREPMPSGITARLPTLEDLEAYAIGQWERFLLQLISSAQAERSINFC 60
+NL K LI+G L REPMPS IT RLP+LEDLEAYA+ QWE FLLQLI+S QAE+ N
Sbjct: 108 ANLQKLLIHGEVLAREPMPSNITVRLPSLEDLEAYALDQWECFLLQLINSGQAEKPSNIS 167
Query: 61 SSTMKVFQRGLLIQRDKEAPRLTESGFQFLLMDTNAQLWYIVREYISNSQHDSMLAYERG 120
SS MKVFQ+GLL QRDKEAPRLTESGFQFLLM+TNAQLWYI+REYISN++ ERG
Sbjct: 168 SSVMKVFQKGLLSQRDKEAPRLTESGFQFLLMETNAQLWYIIREYISNAE-------ERG 220
Query: 121 INQADLISFLLELSFHVAGEAYNLKTLSEIQRSMIKDFADLGLVKLQQGRKESWFIPTIA 180
++ ADLISFLLELSFHV GEAY++ TLS+ QR IKD ADLGLVKLQQGRKESWFIPT
Sbjct: 221 VDPADLISFLLELSFHVTGEAYDIDTLSDEQRYAIKDLADLGLVKLQQGRKESWFIPT-- 278
Query: 181 DSLETNFRMYAYSTS 195
L TN M +S
Sbjct: 279 -KLATNLSMSLADSS 292
>gi|302806060|ref|XP_002984780.1| hypothetical protein SELMODRAFT_121159 [Selaginella moellendorffii]
gi|302808297|ref|XP_002985843.1| hypothetical protein SELMODRAFT_123271 [Selaginella moellendorffii]
gi|300146350|gb|EFJ13020.1| hypothetical protein SELMODRAFT_123271 [Selaginella moellendorffii]
gi|300147366|gb|EFJ14030.1| hypothetical protein SELMODRAFT_121159 [Selaginella moellendorffii]
Length = 459
Score = 246 bits (629), Expect = 7e-63, Method: Compositional matrix adjust.
Identities = 134/348 (38%), Positives = 205/348 (58%), Gaps = 52/348 (14%)
Query: 7 LINGGALPREPMPSGITARLPTLEDLEAYAIGQWERFLLQLISSAQAE-RSINFCSSTMK 65
L G PR+P+P I R+P+ ++L+ YA +WE + L++ A + S + ++
Sbjct: 118 LSTGLGTPRDPLPPDIAVRMPSAKELDDYATEKWEAWFSSLVNFASPDGPSASTNGFIVQ 177
Query: 66 VFQRGLLIQRDKEAPRLTESGFQFLLMDTNAQLWYIVREYISNSQHDSMLAYERGINQAD 125
+FQ+ L+ ++ P++T +GFQFLL+D N+QLW ++REY+ ++ R I+ +
Sbjct: 178 LFQKADLLTSGQD-PKITPAGFQFLLLDRNSQLWRVIREYVQYAE-------ARQIDTGE 229
Query: 126 LISFLLELSFHVAGEAYNLKTLSEIQRSMIKDFADLGLVKLQQGRKESWFIPTIADS--- 182
LI FLLE+ F+ GE Y++ +L QR+ ++ A LG+++LQ+G K+ WFIPT +
Sbjct: 230 LIRFLLEIGFYSVGEPYSMDSLPNSQRNFAEELAMLGVLQLQKGMKDRWFIPTRLATGLS 289
Query: 183 ----------------LETNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKESLY 226
+ETNFR+YAY++SKLH E L +F + EY LPN++VG+ITKES+
Sbjct: 290 ASLSESSAWQTEGFIMVETNFRVYAYTSSKLHIETLHVFVRTEYVLPNILVGSITKESVN 349
Query: 227 NAVENGLTAE------QQNAHPRVADRIPSVLENVCDQIRLWESDLNRVEMTPAHYYDEF 280
A +G++A+ QQ+AHP VA ++PSV E VCDQIRLWESD RV+ PA+ Y+ F
Sbjct: 350 GAFASGISADQIIKFLQQHAHPFVAQKVPSVPETVCDQIRLWESDRVRVQYLPAYCYEGF 409
Query: 281 PSR------------------EDSKKMRLVVNAEIHMHMREFLRGQNK 310
PS ED+ + +VV E H +R FL+ NK
Sbjct: 410 PSTSVYESVVAHARDRNGLLWEDANRKMIVVGGEHHEAIRAFLQNINK 457
>gi|359497414|ref|XP_003635508.1| PREDICTED: general transcription factor IIH subunit 4-like, partial
[Vitis vinifera]
Length = 209
Score = 221 bits (563), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 108/140 (77%), Positives = 118/140 (84%), Gaps = 7/140 (5%)
Query: 1 SNLWKHLINGGALPREPMPSGITARLPTLEDLEAYAIGQWERFLLQLISSAQAERSINFC 60
+NL KHLI GG LPREPMPS IT RLP+L+DLEAYA+GQWE FLLQLISS Q E+ NF
Sbjct: 77 TNLQKHLIYGGVLPREPMPSNITVRLPSLDDLEAYALGQWECFLLQLISSTQTEKLTNFS 136
Query: 61 SSTMKVFQRGLLIQRDKEAPRLTESGFQFLLMDTNAQLWYIVREYISNSQHDSMLAYERG 120
SS MKVFQRGLL QR+KEAPRLTESGFQFLLMDTNAQLWYI+REYISNS+ ERG
Sbjct: 137 SSMMKVFQRGLLTQREKEAPRLTESGFQFLLMDTNAQLWYIMREYISNSE-------ERG 189
Query: 121 INQADLISFLLELSFHVAGE 140
++ ADLISFLLELSFHV GE
Sbjct: 190 VDPADLISFLLELSFHVTGE 209
>gi|296084771|emb|CBI25914.3| unnamed protein product [Vitis vinifera]
Length = 225
Score = 221 bits (562), Expect = 4e-55, Method: Compositional matrix adjust.
Identities = 108/140 (77%), Positives = 118/140 (84%), Gaps = 7/140 (5%)
Query: 1 SNLWKHLINGGALPREPMPSGITARLPTLEDLEAYAIGQWERFLLQLISSAQAERSINFC 60
+NL KHLI GG LPREPMPS IT RLP+L+DLEAYA+GQWE FLLQLISS Q E+ NF
Sbjct: 77 TNLQKHLIYGGVLPREPMPSNITVRLPSLDDLEAYALGQWECFLLQLISSTQTEKLTNFS 136
Query: 61 SSTMKVFQRGLLIQRDKEAPRLTESGFQFLLMDTNAQLWYIVREYISNSQHDSMLAYERG 120
SS MKVFQRGLL QR+KEAPRLTESGFQFLLMDTNAQLWYI+REYISNS+ ERG
Sbjct: 137 SSMMKVFQRGLLTQREKEAPRLTESGFQFLLMDTNAQLWYIMREYISNSE-------ERG 189
Query: 121 INQADLISFLLELSFHVAGE 140
++ ADLISFLLELSFHV GE
Sbjct: 190 VDPADLISFLLELSFHVTGE 209
>gi|296084734|emb|CBI25875.3| unnamed protein product [Vitis vinifera]
Length = 258
Score = 206 bits (525), Expect = 8e-51, Method: Compositional matrix adjust.
Identities = 122/255 (47%), Positives = 149/255 (58%), Gaps = 66/255 (25%)
Query: 118 ERGINQADLISFLLELSFHVAGEAYNLKTLSEIQRSMIKDFADLGLVKLQQGRKESWFIP 177
ERG++ ADLISFLLELSFHV GEAYN+ TL+E QR+ IKD DLGLVKLQQGRKESWFIP
Sbjct: 1 ERGVDPADLISFLLELSFHVTGEAYNINTLTEFQRNTIKDLVDLGLVKLQQGRKESWFIP 60
Query: 178 T---------IADS---------LETNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIV-- 217
T ++D+ +ETNFR+YAYS+SKLHCEILRLFS+ L + ++
Sbjct: 61 TKLATNLSMSLSDTSSRKQGFVVVETNFRLYAYSSSKLHCEILRLFSRYASMLFDCLLCI 120
Query: 218 ------GAITKESL--YNAVEN---------GLTAEQQNAHP-----------RVADRIP 249
G + SL Y + ++ A P +A++IP
Sbjct: 121 CYSSQKGTLLDVSLIMYECLRTFSLGKIIFWFFSSVSTVATPCHGYLVIFTISCLAEKIP 180
Query: 250 SVLENVCDQIRLWESDLNRVEMTPAHYYDEFPSR------------------EDSKKMRL 291
+ QIRLWE+DLNRVE P+H YDEFPSR EDSKKMRL
Sbjct: 181 CLQFTNMSQIRLWETDLNRVETMPSHLYDEFPSRDVFEAACDFAREYGGLLWEDSKKMRL 240
Query: 292 VVNAEIHMHMREFLR 306
VV AEIH+HMRE+LR
Sbjct: 241 VVKAEIHLHMREYLR 255
>gi|359497087|ref|XP_002267711.2| PREDICTED: general transcription factor IIH subunit 4-like [Vitis
vinifera]
Length = 238
Score = 198 bits (504), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 113/228 (49%), Positives = 133/228 (58%), Gaps = 73/228 (32%)
Query: 115 LAYERGINQADLISFLLELSFHVAGEAYNLKTLSEIQRSMIKDFADLGLVKLQQGRKESW 174
L ERG++ ADLISFLLELSFHV GEAYN+ TL+E QR+ IKD DLGLVKLQQGRKESW
Sbjct: 45 LVQERGVDPADLISFLLELSFHVTGEAYNINTLTEFQRNTIKDLVDLGLVKLQQGRKESW 104
Query: 175 FIPT---------IADS---------LETNFRMYAYSTSKLHCEILRLFSKIEYQLPNLI 216
FIPT ++D+ +ETNFR+YAYS+SKLHCEILRLFS+
Sbjct: 105 FIPTKLATNLSMSLSDTSSRKQGFVVVETNFRLYAYSSSKLHCEILRLFSR--------- 155
Query: 217 VGAITKESLYNAVENGLTAEQQNAHPRVADRIPSVLENVCDQIRLWESDLNRVEMTPAHY 276
+ ++ H + IRLWE+DLNRVE P+H
Sbjct: 156 --------------SSVSTVATPCHGYL--------------IRLWETDLNRVETMPSHL 187
Query: 277 YDEFPSR------------------EDSKKMRLVVNAEIHMHMREFLR 306
YDEFPSR EDSKKMRLVV AEIH+HMRE+LR
Sbjct: 188 YDEFPSRDVFEAACDFAREYGGLLWEDSKKMRLVVKAEIHLHMREYLR 235
>gi|384246869|gb|EIE20357.1| Tfb2-domain-containing protein [Coccomyxa subellipsoidea C-169]
Length = 451
Score = 178 bits (452), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 115/345 (33%), Positives = 173/345 (50%), Gaps = 53/345 (15%)
Query: 9 NGGALPREPMPSGITARLPTLEDLEAYAIGQWERFLLQLISSAQAERSINFCSSTMKVFQ 68
GG + + +P+G+ + P+ E L +YA QWE + L++ + + ++++
Sbjct: 110 TGGKVGIDEVPAGVLQQAPSREMLSSYAQQQWEVITVPLLNQLKCTCGLGSSFASLQTLM 169
Query: 69 RGLLIQRDKEAPRLTESGFQFLLMDTNAQLWYIVREYISNSQHDSMLAYERGINQADLIS 128
L+ E+ + E GFQFLL DT +QLW ++R YI++ + S G +++
Sbjct: 170 LYLVGSICAESRSIEEQGFQFLLSDTYSQLWRLLRAYIASGEERS------GAPLGTILN 223
Query: 129 FLLELSFHVAGEAYNLKTLSEIQRSMIKDFADLGLVKLQQGRKES-WFIPT--------- 178
FLL+L F G + L L + QR + D A LGL+ + S W PT
Sbjct: 224 FLLQLGFREVGSPFALSGLDDSQRHIAADMAQLGLLMPFTAKDGSVWLAPTRLALALAGG 283
Query: 179 --------IADS---LETNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKESLYN 227
+ D +ETN+R+YAY++S L +LRLF++ E LPNL VG +T+ES+
Sbjct: 284 SSGQAQHDVTDGFVVVETNYRVYAYTSSLLQTALLRLFTRCECILPNLFVGVLTRESVTG 343
Query: 228 AVENGLTAEQ------QNAHPRVADRIPSVLENVCDQIRLWESDLNRVEMTPAHYYDEFP 281
A+ GL+A+Q Q+AHP VA R P V E V DQ+RLW++D RV A YD+FP
Sbjct: 344 ALACGLSADQIVLYLRQHAHPHVASRTPVVPEVVADQVRLWQADTMRVRHNRAVLYDDFP 403
Query: 282 SR------------------EDSKK--MRLVVNAEIHMHMREFLR 306
S ED K RL V H MRE+++
Sbjct: 404 SAQVFQLSAQKARTLGVWLWEDPKAGMGRLAVQEAGHDAMREYIK 448
>gi|260810774|ref|XP_002600123.1| hypothetical protein BRAFLDRAFT_57175 [Branchiostoma floridae]
gi|229285409|gb|EEN56135.1| hypothetical protein BRAFLDRAFT_57175 [Branchiostoma floridae]
Length = 457
Score = 162 bits (409), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 102/325 (31%), Positives = 174/325 (53%), Gaps = 54/325 (16%)
Query: 1 SNLWKHLINGGA-------LPREPMPSGITARLPTLEDLEAYAIGQWERFLLQLISSAQA 53
+NL L+ GG LP + + A L+ Y++ +WE L ++ S +A
Sbjct: 111 ANLRTALLGGGKPWFSVVQLPPDKHAKDVAA-------LDTYSLERWEVLLNFIVGSGEA 163
Query: 54 ERSINFCSSTMKVFQRGLLIQRDKEA--PRLTESGFQFLLMDTNAQLWYIVREYISNSQH 111
+ S + M++ + L++ ++ + P +T +GFQFLLMDT +Q+WYI+ +Y+ Q
Sbjct: 164 QVSKDI----MEILIKSGLMKSEEGSLHPTITPAGFQFLLMDTPSQVWYIILQYLDTMQ- 218
Query: 112 DSMLAYERGINQADLISFLLELSFHVAGEAYNLKTLSEIQRSMIKDFADLGLVKLQQGRK 171
RG+N + + FL ++SF G+ Y + +S+ + ++ +LGLV Q+ RK
Sbjct: 219 ------SRGLNLVEALQFLFQISFSTLGKDYPTEGMSDSMQQFLQHLRELGLVN-QRKRK 271
Query: 172 ESWFIPT---------IADS-----------LETNFRMYAYSTSKLHCEILRLFSKIEYQ 211
F PT I+D +E+N+R+YAY+ S+L ++ LFS+I Y+
Sbjct: 272 SGRFYPTRLAIHLASGISDVEKDFHKEGYLVVESNYRIYAYTDSELQVALIGLFSEILYR 331
Query: 212 LPNLIVGAITKESLYNAVENGLTAEQ------QNAHPRVADRIPSVLENVCDQIRLWESD 265
PN++V +T++S+ AV G+TA+Q NAHP+ R+P V + DQIRLWE +
Sbjct: 332 FPNMVVANLTRDSVQEAVVRGITADQILHFLRVNAHPKALHRVPIVPPTISDQIRLWEME 391
Query: 266 LNRVEMTPAHYYDEFPSREDSKKMR 290
+R+ T Y++F S+ D + +R
Sbjct: 392 RDRLTFTEGVLYNQFLSQPDFEMLR 416
>gi|41053973|ref|NP_956221.1| general transcription factor IIH subunit 4 [Danio rerio]
gi|39794736|gb|AAH64301.1| General transcription factor IIH, polypeptide 4 [Danio rerio]
Length = 466
Score = 161 bits (408), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 96/300 (32%), Positives = 159/300 (53%), Gaps = 49/300 (16%)
Query: 29 LEDLEAYAIGQWERFLLQLISSAQAERSINFCSSTMKVFQRGLLIQRDKEAPRLTESGFQ 88
+E L+ YA+ +WE L ++ S A S + + Q GL+ EAP +T +GFQ
Sbjct: 138 VESLDRYAMERWEVILHFMVGSPSAAVSQDLAQ---LLIQAGLMKSETGEAPCITSAGFQ 194
Query: 89 FLLMDTNAQLWYIVREYISNSQHDSMLAYERGINQADLISFLLELSFHVAGEAYNLKTLS 148
FLL+DT +QLWY +Y+ +Q RG++ +++SFL +LSF G Y+++ +S
Sbjct: 195 FLLLDTASQLWYFTLQYLKTAQ-------SRGMDLVEILSFLFQLSFSTLGRDYSVEGMS 247
Query: 149 EIQRSMIKDFADLGLVKLQQGRKESWFIPT----------------------------IA 180
E + ++ + GLV Q+ RK + PT
Sbjct: 248 ESLLTFLQHLREFGLV-FQRKRKSRRYYPTRLAITLAAGVTANPASGSASSALGAIPGTG 306
Query: 181 DS----LETNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKESLYNAVENGLTAE 236
D+ +ETN+R+YAY+ S+L ++ LFS++ Y+ PNL+V +T+ES+ A+ NG+TA+
Sbjct: 307 DTGFIVVETNYRIYAYTNSELQIALVALFSEMLYRFPNLVVAQVTRESVQQAISNGITAQ 366
Query: 237 Q------QNAHPRVADRIPSVLENVCDQIRLWESDLNRVEMTPAHYYDEFPSREDSKKMR 290
Q AHP + + P + + DQIRLWE + +R++ T Y++F S+ D + +R
Sbjct: 367 QIIHFLRTRAHPVMLKQTPVLPPTITDQIRLWELEKDRLQFTEGVLYNQFLSQADFEVLR 426
>gi|72074363|ref|XP_796111.1| PREDICTED: general transcription factor IIH subunit 4
[Strongylocentrotus purpuratus]
Length = 469
Score = 159 bits (402), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 107/319 (33%), Positives = 169/319 (52%), Gaps = 37/319 (11%)
Query: 1 SNLWKHLINGG---ALPREPMPSGITARLPTLEDLEAYAIGQWERFLLQLISSAQAERSI 57
+NL LI GG A+ + G ++ L+ Y+ +WE L L+ S++A ++
Sbjct: 117 TNLKTALIGGGKPWAISGKGGKGGKDKKVKETATLDKYSSERWECVLHFLVGSSKAVDTL 176
Query: 58 NFCSSTMKVFQRGLLIQRDKEAPRLTESGFQFLLMDTNAQLWYIVREYISNSQHDSMLAY 117
+ +T+ + + P +T SGFQFLL+DT +Q+W+ + +Y+ SQ
Sbjct: 177 SRDIATVLTHSGLMRLGESGGTPVITPSGFQFLLLDTPSQVWFFMLQYLETSQ------- 229
Query: 118 ERGINQADLISFLLELSFHVAGEAYNLKTLSEIQRSMIKDFADLGLVKLQQGRKESWFIP 177
RG++ D +SFL +LSF G+ Y+ + ++E Q ++ +LGLV Q+ RK + P
Sbjct: 230 ARGLDIVDALSFLFQLSFSTLGKDYSSEGMTEQQLHFLQHLRELGLV-FQRKRKSMRYYP 288
Query: 178 T-IADSL-------------------ETNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIV 217
T +A +L ETNFR+YAY+ S L EIL LF + Y+ PNL V
Sbjct: 289 TRLAINLASGVSSMAKDDHKDGFIVVETNFRVYAYTESDLQVEILGLFCSMMYRFPNLSV 348
Query: 218 GAITKESLYNAVENGLTAEQ------QNAHPRVADRIPSVLENVCDQIRLWESDLNRVEM 271
A+T+ES+ A+ NG+TAEQ +AHP + + P V + DQ+RLWE + +R+
Sbjct: 349 AALTRESVQLAISNGITAEQILSFLRTHAHPNMRLKTPIVPPTISDQVRLWELERDRLSF 408
Query: 272 TPAHYYDEFPSREDSKKMR 290
T Y+EF S D + +R
Sbjct: 409 TQGIIYNEFLSLHDFEVLR 427
>gi|348542188|ref|XP_003458568.1| PREDICTED: general transcription factor IIH subunit 4 [Oreochromis
niloticus]
Length = 461
Score = 159 bits (401), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 102/324 (31%), Positives = 169/324 (52%), Gaps = 47/324 (14%)
Query: 2 NLWKHLINGG-ALPREPMPSGITARLPTLEDLEAYAIGQWERFLLQLISSAQAERSINFC 60
NL L+ GG A E G +E L+ YA+ +WE +LQ + + + S +
Sbjct: 110 NLKTALLGGGRAWADEGSTLGPDRHARDIESLDRYAMERWE-IILQFMVGSPSAVSQDLA 168
Query: 61 SSTMKVFQRGLLIQRDKEAPRLTESGFQFLLMDTNAQLWYIVREYISNSQHDSMLAYERG 120
+ Q GL+ EAP +T +GFQFLL+DT +QLWY +Y+ +Q RG
Sbjct: 169 Q---LLVQAGLMKSEAGEAPYITSAGFQFLLLDTASQLWYFTLQYLKTAQ-------SRG 218
Query: 121 INQADLISFLLELSFHVAGEAYNLKTLSEIQRSMIKDFADLGLVKLQQGRKESWFIPT-- 178
++ +++SFL +LSF G Y+++ +SE + ++ + GLV Q+ RK + PT
Sbjct: 219 MDLVEILSFLFQLSFSSLGRDYSVEGMSESLLTFLQHLREFGLV-FQRKRKSRRYYPTRL 277
Query: 179 ----------------------IADS----LETNFRMYAYSTSKLHCEILRLFSKIEYQL 212
D+ +ETN+R+YAY+ S+L ++ LFS++ Y+
Sbjct: 278 AITLAAGVTSSSSVSNLSSSPGTGDAGFIVVETNYRIYAYTNSELQIALVALFSEMLYRF 337
Query: 213 PNLIVGAITKESLYNAVENGLTAEQ------QNAHPRVADRIPSVLENVCDQIRLWESDL 266
PN++V +T+ES+ A+ NG+TA+Q AHP + + P + + DQIRLWE +
Sbjct: 338 PNVVVAQLTRESVQQAIANGITAQQIIHFLRTRAHPVMLTQTPVLPPTITDQIRLWELER 397
Query: 267 NRVEMTPAHYYDEFPSREDSKKMR 290
+R++ T Y++F S+ D + +R
Sbjct: 398 DRLQFTEGVLYNQFLSQADFEVLR 421
>gi|432883135|ref|XP_004074222.1| PREDICTED: general transcription factor IIH subunit 4-like [Oryzias
latipes]
Length = 460
Score = 158 bits (400), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 101/323 (31%), Positives = 169/323 (52%), Gaps = 46/323 (14%)
Query: 2 NLWKHLINGGAL-PREPMPSGITARLPTLEDLEAYAIGQWERFLLQLISSAQAERSINFC 60
NL L+ GG + E + G +E L+ YA+ +WE L ++ S A
Sbjct: 110 NLRIALLGGGKVWADEGIILGPDRHARDIESLDRYAMERWEVILQFMVGSPSAVSQ---- 165
Query: 61 SSTMKVFQRGLLIQRDKEAPRLTESGFQFLLMDTNAQLWYIVREYISNSQHDSMLAYERG 120
+ Q GL+ EAP +T +GFQFLL+DT +QLWY+ +Y++ +Q RG
Sbjct: 166 DLAQLLVQAGLMKSEAGEAPYITSAGFQFLLLDTASQLWYLTLQYLNTAQ-------SRG 218
Query: 121 INQADLISFLLELSFHVAGEAYNLKTLSEIQRSMIKDFADLGLVKLQQGRKESWFIPT-- 178
+ +++SFL +LSF G Y+++ +SE + ++ + GLV Q+ RK + PT
Sbjct: 219 MELVEILSFLFQLSFSTLGRDYSVEGMSESLLTFLQHLREFGLV-FQRKRKSRRYYPTRL 277
Query: 179 ---------------------IADS----LETNFRMYAYSTSKLHCEILRLFSKIEYQLP 213
D+ +ETN+R+YAY+ S+L ++ LFS++ Y+ P
Sbjct: 278 AITLAAGVSSNSPSNMTNTPGTGDAGFIVVETNYRIYAYTNSELQIALVALFSEMLYRFP 337
Query: 214 NLIVGAITKESLYNAVENGLTAEQ------QNAHPRVADRIPSVLENVCDQIRLWESDLN 267
N++V +T+ES+ A+ NG+TA+Q AHP + + P++ + DQIRLWE + +
Sbjct: 338 NVVVAHLTRESVQQAIANGITAQQIIHFLRTRAHPVMLKQSPALPPTITDQIRLWELERD 397
Query: 268 RVEMTPAHYYDEFPSREDSKKMR 290
R++ T Y++F S+ D + +R
Sbjct: 398 RLQFTEGVLYNQFLSQADFEVLR 420
>gi|147899535|ref|NP_001085110.1| general transcription factor IIH, polypeptide 4, 52kDa [Xenopus
laevis]
gi|47939830|gb|AAH72322.1| MGC83106 protein [Xenopus laevis]
Length = 455
Score = 158 bits (399), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 92/285 (32%), Positives = 160/285 (56%), Gaps = 37/285 (12%)
Query: 32 LEAYAIGQWERFLLQLISSAQAERSINFCSSTMKVFQRGLLIQRDKEAPRLTESGFQFLL 91
L+ YA +WE L ++ S A S + + Q GL+ EAP ++ +GFQFLL
Sbjct: 142 LDKYAEERWEVILHFMVGSPSAAVSQDLAQ---LLIQAGLMKNESGEAPCISSAGFQFLL 198
Query: 92 MDTNAQLWYIVREYISNSQHDSMLAYERGINQADLISFLLELSFHVAGEAYNLKTLSEIQ 151
+DT +QLWY + +Y+ +++ RG+N +++SF+ +LSF G+ Y+++ +S+
Sbjct: 199 LDTPSQLWYFMLQYLKSAE-------SRGMNLVEILSFMFQLSFSTLGKDYSVEGMSDSL 251
Query: 152 RSMIKDFADLGLVKLQQGRKESWFIPT-------------IADS-------LETNFRMYA 191
+ ++ + GLV Q+ RK + PT + DS +ETN+R+YA
Sbjct: 252 LTFLQHLREFGLV-FQRKRKSRRYYPTRLAINLASGISGSVVDSHKQGFIVVETNYRIYA 310
Query: 192 YSTSKLHCEILRLFSKIEYQLPNLIVGAITKESLYNAVENGLTAEQ------QNAHPRVA 245
Y+ S+L ++ LFS++ Y+ PNL+V +T+E++ A+ NG+TAEQ AHP +
Sbjct: 311 YTDSELQIALIALFSEMLYRFPNLVVAQVTRENVQQAIGNGITAEQIIHFLRTRAHPVML 370
Query: 246 DRIPSVLENVCDQIRLWESDLNRVEMTPAHYYDEFPSREDSKKMR 290
+ P++ + DQIRLWE + +R+ + Y++F S+ D + +R
Sbjct: 371 QQNPALPPTITDQIRLWELERDRLRFSEGVLYNQFLSQVDFELLR 415
>gi|145351329|ref|XP_001420034.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144580267|gb|ABO98327.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 495
Score = 156 bits (395), Expect = 9e-36, Method: Compositional matrix adjust.
Identities = 112/364 (30%), Positives = 174/364 (47%), Gaps = 83/364 (22%)
Query: 11 GALPREPMPSGITARLPTLEDLEAYAIGQWERFLLQLISSAQAE---------------- 54
GA RE +G+ A++P L AYA +WE LL L ++ A
Sbjct: 136 GADARED--AGVAAKVPDRATLNAYAKAKWEDLLLTLTGASNAFSRPGAKVKGRLDAQAL 193
Query: 55 -RSINFCSSTMKVFQRGLLIQRDKEAPRLTESGFQFLLMDTNAQLWYIVREYISNSQHDS 113
R+ ++T ++G Q+ + +T GF FLL Q+W ++ +YI +SQ S
Sbjct: 194 FRAAGLTTATTAALKKG--GQKRLKNAGVTAEGFAFLLQTAQEQIWVLLTQYIRDSQKTS 251
Query: 114 MLAYERGINQADLISFLLELSFHVAGEAYNLK-TLSEIQRSMIKDFADLGLVKLQQGRKE 172
+ ISFLL L+F G AY + LS+ ++ ++ D LGL+ + +K+
Sbjct: 252 ATS---------AISFLLRLTFQEPGRAYAMTGVLSDTEQDVVLDLTHLGLLYTFEVKKK 302
Query: 173 SWFIPTIADS-------------------------LETNFRMYAYSTSKLHCEILRLFSK 207
+++PT+ S +ETN+R+YAY++S + EILRLF++
Sbjct: 303 FYYVPTLLASGLSGGFTGDDGDTKAAAAAAEGHIIVETNYRVYAYTSSAVEMEILRLFTR 362
Query: 208 IEYQLPNLIVGAITKESLYNAVENGLTAEQ------QNAHPRVADRIPSVLENVCDQIRL 261
+Y+LPNL VG +T+ES+ NA+ G+ AEQ +AH +V + PSV VCDQIRL
Sbjct: 363 ADYRLPNLYVGMLTRESVQNALRAGVDAEQIVGYIRAHAHKQVRRKKPSVPSTVCDQIRL 422
Query: 262 WESDLNRVEMTPAHYYDEFPS--------------------REDSKKMRLVVNAEIHMHM 301
W D+ R+E Y +FP R+D+ + RL V A H M
Sbjct: 423 WARDMERMEAEECVLYCDFPQAGTFYGAVVSEAEKRGALLWRDDASR-RLTVRASAHDEM 481
Query: 302 REFL 305
+ +
Sbjct: 482 KAVV 485
>gi|290987279|ref|XP_002676350.1| predicted protein [Naegleria gruberi]
gi|284089952|gb|EFC43606.1| predicted protein [Naegleria gruberi]
Length = 532
Score = 156 bits (395), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 105/335 (31%), Positives = 172/335 (51%), Gaps = 65/335 (19%)
Query: 30 EDLEAYAIGQWERFLLQLISSAQAERSINFCSSTMKVFQRGLLIQRDKEAPRLTESGFQF 89
E L+ Y+ +WE LL L+ +A AE F + ++ + LI++ + R+T GFQF
Sbjct: 204 EFLQEYSKRKWENVLLYLVGTA-AESEQTFSGNVNELLKYSQLIKKS-DTVRITNEGFQF 261
Query: 90 LLMDTNAQLWYIVREYISNSQHDSMLAYERGINQADLISFLLELSFHVAGEAYNLKTLSE 149
LL +T Q+W +++ Y+ S +R + ++++F+ EL F G+ Y+ K L+
Sbjct: 262 LLQETKVQVWKLLKHYLETSG-------QRNQVKNEILNFIFELGFLDVGKEYSSKDLTS 314
Query: 150 IQRSMIKDFADLGLVKLQQGRKES----WFIPT-IADSL--------------------- 183
Q+S++ DF DLG++ L + +K+ +F PT +A SL
Sbjct: 315 TQKSLLVDFNDLGIIYLHRDKKKKIKDKYFFPTPLAKSLTVSMSTSYDLISSFGSHNSIN 374
Query: 184 ------ETNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKESLYNAVENGLTAEQ 237
ETN+R+YAY+ S L +L LF EY+LPN++VG IT+ ++ A++NG++A Q
Sbjct: 375 NGYIIVETNYRVYAYTNSPLQIALLSLFIFPEYRLPNMVVGLITRSTIREALKNGISAHQ 434
Query: 238 ------QNAHPRVADRIPSVLENVCDQIRLWESDLNRVEMTPAHYYDEFPSRED------ 285
NAHP++ + P + + V DQI LWE + NRV T + YD+F + +
Sbjct: 435 ILQFLRLNAHPQMRLKKPVIPDTVSDQILLWEKERNRVIKTTSVVYDKFTNVSELNATVD 494
Query: 286 ------------SKKMRLVVNAEIHMHMREFLRGQ 308
+KM +V E H M+EF+ Q
Sbjct: 495 YARRQGALLWHSEEKMMMVCKREFHGLMKEFISSQ 529
>gi|336370852|gb|EGN99192.1| hypothetical protein SERLA73DRAFT_90464 [Serpula lacrymans var.
lacrymans S7.3]
gi|336383609|gb|EGO24758.1| hypothetical protein SERLADRAFT_361686 [Serpula lacrymans var.
lacrymans S7.9]
Length = 469
Score = 156 bits (394), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 99/291 (34%), Positives = 154/291 (52%), Gaps = 41/291 (14%)
Query: 28 TLEDLEAYAIGQWERFLLQLISSAQAERSINFCSSTMKVFQR-GLLIQRDKEAPRLTESG 86
T+E L+AYA+ +WE L ++SS Q + + QR GL+ Q A ++T +G
Sbjct: 141 TVETLDAYALERWETILHYMVSSGQGSLPTKPSQGVLYLLQRSGLMTQNHGSALQITSAG 200
Query: 87 FQFLLMDTNAQLWYIVREYISNSQHDSMLAYERGINQADLISFLLELSFHVAGEAYNLKT 146
FQFLL + QLW ++ +Y+ +A ER ++ +++SFL LS G Y+ +
Sbjct: 201 FQFLLHTPHDQLWDLLLQYLH-------MAEERQMDLVEVLSFLFMLSTMDLGREYSTEG 253
Query: 147 LSEIQRSMIKDFADLGLVKLQQGRKESWFIPT-IADS----------------------- 182
LSE Q++M++D D GLV Q+ F PT +A +
Sbjct: 254 LSETQKAMLEDLRDYGLV-WQRKATSKRFSPTRLATTLTSSCPPLPTSTGTSGGPQSQGF 312
Query: 183 --LETNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKESLYNAVENGLTAEQ--- 237
LETN+R+YAY+ L +L LF ++Y+ PNL+VG +T+ES+ A+ NG++AEQ
Sbjct: 313 IVLETNYRIYAYTDKPLQTAVLNLFITMKYRFPNLVVGMLTRESVKKALSNGISAEQIIS 372
Query: 238 ---QNAHPRVADRIPSVLENVCDQIRLWESDLNRVEMTPAHYYDEFPSRED 285
+AHP++ P + V DQIRLWE + NR++ + Y +F S D
Sbjct: 373 YLTTHAHPQMRKNNPLLPVTVQDQIRLWELERNRLKSEEGYLYKDFGSHAD 423
>gi|303272589|ref|XP_003055656.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226463630|gb|EEH60908.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 476
Score = 155 bits (393), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 100/313 (31%), Positives = 159/313 (50%), Gaps = 71/313 (22%)
Query: 20 SGITARLPTLEDLEAYAIGQWERFLLQLISSAQAERSINFCSSTMKV---FQRGLLI--- 73
S + + LP+ EDLE+YA G+WE LL L ++ A + ++ + V F+ LI
Sbjct: 135 SDLGSALPSPEDLESYAKGRWEALLLTLTGASDAFAAAGANAADLDVGALFRAAGLIGDA 194
Query: 74 -QRDKEAPRLTESGFQFLLMDTNAQLWYIVREYISNSQHDSMLAYERGINQADLISFLLE 132
+ +KE +TE+GF+FLL Q+W + ++ ++SFLL+
Sbjct: 195 SKGEKEG--VTEAGFKFLLSTAREQIWAL-------------------LDAPAVLSFLLK 233
Query: 133 LSFHVAGEAYNLKTLSEIQRSMIKDFADLGLVKLQQGRKESWFIPTIADS---------- 182
L+F G AY+ L Q+ +++D A LGL+ + +++PT S
Sbjct: 234 LTFQAPGVAYSTDGLPASQKGVVRDVAKLGLLYPLAAAGKGYYVPTSLSSGLSGGGGGDD 293
Query: 183 --------------------------LETNFRMYAYSTSKLHCEILRLFSKIEYQLPNLI 216
+ETNFR+YAY++S + EILRLF++ +Y+LPNL
Sbjct: 294 DGDGGVGGGGKKSGDGGGVGARGHIIVETNFRVYAYTSSAVEVEILRLFTRPDYKLPNLY 353
Query: 217 VGAITKESLYNAVENGLTAEQ------QNAHPRVADRI-PSVLENVCDQIRLWESDLNRV 269
VG +T+E++ A+ G++AEQ ++AHP+ P++ VCDQIRLW D NRV
Sbjct: 354 VGMMTREAVVTALRGGISAEQIVSYLRKHAHPQARKTPGPAIPATVCDQIRLWSKDENRV 413
Query: 270 EMTPAHYYDEFPS 282
+ TP Y +FP+
Sbjct: 414 KYTPCVLYCDFPT 426
>gi|307106040|gb|EFN54287.1| hypothetical protein CHLNCDRAFT_25123 [Chlorella variabilis]
Length = 458
Score = 154 bits (388), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 103/302 (34%), Positives = 154/302 (50%), Gaps = 43/302 (14%)
Query: 17 PMPSGITARLPTLEDLEAYAIGQWERFLLQLI----SSAQAERSINFCSSTMK--VFQRG 70
P+P A +P+ +L+AYA QWE LL L+ + A ++ + + G
Sbjct: 118 PLPGHPAAPVPSAAELDAYARRQWEALLLYLVNGNGTPPMAPPVLHATPIDIPSLLAAAG 177
Query: 71 LLIQRDKEAP-RLTESGFQFLLMDTNAQLWYIVREYISNSQHDSMLAYERGINQADLISF 129
L+++ + ++TE GFQFLL + +QLW VR+Y++ +L G + A I+F
Sbjct: 178 LMVKDECTLEQKITEHGFQFLLANLYSQLWSAVRQYLT------LLNTAGGADLAVAINF 231
Query: 130 LLELSFHVAGEAYNLKTLSEIQRSMIKDFADLGLVKLQQGRKESWFIPT-IADSL----- 183
LL L A A L +R++ LGL+ G E W PT +A L
Sbjct: 232 LLRLGLQGAAAAMAHSQLDSAERTIAAHMCQLGLLMPVPGANELWLHPTRLAAVLAGGGR 291
Query: 184 ---------------ETNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKESLYNA 228
E+NFR+YAY+TS + +LR+F + + LPNL VG IT+ES NA
Sbjct: 292 AGEAAVAPEEGYVIVESNFRVYAYTTSAVQVAVLRVFVRCDALLPNLFVGTITRESATNA 351
Query: 229 VENGLTAEQ------QNAHPRVADRIPSVLENVCDQIRLWESDLNRVEMTPAHYYDEFPS 282
++ G+ A+Q Q+AHPR A + P+V V DQIRLW +L R++ A YD+F S
Sbjct: 352 LDTGIAADQVVAFLRQHAHPRAAAKTPTV---VTDQIRLWAQELKRLQEKNATLYDKFES 408
Query: 283 RE 284
+E
Sbjct: 409 KE 410
>gi|62751795|ref|NP_001015845.1| general transcription factor IIH, polypeptide 4, 52kDa [Xenopus
(Silurana) tropicalis]
gi|58475911|gb|AAH90134.1| general transcription factor II H, polypeptide 4 [Xenopus
(Silurana) tropicalis]
gi|89272862|emb|CAJ82116.1| transcription factor tfb2 [Xenopus (Silurana) tropicalis]
gi|114107989|gb|AAI22900.1| gtf2h4 protein [Xenopus (Silurana) tropicalis]
Length = 455
Score = 154 bits (388), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 91/285 (31%), Positives = 158/285 (55%), Gaps = 37/285 (12%)
Query: 32 LEAYAIGQWERFLLQLISSAQAERSINFCSSTMKVFQRGLLIQRDKEAPRLTESGFQFLL 91
L+ YA +WE L ++ S A S + + Q GL+ EAP ++ +GFQFLL
Sbjct: 142 LDKYAEERWEVILHFMVGSPSAAVSQDLAQ---LLIQAGLMKSESGEAPCISSAGFQFLL 198
Query: 92 MDTNAQLWYIVREYISNSQHDSMLAYERGINQADLISFLLELSFHVAGEAYNLKTLSEIQ 151
+DT +QLWY + +Y+ +++ RG+ +++SF+ +LSF G+ Y+++ +S+
Sbjct: 199 LDTPSQLWYFMLQYLKSAE-------SRGMILVEILSFMFQLSFSTLGKDYSVEGMSDSL 251
Query: 152 RSMIKDFADLGLVKLQQGRKESWFIPT-------------IADS-------LETNFRMYA 191
+ ++ + GLV Q+ RK + PT + DS +ETN+R+YA
Sbjct: 252 LTFLQHLREFGLV-FQRKRKSRRYYPTRLAINLASGISGSVVDSHKQGFIVVETNYRIYA 310
Query: 192 YSTSKLHCEILRLFSKIEYQLPNLIVGAITKESLYNAVENGLTAEQ------QNAHPRVA 245
Y+ S+L ++ LFS++ Y+ PNL+V +T+E++ A+ NG+TAEQ AHP +
Sbjct: 311 YTDSELQIALIALFSEMLYRFPNLVVAQVTRENVQQAIGNGITAEQIIHFLRTRAHPVML 370
Query: 246 DRIPSVLENVCDQIRLWESDLNRVEMTPAHYYDEFPSREDSKKMR 290
+ P + + DQIRLWE + +R+ + Y++F S+ D + +R
Sbjct: 371 QQNPVLPPTITDQIRLWELERDRLRFSEGVLYNQFLSQVDFELLR 415
>gi|396459783|ref|XP_003834504.1| similar to RNA polymerase II transcription factor B subunit 2
[Leptosphaeria maculans JN3]
gi|312211053|emb|CBX91139.1| similar to RNA polymerase II transcription factor B subunit 2
[Leptosphaeria maculans JN3]
Length = 483
Score = 152 bits (384), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 96/303 (31%), Positives = 154/303 (50%), Gaps = 56/303 (18%)
Query: 28 TLEDLEAYAIGQWERFLLQLISSAQAERSINFCSS-----TMKVFQRGLLIQRDKEAPRL 82
++E L+ Y+ GQWE L L+S A RS + + T K+ G L++ PR+
Sbjct: 138 SVEFLDEYSRGQWEGILYYLVSGAAGLRSDSISRAEVGPGTKKLLMEGDLVRVIHGTPRI 197
Query: 83 TESGFQFLLMDTNAQLWYIVREYISNSQHDSMLAYERGINQADLISFLLELSFHVAGEAY 142
T+ GF F+L +TNAQ+W ++ Y+ + +E G+++ +++SFL L G Y
Sbjct: 198 TKDGFSFVLQETNAQVWSLLIVYLK-------MVHELGMSETEVLSFLFMLGSLDLGRDY 250
Query: 143 NLKTLSEIQRSMIKDFADLGLVKLQQGRKESWFIPT------IADS-------------- 182
++ TLS+ Q M+ D + +GLV + + F PT +DS
Sbjct: 251 SISTLSDTQLQMLDDLSAMGLV-YRTSKDARTFYPTRLATTLTSDSGSAMSASSNDIAQA 309
Query: 183 -----------------LETNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKESL 225
+ETN+R+YAY+ S + IL LF+K++++ PNL+ G +TKES+
Sbjct: 310 NQGNAGTLATANKGFIIIETNYRLYAYTNSLIQIAILSLFTKLQHRFPNLVSGKLTKESV 369
Query: 226 YNAVENGLTAEQ------QNAHPRVADRIPSVLENVCDQIRLWESDLNRVEMTPAHYYDE 279
+ AV G+T+ Q AHP++ + + V DQIRLWE + RVE+TP +
Sbjct: 370 HKAVSAGITSAQIISYLSTYAHPQMQKNVSFIPPTVMDQIRLWEYEGERVEVTPGFLMKD 429
Query: 280 FPS 282
F S
Sbjct: 430 FGS 432
>gi|393221241|gb|EJD06726.1| transcription factor Tfb2 [Fomitiporia mediterranea MF3/22]
Length = 464
Score = 152 bits (383), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 89/289 (30%), Positives = 151/289 (52%), Gaps = 38/289 (13%)
Query: 28 TLEDLEAYAIGQWERFLLQLISSAQAERSINFCSSTMKVFQRGLLIQRDKEAPRLTESGF 87
TLE L+AYA+ +WE L ++SS + + + +R L+ + ++T GF
Sbjct: 136 TLEMLDAYAVERWETILHYMVSSGTGQMPARPSQGVLFLLERSGLMSGNGGNMKITSFGF 195
Query: 88 QFLLMDTNAQLWYIVREYISNSQHDSMLAYERGINQADLISFLLELSFHVAGEAYNLKTL 147
QFLL +AQLW ++ +Y+ +A ER ++ +++ FL LS G Y+ + L
Sbjct: 196 QFLLHSPHAQLWELLLQYLH-------MAEERQMDLIEVLGFLFMLSTMELGRGYSTENL 248
Query: 148 SEIQRSMIKDFADLGLVKLQQGRKESWF--------------IPTIADS----------- 182
E Q++M++D D GL+ ++ ++ +PT
Sbjct: 249 GETQKAMLEDLRDYGLIWQKKASSRRFYPTRLATTLTSSLPPLPTSGSGGANAQAQGFII 308
Query: 183 LETNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKESLYNAVENGLTAEQ----- 237
LETN+R+YAY+ + L +L LF ++Y+ PNL+VG++T++S+ A+ NG+TA+Q
Sbjct: 309 LETNYRIYAYTDNPLQTAVLNLFVTLKYRFPNLVVGSLTRDSVRKALANGITADQIIKYL 368
Query: 238 -QNAHPRVADRIPSVLENVCDQIRLWESDLNRVEMTPAHYYDEFPSRED 285
+AHP++ P + V DQIRLWE + NR++ + Y F S+ D
Sbjct: 369 TTHAHPQMRKNDPLIPVTVQDQIRLWELERNRLKSQEGYLYTAFASQAD 417
>gi|410911638|ref|XP_003969297.1| PREDICTED: general transcription factor IIH subunit 4-like
[Takifugu rubripes]
Length = 465
Score = 152 bits (383), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 100/327 (30%), Positives = 164/327 (50%), Gaps = 49/327 (14%)
Query: 2 NLWKHLINGG-ALPREPMPSGITARLPTLEDLEAYAIGQWERFLLQLISSAQAERSINFC 60
NL L+ GG A E G + L+ YA +WE L ++ S A S +
Sbjct: 110 NLKIALLGGGRAWADEGGTLGPDRHARDIGSLDRYATERWEVILHFMVGSPCAAVSQDLA 169
Query: 61 SSTMKVFQRGLLIQRDKEAPRLTESGFQFLLMDTNAQLWYIVREYISNSQHDSMLAYERG 120
+ GL+ E P +T +GFQFLL+DT +QLWY +Y+ +Q RG
Sbjct: 170 Q---LLVHAGLMKSEAGEPPYITSAGFQFLLLDTASQLWYFTLQYLKTAQ-------SRG 219
Query: 121 INQADLISFLLELSFHVAGEAYNLKTLSEIQRSMIKDFADLGLVKLQQGRKESWFIPT-- 178
++ +++SFL +LSF G Y+++ +S+ + ++ + GLV Q+ RK + PT
Sbjct: 220 MDLVEILSFLFQLSFSTLGRDYSVEGMSDSLLTFLQHLREFGLV-FQRKRKSRRYYPTRL 278
Query: 179 -----IADS------------------------LETNFRMYAYSTSKLHCEILRLFSKIE 209
DS +ETN+R+YAY+ S+L ++ LFS++
Sbjct: 279 AITLATGDSSSSLHTPTASLASTPGSGDSGFIVVETNYRIYAYTNSELQIALVALFSEML 338
Query: 210 YQLPNLIVGAITKESLYNAVENGLTAEQ------QNAHPRVADRIPSVLENVCDQIRLWE 263
Y+ PN++V +T+ES+ A+ NG+TA+Q AHP + + P + + DQIRLWE
Sbjct: 339 YRFPNVVVAQVTRESVQQAIANGITAQQIIHFLRTRAHPVMLRQTPFLPPTITDQIRLWE 398
Query: 264 SDLNRVEMTPAHYYDEFPSREDSKKMR 290
+ +R++ T Y++F S+ D + +R
Sbjct: 399 LERDRLQFTEGVLYNQFLSQTDFEVLR 425
>gi|327266348|ref|XP_003217968.1| PREDICTED: general transcription factor IIH subunit 4-like [Anolis
carolinensis]
Length = 460
Score = 150 bits (380), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 94/290 (32%), Positives = 159/290 (54%), Gaps = 46/290 (15%)
Query: 32 LEAYAIGQWERFLLQLISSAQAERSINFC-----SSTMKVFQRGLLIQRDKEAPRLTESG 86
L+ YA +WE L ++ S A S + + MK + G E P +T SG
Sbjct: 146 LDKYAEERWEVILDFMVGSPSAAVSQDLAQLLTEAGLMKSSEPG-------EPPCITSSG 198
Query: 87 FQFLLMDTNAQLWYIVREYISNSQHDSMLAYERGINQADLISFLLELSFHVAGEAYNLKT 146
FQFLL+DT++QLWY + +Y+ +++ RG++ +++SFL +LSF G+ Y+++
Sbjct: 199 FQFLLLDTSSQLWYFMLQYLQSAE-------TRGMDLVEILSFLFQLSFSTLGKDYSVEG 251
Query: 147 LSEIQRSMIKDFADLGLVKLQQGRKESWFIPT-IADSL-------------------ETN 186
+SE + ++ + GLV Q+ RK + PT +A +L ETN
Sbjct: 252 MSESLLNFLQHLREFGLV-FQRKRKSRRYYPTRLAINLSSGISGITIDTRNQGFIIVETN 310
Query: 187 FRMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKESLYNAVENGLTAEQ------QNA 240
+R+YAY+ S+L ++ LFS++ Y+ PNL+V +T+ES+ A+ NG+TA+Q A
Sbjct: 311 YRIYAYTDSELQIALIALFSEMLYRFPNLVVAQVTRESVQQAIANGITADQIIHFLRTRA 370
Query: 241 HPRVADRIPSVLENVCDQIRLWESDLNRVEMTPAHYYDEFPSREDSKKMR 290
HP + + P + + DQIRLWE + +R+ + Y++F S+ D + +R
Sbjct: 371 HPVMLKQTPVLPPTITDQIRLWELERDRLRFSEGVLYNQFLSQVDFELLR 420
>gi|178056954|ref|NP_001116592.1| general transcription factor IIH subunit 4 [Sus scrofa]
gi|41529162|dbj|BAD08424.1| general transcription factor IIH, polypeptide 4 [Sus scrofa]
gi|47496805|dbj|BAD08426.2| general transcription factor IIH, polypeptide 4 [Sus scrofa]
Length = 463
Score = 150 bits (380), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 100/326 (30%), Positives = 169/326 (51%), Gaps = 56/326 (17%)
Query: 29 LEDLEAYAIGQWERFLLQLISSAQAERSINFCSSTMKVFQRGLLIQRDK-EAPRLTESGF 87
+ L+ YA +WE L ++ S A S + + Q GL+ + E P +T +GF
Sbjct: 146 VPSLDKYAEERWEVVLHFMVGSPSAAVSQDLAQ---LLSQAGLMKSAEPGEPPCITSAGF 202
Query: 88 QFLLMDTNAQLWYIVREYISNSQHDSMLAYERGINQADLISFLLELSFHVAGEAYNLKTL 147
QFLL+DT AQLWY + +Y+ +Q RG++ +++SFL +LSF G+ Y+++ +
Sbjct: 203 QFLLLDTPAQLWYFMLQYLQTAQ-------SRGMDLVEILSFLFQLSFSTLGKDYSVEGM 255
Query: 148 SEIQRSMIKDFADLGLVKLQQGRKESWFIPT-IADSL-------------------ETNF 187
S+ + ++ +LGLV Q+ RK + PT +A +L ETN+
Sbjct: 256 SDSLLNFLQHLRELGLV-FQRKRKSRRYYPTRLAINLSSGVSGAGGTVHQPGFIVVETNY 314
Query: 188 RMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKESLYNAVENGLTAEQ------QNAH 241
R+YAY+ S+L ++ LFS++ Y+ PN++V +T+ES+ A+ +G+TA+Q AH
Sbjct: 315 RLYAYTESELQIALIALFSEMLYRFPNMVVAQVTRESVQQAIASGITAQQIIHFLRTRAH 374
Query: 242 PRVADRIPSVLENVCDQIRLWESDLNRVEMTPAHYYDEFPSR------------------ 283
P + + P + + DQIRLWE + +R+ T Y++F S+
Sbjct: 375 PVMLKQTPVLPPTITDQIRLWELERDRLRFTEGVLYNQFLSQVDFELLLAHARELGVLVF 434
Query: 284 EDSKKMRLVVNAEIHMHMREFLRGQN 309
E+S K +VV H ++ F + Q
Sbjct: 435 ENSAKRLMVVTPAGHSDVKRFWKRQK 460
>gi|255079788|ref|XP_002503474.1| predicted protein [Micromonas sp. RCC299]
gi|226518741|gb|ACO64732.1| predicted protein [Micromonas sp. RCC299]
Length = 458
Score = 150 bits (379), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 95/296 (32%), Positives = 151/296 (51%), Gaps = 39/296 (13%)
Query: 22 ITARLPTLEDLEAYAIGQWERFLLQLISSAQAERSINFCSSTMKVFQ-RGLLIQRDKEAP 80
+ + P+ E +E +A G+WE L+ L +R +F+ GL+ ++ ++
Sbjct: 135 MGGKRPSPEKIEEFAKGRWEALLMTLTGR---DRRKGPGLDVAALFRGAGLVAEKSNKSN 191
Query: 81 R--LTESGFQFLLMDTNAQLWYIVREYISNSQHDSMLAYERGINQADLISFLLELSFHVA 138
+TE GF+FLL Q+W ++ EY+ +R + +I F+L L+F
Sbjct: 192 GWGITEKGFRFLLSTAREQIWTLLTEYVRQYSAPG----DRTLVAPAVIGFMLRLTFQAV 247
Query: 139 GEAYNLKTLSEIQRSMIKDFADLGLVKLQQG-RKESWFIPT-------IADS-------- 182
G+ Y + L QR++ +D A LGL+ L G KE +++PT +AD
Sbjct: 248 GQPYRVDDLPSAQRAIAEDLAHLGLLYLFAGPGKEGYYVPTQLTAGKDVADGDASLGGDP 307
Query: 183 -----LETNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKESLYNAVENGLTAEQ 237
ETNFR+YAY+ S + CEILRLF++ +Y+LPNL VG +T+E+++ A++ G+ AEQ
Sbjct: 308 GGHIIAETNFRVYAYTFSDVECEILRLFTRPDYRLPNLYVGMLTREAVHEALDTGVAAEQ 367
Query: 238 ------QNAHP--RVADRIPSVLENVCDQIRLWESDLNRVEMTPAHYYDEFPSRED 285
+AHP R + NV DQI LW + RV Y +FP+ D
Sbjct: 368 IIKYIKSHAHPNARKTTNGSGIPPNVADQIMLWAMERRRVRSAECVLYCDFPTGTD 423
>gi|417401351|gb|JAA47565.1| Putative rna polymer [Desmodus rotundus]
Length = 463
Score = 150 bits (379), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 99/326 (30%), Positives = 168/326 (51%), Gaps = 56/326 (17%)
Query: 29 LEDLEAYAIGQWERFLLQLISSAQAERSINFCSSTMKVFQRGLLIQRDK-EAPRLTESGF 87
+ L+ YA +WE L ++ S A S + + Q GL+ + E P +T +GF
Sbjct: 146 VPSLDKYAEERWEVVLHFMVGSPDAAVSQDLAQ---LLIQAGLMKSAEPGEPPCITSAGF 202
Query: 88 QFLLMDTNAQLWYIVREYISNSQHDSMLAYERGINQADLISFLLELSFHVAGEAYNLKTL 147
QFLL+DT AQLWY + +Y+ +Q RG++ +++SFL +LSF G+ Y+++ +
Sbjct: 203 QFLLLDTPAQLWYFMLQYLQTAQ-------SRGMDLVEILSFLFQLSFSTLGKDYSVEGM 255
Query: 148 SEIQRSMIKDFADLGLVKLQQGRKESWFIPT-IADSL-------------------ETNF 187
S+ + ++ + GLV Q+ RK + PT +A +L ETN+
Sbjct: 256 SDSLLNFLQHLREFGLV-FQRKRKSRRYYPTRLAINLSSGVSGAGGTAHQPGFIVVETNY 314
Query: 188 RMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKESLYNAVENGLTAEQ------QNAH 241
R+YAY+ S+L ++ LFS++ Y+ PN++V +T+ES+ A+ +G+TA+Q AH
Sbjct: 315 RLYAYTESELQIALIALFSEMLYRFPNMVVAQVTRESVQQAIASGITAQQIIHFLRTRAH 374
Query: 242 PRVADRIPSVLENVCDQIRLWESDLNRVEMTPAHYYDEFPSR------------------ 283
P + + P + + DQIRLWE + +R+ T Y++F S+
Sbjct: 375 PVMLKQTPVLPPTITDQIRLWELERDRLRFTEGVLYNQFLSQVDFELLLAHARELGVLVF 434
Query: 284 EDSKKMRLVVNAEIHMHMREFLRGQN 309
E+S K +VV H ++ F + Q
Sbjct: 435 ENSAKRLMVVTPAGHGDVKRFWKRQK 460
>gi|392564310|gb|EIW57488.1| transcription factor Tfb2 [Trametes versicolor FP-101664 SS1]
Length = 477
Score = 150 bits (379), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 94/291 (32%), Positives = 153/291 (52%), Gaps = 39/291 (13%)
Query: 27 PTLEDLEAYAIGQWERFLLQLISSAQAERSINFCSSTMKVFQR-GLLIQRDKEAPRLTES 85
P ++ L+ YA+ +WE L ++SS E + + +R GL+ + A ++T
Sbjct: 147 PEIDALDGYALERWETILYYMVSSGTGEFPSQPSKGVLYLLERSGLMARVHSGALQITSG 206
Query: 86 GFQFLLMDTNAQLWYIVREYISNSQHDSMLAYERGINQADLISFLLELSFHVAGEAYNLK 145
GFQFLL + QLW ++ +Y+ +A ER ++ ++ISFLL LS G+ Y+ +
Sbjct: 207 GFQFLLHPPHVQLWELLLQYLQ-------MAEERQMDLVEVISFLLMLSTTELGKNYSTE 259
Query: 146 TLSEIQRSMIKDFADLGLVKLQQGRK--------------ESWFIPTIADS--------- 182
LS Q++M+ D D GL+K + S +PT A S
Sbjct: 260 NLSPTQKTMLDDLRDYGLIKQRTPTSRRFSPTRLATTLTSSSPPLPTSAGSGDGSHAQGF 319
Query: 183 --LETNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKESLYNAVENGLTAEQ--- 237
LETN+R+YAY+ + L +L LF ++ + PNL++GAIT++S+ A+ +G+TA+Q
Sbjct: 320 IVLETNYRLYAYTDNPLQIAVLNLFVTLKSRFPNLVIGAITRDSVKKALASGITADQIIS 379
Query: 238 ---QNAHPRVADRIPSVLENVCDQIRLWESDLNRVEMTPAHYYDEFPSRED 285
+AHP++ P + V DQIRLWE + NR++ + Y F S+ D
Sbjct: 380 YLVTHAHPQMRKNQPLLPVTVQDQIRLWELEKNRMKSQEGYLYTAFASQAD 430
>gi|449540295|gb|EMD31288.1| hypothetical protein CERSUDRAFT_119839 [Ceriporiopsis subvermispora
B]
Length = 412
Score = 150 bits (378), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 96/292 (32%), Positives = 152/292 (52%), Gaps = 41/292 (14%)
Query: 27 PTLEDLEAYAIGQWERFLLQLISSAQAERSINFCSSTMKVFQR-GLLIQRDKEAPRLTES 85
P++E L++YA+ +WE L ++SS + + + + +R GL+ A ++T S
Sbjct: 83 PSIETLDSYALERWETILYYMVSSGNGQYPTKPSDAVLYLLKRSGLMTSVRGAALQITSS 142
Query: 86 GFQFLLMDTNAQLWYIVREYISNSQHDSMLAYERGINQADLISFLLELSFHVAGEAYNLK 145
GFQFLL + QLW ++ +Y+ L ER ++ D++ FLL LS G Y+
Sbjct: 143 GFQFLLHPPHEQLWELLLQYLH-------LTEERQMDLVDVLGFLLMLSTMELGREYSTD 195
Query: 146 TLSEIQRSMIKDFADLGLVKLQQGRKESWFIPT------IADS----------------- 182
LS Q++M++D D GL+ Q+ F PT A S
Sbjct: 196 GLSPTQKAMLEDLRDYGLL-WQRSATSQRFSPTRLATTLTASSNPLPTSSSASADSQSQG 254
Query: 183 ---LETNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKESLYNAVENGLTAEQ-- 237
LETN+R+YAY+ + L +L LF ++ + PNL++GA+T+ES+ A+ NG+TA+Q
Sbjct: 255 FIVLETNYRVYAYTDNPLQIAVLNLFVTMKSRFPNLVIGAVTRESVKKALANGITADQII 314
Query: 238 ----QNAHPRVADRIPSVLENVCDQIRLWESDLNRVEMTPAHYYDEFPSRED 285
+AHP++ P + V DQIRLWE + NRV+ + Y F S+ D
Sbjct: 315 SYLTAHAHPQMRRYKPLLPVTVQDQIRLWELEKNRVKSQEGYLYTAFASQAD 366
>gi|344252968|gb|EGW09072.1| General transcription factor IIH subunit 4 [Cricetulus griseus]
Length = 463
Score = 150 bits (378), Expect = 9e-34, Method: Compositional matrix adjust.
Identities = 92/282 (32%), Positives = 156/282 (55%), Gaps = 38/282 (13%)
Query: 31 DLEAYAIGQWERFLLQLISSAQAERSINFCSSTMKVFQRGLLIQRDK-EAPRLTESGFQF 89
L+ YA +WE L ++ S A S + + Q GL+ + E P +T +GFQF
Sbjct: 148 SLDKYAEERWEVVLHFMVGSPSAAVSQDLAQ---LLSQAGLMKSAEPGEPPCITSAGFQF 204
Query: 90 LLMDTNAQLWYIVREYISNSQHDSMLAYERGINQADLISFLLELSFHVAGEAYNLKTLSE 149
LL+DT+AQLWY + +Y+ +Q RG++ +++SFL +LSF G+ Y+++ +S+
Sbjct: 205 LLLDTSAQLWYFMLQYLQTAQ-------SRGMDLVEILSFLFQLSFSTLGKDYSVEGMSD 257
Query: 150 IQRSMIKDFADLGLVKLQQGRKESWFIPT-IADSL-------------------ETNFRM 189
+ ++ + GLV Q+ RK + PT +A +L ETN+R+
Sbjct: 258 SLLNFLQHLREFGLV-FQRKRKSRRYYPTRLAINLSSGVSGAGGSVHQPGFIVVETNYRL 316
Query: 190 YAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKESLYNAVENGLTAEQ------QNAHPR 243
YAY+ S+L ++ LFS++ Y+ PN++V +T+ES+ A+ +G+TA+Q AHP
Sbjct: 317 YAYTESELQIALIALFSEMLYRFPNMVVAQVTRESVQQAIASGITAQQIIHFLRTRAHPV 376
Query: 244 VADRIPSVLENVCDQIRLWESDLNRVEMTPAHYYDEFPSRED 285
+ + P + + DQIRLWE + +R+ T Y++F S+ D
Sbjct: 377 MLKQTPVLPPTITDQIRLWELERDRLRFTEGVLYNQFLSQVD 418
>gi|189205068|ref|XP_001938869.1| RNA polymerase II transcription factor B subunit 2 [Pyrenophora
tritici-repentis Pt-1C-BFP]
gi|187985968|gb|EDU51456.1| RNA polymerase II transcription factor B subunit 2 [Pyrenophora
tritici-repentis Pt-1C-BFP]
Length = 482
Score = 149 bits (377), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 94/303 (31%), Positives = 152/303 (50%), Gaps = 56/303 (18%)
Query: 28 TLEDLEAYAIGQWERFLLQLISSAQAERSINFC-----SSTMKVFQRGLLIQRDKEAPRL 82
++E L+ Y+ QWE L L+S A N ST + G L++ +PR+
Sbjct: 136 SVEFLDEYSRAQWEGILYYLVSGAAGLGKDNISRAEVSPSTKTLLNTGDLVRTIHGSPRI 195
Query: 83 TESGFQFLLMDTNAQLWYIVREYISNSQHDSMLAYERGINQADLISFLLELSFHVAGEAY 142
T+ GF F+L +TNAQ+W ++ Y+ + E G+++ ++++FL L G+ Y
Sbjct: 196 TKDGFSFVLQETNAQVWSLLIIYLK-------VTNELGMSETEVLAFLFMLGSLELGQDY 248
Query: 143 NLKTLSEIQRSMIKDFADLGLVKLQQGRKESWFIPT------IADS-------------- 182
+ TLS Q M+ D + +GL+ + + F PT +DS
Sbjct: 249 STSTLSPTQLRMLDDLSSMGLI-YRSDKNARTFYPTRLATTLTSDSGSAMSASSNDIAQA 307
Query: 183 -----------------LETNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKESL 225
+ETN+R+YAY+ S + IL LF+K++++ PNL+ G +TKES+
Sbjct: 308 GQGNAGPSATANKGFIIIETNYRLYAYTNSLIQIAILSLFTKLQHRFPNLVSGKLTKESV 367
Query: 226 YNAVENGLTAEQ------QNAHPRVADRIPSVLENVCDQIRLWESDLNRVEMTPAHYYDE 279
+ AV++G+T+ Q AHP++ +P + V DQIRLWE + RVE TP + E
Sbjct: 368 HKAVQSGITSAQIISYLTTYAHPQMQKTVPYIPPTVMDQIRLWEYEGERVETTPGYLMRE 427
Query: 280 FPS 282
F S
Sbjct: 428 FSS 430
>gi|47059175|ref|NP_997666.1| general transcription factor II H, polypeptide 4 [Rattus
norvegicus]
gi|46237651|emb|CAE84027.1| general transcription factor II H, polypeptide 4 [Rattus
norvegicus]
gi|117558335|gb|AAI27470.1| General transcription factor II H, polypeptide 4 [Rattus
norvegicus]
Length = 463
Score = 149 bits (377), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 99/326 (30%), Positives = 168/326 (51%), Gaps = 56/326 (17%)
Query: 29 LEDLEAYAIGQWERFLLQLISSAQAERSINFCSSTMKVFQRGLLIQRDK-EAPRLTESGF 87
+ L+ YA +WE L ++ S A S + + Q GL+ + E P +T +GF
Sbjct: 146 VPSLDKYAEERWEVVLHFMVGSPSAAVSQDLAQ---LLSQAGLMKSTEPGEPPCITSAGF 202
Query: 88 QFLLMDTNAQLWYIVREYISNSQHDSMLAYERGINQADLISFLLELSFHVAGEAYNLKTL 147
QFLL+DT AQLWY + +Y+ +Q RG++ +++SFL +LSF G+ Y+++ +
Sbjct: 203 QFLLLDTPAQLWYFMLQYLQTAQ-------SRGMDLVEILSFLFQLSFSTLGKDYSVEGM 255
Query: 148 SEIQRSMIKDFADLGLVKLQQGRKESWFIPT-IADSL-------------------ETNF 187
S+ + ++ + GLV Q+ RK + PT +A +L ETN+
Sbjct: 256 SDSLLNFLQHLREFGLV-FQRKRKSRRYYPTRLAINLSSGVSGAGGTVHQPGFIVVETNY 314
Query: 188 RMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKESLYNAVENGLTAEQ------QNAH 241
R+YAY+ S+L ++ LFS++ Y+ PN++V +T+ES+ A+ +G+TA+Q AH
Sbjct: 315 RLYAYTESELQIALIALFSEMLYRFPNMVVAQVTRESVQQAIASGITAQQIIHFLRTRAH 374
Query: 242 PRVADRIPSVLENVCDQIRLWESDLNRVEMTPAHYYDEFPSR------------------ 283
P + + P + + DQIRLWE + +R+ T Y++F S+
Sbjct: 375 PVMLKQTPVLPPTITDQIRLWELERDRLRFTEGVLYNQFLSQVDFELLLAHARELGVLVF 434
Query: 284 EDSKKMRLVVNAEIHMHMREFLRGQN 309
E+S K +VV H ++ F + Q
Sbjct: 435 ENSAKRLMVVTPAGHSDVKRFWKRQK 460
>gi|451847848|gb|EMD61155.1| hypothetical protein COCSADRAFT_97372 [Cochliobolus sativus ND90Pr]
Length = 482
Score = 149 bits (377), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 95/302 (31%), Positives = 154/302 (50%), Gaps = 54/302 (17%)
Query: 28 TLEDLEAYAIGQWERFLLQLISSAQ--AERSIN---FCSSTMKVFQRGLLIQRDKEAPRL 82
++E L+ Y+ QWE L L+S A ++ SI+ T K+ G L++ +PR+
Sbjct: 136 SIEFLDEYSRSQWEGILYYLVSGAAGLSKDSISRAEVGPGTKKLLHTGDLVRTIHGSPRI 195
Query: 83 TESGFQFLLMDTNAQLWYIVREYISNSQHDSMLAYERGINQADLISFLLELSFHVAGEAY 142
T+ GF F+L +TNAQ+W ++ Y+ + E G+++ +++SFL L G+ Y
Sbjct: 196 TKDGFSFVLQETNAQVWSLLIVYLK-------MTNELGMSETEVLSFLFMLGSLELGQDY 248
Query: 143 NLKTLSEIQRSMIKDFADLGLV--------------------------------KLQQGR 170
+ TLS Q M++D + +GLV + Q
Sbjct: 249 STSTLSATQLQMLEDLSAMGLVYRSERNARTFYPTRLATTLTSDSGSAMSASSKDIAQAS 308
Query: 171 KESWFIPTIADS----LETNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKESLY 226
+ PT A+ +ETN+R+YAY+ S + IL LF+K++++ PNL+ G +TKES++
Sbjct: 309 TSTTGPPTAANKGFIIIETNYRLYAYTNSLIQIAILSLFTKLQHRFPNLVSGKLTKESVH 368
Query: 227 NAVENGLTAEQ------QNAHPRVADRIPSVLENVCDQIRLWESDLNRVEMTPAHYYDEF 280
AV+ G+T+ Q AHP++ +P + V DQIRLWE + RVE T + EF
Sbjct: 369 KAVQAGITSAQIISYLTTYAHPQMQKTVPYIPPTVMDQIRLWEYEGERVETTTGYLMREF 428
Query: 281 PS 282
S
Sbjct: 429 GS 430
>gi|338718559|ref|XP_003363845.1| PREDICTED: general transcription factor IIH subunit 4 [Equus
caballus]
Length = 463
Score = 149 bits (377), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 99/326 (30%), Positives = 168/326 (51%), Gaps = 56/326 (17%)
Query: 29 LEDLEAYAIGQWERFLLQLISSAQAERSINFCSSTMKVFQRGLLIQRDK-EAPRLTESGF 87
+ L+ YA +WE L ++ S A S + + Q GL+ + E P +T +GF
Sbjct: 146 VPSLDKYAEERWEVVLHFMVGSPSAAVSQDLAQ---LLSQAGLMKSTEPGEPPCITSAGF 202
Query: 88 QFLLMDTNAQLWYIVREYISNSQHDSMLAYERGINQADLISFLLELSFHVAGEAYNLKTL 147
QFLL+DT AQLWY + +Y+ +Q RG++ +++SFL +LSF G+ Y+++ +
Sbjct: 203 QFLLLDTPAQLWYFMLQYLQTAQ-------SRGMDLVEILSFLFQLSFSTLGKDYSVEGM 255
Query: 148 SEIQRSMIKDFADLGLVKLQQGRKESWFIPT-IADSL-------------------ETNF 187
S+ + ++ + GLV Q+ RK + PT +A +L ETN+
Sbjct: 256 SDSLLNFLQHLREFGLV-FQRKRKSRRYYPTRLAINLSSGVSGAGGTAHQPGFIVVETNY 314
Query: 188 RMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKESLYNAVENGLTAEQ------QNAH 241
R+YAY+ S+L ++ LFS++ Y+ PN++V +T+ES+ A+ +G+TA+Q AH
Sbjct: 315 RLYAYTESELQIALIALFSEMLYRFPNMVVAQVTRESVQQAIASGITAQQIIHFLRTRAH 374
Query: 242 PRVADRIPSVLENVCDQIRLWESDLNRVEMTPAHYYDEFPSR------------------ 283
P + + P + + DQIRLWE + +R+ T Y++F S+
Sbjct: 375 PVMLKQTPVLPPTITDQIRLWELERDRLRFTEGVLYNQFLSQVDFELLLAHARELGVLVF 434
Query: 284 EDSKKMRLVVNAEIHMHMREFLRGQN 309
E+S K +VV H ++ F + Q
Sbjct: 435 ENSAKRLMVVTPAGHSDVKRFWKRQK 460
>gi|451996931|gb|EMD89397.1| hypothetical protein COCHEDRAFT_1141584 [Cochliobolus
heterostrophus C5]
Length = 482
Score = 149 bits (376), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 95/302 (31%), Positives = 154/302 (50%), Gaps = 54/302 (17%)
Query: 28 TLEDLEAYAIGQWERFLLQLISSAQ--AERSIN---FCSSTMKVFQRGLLIQRDKEAPRL 82
++E L+ Y+ QWE L L+S A ++ SI+ T K+ G L++ +PR+
Sbjct: 136 SIEFLDEYSRSQWEGILYYLVSGAAGLSKDSISRAEVGPGTKKLLHTGDLVRTIHGSPRI 195
Query: 83 TESGFQFLLMDTNAQLWYIVREYISNSQHDSMLAYERGINQADLISFLLELSFHVAGEAY 142
T+ GF F+L +TNAQ+W ++ Y+ + E G+++ +++SFL L G+ Y
Sbjct: 196 TKDGFSFVLQETNAQVWSLLIVYLK-------MTNELGMSETEVLSFLFMLGSLELGQDY 248
Query: 143 NLKTLSEIQRSMIKDFADLGLV--------------------------------KLQQGR 170
+ TLS Q M++D + +GLV + Q
Sbjct: 249 STSTLSATQLQMLEDLSAMGLVYRSDRNARTFYPTRLATTLTSDSGSAMSTSSNDIAQAS 308
Query: 171 KESWFIPTIADS----LETNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKESLY 226
+ PT A+ +ETN+R+YAY+ S + IL LF+K++++ PNL+ G +TKES++
Sbjct: 309 TSTTGPPTAANKGFIIIETNYRLYAYTNSLIQIAILSLFTKLQHRFPNLVSGKLTKESVH 368
Query: 227 NAVENGLTAEQ------QNAHPRVADRIPSVLENVCDQIRLWESDLNRVEMTPAHYYDEF 280
AV+ G+T+ Q AHP++ +P + V DQIRLWE + RVE T + EF
Sbjct: 369 KAVQAGITSAQIISYLTTYAHPQMQKTVPYIPPTVMDQIRLWEYEGERVETTTGYLMREF 428
Query: 281 PS 282
S
Sbjct: 429 GS 430
>gi|395831929|ref|XP_003789035.1| PREDICTED: general transcription factor IIH subunit 4 [Otolemur
garnettii]
Length = 463
Score = 149 bits (376), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 99/326 (30%), Positives = 168/326 (51%), Gaps = 56/326 (17%)
Query: 29 LEDLEAYAIGQWERFLLQLISSAQAERSINFCSSTMKVFQRGLLIQRDK-EAPRLTESGF 87
+ L+ YA +WE L ++ S A S + + Q GL+ + E P +T +GF
Sbjct: 146 VPSLDKYAEERWEVVLHFMVGSPSAAVSQDLAQ---LLSQAGLMKSTEPGEPPCITSAGF 202
Query: 88 QFLLMDTNAQLWYIVREYISNSQHDSMLAYERGINQADLISFLLELSFHVAGEAYNLKTL 147
QFLL+DT AQLWY + +Y+ +Q RG++ +++SFL +LSF G+ Y+++ +
Sbjct: 203 QFLLLDTPAQLWYFMLQYLQTAQ-------SRGMDLVEILSFLFQLSFSTLGKDYSVEGM 255
Query: 148 SEIQRSMIKDFADLGLVKLQQGRKESWFIPT-IADSL-------------------ETNF 187
S+ + ++ + GLV Q+ RK + PT +A +L ETN+
Sbjct: 256 SDSLLNFLQHLREFGLV-FQRKRKSRRYYPTRLAINLSSGVSGAGGTVHQPGFIVVETNY 314
Query: 188 RMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKESLYNAVENGLTAEQ------QNAH 241
R+YAY+ S+L ++ LFS++ Y+ PN++V +T+ES+ A+ +G+TA+Q AH
Sbjct: 315 RLYAYTESELQIALIALFSEMLYRFPNMVVAQVTRESVQQAIASGITAQQIIHFLRTRAH 374
Query: 242 PRVADRIPSVLENVCDQIRLWESDLNRVEMTPAHYYDEFPSR------------------ 283
P + + P + + DQIRLWE + +R+ T Y++F S+
Sbjct: 375 PVMLKQTPVLPPTITDQIRLWELERDRLRFTEGVLYNQFLSQVDFELLLAHARELGVLVF 434
Query: 284 EDSKKMRLVVNAEIHMHMREFLRGQN 309
E+S K +VV H ++ F + Q
Sbjct: 435 ENSAKRLMVVTPAGHSDVKRFWKRQK 460
>gi|4504201|ref|NP_001508.1| general transcription factor IIH subunit 4 [Homo sapiens]
gi|113865855|ref|NP_001038968.1| general transcription factor IIH subunit 4 [Pan troglodytes]
gi|114050799|ref|NP_001040607.1| general transcription factor IIH subunit 4 [Macaca mulatta]
gi|297677636|ref|XP_002816695.1| PREDICTED: general transcription factor IIH subunit 4 isoform 2
[Pongo abelii]
gi|332245940|ref|XP_003272109.1| PREDICTED: general transcription factor IIH subunit 4 [Nomascus
leucogenys]
gi|426352309|ref|XP_004043656.1| PREDICTED: general transcription factor IIH subunit 4 [Gorilla
gorilla gorilla]
gi|17380328|sp|Q92759.1|TF2H4_HUMAN RecName: Full=General transcription factor IIH subunit 4; AltName:
Full=Basic transcription factor 2 52 kDa subunit;
Short=BTF2 p52; AltName: Full=General transcription
factor IIH polypeptide 4; AltName: Full=TFIIH basal
transcription factor complex p52 subunit
gi|38503276|sp|P60027.1|TF2H4_PANTR RecName: Full=General transcription factor IIH subunit 4; AltName:
Full=Basic transcription factor 2 52 kDa subunit;
Short=BTF2 p52; AltName: Full=General transcription
factor IIH polypeptide 4; AltName: Full=TFIIH basal
transcription factor complex p52 subunit
gi|1514597|emb|CAA68870.1| transcription factor TFIIH [Homo sapiens]
gi|13436278|gb|AAH04935.1| General transcription factor IIH, polypeptide 4, 52kDa [Homo
sapiens]
gi|15277224|dbj|BAB63317.1| Transcription factor II H [Homo sapiens]
gi|16740884|gb|AAH16302.1| General transcription factor IIH, polypeptide 4, 52kDa [Homo
sapiens]
gi|21655317|gb|AAM64222.1| general transcription factor IIH, polypeptide 4 (52kD subunit)
[Homo sapiens]
gi|27544403|dbj|BAC54936.1| transcription factor II H [Homo sapiens]
gi|30583481|gb|AAP35985.1| general transcription factor IIH, polypeptide 4, 52kDa [Homo
sapiens]
gi|32127781|dbj|BAC78171.1| transcription factor II H [Pan troglodytes]
gi|55700798|dbj|BAD69753.1| general transcription factor IIH, polypeptide 4, 52kDa [Macaca
mulatta]
gi|60655839|gb|AAX32483.1| general transcription factor IIH polypeptide 4 [synthetic
construct]
gi|60655841|gb|AAX32484.1| general transcription factor IIH polypeptide 4 [synthetic
construct]
gi|86197966|dbj|BAE78622.1| general transcription factor IIH, polypeptide 4, 52kDa [Homo
sapiens]
gi|90960934|dbj|BAE92819.1| general transcription factor IIH, polypeptide 4 [Pan troglodytes]
gi|90960936|dbj|BAE92820.1| general transcription factor IIH, polypeptide 4 [Pan troglodytes]
gi|114306784|dbj|BAF31271.1| TFIIH protein [Homo sapiens]
gi|119623752|gb|EAX03347.1| general transcription factor IIH, polypeptide 4, 52kDa [Homo
sapiens]
gi|123992979|gb|ABM84091.1| general transcription factor IIH, polypeptide 4, 52kDa [synthetic
construct]
gi|123999907|gb|ABM87462.1| general transcription factor IIH, polypeptide 4, 52kDa [synthetic
construct]
gi|355561507|gb|EHH18139.1| General transcription factor IIH polypeptide 4, partial [Macaca
mulatta]
gi|355748409|gb|EHH52892.1| General transcription factor IIH polypeptide 4 [Macaca
fascicularis]
gi|380812138|gb|AFE77944.1| general transcription factor IIH subunit 4 [Macaca mulatta]
gi|380812140|gb|AFE77945.1| general transcription factor IIH subunit 4 [Macaca mulatta]
gi|383408563|gb|AFH27495.1| general transcription factor IIH subunit 4 [Macaca mulatta]
gi|410214852|gb|JAA04645.1| general transcription factor IIH, polypeptide 4, 52kDa [Pan
troglodytes]
gi|410250640|gb|JAA13287.1| general transcription factor IIH, polypeptide 4, 52kDa [Pan
troglodytes]
gi|410290944|gb|JAA24072.1| general transcription factor IIH, polypeptide 4, 52kDa [Pan
troglodytes]
gi|410352807|gb|JAA43007.1| general transcription factor IIH, polypeptide 4, 52kDa [Pan
troglodytes]
Length = 462
Score = 149 bits (376), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 99/326 (30%), Positives = 168/326 (51%), Gaps = 56/326 (17%)
Query: 29 LEDLEAYAIGQWERFLLQLISSAQAERSINFCSSTMKVFQRGLLIQRDK-EAPRLTESGF 87
+ L+ YA +WE L ++ S A S + + Q GL+ + E P +T +GF
Sbjct: 145 VPSLDKYAEERWEVVLHFMVGSPSAAVSQDLAQ---LLSQAGLMKSTEPGEPPCITSAGF 201
Query: 88 QFLLMDTNAQLWYIVREYISNSQHDSMLAYERGINQADLISFLLELSFHVAGEAYNLKTL 147
QFLL+DT AQLWY + +Y+ +Q RG++ +++SFL +LSF G+ Y+++ +
Sbjct: 202 QFLLLDTPAQLWYFMLQYLQTAQ-------SRGMDLVEILSFLFQLSFSTLGKDYSVEGM 254
Query: 148 SEIQRSMIKDFADLGLVKLQQGRKESWFIPT-IADSL-------------------ETNF 187
S+ + ++ + GLV Q+ RK + PT +A +L ETN+
Sbjct: 255 SDSLLNFLQHLREFGLV-FQRKRKSRRYYPTRLAINLSSGVSGAGGTVHQPGFIVVETNY 313
Query: 188 RMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKESLYNAVENGLTAEQ------QNAH 241
R+YAY+ S+L ++ LFS++ Y+ PN++V +T+ES+ A+ +G+TA+Q AH
Sbjct: 314 RLYAYTESELQIALIALFSEMLYRFPNMVVAQVTRESVQQAIASGITAQQIIHFLRTRAH 373
Query: 242 PRVADRIPSVLENVCDQIRLWESDLNRVEMTPAHYYDEFPSR------------------ 283
P + + P + + DQIRLWE + +R+ T Y++F S+
Sbjct: 374 PVMLKQTPVLPPTITDQIRLWELERDRLRFTEGVLYNQFLSQVDFELLLAHARELGVLVF 433
Query: 284 EDSKKMRLVVNAEIHMHMREFLRGQN 309
E+S K +VV H ++ F + Q
Sbjct: 434 ENSAKRLMVVTPAGHSDVKRFWKRQK 459
>gi|359320969|ref|XP_003639474.1| PREDICTED: general transcription factor IIH subunit 4-like [Canis
lupus familiaris]
Length = 463
Score = 149 bits (376), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 99/326 (30%), Positives = 168/326 (51%), Gaps = 56/326 (17%)
Query: 29 LEDLEAYAIGQWERFLLQLISSAQAERSINFCSSTMKVFQRGLLIQRDK-EAPRLTESGF 87
+ L+ YA +WE L ++ S A S + + Q GL+ + E P +T +GF
Sbjct: 146 VPSLDKYAEERWEVVLHFMVGSPSAAVSQDLAQ---LLSQAGLMKSTEPGEPPCITSAGF 202
Query: 88 QFLLMDTNAQLWYIVREYISNSQHDSMLAYERGINQADLISFLLELSFHVAGEAYNLKTL 147
QFLL+DT AQLWY + +Y+ +Q RG++ +++SFL +LSF G+ Y+++ +
Sbjct: 203 QFLLLDTPAQLWYFMLQYLQTAQ-------SRGMDLVEILSFLFQLSFSTLGKDYSVEGM 255
Query: 148 SEIQRSMIKDFADLGLVKLQQGRKESWFIPT-IADSL-------------------ETNF 187
S+ + ++ + GLV Q+ RK + PT +A +L ETN+
Sbjct: 256 SDSLLNFLQHLREFGLV-FQRKRKSRRYYPTRLAINLSSGVSGAGGTAHQPGFIIVETNY 314
Query: 188 RMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKESLYNAVENGLTAEQ------QNAH 241
R+YAY+ S+L ++ LFS++ Y+ PN++V +T+ES+ A+ +G+TA+Q AH
Sbjct: 315 RLYAYTESELQIALIALFSEMLYRFPNMVVAQVTRESVQQAIASGITAQQIIHFLRTRAH 374
Query: 242 PRVADRIPSVLENVCDQIRLWESDLNRVEMTPAHYYDEFPSR------------------ 283
P + + P + + DQIRLWE + +R+ T Y++F S+
Sbjct: 375 PVMLKQTPVLPPTITDQIRLWELERDRLRFTEGVLYNQFLSQVDFELLLAHARELGVLVF 434
Query: 284 EDSKKMRLVVNAEIHMHMREFLRGQN 309
E+S K +VV H ++ F + Q
Sbjct: 435 ENSAKRLMVVTPAGHSDVKRFWKRQK 460
>gi|330918142|ref|XP_003298106.1| hypothetical protein PTT_08708 [Pyrenophora teres f. teres 0-1]
gi|311328891|gb|EFQ93800.1| hypothetical protein PTT_08708 [Pyrenophora teres f. teres 0-1]
Length = 482
Score = 149 bits (376), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 94/303 (31%), Positives = 152/303 (50%), Gaps = 56/303 (18%)
Query: 28 TLEDLEAYAIGQWERFLLQLISSAQAERSINFC-----SSTMKVFQRGLLIQRDKEAPRL 82
++E L+ Y+ QWE L L+S A N ST + G L++ +PR+
Sbjct: 136 SVEFLDEYSRSQWEGILYYLVSGAAGLGKDNISRAEVSPSTKTLLNTGDLVRTIHGSPRI 195
Query: 83 TESGFQFLLMDTNAQLWYIVREYISNSQHDSMLAYERGINQADLISFLLELSFHVAGEAY 142
T+ GF F+L +TNAQ+W ++ Y+ + E G+++ ++++FL L G+ Y
Sbjct: 196 TKDGFSFVLQETNAQVWSLLIIYLK-------VTNELGMSETEVLAFLFMLGSLELGQDY 248
Query: 143 NLKTLSEIQRSMIKDFADLGLVKLQQGRKESWFIPT------IADS-------------- 182
+ TLS Q M+ D + +GL+ + + F PT +DS
Sbjct: 249 STSTLSPTQLRMLDDLSSMGLI-YRSDKNARTFYPTRLATTLTSDSGSAMSASSNDIAQA 307
Query: 183 -----------------LETNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKESL 225
+ETN+R+YAY+ S + IL LF+K++++ PNL+ G +TKES+
Sbjct: 308 GQGNAGPSAAANKGFIIIETNYRLYAYTNSLIQIAILSLFTKLQHRFPNLVSGKLTKESV 367
Query: 226 YNAVENGLTAEQ------QNAHPRVADRIPSVLENVCDQIRLWESDLNRVEMTPAHYYDE 279
+ AV++G+T+ Q AHP++ +P + V DQIRLWE + RVE TP + E
Sbjct: 368 HKAVQSGITSAQIISYLTTYAHPQMQKTVPYIPPTVMDQIRLWEYEGERVETTPGYLMRE 427
Query: 280 FPS 282
F S
Sbjct: 428 FSS 430
>gi|344307658|ref|XP_003422497.1| PREDICTED: general transcription factor IIH subunit 4 [Loxodonta
africana]
Length = 463
Score = 149 bits (376), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 99/326 (30%), Positives = 168/326 (51%), Gaps = 56/326 (17%)
Query: 29 LEDLEAYAIGQWERFLLQLISSAQAERSINFCSSTMKVFQRGLLIQRDK-EAPRLTESGF 87
+ L+ YA +WE L ++ S A S + + Q GL+ + E P +T +GF
Sbjct: 146 VPSLDKYAEERWEVVLHFMVGSPSAAVSQDLAQ---LLSQAGLMKSAEPGEPPCITSAGF 202
Query: 88 QFLLMDTNAQLWYIVREYISNSQHDSMLAYERGINQADLISFLLELSFHVAGEAYNLKTL 147
QFLL+DT AQLWY + +Y+ +Q RG++ +++SFL +LSF G+ Y+++ +
Sbjct: 203 QFLLLDTPAQLWYFMLQYLQTAQ-------SRGMDLVEILSFLFQLSFSTLGKDYSVEGM 255
Query: 148 SEIQRSMIKDFADLGLVKLQQGRKESWFIPT-IADSL-------------------ETNF 187
S+ + ++ + GLV Q+ RK + PT +A +L ETN+
Sbjct: 256 SDSLLNFLQHLREFGLV-FQRKRKSRRYYPTRLAINLSSGVSGAGGTAHQPGFIIVETNY 314
Query: 188 RMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKESLYNAVENGLTAEQ------QNAH 241
R+YAY+ S+L ++ LFS++ Y+ PN++V +T+ES+ A+ +G+TA+Q AH
Sbjct: 315 RLYAYTESELQIALIALFSEMLYRFPNMVVAQVTRESVQQAIASGITAQQIIHFLRTRAH 374
Query: 242 PRVADRIPSVLENVCDQIRLWESDLNRVEMTPAHYYDEFPSR------------------ 283
P + + P + + DQIRLWE + +R+ T Y++F S+
Sbjct: 375 PVMLKQTPVLPPTITDQIRLWELERDRLRFTEGVLYNQFLSQVDFELLLAHARELGVLVF 434
Query: 284 EDSKKMRLVVNAEIHMHMREFLRGQN 309
E+S K +VV H ++ F + Q
Sbjct: 435 ENSAKRLMVVTPAGHSDVKRFWKRQK 460
>gi|281337500|gb|EFB13084.1| hypothetical protein PANDA_018954 [Ailuropoda melanoleuca]
Length = 463
Score = 149 bits (376), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 99/326 (30%), Positives = 168/326 (51%), Gaps = 56/326 (17%)
Query: 29 LEDLEAYAIGQWERFLLQLISSAQAERSINFCSSTMKVFQRGLLIQRDK-EAPRLTESGF 87
+ L+ YA +WE L ++ S A S + + Q GL+ + E P +T +GF
Sbjct: 146 VPSLDKYAEERWEVVLHFMVGSPSAAVSQDLAQ---LLSQAGLMKSAEPGEPPCITSAGF 202
Query: 88 QFLLMDTNAQLWYIVREYISNSQHDSMLAYERGINQADLISFLLELSFHVAGEAYNLKTL 147
QFLL+DT AQLWY + +Y+ +Q RG++ +++SFL +LSF G+ Y+++ +
Sbjct: 203 QFLLLDTPAQLWYFMLQYLQTAQ-------SRGMDLVEILSFLFQLSFSTLGKDYSVEGM 255
Query: 148 SEIQRSMIKDFADLGLVKLQQGRKESWFIPT-IADSL-------------------ETNF 187
S+ + ++ + GLV Q+ RK + PT +A +L ETN+
Sbjct: 256 SDSLLNFLQHLREFGLV-FQRKRKSRRYYPTRLAINLSSGVSGAGGTAHQPGFIVVETNY 314
Query: 188 RMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKESLYNAVENGLTAEQ------QNAH 241
R+YAY+ S+L ++ LFS++ Y+ PN++V +T+ES+ A+ +G+TA+Q AH
Sbjct: 315 RLYAYTESELQIALIALFSEMLYRFPNMVVAQVTRESVQQAIASGITAQQIIHFLRTRAH 374
Query: 242 PRVADRIPSVLENVCDQIRLWESDLNRVEMTPAHYYDEFPSR------------------ 283
P + + P + + DQIRLWE + +R+ T Y++F S+
Sbjct: 375 PVMLKQTPVLPPTITDQIRLWELERDRLRFTEGVLYNQFLSQVDFELLLAHARELGVLVF 434
Query: 284 EDSKKMRLVVNAEIHMHMREFLRGQN 309
E+S K +VV H ++ F + Q
Sbjct: 435 ENSAKRLMVVTPAGHSDVKRFWKRQK 460
>gi|390594544|gb|EIN03954.1| transcription factor Tfb2 [Punctularia strigosozonata HHB-11173
SS5]
Length = 467
Score = 149 bits (376), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 93/284 (32%), Positives = 154/284 (54%), Gaps = 37/284 (13%)
Query: 30 EDLEAYAIGQWERFLLQLISSAQAERSINFCSSTMKVFQRGLLIQRDKEAPRLTESGFQF 89
+ L+A+A+ +WE L ++SS A + + + QR L+ P++T +GFQF
Sbjct: 147 DGLDAFALERWETILHFMVSSGTAHNPPRPSAGVLFLLQRSGLMGGGGN-PQITSAGFQF 205
Query: 90 LLMDTNAQLWYIVREYISNSQHDSMLAYERGINQADLISFLLELSFHVAGEAYNLKTLSE 149
LL + +AQLW ++ +Y+ +A ER ++ +++SF+ LS G Y+ + LS+
Sbjct: 206 LLHEPHAQLWELLLQYLR-------MAEERQMDLVEVLSFIFMLSTTELGREYSTENLSD 258
Query: 150 IQRSMIKDFADLGLVKLQQGRKESWFIPT-IADSL---------------------ETNF 187
Q++M++D D GL+ QQ F PT +A +L ETN+
Sbjct: 259 TQKAMLEDLRDYGLI-WQQKPTSKRFSPTRLATTLTSSSPPLPTSGSGVSEGFIVLETNY 317
Query: 188 RMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKESLYNAVENGLTAEQ------QNAH 241
R+YAY+ + L +L LF+ + + PNL+VG IT+ES+ A+++G++AEQ +AH
Sbjct: 318 RLYAYTDNPLQTAVLALFTTLRSRFPNLVVGQITRESVKRALQSGISAEQIISYLSTHAH 377
Query: 242 PRVADRIPSVLENVCDQIRLWESDLNRVEMTPAHYYDEFPSRED 285
P++ P + V DQIRLWE + NR++ Y EF S+ D
Sbjct: 378 PQMRKNNPLIPVTVQDQIRLWELEKNRLKSQEGFLYTEFASQGD 421
>gi|426250586|ref|XP_004019016.1| PREDICTED: general transcription factor IIH subunit 4 [Ovis aries]
Length = 463
Score = 149 bits (375), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 99/326 (30%), Positives = 168/326 (51%), Gaps = 56/326 (17%)
Query: 29 LEDLEAYAIGQWERFLLQLISSAQAERSINFCSSTMKVFQRGLLIQRDK-EAPRLTESGF 87
+ L+ YA +WE L ++ S A S + + Q GL+ + E P +T +GF
Sbjct: 146 VPSLDKYAEERWEVVLHFMVGSPSAAVSQDLAQ---LLSQAGLMKSAEPGEPPCITSAGF 202
Query: 88 QFLLMDTNAQLWYIVREYISNSQHDSMLAYERGINQADLISFLLELSFHVAGEAYNLKTL 147
QFLL+DT AQLWY + +Y+ +Q RG++ +++SFL +LSF G+ Y+++ +
Sbjct: 203 QFLLLDTPAQLWYFMLQYLQTAQ-------SRGMDLVEILSFLFQLSFSTLGKDYSVEGM 255
Query: 148 SEIQRSMIKDFADLGLVKLQQGRKESWFIPT-IADSL-------------------ETNF 187
S+ + ++ + GLV Q+ RK + PT +A +L ETN+
Sbjct: 256 SDSLLNFLQHLREFGLV-FQRKRKSRRYYPTRLAINLSSGVSGAGGTAHQPGFIVVETNY 314
Query: 188 RMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKESLYNAVENGLTAEQ------QNAH 241
R+YAY+ S+L ++ LFS++ Y+ PN++V +T+ES+ A+ +G+TA+Q AH
Sbjct: 315 RLYAYTESELQIALIALFSEMLYRFPNMVVAQVTRESVQQAIASGITAQQIIHFLRTRAH 374
Query: 242 PRVADRIPSVLENVCDQIRLWESDLNRVEMTPAHYYDEFPSR------------------ 283
P + + P + + DQIRLWE + +R+ T Y++F S+
Sbjct: 375 PVMLKQTPVLPPTITDQIRLWELERDRLRFTEGVLYNQFLSQVDFELLLAHARELGVLVF 434
Query: 284 EDSKKMRLVVNAEIHMHMREFLRGQN 309
E+S K +VV H ++ F + Q
Sbjct: 435 ENSAKRLMVVTPAGHSDVKRFWKRQK 460
>gi|345492819|ref|XP_001602702.2| PREDICTED: general transcription factor IIH subunit 4-like [Nasonia
vitripennis]
Length = 428
Score = 149 bits (375), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 97/319 (30%), Positives = 171/319 (53%), Gaps = 41/319 (12%)
Query: 2 NLWKHLINGGALPREPMPSGITARLPTLEDLEAYAIGQWERFLLQLISSAQAERSINFCS 61
NL L+ GGA I ++ + L++YA+ +WE L ++ S Q E +
Sbjct: 80 NLKIVLLGGGAPWTMSKQLEIDSKPRDIAFLDSYALERWECVLHYMVGSQQQE---GISA 136
Query: 62 STMKVFQRGLLIQRDKE--APRLTESGFQFLLMDTNAQLWYIVREYISNSQHDSMLAYER 119
+++ L++RD+E +P +T++GFQFLL+DT+AQ+WY + +Y+ + R
Sbjct: 137 DAVRILLHAGLMKRDEEDGSPVITQAGFQFLLLDTSAQVWYFILQYLDTVE-------AR 189
Query: 120 GINQADLISFLLELSFHVAGEAYNLKTLSEIQRSMIKDFADLGLVKLQQGRKESWFIPT- 178
G++ + ++FL +L+F G+ Y+ + +S+ ++ + GLV Q+ RK F PT
Sbjct: 190 GLDLVECLTFLFQLNFSTLGKDYSTQGMSDGLLMFLQHLREFGLV-YQRKRKAGRFYPTR 248
Query: 179 ----IADS----------------LETNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVG 218
IA +ETN+R+YAY+ S L ++ LF ++ Y+ PNL+V
Sbjct: 249 LALNIATGQDKPISRDLEKERFVIVETNYRVYAYTNSNLQVALIGLFCELLYRFPNLVVA 308
Query: 219 AITKESLYNAVENGLTAEQ------QNAHPRVADRIPSVL-ENVCDQIRLWESDLNRVEM 271
+T++S+ A+++G+TA Q Q+AH ++ D P L + DQI+LWE++ NR
Sbjct: 309 ILTRDSVRAALKSGITAVQIVGYLNQHAHNKMIDPGPPTLPPTIVDQIKLWENERNRFIF 368
Query: 272 TPAHYYDEFPSREDSKKMR 290
+ Y +F S+ D + +R
Sbjct: 369 SEGVLYSQFHSQIDFEVLR 387
>gi|155371845|ref|NP_001094527.1| general transcription factor IIH subunit 4 [Bos taurus]
gi|148878127|gb|AAI46241.1| GTF2H4 protein [Bos taurus]
gi|296474219|tpg|DAA16334.1| TPA: general transcription factor IIH, polypeptide 4, 52kDa [Bos
taurus]
Length = 463
Score = 149 bits (375), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 99/324 (30%), Positives = 167/324 (51%), Gaps = 56/324 (17%)
Query: 31 DLEAYAIGQWERFLLQLISSAQAERSINFCSSTMKVFQRGLLIQRDK-EAPRLTESGFQF 89
L+ YA +WE L ++ S A S + + Q GL+ + E P +T +GFQF
Sbjct: 148 SLDKYAEERWEVVLHFMVGSPSAAVSQDLAQ---LLSQAGLMKSAEPGEPPCITSAGFQF 204
Query: 90 LLMDTNAQLWYIVREYISNSQHDSMLAYERGINQADLISFLLELSFHVAGEAYNLKTLSE 149
LL+DT AQLWY + +Y+ +Q RG++ +++SFL +LSF G+ Y+++ +S+
Sbjct: 205 LLLDTPAQLWYFMLQYLQTAQ-------SRGMDLVEILSFLFQLSFSTLGKDYSVEGMSD 257
Query: 150 IQRSMIKDFADLGLVKLQQGRKESWFIPT-IADSL-------------------ETNFRM 189
+ ++ + GLV Q+ RK + PT +A +L ETN+R+
Sbjct: 258 SLLNFLQHLREFGLV-FQRKRKSRRYYPTRLAINLSSGVSGAGGTAHQPGFIVVETNYRL 316
Query: 190 YAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKESLYNAVENGLTAEQ------QNAHPR 243
YAY+ S+L ++ LFS++ Y+ PN++V +T+ES+ A+ +G+TA+Q AHP
Sbjct: 317 YAYTESELQIALIALFSEMLYRFPNMVVAQVTRESVQQAIASGITAQQIIHFLRTRAHPV 376
Query: 244 VADRIPSVLENVCDQIRLWESDLNRVEMTPAHYYDEFPSR------------------ED 285
+ + P + + DQIRLWE + +R+ T Y++F S+ E+
Sbjct: 377 MLKQTPVLPPTITDQIRLWELERDRLRFTEGVLYNQFLSQVDFELLLAHARELGVLMFEN 436
Query: 286 SKKMRLVVNAEIHMHMREFLRGQN 309
S K +VV H ++ F + Q
Sbjct: 437 SAKRLMVVTPAGHSDVKRFWKRQK 460
>gi|440896165|gb|ELR48176.1| General transcription factor IIH subunit 4 [Bos grunniens mutus]
Length = 463
Score = 149 bits (375), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 99/324 (30%), Positives = 167/324 (51%), Gaps = 56/324 (17%)
Query: 31 DLEAYAIGQWERFLLQLISSAQAERSINFCSSTMKVFQRGLLIQRDK-EAPRLTESGFQF 89
L+ YA +WE L ++ S A S + + Q GL+ + E P +T +GFQF
Sbjct: 148 SLDKYAEERWEVVLHFMVGSPSAAVSQDLAQ---LLSQAGLMKSAEPGEPPCITSAGFQF 204
Query: 90 LLMDTNAQLWYIVREYISNSQHDSMLAYERGINQADLISFLLELSFHVAGEAYNLKTLSE 149
LL+DT AQLWY + +Y+ +Q RG++ +++SFL +LSF G+ Y+++ +S+
Sbjct: 205 LLLDTPAQLWYFMLQYLQTAQ-------SRGMDLVEILSFLFQLSFSTLGKDYSVEGMSD 257
Query: 150 IQRSMIKDFADLGLVKLQQGRKESWFIPT-IADSL-------------------ETNFRM 189
+ ++ + GLV Q+ RK + PT +A +L ETN+R+
Sbjct: 258 SLLNFLQHLREFGLV-FQRKRKSRRYYPTRLAINLSSGVSGAGGTAHQPGFIVVETNYRL 316
Query: 190 YAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKESLYNAVENGLTAEQ------QNAHPR 243
YAY+ S+L ++ LFS++ Y+ PN++V +T+ES+ A+ +G+TA+Q AHP
Sbjct: 317 YAYTESELQIALIALFSEMLYRFPNMVVAQVTRESVQQAIASGITAQQIIHFLRTRAHPV 376
Query: 244 VADRIPSVLENVCDQIRLWESDLNRVEMTPAHYYDEFPSR------------------ED 285
+ + P + + DQIRLWE + +R+ T Y++F S+ E+
Sbjct: 377 MLKQTPVLPPTITDQIRLWELERDRLRFTEGVLYNQFLSQVDFELLLAHARELGVLVFEN 436
Query: 286 SKKMRLVVNAEIHMHMREFLRGQN 309
S K +VV H ++ F + Q
Sbjct: 437 SAKRLMVVTPAGHSDVKRFWKRQK 460
>gi|62896773|dbj|BAD96327.1| general transcription factor IIH, polypeptide 4, 52kDa variant
[Homo sapiens]
Length = 462
Score = 149 bits (375), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 99/326 (30%), Positives = 167/326 (51%), Gaps = 56/326 (17%)
Query: 29 LEDLEAYAIGQWERFLLQLISSAQAERSINFCSSTMKVFQRGLLIQRDK-EAPRLTESGF 87
+ L+ YA +WE L ++ S A S + + Q GL+ + E P +T +GF
Sbjct: 145 VPSLDKYAEERWEVVLHFMVGSPSAAVSQDLAQ---LLSQAGLMKSTEPGEPPCITSAGF 201
Query: 88 QFLLMDTNAQLWYIVREYISNSQHDSMLAYERGINQADLISFLLELSFHVAGEAYNLKTL 147
QFLL+DT AQLWY + +Y+ +Q RG++ +++SFL +LSF G+ Y+++ +
Sbjct: 202 QFLLLDTPAQLWYFMLQYLQTAQ-------SRGMDLVEILSFLFQLSFSTLGKDYSVEGM 254
Query: 148 SEIQRSMIKDFADLGLVKLQQGRKESWFIPT-IADSL-------------------ETNF 187
S+ + ++ + GLV Q+ RK + PT +A +L ETN+
Sbjct: 255 SDSLLNFLQHLREFGLV-FQRKRKSRRYYPTRLAINLSSGVSGAGGTVHQPGFIVVETNY 313
Query: 188 RMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKESLYNAVENGLTAEQ------QNAH 241
R+YAY+ S+L ++ LFS++ Y+ PN++V +T+ES+ A+ +G+TA+Q AH
Sbjct: 314 RLYAYTESELQIALIALFSEMLYRFPNMVVAQVTRESVQQAIASGITAQQIIHFLRTRAH 373
Query: 242 PRVADRIPSVLENVCDQIRLWESDLNRVEMTPAHYYDEFPSR------------------ 283
P + + P + + DQIRLWE +R+ T Y++F S+
Sbjct: 374 PVMLKQTPVLPPTITDQIRLWELGRDRLRFTEGVLYNQFLSQVDFELLLAHARELGVLVF 433
Query: 284 EDSKKMRLVVNAEIHMHMREFLRGQN 309
E+S K +VV H ++ F + Q
Sbjct: 434 ENSAKRLMVVTPAGHSDVKRFWKRQK 459
>gi|410958682|ref|XP_003985944.1| PREDICTED: general transcription factor IIH subunit 4 [Felis catus]
Length = 463
Score = 148 bits (374), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 99/326 (30%), Positives = 168/326 (51%), Gaps = 56/326 (17%)
Query: 29 LEDLEAYAIGQWERFLLQLISSAQAERSINFCSSTMKVFQRGLLIQRDK-EAPRLTESGF 87
+ L+ YA +WE L ++ S A S + + Q GL+ + E P +T +GF
Sbjct: 146 VPSLDKYAEERWEVVLHFMVGSPSAAVSQDLAQ---LLSQAGLMKSTEPGEPPCITSAGF 202
Query: 88 QFLLMDTNAQLWYIVREYISNSQHDSMLAYERGINQADLISFLLELSFHVAGEAYNLKTL 147
QFLL+DT AQLWY + +Y+ +Q RG++ +++SFL +LSF G+ Y+++ +
Sbjct: 203 QFLLLDTPAQLWYFMLQYLQTAQ-------SRGMDLVEILSFLFQLSFSTLGKDYSVEGM 255
Query: 148 SEIQRSMIKDFADLGLVKLQQGRKESWFIPT-IADSL-------------------ETNF 187
S+ + ++ + GLV Q+ RK + PT +A +L ETN+
Sbjct: 256 SDSLLNFLQHLREFGLV-FQRKRKSRRYYPTRLAINLSSGVSGAGGTAHQPGFIVVETNY 314
Query: 188 RMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKESLYNAVENGLTAEQ------QNAH 241
R+YAY+ S+L ++ LFS++ Y+ PN++V +T+ES+ A+ +G+TA+Q AH
Sbjct: 315 RLYAYTESELQIALIALFSEMLYRFPNMVVAQVTRESVQQAIASGITAQQIIHFLRTRAH 374
Query: 242 PRVADRIPSVLENVCDQIRLWESDLNRVEMTPAHYYDEFPSR------------------ 283
P + + P + + DQIRLWE + +R+ T Y++F S+
Sbjct: 375 PVMLKQSPVLPPTITDQIRLWELERDRLRFTEGVLYNQFLSQVDFELLLAHARELGVLVF 434
Query: 284 EDSKKMRLVVNAEIHMHMREFLRGQN 309
E+S K +VV H ++ F + Q
Sbjct: 435 ENSAKRLMVVTPAGHSDVKRFWKRQK 460
>gi|351713119|gb|EHB16038.1| General transcription factor IIH subunit 4 [Heterocephalus glaber]
Length = 463
Score = 148 bits (374), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 99/324 (30%), Positives = 166/324 (51%), Gaps = 56/324 (17%)
Query: 31 DLEAYAIGQWERFLLQLISSAQAERSINFCSSTMKVFQRGLLIQRDK-EAPRLTESGFQF 89
L+ YA +WE L ++ S A S + + Q GL+ + E P +T +GFQF
Sbjct: 148 SLDKYAEERWEVVLHFMVGSPSAAVSQDLAQ---LLSQAGLMKSAEPGEPPCITSAGFQF 204
Query: 90 LLMDTNAQLWYIVREYISNSQHDSMLAYERGINQADLISFLLELSFHVAGEAYNLKTLSE 149
LL+DT AQLWY + +Y+ +Q RG++ +++SFL +LSF G Y+++ +S+
Sbjct: 205 LLLDTPAQLWYFMLQYLQTAQ-------SRGMDLVEILSFLFQLSFSTLGRDYSVEGMSD 257
Query: 150 IQRSMIKDFADLGLVKLQQGRKESWFIPT-IADSL-------------------ETNFRM 189
+ ++ + GLV Q+ RK + PT +A +L ETN+R+
Sbjct: 258 SLLNFLQHLREFGLV-FQRKRKSRRYYPTRLAINLSSGVSGAGGSVHQPGFIVVETNYRL 316
Query: 190 YAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKESLYNAVENGLTAEQ------QNAHPR 243
YAY+ S+L ++ LFS++ Y+ PN++V +T+ES+ A+ +G+TA+Q AHP
Sbjct: 317 YAYTESELQVALIALFSEMLYRFPNVVVAQVTRESVQQAIGSGITAQQIIHFLRTRAHPV 376
Query: 244 VADRIPSVLENVCDQIRLWESDLNRVEMTPAHYYDEFPSR------------------ED 285
+ + P + + DQIRLWE + +R+ T Y++F S+ E+
Sbjct: 377 MLKQTPVLPPTITDQIRLWELERDRLRFTEGVLYNQFLSQVDFELLLAHARELGVLVFEN 436
Query: 286 SKKMRLVVNAEIHMHMREFLRGQN 309
S K +VV H ++ F + Q
Sbjct: 437 SAKRLMVVTPAGHSDVKRFWKRQK 460
>gi|6754094|ref|NP_034494.1| general transcription factor IIH subunit 4 [Mus musculus]
gi|18202124|sp|O70422.1|TF2H4_MOUSE RecName: Full=General transcription factor IIH subunit 4; AltName:
Full=Basic transcription factor 2 52 kDa subunit;
Short=BTF2 p52; AltName: Full=General transcription
factor IIH polypeptide 4; AltName: Full=TFIIH basal
transcription factor complex p52 subunit
gi|2997755|gb|AAC08594.1| TFIIH transcription/DNA repair factor p52 subunit [Mus musculus]
gi|15215027|gb|AAH12638.1| Gtf2h4 protein [Mus musculus]
gi|26348003|dbj|BAC37650.1| unnamed protein product [Mus musculus]
gi|74194835|dbj|BAE26009.1| unnamed protein product [Mus musculus]
gi|74222199|dbj|BAE26910.1| unnamed protein product [Mus musculus]
Length = 463
Score = 148 bits (373), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 99/326 (30%), Positives = 168/326 (51%), Gaps = 56/326 (17%)
Query: 29 LEDLEAYAIGQWERFLLQLISSAQAERSINFCSSTMKVFQRGLLIQRDK-EAPRLTESGF 87
+ L+ YA +WE L ++ S A S + + Q GL+ + E P +T +GF
Sbjct: 146 VPSLDKYAEERWEVVLHFMVGSPSAAVSQDLAQ---LLSQAGLMKSTEPGEPPCITSAGF 202
Query: 88 QFLLMDTNAQLWYIVREYISNSQHDSMLAYERGINQADLISFLLELSFHVAGEAYNLKTL 147
QFLL+DT AQLWY + +Y+ +Q RG++ +++SFL +LSF G+ Y+++ +
Sbjct: 203 QFLLLDTPAQLWYFMLQYLQTAQ-------SRGMDLVEILSFLFQLSFSTLGKDYSVEGM 255
Query: 148 SEIQRSMIKDFADLGLVKLQQGRKESWFIPT-IADSL-------------------ETNF 187
S+ + ++ + GLV Q+ RK + PT +A +L ETN+
Sbjct: 256 SDSLLNFLQHLREFGLV-FQRKRKSRRYYPTRLAINLSSGVSGAGGTVHQPGFIVVETNY 314
Query: 188 RMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKESLYNAVENGLTAEQ------QNAH 241
R+YAY+ S+L ++ LFS++ Y+ PN++V +T+ES+ A+ +G+TA+Q AH
Sbjct: 315 RLYAYTESELQIALIALFSEMLYRFPNMVVAQVTRESVQQAIASGITAQQIIHFLRTRAH 374
Query: 242 PRVADRIPSVLENVCDQIRLWESDLNRVEMTPAHYYDEFPSR------------------ 283
P + + P + + DQIRLWE + +R+ T Y++F S+
Sbjct: 375 PVMLKQNPVLPPTITDQIRLWELERDRLRFTEGVLYNQFLSQVDFELLLAHARELGVLVF 434
Query: 284 EDSKKMRLVVNAEIHMHMREFLRGQN 309
E+S K +VV H ++ F + Q
Sbjct: 435 ENSAKRLMVVTPAGHSDVKRFWKRQK 460
>gi|307177222|gb|EFN66420.1| General transcription factor IIH subunit 4 [Camponotus floridanus]
Length = 467
Score = 148 bits (373), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 90/289 (31%), Positives = 163/289 (56%), Gaps = 41/289 (14%)
Query: 32 LEAYAIGQWERFLLQLISSAQAERSINFCSSTMKVFQRGLLIQRDKE--APRLTESGFQF 89
L++YA+ +WE L ++ S Q E + +++ L++RD+ +P +T++GFQF
Sbjct: 149 LDSYALERWECVLHYMVGSQQQE---GISADAVRILLHAGLMKRDEADGSPIITQAGFQF 205
Query: 90 LLMDTNAQLWYIVREYISNSQHDSMLAYERGINQADLISFLLELSFHVAGEAYNLKTLSE 149
LL+DT +Q+WY + +Y+ D++ A RG++ + ++FL +L+F G+ Y+ + +SE
Sbjct: 206 LLLDTASQVWYFILQYL-----DTIEA--RGLDLVECLTFLFQLNFSTLGKDYSTEGMSE 258
Query: 150 IQRSMIKDFADLGLVKLQQGRKESWFIPT-----IADS----------------LETNFR 188
+ ++ + GLV Q+ RK F PT IA +ETN+R
Sbjct: 259 GLLTFLQHLREFGLV-YQRKRKAGRFYPTRLALNIATGENKPLAKDTDKEGYIVVETNYR 317
Query: 189 MYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKESLYNAVENGLTAE------QQNAHP 242
+YAY+ S L +L LF ++ Y+ PN++V +T++S+ A+++G+TA QQ+ H
Sbjct: 318 VYAYTNSNLQVALLGLFCEMLYRFPNVVVSILTRDSIRQALKSGITASQIVGYLQQHVHS 377
Query: 243 RVADRIPSVL-ENVCDQIRLWESDLNRVEMTPAHYYDEFPSREDSKKMR 290
++ +R P +L + DQI+LWE++ NR + Y +F S+ D + +R
Sbjct: 378 KMIERGPPILPPTIVDQIKLWENERNRFLFSEGVLYSQFLSQTDFEVLR 426
>gi|403417620|emb|CCM04320.1| predicted protein [Fibroporia radiculosa]
Length = 472
Score = 147 bits (372), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 94/291 (32%), Positives = 147/291 (50%), Gaps = 39/291 (13%)
Query: 27 PTLEDLEAYAIGQWERFLLQLISSAQAERSINFCSSTMKVFQR-GLLIQRDKEAPRLTES 85
P + L+AYA+ +WE L ++SS + + QR GL+ A ++T S
Sbjct: 143 PNINTLDAYALERWETILHYMVSSGTGHYPTRPSQEVLFLLQRSGLMTNAHGGALQITSS 202
Query: 86 GFQFLLMDTNAQLWYIVREYISNSQHDSMLAYERGINQADLISFLLELSFHVAGEAYNLK 145
GFQFLL +AQLW ++ +Y+ + ER ++ D++SFLL LS G Y+ +
Sbjct: 203 GFQFLLHSPHAQLWELLVQYL-------YMVEERQMDLVDVLSFLLMLSTMELGREYSTE 255
Query: 146 TLSEIQRSMIKDFADLGLVKLQQGRKESWFIPTIADS----------------------- 182
L+ Q +M+ D + GLV Q + +A +
Sbjct: 256 NLTATQTAMLTDLRNYGLVWQQSPSSRRFSPSRLATTLTSSSSPLPTSQNSGTGPHGEGF 315
Query: 183 --LETNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKESLYNAVENGLTAEQ--- 237
LETN+R+YAY+ + L +L LF ++ + PNL++GAIT+ES+ A+ NG+TA+Q
Sbjct: 316 IVLETNYRIYAYTDNPLQIAVLNLFVTLKSRFPNLVIGAITRESVKKALANGITADQIIS 375
Query: 238 ---QNAHPRVADRIPSVLENVCDQIRLWESDLNRVEMTPAHYYDEFPSRED 285
+AHP++ P + V DQIRLWE + NRV+ + Y F S+ D
Sbjct: 376 YLTAHAHPQMHKNKPLLPVTVQDQIRLWELERNRVKSEEGYLYTSFASQAD 426
>gi|299750117|ref|XP_001836551.2| transcription factor TFIIH complex subunit Tfb2 [Coprinopsis
cinerea okayama7#130]
gi|298408751|gb|EAU85259.2| transcription factor TFIIH complex subunit Tfb2 [Coprinopsis
cinerea okayama7#130]
Length = 403
Score = 147 bits (372), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 89/290 (30%), Positives = 151/290 (52%), Gaps = 39/290 (13%)
Query: 27 PTLEDLEAYAIGQWERFLLQLISSAQAERSINFCSSTMKVFQRGLLIQRDKEAPRLTESG 86
P++ L+AYA+ +WE L ++SS +R + + L+ +A ++ +G
Sbjct: 76 PSIAALDAYALERWETILHYMVSSGSGQRPTEPSPGVRFLLKTSGLMNEIHDALHISSAG 135
Query: 87 FQFLLMDTNAQLWYIVREYISNSQHDSMLAYERGINQADLISFLLELSFHVAGEAYNLKT 146
FQFLL + QLW+++ +Y+ LA +R ++ D++SF LS G Y+++
Sbjct: 136 FQFLLHSPHEQLWHLLLQYLQ-------LAEQRRMDLVDVLSFFFMLSTMELGREYSVQN 188
Query: 147 LSEIQRSMIKDFADLGLVKLQQGRKESWFIPTIADS------------------------ 182
L++ Q +M++D D GL+ Q+ + F PT +
Sbjct: 189 LTKTQSAMLEDLRDYGLI-WQRKQTSKRFSPTRLSTTLTSSSPPLPSTSGASSGPQEGFI 247
Query: 183 -LETNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKESLYNAVENGLTAEQ---- 237
LETN+R+YAY+ + L +L LF+ ++Y+ PNL+VG+IT+ES+ A+ NG++A+Q
Sbjct: 248 ILETNYRIYAYTDNPLQTAVLSLFASLKYRFPNLVVGSITRESVKKALLNGISADQIISY 307
Query: 238 --QNAHPRVADRIPSVLENVCDQIRLWESDLNRVEMTPAHYYDEFPSRED 285
+AHP + P + V DQIRLWE + NR++ Y F S+ D
Sbjct: 308 LITHAHPNMRKNNPLLPVTVQDQIRLWELEKNRLKSREGFLYTAFASQAD 357
>gi|409077631|gb|EKM77996.1| hypothetical protein AGABI1DRAFT_114851 [Agaricus bisporus var.
burnettii JB137-S8]
gi|426198975|gb|EKV48900.1| hypothetical protein AGABI2DRAFT_191077 [Agaricus bisporus var.
bisporus H97]
Length = 467
Score = 147 bits (371), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 105/335 (31%), Positives = 172/335 (51%), Gaps = 60/335 (17%)
Query: 27 PTLEDLEAYAIGQWERFLLQLISSAQAERSINFCSSTMKVFQRGLLIQRDKEAP-RLTES 85
P+++ L+++A+ +WE L ++SS ++ + + QR L+ P ++T S
Sbjct: 138 PSIKTLDSFALERWETILHYMVSSGTGQQPAKPSQGVLFLLQRSSLMSSFHGGPLQITSS 197
Query: 86 GFQFLLMDTNAQLWYIVREYISNSQHDSMLAYERGINQADLISFLLELSFHVAGEAYNLK 145
GFQFLL +AQLW ++ +Y+ LA ER ++ +++ FL LS G Y +
Sbjct: 198 GFQFLLHSPHAQLWDLLLQYLH-------LAQERQMDLVEVLGFLFMLSTMELGREYLTE 250
Query: 146 TLSEIQRSMIKDFADLGLVKLQQGRKESWFIPT----------------IADS------- 182
LS Q +++D D GL+ Q K F PT I+ S
Sbjct: 251 NLSTTQGVLLEDLRDYGLI-WQSKPKSRRFSPTRLGTTLTSSSPPLPTTISASSGPLDGF 309
Query: 183 --LETNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKESLYNAVENGLTAEQ--- 237
LETN+R+YAY+ + L +L LF ++Y+ PNL+VG IT++S+ A+ NG+TA+Q
Sbjct: 310 IVLETNYRIYAYTDNPLQTAVLNLFVSLKYRFPNLVVGMITRDSVRRALMNGITADQIIS 369
Query: 238 ---QNAHPRVADRIPSVLENVCDQIRLWESDLNRVEMTPAHYYDEFPSRED-------SK 287
+AHP++ P + V DQIRLWE + NR++ + + Y F S+ D +K
Sbjct: 370 YLITHAHPQMRKNNPLLPVTVQDQIRLWELEKNRLKSSEGYLYTAFTSQADYDLVLNYAK 429
Query: 288 KMRLVV--NA---------EIHMHMREFL--RGQN 309
++ +V+ NA E H+ ++EF+ R QN
Sbjct: 430 QLDVVLWENAAKRCFFGSLEGHLRIKEFIERRTQN 464
>gi|332030486|gb|EGI70174.1| General transcription factor IIH subunit 4 [Acromyrmex echinatior]
Length = 550
Score = 147 bits (371), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 90/289 (31%), Positives = 163/289 (56%), Gaps = 41/289 (14%)
Query: 32 LEAYAIGQWERFLLQLISSAQAERSINFCSSTMKVFQRGLLIQRDKE--APRLTESGFQF 89
L++YA+ +WE L ++ S Q E + +++ L++RD+ +P +T++GFQF
Sbjct: 149 LDSYALERWECVLHYMVGSQQQE---GISADAVRILLHAGLMKRDEADGSPIITQAGFQF 205
Query: 90 LLMDTNAQLWYIVREYISNSQHDSMLAYERGINQADLISFLLELSFHVAGEAYNLKTLSE 149
LL+DT +Q+WY + +Y+ D++ A RG++ + ++FL +L+F G+ Y+ + +SE
Sbjct: 206 LLLDTASQVWYFILQYL-----DTIEA--RGLDLVECLTFLFQLNFSTLGKDYSTEGMSE 258
Query: 150 IQRSMIKDFADLGLVKLQQGRKESWFIPT-----IADS----------------LETNFR 188
+ ++ + GLV Q+ RK F PT IA +ETN+R
Sbjct: 259 GLLTFLQHLREFGLV-YQRKRKAGRFYPTRLALNIATGETKPLTRDTDKEGYIIVETNYR 317
Query: 189 MYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKESLYNAVENGLTAEQ------QNAHP 242
+YAY+ S L +L LF ++ Y+ PN++V +T++S+ A+++G+TA Q Q+AH
Sbjct: 318 VYAYTNSNLQVALLGLFCEMLYRFPNVVVSILTRDSVRQALKSGITASQIVGYLRQHAHS 377
Query: 243 RVADRIPSVL-ENVCDQIRLWESDLNRVEMTPAHYYDEFPSREDSKKMR 290
++ + P +L + DQI+LWE++ NR + Y +F S+ D + +R
Sbjct: 378 KMIEAGPPILPPTIVDQIKLWENERNRFLFSEGVLYSQFLSQTDFEVLR 426
>gi|348683175|gb|EGZ22990.1| hypothetical protein PHYSODRAFT_479459 [Phytophthora sojae]
Length = 490
Score = 147 bits (370), Expect = 9e-33, Method: Compositional matrix adjust.
Identities = 96/336 (28%), Positives = 162/336 (48%), Gaps = 73/336 (21%)
Query: 13 LPREPMPSGITARLPTLEDLEAYAIGQWERFLLQLISSAQAERSINFCSSTMKVFQRGLL 72
LP++P + A DLE YA +W+ L ++ S + S + + R L
Sbjct: 129 LPKDPENTFAAA------DLERYARARWDSVLHYMVGSTAVQEP---PQSVVDILLRTRL 179
Query: 73 IQR---DKEAPRLTESGFQFLLMDTNAQLWYIVREYISNSQHDSMLAYERGINQADLISF 129
+Q D A +T++G++F+L D + Q+W + EYI + L Q D++ F
Sbjct: 180 LQASGADSRALHITDTGYEFMLKDIHVQMWIFMLEYIRTLDNTGTL------KQEDILQF 233
Query: 130 LLELSFHVAGEAYNLKTLSEIQRSMIKDFADLGLVKLQQGRKESWFIPTIADSL------ 183
L ++S+ GE Y + L+E QR ++ DF D GL+ ++ + ++ ++A +L
Sbjct: 234 LFQISYCQTGEYYAVADLTETQRLLLGDFIDFGLLFRKRPNSDRFYTTSLAVNLIFGGST 293
Query: 184 -------------------------------------------ETNFRMYAYSTSKLHCE 200
ETNF++YAY+TS LH
Sbjct: 294 GQKRSHVSLTSSFAGVRAGLKSQVADPRQAPTADHSAQLLVVVETNFKIYAYTTSTLHVA 353
Query: 201 ILRLFSKIEYQLPNLIVGAITKESLYNAVENGLTAEQ------QNAHPRVADRIPSVLEN 254
+L +F I +LPNL +G IT+ESL +A+ +G++A+Q ++AHP++ P + EN
Sbjct: 354 MLSVFVDIVARLPNLAIGFITRESLRSALIHGISAQQIYDFLMKHAHPKMRRNSPVIPEN 413
Query: 255 VCDQIRLWESDLNRVEMTPAHYYDEFPSREDSKKMR 290
+ DQI LWE + NRV+ +D F ++ED + +R
Sbjct: 414 IADQIYLWERERNRVQFMEGILFDGFNTKEDYESVR 449
>gi|350413829|ref|XP_003490125.1| PREDICTED: general transcription factor IIH subunit 4-like [Bombus
impatiens]
Length = 467
Score = 146 bits (369), Expect = 9e-33, Method: Compositional matrix adjust.
Identities = 91/289 (31%), Positives = 163/289 (56%), Gaps = 41/289 (14%)
Query: 32 LEAYAIGQWERFLLQLISSAQAERSINFCSSTMKVFQRGLLIQRDKE--APRLTESGFQF 89
L++YA+ +WE L ++ S Q E + +++ L++RD+ +P +T++GFQF
Sbjct: 149 LDSYALERWECVLHYMVGSQQQE---GISADAVRILLHAGLMKRDEADGSPVITQAGFQF 205
Query: 90 LLMDTNAQLWYIVREYISNSQHDSMLAYERGINQADLISFLLELSFHVAGEAYNLKTLSE 149
LL++T +Q+WY + +Y+ D++ A RG++ + ++FL +L+F G+ Y+ + +SE
Sbjct: 206 LLLETASQVWYFILQYL-----DTIEA--RGLDLVECLTFLFQLNFSTLGKDYSTEGMSE 258
Query: 150 IQRSMIKDFADLGLVKLQQGRKESWFIPT-----IADS----------------LETNFR 188
+ ++ + GLV Q+ RK F PT IA +ETN+R
Sbjct: 259 GLSTFLQHLREFGLV-YQRKRKAGRFYPTRLALNIATGQNKPLSRDPEKEGYIVVETNYR 317
Query: 189 MYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKESLYNAVENGLTAE------QQNAHP 242
+YAY+ S L +L LF ++ Y+ PNL+V +T++S+ A+++G+TA QQ+AH
Sbjct: 318 VYAYTNSNLQVALLGLFCEMLYRFPNLVVSILTRDSVRQALKSGITAAQIVGYLQQHAHG 377
Query: 243 RVADRIPSVL-ENVCDQIRLWESDLNRVEMTPAHYYDEFPSREDSKKMR 290
++ + P VL + DQI+LWE++ NR + Y +F S+ D + +R
Sbjct: 378 KMIEAGPPVLPPTIVDQIKLWENERNRFIFSEGVLYSQFLSQTDFEVLR 426
>gi|383852611|ref|XP_003701820.1| PREDICTED: general transcription factor IIH subunit 4-like
[Megachile rotundata]
Length = 467
Score = 146 bits (369), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 91/289 (31%), Positives = 163/289 (56%), Gaps = 41/289 (14%)
Query: 32 LEAYAIGQWERFLLQLISSAQAERSINFCSSTMKVFQRGLLIQRDKE--APRLTESGFQF 89
L++YA+ +WE L ++ S Q E + +++ L++RD+ +P +T++GFQF
Sbjct: 149 LDSYALERWECVLHYMVGSQQQE---GISADAVRILLHAGLMKRDEADGSPVITQAGFQF 205
Query: 90 LLMDTNAQLWYIVREYISNSQHDSMLAYERGINQADLISFLLELSFHVAGEAYNLKTLSE 149
LL++T +Q+WY + +Y+ D++ A RG++ + ++FL +L+F G+ Y+ + +SE
Sbjct: 206 LLLETASQVWYFILQYL-----DTIEA--RGLDLVECLTFLFQLNFSTLGKDYSTEGMSE 258
Query: 150 IQRSMIKDFADLGLVKLQQGRKESWFIPT-----IADS----------------LETNFR 188
+ ++ + GLV Q+ RK F PT IA +ETN+R
Sbjct: 259 GLLTFLQHLREFGLV-YQRKRKAGRFYPTRLALNIATGQNKPLSRDPDKEGYIVVETNYR 317
Query: 189 MYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKESLYNAVENGLTAE------QQNAHP 242
+YAY+ S L +L LF ++ Y+ PNL+V +T++S+ A+++G+TA QQ+AH
Sbjct: 318 VYAYTNSNLQVALLGLFCEMLYRFPNLVVSILTRDSVRQALKSGITASQIVGYLQQHAHS 377
Query: 243 RVADRIPSVL-ENVCDQIRLWESDLNRVEMTPAHYYDEFPSREDSKKMR 290
++ + P VL + DQI+LWE++ NR + Y +F S+ D + +R
Sbjct: 378 KMIEAGPPVLPPTIVDQIKLWENERNRFIFSEGVLYSQFLSQTDFEVLR 426
>gi|340710070|ref|XP_003393621.1| PREDICTED: general transcription factor IIH subunit 4-like [Bombus
terrestris]
Length = 467
Score = 146 bits (368), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 91/289 (31%), Positives = 162/289 (56%), Gaps = 41/289 (14%)
Query: 32 LEAYAIGQWERFLLQLISSAQAERSINFCSSTMKVFQRGLLIQRDKE--APRLTESGFQF 89
L++YA+ +WE L ++ S Q E + +++ L++RD+ +P +T++GFQF
Sbjct: 149 LDSYALERWECVLHYMVGSQQQE---GISADAVRILLHAGLMKRDEADGSPVITQAGFQF 205
Query: 90 LLMDTNAQLWYIVREYISNSQHDSMLAYERGINQADLISFLLELSFHVAGEAYNLKTLSE 149
LL++T +Q+WY + +Y+ D++ A RG++ + ++FL +L+F G+ Y+ + +SE
Sbjct: 206 LLLETASQVWYFILQYL-----DTIEA--RGLDLVECLTFLFQLNFSTLGKDYSTEGMSE 258
Query: 150 IQRSMIKDFADLGLVKLQQGRKESWFIPT-----IADS----------------LETNFR 188
+ ++ + GLV Q+ RK F PT IA +ETN+R
Sbjct: 259 GLSTFLQHLREFGLV-YQRKRKAGRFYPTRLALNIATGQNKPLSRDPEKEGYIVVETNYR 317
Query: 189 MYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKESLYNAVENGLTAE------QQNAHP 242
+YAY+ S L +L LF ++ Y+ PNL+V +T++S+ A+++G+TA QQ+AH
Sbjct: 318 VYAYTNSNLQVALLGLFCEMLYRFPNLVVSILTRDSVRQALKSGITAAQIVGYLQQHAHG 377
Query: 243 RVADRIPSVL-ENVCDQIRLWESDLNRVEMTPAHYYDEFPSREDSKKMR 290
++ + P VL + DQI+LWE++ NR Y +F S+ D + +R
Sbjct: 378 KMIEAGPPVLPPTIVDQIKLWENERNRFIFNEGVLYSQFLSQTDFEVLR 426
>gi|48102983|ref|XP_395476.1| PREDICTED: general transcription factor IIH subunit 4 [Apis
mellifera]
Length = 467
Score = 146 bits (368), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 90/289 (31%), Positives = 163/289 (56%), Gaps = 41/289 (14%)
Query: 32 LEAYAIGQWERFLLQLISSAQAERSINFCSSTMKVFQRGLLIQRDKE--APRLTESGFQF 89
L++YA+ +WE L ++ S Q E + +++ L++RD+ +P +T++GFQF
Sbjct: 149 LDSYALERWECVLHYMVGSQQQE---GISADAVRILLHAGLMKRDEADGSPVITQAGFQF 205
Query: 90 LLMDTNAQLWYIVREYISNSQHDSMLAYERGINQADLISFLLELSFHVAGEAYNLKTLSE 149
LL++T +Q+WY + +Y+ D++ A RG++ + ++FL +L+F G+ Y+ + +SE
Sbjct: 206 LLLETASQVWYFILQYL-----DTIEA--RGLDLVECLTFLFQLNFSTLGKDYSTEGMSE 258
Query: 150 IQRSMIKDFADLGLVKLQQGRKESWFIPT-----IADS----------------LETNFR 188
+ ++ + GLV Q+ RK F PT IA +ETN+R
Sbjct: 259 GLLTFLQHLREFGLV-YQRKRKAGRFYPTRLALNIATGQNKPLSRDPEKEGYIVVETNYR 317
Query: 189 MYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKESLYNAVENGLTAE------QQNAHP 242
+YAY+ S L +L LF ++ Y+ PNL+V +T++S+ A+++G+TA QQ+AH
Sbjct: 318 VYAYTNSNLQVALLGLFCEMLYRFPNLVVSILTRDSVRQALKSGITATQIVGYLQQHAHS 377
Query: 243 RVADRIPSVL-ENVCDQIRLWESDLNRVEMTPAHYYDEFPSREDSKKMR 290
++ + P +L + DQI+LWE++ NR + Y +F S+ D + +R
Sbjct: 378 KMIEAGPPILPPTIVDQIKLWENERNRFIFSEGVLYSQFLSQTDFEVLR 426
>gi|380014187|ref|XP_003691121.1| PREDICTED: general transcription factor IIH subunit 4-like [Apis
florea]
Length = 467
Score = 146 bits (368), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 90/289 (31%), Positives = 163/289 (56%), Gaps = 41/289 (14%)
Query: 32 LEAYAIGQWERFLLQLISSAQAERSINFCSSTMKVFQRGLLIQRDKE--APRLTESGFQF 89
L++YA+ +WE L ++ S Q E + +++ L++RD+ +P +T++GFQF
Sbjct: 149 LDSYALERWECVLHYMVGSQQQE---GISADAVRILLHAGLMKRDEADGSPVITQAGFQF 205
Query: 90 LLMDTNAQLWYIVREYISNSQHDSMLAYERGINQADLISFLLELSFHVAGEAYNLKTLSE 149
LL++T +Q+WY + +Y+ D++ A RG++ + ++FL +L+F G+ Y+ + +SE
Sbjct: 206 LLLETASQVWYFILQYL-----DTIEA--RGLDLVECLTFLFQLNFSTLGKDYSTEGMSE 258
Query: 150 IQRSMIKDFADLGLVKLQQGRKESWFIPT-----IADS----------------LETNFR 188
+ ++ + GLV Q+ RK F PT IA +ETN+R
Sbjct: 259 GLLTFLQHLREFGLV-YQRKRKAGRFYPTRLALNIATGQNKPLSRDPEKEGYIVVETNYR 317
Query: 189 MYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKESLYNAVENGLTAE------QQNAHP 242
+YAY+ S L +L LF ++ Y+ PNL+V +T++S+ A+++G+TA QQ+AH
Sbjct: 318 VYAYTNSNLQVALLGLFCEMLYRFPNLVVSILTRDSVRQALKSGITATQIVGYLQQHAHS 377
Query: 243 RVADRIPSVL-ENVCDQIRLWESDLNRVEMTPAHYYDEFPSREDSKKMR 290
++ + P +L + DQI+LWE++ NR + Y +F S+ D + +R
Sbjct: 378 KMIEAGPPILPPTIVDQIKLWENERNRFIFSEGVLYSQFLSQTDFEVLR 426
>gi|392594388|gb|EIW83712.1| transcription factor Tfb2 [Coniophora puteana RWD-64-598 SS2]
Length = 486
Score = 145 bits (367), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 94/308 (30%), Positives = 153/308 (49%), Gaps = 57/308 (18%)
Query: 27 PTLEDLEAYAIGQWERFLLQLISSAQAERSINFCSSTMKVFQR-GLLIQRDKEAPRLTES 85
P++E L+ YA+ +WE L ++SS Q + + + QR GL+ ++T S
Sbjct: 141 PSVETLDGYAVQRWETILHYMVSSGQGQYPTKPTQGVLYLLQRSGLMASYHGSTLQITSS 200
Query: 86 GFQFLLMDTNAQLWYIVREYISNSQHDSMLAYERGINQADLISFLLELSFHVAGEAYNLK 145
GFQFLL + QLW ++ +Y+ + ER ++ +++SF LS G Y+ +
Sbjct: 201 GFQFLLYSPHDQLWDLLLQYLH-------MVEERQMDLVEVLSFFFMLSTMELGREYSTE 253
Query: 146 TLSEIQRSMIKDFADLGLVKLQQGRKESWFIPT--------------------------- 178
LSE Q++M++D D GLV Q+ F PT
Sbjct: 254 PLSETQKAMLEDLRDYGLV-WQRKASSKRFSPTRLATTLTSVSPSLPTAGGSRNPGSAPG 312
Query: 179 ---IADS------------LETNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKE 223
+A+S LETN+R+YAY+ + L +L LF ++Y+ PNL+VG +T+E
Sbjct: 313 ASSVANSTGINTNDHGFIVLETNYRVYAYTDNPLQIAVLNLFITLKYRFPNLVVGMLTRE 372
Query: 224 SLYNAVENGLTAEQ------QNAHPRVADRIPSVLENVCDQIRLWESDLNRVEMTPAHYY 277
S+ A+ NG++AEQ +AHP++ P + V DQ+RLWE + NR++ Y
Sbjct: 373 SVRRALGNGISAEQVISYLTAHAHPQMRKNNPLLPVTVQDQVRLWELERNRLKSDDGFLY 432
Query: 278 DEFPSRED 285
+F ++ D
Sbjct: 433 KDFATQAD 440
>gi|393246879|gb|EJD54387.1| transcription factor Tfb2 [Auricularia delicata TFB-10046 SS5]
Length = 480
Score = 145 bits (366), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 99/323 (30%), Positives = 163/323 (50%), Gaps = 45/323 (13%)
Query: 1 SNLWKHLINGGALPREPMPSGITARLP--TLEDLEAYAIGQWERFLLQLISSAQAERSIN 58
+NL L+ GG P +A LP T+ L+AYA+ +WE L ++SS +
Sbjct: 115 ANLRLALVGGGDHNSFGKPVKRSAELPPVTVSALDAYAVERWETILHFMVSSGTDQSPAT 174
Query: 59 FCSSTMKVFQR-GLLIQ---RDKEAPRLTESGFQFLLMDTNAQLWYIVREYISNSQHDSM 114
+ + ++ GL+I+ R + ++T GFQFLL +AQLW ++ Y+
Sbjct: 175 PSGAVCNLLRKSGLMIRLDPRSDSSMKITSRGFQFLLSSPHAQLWELLLHYLE------- 227
Query: 115 LAYERGINQADLISFLLELSFHVAGEAYNLKTLSEIQRSMIKDFADLGLV--KLQQGRKE 172
LA ERG+ +++SFL LS G+ Y+ L++ Q +++ + D GL+ + G +
Sbjct: 228 LAEERGLGLMEVVSFLFMLSTMELGQEYSTDNLTKDQATVLGELLDYGLIYQRALPGMSK 287
Query: 173 SWFIPTIADSL------------------------ETNFRMYAYSTSKLHCEILRLFSKI 208
+F +A +L ETN+R+YAY+ + L +L LF
Sbjct: 288 RFFPTRLATTLMSSLPELPRTAGVASATSGGFIILETNYRLYAYTDNPLQIAVLNLFVSF 347
Query: 209 EYQLPNLIVGAITKESLYNAVENGLTAEQ------QNAHPRVADRIPSVLENVCDQIRLW 262
+ + PNL+VG +T++S+ A+ NG+TAEQ +AHP++ P + V DQ+RLW
Sbjct: 348 KSRFPNLVVGMVTRDSVKKALANGITAEQIITYLSAHAHPQMRKNNPLLPVTVQDQVRLW 407
Query: 263 ESDLNRVEMTPAHYYDEFPSRED 285
E + NRV+ Y +F S+ D
Sbjct: 408 ELEKNRVKAEEGFLYMDFTSQAD 430
>gi|321470926|gb|EFX81900.1| hypothetical protein DAPPUDRAFT_210868 [Daphnia pulex]
Length = 463
Score = 145 bits (366), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 100/346 (28%), Positives = 170/346 (49%), Gaps = 69/346 (19%)
Query: 16 EPMPSGITARLPTLEDLEAYAIGQWERFLLQLISSAQAERSINFCSSTMKVFQRGLLIQR 75
+P GI L+ YA+G+WE L ++ S Q E S +++ Q L+++
Sbjct: 132 DPKARGIAV-------LDEYAMGRWECVLHFMVGSHQHE---AISSDALQILQHAGLMKK 181
Query: 76 DKEAPRL--TESGFQFLLMDTNAQLWYIVREYISNSQHDSMLAYERGINQADLISFLLEL 133
+ +L T+ GFQFLLMDT+AQ+WY + +Y+ A R ++ D + FL +L
Sbjct: 182 EPGENQLSITKDGFQFLLMDTSAQVWYFLLQYLDT-------ANSRNLDLIDCLGFLFQL 234
Query: 134 SFHVAGEAYNLKTLSEIQRSMIKDFADLGLVKLQQGRKESWFIPT-------------IA 180
SF G+ Y+ ++++ + ++ + GLV Q+ RK+ F PT +
Sbjct: 235 SFSTLGQDYSTDSMNDGLQKFLQHLREFGLV-YQRKRKDGRFYPTRLALDIAAGPKKSML 293
Query: 181 DSL------------ETNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKESLYNA 228
+SL ETN+R+YAY+ S L ++ LF ++ Y+ PNL+VG IT+ES+ A
Sbjct: 294 NSLNASSQTTGYIVVETNYRVYAYTDSSLQVALIALFCELIYRFPNLVVGIITRESVREA 353
Query: 229 VENGLTAEQ------QNAHPRVADRIPSVLENVCDQIRLWESDLNRVEMTPAHYYDEFPS 282
++ G+TA+Q Q+AH P + + DQI+LW + +R Y++F S
Sbjct: 354 LKRGITADQIVSFLRQHAHSECYKEPPVLPSTIADQIKLWAIERDRFLYKDGVLYNQFDS 413
Query: 283 REDSKKMR------------------LVVNAEIHMHMREFLRGQNK 310
+ D + +R +VV E H +R+F + ++
Sbjct: 414 QADFEILRNYAQERGLLVWHTLNGRKMVVTKEGHDEVRKFWKRHSR 459
>gi|307212060|gb|EFN87943.1| General transcription factor IIH subunit 4 [Harpegnathos saltator]
Length = 467
Score = 145 bits (366), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 91/289 (31%), Positives = 161/289 (55%), Gaps = 41/289 (14%)
Query: 32 LEAYAIGQWERFLLQLISSAQAERSINFCSSTMKVFQRGLLIQRDKE--APRLTESGFQF 89
L++YA+ +WE L ++ S Q E + +++ L++RD+ +P +T++GFQF
Sbjct: 149 LDSYALERWECVLHYMVGSQQQE---GISADAVRILLHAGLMKRDETDGSPIITQAGFQF 205
Query: 90 LLMDTNAQLWYIVREYISNSQHDSMLAYERGINQADLISFLLELSFHVAGEAYNLKTLSE 149
LL+DT +Q+WY + +Y+ D++ A RG++ + ++FL +L+F G+ Y+ + +SE
Sbjct: 206 LLLDTASQVWYFILQYL-----DTIEA--RGLDLIECLTFLFQLNFSTLGKDYSTEGMSE 258
Query: 150 IQRSMIKDFADLGLVKLQQGRKESWFIPT-----IADS----------------LETNFR 188
+ ++ + GLV Q+ RK F PT IA +ETN+R
Sbjct: 259 GLLTFLQHLREFGLV-YQRKRKAGRFYPTRLALNIATGETKPLTRDTDKEGYIVVETNYR 317
Query: 189 MYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKESLYNAVENGLTAE------QQNAHP 242
+YAY+ S L +L LF ++ Y+ PNL+V +T++S+ A+++G+TA QQ+AH
Sbjct: 318 VYAYTNSNLQVALLGLFCEMIYRFPNLVVSILTRDSVRQALKSGITATQIVGYLQQHAHS 377
Query: 243 RVADRIPSVL-ENVCDQIRLWESDLNRVEMTPAHYYDEFPSREDSKKMR 290
+ + P +L + DQI LWE++ NR + Y +F S+ D + +R
Sbjct: 378 KTIEAGPPILPPTIVDQIMLWENERNRFLFSEGVLYSQFLSQTDFEVLR 426
>gi|440800489|gb|ELR21525.1| transcription factor tfb2 subfamily protein [Acanthamoeba
castellanii str. Neff]
Length = 465
Score = 145 bits (366), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 85/288 (29%), Positives = 154/288 (53%), Gaps = 36/288 (12%)
Query: 26 LPTLEDLEAYAIGQWERFLLQLISSAQAERSINFCSSTMKVFQRG--LLIQRDKEAPRLT 83
+PT E+L A+ W+ L ++ S + + + RG +++ + ++ R+
Sbjct: 138 MPTREELAAFTTSCWDTIFLFIMGSTVIQPP---SDRVVSLLTRGEFMVVHEEDQSIRIA 194
Query: 84 ESGFQFLLMDTNAQLWYIVREYISNSQHDSMLAYERGINQADLISFLLELSFHVAGEAYN 143
+ GF FLL D Q+W ++ Y+ + Q E N D++SFL LSF GE Y
Sbjct: 195 DKGFPFLLKDLRTQVWTLLLLYLRSLQ-------EEKANVHDVLSFLFRLSFLTVGEGYQ 247
Query: 144 LKTLSEIQRSMIKDFADLGLVKLQQGRKESWFIPT-IADSLE----------------TN 186
+ L+ + +++D DLG++ ++ + W PT +A L T+
Sbjct: 248 MDDLAFSESGLLQDLQDLGII-YRKHKDSKWLYPTQLAIGLSSTEAAKRDQEGWIIVGTD 306
Query: 187 FRMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKESLYNAVENGLTAEQ------QNA 240
+R+YAY++S + +L LF++IEYQLPN+++G + +E++ AV+ G++A Q NA
Sbjct: 307 YRIYAYTSSPVKLLLLSLFTQIEYQLPNMVMGILLRENIRQAVQVGISANQILQFLETNA 366
Query: 241 HPRVADRIPSVLENVCDQIRLWESDLNRVEMTPAHYYDEFPSREDSKK 288
HP++ P + E++ DQ+RLWE++ R+ ++ ++YD+F S KK
Sbjct: 367 HPQMKQNTPIIPESIADQLRLWEAEDRRLSLSSGYFYDDFASLAAFKK 414
>gi|395332344|gb|EJF64723.1| transcription factor Tfb2 [Dichomitus squalens LYAD-421 SS1]
Length = 506
Score = 145 bits (365), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 103/349 (29%), Positives = 172/349 (49%), Gaps = 77/349 (22%)
Query: 27 PTLEDLEAYAIGQWERFLLQLISSAQAERSINFCSSTMKVFQR-GLLIQRDKEAPRLTES 85
P +E L+A+A+ +WE L ++SS + + + QR GL+ ++T +
Sbjct: 157 PDIEALDAFALERWETILYYMVSSGTGQFPAKPSQGVLYLLQRSGLMATVHGATLQITSA 216
Query: 86 GFQFLLMDTNAQLWYIVREYISNSQHDSMLAYERGINQADLISFLLELSFHVAG------ 139
GFQFLL + QLW ++ +Y+ +A ER ++ +++SFLL LS G
Sbjct: 217 GFQFLLHPPHEQLWELLLQYLQ-------MAEERQMDLVEVLSFLLMLSTTELGKVGVHT 269
Query: 140 --------------EAYNLKTLSEIQRSMIKDFADLGLVKLQQG--RK------------ 171
++Y+ + LS Q++M++D D GL++ + RK
Sbjct: 270 IQFIAQVTQAIPHAQSYSTENLSATQKAMLEDLRDYGLIRQRTATSRKFSPTRLATTLTS 329
Query: 172 ESWFIPTIADS-----------LETNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAI 220
S +PT A + LETN+R+YAY+ + L +L LF ++Y+ PNL+VG I
Sbjct: 330 SSPPLPTSAGTGDGSHVQGFIVLETNYRLYAYTDNPLQIAVLNLFVTLKYRFPNLVVGQI 389
Query: 221 TKESLYNAVENGLTAEQ------QNAHPRVADRIPSVLENVCDQIRLWESDLNRVEMTPA 274
T++S+ A+ NG+TA+Q +AHP++ P + V DQIRLWE + NRV+
Sbjct: 390 TRDSVKKALANGITADQIISYLITHAHPQMRKNKPLLPVTVQDQIRLWELERNRVKSQEG 449
Query: 275 HYYDEFPSRED-------SKKMRLVV-----------NAEIHMHMREFL 305
+ Y F S D +KK+ +V+ + E HM++R ++
Sbjct: 450 YLYTAFASHADYEWVLDYAKKLGVVLWENPSKRCFFGSVEGHMNIRGYI 498
>gi|169610043|ref|XP_001798440.1| hypothetical protein SNOG_08115 [Phaeosphaeria nodorum SN15]
gi|160701967|gb|EAT84391.2| hypothetical protein SNOG_08115 [Phaeosphaeria nodorum SN15]
Length = 426
Score = 144 bits (364), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 92/303 (30%), Positives = 154/303 (50%), Gaps = 49/303 (16%)
Query: 28 TLEDLEAYAIGQWERFLLQLISSAQA----ERSINFCSSTMKVFQRGLLIQRDKEAPRLT 83
++E L+A+A QWE L ++S A ++ T K+ G L++ PR+T
Sbjct: 90 SIEFLDAHAREQWEGILFFMVSGAAGFQPGSVKMDVGPGTKKLLHAGDLVRTVHGTPRIT 149
Query: 84 ESGFQFLLMDTNAQLWYIVREYISNSQHDSMLAYERGINQADLISFLLELSFHVAGEAYN 143
+ GF F+L +TNAQ+W ++ Y+ + + G+++ +++SFL L G+ Y+
Sbjct: 150 KEGFSFVLQETNAQVWNLLIVYLK-------MVDDLGMSETEVLSFLFMLGSLELGQDYS 202
Query: 144 LKTLSEIQRSMIKDFADLGLVKLQQGRKESWFIPT------IADS--------------- 182
TLS Q M+ D + +G+V + + F PT +DS
Sbjct: 203 TSTLSPSQLHMLDDLSAMGIV-YRSSKDSPTFYPTRLATTLTSDSGALPGSDVGTTEKPD 261
Query: 183 ----------LETNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKESLYNAVENG 232
+ETN+R+YAY+ S + IL LF+K++++ PNL+ G +TKES++ AV+ G
Sbjct: 262 SKAQNKGFIIVETNYRLYAYTNSLIQIAILSLFTKLQHRFPNLVSGKLTKESVHRAVQAG 321
Query: 233 LTAEQ------QNAHPRVADRIPSVLENVCDQIRLWESDLNRVEMTPAHYYDEFPSREDS 286
+T+ Q AHP++ P + V DQIRLWE + RVE+T + EF S +
Sbjct: 322 ITSAQIISYLTTYAHPQMQKSNPPLPPTVMDQIRLWEYEGERVEVTTGYLMREFGSESEY 381
Query: 287 KKM 289
+ +
Sbjct: 382 RDV 384
>gi|157113167|ref|XP_001651923.1| TFIIH basal transcription factor complex p52 subunit [Aedes
aegypti]
gi|108877858|gb|EAT42083.1| AAEL006356-PA [Aedes aegypti]
Length = 487
Score = 144 bits (364), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 94/304 (30%), Positives = 159/304 (52%), Gaps = 51/304 (16%)
Query: 29 LEDLEAYAIGQWERFLLQLISSAQAERSI---NFCSSTMKVFQRGLLIQRDKE--APRLT 83
+E L+AYA+ +W R +L + A + + + +++ L++RD+ +P +T
Sbjct: 152 IEFLDAYAMSRW-RCVLHYMVGAGSSKGMEGEGISPDAVRILLHANLMKRDETDGSPVIT 210
Query: 84 ESGFQFLLMDTNAQLWYIVREYISNSQHDSMLAYERGINQADLISFLLELSFHVAGEAYN 143
GFQFLL+DT AQ+W+ + +Y+ + RG++ A+ +S L +LSF G Y+
Sbjct: 211 RQGFQFLLLDTQAQVWHFMLQYLDTCE-------ARGLDLAECLSMLFQLSFSTLGRDYS 263
Query: 144 LKTLSEIQRSMIKDFADLGLVKLQQGRKESWFIPT---------------------IADS 182
+ LS+ + ++ + GLV Q+ RKE F PT + D
Sbjct: 264 SEGLSQGLLTFLQHLREFGLV-YQRKRKEGRFYPTRLAHNITSKNAVQTIQEDGSSVQDK 322
Query: 183 ----LETNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKESLYNAVENGLTAEQ- 237
+ETN+R+YAY+ S L +L LF+++ Y+ PNL+VG +T++S+ A G+TAEQ
Sbjct: 323 GYIIVETNYRVYAYTDSNLQVALLGLFTELLYRFPNLVVGVLTRDSVRQAFRGGITAEQI 382
Query: 238 -----QNAHPRVADRIPSV------LENVCDQIRLWESDLNRVEMTPAHYYDEFPSREDS 286
Q+AHP + + ++ V DQI+LWE++ NR T Y++F S+ D
Sbjct: 383 ISYLEQHAHPTMLNMEQAINSKSPLPPTVVDQIKLWENERNRFTYTEGVVYNQFLSQGDF 442
Query: 287 KKMR 290
+R
Sbjct: 443 NTLR 446
>gi|328873270|gb|EGG21637.1| general transcription factor IIH [Dictyostelium fasciculatum]
Length = 453
Score = 144 bits (363), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 100/331 (30%), Positives = 161/331 (48%), Gaps = 66/331 (19%)
Query: 28 TLEDLEAYAIGQWERFLLQLISSAQAERSINFCSSTMKVFQRGLLIQRDKEAPRLTESGF 87
T+E+L+ Y+ GQWE+ L L +A + + L +++ + +T GF
Sbjct: 133 TVEELDKYSKGQWEKVLYYLSDEGKAPPEL-----VSDLLLSSNLTKKNGTSIAITSEGF 187
Query: 88 QFLLMDTNAQLWYIVREYISNSQHDSMLAYERGINQADLISFLLELSFHVAGEAYNLKTL 147
+F+L D Q+W ++ Y++ + RG + + + FL +LSF G++Y L L
Sbjct: 188 KFMLKDIYTQIWTLIIVYLNTLE-------SRGRPRKEALIFLFKLSFLTLGKSYYLADL 240
Query: 148 SEIQRSMIKDFADLGLVKLQQGRKESWFIPTIADSL------------------------ 183
+ QR M+ D + GLV ++ + + ++ +A SL
Sbjct: 241 NPNQRDMLFDLKEFGLVYVRSEKSDVFYPTRLAISLATGRTVSLMNDLAQEISTSQKDQG 300
Query: 184 ----ETNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKESLYNAVENGLTAEQ-- 237
ETNFR+YAY+ S L ++ LF K+ Y+LPNL VG +T+ES+ +A+ +G+TA+Q
Sbjct: 301 YLILETNFRIYAYTQSSLQISLISLFVKMLYRLPNLAVGILTRESVRSALLHGITADQIV 360
Query: 238 ----QNAHPRVADRIPSVLENVCDQIRLWESDLNRVEMTPAHYYDEFPSRE--------- 284
QNAHP + I E V +QIRLWES+ NR+ A +D FP+ E
Sbjct: 361 DFVKQNAHPNMV--ISGYPEVVFEQIRLWESERNRITYKKAVLFDSFPNAESFSKTVTFA 418
Query: 285 ---------DSKKMRLVVNAEIHMHMREFLR 306
D K LVVN E +R +++
Sbjct: 419 KDQYFLVWFDETKKMLVVNDEGSEPIRNYIK 449
>gi|74143475|dbj|BAE28812.1| unnamed protein product [Mus musculus]
Length = 463
Score = 144 bits (363), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 97/326 (29%), Positives = 166/326 (50%), Gaps = 56/326 (17%)
Query: 29 LEDLEAYAIGQWERFLLQLISSAQAERSINFCSSTMKVFQRGLLIQRDK-EAPRLTESGF 87
+ L+ YA +WE L ++ S A S + + Q GL+ + E P +T +GF
Sbjct: 146 VPSLDKYAEERWEVVLHFMVGSPSAAVSQDLAQ---LLSQAGLMKSTEPGEPPCITSAGF 202
Query: 88 QFLLMDTNAQLWYIVREYISNSQHDSMLAYERGINQADLISFLLELSFHVAGEAYNLKTL 147
QFLL+D AQLWY + +Y+ +Q RG++ +++SFL +LSF G+ Y+++ +
Sbjct: 203 QFLLLDMPAQLWYFMLQYLQTAQ-------SRGMDLVEILSFLFQLSFSTLGKDYSVEGM 255
Query: 148 SEIQRSMIKDFADLGLVKLQQGRKESWFIPT-IADSL-------------------ETNF 187
S+ + ++ + GLV Q+ RK + PT +A +L ETN+
Sbjct: 256 SDSLLNFLQHLREFGLV-FQRKRKSRRYYPTRLAINLSSGVSGAGGTVHQPGFIVVETNY 314
Query: 188 RMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKESLYNAVENGLTAEQ------QNAH 241
R+YAY+ S+L ++ LFS++ Y+ PN++V +T+ES+ + +G+TA+Q AH
Sbjct: 315 RLYAYTESELQIALIALFSEMLYRFPNMVVAQVTRESVQQVIASGITAQQIIHFLRTRAH 374
Query: 242 PRVADRIPSVLENVCDQIRLWESDLNRVEMTPAHYYDEFPSR------------------ 283
P + + P + + DQIRLWE + +R+ T Y++F S+
Sbjct: 375 PVMLKQNPVLPPTITDQIRLWELERDRLRFTEGVLYNQFLSQVVFELLLAHARELGVLVF 434
Query: 284 EDSKKMRLVVNAEIHMHMREFLRGQN 309
E+S K +VV H ++ F + Q
Sbjct: 435 ENSAKRLMVVTPAGHSDVKRFWKRQK 460
>gi|442757633|gb|JAA70975.1| Putative rna polymer [Ixodes ricinus]
Length = 459
Score = 144 bits (362), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 89/288 (30%), Positives = 151/288 (52%), Gaps = 40/288 (13%)
Query: 32 LEAYAIGQWERFLLQLISSAQAERSINFCSSTMKVFQRGLLIQRDKE---APRLTESGFQ 88
L+ YA+ +WE L ++ E + +++ L++ ++E AP +T GFQ
Sbjct: 143 LDRYAMERWECVLHFMVGCHTKE---GISADAVRILLHAGLMKSEEEEGSAPLITMEGFQ 199
Query: 89 FLLMDTNAQLWYIVREYISNSQHDSMLAYERGINQADLISFLLELSFHVAGEAYNLKTLS 148
FLLMDT +Q+W+ V +Y+ + RG+N + ++FL +LSF G+ Y+ + +S
Sbjct: 200 FLLMDTASQVWHFVLQYLDTLE-------SRGLNLVECLTFLFQLSFLTLGKDYSTEGMS 252
Query: 149 EIQRSMIKDFADLGLVKLQQGRKESWFIPT-----IADSL---------------ETNFR 188
E ++ + GLV Q+ R+ F PT +A L ETN+R
Sbjct: 253 ESLLVFLQHLREFGLV-YQRKRRSGRFYPTRLAINLASGLKETNLRSYESGYIVVETNYR 311
Query: 189 MYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKESLYNAVENGLTAE------QQNAHP 242
+YAY+ S+L +L LF ++ Y+LPNL+VG +T+ES+ A+ +G+T+ Q +AHP
Sbjct: 312 VYAYTDSQLQVALLALFCELMYRLPNLVVGVLTRESVRQALRSGITSNQIIKFLQMHAHP 371
Query: 243 RVADRIPSVLENVCDQIRLWESDLNRVEMTPAHYYDEFPSREDSKKMR 290
+ P + + DQ+RLWE + +R Y +F S+ D + +R
Sbjct: 372 EAQKQSPVIPPTIMDQLRLWELERDRFNFREGVLYSQFISQSDFQLLR 419
>gi|320167307|gb|EFW44206.1| transcription factor tfb2 [Capsaspora owczarzaki ATCC 30864]
Length = 406
Score = 144 bits (362), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 95/307 (30%), Positives = 153/307 (49%), Gaps = 48/307 (15%)
Query: 10 GGALPREPMPSGITARLPTLEDLEAYAIGQWERFLLQLISSAQAERSINFCSSTMKVFQR 69
GA P EP A + +LE Y+ +WE +LQ +++A E + V
Sbjct: 49 AGADPLEP-----DAHAKDISELEQYSRARWEA-VLQFMAAANTE---GVTQEVVNVLID 99
Query: 70 GLLIQRDKEA-----PRLTESGFQFLLMDTNAQLWYIVREYISNSQHDSMLAYERGINQA 124
LI P +T GFQFLL D Q+WY + +Y+++ Q +RG +
Sbjct: 100 AELISLSTTGEGAGRPVITNKGFQFLLQDVATQVWYFLTQYLNSLQ-------KRGADPV 152
Query: 125 DLISFLLELSFHVAGEAYNLKTLSEIQRSMIKDFADLGLVKLQQGRKESWFIPT------ 178
+ ++ L LSF G Y ++ L+E Q +++ ++GLV ++ R F PT
Sbjct: 153 EALALLFRLSFSTVGMDYPVEGLTEGQLDLLQHLREIGLV-FRRKRTSRRFYPTPLAINL 211
Query: 179 ---------IADS-----LETNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKES 224
AD +ETNFR+YAY+ S L +L LF + Y+ PN++ G ++++S
Sbjct: 212 ASGSAKNLDAADVKGYIVVETNFRIYAYTDSPLQLALLSLFVDLRYRFPNMVCGLLSRDS 271
Query: 225 LYNAVENGLTAEQ------QNAHPRVADRIPSVLENVCDQIRLWESDLNRVEMTPAHYYD 278
+ A+ GLTAEQ +AHP++ R P + E + DQ+RLWE + NR+ + PA Y+
Sbjct: 272 VRKALVKGLTAEQMIRFLRTHAHPQMRSRTPVLPETISDQLRLWELERNRLRVLPAVLYE 331
Query: 279 EFPSRED 285
F ++ +
Sbjct: 332 RFSNQRE 338
>gi|242021693|ref|XP_002431278.1| TFIIH basal transcription factor complex p52 subunit, putative
[Pediculus humanus corporis]
gi|212516535|gb|EEB18540.1| TFIIH basal transcription factor complex p52 subunit, putative
[Pediculus humanus corporis]
Length = 467
Score = 143 bits (361), Expect = 8e-32, Method: Compositional matrix adjust.
Identities = 96/288 (33%), Positives = 162/288 (56%), Gaps = 40/288 (13%)
Query: 32 LEAYAIGQWERFLLQLISSAQAERSINFCSSTMKVFQRGLLIQRDKE--APRLTESGFQF 89
L+ YA+ +WE L ++ S QA+ I+ + +++ L++RD+E + +T GFQF
Sbjct: 150 LDNYAMERWECVLHYMVGS-QAQEGIS--ADAVRILLHANLMKRDEEDGSCVITREGFQF 206
Query: 90 LLMDTNAQLWYIVREYISNSQHDSMLAYERGINQADLISFLLELSFHVAGEAYNLKTLSE 149
LL+DT +Q+WY + +Y+ D++ A R ++ + ++FL +LSF G+ Y+ +SE
Sbjct: 207 LLLDTASQVWYFMLQYL-----DTVSA--RNLDLVECLTFLFQLSFSTLGKDYSTIGMSE 259
Query: 150 IQRSMIKDFADLGLVKLQQGRKESWFIPT-----IADS---------------LETNFRM 189
++ + GL+ Q+ R+ F PT IA +ETN+R+
Sbjct: 260 GLLVFLQHLREFGLI-YQRKRRGGRFYPTRLALNIACGENKSLQQMNKEGYIIIETNYRV 318
Query: 190 YAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKESLYNAVENGLTAEQ------QNAHPR 243
YAY+ S L +L LF ++ Y+ PNL VG IT++S+ A ++G+TAEQ +AHPR
Sbjct: 319 YAYTDSNLQVALLGLFCEMLYRFPNLSVGLITRDSVRQAFKSGITAEQIVGFLRLHAHPR 378
Query: 244 -VADRIPSVLENVCDQIRLWESDLNRVEMTPAHYYDEFPSREDSKKMR 290
+A P++ V DQI+LWE++LNR+ + Y +F S+ D + +R
Sbjct: 379 MIAVGPPTLPPTVVDQIKLWENELNRLVYSDGVLYSQFLSQADFEALR 426
>gi|170039509|ref|XP_001847575.1| TFIIH basal transcription factor complex p52 subunit [Culex
quinquefasciatus]
gi|167863052|gb|EDS26435.1| TFIIH basal transcription factor complex p52 subunit [Culex
quinquefasciatus]
Length = 492
Score = 143 bits (361), Expect = 9e-32, Method: Compositional matrix adjust.
Identities = 92/304 (30%), Positives = 159/304 (52%), Gaps = 51/304 (16%)
Query: 29 LEDLEAYAIGQWERFLLQLISSAQAERSI---NFCSSTMKVFQRGLLIQRDKE--APRLT 83
+E L+ YA+ +W R +L + A + + + +++ L++RD+ +P +T
Sbjct: 157 IEFLDGYAMSRW-RCVLHYMVGAGSSKGMEGEGISPDAVRILLHANLMKRDETDGSPVIT 215
Query: 84 ESGFQFLLMDTNAQLWYIVREYISNSQHDSMLAYERGINQADLISFLLELSFHVAGEAYN 143
GFQFLL+DT AQ+W+ + +Y+ + RG++ A+ +S L +LSF G Y+
Sbjct: 216 RQGFQFLLLDTQAQVWHFMLQYLDTCE-------ARGLDLAECLSMLFQLSFSTLGRDYS 268
Query: 144 LKTLSEIQRSMIKDFADLGLVKLQQGRKESWF--------------IPTIADS------- 182
+ LS+ + ++ + GLV Q+ RKE F +PTI +
Sbjct: 269 SEGLSQGLLTFLQHLREFGLV-YQRKRKEGRFYPTRLAHNITSRNAVPTIQEDGSAAQDK 327
Query: 183 ----LETNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKESLYNAVENGLTAEQ- 237
+ETN+R+YAY+ S L +L LF+++ Y+ PNL+VG +T++S+ A G+TA+Q
Sbjct: 328 GYIVVETNYRVYAYTDSNLQVALLGLFTELLYRFPNLVVGVLTRDSVRQAFRGGITADQI 387
Query: 238 -----QNAHP------RVADRIPSVLENVCDQIRLWESDLNRVEMTPAHYYDEFPSREDS 286
Q+AHP + + ++ V DQI+LWE++ NR T Y++F S+ D
Sbjct: 388 ISYLEQHAHPTMHNVEQTINTKSALPPTVVDQIKLWENERNRFTYTEGVVYNQFLSQGDF 447
Query: 287 KKMR 290
+R
Sbjct: 448 NTLR 451
>gi|409048320|gb|EKM57798.1| hypothetical protein PHACADRAFT_171015 [Phanerochaete carnosa
HHB-10118-sp]
Length = 472
Score = 143 bits (361), Expect = 9e-32, Method: Compositional matrix adjust.
Identities = 96/296 (32%), Positives = 154/296 (52%), Gaps = 48/296 (16%)
Query: 27 PTLEDLEAYAIGQWERFLLQLISSAQAERSINFCSSTMKVFQR-GLLIQRDKEAPRLTES 85
P++E L+AYA+ +WE L ++SS A R + + QR GL+ + ++T
Sbjct: 142 PSIEVLDAYALERWETILHYMVSSGIATRP---SQGVLFLLQRSGLMASIHGGSLQITSL 198
Query: 86 GFQFLLMDTNAQLWYIVREYISNSQHDSMLAYERGINQADLISFLLELSFHVAGEAYNLK 145
GFQFLL +AQLW ++ +Y+ + ER ++ +++SFL LS G Y+++
Sbjct: 199 GFQFLLHSPHAQLWELLLQYLH-------MVEERQMDLVEVLSFLFMLSTMELGREYSVE 251
Query: 146 TLSEIQRSMIKDFADLGLVKLQQGRKESWFIPT-IADS---------------------- 182
LS Q +M++D D G++ Q+ F PT +A +
Sbjct: 252 HLSPTQTAMLEDLRDYGII-WQRRATSKRFCPTRLATTLTSSSPPLPAAGGVSASAHGQG 310
Query: 183 ---LETNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKESLYNAVENGLTAEQ-- 237
LETN+R+YAY+ + L +L LF ++ + PNL+VGAIT+ES+ A+ NG+TA+Q
Sbjct: 311 FIILETNYRLYAYTDNPLQIAVLNLFVTLKSRYPNLVVGAITRESVKKALTNGITADQAS 370
Query: 238 --------QNAHPRVADRIPSVLENVCDQIRLWESDLNRVEMTPAHYYDEFPSRED 285
+AHP++ P + V DQIRLWE + NR++ + Y F S+ D
Sbjct: 371 RQIISYLTTHAHPQMRKNKPLLPVTVQDQIRLWELEKNRMKSQEGYLYTAFASQAD 426
>gi|91094191|ref|XP_971121.1| PREDICTED: similar to TFIIH basal transcription factor complex p52
subunit [Tribolium castaneum]
gi|270010854|gb|EFA07302.1| hypothetical protein TcasGA2_TC015892 [Tribolium castaneum]
Length = 472
Score = 143 bits (360), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 95/330 (28%), Positives = 169/330 (51%), Gaps = 62/330 (18%)
Query: 32 LEAYAIGQWERFLLQLISSAQAERSINFCSSTMKVFQRGLLIQRDKE--APRLTESGFQF 89
L+AY++ +WE L ++ S Q E + +++ L++RD+E +P +T GFQF
Sbjct: 152 LDAYSLERWECVLHYMVGSQQQE---GISADAVRILLHAGLMKRDEEDGSPVITRQGFQF 208
Query: 90 LLMDTNAQLWYIVREYISNSQHDSMLAYERGINQADLISFLLELSFHVAGEAYNLKTLSE 149
LL+D AQ+W+ + +Y+ + +RG++ + ++FL +LSF G+ Y+ + +S
Sbjct: 209 LLLDRQAQVWHFLLQYLDTVE-------QRGLSLVECLTFLFQLSFSTLGKDYSTEGMSP 261
Query: 150 IQRSMIKDFADLGLVKLQQGRKESWFIPT-----IADS------------------LETN 186
++ + GLV Q+ RK F PT I S +ETN
Sbjct: 262 GLLIFLQHLREFGLV-YQRKRKAGRFYPTRLALNITCSQGPETRILEEDTPKGYIIVETN 320
Query: 187 FRMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKESLYNAVENGLTAEQ------QNA 240
+R+YAY+ S L ++ LF+++ Y+ PNL+VG IT++S+ A++ G+TA+Q Q+A
Sbjct: 321 YRVYAYTDSNLQVALIGLFTELMYRFPNLVVGVITRDSIRQALKGGITADQIIGYLKQHA 380
Query: 241 HPRV--ADRIPSVLENVCDQIRLWESDLNRVEMTPAHYYDEFPSRED------------- 285
HP++ + + V DQI+LWE + NR+ + Y +F S+ D
Sbjct: 381 HPQMLEGEAKHPLPPTVVDQIKLWEIERNRLTYSEGVLYSQFLSQADFNILKEYAQSNGH 440
Query: 286 -----SKKMRLVVNAEIHMHMREFLRGQNK 310
+K L++N H +++F + +K
Sbjct: 441 LIWCNKEKRTLIINKSAHDDVKKFWKRYSK 470
>gi|301098671|ref|XP_002898428.1| general transcription factor IIH subunit, putative [Phytophthora
infestans T30-4]
gi|262105199|gb|EEY63251.1| general transcription factor IIH subunit, putative [Phytophthora
infestans T30-4]
Length = 483
Score = 142 bits (358), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 94/336 (27%), Positives = 160/336 (47%), Gaps = 73/336 (21%)
Query: 13 LPREPMPSGITARLPTLEDLEAYAIGQWERFLLQLISSAQAERSINFCSSTMKVFQRGLL 72
LPR+P + DLE YA +W+ L ++ S + S + + R L
Sbjct: 122 LPRDPENTFAAV------DLERYARARWDLVLHYMVGSTAVQEP---PQSVVDILLRTKL 172
Query: 73 IQR---DKEAPRLTESGFQFLLMDTNAQLWYIVREYISNSQHDSMLAYERGINQADLISF 129
+Q D A +T++G++F+L D + Q+W + EYI + L Q D++ F
Sbjct: 173 LQASGADSRALHITDTGYEFMLKDIHVQMWIFMLEYIRTLDNTGTL------KQEDILQF 226
Query: 130 LLELSFHVAGEAYNLKTLSEIQRSMIKDFADLGLVKLQQGRKESWFIPTIADSL------ 183
L ++S+ G Y + L+E QR ++ DF D GL+ ++ + ++ ++A +L
Sbjct: 227 LFQISYCQTGGYYAVADLTETQRLLLGDFIDFGLLFRKRQNSDRFYTTSLAVNLIFGGST 286
Query: 184 -------------------------------------------ETNFRMYAYSTSKLHCE 200
ETNF++YAY++S LH
Sbjct: 287 GQKRSHVSLTSSFAGVRAGMKSQVADPRQAPTVDHGARLLVVVETNFKIYAYTSSTLHVA 346
Query: 201 ILRLFSKIEYQLPNLIVGAITKESLYNAVENGLTAEQ------QNAHPRVADRIPSVLEN 254
+L +F I +LPNL +G IT+ESL +A+ +G++A+Q ++AHP++ P + EN
Sbjct: 347 MLSVFVDIVARLPNLAIGFITRESLRSALIHGISAQQIYDFLMKHAHPKMRRNSPVIPEN 406
Query: 255 VCDQIRLWESDLNRVEMTPAHYYDEFPSREDSKKMR 290
+ DQI LWE + NRV+ +D F ++ED + +R
Sbjct: 407 IADQIYLWERERNRVQFLEGILFDGFNTKEDYESVR 442
>gi|431907067|gb|ELK11185.1| General transcription factor IIH subunit 4 [Pteropus alecto]
Length = 447
Score = 141 bits (356), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 96/320 (30%), Positives = 163/320 (50%), Gaps = 60/320 (18%)
Query: 29 LEDLEAYAIGQWERFLLQLISSAQAERSINFCSSTMKVFQRGLLIQRDK-EAPRLTESGF 87
+ L+ YA +WE L ++ S A S + + Q GL+ + E P +T +GF
Sbjct: 146 VPSLDKYAEERWEVVLHFMVGSPSAAVSQDLAQ---LLSQAGLMKSTEPGEPPCITSAGF 202
Query: 88 QFLLMDTNAQLWYIVREYISNSQHDSMLAYERGINQADLISFLLELSFHVAGEAYNLKTL 147
QFLL+DT AQLWY + +Y+ +Q RG++ +++SFL +LSF G+ Y+++ +
Sbjct: 203 QFLLLDTPAQLWYFMLQYLQTAQ-------SRGMDLVEILSFLFQLSFSTLGKDYSVEGM 255
Query: 148 SEIQRSMIKDFADLGLVKLQQGRKESWFIPT-IADSL-------------------ETNF 187
S+ + ++ + GLV Q+ RK + PT +A +L ETN+
Sbjct: 256 SDSLLNFLQHLREFGLV-FQRKRKSRRYYPTRLAINLSSGVSGAGGTAHQPGFIVVETNY 314
Query: 188 RMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKESLYNAVENGLTAEQQNAHPRVADR 247
R+YAY+ S+L ++ LFS++ Y+ PN++V +T+ES+ A+ +G+TA+Q
Sbjct: 315 RLYAYTESELQIALIALFSEMLYRFPNMVVAQVTRESVQQAIASGITAQQ---------- 364
Query: 248 IPSVLENVCDQIRLWESDLNRVEMTPAHYYDEFPSR------------------EDSKKM 289
P + + DQIRLWE + +R+ T Y++F S+ E+S K
Sbjct: 365 TPVLPPTITDQIRLWELERDRLRFTEGVLYNQFLSQVDFELLLAHARELGVLVFENSAKR 424
Query: 290 RLVVNAEIHMHMREFLRGQN 309
+VV H ++ F + Q
Sbjct: 425 LMVVTPAGHSDVKRFWKRQK 444
>gi|440791255|gb|ELR12502.1| TFIIH basal transcription factor complex subunit 2, putative
[Acanthamoeba castellanii str. Neff]
Length = 304
Score = 141 bits (356), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 79/251 (31%), Positives = 140/251 (55%), Gaps = 33/251 (13%)
Query: 63 TMKVFQRG--LLIQRDKEAPRLTESGFQFLLMDTNAQLWYIVREYISNSQHDSMLAYERG 120
+ + RG +++ + ++ R+ + GF FLL D Q+W ++ Y+ + Q E
Sbjct: 13 VVSLLTRGEFMVVHEEDQSIRIADKGFPFLLKDLRTQVWILLLLYLRSLQ-------EEK 65
Query: 121 INQADLISFLLELSFHVAGEAYNLKTLSEIQRSMIKDFADLGLVKLQQGRKESWFIPT-I 179
N D++SFL LSF GE Y + L+ + +++D DLG++ ++ R W PT +
Sbjct: 66 ANVHDVLSFLFRLSFLTVGEGYQMDDLAFSESGLLQDLQDLGII-YRKHRDSKWLYPTQL 124
Query: 180 ADSLE----------------TNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKE 223
A L T++R+YAY++S + +L LF++IEYQLPN+++G + +E
Sbjct: 125 AIGLSSTEAAKRDQEGWIIVGTDYRIYAYTSSPVKLLLLSLFTQIEYQLPNMVMGILLRE 184
Query: 224 SLYNAVENGLTAEQ------QNAHPRVADRIPSVLENVCDQIRLWESDLNRVEMTPAHYY 277
++ AV+ G++A Q NAHP++ P + E++ DQ+RLWE++ R+ ++P ++Y
Sbjct: 185 NIRQAVQVGISANQILQFLETNAHPQMKQNTPIIPESIADQLRLWEAEDRRLSLSPGYFY 244
Query: 278 DEFPSREDSKK 288
D+F S KK
Sbjct: 245 DDFASLAAFKK 255
>gi|340371925|ref|XP_003384495.1| PREDICTED: general transcription factor IIH subunit 4-like
[Amphimedon queenslandica]
Length = 446
Score = 141 bits (356), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 95/316 (30%), Positives = 155/316 (49%), Gaps = 38/316 (12%)
Query: 1 SNLWKHLINGGALPREPMPSGITARLPTLEDLEAYAIGQWERFLLQLISSAQAERSINFC 60
+NL + GG L P G + L YA +WE L ++ ++
Sbjct: 104 TNLRILICGGGQLWAVPGHRGDDKHSRDIPYLNDYADKKWENILNFMVGGSE-----KLD 158
Query: 61 SSTMKVFQ-RGLLIQRDKEAPR-LTESGFQFLLMDTNAQLWYIVREYISNSQHDSMLAYE 118
S ++V Q GL+ Q P +T GFQFLLMDT +Q+W + +Y++ +Q +
Sbjct: 159 SEIVQVLQYAGLMSQASSRHPSFITTLGFQFLLMDTQSQIWQFILQYLNTAQ-------D 211
Query: 119 RGINQADLISFLLELSFHVAGEAYNLKTLSEIQRSMIKDFADLGLVKLQQGRKESWFIPT 178
RG++ D + F+ +LSF G+ Y+ K L+E Q + + GLV ++ + ++
Sbjct: 212 RGMDLIDCLKFIFQLSFSTLGKDYSTKGLTESQLTFMYHLCQFGLVYQRKSSSKRYYPTK 271
Query: 179 IADSL------------------ETNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAI 220
+ L ETN+R+ AY+ SKLH L LF +++Y+ PN+ VG I
Sbjct: 272 LVIQLTAGETIGMNTSQAGFIIVETNYRVIAYTDSKLHIATLALFCQMQYRFPNVAVGTI 331
Query: 221 TKESLYNAVENGLTAEQ------QNAHPRVADRIPSVLENVCDQIRLWESDLNRVEMTPA 274
T+ES+ A+ +G+ A+Q Q+AH + + + V DQI+LWE + NR+
Sbjct: 332 TRESIQQALVHGIKADQIISFLTQHAHHNMLSKAHILPPTVTDQIKLWEIERNRLSFQEG 391
Query: 275 HYYDEFPSREDSKKMR 290
Y EF S D +K++
Sbjct: 392 ILYSEFLSVTDYEKVK 407
>gi|357618296|gb|EHJ71332.1| putative TFIIH basal transcription factor complex p52 subunit
[Danaus plexippus]
Length = 603
Score = 141 bits (355), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 91/299 (30%), Positives = 155/299 (51%), Gaps = 54/299 (18%)
Query: 32 LEAYAIGQWERFLLQLISSAQAERSINFCSSTMKVFQRGLLIQRDKE--APRLTESGFQF 89
L+AYA+ +WE L ++ S Q E + +++ + L+ RD E +T +GFQF
Sbjct: 279 LDAYALERWECVLHYMVGSTQTE---GISADAVRILLQAGLMNRDAEDGTAVITRAGFQF 335
Query: 90 LLMDTNAQLWYIVREYISNSQHDSMLAYERGINQADLISFLLELSFHVAGEAYNLKTLSE 149
LL+ T Q+W ++ Y+ ++ +R ++ A+ ++FL +LSF G+ Y+ + +S
Sbjct: 336 LLLSTAKQVWLFLQHYLHTAE-------KRSLSAAECLAFLYQLSFSTLGKDYSTEGMSN 388
Query: 150 IQRSMIKDFADLGLVKLQQGRKESWFIPT--------IADSL--------------ETNF 187
++ + GLV Q+ RK F PT + D + ETN+
Sbjct: 389 NMLVFLQHLREFGLV-YQRKRKAGRFYPTRLALNITCVKDGVAPLQTAASSGYIIAETNY 447
Query: 188 RMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKESLYNAVENGLTAEQ------QNAH 241
R+YAY+TS L +L LF+++ Y+ PN++VG +T+ES+ A+ G++A+Q Q++H
Sbjct: 448 RVYAYTTSALQVALLGLFTELVYRFPNVVVGVLTRESVRAALRGGISAQQIITYLEQHSH 507
Query: 242 P----------RVADRIPSVLENVCDQIRLWESDLNRVEMTPAHYYDEFPSREDSKKMR 290
P R + +P V DQIRLWES+ NR T Y++F S+ + +R
Sbjct: 508 PQMLKSDQGGIRSSSSLPP---TVLDQIRLWESERNRFTYTEGVVYNQFLSQAEFNVLR 563
>gi|213402795|ref|XP_002172170.1| transcription factor TFIIH complex subunit Tfb2
[Schizosaccharomyces japonicus yFS275]
gi|212000217|gb|EEB05877.1| transcription factor TFIIH complex subunit Tfb2
[Schizosaccharomyces japonicus yFS275]
Length = 444
Score = 140 bits (353), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 88/288 (30%), Positives = 146/288 (50%), Gaps = 38/288 (13%)
Query: 29 LEDLEAYAIGQWERFLLQLISSAQAERSINFCSSTMKVFQRGLLIQRDKEAPRLTESGFQ 88
+E L+ YA WE L ++ ++ + + + +RG L+ K R+T SGFQ
Sbjct: 128 IEFLDKYATDTWETILHFMVGTSVKKIP---GEGVLSLLRRGGLMTGTKNQVRITHSGFQ 184
Query: 89 FLLMDTNAQLWYIVREYISNSQHDSMLAYERGINQADLISFLLELSFHVAGEAYNLKTLS 148
FLL D N Q+W ++ EY+ S+ M + ++ FL L G Y++ L+
Sbjct: 185 FLLQDINTQIWTLLLEYLKLSEDTHM-------DPVQVLHFLFMLGSLELGRDYSVHFLT 237
Query: 149 EIQRSMIKDFADLGLVKLQQGRKESWFIPTIADSL----------------------ETN 186
+ Q+ M++D + GLV ++ ++ +A SL ETN
Sbjct: 238 DTQQIMLEDLREYGLVYQKKSSSRRFYPTRLATSLTTEYHSPVKGAGSDAGKGFIIVETN 297
Query: 187 FRMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKESLYNAVENGLTAEQ------QNA 240
+R+YAY+ S L IL LF+ + + NLIVG IT++S+ A+++G+TAEQ +A
Sbjct: 298 YRLYAYTDSPLQIAILGLFTNLRARFSNLIVGVITRDSIRRALQSGITAEQIITYLTTHA 357
Query: 241 HPRVADRIPSVLENVCDQIRLWESDLNRVEMTPAHYYDEFPSREDSKK 288
HP++ IP + + DQI LWE + NR+ TP + +F + +D +K
Sbjct: 358 HPQMRKEIPLLPPTLVDQIYLWELERNRLRATPGILFRDFLTDKDFEK 405
>gi|325181847|emb|CCA16302.1| general transcription factor IIH subunit putative [Albugo laibachii
Nc14]
Length = 473
Score = 140 bits (352), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 86/298 (28%), Positives = 154/298 (51%), Gaps = 47/298 (15%)
Query: 31 DLEAYAIGQWERFLLQLISSAQAERSINFCSSTMKVFQRGLLIQR--DKEAPRLTESGFQ 88
+LE YA W+ L ++ S + + + + R L+Q D+ A +T+ G++
Sbjct: 145 ELERYARSHWDAVLHYMVGSTSVP---DPPQAVVDILLRTNLMQASVDQRALHITDKGYE 201
Query: 89 FLLMDTNAQLWYIVREYISNSQHDSMLAYERGINQADLISFLLELSFHVAGEAYNLKTLS 148
F+L D + Q+W + EYI L + Q D++ FL ++S+ Y ++ L+
Sbjct: 202 FMLKDIHIQMWIFILEYIKT------LDRTGALKQEDILRFLFQISYCQVNAYYPVQDLT 255
Query: 149 EIQRSMIKDFADLGLVKLQQGRKESWFIPTIADSL------------------------- 183
+ Q+ ++ DF + GL+ ++ + ++ ++A +L
Sbjct: 256 KTQQLLLTDFNNFGLLYRKRSNSDRFYTTSLAINLIFGGTTTSNYSETQVARPRMSSMSD 315
Query: 184 -----ETNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKESLYNAVENGLTAEQ- 237
ETNF++YAY+TS LH +L +F I +LPNL +G IT+ESL +A+ +G++A+Q
Sbjct: 316 LLTIVETNFKVYAYTTSTLHIAMLSVFVDIVARLPNLAIGFITRESLRSALVHGISAQQI 375
Query: 238 -----QNAHPRVADRIPSVLENVCDQIRLWESDLNRVEMTPAHYYDEFPSREDSKKMR 290
++AHPR+ P V EN+ DQI LWE + NR++ +D F S+E+ +++R
Sbjct: 376 YDFLLKHAHPRMKKNNPIVPENIADQIYLWEKERNRIKFLEGILFDGFNSKEEFEQVR 433
>gi|358057347|dbj|GAA96696.1| hypothetical protein E5Q_03367 [Mixia osmundae IAM 14324]
Length = 467
Score = 140 bits (352), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 89/290 (30%), Positives = 146/290 (50%), Gaps = 47/290 (16%)
Query: 28 TLEDLEAYAIGQWERFLLQLISSAQAERSINFCSSTMKVF-QRGLLIQRDKEAPRLTESG 86
++ L+ YA QW+ L L+ S ERS + + + GLL D++ R+T G
Sbjct: 146 SIPQLDEYATDQWDSLLHCLVGS---ERSQQPSKAVIDLLVAAGLLSSGDRDTRRITSLG 202
Query: 87 FQFLLMDTNAQLWYIVREYISNSQHDSMLAYERGINQADLISFLLELSFHVAGEAYNLKT 146
FQFLL D N+QLW ++ Y+ L+ + G + ++I+ + ++ G Y+ +T
Sbjct: 203 FQFLLEDVNSQLWSLLLHYLK-------LSEDAGTDLKEVIALVFQIGNQELGRVYSSET 255
Query: 147 LSEIQRSMIKDFADLGLV-------------------------KLQQGRKESWFIPTIAD 181
L+ +Q ++K F LGLV K +E F+
Sbjct: 256 LNPLQLHILKTFGGLGLVYVYKSGDYSPTRLAVTLTSGAPPLLKAGTAEEEQGFL----- 310
Query: 182 SLETNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKESLYNAVENGLTAEQ---- 237
LETN+R+YAY+ + L +L LF ++ + P L+VG IT+ES+ + NG+ ++Q
Sbjct: 311 ILETNYRVYAYTQNPLQIAVLNLFVALKSRFPGLVVGMITRESIKAGLANGIKSDQIIAF 370
Query: 238 --QNAHPRVADRIPSVLENVCDQIRLWESDLNRVEMTPAHYYDEFPSRED 285
+AHP++ + P + V DQI+LWE + NRV+ P YD+F S+ D
Sbjct: 371 LTAHAHPQMRKQEPLLPPTVVDQIKLWEREKNRVKTEPCFLYDDFRSQAD 420
>gi|198428509|ref|XP_002131018.1| PREDICTED: similar to General transcription factor II H,
polypeptide 4 [Ciona intestinalis]
Length = 463
Score = 139 bits (351), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 102/324 (31%), Positives = 159/324 (49%), Gaps = 50/324 (15%)
Query: 2 NLWKHLINGGALPREPMPS----GITARLPTLEDLEAYAIGQWERFLLQLISSAQAERSI 57
NL K L+ GG EP S G +E L+ YA +WE L L+ S E +
Sbjct: 113 NLQKALVGGG----EPWSSTAHLGPDKHGKDIESLDKYASERWEMLLHYLVGS---ETNS 165
Query: 58 NFCSSTMKVFQRGLLIQRDKEAPR----LTESGFQFLLMDTNAQLWYIVREYISNSQHDS 113
+ + L+++ E R +T GFQFLL+D +Q+WY V EY+
Sbjct: 166 TISQDIKDLINQAGLMKQGSEGGRSYSIITAKGFQFLLLDNASQVWYFVLEYLD------ 219
Query: 114 MLAYERGINQADLISFLLELSFHVAGEAYNLKTLSEIQRSMIKDFADLGLVKLQQGRKES 173
ERG+N ++ F+ ELSF G+ + ++ F ++GLV +Q+ RK
Sbjct: 220 -WVRERGMNLVPILRFIFELSFSSPGKDLPTDGRDDHVLICLQHFREMGLV-MQRKRKSR 277
Query: 174 WFIPT-IADSL--------------------ETNFRMYAYSTSKLHCEILRLFSKIEYQL 212
F PT +A +L ETNFR+YAY+ S+L IL LF K+ Y+
Sbjct: 278 RFYPTYLAINLANRANASVTNVTNSRGFILAETNFRVYAYTDSELQYSILSLFCKMLYRF 337
Query: 213 PNLIVGAITKESLYNAVENGLTAEQ------QNAHPRVADRIPSVLENVCDQIRLWESDL 266
PN+ V +T++S+ +AV NG+TA+Q NAHP + P + + DQ+RLW +
Sbjct: 338 PNVCVLQLTRKSIQSAVVNGITADQILHYIKANAHPDMLKNDPIIAPTLADQVRLWAMER 397
Query: 267 NRVEMTPAHYYDEFPSREDSKKMR 290
+R+ Y++F +++D + +R
Sbjct: 398 DRLTYRDGVLYNQFLAQKDFEVLR 421
>gi|402224480|gb|EJU04542.1| transcription factor Tfb2 [Dacryopinax sp. DJM-731 SS1]
Length = 466
Score = 139 bits (351), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 104/358 (29%), Positives = 173/358 (48%), Gaps = 67/358 (18%)
Query: 8 INGGALPRE---PMPSGITARLPTLEDLEAYAIGQWERFLLQLISSAQAERSINFCSSTM 64
+ GG R P P + E L+ YA +WE L ++SS + + S +
Sbjct: 112 LTGGGEHRSFGVPCPGARGKEVMATEQLDDYASERWESILHFMVSSGSSAGRVPPPSIAV 171
Query: 65 KVFQR--GLLI----QRDKEAPRLTESGFQFLLMDTNAQLWYIVREYISNSQHDSMLAYE 118
R GL++ +R E+ R+T GFQFLL D++ QLW ++ +Y++ S+ +
Sbjct: 172 IFLLRRSGLMVPIGAERHPES-RITSKGFQFLLEDSHTQLWELLLQYLAMSE-------D 223
Query: 119 RGINQADLISFLLELSFHVAGEAYNLKTLSEIQRSMIKDFADLGLVKLQQGRKESWFIPT 178
+G + ++I FL L G+ Y+ + LSE Q M++DF D GL+ + + F PT
Sbjct: 224 QGRDLVEVIGFLFMLGSMQLGQEYSTENLSETQDVMLQDFLDYGLIYRRNPDDHTRFYPT 283
Query: 179 ---------------------IADS-----LETNFRMYAYSTSKLHCEILRLFSKIEYQL 212
A S LETN+R+YAY+ + L +L LF + +
Sbjct: 284 RLATTLTSTSSLAFTSSKHEKAASSEGFIILETNYRVYAYTENPLQIAVLNLFVALHSRF 343
Query: 213 PNLIVGAITKESLYNAVENGLTAEQ------QNAHPRVADRIPSVLENVCDQIRLWESDL 266
NL++G +T+ES+ A+ NG+TA+Q +AHP + P + V DQIRLW+ +
Sbjct: 344 ENLVIGRLTRESIKAALANGITADQIISYLTVHAHPMMHKNNPVLPVTVQDQIRLWQLEK 403
Query: 267 NRVEMTPAHYYDEFPSR------------------EDSKKMRLVVNAEIHMHMREFLR 306
NR++ + Y++F S+ E+ +K ++ V + H ++REF+R
Sbjct: 404 NRLKSENGYLYEDFNSQGDFDLVLNYAKQLDVVLWENREKRKMFVREDGHENVREFIR 461
>gi|325181222|emb|CCA15636.1| general transcription factor IIH subunit putative [Albugo laibachii
Nc14]
Length = 1033
Score = 139 bits (351), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 86/298 (28%), Positives = 154/298 (51%), Gaps = 47/298 (15%)
Query: 31 DLEAYAIGQWERFLLQLISSAQAERSINFCSSTMKVFQRGLLIQR--DKEAPRLTESGFQ 88
+LE YA W+ L ++ S + + + + R L+Q D+ A +T+ G++
Sbjct: 192 ELERYARSHWDAVLHYMVGSTSVP---DPPQAVVDILLRTNLMQASVDQRALHITDKGYE 248
Query: 89 FLLMDTNAQLWYIVREYISNSQHDSMLAYERGINQADLISFLLELSFHVAGEAYNLKTLS 148
F+L D + Q+W + EYI L + Q D++ FL ++S+ Y ++ L+
Sbjct: 249 FMLKDIHIQMWIFILEYIKT------LDRTGALKQEDILRFLFQISYCQVNAYYPVQDLT 302
Query: 149 EIQRSMIKDFADLGLVKLQQGRKESWFIPTIADSL------------------------- 183
+ Q+ ++ DF + GL+ ++ + ++ ++A +L
Sbjct: 303 KTQQLLLTDFNNFGLLYRKRSNSDRFYTTSLAINLIFGGTTTSNYSETQVARPRMSSMSD 362
Query: 184 -----ETNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKESLYNAVENGLTAEQ- 237
ETNF++YAY+TS LH +L +F I +LPNL +G IT+ESL +A+ +G++A+Q
Sbjct: 363 LLTIVETNFKVYAYTTSTLHIAMLSVFVDIVARLPNLAIGFITRESLRSALVHGISAQQI 422
Query: 238 -----QNAHPRVADRIPSVLENVCDQIRLWESDLNRVEMTPAHYYDEFPSREDSKKMR 290
++AHPR+ P V EN+ DQI LWE + NR++ +D F S+E+ +++R
Sbjct: 423 YDFLLKHAHPRMKKNNPIVPENIADQIYLWEKERNRIKFLEGILFDGFNSKEEFEQVR 480
>gi|195126587|ref|XP_002007752.1| GI12214 [Drosophila mojavensis]
gi|193919361|gb|EDW18228.1| GI12214 [Drosophila mojavensis]
Length = 492
Score = 139 bits (349), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 94/300 (31%), Positives = 154/300 (51%), Gaps = 49/300 (16%)
Query: 32 LEAYAIGQWERFLLQLISSAQAERSIN--FCSSTMKVFQRGLLIQRD-KEAPRLTESGFQ 88
L+AYA+ +W L ++ + + +++ L++RD +E +T GFQ
Sbjct: 160 LDAYAMSRWRCVLHYMVGTGNRSNTETEAISPDAVRILLHANLMKRDEREGITITRQGFQ 219
Query: 89 FLLMDTNAQLWYIVREYISNSQHDSMLAYERGINQADLISFLLELSFHVAGEAYNLKTLS 148
FLL+DT AQ+W+ + +Y+ Q ERG+ A+ +S L +LSF G Y+ + ++
Sbjct: 220 FLLLDTRAQVWHFMLQYLDTCQ-------ERGLVLAECLSMLFQLSFSTLGRDYSSEGMN 272
Query: 149 EIQRSMIKDFADLGLVKLQQGRKESWFIPT----------IADS---------------- 182
+ ++ + GLV Q+ RKE F PT A++
Sbjct: 273 KQMLMFLQHLREFGLV-FQRKRKEHRFYPTRLALNVTNKEAAEASISVDEERMQERGYIV 331
Query: 183 LETNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKESLYNAVENGLTAEQ----- 237
+ETN+R+YAY+ S+L +L LF+++ Y+ PNL+VG +T++S+ A+ G+TAEQ
Sbjct: 332 VETNYRVYAYTDSQLQVAVLGLFTELLYRFPNLVVGVLTRDSVRQALRGGITAEQIVSYL 391
Query: 238 -QNAHPRV-----ADRIPSVL-ENVCDQIRLWESDLNRVEMTPAHYYDEFPSREDSKKMR 290
Q AHP + A + S L V DQI+LWE + NR T Y++F S+ D +R
Sbjct: 392 EQYAHPNMKLVESAIQSKSCLPPTVVDQIKLWEMERNRFTYTEGVVYNQFLSQNDFVTLR 451
>gi|170120252|ref|XP_001891159.1| predicted protein [Laccaria bicolor S238N-H82]
gi|164633568|gb|EDQ98188.1| predicted protein [Laccaria bicolor S238N-H82]
Length = 475
Score = 138 bits (348), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 88/294 (29%), Positives = 150/294 (51%), Gaps = 44/294 (14%)
Query: 29 LEDLEAYAIGQWERFLLQLISSAQAERSINFCSSTMKVFQRGLLIQRDKEAP-RLTESGF 87
+E L+ +A+ +WE L ++SS + + + QR L+ + P ++T +GF
Sbjct: 144 IEFLDVFALERWETILHYMVSSGSGQNPTKPSVRVLFLLQRSGLMTTVGQGPLQITSAGF 203
Query: 88 QFLLMDTNAQLWYIVREYISNSQHDSMLAYERGINQADLISFLLELSFHVAGEAYNLKTL 147
QFLL + QLW ++ +Y+ L ER ++ D++ FL LS G Y+ + L
Sbjct: 204 QFLLHSPHEQLWELLLQYLH-------LTEERQMDLVDVLGFLFMLSTMELGREYSTERL 256
Query: 148 SEIQRSMIKDFADLGLVKLQQGRKESWFIPTIADS------------------------L 183
S+ Q +M++D D GL+ ++ + + +A + L
Sbjct: 257 SKTQTAMLEDLVDYGLIWRRKPSSKGFHPTRLATTLTSSSPPLPSSIGNRSGPQEGFIVL 316
Query: 184 ETNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKESLYNAVENGLTAEQ------ 237
ETN+R+YAY+ + L IL LF ++Y+ PNL+VGAIT++S+ A+ NG++A+Q
Sbjct: 317 ETNYRIYAYTDNPLQTAILNLFVSLKYRFPNLVVGAITRDSVKKALLNGISADQIISYLM 376
Query: 238 QNAHPRVADRI------PSVLENVCDQIRLWESDLNRVEMTPAHYYDEFPSRED 285
+AHP++ + P + V DQIRLWE + NR++ + Y F S+ D
Sbjct: 377 SHAHPQMRKNVRLRSCNPLLPVTVQDQIRLWELEKNRLKSQEGYLYTSFASQAD 430
>gi|403163300|ref|XP_003323393.2| hypothetical protein PGTG_04930 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
gi|375163998|gb|EFP78974.2| hypothetical protein PGTG_04930 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
Length = 887
Score = 138 bits (348), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 99/356 (27%), Positives = 173/356 (48%), Gaps = 63/356 (17%)
Query: 2 NLWKHLINGGALPREPMPSGITAR-LPTLEDLEAYAIGQWERFLLQLISSAQAERSINFC 60
N + L GG +P ++ + ++++L+ Y +WE L ++ S + +
Sbjct: 160 NFRRALTGGGNHCSFGVPCNTSSNAVVSIDELDRYGTEKWETILHYMVGSRLPTKPSHNI 219
Query: 61 SSTMKVFQRGLLIQRDK---EAPRLTESGFQFLLMDTNAQLWYIVREYISNSQHDSMLAY 117
S + Q GL+ D ++ ++T GF FLL D N QLW I+ +Y+ ++ +
Sbjct: 220 LSLLG--QSGLMTSSDPRSLQSLKITSKGFGFLLEDVNTQLWDILLQYLKMTEVN----- 272
Query: 118 ERGINQADLISFLLELSFHVAGEAYNLKTLSEIQRSMIKDFADLGLVKLQQGRKESWFIP 177
G++ D+++ L L G+ Y+ + Q +++D D GLV + + F P
Sbjct: 273 --GLDVVDVLACLFMLGSLELGQEYSFSNWTPTQTQVLQDLVDYGLVLVSAPDR---FYP 327
Query: 178 T-IADSL----------------------ETNFRMYAYSTSKLHCEILRLFSKIEYQLPN 214
T +A +L ETN+R+YAY+++ L +L LF + Y+ PN
Sbjct: 328 TRLATTLTSTAPPLVSAERAQEEHGFLVLETNYRIYAYTSNPLQIAVLNLFLSLRYRFPN 387
Query: 215 LIVGAITKESLYNAVENGLTAEQ------QNAHPRVADRIPSVLENVCDQIRLWESDLNR 268
L+VGA+T+ES+ +A+ NG+TA+Q +AHP++ P + V DQIRLWE + NR
Sbjct: 388 LVVGAVTRESIKSALSNGITADQVIMYLHTHAHPQMRKLEPLLPPTVVDQIRLWELEKNR 447
Query: 269 VEMTPAHYYDEFPSRED-------SKKM-----------RLVVNAEIHMHMREFLR 306
+ + Y++F S + S+K+ +L V + H+ +REF R
Sbjct: 448 IRAQEGYLYEDFKSAAEYDSVIQYSRKLGIVLWEHAGLRKLFVGYDGHLTLREFFR 503
>gi|443894209|dbj|GAC71558.1| RNA polymerase II transcription initiation/nucleotide excision
repair factor TFIIH, subunit TFB2 [Pseudozyma antarctica
T-34]
Length = 491
Score = 138 bits (347), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 90/293 (30%), Positives = 150/293 (51%), Gaps = 44/293 (15%)
Query: 32 LEAYAIGQWERFLLQLISSAQAERSINFCSSTMKVFQRGLLIQRDKEAP----RLTESGF 87
L+ YA +WE L ++ S ++S + + +R L+Q A +T GF
Sbjct: 171 LDDYARTKWETILHYMVGS---DKSSTPREPVLYLLRRSNLMQSRSAAATASLNITSRGF 227
Query: 88 QFLLMDTNAQLWYIVREYISNSQHDSMLAYERGINQADLISFLLELSFHVAGEAYNLKTL 147
QFLL D N QLW+++ +Y+ +A ER ++ ++++FL L G Y+ + L
Sbjct: 228 QFLLEDVNTQLWHLLLQYLD-------MAEERNMDLVEVLAFLFMLGSLELGRDYSTEEL 280
Query: 148 SEIQRSMIKDFADLGLVKLQQGRKESWFIPTIADSL------------------------ 183
E Q M++DF D GLV ++ ++ +A +L
Sbjct: 281 PETQLHMLEDFRDYGLVYQRKASSRRFYPTRLATTLTSSAAAPLLSTNGSEPEERGYIIL 340
Query: 184 ETNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKESLYNAVENGLTAEQ------ 237
ETN+R+YAY+++ L +L LF I+ + PNL+VG+IT++S+ +A+ NG+TAEQ
Sbjct: 341 ETNYRLYAYTSNPLRVAVLSLFVTIKARFPNLLVGSITRDSVKSALANGITAEQIITYLT 400
Query: 238 QNAHPRVADRIPSVLENVCDQIRLWESDLNRVEMTPAHYYDEFPSREDSKKMR 290
+AH ++ P + V DQIRLWE + NRV+ + +F S+ D ++R
Sbjct: 401 HHAHLQMHRNDPLLPVTVSDQIRLWEREKNRVQQNLGSLFTDFTSQPDFAEVR 453
>gi|31201525|ref|XP_309710.1| AGAP010984-PA [Anopheles gambiae str. PEST]
gi|21293295|gb|EAA05440.1| AGAP010984-PA [Anopheles gambiae str. PEST]
Length = 501
Score = 138 bits (347), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 92/305 (30%), Positives = 155/305 (50%), Gaps = 55/305 (18%)
Query: 32 LEAYAIGQWERFLLQLISSAQAERSI---NFCSSTMKVFQRGLLIQRDKE--APRLTESG 86
L+ YA+ +W R +L + A + + + +++ L++RD+ +P +T G
Sbjct: 165 LDTYAMSRW-RCVLHYMVGAGSSKGMEGEGISPDAVRILLHANLMKRDESDGSPVITRQG 223
Query: 87 FQFLLMDTNAQLWYIVREYISNSQHDSMLAYERGINQADLISFLLELSFHVAGEAYNLKT 146
FQFLL+DT AQ+W+ + +Y+ + RG+N + +S L +LSF G Y+ +
Sbjct: 224 FQFLLLDTQAQVWHFMLQYLDTCE-------ARGLNLPECLSMLFQLSFSTLGRDYSSEG 276
Query: 147 LSEIQRSMIKDFADLGLVKLQQGRKESWFIPT-IADSL---------------------- 183
LS + ++ + GLV Q+ RKE F PT +A ++
Sbjct: 277 LSPGLLTFLQHLREFGLV-YQRKRKEGRFYPTRLAHNITSKNATHATTLAQDQESNATKD 335
Query: 184 ------ETNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKESLYNAVENGLTAEQ 237
ETN+R+YAY+ S L +L LF+++ Y+ PNL+VG ++++S+ A G+TAEQ
Sbjct: 336 KGYIIVETNYRVYAYTDSNLQVALLGLFTELLYRFPNLVVGVLSRDSVRQAFRGGITAEQ 395
Query: 238 ------QNAHP------RVADRIPSVLENVCDQIRLWESDLNRVEMTPAHYYDEFPSRED 285
Q+AHP + + S+ V DQI+LWE++ NR T Y++F S+ D
Sbjct: 396 IISYLEQHAHPTMLTVEQAINSKSSLPPTVVDQIKLWENERNRFTYTEGVVYNQFLSQAD 455
Query: 286 SKKMR 290
+R
Sbjct: 456 FITLR 460
>gi|195162678|ref|XP_002022181.1| GL25529 [Drosophila persimilis]
gi|198464237|ref|XP_001353141.2| GA20571 [Drosophila pseudoobscura pseudoobscura]
gi|194104142|gb|EDW26185.1| GL25529 [Drosophila persimilis]
gi|198149631|gb|EAL30642.2| GA20571 [Drosophila pseudoobscura pseudoobscura]
Length = 494
Score = 138 bits (347), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 92/300 (30%), Positives = 153/300 (51%), Gaps = 49/300 (16%)
Query: 32 LEAYAIGQWERFLLQLISSAQ--AERSINFCSSTMKVFQRGLLIQRD-KEAPRLTESGFQ 88
L++YA+ +W L ++ + + +++ L++RD ++ +T GFQ
Sbjct: 162 LDSYAMSRWRCVLHYMVGTGNRNGTDAEAISPDAVRILLHANLMKRDERDGITITRQGFQ 221
Query: 89 FLLMDTNAQLWYIVREYISNSQHDSMLAYERGINQADLISFLLELSFHVAGEAYNLKTLS 148
FLL+DT AQ+W+ + +Y+ + ERG++ + +S L +LSF G Y+ + ++
Sbjct: 222 FLLLDTRAQVWHFMLQYLDTCE-------ERGVSLPECLSMLFQLSFSTLGRDYSSEGMN 274
Query: 149 EIQRSMIKDFADLGLVKLQQGRKESWFIPT----------------------IADS---- 182
S ++ + GLV Q+ RKE F PT + DS
Sbjct: 275 SQMLSFLQHLREFGLV-FQRKRKEGRFYPTRLALNVTSKEAATTMTVSDEEAMQDSGYIV 333
Query: 183 LETNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKESLYNAVENGLTAE------ 236
+ETN+R+YAY+ S L +L LF+++ Y+ PNL+VG +T++S+ A+ G+TAE
Sbjct: 334 VETNYRVYAYTDSPLQVAVLGLFTELLYRFPNLVVGVLTRDSVRQALRGGITAEQIVSYL 393
Query: 237 QQNAHPRV-----ADRIPSVL-ENVCDQIRLWESDLNRVEMTPAHYYDEFPSREDSKKMR 290
QQ AHP + A + S L V DQI+LWE + NR T Y++F S+ D +R
Sbjct: 394 QQYAHPNMKLVESAIQSKSCLPPTVVDQIKLWEMERNRFTYTEGVVYNQFLSQNDFVTLR 453
>gi|443688956|gb|ELT91478.1| hypothetical protein CAPTEDRAFT_18660 [Capitella teleta]
Length = 463
Score = 138 bits (347), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 84/288 (29%), Positives = 149/288 (51%), Gaps = 39/288 (13%)
Query: 32 LEAYAIGQWERFLLQLISSAQAERSINFCSSTMKVFQRGLLIQRDKEAPR--LTESGFQF 89
LE Y++ +WE L + S + ++ + + L++ ++ +P +T +GFQF
Sbjct: 147 LEQYSMERWECVLHYMAGSKEGVSGVS--RDVVHILLHSGLMKTEQSSPDPCITPAGFQF 204
Query: 90 LLMDTNAQLWYIVREYISNSQHDSMLAYERGINQADLISFLLELSFHVAGEAYNLKTLSE 149
LL+DT+ Q+W+ + EY++ + R ++ + +SFL +LSF G+ Y+ ++++
Sbjct: 205 LLLDTSTQVWFFMIEYLNTVE-------SRKMDLVECLSFLFQLSFSTLGKDYSTESMTS 257
Query: 150 IQRSMIKDFADLGLVKLQQGRKESWFIPT-----------IADS----------LETNFR 188
Q+ ++ + GLV Q+ R F PT DS +ETN+R
Sbjct: 258 NQQRFLQHLREFGLV-YQRKRSSQRFYPTRLAVNLATGSKGGDSETASEDGFIVVETNYR 316
Query: 189 MYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKESLYNAVENGLTAEQ------QNAHP 242
+YAY+ S L ++ LF + Y+ PN+ VG ++++S+ A+ G+TAEQ +AHP
Sbjct: 317 VYAYTNSSLKVALISLFCSMMYRFPNMAVGVVSRDSVREALSRGITAEQIINFLRNHAHP 376
Query: 243 RVADRIPSVLENVCDQIRLWESDLNRVEMTPAHYYDEFPSREDSKKMR 290
R P + V DQIRLWE + +R Y++F S+ D + +R
Sbjct: 377 HTQKRKPILPPTVSDQIRLWELERDRFHFNEGVLYNQFLSQTDFEVLR 424
>gi|19113355|ref|NP_596563.1| transcription factor TFIIH complex subunit Tfb2
[Schizosaccharomyces pombe 972h-]
gi|62901133|sp|P87303.2|TFB2_SCHPO RecName: Full=RNA polymerase II transcription factor B subunit 2;
AltName: Full=RNA polymerase II transcription factor B
52 kDa subunit; AltName: Full=RNA polymerase II
transcription factor B p52 subunit
gi|3080538|emb|CAA18666.1| transcription factor TFIIH complex subunit Tfb2
[Schizosaccharomyces pombe]
Length = 447
Score = 137 bits (346), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 85/284 (29%), Positives = 146/284 (51%), Gaps = 39/284 (13%)
Query: 26 LPTLEDLEAYAIGQWERFLLQLISSAQAERSINFCSSTMKVFQRGLLIQRDKEAPRLTES 85
L T++ L+AYA WE L ++ + +A+ + + +RG L+ K R+T +
Sbjct: 125 LVTVDFLDAYAKETWETILHFMVGTPEAKFP---GEGVLSLLKRGGLMSGPKNQLRITRA 181
Query: 86 GFQFLLMDTNAQLWYIVREYISNSQHDSMLAYERGINQADLISFLLELSFHVAGEAYNLK 145
GFQFLL D NAQ+W ++ +Y+ S+ M + ++ FL L G AY++
Sbjct: 182 GFQFLLQDINAQIWTLLLDYLKLSEDTHM-------DPVQVLHFLFMLGSLDLGRAYSVD 234
Query: 146 TLSEIQRSMIKDFADLGLVKLQQGRKESWFIPTIADSL---------------------- 183
L++ Q+ M++D + GLV ++ + ++ +A L
Sbjct: 235 FLTDTQQIMLEDLREYGLVYQRKITSKRFYPTRLATGLTTDYRSLHGKQSENDDDKGFII 294
Query: 184 -ETNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKESLYNAVENGLTAEQ----- 237
ETN+R+YAY++S L I+ LF+ + + NL+VG IT++S+ A+ NG+ AEQ
Sbjct: 295 VETNYRLYAYTSSPLQIAIIGLFANLRARFSNLVVGVITRDSIRRALMNGIAAEQIITYL 354
Query: 238 -QNAHPRVADRIPSVLENVCDQIRLWESDLNRVEMTPAHYYDEF 280
+AHP++ +P + + DQI LWE + NR+ TP + +F
Sbjct: 355 TTHAHPQMRSNVPLLPPTLVDQIYLWELEKNRLRATPGILFRDF 398
>gi|427785675|gb|JAA58289.1| Putative rna polymer [Rhipicephalus pulchellus]
Length = 457
Score = 137 bits (345), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 86/288 (29%), Positives = 146/288 (50%), Gaps = 40/288 (13%)
Query: 32 LEAYAIGQWERFLLQLISSAQAERSINFCSSTMKVFQRGLLIQRDK---EAPRLTESGFQ 88
L+ YA +WE L ++ E + +++ L++ D+ +P +T GFQ
Sbjct: 141 LDQYAAERWECVLHFMVGCHTTE---GISADAVRILLHAGLMKSDEGEGSSPLITMEGFQ 197
Query: 89 FLLMDTNAQLWYIVREYISNSQHDSMLAYERGINQADLISFLLELSFHVAGEAYNLKTLS 148
FLLMDT +Q+W+ V +Y+ + RG+N + ++FL +LSF G+ Y+ + +S
Sbjct: 198 FLLMDTASQVWHFVLQYLDTLE-------SRGLNLVECLTFLFQLSFLTLGKDYSTEGMS 250
Query: 149 EIQRSMIKDFADLGLVKLQQGRKESWFIPT-----IADSL---------------ETNFR 188
E ++ + GLV Q+ R+ F PT +A L ETN+R
Sbjct: 251 ESLLVFLQHLREFGLV-YQRKRRSGRFYPTRLAINLASGLKETTLRSFEAGYIMVETNYR 309
Query: 189 MYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKESLYNAVENGLTAEQ------QNAHP 242
+YAY+ S+L +L LF ++ Y+ PNL+V +T+ES+ A+ +G+T+ Q AHP
Sbjct: 310 VYAYTNSQLQVALLALFCELLYRFPNLVVARLTRESVRQALRSGITSNQIIKFLRMYAHP 369
Query: 243 RVADRIPSVLENVCDQIRLWESDLNRVEMTPAHYYDEFPSREDSKKMR 290
+ P + + DQ+RLWE + +R Y +F S+ D + +R
Sbjct: 370 EALKQTPVIPATIMDQLRLWEMERDRFVFREGVLYSQFISQSDFQLLR 417
>gi|169784197|ref|XP_001826560.1| TFIIH and nucleotide excision repair factor 3 complexes subunit
[Aspergillus oryzae RIB40]
gi|238508739|ref|XP_002385554.1| TFIIH and nucleotide excision repair factor 3 complexes subunit
[Aspergillus flavus NRRL3357]
gi|83775305|dbj|BAE65427.1| unnamed protein product [Aspergillus oryzae RIB40]
gi|220688446|gb|EED44799.1| TFIIH and nucleotide excision repair factor 3 complexes subunit
[Aspergillus flavus NRRL3357]
gi|391868531|gb|EIT77745.1| RNA polymerase II transcription initiation protein [Aspergillus
oryzae 3.042]
Length = 480
Score = 137 bits (344), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 96/311 (30%), Positives = 159/311 (51%), Gaps = 65/311 (20%)
Query: 28 TLEDLEAYAIGQWERFLLQLISSAQ--AERSINFCSSTMKVFQRGLLIQ-RDKEAPRLTE 84
++ +L+ YA QWE L ++ ++ +R N ++ Q G L++ RD+ +T+
Sbjct: 136 SIAELDEYARRQWEGVLGYMVGTSGLGIQRDANLSKGVKQLLQAGHLVEIRDRRV-EITQ 194
Query: 85 SGFQFLLMDTNAQLWYIVREYISNSQHDSMLAYERGINQADLISFLLELSFHVAGEAYNL 144
GF F+L D + Q+W+I+ Y+ ++ D++ G++ +++SF+ LS G+AY+
Sbjct: 195 DGFAFVLQDVSTQVWHILMLYVESA--DAI-----GMSSVEVLSFVFLLSSLELGKAYDK 247
Query: 145 KTLSEIQRSMIKDFADLGLVKLQQGRKESWFIPT----------------IADSL----- 183
K L+ Q + D AD G+V Q S F PT I+ SL
Sbjct: 248 KHLTSNQLRTLTDLADFGIV-YQDSPDASHFYPTRLATTLTSDSSALSNPISGSLSGPSG 306
Query: 184 -------------ETNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKESLYNAVE 230
ETN+R+YAY++S L ++ LF+ ++Y+ PNLI G IT++S+ A+E
Sbjct: 307 TGSNKAGSGFIIVETNYRLYAYTSSPLQISLIALFTTLKYRFPNLITGKITRQSVRRAIE 366
Query: 231 NGLTAEQ------QNAHPRV------------ADRIPSVL-ENVCDQIRLWESDLNRVEM 271
G+TA+Q +AHP++ A PSVL V DQIRLW+ + +RV+
Sbjct: 367 MGITADQIISYLATHAHPQMRKHNVSRSTSNQAGIPPSVLPPTVTDQIRLWQLERDRVKA 426
Query: 272 TPAHYYDEFPS 282
TP + +F S
Sbjct: 427 TPGFLFKDFVS 437
>gi|346464903|gb|AEO32296.1| hypothetical protein [Amblyomma maculatum]
Length = 436
Score = 136 bits (343), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 87/287 (30%), Positives = 146/287 (50%), Gaps = 38/287 (13%)
Query: 32 LEAYAIGQWERFLLQLISSAQAERSINFCSSTMKVFQRGLLIQRDKE--APRLTESGFQF 89
L+ YA+ +WE +L + I+ + + GL+ + E +P +T GFQF
Sbjct: 142 LDQYAVERWE-CVLHFMVGCHTTEGIS-ADAVRILLHAGLMKSEEGEGSSPLITMEGFQF 199
Query: 90 LLMDTNAQLWYIVREYISNSQHDSMLAYERGINQADLISFLLELSFHVAGEAYNLKTLSE 149
LLMDT +Q+W+ V +Y+ + RG+N + ++FL +LSF G+ Y+ + +SE
Sbjct: 200 LLMDTPSQVWHFVLQYLDTIE-------SRGLNLVECLTFLFQLSFLTLGKDYSTEGMSE 252
Query: 150 IQRSMIKDFADLGLVKLQQGRKESWFIPT-----IADSL---------------ETNFRM 189
++ + GLV Q+ R+ F PT +A L ETN+R+
Sbjct: 253 SLLVFLQHLREFGLV-YQRKRRSGRFYPTRLAINLASGLRETNLRSYEAGYIMVETNYRV 311
Query: 190 YAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKESLYNAVENGLTAEQ------QNAHPR 243
YAY+ S+L +L LF ++ Y+ PNL+V +T+ES+ A+ +G+T+ Q AHP
Sbjct: 312 YAYTNSQLQVALLALFCELLYRFPNLVVARLTRESVRQALRSGITSNQIIKFLRMYAHPE 371
Query: 244 VADRIPSVLENVCDQIRLWESDLNRVEMTPAHYYDEFPSREDSKKMR 290
+ P + + DQ+RLWE + +R Y +F S+ D + +R
Sbjct: 372 ALKQTPVIPATIMDQLRLWELERDRFVYREGVLYSQFISQSDFQLLR 418
>gi|389749775|gb|EIM90946.1| transcription factor Tfb2 [Stereum hirsutum FP-91666 SS1]
Length = 494
Score = 136 bits (343), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 92/305 (30%), Positives = 154/305 (50%), Gaps = 54/305 (17%)
Query: 27 PTLEDLEAYAIGQWERFLLQLISSAQAERSINFCSSTMKVFQRGLLIQRDKEAPRLTESG 86
P++E L+ YA+ +WE L ++SS + + + QR L+ + ++T SG
Sbjct: 140 PSVEILDTYALERWETILHFMVSSGTGQMPTKPSQGVLYLLQRSKLMAPTQGTLQITSSG 199
Query: 87 FQFLLMDTNAQLWYIVREYISNSQHDSMLAYERGINQADLISFLLELSFHVAGEA----- 141
FQFLL +AQLW ++ +Y++ + ER ++ +++SFL LS G
Sbjct: 200 FQFLLHTPHAQLWELLLQYLA-------MVEERQMDLVEVLSFLFMLSTMELGRVRQFHD 252
Query: 142 YNLKTLSEIQRSMIKDFADLGLVKLQQGRKESWFIPT-IADS------------------ 182
Y+ ++LS+ Q++M++D D GL+ Q+ F PT +A +
Sbjct: 253 YSAESLSDTQKAMLEDLRDYGLI-WQRKATSRRFSPTRLATTLTSSLPPLPTASGTGTSG 311
Query: 183 ---------LETNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKESLYNAVENGL 233
LETN+R+YAY+ + L +L LF ++ + PNL+VG+IT++S+ A+ NG+
Sbjct: 312 TGQTQGFIILETNYRLYAYTDNPLQTAVLNLFVTMKSRFPNLVVGSITRDSVRKALSNGI 371
Query: 234 TAEQ------QNAHPRVADRI-------PSVLENVCDQIRLWESDLNRVEMTPAHYYDEF 280
TA+Q AHP++ + P + V DQIRLWE + NR++ Y F
Sbjct: 372 TADQIISYLTTYAHPQMRKNVSRCRSFTPLLPVTVQDQIRLWELERNRLKSQEGFLYTAF 431
Query: 281 PSRED 285
S+ D
Sbjct: 432 ASQAD 436
>gi|50557260|ref|XP_506038.1| YALI0F30173p [Yarrowia lipolytica]
gi|62901293|sp|Q6BZX4.1|TFB2_YARLI RecName: Full=RNA polymerase II transcription factor B subunit 2;
AltName: Full=RNA polymerase II transcription factor B
52 kDa subunit; AltName: Full=RNA polymerase II
transcription factor B p52 subunit
gi|49651908|emb|CAG78851.1| YALI0F30173p [Yarrowia lipolytica CLIB122]
Length = 467
Score = 135 bits (341), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 86/300 (28%), Positives = 150/300 (50%), Gaps = 53/300 (17%)
Query: 32 LEAYAIGQWERFLLQLISSAQAERSINFCSSTMKVFQRGLLIQRDKEAPRLTESGFQFLL 91
L+A+A+ QWE L ++ ++ + + + L++ ++ R+T +GFQFLL
Sbjct: 133 LDAHAVSQWEMILHFMVGTSIGRTP---SDGVLNLLKHSGLMEPERGGLRITNAGFQFLL 189
Query: 92 MDTNAQLWYIVREYISNSQHDSMLAYERGINQADLISFLLELSFHVAGEAYNLKTLSEIQ 151
D NAQ+W ++ +Y++ S++ M + D+++F+ L G+ Y+L LSE Q
Sbjct: 190 QDVNAQIWTLLLQYLNMSEYLQM-------DPVDVLNFIFMLGSLELGQDYSLSALSETQ 242
Query: 152 RSMIKDFADLGLVKLQQGRKESWFIPT--------------------------------I 179
+ M++D D G+V Q+ F PT
Sbjct: 243 KHMLEDLRDYGIV-YQRKASSRRFYPTRLATTLTSETAALRTASQSMEAATQDTISSSVA 301
Query: 180 ADS----LETNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKESLYNAVENGLTA 235
ADS LETNFR+YAY+ S L +L LF ++ + N++ G I ++S+ A+ NG+TA
Sbjct: 302 ADSGFIILETNFRLYAYTESPLQIAVLNLFVNLKTRFANMVTGQINRDSVRFALSNGITA 361
Query: 236 EQ------QNAHPRVADRIPSVLENVCDQIRLWESDLNRVEMTPAHYYDEFPSREDSKKM 289
EQ +AHPR+ + V DQI+LW+ +++R+ T + + EF + ++ K +
Sbjct: 362 EQIITYLSVHAHPRMKGMEHVLPPTVVDQIKLWQLEMDRIRATDGYLFSEFKNFDEYKDV 421
>gi|328766914|gb|EGF76966.1| hypothetical protein BATDEDRAFT_92242 [Batrachochytrium
dendrobatidis JAM81]
Length = 471
Score = 135 bits (341), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 101/361 (27%), Positives = 171/361 (47%), Gaps = 72/361 (19%)
Query: 7 LINGGALPREPMPS-GITARLPTLEDLEAYAIGQWERFLLQLISSAQAERSINFCSSTMK 65
L+ G+ MP I P++ LE YA WE L L+ + +R + +K
Sbjct: 115 LVGSGSHTSFGMPCETIDKHRPSIAFLETYAKECWESVLHYLVGTPSDKRP----KAIVK 170
Query: 66 VFQR-GLL--IQRDKEAP----RLTESGFQFLLMDTNAQLWYIVREYISNSQHDSMLAYE 118
+ ++ GL+ I A R+T GFQFLL D N Q+W + +Y+ +A +
Sbjct: 171 LLEKSGLMAPISSTNAAHNGDLRITSKGFQFLLQDVNVQIWAFLLQYLE-------MAEQ 223
Query: 119 RGINQADLISFLLELSFHVAGEAYNLKTLSEIQRSMIKDFADLGLVKLQQGRKESWFIPT 178
+ ++++F +L G+ Y+++ L+ Q+ M+ D LGL+ Q+ +K + F PT
Sbjct: 224 LNMELVEVLNFFFQLGSLELGQDYSVEVLTPTQKHMLDDLKHLGLI-YQRKKKSTRFYPT 282
Query: 179 -IADSL-------------------------ETNFRMYAYSTSKLHCEILRLFSKIEYQL 212
+A SL ETN+R+YAY+ S L +L LF ++ +
Sbjct: 283 HLATSLTSGASAGAVLSPRSLEADSDGFIIIETNYRVYAYTDSPLQIAVLSLFIEMRVRF 342
Query: 213 PNLIVGAITKESLYNAVENGLTAEQ------QNAHPRVADRIPSVLENVCDQIRLWESDL 266
N+++G IT++S+ A+ G++AEQ +AHP + P + + DQ+RLWE +
Sbjct: 343 ANMVIGIITRDSVREALAKGISAEQIIAYLTTHAHPEMKKGSPVLPTTIVDQVRLWEMER 402
Query: 267 NRVEMTPAHYYDEFPSRE-------------------DSKKMRLVVNAEIHMHMREFLRG 307
NR+ ++ H Y F + DSK++ +VV+AE H H++ F
Sbjct: 403 NRLRISRGHLYQMFSGEQEYREILKYATDLGYELWHSDSKRL-VVVSAEGHEHIKVFFSK 461
Query: 308 Q 308
Q
Sbjct: 462 Q 462
>gi|353240543|emb|CCA72408.1| probable TFB2-TFIIH subunit (transcription/repair factor)
[Piriformospora indica DSM 11827]
Length = 462
Score = 135 bits (341), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 87/300 (29%), Positives = 142/300 (47%), Gaps = 40/300 (13%)
Query: 19 PSGITARLPTLEDLEAYAIGQWERFLLQLISSAQAERSINFCSSTMKVFQRGLLIQRDKE 78
P LPT E L+ YA+ +W+ L +++S + S + + + L+ +
Sbjct: 126 PDNDMGTLPT-EMLDNYAVERWDTILHFMVTSGTEQASARPSEGVLYLLEHSGLMSNEHG 184
Query: 79 APRLTESGFQFLLMDTNAQLWYIVREYISNSQHDSMLAYERGINQADLISFLLELSFHVA 138
+T +GFQFLL +AQLW + Y+ M+A ++ D++ F LS
Sbjct: 185 RRIITSAGFQFLLQSPHAQLWEFILSYLR------MMAEREDMDMVDILGFFFMLSMTQP 238
Query: 139 GEAYNLKTLSEIQRSMIKDFADLGLVKLQQGRKESW-----------FIPTIADS----- 182
G+ Y+ TLS Q M+ D D GLV S+ + + +D
Sbjct: 239 GQHYSTHTLSPTQLIMVSDLRDFGLVYFPSDTTTSFQPTRFATTLTSYTSSFSDHDLTIE 298
Query: 183 -----------LETNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKESLYNAVEN 231
LETN+ +YAY+ + L +L LF + + PN+I+G++T++S+ A+ N
Sbjct: 299 NGADLSQEFVVLETNYHVYAYTNNPLQIAVLNLFVSFKARFPNMIMGSLTRDSVKKALVN 358
Query: 232 GLTAEQ------QNAHPRVADRIPSVLENVCDQIRLWESDLNRVEMTPAHYYDEFPSRED 285
G+TA+Q +AHP++ P + V DQIRLWE + +RV+ + Y EF S D
Sbjct: 359 GITADQILSYLVTHAHPQMRKNNPIIPVTVQDQIRLWELERHRVKGQDGYLYKEFASMND 418
>gi|195019521|ref|XP_001984999.1| GH16811 [Drosophila grimshawi]
gi|193898481|gb|EDV97347.1| GH16811 [Drosophila grimshawi]
Length = 493
Score = 135 bits (341), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 92/301 (30%), Positives = 150/301 (49%), Gaps = 50/301 (16%)
Query: 32 LEAYAIGQWERFLLQLISSAQAERSIN---FCSSTMKVFQRGLLIQRD-KEAPRLTESGF 87
L+ YA+ +W L ++ + + +++ L++RD ++ +T GF
Sbjct: 160 LDTYAMARWRCVLHYMVGTGSRNGGTDAEAISPDAVRILLHANLMKRDERDGITITRQGF 219
Query: 88 QFLLMDTNAQLWYIVREYISNSQHDSMLAYERGINQADLISFLLELSFHVAGEAYNLKTL 147
QFLL+DT AQ+W+ + +Y+ + ERG + + +S L +LSF G Y+ + +
Sbjct: 220 QFLLLDTRAQVWHFMLQYLETCE-------ERGFSLPECLSMLFQLSFSTLGRDYSSEGM 272
Query: 148 SEIQRSMIKDFADLGLVKLQQGRKESWFIPT----------------IADS--------- 182
S ++ + GLV Q+ RKE F PT AD
Sbjct: 273 SHQMLMFLQHLREFGLV-FQRKRKEGRFYPTRLALNVTNKDAAQASTSADDERMQERGYI 331
Query: 183 -LETNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKESLYNAVENGLTAEQ---- 237
+ETN+R+YAY+ S+L +L LF+++ Y+ PNL+VG +T++S+ A+ G+TAEQ
Sbjct: 332 VVETNYRVYAYTDSQLQVAVLGLFTELLYRFPNLVVGVLTRDSVRQALRGGITAEQIVSY 391
Query: 238 --QNAHPRV-----ADRIPSVL-ENVCDQIRLWESDLNRVEMTPAHYYDEFPSREDSKKM 289
Q AHP + A + S L V DQI+LWE + NR T Y++F S+ D +
Sbjct: 392 LEQYAHPNMKLVESAIQSKSCLPPTVVDQIKLWELERNRFTYTEGVVYNQFLSQTDFVTL 451
Query: 290 R 290
R
Sbjct: 452 R 452
>gi|195378984|ref|XP_002048261.1| GJ11446 [Drosophila virilis]
gi|194155419|gb|EDW70603.1| GJ11446 [Drosophila virilis]
Length = 492
Score = 135 bits (340), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 89/300 (29%), Positives = 150/300 (50%), Gaps = 49/300 (16%)
Query: 32 LEAYAIGQWERFLLQLISSAQ--AERSINFCSSTMKVFQRGLLIQRD-KEAPRLTESGFQ 88
L++YA+ +W L ++ + + +++ L++RD ++ +T GFQ
Sbjct: 160 LDSYAMSRWRCVLHYMVGTGSRGGTDAEAISPDAVRILLHANLMKRDERDGITITRQGFQ 219
Query: 89 FLLMDTNAQLWYIVREYISNSQHDSMLAYERGINQADLISFLLELSFHVAGEAYNLKTLS 148
FLL+DT AQ+W+ + +Y+ + ERGI + +S L +LSF G Y+ + ++
Sbjct: 220 FLLLDTRAQVWHFMLQYLETCE-------ERGICLPECLSMLFQLSFSTLGRDYSSEGMN 272
Query: 149 EIQRSMIKDFADLGLVKLQQGRKESWFIPT----------------IADS---------- 182
+ ++ + GLV Q+ RKE F PT AD
Sbjct: 273 NQMLTFLQHLREFGLV-FQRKRKEGRFYPTRLALNVTNKDAAQASTSADEERMQERGYIV 331
Query: 183 LETNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKESLYNAVENGLTAEQ----- 237
+ETN+R+YAY+ S+L +L LF+++ Y+ PNL+VG +T++S+ A+ G+TAEQ
Sbjct: 332 VETNYRVYAYTDSQLQVAVLGLFTELLYRFPNLVVGVLTRDSVRQALRGGITAEQIVSYL 391
Query: 238 -QNAHPRVADRIPSVLENVC------DQIRLWESDLNRVEMTPAHYYDEFPSREDSKKMR 290
Q AHP + ++ C DQI+LWE + NR T Y++F S+ D +R
Sbjct: 392 EQYAHPNMKLVESAIQSKSCLPPTIVDQIKLWEMERNRFTYTEGVVYNQFLSQNDFVTLR 451
>gi|339521903|gb|AEJ84116.1| general transcription factor IIH subunit 4 [Capra hircus]
Length = 463
Score = 135 bits (340), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 94/326 (28%), Positives = 162/326 (49%), Gaps = 56/326 (17%)
Query: 29 LEDLEAYAIGQWERFLLQLISSAQAERSINFCSSTMKVFQRGLLIQRDK-EAPRLTESGF 87
+ L+ YA +WE L ++ S S + + Q GL+ + E P +T +GF
Sbjct: 146 VPSLDKYAEERWEVVLHFMVGSPSVAVSQDLAQ---LLSQAGLMKSAEPGEPPCITSAGF 202
Query: 88 QFLLMDTNAQLWYIVREYISNSQHDSMLAYERGINQADLISFLLELSFHVAGEAYNLKTL 147
QFLL+DT A LWY + +Y+ +Q RG++ +++SFL +LSF G+ Y+++ +
Sbjct: 203 QFLLLDTPAHLWYFMLQYLQTAQ-------SRGMDLVEILSFLFQLSFSTLGKDYSVEGM 255
Query: 148 SEIQRSMIKDFADLGLVKLQQGRKESWFIPT-IADSL-------------------ETNF 187
S+ + ++ + GLV Q+ RK + PT +A +L ETN+
Sbjct: 256 SDSLLNFLQHLREFGLV-FQRKRKSRRYYPTRLAINLSSGVSGAGGTAHQPGFIVVETNY 314
Query: 188 RMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKESLYNAVENGLTAEQ------QNAH 241
R+YAY+ +L + LFS++ Y+ PN++V +T+ S+ A+ +G+TA+Q A
Sbjct: 315 RLYAYTEPELQIARIALFSEMLYRFPNMVVPQVTRGSVQQAIASGITAQQIVHFLRTRAD 374
Query: 242 PRVADRIPSVLENVCDQIRLWESDLNRVEMTPAHYYDEFPSR------------------ 283
P + + P + + DQIRLWE + +R+ T Y++F S+
Sbjct: 375 PVMLKQTPVLPPTITDQIRLWELERDRLRFTEGVLYNQFLSQVDFELLLAHARELGVLVF 434
Query: 284 EDSKKMRLVVNAEIHMHMREFLRGQN 309
E+S K +VV H ++ F + Q
Sbjct: 435 ENSAKRLMVVTPAGHSDVKRFWKRQK 460
>gi|195477975|ref|XP_002086439.1| GE22863 [Drosophila yakuba]
gi|194186229|gb|EDW99840.1| GE22863 [Drosophila yakuba]
Length = 499
Score = 135 bits (339), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 94/310 (30%), Positives = 153/310 (49%), Gaps = 51/310 (16%)
Query: 32 LEAYAIGQWERFLLQLISSAQ--AERSINFCSSTMKVFQRGLLIQRD-KEAPRLTESGFQ 88
L+ YA+ +W L ++ + + +++ L++RD ++ +T GFQ
Sbjct: 166 LDTYAMSRWRCVLHYMVGTGNRNGTDAEAISPDAVRILLHANLMKRDERDGITITRQGFQ 225
Query: 89 FLLMDTNAQLWYIVREYISNSQHDSMLAYERGINQADLISFLLELSFHVAGEAYNLKTLS 148
FLL+DT AQ+W+ + +Y+ + ERGI+ + +S L +LSF G Y+ + ++
Sbjct: 226 FLLLDTRAQVWHFMLQYLDTCE-------ERGISLPECLSMLFQLSFSTLGRDYSSEGMN 278
Query: 149 EIQRSMIKDFADLGLVKLQQGRKESWFIPT-----------------------IADS--- 182
+ ++ + GLV Q+ RKE F PT D
Sbjct: 279 SQMLTFLQHLREFGLV-FQRKRKEGRFYPTRLALNVTSKEAAATASVAMDEEATQDCGYI 337
Query: 183 -LETNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKESLYNAVENGLTAEQ---- 237
+ETN+R+YAY+ S L +L LF+++ Y+ PNL+VG +T++S+ A+ G+TAEQ
Sbjct: 338 VVETNYRVYAYTDSPLQVAVLGLFTELLYRFPNLVVGVLTRDSVRQALRGGITAEQIVSY 397
Query: 238 --QNAHPRV-----ADRIPSVL-ENVCDQIRLWESDLNRVEMTPAHYYDEFPSREDSKKM 289
Q AHP + A + S L V DQI+LWE + NR T Y++F S D +
Sbjct: 398 LEQYAHPNMRLVESAIQSKSCLPPTVVDQIKLWELERNRFTYTEGVVYNQFLSHTDFVTL 457
Query: 290 RLVVNAEIHM 299
R + IHM
Sbjct: 458 RDYAQS-IHM 466
>gi|194872905|ref|XP_001973103.1| GG13537 [Drosophila erecta]
gi|190654886|gb|EDV52129.1| GG13537 [Drosophila erecta]
Length = 499
Score = 135 bits (339), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 94/310 (30%), Positives = 153/310 (49%), Gaps = 51/310 (16%)
Query: 32 LEAYAIGQWERFLLQLISSAQ--AERSINFCSSTMKVFQRGLLIQRD-KEAPRLTESGFQ 88
L+ YA+ +W L ++ + + +++ L++RD ++ +T GFQ
Sbjct: 166 LDTYAMSRWRCVLHYMVGTGNRNGTDAEAISPDAVRILLHANLMKRDERDGITITRQGFQ 225
Query: 89 FLLMDTNAQLWYIVREYISNSQHDSMLAYERGINQADLISFLLELSFHVAGEAYNLKTLS 148
FLL+DT AQ+W+ + +Y+ + ERGI+ + +S L +LSF G Y+ + ++
Sbjct: 226 FLLLDTRAQVWHFMLQYLDTCE-------ERGISLPECLSMLFQLSFSTLGRDYSSEGMN 278
Query: 149 EIQRSMIKDFADLGLVKLQQGRKESWFIPT-----------------------IADS--- 182
+ ++ + GLV Q+ RKE F PT D
Sbjct: 279 SQMLTFLQHLREFGLV-FQRKRKEGRFYPTRLALNVTSKEAAATASVAMDEEATQDCGYI 337
Query: 183 -LETNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKESLYNAVENGLTAEQ---- 237
+ETN+R+YAY+ S L +L LF+++ Y+ PNL+VG +T++S+ A+ G+TAEQ
Sbjct: 338 VVETNYRVYAYTDSPLQVAVLGLFTELLYRFPNLVVGVLTRDSVRQALRGGITAEQIVSY 397
Query: 238 --QNAHPRV-----ADRIPSVL-ENVCDQIRLWESDLNRVEMTPAHYYDEFPSREDSKKM 289
Q AHP + A + S L V DQI+LWE + NR T Y++F S D +
Sbjct: 398 LEQYAHPNMRMVESAIQSKSCLPPTVVDQIKLWELERNRFTYTEGVVYNQFLSHTDFVTL 457
Query: 290 RLVVNAEIHM 299
R + IHM
Sbjct: 458 RDYAQS-IHM 466
>gi|334323685|ref|XP_003340422.1| PREDICTED: valyl-tRNA synthetase, mitochondrial-like [Monodelphis
domestica]
Length = 1641
Score = 134 bits (338), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 94/315 (29%), Positives = 157/315 (49%), Gaps = 69/315 (21%)
Query: 29 LEDLEAYAIGQWERFLLQLISSAQAERSINFCSSTMKVFQRGLLIQRDK-EAPRLTESGF 87
+ L+ YA +WE L ++ S A S + + Q GL+ + E P +T +GF
Sbjct: 146 VPSLDKYAEERWEVILHFMVGSPSAAVSQDL---AQLLSQAGLMKSSEPGEPPCITSAGF 202
Query: 88 QFLLMDTNAQLWYIVREYISNSQHDSMLAYERGINQADLISFLLELSFHVAGEAYNLKTL 147
QFLL+DT AQLWY + +Y+ +Q RG++ +++SFL +LSF G+ Y+++ +
Sbjct: 203 QFLLLDTPAQLWYFMLQYLQTAQ-------SRGMDLVEILSFLFQLSFSTLGKDYSVEGM 255
Query: 148 SEIQRSMIKDFADLGLVKLQQGRKESWFIPT-IADSL-------------------ETNF 187
S+ + ++ + GLV Q+ RK + PT +A +L ETN+
Sbjct: 256 SDSLLNFLQHLREFGLV-FQRKRKSRRYYPTRLAINLSSGVTGAGGTAHQPGFIVVETNY 314
Query: 188 RMYAYST-------------------------------SKLHCEILRLFSKIEYQLPNLI 216
R+YAY+ S+L ++ LFS++ Y+ PN++
Sbjct: 315 RLYAYTGEVGGMRMGIGMLEGRNCGFFGIILFFSLATESELQIALIALFSEMLYRFPNMV 374
Query: 217 VGAITKESLYNAVENGLTAEQ------QNAHPRVADRIPSVLENVCDQIRLWESDLNRVE 270
V IT+ES+ A+ NG+TA+Q AHP + +IP + + DQIRLWE + +R+
Sbjct: 375 VAQITRESVQQAIANGITAQQIIHFLKTRAHPVMLKQIPVLPPTITDQIRLWELERDRLR 434
Query: 271 MTPAHYYDEFPSRED 285
+ Y++F S+ D
Sbjct: 435 FSEGVLYNQFLSQVD 449
>gi|195441209|ref|XP_002068409.1| GK20438 [Drosophila willistoni]
gi|194164494|gb|EDW79395.1| GK20438 [Drosophila willistoni]
Length = 512
Score = 134 bits (338), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 93/307 (30%), Positives = 151/307 (49%), Gaps = 56/307 (18%)
Query: 32 LEAYAIGQWERFLLQLISSAQ--AERSINFCSSTMKVFQRGLLIQRD-KEAPRLTESGFQ 88
L++YA+ +W L ++ + + +++ L++RD ++ +T GFQ
Sbjct: 173 LDSYAMSRWRCVLHYMVGTGNRNGTDAEAISPDAVRILLHANLMKRDERDGITITRQGFQ 232
Query: 89 FLLMDTNAQLWYIVREYISNSQHDSMLAYERGINQADLISFLLELSFHVAGEAYNLKTLS 148
FLL+DT AQ+W+ + +Y+ + ERGI+ + +S L +LSF G Y+ + +S
Sbjct: 233 FLLLDTRAQVWHFMMQYLDTCE-------ERGISLPECLSMLFQLSFSTLGRDYSSEGMS 285
Query: 149 EIQRSMIKDFADLGLVKLQQGRKESWFIPT----------IADS---------------- 182
+ ++ + GLV Q+ RKE F PT AD+
Sbjct: 286 HQMLAFLQHLREFGLV-FQRKRKEGRFYPTRLALNVTSKESADATTAIVTMSASEEEERM 344
Query: 183 -------LETNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKESLYNAVENGLTA 235
+ETN+R+YAY+ S L +L LF+++ Y+ PNL+VG +T++S+ A+ G+TA
Sbjct: 345 QDRGYIVVETNYRVYAYTDSPLQVAVLGLFTELLYRFPNLVVGVLTRDSVRQALRGGITA 404
Query: 236 EQ------QNAHPRV-----ADRIPSVL-ENVCDQIRLWESDLNRVEMTPAHYYDEFPSR 283
EQ Q AHP + A S L V DQI+LWE + NR T Y++F S
Sbjct: 405 EQIISYLEQYAHPNMKLVESAINSKSCLPPTVVDQIKLWEMERNRFTYTEGVVYNQFLST 464
Query: 284 EDSKKMR 290
D +R
Sbjct: 465 TDFVTLR 471
>gi|16198089|gb|AAL13841.1| LD30622p [Drosophila melanogaster]
Length = 350
Score = 134 bits (338), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 94/310 (30%), Positives = 152/310 (49%), Gaps = 51/310 (16%)
Query: 32 LEAYAIGQWERFLLQLISSAQ--AERSINFCSSTMKVFQRGLLIQRD-KEAPRLTESGFQ 88
L+ YA+ +W L ++ + + +++ L++RD ++ +T GFQ
Sbjct: 17 LDTYAMSRWRCVLHYMVGTGNRNGTDAEAISPDAVRILLHANLMKRDERDGITITRQGFQ 76
Query: 89 FLLMDTNAQLWYIVREYISNSQHDSMLAYERGINQADLISFLLELSFHVAGEAYNLKTLS 148
FLL+DT AQ+W+ + +Y+ + ERGI+ + +S L +LSF G Y+ + ++
Sbjct: 77 FLLLDTRAQVWHFMLQYLDTCE-------ERGISLPECLSMLFQLSFSTLGRDYSSEGMN 129
Query: 149 EIQRSMIKDFADLGLVKLQQGRKESWFIPT-----------------------IADS--- 182
+ ++ + GLV Q+ RKE F PT D
Sbjct: 130 SQMLTFLQHLREFGLV-FQRKRKEGRFYPTRLALNVTSKEAAATASVAMDEEATQDCGYI 188
Query: 183 -LETNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKESLYNAVENGLTAEQ---- 237
+ETN+R+YAY+ S L +L LF+++ Y+ PNL+VG +T++S+ A+ G+TAEQ
Sbjct: 189 VVETNYRVYAYTDSPLQVAVLGLFTELLYRFPNLVVGVLTRDSVRQALRGGITAEQIVSY 248
Query: 238 --QNAHPRV-----ADRIPSVL-ENVCDQIRLWESDLNRVEMTPAHYYDEFPSREDSKKM 289
Q AHP + A S L V DQI+LWE + NR T Y++F S D +
Sbjct: 249 LEQYAHPNMRMVESAIHSKSCLPPTVVDQIKLWELERNRFTYTEGVLYNQFLSHTDFVTL 308
Query: 290 RLVVNAEIHM 299
R + IHM
Sbjct: 309 RDYAQS-IHM 317
>gi|159474228|ref|XP_001695231.1| predicted protein [Chlamydomonas reinhardtii]
gi|158276165|gb|EDP01939.1| predicted protein [Chlamydomonas reinhardtii]
Length = 435
Score = 134 bits (338), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 93/303 (30%), Positives = 146/303 (48%), Gaps = 41/303 (13%)
Query: 15 REPMPSGITARLPTLEDLEAYAIGQWERFLLQLISSAQAERSI-NFCSSTMKVFQRGLLI 73
R +P+ + P+LE+L +A+GQWE L L+ S+++ + + + G
Sbjct: 115 RGDVPAAAASCCPSLEELGEWAVGQWEALQLYLLGSSRSPPQLPQLLRVRARTCEDGAAA 174
Query: 74 QRDKEAPRLTESGFQFLLMDTNAQLWYIVREYISNSQHDSMLAYERGINQADLISFLLEL 133
R A +T+ F +LL + QLW ++REYIS ++ S G A +SFLL+L
Sbjct: 175 GRRSLA--VTQRSFHWLLQPGDRQLWAVLREYISGAEAAS------GDELAHTLSFLLQL 226
Query: 134 SFHVAGEAYNLKTLSEIQRSMIKDFADLGLVKLQQGRKESWFIPTIADS----------- 182
F G+ L ++ M A LG++ + QG + +
Sbjct: 227 GFRRVGQPCAWAELRPPEQRMAAHLAQLGVLAVFQGSAGAAGSGGALAARGGGAGGAAAA 286
Query: 183 ---------------LETNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKESLYN 227
+E+N+R+Y Y+ S + +L LF K E LPNL VGAI ++S+
Sbjct: 287 AAMDGGGAGSDAFVIVESNYRVYVYTRSPVTIAVLELFVKREALLPNLFVGAIRRDSILA 346
Query: 228 AVENGLTAEQQNA------HPRVADRIPSVLENVCDQIRLWESDLNRVEMTPAHYYDEFP 281
A+ G+TA++ A HP +A R P V E V DQIRLWE+ +NR++ PA Y+
Sbjct: 347 ALARGITADELVAYLSARPHPSIAARCPVVPEVVSDQIRLWEASMNRLQAHPAVLYENME 406
Query: 282 SRE 284
SR+
Sbjct: 407 SRQ 409
>gi|67541703|ref|XP_664619.1| hypothetical protein AN7015.2 [Aspergillus nidulans FGSC A4]
gi|40742471|gb|EAA61661.1| hypothetical protein AN7015.2 [Aspergillus nidulans FGSC A4]
gi|259483674|tpe|CBF79257.1| TPA: TFIIH and nucleotide excision repair factor 3 complexes
subunit (Tfb2), putative (AFU_orthologue; AFUA_4G04360)
[Aspergillus nidulans FGSC A4]
Length = 482
Score = 134 bits (338), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 91/310 (29%), Positives = 155/310 (50%), Gaps = 65/310 (20%)
Query: 29 LEDLEAYAIGQWERFLLQLISSAQ--AERSINFCSSTMKVFQRGLLIQ-RDKEAPRLTES 85
+ DL+ YA QWE L ++ ++ +R +N ++ Q G L++ RD+ +T+
Sbjct: 139 IHDLDEYARRQWEGVLGYMVGTSGLGIQRDVNLSKGVKQLLQAGHLVEIRDRRV-EITQD 197
Query: 86 GFQFLLMDTNAQLWYIVREYISNSQHDSMLAYERGINQADLISFLLELSFHVAGEAYNLK 145
GF F+L D Q+W+I+ Y+ +++ G++ +++SF+ LS G++Y K
Sbjct: 198 GFAFVLQDVGTQVWHILILYVESAE-------AIGMDSVEVLSFIFLLSSLELGKSYEKK 250
Query: 146 TLSEIQRSMIKDFADLGLVKLQQGRKESWFIPT------IADS----------------- 182
L+ Q + D AD G+V Q + S F PT +DS
Sbjct: 251 HLTSNQLRTLTDLADFGIV-YQDSPEASHFYPTRLATTLTSDSSALSNPISGALSDPDGG 309
Query: 183 -----------LETNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKESLYNAVEN 231
+ETN+R+YAY++S L ++ LF+ ++Y+ PNL+ G +T++S+ A+E
Sbjct: 310 DSNQPGSGFIIIETNYRLYAYTSSPLQISLIALFTTLKYRFPNLVTGKVTRQSIRRAIEM 369
Query: 232 GLTAEQ------QNAHPRV------------ADRIPSVL-ENVCDQIRLWESDLNRVEMT 272
G+TA+Q +AHP++ A PSVL V DQIRLW+ + +RV+ T
Sbjct: 370 GITADQIISYLATHAHPQMRKHNVARSTSNQAGMPPSVLPPTVVDQIRLWQLERDRVKAT 429
Query: 273 PAHYYDEFPS 282
+ +F S
Sbjct: 430 AGFLFKDFVS 439
>gi|115388809|ref|XP_001211910.1| conserved hypothetical protein [Aspergillus terreus NIH2624]
gi|114195994|gb|EAU37694.1| conserved hypothetical protein [Aspergillus terreus NIH2624]
Length = 460
Score = 134 bits (337), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 95/323 (29%), Positives = 161/323 (49%), Gaps = 70/323 (21%)
Query: 21 GITARLP-----TLEDLEAYAIGQWERFLLQLISSAQ--AERSINFCSSTMKVFQRGLLI 73
G+ ++LP T+ DL+ YA QWE L ++ ++ +R + ++ Q G L+
Sbjct: 104 GVLSQLPDHPPVTIADLDEYARRQWEGVLGYMVGTSGLGIQRDVTLSKGVKQLLQAGHLV 163
Query: 74 Q-RDKEAPRLTESGFQFLLMDTNAQLWYIVREYISNSQHDSMLAYERGINQADLISFLLE 132
+ RD+ +T+ GF F+L D + Q+W+I+ Y+ +++ G++ +++SF+
Sbjct: 164 EIRDRRV-EITQDGFAFVLQDVSTQVWHILILYVESAE-------AIGMDSVEVLSFVFL 215
Query: 133 LSFHVAGEAYNLKTLSEIQRSMIKDFADLGLVKLQQGRKESWFIPT-------------- 178
LS G++Y + L+ Q + D AD G+V Q + F PT
Sbjct: 216 LSSLELGKSYEKQHLTSNQLRTLTDLADFGIV-YQHSPDATHFYPTRLATTLTSDASSLS 274
Query: 179 --IADSL------------------ETNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVG 218
I+ SL ETN+R+YAY++S L ++ LF+ ++Y+ PNLI G
Sbjct: 275 NPISGSLSGPDGTSSAKAGSGFIIVETNYRLYAYTSSPLQISLIALFTTLKYRFPNLITG 334
Query: 219 AITKESLYNAVENGLTAEQ------QNAHPRV------------ADRIPSVL-ENVCDQI 259
IT++S+ A+E G+TA+Q +AHP++ A PSVL V DQI
Sbjct: 335 KITRQSVRRAIEMGITADQIISYLATHAHPQMRKHNVSRSTSNQAGIPPSVLPPTVVDQI 394
Query: 260 RLWESDLNRVEMTPAHYYDEFPS 282
RLW+ + +RV+ T + +F S
Sbjct: 395 RLWQLERDRVKATAGFLFKDFAS 417
>gi|21357821|ref|NP_648780.1| marionette [Drosophila melanogaster]
gi|7294263|gb|AAF49614.1| marionette [Drosophila melanogaster]
gi|220942562|gb|ACL83824.1| Tfb2-PA [synthetic construct]
Length = 499
Score = 134 bits (337), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 94/310 (30%), Positives = 152/310 (49%), Gaps = 51/310 (16%)
Query: 32 LEAYAIGQWERFLLQLISSAQ--AERSINFCSSTMKVFQRGLLIQRD-KEAPRLTESGFQ 88
L+ YA+ +W L ++ + + +++ L++RD ++ +T GFQ
Sbjct: 166 LDTYAMSRWRCVLHYMVGTGNRNGTDAEAISPDAVRILLHANLMKRDERDGITITRQGFQ 225
Query: 89 FLLMDTNAQLWYIVREYISNSQHDSMLAYERGINQADLISFLLELSFHVAGEAYNLKTLS 148
FLL+DT AQ+W+ + +Y+ + ERGI+ + +S L +LSF G Y+ + ++
Sbjct: 226 FLLLDTRAQVWHFMLQYLDTCE-------ERGISLPECLSMLFQLSFSTLGRDYSSEGMN 278
Query: 149 EIQRSMIKDFADLGLVKLQQGRKESWFIPT-----------------------IADS--- 182
+ ++ + GLV Q+ RKE F PT D
Sbjct: 279 SQMLTFLQHLREFGLV-FQRKRKEGRFYPTRLALNVTSKEAAATASVAMDEEATQDCGYI 337
Query: 183 -LETNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKESLYNAVENGLTAEQ---- 237
+ETN+R+YAY+ S L +L LF+++ Y+ PNL+VG +T++S+ A+ G+TAEQ
Sbjct: 338 VVETNYRVYAYTDSPLQVAVLGLFTELLYRFPNLVVGVLTRDSVRQALRGGITAEQIVSY 397
Query: 238 --QNAHPRV-----ADRIPSVL-ENVCDQIRLWESDLNRVEMTPAHYYDEFPSREDSKKM 289
Q AHP + A S L V DQI+LWE + NR T Y++F S D +
Sbjct: 398 LEQYAHPNMRMVESAIHSKSCLPPTVVDQIKLWELERNRFTYTEGVLYNQFLSHTDFVTL 457
Query: 290 RLVVNAEIHM 299
R + IHM
Sbjct: 458 RDYAQS-IHM 466
>gi|195327811|ref|XP_002030611.1| GM24480 [Drosophila sechellia]
gi|194119554|gb|EDW41597.1| GM24480 [Drosophila sechellia]
Length = 499
Score = 134 bits (337), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 94/310 (30%), Positives = 152/310 (49%), Gaps = 51/310 (16%)
Query: 32 LEAYAIGQWERFLLQLISSAQ--AERSINFCSSTMKVFQRGLLIQRD-KEAPRLTESGFQ 88
L+ YA+ +W L ++ + + +++ L++RD ++ +T GFQ
Sbjct: 166 LDTYAMSRWRCVLHYMVGTGNRNGTDAEAISPDAVRILLHANLMKRDERDGITITRQGFQ 225
Query: 89 FLLMDTNAQLWYIVREYISNSQHDSMLAYERGINQADLISFLLELSFHVAGEAYNLKTLS 148
FLL+DT AQ+W+ + +Y+ + ERGI+ + +S L +LSF G Y+ + ++
Sbjct: 226 FLLLDTRAQVWHFMLQYLDTCE-------ERGISLPECLSMLFQLSFSTLGRDYSSEGMN 278
Query: 149 EIQRSMIKDFADLGLVKLQQGRKESWFIPT-----------------------IADS--- 182
+ ++ + GLV Q+ RKE F PT D
Sbjct: 279 SQMLTFLQHLREFGLV-FQRKRKEGRFYPTRLALNVTSKEAAATASVAMDEEATQDCGYI 337
Query: 183 -LETNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKESLYNAVENGLTAEQ---- 237
+ETN+R+YAY+ S L +L LF+++ Y+ PNL+VG +T++S+ A+ G+TAEQ
Sbjct: 338 VVETNYRVYAYTDSPLQVAVLGLFTELLYRFPNLVVGVLTRDSVRQALRGGITAEQIVSY 397
Query: 238 --QNAHPRV-----ADRIPSVL-ENVCDQIRLWESDLNRVEMTPAHYYDEFPSREDSKKM 289
Q AHP + A S L V DQI+LWE + NR T Y++F S D +
Sbjct: 398 LEQYAHPNMRMVESAIHSKSCLPPTVVDQIKLWELERNRFTYTEGVLYNQFLSHTDFVTL 457
Query: 290 RLVVNAEIHM 299
R + IHM
Sbjct: 458 RDYAQS-IHM 466
>gi|221120480|ref|XP_002159945.1| PREDICTED: general transcription factor IIH subunit 4-like [Hydra
magnipapillata]
Length = 458
Score = 134 bits (337), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 95/328 (28%), Positives = 165/328 (50%), Gaps = 40/328 (12%)
Query: 1 SNLWKHLINGGALPREPMPSGITARLPTLEDLEAYAIGQWERFLLQLISSAQAERSINFC 60
+NL L GG + P+ + + L+ Y+ +WE +L ++ +Q +
Sbjct: 112 TNLRIGLCGGGPVQATPLKAVEEKHARDVAFLDNYSKERWE-CILYYMTGSQVTGNAGVS 170
Query: 61 SSTMKVF-QRGLLI-QRDKEAPRLTESGFQFLLMDTNAQLWYIVREYISNSQHDSMLAYE 118
+V GLLI ++A +T SGFQFLL+DT++Q+WY + +++ NS +L
Sbjct: 171 QDVARVLINAGLLIFDHQEQATCITSSGFQFLLLDTSSQVWYFMVQHL-NSMEPEILV-- 227
Query: 119 RGINQADLISFLLELSFHVAGEAYNLKTLSEIQRSMIKDFADLGLVKLQQGRKESWFIPT 178
+SFL + SF V G+ Y + L+E Q S ++ ++GL Q+ RK F PT
Sbjct: 228 ------QCLSFLFQTSFSVLGKDYPVNDLTEAQFSFLQLLREIGLA-FQRKRKSKRFYPT 280
Query: 179 I------------ADS---------LETNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIV 217
+DS +ETN+R+YAY+ S LH +L LF+ I+ + P+ V
Sbjct: 281 RLAINLGSAVTGNSDSSSQQQGFLVVETNYRVYAYTDSVLHIALLSLFTDIKARFPSFTV 340
Query: 218 GAITKESLYNAVENGLTAEQ------QNAHPRVADRIPSVLENVCDQIRLWESDLNRVEM 271
+++ES+ A+ G++AEQ AH ++ P + + DQI+LWE + +R+
Sbjct: 341 ALLSRESVQQALACGISAEQIIDFLKTRAHSQMTTSSPIIASTITDQIKLWEMERDRLRY 400
Query: 272 TPAHYYDEFPSREDSKKMRLVVNAEIHM 299
+ Y++F S+ D + +R + + H+
Sbjct: 401 SQGVLYNQFLSQSDFEMLRKFADEKNHL 428
>gi|156378083|ref|XP_001630974.1| predicted protein [Nematostella vectensis]
gi|156218005|gb|EDO38911.1| predicted protein [Nematostella vectensis]
Length = 471
Score = 134 bits (336), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 86/290 (29%), Positives = 148/290 (51%), Gaps = 39/290 (13%)
Query: 32 LEAYAIGQWERFLLQLISSAQ-AERSINFCSSTMKVFQRGLLIQRDKEA--PRLTESGFQ 88
L+ YAI +WE L + S + A+ + +KV L++ + P ++ +GFQ
Sbjct: 150 LDKYAIERWESVLHFMTGSTEMADNAGGVSQDVVKVLVLSGLMKCESPGSNPIISPAGFQ 209
Query: 89 FLLMDTNAQLWYIVREYISNSQHDSMLAYERGINQADLISFLLELSFHVAGEAYNLKTLS 148
FLL+D +Q+WY + + + + RG++ + +S L +LSF G+ Y L+
Sbjct: 210 FLLLDRPSQVWYFMLQCLETVE-------ARGMDLVECLSLLFQLSFSSPGKDYPTDGLT 262
Query: 149 EIQRSMIKDFADLGLVKLQQGRKESWFIPT--------------IADS--------LETN 186
+ Q ++ ++GLV Q+ RK + PT DS +ETN
Sbjct: 263 DSQMKFLQQLREIGLV-FQRKRKSRRYYPTKLSVNLTAAGKGINTTDSQIEAGFIIIETN 321
Query: 187 FRMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKESLYNAVENGLTAE------QQNA 240
+R+YAY+ S L ++ LF +I + PNL V ++T+ES A+ +G++AE Q A
Sbjct: 322 YRVYAYTESCLQVSLIGLFCEILCRFPNLCVASLTRESCQQALASGISAEQILNFLQTRA 381
Query: 241 HPRVADRIPSVLENVCDQIRLWESDLNRVEMTPAHYYDEFPSREDSKKMR 290
HP + R P + + DQ+RLWE + +R++ T Y++F S+ D + +R
Sbjct: 382 HPEMLKRTPIIPSTISDQVRLWEMERSRMKFTEGVLYNQFLSQADFEMLR 431
>gi|343428936|emb|CBQ72481.1| probable TFB2-TFIIH subunit (transcription/repair factor)
[Sporisorium reilianum SRZ2]
Length = 493
Score = 133 bits (335), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 91/301 (30%), Positives = 153/301 (50%), Gaps = 57/301 (18%)
Query: 32 LEAYAIGQWERFLLQLISSAQAERSINFCSSTMKVFQRGLLIQRDKEAPR---------- 81
L+ YA +WE L ++ S + S + + +R L+Q PR
Sbjct: 170 LDEYARTKWETILHYMVGS---DNSSTPREPVLYLLRRSNLMQ-----PRSTSTSSSSGG 221
Query: 82 --LTESGFQFLLMDTNAQLWYIVREYISNSQHDSMLAYERGINQADLISFLLELSFHVAG 139
+T GFQFLL D N QLW ++ +Y+ +A ER ++ ++++FL L G
Sbjct: 222 LNITSRGFQFLLEDVNTQLWDLLLQYLD-------MAEERNMDLVEVLAFLFMLGSLELG 274
Query: 140 EAYNLKTLSEIQRSMIKDFADLGLVKLQQGRKESWF-------------IPTIADS---- 182
Y+ + L E Q M++DF D GLV ++ ++ +P ++ +
Sbjct: 275 RDYSTEELPETQLHMLEDFRDYGLVYQRKASSRRFYPTRLATTLTSSAAVPLLSSNGTEQ 334
Query: 183 -------LETNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKESLYNAVENGLTA 235
LETN+R+YAY++++L +L LF I+ + PNL+VG+IT++S+ +A+ NG+TA
Sbjct: 335 EERGYIILETNYRLYAYTSNRLRVAVLSLFVTIKARFPNLVVGSITRDSVKSALANGITA 394
Query: 236 EQ------QNAHPRVADRIPSVLENVCDQIRLWESDLNRVEMTPAHYYDEFPSREDSKKM 289
EQ +AH ++ P + V DQIRLWE + NRV+ + +F S+ D +++
Sbjct: 395 EQIITYLTHHAHVQMHRNDPLLPVTVSDQIRLWEREKNRVQQNLGSLFTDFTSQFDFEEV 454
Query: 290 R 290
R
Sbjct: 455 R 455
>gi|194749905|ref|XP_001957376.1| GF10392 [Drosophila ananassae]
gi|190624658|gb|EDV40182.1| GF10392 [Drosophila ananassae]
Length = 497
Score = 133 bits (335), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 91/301 (30%), Positives = 150/301 (49%), Gaps = 50/301 (16%)
Query: 32 LEAYAIGQWERFLLQLISSA--QAERSINFCSSTMKVFQRGLLIQRD-KEAPRLTESGFQ 88
L+ YA+ +W L ++ + + +++ L++RD ++ +T GFQ
Sbjct: 164 LDTYAMSRWRCVLHYMVGTGSRNGAETEAISPDAVRILLHANLMKRDERDGITITRQGFQ 223
Query: 89 FLLMDTNAQLWYIVREYISNSQHDSMLAYERGINQADLISFLLELSFHVAGEAYNLKTLS 148
FLL+DT AQ+W+ + Y+ + ERG+ + +S L +LSF G Y+ + ++
Sbjct: 224 FLLLDTRAQVWHFMLHYLDTCE-------ERGMPLPECLSMLFQLSFSTLGRDYSSEGMN 276
Query: 149 EIQRSMIKDFADLGLVKLQQGRKESWFIPT------------IADSL------------- 183
+ ++ + GLV Q+ RKE F PT +A +L
Sbjct: 277 KQMLDFLQHLREFGLV-YQRKRKEGRFYPTRLALNVTSKEAAVAATLTTDEEGVQESGYI 335
Query: 184 --ETNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKESLYNAVENGLTAEQ---- 237
ETN+R+YAY+ S L +L LF+++ Y+ PNL+VG +T++S+ A+ G+TAEQ
Sbjct: 336 VVETNYRVYAYTDSPLQVAVLGLFTELLYRFPNLVVGVLTRDSVRQALRGGITAEQIVSY 395
Query: 238 --QNAHPRV-----ADRIPSVL-ENVCDQIRLWESDLNRVEMTPAHYYDEFPSREDSKKM 289
Q AHP + A + S L V DQI+LWE + NR T Y++F S+ D +
Sbjct: 396 LEQYAHPNMRLVESAIQSKSCLPPTVVDQIKLWEMERNRFTYTEGVVYNQFLSQNDFVTL 455
Query: 290 R 290
R
Sbjct: 456 R 456
>gi|407927340|gb|EKG20235.1| Transcription factor Tfb2 [Macrophomina phaseolina MS6]
Length = 466
Score = 133 bits (334), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 85/293 (29%), Positives = 142/293 (48%), Gaps = 48/293 (16%)
Query: 28 TLEDLEAYAIGQWERFLLQLISSAQAERSIN--FCSSTMKVFQRGLLIQRDKEAPRLTES 85
++E L+ A +WE L ++ S + + T + + G I+ P +T+
Sbjct: 134 SIEALDEIARAKWETILQYMVGSTGTALGVGSEITTGTKTLLEVGQFIEMRGGRPSITQG 193
Query: 86 GFQFLLMDTNAQLWYIVREYISNSQHDSMLAYERGINQADLISFLLELSFHVAGEAYNLK 145
GF FLL + NAQ+W ++ Y+ NS +M + D++SFL L G+ Y+
Sbjct: 194 GFSFLLQEVNAQVWSLLIVYLENSHRLNM-------DNVDVLSFLFMLGSLELGQDYSTD 246
Query: 146 TLSEIQRSMIKDFADLGLVKLQQGRKESWFIPT-IADSL--------------------- 183
+L+ Q+ M+ D D G+V + K + F PT +A +L
Sbjct: 247 SLTATQQHMLDDLNDFGIV-YRSPPKSNRFYPTRLATTLTSDAAALNNSDSFSSALNSTS 305
Query: 184 ----------ETNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKESLYNAVENGL 233
ETN+R+YAY++S L +L LF+ +E + PNL+ G +TKES+ A+ G+
Sbjct: 306 ASGSKGYIIIETNYRLYAYTSSPLQIAVLALFTDLETRFPNLVSGKLTKESVQRAIGLGI 365
Query: 234 TAEQ------QNAHPRVADRIPSVLENVCDQIRLWESDLNRVEMTPAHYYDEF 280
TA+Q AHP++ + P + V DQIRLW+ + +R+ T + +F
Sbjct: 366 TADQIISYLDTYAHPQMQRKTPVLPPTVVDQIRLWQIEGDRMRATEGFLFKDF 418
>gi|388857860|emb|CCF48525.1| probable TFB2-TFIIH subunit (transcription/repair factor) [Ustilago
hordei]
Length = 492
Score = 133 bits (334), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 93/300 (31%), Positives = 151/300 (50%), Gaps = 56/300 (18%)
Query: 32 LEAYAIGQWERFLLQLISSAQAERSINFCSSTMKVFQRGLLIQRDKEAPR---------- 81
L+ YA +WE L ++ S E S + + +R L+Q PR
Sbjct: 170 LDQYARNKWETILHYMVGS---ENSSTPREPVLYLLRRSNLMQ-----PRPSSGSGSGGL 221
Query: 82 -LTESGFQFLLMDTNAQLWYIVREYISNSQHDSMLAYERGINQADLISFLLELSFHVAGE 140
+T GFQFLL D N QLW ++ +Y+ +A ER ++ ++++FL L G
Sbjct: 222 NITSRGFQFLLEDVNTQLWDLLLQYLD-------MAEERNMDLVEVLAFLFMLGSLELGR 274
Query: 141 AYNLKTLSEIQRSMIKDFADLGLVKLQQGRKESWF-------------IPTIADS----- 182
Y+ + L E Q M++DF D GLV ++ ++ IP ++ +
Sbjct: 275 DYSTEELPETQLHMLEDFRDYGLVYQRKASSRRFYPTRLATTLTSSAAIPLLSSNGAEQE 334
Query: 183 ------LETNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKESLYNAVENGLTAE 236
LETN+R+YAY+++ L +L LF I+ + PNL+VG+IT++S+ +A+ NG+TAE
Sbjct: 335 ERGYIILETNYRLYAYTSNPLRVAVLSLFVTIKARFPNLVVGSITRDSVKSALANGITAE 394
Query: 237 Q------QNAHPRVADRIPSVLENVCDQIRLWESDLNRVEMTPAHYYDEFPSREDSKKMR 290
Q +AH ++ P + V DQIRLWE + NRV + +F S+ D +++R
Sbjct: 395 QIITYLTHHAHVQMHRNDPLLPVTVSDQIRLWEREKNRVVQNLGSLFTDFTSQFDFEEVR 454
>gi|121714341|ref|XP_001274781.1| TFIIH and nucleotide excision repair factor 3 complexes subunit
(Tfb2), putative [Aspergillus clavatus NRRL 1]
gi|119402935|gb|EAW13355.1| TFIIH and nucleotide excision repair factor 3 complexes subunit
(Tfb2), putative [Aspergillus clavatus NRRL 1]
Length = 478
Score = 133 bits (334), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 94/311 (30%), Positives = 157/311 (50%), Gaps = 65/311 (20%)
Query: 28 TLEDLEAYAIGQWERFLLQLISSAQ--AERSINFCSSTMKVFQRGLLIQ-RDKEAPRLTE 84
++ DL+ Y+ QWE L ++ + +R +N ++ Q G L++ RD+ +T+
Sbjct: 134 SIADLDEYSRRQWEGVLGYMVGTGGLGMQRDVNLSKGVKQLLQAGHLVEIRDRRV-EITK 192
Query: 85 SGFQFLLMDTNAQLWYIVREYISNSQHDSMLAYERGINQADLISFLLELSFHVAGEAYNL 144
GF F+L D Q+W+I+ Y+ +++ G++ +++ F+ LS G +Y
Sbjct: 193 DGFAFVLQDVGTQVWHILILYVESAE-------AIGMDSVEVLKFVFFLSSLELGRSYEK 245
Query: 145 KTLSEIQRSMIKDFADLGLVKLQQGRKESWFIPT----------------IADSL----- 183
K ++ Q + D AD G+V Q+ + + F PT IA SL
Sbjct: 246 KQMTSNQLRTLTDLADFGIV-YQESPEATHFYPTRLATTLTSDSSALSNPIAGSLSGPTG 304
Query: 184 -------------ETNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKESLYNAVE 230
ETN+R+YAY++S L ++ LF+ ++Y+ PNLI G IT++S+ AVE
Sbjct: 305 TASNKAGSGFIIIETNYRLYAYTSSPLQISLIALFTTLKYRFPNLITGKITRQSIRRAVE 364
Query: 231 NGLTAEQ------QNAHPRV----ADR-------IP-SVL-ENVCDQIRLWESDLNRVEM 271
G+TA+Q +AHP++ A R +P SVL V DQIRLW+ + +RV+
Sbjct: 365 MGITADQIISYLSTHAHPQMRKHNASRSTSNQAGMPVSVLPPTVVDQIRLWQLERDRVKA 424
Query: 272 TPAHYYDEFPS 282
TP + +F S
Sbjct: 425 TPGFLFKDFVS 435
>gi|71024427|ref|XP_762443.1| hypothetical protein UM06296.1 [Ustilago maydis 521]
gi|46097692|gb|EAK82925.1| hypothetical protein UM06296.1 [Ustilago maydis 521]
Length = 491
Score = 132 bits (333), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 89/294 (30%), Positives = 151/294 (51%), Gaps = 45/294 (15%)
Query: 32 LEAYAIGQWERFLLQLISSAQAERSINFCSSTMKVFQRGLLIQRDKEAP-----RLTESG 86
L+ YA +WE L ++ S + S + + +R L+Q + +T G
Sbjct: 170 LDQYARTKWETILHYMVGS---DNSSTPREPVLYLLRRSNLMQPRTASSSNGGLNITSRG 226
Query: 87 FQFLLMDTNAQLWYIVREYISNSQHDSMLAYERGINQADLISFLLELSFHVAGEAYNLKT 146
FQFLL D N QLW ++ +Y+ +A ER ++ ++++FL L G Y+ +
Sbjct: 227 FQFLLEDVNTQLWDLLLQYLD-------MAEERNMDLVEVLAFLFMLGSLELGRDYSTEE 279
Query: 147 LSEIQRSMIKDFADLGLVKLQQGRKESWF-------------IPTIADS----------- 182
L E Q M++DF D GLV ++ ++ +P ++ +
Sbjct: 280 LPETQLHMLEDFRDYGLVYQRKASSRRFYPTRLATTLTSSAAVPLLSSNGTEQEERGYII 339
Query: 183 LETNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKESLYNAVENGLTAEQ----- 237
LETN+R+YAY+++ L +L LF I+ + PNL+VG+IT++S+ +A+ NG+TAEQ
Sbjct: 340 LETNYRLYAYTSNPLRVAVLSLFVTIKARFPNLVVGSITRDSVKSALANGITAEQIITYL 399
Query: 238 -QNAHPRVADRIPSVLENVCDQIRLWESDLNRVEMTPAHYYDEFPSREDSKKMR 290
+AH ++ P + V DQIRLWE + NRV+ + +F S+ D +++R
Sbjct: 400 THHAHLQMHRNDPLLPVTVSDQIRLWEREKNRVQQNLGSLFTDFTSQFDFEEVR 453
>gi|402866404|ref|XP_003897374.1| PREDICTED: LOW QUALITY PROTEIN: valine--tRNA ligase, mitochondrial,
partial [Papio anubis]
Length = 1647
Score = 132 bits (333), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 100/359 (27%), Positives = 168/359 (46%), Gaps = 89/359 (24%)
Query: 29 LEDLEAYAIGQWERFLLQLISSAQAERSINFCSSTMKVFQRGLLIQRDK-EAPRLTESGF 87
+ L+ YA +WE L ++ S A S + + Q GL+ + E P +T +GF
Sbjct: 191 VPSLDKYAEERWEVVLHFMVGSPSAAVSQDLAQ---LLSQAGLMKSTEPGEPPCITSAGF 247
Query: 88 QFLLMDTNAQLWYIVREYISNSQHDSMLAYERGINQADLISFLLELSFHVAGEAYNLKTL 147
QFLL+DT AQLWY + +Y+ +Q RG++ +++SFL +LSF G+ Y+++ +
Sbjct: 248 QFLLLDTPAQLWYFMLQYLQTAQ-------SRGMDLVEILSFLFQLSFSTLGKDYSVEGM 300
Query: 148 SEIQRSMIKDFADLGLVKLQQGRKESWFIPT-IADSL-------------------ETNF 187
S+ + ++ + GLV Q+ RK + PT +A +L ETN+
Sbjct: 301 SDSLLNFLQHLREFGLV-FQRKRKSRRYYPTRLAINLSSGVSGAGGTVHQPGFIVVETNY 359
Query: 188 RMYAY---------------------------------STSKLHCEILRLFSKIEYQLPN 214
R+YAY S S+L ++ LFS++ Y+ PN
Sbjct: 360 RLYAYTGEVGQSAPEEKKEGLEGVWVWGWPPHPLSIPGSESELQIALIALFSEMLYRFPN 419
Query: 215 LIVGAITKESLYNAVENGLTAEQ------QNAHPRVADRIPSVLENVCDQIRLWESDLNR 268
++V +T+ES+ A+ +G+TA+Q AHP + + P + + DQIRLWE + +R
Sbjct: 420 MVVAQVTRESVQQAIASGITAQQIIHFLRTRAHPVMLKQTPVLPPTITDQIRLWELERDR 479
Query: 269 VEMTPAHYYDEFPSR------------------EDSKKMRLVVNAEIHMHMREFLRGQN 309
+ T Y++F S+ E+S K +VV H ++ F + Q
Sbjct: 480 LRFTEGVLYNQFLSQVDFELLLAHARELGVLVFENSAKRLMVVTPAGHSDVKRFWKRQK 538
>gi|412992641|emb|CCO18621.1| predicted protein [Bathycoccus prasinos]
Length = 542
Score = 132 bits (333), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 105/371 (28%), Positives = 157/371 (42%), Gaps = 100/371 (26%)
Query: 32 LEAYAIGQWERFLLQLISSAQAERSINFCSSTM----------------KVFQRGLLIQR 75
L+ YA +WE LL+L S A E+ K+F LI +
Sbjct: 175 LDHYAKSRWETVLLELTSEASVEKKRKKKKMMKKKGDGGAGAQHALHLRKLFYAARLITK 234
Query: 76 DKEAPRLTESGFQFLLMDTNAQLWYIVREYI----------------SNSQHDSMLAYER 119
D R+T GF FLL T+ Q+W ++ Y N + D M
Sbjct: 235 DG---RITSEGFSFLLGATSEQIWILLARYARGGDFEKKMKNKTTNEENGEGDKMETNGE 291
Query: 120 GINQ----------ADLISFLLELSFHVAGEAYNLKTLSEIQRSMIKDFADLGLV--KLQ 167
Q A ++FL+ LSF G Y+ LSE +R + + LG++
Sbjct: 292 DEKQQHKLKSDESSAAAMAFLVRLSFQHPGRKYSKANLSEAERRVASHLSALGVLYENED 351
Query: 168 QGRKESWFIPTIADS-----------------------LETNFRMYAYSTSKLHCEILRL 204
+W++PT+ + +ETNFR+YAY+ S+L E+LRL
Sbjct: 352 DENDNNWYVPTVLSAGLSSVSTTSSAKSALARIDGHIIVETNFRVYAYTHSELETEVLRL 411
Query: 205 FSKIEYQLPNLIVGAITKESLYNAVENGLTAE------QQNAHPR--VADRI--PSVLEN 254
F++ +Y+LPN VG IT++S+ +A+ G++ + Q AHPR + R P+V
Sbjct: 412 FTRPDYKLPNAYVGMITRDSILDAMRAGISPDQIVNYLQTRAHPRCTIGKRPNHPAVPPT 471
Query: 255 VCDQIRLWESDLNRVEMTPAHYYDEFPSRE--------------------DSKKMRLVVN 294
VCDQIRLW DL RV+ Y +FP + D K R V+
Sbjct: 472 VCDQIRLWARDLYRVKADDCVMYTDFPMQGNQFQDAVNNARNVGAQILWMDENKRRFAVD 531
Query: 295 AEIHMHMREFL 305
A+ H ++ FL
Sbjct: 532 ADSHERLKVFL 542
>gi|295662078|ref|XP_002791593.1| RNA polymerase II transcription factor B subunit 2
[Paracoccidioides sp. 'lutzii' Pb01]
gi|226279719|gb|EEH35285.1| RNA polymerase II transcription factor B subunit 2
[Paracoccidioides sp. 'lutzii' Pb01]
Length = 484
Score = 132 bits (332), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 93/316 (29%), Positives = 153/316 (48%), Gaps = 64/316 (20%)
Query: 24 ARLPTLEDLEAYAIGQWERFLLQLI--SSAQAERSINFCSSTMKVFQRGLLIQRDKEAPR 81
A L T+ L+ YA QWE L ++ S+ A++++ ++ Q L++
Sbjct: 130 ANLMTVAQLDEYASRQWEGVLGYMVGTSALGAQQTVTLSKGVKQLLQACHLVEVHDRRVD 189
Query: 82 LTESGFQFLLMDTNAQLWYIVREYISNSQHDSMLAYERGINQADLISFLLELSFHVAGEA 141
+T+ GF F+L D N Q+W I+ Y+ N++ + G+ +++SFL LS G++
Sbjct: 190 ITKEGFAFVLQDVNTQVWNILILYVENAE-------QIGLESVEVLSFLFVLSSLELGQS 242
Query: 142 YNLKTLSEIQRSMIKDFADLGLVKLQQGRKESW-FIPT----------------IADSL- 183
Y K L+ Q + D D G+V +E+ F PT I+ SL
Sbjct: 243 YEKKHLTSTQLKTLTDLTDFGIVYQHFPPQEATRFYPTRLVTTLTSDSATLGSSISTSLT 302
Query: 184 --------------------ETNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKE 223
ETN+R+YAY++S L ++ LF+ ++Y+ PNLI G IT++
Sbjct: 303 GPSGPTAANSSEPSTGFIVIETNYRLYAYTSSPLQISLIALFTTLKYRFPNLITGKITRQ 362
Query: 224 SLYNAVENGLTAEQ------QNAHPRVADR----------IPSVL-ENVCDQIRLWESDL 266
S+ AVE G+TA+Q +AHP++ P+VL V DQIRLW+ +
Sbjct: 363 SIRRAVEMGITADQIISYLTTHAHPQMRKYHASKSSHTVGAPAVLPPTVVDQIRLWQLER 422
Query: 267 NRVEMTPAHYYDEFPS 282
+R++ TP + +F S
Sbjct: 423 DRIKATPGFLFKDFVS 438
>gi|225682227|gb|EEH20511.1| RNA polymerase II transcription factor B subunit 2
[Paracoccidioides brasiliensis Pb03]
gi|226289599|gb|EEH45083.1| TFIIH basal transcription factor complex p52 subunit
[Paracoccidioides brasiliensis Pb18]
Length = 484
Score = 132 bits (332), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 92/316 (29%), Positives = 153/316 (48%), Gaps = 64/316 (20%)
Query: 24 ARLPTLEDLEAYAIGQWERFLLQLISSA--QAERSINFCSSTMKVFQRGLLIQRDKEAPR 81
A L T+ L+ YA QWE L ++ ++ A++++ ++ Q L++
Sbjct: 130 ANLMTVAQLDEYASRQWEGVLGYMVGTSVLGAQQTVTLSKGVKQLLQACHLVEVHDRRVD 189
Query: 82 LTESGFQFLLMDTNAQLWYIVREYISNSQHDSMLAYERGINQADLISFLLELSFHVAGEA 141
+T+ GF F+L D N Q+W I+ Y+ N++ + G+ +++SFL LS G++
Sbjct: 190 ITKEGFAFVLQDVNTQVWNILILYVENAE-------QIGLESVEVLSFLFVLSSLELGQS 242
Query: 142 YNLKTLSEIQRSMIKDFADLGLVKLQQGRKESW-FIPT----------------IADSL- 183
Y K L+ Q + D D G+V +E+ F PT I+ SL
Sbjct: 243 YEKKHLTSTQLKTLTDLTDFGIVYQHFPPQEATRFYPTRLVTTLTSDSATLGSSISTSLT 302
Query: 184 --------------------ETNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKE 223
ETN+R+YAY++S L ++ LF+ ++Y+ PNLI G IT++
Sbjct: 303 GPSGPAAANSSEPSTGFIVIETNYRLYAYTSSPLQISLIALFTTLKYRFPNLITGKITRQ 362
Query: 224 SLYNAVENGLTAEQ------QNAHPRVADR----------IPSVL-ENVCDQIRLWESDL 266
S+ AVE G+TA+Q +AHP++ P+VL V DQIRLW+ +
Sbjct: 363 SIRRAVEMGITADQIISYLTTHAHPQMRKYHASKSSHTVGAPAVLPPTVVDQIRLWQLER 422
Query: 267 NRVEMTPAHYYDEFPS 282
+R++ TP + +F S
Sbjct: 423 DRIKATPGFLFKDFVS 438
>gi|261187837|ref|XP_002620336.1| TFIIH and nucleotide excision repair factor 3 complexes subunit
[Ajellomyces dermatitidis SLH14081]
gi|239593453|gb|EEQ76034.1| TFIIH and nucleotide excision repair factor 3 complexes subunit
[Ajellomyces dermatitidis SLH14081]
gi|239608433|gb|EEQ85420.1| TFIIH and nucleotide excision repair factor 3 complexes subunit
[Ajellomyces dermatitidis ER-3]
gi|327356043|gb|EGE84900.1| RNA pol II transcription initiation subunit [Ajellomyces
dermatitidis ATCC 18188]
Length = 485
Score = 132 bits (332), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 91/314 (28%), Positives = 156/314 (49%), Gaps = 67/314 (21%)
Query: 28 TLEDLEAYAIGQWERFLLQLI--SSAQAERSINFCSSTMKVFQRGLLIQ-RDKEAPRLTE 84
T+ L+ YA QWE L ++ S+ ++++ ++ Q L++ RD+ +T+
Sbjct: 134 TVALLDDYARSQWEGVLGYMVGTSALGVQQAVTLSKGVKQLLQACHLVEIRDRRV-EITK 192
Query: 85 SGFQFLLMDTNAQLWYIVREYISNSQHDSMLAYERGINQADLISFLLELSFHVAGEAYNL 144
GF F+L D N Q+W+I+ Y+ N++ + G++ +++SFL LS G++Y
Sbjct: 193 DGFAFVLQDLNTQVWHILILYVENAE-------QIGMDSVEVLSFLFVLSSLELGQSYEK 245
Query: 145 KTLSEIQRSMIKDFADLGLVKLQQGRKESW-FIPT----------------IADSL---- 183
K L+ Q + D D G+V +E+ F PT I+ SL
Sbjct: 246 KHLTSTQLKTLADLTDFGIVYQHPPHQEATRFYPTRLATTLTSDSITLGSSISSSLTAPS 305
Query: 184 -----------------ETNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKESLY 226
ETN+R+YAY++S L ++ LF+ ++Y+ PNLI G +T++S+
Sbjct: 306 GGPAAVSNEPGTGFIIIETNYRLYAYTSSPLQISLISLFTTLKYRFPNLITGKLTRQSIR 365
Query: 227 NAVENGLTAEQ------QNAHPRV-----------ADRIPSVL-ENVCDQIRLWESDLNR 268
AVE G+TA+Q +AHP++ +P+VL V DQIRLW+ + +R
Sbjct: 366 RAVEMGITADQIISYLTTHAHPQMRKYHASKSGANPAGVPAVLPPTVVDQIRLWQLERDR 425
Query: 269 VEMTPAHYYDEFPS 282
++ TP + +F S
Sbjct: 426 IKATPGFLFKDFVS 439
>gi|403180193|ref|XP_003338499.2| hypothetical protein PGTG_19983 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
gi|375166015|gb|EFP94080.2| hypothetical protein PGTG_19983 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
Length = 679
Score = 132 bits (331), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 87/289 (30%), Positives = 145/289 (50%), Gaps = 60/289 (20%)
Query: 68 QRGLLIQRDK---EAPRLTESGFQFLLMDTNAQLWYIVREYISNSQHDSMLAYERGINQA 124
Q GL+ D ++ ++T GF FLL D N QLW I+ +Y+ ++ + G++
Sbjct: 20 QSGLMTSSDPRSLQSLKITSKGFGFLLEDVNTQLWDILLQYLKMTEAN-------GLDVV 72
Query: 125 DLISFLLELSFHVAGEAYNLKTLSEIQRSMIKDFADLGLVKLQQGRKESWFIPT-IADSL 183
D+++ L L G+ Y+ + Q +++D D GLV + + F PT +A +L
Sbjct: 73 DVLACLFMLGSLELGQEYSFSNWTPTQTQVLQDLVDYGLVLVSAPDR---FYPTRLATTL 129
Query: 184 ----------------------ETNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAIT 221
ETN+R+YAY+++ L +L LF + Y+ PNL+VGA+T
Sbjct: 130 TSTAPPLVSAERAQEEHGFLVLETNYRIYAYTSNPLQIAVLNLFLSLRYRFPNLVVGAVT 189
Query: 222 KESLYNAVENGLTAEQ------QNAHPRVADRIPSVLENVCDQIRLWESDLNRVEMTPAH 275
+ES+ +A+ NG+TA+Q +AHP++ P + V DQIRLWE + NR+ +
Sbjct: 190 RESIKSALSNGITADQVIMYLHTHAHPQMRKLEPLLPPTVVDQIRLWELEKNRIRAQEGY 249
Query: 276 YYDEFPSRED-------SKKM-----------RLVVNAEIHMHMREFLR 306
Y++F S + S+K+ +L V + H+ +REF R
Sbjct: 250 LYEDFKSAAEYDSVIQYSRKLGIVLWEHAGLRKLFVGYDGHLTLREFFR 298
>gi|240279262|gb|EER42767.1| TFIIH basal transcription factor complex p52 subunit [Ajellomyces
capsulatus H143]
Length = 485
Score = 132 bits (331), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 88/313 (28%), Positives = 153/313 (48%), Gaps = 65/313 (20%)
Query: 28 TLEDLEAYAIGQWERFLLQLI--SSAQAERSINFCSSTMKVFQRGLLIQRDKEAPRLTES 85
T+ L+ YA QWE L ++ S+ ++++ ++ Q L++ +T+
Sbjct: 134 TVAQLDHYARSQWEGVLGYMVGTSALGVQQAVTLSKGVKQLLQACHLVEVRDRRVEITKD 193
Query: 86 GFQFLLMDTNAQLWYIVREYISNSQHDSMLAYERGINQADLISFLLELSFHVAGEAYNLK 145
GF F+L D N Q+W+I+ Y+ N++ + G++ +++SFL LS G++Y K
Sbjct: 194 GFAFVLQDLNTQVWHILILYVENAE-------QIGMDSIEVLSFLFVLSSLELGQSYEKK 246
Query: 146 TLSEIQRSMIKDFADLGLVKLQQGRKESW-FIPT-IADSL-------------------- 183
L+ Q + D D G+V +E+ F PT +A +L
Sbjct: 247 HLTSTQLKTLADLTDFGIVYQHSPHQEATRFYPTRLATTLTSDSITLSSSISSSLTAPNL 306
Query: 184 ----------------ETNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKESLYN 227
ETN+R+YAY++S L ++ LF+ ++Y+ PNLI G +T++S+
Sbjct: 307 VPSASSNEPSTGFIIIETNYRLYAYTSSPLQISLIALFTSLKYRFPNLITGKLTRQSVRR 366
Query: 228 AVENGLTAEQ------QNAHPRVADR-----------IPSVL-ENVCDQIRLWESDLNRV 269
AVE G+TA+Q +AHP++ +P+VL V DQIRLW+ + +R+
Sbjct: 367 AVEMGITADQIISYLTTHAHPQMRKYHATKSGANPVGVPTVLPPTVVDQIRLWQLERDRI 426
Query: 270 EMTPAHYYDEFPS 282
+ TP + +F S
Sbjct: 427 KATPGFLFKDFVS 439
>gi|325089533|gb|EGC42843.1| TFIIH basal transcription factor complex p52 subunit [Ajellomyces
capsulatus H88]
Length = 485
Score = 132 bits (331), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 88/313 (28%), Positives = 153/313 (48%), Gaps = 65/313 (20%)
Query: 28 TLEDLEAYAIGQWERFLLQLI--SSAQAERSINFCSSTMKVFQRGLLIQRDKEAPRLTES 85
T+ L+ YA QWE L ++ S+ ++++ ++ Q L++ +T+
Sbjct: 134 TVAQLDHYARSQWEGVLGYMVGTSALGVQQAVTLSKGVKQLLQACHLVEVRDRRVEITKD 193
Query: 86 GFQFLLMDTNAQLWYIVREYISNSQHDSMLAYERGINQADLISFLLELSFHVAGEAYNLK 145
GF F+L D N Q+W+I+ Y+ N++ + G++ +++SFL LS G++Y K
Sbjct: 194 GFAFVLQDLNTQVWHILILYVENAE-------QIGMDSIEVLSFLFVLSSLELGQSYEKK 246
Query: 146 TLSEIQRSMIKDFADLGLVKLQQGRKESW-FIPT-IADSL-------------------- 183
L+ Q + D D G+V +E+ F PT +A +L
Sbjct: 247 HLTSTQLKTLADLTDFGIVYQHSPHQEATRFYPTRLATTLTSDSITLSSSISSSLTAPNL 306
Query: 184 ----------------ETNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKESLYN 227
ETN+R+YAY++S L ++ LF+ ++Y+ PNLI G +T++S+
Sbjct: 307 VPSASSNEPSTGFIIIETNYRLYAYTSSPLQISLIALFTSLKYRFPNLITGKLTRQSVRR 366
Query: 228 AVENGLTAEQ------QNAHPRVADR-----------IPSVL-ENVCDQIRLWESDLNRV 269
AVE G+TA+Q +AHP++ +P+VL V DQIRLW+ + +R+
Sbjct: 367 AVEMGITADQIISYLTTHAHPQMRKYHATKSGANPVGVPTVLPPTVVDQIRLWQLERDRI 426
Query: 270 EMTPAHYYDEFPS 282
+ TP + +F S
Sbjct: 427 KATPGFLFKDFVS 439
>gi|395533817|ref|XP_003768949.1| PREDICTED: LOW QUALITY PROTEIN: valine--tRNA ligase, mitochondrial
[Sarcophilus harrisii]
Length = 1638
Score = 132 bits (331), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 92/318 (28%), Positives = 156/318 (49%), Gaps = 72/318 (22%)
Query: 29 LEDLEAYAIGQWERFLLQLISSAQAERSINFCSSTMKVFQRGLLIQRDK-EAPRLTESGF 87
+ L+ YA +WE L ++ S A S + + Q GL+ + E P +T +GF
Sbjct: 179 VPSLDKYAEERWEVILHFMVGSPSAAVSQDL---AQLLSQAGLMKSSEPGEPPCITSAGF 235
Query: 88 QFLLMDTNAQLWYIVREYISNSQHDSMLAYERGINQADLISFLLELSFHVAGEAYNLKTL 147
QFLL+DT AQLWY + +Y+ +Q RG++ +++SFL +LSF G+ Y+++ +
Sbjct: 236 QFLLLDTPAQLWYFMLQYLQTAQ-------SRGMDLVEILSFLFQLSFSTLGKDYSVEGM 288
Query: 148 SEIQRSMIKDFADLGLVKLQQGRKESWFIPT-IADSL-------------------ETNF 187
S+ + ++ + GLV Q+ RK + PT +A +L ETN+
Sbjct: 289 SDSLLNFLQHLREFGLV-FQRKRKSRRYYPTRLAINLSSGVTGAGGTAHQPGFIVVETNY 347
Query: 188 RMYAYST----------------------------------SKLHCEILRLFSKIEYQLP 213
R+YAY+ S+L ++ LFS++ Y+ P
Sbjct: 348 RLYAYTGEVGGIKMRIEIRGGGIGGELNLLWSSIVFSLETESELQIALIALFSEMLYRFP 407
Query: 214 NLIVGAITKESLYNAVENGLTAEQ------QNAHPRVADRIPSVLENVCDQIRLWESDLN 267
N++V +T+ES+ A+ NG+TA+Q AHP + + P + + DQIRLWE + +
Sbjct: 408 NMVVAQVTRESVQQAIANGITAQQIIHFMKTRAHPVMLKQTPVLPPTITDQIRLWELERD 467
Query: 268 RVEMTPAHYYDEFPSRED 285
R+ + Y++F S+ D
Sbjct: 468 RLRFSEGVLYNQFLSQVD 485
>gi|195999048|ref|XP_002109392.1| hypothetical protein TRIADDRAFT_20428 [Trichoplax adhaerens]
gi|190587516|gb|EDV27558.1| hypothetical protein TRIADDRAFT_20428 [Trichoplax adhaerens]
Length = 452
Score = 131 bits (330), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 97/353 (27%), Positives = 170/353 (48%), Gaps = 62/353 (17%)
Query: 1 SNLWKHLINGGALPREPMPSGITARLPTLEDLEAYAIGQWERFLLQLISSAQAERSINFC 60
+NL L GG P S T E L+ + +WE L L+ + + +
Sbjct: 109 ANLKTALCGGGESWYGPQLSKADKYQFTSEALDLKSKERWECVLHYLVGAGE---DLALS 165
Query: 61 SSTMKVFQRGLLIQRDKEAPRLTESGFQFLLMDTNAQLWYIVREYISNSQHDSMLAYERG 120
+ L+ ++ +T +GFQFLL+D +Q+WYI+ +Y+ +++ G
Sbjct: 166 GEIQSLLNNCGLVSKNG----ITAAGFQFLLLDRPSQVWYILLQYLDSAE-------SLG 214
Query: 121 INQADLISFLLELSFHVAGEAYNLKTLSEIQRSMIKDFADLGLVKLQQGRKESWFIPT-I 179
++ +++SFL +LS+ G+ Y+ + L++ Q + ++ ++GLV +Q+ RK+ F PT +
Sbjct: 215 MDLVEILSFLFQLSYSTFGQNYSTEGLTQTQLTCLQHMREIGLV-VQRKRKDMKFYPTQL 273
Query: 180 ADSL--------------------ETNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVGA 219
A +L ETN+R+YAY+ S L ++ LF ++ Y+LP L VG
Sbjct: 274 AINLASGAKQEELDHSKSSGYIIVETNYRLYAYTESPLDIALVALFCEMMYRLPGLCVGL 333
Query: 220 ITKESLYNAVENGLTAEQ------QNAHPRVADRI--PSVLENVCDQIRLWESDLNRVEM 271
IT+ES+ A NG+TA + +AHP ++ P V + DQ+ LWE + R+
Sbjct: 334 ITRESVQQAFTNGITANKIINFIRTHAHPEAKKKVTTPIVPSTIIDQLYLWELERGRLSC 393
Query: 272 TPAHYYDEFPSREDSKKMR------------------LVVNAEIHMHMREFLR 306
+ Y++ S D + +R LVVN + H H++ F +
Sbjct: 394 SDGVLYNQILSSSDFEALRKYADDMGVLLWASPAKRLLVVNRDGHNHVKHFWK 446
>gi|391335225|ref|XP_003741996.1| PREDICTED: general transcription factor IIH subunit 4-like
[Metaseiulus occidentalis]
Length = 457
Score = 131 bits (329), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 87/290 (30%), Positives = 151/290 (52%), Gaps = 42/290 (14%)
Query: 32 LEAYAIGQWERFLLQLISSAQAERSINFCSSTMKVFQRGLLIQRDKEAPR----LTESGF 87
L+ YA +W+ L ++ S + E I+ +++ L++++ ++P +T GF
Sbjct: 138 LDQYAQERWDCVLHYMVGS-EVESGIS--QDAVRILLHSGLMKKEDDSPNSKNLITMEGF 194
Query: 88 QFLLMDTNAQLWYIVREYISNSQHDSMLAYERGINQADLISFLLELSFHVAGEAYNLKTL 147
QFLLMDT Q+WY + +Y+S + RG++ D + F+ +LSF G+ Y++K +
Sbjct: 195 QFLLMDTEDQVWYFILQYLSTVE-------TRGVSLVDCLQFIFQLSFLTLGKDYSIKGV 247
Query: 148 SEIQRSMIKDFADLGLVKLQQGRKESWFIPT-----IADSL---------------ETNF 187
SE ++ + GLV Q+ RK F PT +A L ETN+
Sbjct: 248 SENLLVFLQHLREFGLV-YQRKRKSGRFYPTRLAIGLASGLKELQATKDEQGYIIVETNY 306
Query: 188 RMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKESLYNAVENGLTAEQ------QNAH 241
R+YAY+ S L +L LF ++ Y+ PNL+V +T+ES+ A++ G+T+ Q +H
Sbjct: 307 RVYAYTDSPLQVALLSLFCELLYRFPNLLVAVLTRESVRQALKGGITSNQITHFLKSRSH 366
Query: 242 PRVADRIPSVLE-NVCDQIRLWESDLNRVEMTPAHYYDEFPSREDSKKMR 290
V +R ++ V DQ+RLWE + +R + + Y +F + D + +R
Sbjct: 367 RVVLEREEGIIPMTVTDQLRLWELERDRFKFGESVLYSQFQTTGDFEMLR 416
>gi|388581217|gb|EIM21527.1| transcription factor Tfb2 [Wallemia sebi CBS 633.66]
Length = 449
Score = 131 bits (329), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 103/347 (29%), Positives = 158/347 (45%), Gaps = 74/347 (21%)
Query: 16 EPMPSGITARLPTLEDLEAYAIGQWERFLLQLISSAQAERSINFCSSTMKVFQRGLLIQR 75
E + + IT T+E L+ +A QWE L ++ S + S + + ++ LI
Sbjct: 102 ESLSNSITT---TIEQLDTFATQQWELILHYMVGSYNSTPS----KGVLFLLEKSNLIYT 154
Query: 76 DKEAPRLTESGFQFLLMDTNAQLWYIVREYISNSQHDSMLAYERGINQADLI---SFLLE 132
+ R++ GFQFLL D QLW Q I Q DL+ SFL
Sbjct: 155 ANKQHRISSKGFQFLLEDVQVQLW----------QLLLEYLSLSEIRQMDLVEVLSFLFV 204
Query: 133 LSFHVAGEAYNLKTLSEIQRSMIKDFADLGLVKLQQGRKESWFIPT-IADSL-------- 183
L G+ Y++++L+ Q++M+ D D GLV Q+ F PT +A +L
Sbjct: 205 LGTLELGKDYSIESLTNTQQAMLSDLRDYGLV-WQRKTSSKRFYPTRLATTLTSSAPPLL 263
Query: 184 --------------------ETNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKE 223
ETN+R+YAY+++ L IL LF ++ + PNL++G IT++
Sbjct: 264 PTTESSSFTTSSDNKRFIILETNYRLYAYTSNPLQISILNLFVTLKARYPNLVIGVITRD 323
Query: 224 SLYNAVENGLTAEQ------QNAHPRVADRIPSVLENVCDQIRLWESDLNRVEMTPAHYY 277
S+ +A+ NG+TAEQ +AH ++ P + V DQIRLWE + NR++ Y
Sbjct: 324 SIRSALSNGITAEQIIGYLTSHAHTQMHRNNPLLPVTVSDQIRLWELEKNRLKADDGVLY 383
Query: 278 DEFPSREDSK------------------KMRLVVNAEIHMHMREFLR 306
EF S+ D + K V E H +REF+R
Sbjct: 384 AEFRSQPDYEILLNYAKSYDCVLWSNDIKRMFFVTLEGHQIVREFVR 430
>gi|225555033|gb|EEH03326.1| RNA pol II transcription initiation subunit [Ajellomyces capsulatus
G186AR]
Length = 485
Score = 130 bits (328), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 88/311 (28%), Positives = 151/311 (48%), Gaps = 65/311 (20%)
Query: 28 TLEDLEAYAIGQWERFLLQLI--SSAQAERSINFCSSTMKVFQRGLLIQRDKEAPRLTES 85
T+ L+ YA QWE L ++ S+ +++ ++ Q L++ +T+
Sbjct: 134 TVAQLDHYARSQWEGVLGYMVGTSALGVQQAATLSKGVKQLLQACHLVEVRDRRVEITKD 193
Query: 86 GFQFLLMDTNAQLWYIVREYISNSQHDSMLAYERGINQADLISFLLELSFHVAGEAYNLK 145
GF F+L D N Q+W+I+ Y+ N++ + G++ +++SFL LS G++Y K
Sbjct: 194 GFAFVLQDLNTQVWHILILYVENAE-------QIGMDSIEVLSFLFVLSSLELGQSYEKK 246
Query: 146 TLSEIQRSMIKDFADLGLVKLQQGRKESW-FIPT----------------IADSL----- 183
L+ Q + D D G+V +E+ F PT I+ SL
Sbjct: 247 HLTSTQLKTLADLTDFGIVYQHSPHQEATRFYPTRLATTLTSDSITLGSSISSSLTAPNG 306
Query: 184 ----------------ETNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKESLYN 227
ETN+R+YAY++S L ++ LF+ ++Y+ PNLI G +T++S+
Sbjct: 307 VPSASSNEPSTGFIIIETNYRLYAYTSSPLQISLIALFTSLKYRFPNLITGKLTRQSVRR 366
Query: 228 AVENGLTAEQ------QNAHPRVAD-----------RIPSVL-ENVCDQIRLWESDLNRV 269
AVE G+TA+Q +AHP++ +P+VL V DQIRLW+ + +R+
Sbjct: 367 AVEMGITADQIISYLTTHAHPQMRKYHATKAGANPVGVPTVLPPTVVDQIRLWQLERDRI 426
Query: 270 EMTPAHYYDEF 280
+ TP + +F
Sbjct: 427 KATPGFLFKDF 437
>gi|62088538|dbj|BAD92716.1| VARS2L protein variant [Homo sapiens]
Length = 1653
Score = 130 bits (328), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 100/364 (27%), Positives = 168/364 (46%), Gaps = 94/364 (25%)
Query: 29 LEDLEAYAIGQWERFLLQLISSAQAERSINFCSSTMKVFQRGLLIQRDK-EAPRLTESGF 87
+ L+ YA +WE L ++ S A S + + Q GL+ + E P +T +GF
Sbjct: 192 VPSLDKYAEERWEVVLHFMVGSPSAAVSQDL---AQLLSQAGLMKSTEPGEPPCITSAGF 248
Query: 88 QFLLMDTNAQLWYIVREYISNSQHDSMLAYERGINQADLISFLLELSFHVAGEAYNLKTL 147
QFLL+DT AQLWY + +Y+ +Q RG++ +++SFL +LSF G+ Y+++ +
Sbjct: 249 QFLLLDTPAQLWYFMLQYLQTAQ-------SRGMDLVEILSFLFQLSFSTLGKDYSVEGM 301
Query: 148 SEIQRSMIKDFADLGLVKLQQGRKESWFIPT-IADSL-------------------ETNF 187
S+ + ++ + GLV Q+ RK + PT +A +L ETN+
Sbjct: 302 SDSLLNFLQHLREFGLV-FQRKRKSRRYYPTRLAINLSSGVSGAGGTVHQPGFIVVETNY 360
Query: 188 RMYAY--------------------------------------STSKLHCEILRLFSKIE 209
R+YAY S S+L ++ LFS++
Sbjct: 361 RLYAYTGEAGQRAPGRGGWGHLKEGLEGVWVWGWPPLPLSIPGSESELQIALIALFSEML 420
Query: 210 YQLPNLIVGAITKESLYNAVENGLTAEQ------QNAHPRVADRIPSVLENVCDQIRLWE 263
Y+ PN++V +T+ES+ A+ +G+TA+Q AHP + + P + + DQIRLWE
Sbjct: 421 YRFPNMVVAQVTRESVQQAIASGITAQQIIHFLRTRAHPVMLKQTPVLPPTITDQIRLWE 480
Query: 264 SDLNRVEMTPAHYYDEFPSR------------------EDSKKMRLVVNAEIHMHMREFL 305
+ +R+ T Y++F S+ E+S K +VV H ++ F
Sbjct: 481 LERDRLRFTEGVLYNQFLSQVDFELLLAHARELGVLVFENSAKRLMVVTPAGHSDVKRFW 540
Query: 306 RGQN 309
+ Q
Sbjct: 541 KRQK 544
>gi|403308524|ref|XP_003944708.1| PREDICTED: LOW QUALITY PROTEIN: valine--tRNA ligase, mitochondrial
[Saimiri boliviensis boliviensis]
Length = 1752
Score = 130 bits (328), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 100/364 (27%), Positives = 168/364 (46%), Gaps = 94/364 (25%)
Query: 29 LEDLEAYAIGQWERFLLQLISSAQAERSINFCSSTMKVFQRGLLIQRDK-EAPRLTESGF 87
+ L+ YA +WE L ++ S A S + + Q GL+ + E P +T +GF
Sbjct: 290 VPSLDKYAEERWEVVLHFMVGSPSAAVSQDL---AQLLSQAGLMKSTEPGEPPCITSAGF 346
Query: 88 QFLLMDTNAQLWYIVREYISNSQHDSMLAYERGINQADLISFLLELSFHVAGEAYNLKTL 147
QFLL+DT AQLWY + +Y+ +Q RG++ +++SFL +LSF G+ Y+++ +
Sbjct: 347 QFLLLDTPAQLWYFMLQYLQTAQ-------SRGMDLVEILSFLFQLSFSTLGKDYSVEGM 399
Query: 148 SEIQRSMIKDFADLGLVKLQQGRKESWFIPT-IADSL-------------------ETNF 187
S+ + ++ + GLV Q+ RK + PT +A +L ETN+
Sbjct: 400 SDSLLNFLQHLREFGLV-FQRKRKSRRYYPTRLAINLSSGVSGAGGTVHQPGFIVVETNY 458
Query: 188 RMYAY--------------------------------------STSKLHCEILRLFSKIE 209
R+YAY S S+L ++ LFS++
Sbjct: 459 RLYAYTGEVGQRAPGRAGWGRGNARLEGVWVWGWPPHPLSIPGSESELQIALIALFSEML 518
Query: 210 YQLPNLIVGAITKESLYNAVENGLTAEQ------QNAHPRVADRIPSVLENVCDQIRLWE 263
Y+ PN++V +T+ES+ A+ +G+TA+Q AHP + + P + + DQIRLWE
Sbjct: 519 YRFPNMVVAQVTRESVQQAIASGITAQQIIHFLRTRAHPVMLKQTPVLPPTITDQIRLWE 578
Query: 264 SDLNRVEMTPAHYYDEFPSR------------------EDSKKMRLVVNAEIHMHMREFL 305
+ +R+ T Y++F S+ E+S K +VV H ++ F
Sbjct: 579 LERDRLRFTEGVLYNQFLSQVDFELLLAHARELGVLVFENSAKRLMVVTPAGHSDVKRFW 638
Query: 306 RGQN 309
+ Q
Sbjct: 639 KRQK 642
>gi|342319113|gb|EGU11064.1| RNA polymerase II transcription factor B subunit 2 [Rhodotorula
glutinis ATCC 204091]
Length = 496
Score = 130 bits (328), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 102/354 (28%), Positives = 157/354 (44%), Gaps = 68/354 (19%)
Query: 7 LINGGALPREPMPSGITARLPTLEDLEAYAIGQWERFLLQLISSAQAERSINFCSSTMKV 66
L GG P+ T++ L+ +A QWE ++ S + + +
Sbjct: 138 LTGGGKQGSFGAPAAEQDEEVTVQFLDDHAEVQWETIQHFMVGSDAGAKKPG--EKVLSL 195
Query: 67 FQRGLLI---QRDKEAPRLTESGFQFLLMDTNAQLWYIVREYISNSQHDSMLAYERGINQ 123
+R L+ R R+T GFQFLL D N QLW ++ Y+ SQ +
Sbjct: 196 LERSGLMYSPTRSLRNMRITSKGFQFLLEDVNTQLWDLLLVYLEGSQ-----------DL 244
Query: 124 ADLISFLLELSFHVAGEAYNLKTLSEIQRSMIKDFADLGLVKLQQGRKESWFIPT-IADS 182
+ I FL L G AY LS+IQ +++D AD GLV L + R F PT +A +
Sbjct: 245 VETIGFLFMLGSLELGRAYMTDNLSQIQHGVLRDLADYGLVYLPE-RNAPIFYPTRLATT 303
Query: 183 L----------------------ETNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAI 220
L ETN+++YAY+++ L +L LF+ ++ + N + G I
Sbjct: 304 LTSSAPPLVSSRHSNEEKGFIVLETNYKLYAYTSNPLQIAVLGLFAHLKTRFANFVTGHI 363
Query: 221 TKESLYNAVENGLTAEQ------QNAHPRVADRIPS----VLENVCDQIRLWESDLNRVE 270
T+ES+ + NG+TA Q AHP++ + S + V DQIRLWE + R++
Sbjct: 364 TRESIRRGLANGITANQIISYLASRAHPQMRAQAGSDDKLLPITVVDQIRLWEHERRRIQ 423
Query: 271 MTPAHYYDEFPSRED------------------SKKMRLVVNAEIHMHMREFLR 306
T + YDEF S D K ++ V A+ H +REF++
Sbjct: 424 TTEGYLYDEFSSTHDYELVVNYAREIGSVLLELPKARKVFVTADGHQQVREFIK 477
>gi|347830304|emb|CCD46001.1| similar to RNA polymerase II transcription factor B subunit 2
[Botryotinia fuckeliana]
Length = 471
Score = 130 bits (328), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 80/302 (26%), Positives = 149/302 (49%), Gaps = 53/302 (17%)
Query: 29 LEDLEAYAIGQWE---RFLLQLISSAQAERSINFCSSTMKVFQRGLLIQRDKEAPRLTES 85
++ L+ +A QWE +++ ++S + +S + G L+ R + +T++
Sbjct: 136 IDFLDTHARMQWEGILHYMVNTVTSGSGKDGNGPANSVKALLDAGKLVTRGR-GIGITQA 194
Query: 86 GFQFLLMDTNAQLWYIVREYISNSQHDSMLAYERGINQADLISFLLELSFHVAGEAYNLK 145
GF FLL + NAQ+W ++ +I N++ G++ D++SFL L G AY+ K
Sbjct: 195 GFSFLLQEANAQVWTLLLLWIENAE-------SMGMDSVDVLSFLFMLGSLELGRAYSTK 247
Query: 146 TLSEIQRSMIKDFADLGLVKLQQGRKESWFIPTIADSL---------------------- 183
TL+E Q+ M+ + DLGL+ L +F +A +L
Sbjct: 248 TLTEAQKGMLANLIDLGLIYLPPSAPTQFFPTRLATTLTSDASALRTVAAGFDAASKSAA 307
Query: 184 --------ETNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKESLYNAVENGLTA 235
ETN+R+YAY+ S L +L LF+K+ + PN++ G ++++S+ A+ +G+T+
Sbjct: 308 SQKGFIIIETNYRLYAYTNSPLQIAVLSLFTKLNTRYPNMVSGRVSRDSIRTAIAHGITS 367
Query: 236 EQ------QNAHPRVADRI------PSVLENVCDQIRLWESDLNRVEMTPAHYYDEFPSR 283
+Q +AHP++ P + V DQIRLW+ + R++ P +F ++
Sbjct: 368 DQIITYLSTHAHPQLVKASSASHGGPVLPPTVVDQIRLWQLENERMKAVPGFLMKDFETQ 427
Query: 284 ED 285
++
Sbjct: 428 KE 429
>gi|298705308|emb|CBJ48998.1| conserved unknown protein [Ectocarpus siliculosus]
Length = 534
Score = 130 bits (327), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 92/321 (28%), Positives = 150/321 (46%), Gaps = 57/321 (17%)
Query: 27 PTLEDLEAYAIGQWERFLLQLISSAQAERSINFCSSTMKVFQRGLLIQ-RDKEAPRLTES 85
PT+ +E QW+ L L+ S + RS + + GL+ R + A R+T+
Sbjct: 158 PTVAKIERQMHSQWQDVLYFLVGSDEEGRSTPPARVVKFMEESGLMRPVRGRGALRITDK 217
Query: 86 GFQFLLMDTNAQLWYIVREYISNSQHDSMLAYERGINQADLISFLLELSFHVAGEAYNLK 145
G++F+L + + Q W +V I+ + +L++FL +LS+ G+AY L
Sbjct: 218 GYEFMLKEAHVQAWMVVHALINGYGRTQPGCRD------ELLAFLFQLSYCKVGDAYPLG 271
Query: 146 TLSEIQRSMIKDFADLGLVKLQQGRKESWFIPTIADSL---------------------- 183
L++ QR + +DF +LGL+ ++ + ++ +IA +L
Sbjct: 272 ALTQTQRDLAQDFVELGLLFKRKAKSTRFYPTSIAVNLIFGSSPSGDAGGAGGGGTQRKP 331
Query: 184 ---------------------ETNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITK 222
ETNF++ AY+ SKLH +L LF ++ LPN IVGAIT+
Sbjct: 332 QPAGGLGGGKREDDTSIHIIVETNFQVIAYTRSKLHFAMLSLFLELRALLPNAIVGAITR 391
Query: 223 ESLYNAVENGLTAEQQ------NAHPRVADRIPSVLENVCDQIRLWESDLNRVEMTPAHY 276
ES+ A+ G+ Q +AHP V R P V EN+ DQ+ LWE + +R+E
Sbjct: 392 ESMRKALSTGIKGRQVLDFLKWHAHPVVRRRTPVVPENIADQVLLWERERDRMEHRDGVL 451
Query: 277 YD-EFPSREDSKKMRLVVNAE 296
D + SR+ + M NA+
Sbjct: 452 VDVSYASRDAFRGMTEFANAK 472
>gi|156057729|ref|XP_001594788.1| hypothetical protein SS1G_04596 [Sclerotinia sclerotiorum 1980]
gi|154702381|gb|EDO02120.1| hypothetical protein SS1G_04596 [Sclerotinia sclerotiorum 1980
UF-70]
Length = 420
Score = 130 bits (327), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 81/299 (27%), Positives = 148/299 (49%), Gaps = 53/299 (17%)
Query: 32 LEAYAIGQWE---RFLLQLISSAQAERSINFCSSTMKVFQRGLLIQRDKEAPRLTESGFQ 88
L+ +A QWE +++ +++ + S K+ G L+ R + +T++GF
Sbjct: 88 LDVHARMQWEGILHYMVNNVAAGSGQEGSGPAGSVKKLLDAGKLVTRGRSV-GITQAGFS 146
Query: 89 FLLMDTNAQLWYIVREYISNSQHDSMLAYERGINQADLISFLLELSFHVAGEAYNLKTLS 148
FLL + NAQ+W ++ +I N++ SM G++ D++SFL L G AY+ TL+
Sbjct: 147 FLLQEANAQVWTLLLLWIENAE--SM-----GMDSVDVLSFLFMLGSLELGRAYSTTTLT 199
Query: 149 EIQRSMIKDFADLGLVKLQQGRKESWFIPTIADSL------------------------- 183
+ Q +M+ + D GL+ L +F +A +L
Sbjct: 200 DAQHNMLGNLIDFGLIYLPPSAPTQFFPTRLATTLTSDASALRTVSAGFDAASKSAANQK 259
Query: 184 -----ETNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKESLYNAVENGLTAEQ- 237
ETN+R+YAY+ S L +L LF+K+ + PN++ G ++++S+ A+ +G+T++Q
Sbjct: 260 GFIIIETNYRLYAYTNSPLQIAVLSLFTKLNTRYPNMVSGRVSRDSIRTAISHGITSDQI 319
Query: 238 -----QNAHPRV------ADRIPSVLENVCDQIRLWESDLNRVEMTPAHYYDEFPSRED 285
+AHP++ A P + V DQIRLW+ + R++ P + EF +++
Sbjct: 320 ITYLSTHAHPQLVKASTAAHGGPVLPPTVVDQIRLWQLENERMKAVPGFLFKEFDGQKE 378
>gi|154308354|ref|XP_001553513.1| hypothetical protein BC1G_08237 [Botryotinia fuckeliana B05.10]
Length = 410
Score = 130 bits (327), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 80/299 (26%), Positives = 147/299 (49%), Gaps = 53/299 (17%)
Query: 32 LEAYAIGQWE---RFLLQLISSAQAERSINFCSSTMKVFQRGLLIQRDKEAPRLTESGFQ 88
L+ +A QWE +++ ++S + +S + G L+ R + +T++GF
Sbjct: 78 LDTHARMQWEGILHYMVNTVTSGSGKDGNGPANSVKALLDAGKLVTRGR-GIGITQAGFS 136
Query: 89 FLLMDTNAQLWYIVREYISNSQHDSMLAYERGINQADLISFLLELSFHVAGEAYNLKTLS 148
FLL + NAQ+W ++ +I N++ G++ D++SFL L G AY+ KTL+
Sbjct: 137 FLLQEANAQVWTLLLLWIENAE-------SMGMDSVDVLSFLFMLGSLELGRAYSTKTLT 189
Query: 149 EIQRSMIKDFADLGLVKLQQGRKESWFIPTIADSL------------------------- 183
E Q+ M+ + DLGL+ L +F +A +L
Sbjct: 190 EAQKGMLANLIDLGLIYLPPSAPTQFFPTRLATTLTSDASALRTVAAGFDAASKSAASQK 249
Query: 184 -----ETNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKESLYNAVENGLTAEQ- 237
ETN+R+YAY+ S L +L LF+K+ + PN++ G ++++S+ A+ +G+T++Q
Sbjct: 250 GFIIIETNYRLYAYTNSPLQIAVLSLFTKLNTRYPNMVSGRVSRDSIRTAIAHGITSDQI 309
Query: 238 -----QNAHPRVADRI------PSVLENVCDQIRLWESDLNRVEMTPAHYYDEFPSRED 285
+AHP++ P + V DQIRLW+ + R++ P +F ++++
Sbjct: 310 ITYLSTHAHPQLVKASSASHGGPVLPPTVVDQIRLWQLENERMKAVPGFLMKDFETQKE 368
>gi|390461382|ref|XP_002746360.2| PREDICTED: LOW QUALITY PROTEIN: valine--tRNA ligase, mitochondrial
[Callithrix jacchus]
Length = 1675
Score = 130 bits (327), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 100/365 (27%), Positives = 168/365 (46%), Gaps = 95/365 (26%)
Query: 29 LEDLEAYAIGQWERFLLQLISSAQAERSINFCSSTMKVFQRGLLIQRDK-EAPRLTESGF 87
+ L+ YA +WE L ++ S A S + + Q GL+ + E P +T +GF
Sbjct: 212 VPSLDKYAEERWEVVLHFMVGSPSAAVSQDL---AQLLSQAGLMKSAEPGEPPCITSAGF 268
Query: 88 QFLLMDTNAQLWYIVREYISNSQHDSMLAYERGINQADLISFLLELSFHVAGEAYNLKTL 147
QFLL+DT AQLWY + +Y+ +Q RG++ +++SFL +LSF G+ Y+++ +
Sbjct: 269 QFLLLDTPAQLWYFMLQYLQTAQ-------SRGMDLVEILSFLFQLSFSTLGKDYSVEGM 321
Query: 148 SEIQRSMIKDFADLGLVKLQQGRKESWFIPT-IADSL-------------------ETNF 187
S+ + ++ + GLV Q+ RK + PT +A +L ETN+
Sbjct: 322 SDSLLNFLQHLREFGLV-FQRKRKSRRYYPTRLAINLSSGVSGAGGTVHQPGFIVVETNY 380
Query: 188 RMYAY---------------------------------------STSKLHCEILRLFSKI 208
R+YAY S S+L ++ LFS++
Sbjct: 381 RLYAYTGEAGQRAPGRAGWGXHLKERFEGVWVWGWPPHPLSIPGSESELQIALIALFSEM 440
Query: 209 EYQLPNLIVGAITKESLYNAVENGLTAEQ------QNAHPRVADRIPSVLENVCDQIRLW 262
Y+ PN++V +T+ES+ A+ +G+TA+Q AHP + + P + + DQIRLW
Sbjct: 441 LYRFPNMVVAQVTRESVQQAIASGITAQQIIHFLRTRAHPVMLKQTPVLPPTITDQIRLW 500
Query: 263 ESDLNRVEMTPAHYYDEFPSR------------------EDSKKMRLVVNAEIHMHMREF 304
E + +R+ T Y++F S+ E+S K +VV H ++ F
Sbjct: 501 ELERDRLRFTEGVLYNQFLSQVDFELLLAHARELGVLVFENSAKRLMVVTPAGHSDVKRF 560
Query: 305 LRGQN 309
+ Q
Sbjct: 561 WKRQK 565
>gi|296422658|ref|XP_002840876.1| hypothetical protein [Tuber melanosporum Mel28]
gi|295637102|emb|CAZ85067.1| unnamed protein product [Tuber melanosporum]
Length = 460
Score = 130 bits (326), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 82/297 (27%), Positives = 149/297 (50%), Gaps = 49/297 (16%)
Query: 28 TLEDLEAYAIGQWERFLLQLISSAQAERSINFCSSTMKVFQRGLLIQR--DKEAPRLTES 85
T++ L+ YA Q+E L ++ + + + + +G L++R + +T++
Sbjct: 124 TVQFLDDYATRQFEAILHYMVGT---HNEVKPSKGVITLLTKGGLMERYGAGSSATITKN 180
Query: 86 GFQFLLMDTNAQLWYIVREYISNSQHDSMLAYERGINQADLISFLLELSFHVAGEAYNLK 145
GF FLL D N Q+W ++ +Y+ S+ E G+ Q D++ FLL L G+AY++
Sbjct: 181 GFSFLLQDGNPQIWALLIQYLEMSE-------ELGMEQTDVLHFLLMLGSLELGQAYSVN 233
Query: 146 TLSEIQRSMIKDFADLGLVKLQQGRKESWFIPTIADSL---------------------- 183
TL+E Q+ M+ D D G+V ++ + ++ +A +L
Sbjct: 234 TLTETQKLMLADLRDYGIVYQRKSSSDRFYPTRLATTLTSESGGLRSASASMSSAMAKDA 293
Query: 184 ---------ETNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKESLYNAVENGLT 234
ETN+R+YAY+ S L +L LF K+ + PNL+ G I++ S+ A++ G+T
Sbjct: 294 EEGKGFIILETNYRVYAYTDSPLQIAVLNLFVKLSTRYPNLVSGRISRRSIQEAIKMGIT 353
Query: 235 AEQ------QNAHPRVADRIPSVLENVCDQIRLWESDLNRVEMTPAHYYDEFPSRED 285
A+Q +AHP++ + ++ V DQIRLW+ + R+ T + +F S ++
Sbjct: 354 ADQVIDYLSAHAHPQMRKSLVTLPPTVVDQIRLWQIEGERMRTTTGFLFKDFHSTQE 410
>gi|358370616|dbj|GAA87227.1| TFIIH and nucleotide excision repair factor 3 complexes subunit
[Aspergillus kawachii IFO 4308]
Length = 478
Score = 129 bits (324), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 94/322 (29%), Positives = 155/322 (48%), Gaps = 69/322 (21%)
Query: 21 GITARLP-----TLEDLEAYAIGQWERFLLQLISSA-QAERSINFCSSTMKVFQRGLLIQ 74
G+ + +P ++ DL+ YA QWE L ++ + + ++ Q G L++
Sbjct: 123 GVLSHVPAGSEVSISDLDEYARRQWEGVLGYMVGTGGMGAPQVTLSKGVKELLQAGHLVE 182
Query: 75 -RDKEAPRLTESGFQFLLMDTNAQLWYIVREYISNSQHDSMLAYERGINQADLISFLLEL 133
RD+ +T+ GF F+L D + Q+W+I+ Y+ ++ M + +++SF+ L
Sbjct: 183 IRDRRV-EITQDGFAFVLQDVSTQVWHILILYVESASAIKM-------DSVEVLSFVFLL 234
Query: 134 SFHVAGEAYNLKTLSEIQRSMIKDFADLGLVKLQQGRKESWFIPT------IADS----- 182
S G++Y LS Q M+ D AD G+V Q+ F PT +DS
Sbjct: 235 SSLELGKSYEKNHLSSKQLRMLTDLADFGIV-YQESPDAPRFYPTRLATTLTSDSSALSN 293
Query: 183 -----------------------LETNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVGA 219
+ETN+R+YAY++S L ++ LF+ ++Y+ PNLI G
Sbjct: 294 PLLGSLSGPAGEASSKAGTGFIIIETNYRVYAYTSSPLQISLIALFTTLKYRFPNLITGK 353
Query: 220 ITKESLYNAVENGLTAEQ------QNAHPRV------------ADRIPSVL-ENVCDQIR 260
IT++S+ AVE G+TA+Q +AHP++ A PSVL V DQIR
Sbjct: 354 ITRQSVRRAVEMGITADQIISYLSTHAHPQMRKHNVSRSTSNQAGIPPSVLPPTVVDQIR 413
Query: 261 LWESDLNRVEMTPAHYYDEFPS 282
LW+ + +RV+ T + +F S
Sbjct: 414 LWQLERDRVKATSGFLFKDFVS 435
>gi|328863850|gb|EGG12949.1| hypothetical protein MELLADRAFT_46475 [Melampsora larici-populina
98AG31]
Length = 454
Score = 129 bits (323), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 98/347 (28%), Positives = 165/347 (47%), Gaps = 60/347 (17%)
Query: 7 LINGGALPREPMPSGITARLPTLEDLEAYAIGQWERFLLQLISSAQAERSINFCSSTMKV 66
L GG +P ++++ L L+ YA WE L ++ S + R S + +
Sbjct: 113 LTGGGDHKSFGLPCKTSSKVDLLT-LDQYAKQNWETILHFMVGSNWSNRP---SSKIITL 168
Query: 67 FQRGLLIQRDKEAPRLTESGFQFLLMDTNAQLWYIVREYISNSQHDSMLAYERGINQADL 126
LI + ++T GFQFLL D N QLW ++ +Y+ +A ++ D+
Sbjct: 169 LTFSGLIS--SQNSKITSVGFQFLLDDINTQLWELLLQYLK-------MAEANDLDIVDV 219
Query: 127 ISFLLELSFHVAGEAYNLKTLSEIQRSMIKDFADLGLVKLQQGRK--ESWFIPTIADS-- 182
+S L L G+ Y++K S+ Q ++ D D GLV L Q + + + T+ +
Sbjct: 220 LSCLFMLGSLELGKEYSMKNFSDTQVQVLNDLVDYGLVYLTQSKTFYPTRLVTTLTSTAP 279
Query: 183 -------------------LETNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKE 223
LETN+R+YAY+++ L IL LF + + PNL++G+IT+E
Sbjct: 280 PIVSNPSDQSSSDPNEFLILETNYRIYAYTSNPLQIAILNLFISFKSRFPNLVIGSITRE 339
Query: 224 SLYNAVENGLTAEQQ------NAHPRVADRIPSVLENVCDQIRLWESDLNRVEMTPAHYY 277
S+ A +NG+ A+Q ++H ++ P + V DQIRLWE + NRV + Y
Sbjct: 340 SIKMAFKNGIRADQIISYLEFHSHSQMKLLKPILPNTVVDQIRLWELEKNRVRDQEGYLY 399
Query: 278 DEFPSRED-------SKKMRLVV--NAEI---------HMHMREFLR 306
++F S D SK++ +++ N E+ H +REF++
Sbjct: 400 EDFKSVSDYEIVINYSKQIDIILWENPELKKFFVSLDGHTALREFIK 446
>gi|195590491|ref|XP_002084979.1| GD12553 [Drosophila simulans]
gi|194196988|gb|EDX10564.1| GD12553 [Drosophila simulans]
Length = 500
Score = 128 bits (322), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 93/311 (29%), Positives = 152/311 (48%), Gaps = 52/311 (16%)
Query: 32 LEAYAIGQWERFLLQLISSAQ--AERSINFCSSTMKVFQRGLLIQRD-KEAPRLTESGFQ 88
L+ YA+ +W L ++ + + +++ L++RD ++ +T GFQ
Sbjct: 166 LDTYAMSRWRCVLHYMVGTGNRSGTDAEAISPDAVRILLHANLMKRDERDGITITRQGFQ 225
Query: 89 FLLMDTNAQLWYIVREYISNSQHDSMLAYERGINQADLISFLLELS-FHVAGEAYNLKTL 147
FLL+DT AQ+W+ + +Y+ + ERGI+ + +S L +L+ F G Y+ + +
Sbjct: 226 FLLLDTRAQVWHFMLQYLDTCE-------ERGISLPECLSMLFQLTQFSTLGRDYSSEGM 278
Query: 148 SEIQRSMIKDFADLGLVKLQQGRKESWFIPT-----------------------IADS-- 182
+ + ++ + GLV Q+ RKE F PT D
Sbjct: 279 NNQMLTFLQHLREFGLV-FQRKRKEGRFYPTRLALNVTSKEAAATASVAMDEEATQDCGY 337
Query: 183 --LETNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKESLYNAVENGLTAEQ--- 237
+ETN+R+YAY+ S L +L LF+++ Y+ PNL+VG +T++S+ A+ G+TAEQ
Sbjct: 338 IVVETNYRVYAYTDSPLQVAVLGLFTELLYRFPNLVVGVLTRDSVRQALRGGITAEQIVS 397
Query: 238 ---QNAHPRV-----ADRIPSVL-ENVCDQIRLWESDLNRVEMTPAHYYDEFPSREDSKK 288
Q AHP + A S L V DQI+LWE + NR T Y++F S D
Sbjct: 398 YLEQYAHPNMRMVESAIHSKSCLPPTVVDQIKLWELERNRFTYTEGVLYNQFLSHTDFVT 457
Query: 289 MRLVVNAEIHM 299
+R + IHM
Sbjct: 458 LRDYAQS-IHM 467
>gi|301786953|ref|XP_002928911.1| PREDICTED: LOW QUALITY PROTEIN: valyl-tRNA synthetase,
mitochondrial-like [Ailuropoda melanoleuca]
Length = 1637
Score = 128 bits (322), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 99/368 (26%), Positives = 168/368 (45%), Gaps = 98/368 (26%)
Query: 29 LEDLEAYAIGQWERFLLQLISSAQAERSINFCSSTMKVFQRGLLIQRDK-EAPRLTESGF 87
+ L+ YA +WE L ++ S A S + + Q GL+ + E P +T +GF
Sbjct: 169 VPSLDKYAEERWEVVLHFMVGSPSAAVSQDL---AQLLSQAGLMKSAEPGEPPCITSAGF 225
Query: 88 QFLLMDTNAQLWYIVREYISNSQHDSMLAYERGINQADLISFLLELSFHVAGEAYNLKTL 147
QFLL+DT AQLWY + +Y+ +Q RG++ +++SFL +LSF G+ Y+++ +
Sbjct: 226 QFLLLDTPAQLWYFMLQYLQTAQ-------SRGMDLVEILSFLFQLSFSTLGKDYSVEGM 278
Query: 148 SEIQRSMIKDFADLGLVKLQQGRKESWFIPT-IADSL-------------------ETNF 187
S+ + ++ + GLV Q+ RK + PT +A +L ETN+
Sbjct: 279 SDSLLNFLQHLREFGLV-FQRKRKSRRYYPTRLAINLSSGVSGAGGTAHQPGFIVVETNY 337
Query: 188 RMYAYST------------------------------------------SKLHCEILRLF 205
R+YAY+ S+L ++ LF
Sbjct: 338 RLYAYTGEARQRAPNSRXGVGTFLVTLEGLEGVWVWGXPSSSLPIPGPESELQIALIALF 397
Query: 206 SKIEYQLPNLIVGAITKESLYNAVENGLTAEQ------QNAHPRVADRIPSVLENVCDQI 259
S++ Y+ PN++V +T+ES+ A+ +G+TA+Q AHP + + P + + DQI
Sbjct: 398 SEMLYRFPNMVVAQVTRESVQQAIASGITAQQIIHFLRTRAHPVMLKQTPVLPPTITDQI 457
Query: 260 RLWESDLNRVEMTPAHYYDEFPSR------------------EDSKKMRLVVNAEIHMHM 301
RLWE + +R+ T Y++F S+ E+S K +VV H +
Sbjct: 458 RLWELERDRLRFTEGVLYNQFLSQVDFELLLAHARELGVLVFENSAKRLMVVTPAGHSDV 517
Query: 302 REFLRGQN 309
+ F + Q
Sbjct: 518 KRFWKRQK 525
>gi|154273196|ref|XP_001537450.1| conserved hypothetical protein [Ajellomyces capsulatus NAm1]
gi|150415962|gb|EDN11306.1| conserved hypothetical protein [Ajellomyces capsulatus NAm1]
Length = 455
Score = 128 bits (322), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 90/314 (28%), Positives = 155/314 (49%), Gaps = 67/314 (21%)
Query: 28 TLEDLEAYAIGQWERFLLQLI--SSAQAERSINFCSSTMKVFQRGLLIQ-RDKEAPRLTE 84
T+ L+ YA QWE L ++ S+ ++++ ++ Q L++ RD+ +T+
Sbjct: 109 TVAQLDYYARSQWEGVLGYMVGTSALGVQQAVTLSKGVKQLLQACHLVEVRDRRV-EITK 167
Query: 85 SGFQFLLMDTNAQLWYIVREYISNSQHDSMLAYERGINQADLISFLLELSFHVAGEAYNL 144
GF F+L D N Q+W+I+ Y+ N++ + G++ +++SFL LS G++Y
Sbjct: 168 DGFAFVLQDLNTQVWHILILYVENAE-------QIGMDSIEVLSFLFVLSSLELGQSYEK 220
Query: 145 KTLSEIQRSMIKDFADLGLVKLQQGRKESW-FIPT----------------IADSL---- 183
K L+ Q + D D G+V +E+ F PT I+ SL
Sbjct: 221 KHLTSTQLKTLADLTDFGIVYQHSPHQEATRFYPTRLATTLTSDSITLGSSISSSLTAPN 280
Query: 184 -----------------ETNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKESLY 226
ETN+R+YAY++S L ++ LF+ ++Y+ PNLI G +T++S+
Sbjct: 281 GVPSATSNEPSTGFIIIETNYRLYAYTSSPLQISLIALFTSLKYRFPNLITGKLTRQSVR 340
Query: 227 NAVENGLTAEQ------QNAHPRVADR-----------IPSVL-ENVCDQIRLWESDLNR 268
AVE G+TA+Q +AHP++ + +VL V DQIRLW+ + +R
Sbjct: 341 RAVEMGITADQIISYLTTHAHPQMRKYHATKPGANPVGVHTVLPPTVVDQIRLWQLERDR 400
Query: 269 VEMTPAHYYDEFPS 282
++ TP + +F S
Sbjct: 401 IKATPGFLFKDFVS 414
>gi|397471696|ref|XP_003807420.1| PREDICTED: LOW QUALITY PROTEIN: valine--tRNA ligase, mitochondrial
[Pan paniscus]
Length = 1673
Score = 128 bits (322), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 100/371 (26%), Positives = 168/371 (45%), Gaps = 101/371 (27%)
Query: 29 LEDLEAYAIGQWERFLLQLISSAQAERSINFCSSTMKVFQRGLLIQRDK-EAPRLTESGF 87
+ L+ YA +WE L ++ S A S + + Q GL+ + E P +T +GF
Sbjct: 205 VPSLDKYAEERWEVVLHFMVGSPSAAVSQDL---AQLLSQAGLMKSTEPGEPPCITSAGF 261
Query: 88 QFLLMDTNAQLWYIVREYISNSQHDSMLAYERGINQADLISFLLELSFHVAGEAYNLKTL 147
QFLL+DT AQLWY + +Y+ +Q RG++ +++SFL +LSF G+ Y+++ +
Sbjct: 262 QFLLLDTPAQLWYFMLQYLQTAQ-------SRGMDLVEILSFLFQLSFSTLGKDYSVEGM 314
Query: 148 SEIQRSMIKDFADLGLVKLQQGRKESWFIPT-IADSL-------------------ETNF 187
S+ + ++ + GLV Q+ RK + PT +A +L ETN+
Sbjct: 315 SDSLLNFLQHLREFGLV-FQRKRKSRRYYPTRLAINLSSGVSGAGGTVHQPGFIVVETNY 373
Query: 188 RMYAY---------------------------------------------STSKLHCEIL 202
R+YAY S S+L ++
Sbjct: 374 RLYAYTGEAGQRAPGRGGWGALXHFSXHLKEGLEGVWVWGCPPHPLSIPGSESELQIALI 433
Query: 203 RLFSKIEYQLPNLIVGAITKESLYNAVENGLTAEQ------QNAHPRVADRIPSVLENVC 256
LFS++ Y+ PN++V +T+ES+ A+ +G+TA+Q AHP + + P + +
Sbjct: 434 ALFSEMLYRFPNMVVAQVTRESVQQAIASGITAQQIIHFLRTRAHPVMLKQTPVLPPTIT 493
Query: 257 DQIRLWESDLNRVEMTPAHYYDEFPSR------------------EDSKKMRLVVNAEIH 298
DQIRLWE + +R+ T Y++F S+ E+S K +VV H
Sbjct: 494 DQIRLWELERDRLRFTEGVLYNQFLSQVDFELLLAHARELGVLVFENSAKRLMVVTPAGH 553
Query: 299 MHMREFLRGQN 309
++ F + Q
Sbjct: 554 SDVKRFWKRQK 564
>gi|119486893|ref|XP_001262366.1| TFIIH and nucleotide excision repair factor 3 complexes subunit
(Tfb2), putative [Neosartorya fischeri NRRL 181]
gi|119410523|gb|EAW20469.1| TFIIH and nucleotide excision repair factor 3 complexes subunit
(Tfb2), putative [Neosartorya fischeri NRRL 181]
Length = 468
Score = 128 bits (321), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 102/358 (28%), Positives = 167/358 (46%), Gaps = 87/358 (24%)
Query: 28 TLEDLEAYAIGQWERFLLQLISSAQ--AERSINFCSSTMKVFQRGLLIQ-RDKEAPRLTE 84
++ DL+ YA QWE L ++ ++ +R ++ ++ Q G L++ RD+ +T+
Sbjct: 123 SIADLDEYARRQWEGVLGYMVGTSGLGMQRDVSLSKGVKELLQAGHLVEIRDRRV-EITQ 181
Query: 85 SGFQFLLMDTNAQLWYIVREYISNSQHDSMLAYERGINQADLISFLLELSFHVAGEAYNL 144
GF F+L D Q+W+I+ Y+ + A G++ +++SF+ LS G++Y
Sbjct: 182 DGFAFVLQDVGTQVWHILVLYVES-------AAAIGMDSVEVLSFVFFLSSLELGKSYEK 234
Query: 145 KTLSEIQRSMIKDFADLGLVKLQQGRKESWFIPT----------------IADSL----- 183
K L+ Q + D AD G+V Q+ + F PT +A SL
Sbjct: 235 KQLTSNQLRTLTDLADFGIV-YQETPDATHFYPTRLATTLTSDSSTLSNPLAGSLSGPTG 293
Query: 184 -------------ETNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKESLYNAVE 230
ETN+R+YAY++S L ++ LF+ ++Y+ PNLI G IT++S+ AVE
Sbjct: 294 TSSSKAGSGFIIIETNYRLYAYTSSPLQISLIALFTTLKYRFPNLITGKITRQSVRRAVE 353
Query: 231 NGLTAEQ------QNAHPRV------------ADRIPSVL-ENVCDQIRLWESDLNRVEM 271
G+TA+Q +AHP++ A SVL V DQIRLW+ + +RV+
Sbjct: 354 MGITADQIISYLSTHAHPQMRKHNVSRSTSNQAGMPVSVLPPTVVDQIRLWQLERDRVKA 413
Query: 272 TPAHYYDEF--------PSR-----------EDSKKMRLVVNAEIHMHMREFLRGQNK 310
T + +F P R D K+M V H + FL+ + K
Sbjct: 414 THGFLFRDFNTLAEYEAPCRYAEEIGVLVWKSDRKRMFFVTR---HHQVAAFLKSRRK 468
>gi|145248676|ref|XP_001400677.1| TFIIH and nucleotide excision repair factor 3 complexes subunit
[Aspergillus niger CBS 513.88]
gi|134081344|emb|CAK41847.1| unnamed protein product [Aspergillus niger]
Length = 478
Score = 128 bits (321), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 94/320 (29%), Positives = 154/320 (48%), Gaps = 67/320 (20%)
Query: 18 MPSGITARLPTLEDLEAYAIGQWERFLLQLISSA-QAERSINFCSSTMKVFQRGLLIQ-R 75
+P+G +P L++ YA QWE L ++ + + ++ Q G L++ R
Sbjct: 128 VPAGSEVSIPELDE---YARRQWEGVLGYMVGTGGMGGPQVTLSKGVKELLQAGHLVEIR 184
Query: 76 DKEAPRLTESGFQFLLMDTNAQLWYIVREYISNSQHDSMLAYERGINQADLISFLLELSF 135
D+ +T+ GF F+L D + Q+W+I+ Y+ ++ M + +++SF+ LS
Sbjct: 185 DRRV-EITQDGFAFVLQDVSTQVWHILILYVESASAIKM-------DSVEVLSFVFLLSS 236
Query: 136 HVAGEAYNLKTLSEIQRSMIKDFADLGLVKLQQGRKESWFIPT------IADS------- 182
G++Y LS Q M+ D AD G+V Q+ F PT +DS
Sbjct: 237 LELGKSYEKNHLSSKQLRMLTDLADFGIV-YQESPDAPRFYPTRLATTLTSDSSALSNPL 295
Query: 183 ---------------------LETNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAIT 221
+ETN+R+YAY++S L ++ LF+ ++Y+ PNLI G IT
Sbjct: 296 LGSLSGPAGEASSKAGTGFIIIETNYRVYAYTSSPLQISLIALFTTLKYRFPNLITGKIT 355
Query: 222 KESLYNAVENGLTAEQ------QNAHPRV------------ADRIPSVL-ENVCDQIRLW 262
++S+ AVE G+TA+Q +AHP++ A PSVL V DQIRLW
Sbjct: 356 RQSVRRAVEMGITADQIISYLSTHAHPQMRKHNVSRSTSNQAGIPPSVLPPTVVDQIRLW 415
Query: 263 ESDLNRVEMTPAHYYDEFPS 282
+ + +RV+ T + +F S
Sbjct: 416 QLERDRVKATSGFLFKDFVS 435
>gi|440636738|gb|ELR06657.1| hypothetical protein GMDG_00274 [Geomyces destructans 20631-21]
Length = 470
Score = 127 bits (319), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 83/298 (27%), Positives = 145/298 (48%), Gaps = 50/298 (16%)
Query: 28 TLEDLEAYAIGQWERFLLQLISSAQAERSINF---CSSTMKVFQRGLLIQRDKE--APRL 82
T+ L+ YA QWE L +++S + ++ ++ Q G L+ + +
Sbjct: 135 TISFLDEYATAQWEGILHYVVNSTGDPSLLGAQYPSANVRQLLQMGTLVDSKGKYSGVGI 194
Query: 83 TESGFQFLLMDTNAQLWYIVREYISNSQHDSMLAYERGINQADLISFLLELSFHVAGEAY 142
T++GF FLL + NAQ+W ++ ++ +++ E ++ DL+SF L G AY
Sbjct: 195 TQAGFSFLLQEANAQVWTVLLLWLEHAE-------ELAMDHVDLLSFFFLLGSLELGLAY 247
Query: 143 NLKTLSEIQRSMIKDFADLGLV---KLQQGRKESWFIPTIADS----------------- 182
+ TLS Q+SM+ AD GLV + T+ S
Sbjct: 248 STTTLSTTQKSMLPILADFGLVYSPPSSSSFFPTRLATTLTSSASALRSIASGFSAAAAS 307
Query: 183 ------------LETNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKESLYNAVE 230
+ETN+R+YAY++S L +L LF+K+ + PN++ G +T++S+ A+E
Sbjct: 308 PASSGGTTGFIVIETNYRLYAYTSSPLQIAVLALFAKLSTRYPNMVSGRVTRDSVRGAIE 367
Query: 231 NGLTAEQ------QNAHPRVADRIPSVLENVCDQIRLWESDLNRVEMTPAHYYDEFPS 282
+G+TA+Q +AHP++ + P + V DQIRLW+ + R++ T + +F S
Sbjct: 368 HGITADQIISYLTTHAHPQLRRKSPVLPPTVVDQIRLWQIENERMKATAGFLFKDFAS 425
>gi|350639203|gb|EHA27557.1| transcription factor Tfb2 [Aspergillus niger ATCC 1015]
Length = 478
Score = 127 bits (319), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 93/322 (28%), Positives = 156/322 (48%), Gaps = 69/322 (21%)
Query: 21 GITARLP-----TLEDLEAYAIGQWERFLLQLISSA-QAERSINFCSSTMKVFQRGLLIQ 74
G+ +++P ++ +L+ YA QWE L ++ + + ++ Q G L++
Sbjct: 123 GVLSQVPVGSEVSIPELDEYARRQWEGVLGYMVGTGGMGGPQVTLSKGVKELLQAGHLVE 182
Query: 75 -RDKEAPRLTESGFQFLLMDTNAQLWYIVREYISNSQHDSMLAYERGINQADLISFLLEL 133
RD+ +T+ GF F+L D + Q+W+I+ Y+ ++ M + +++SF+ L
Sbjct: 183 IRDRRV-EITQDGFAFVLQDVSTQVWHILILYVESASAIKM-------DSVEVLSFVFLL 234
Query: 134 SFHVAGEAYNLKTLSEIQRSMIKDFADLGLVKLQQGRKESWFIPT------IADS----- 182
S G++Y LS Q M+ D AD G+V Q+ F PT +DS
Sbjct: 235 SSLELGKSYEKNHLSSKQLRMLTDLADFGIV-YQESPDAPRFYPTRLATTLTSDSSALSN 293
Query: 183 -----------------------LETNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVGA 219
+ETN+R+YAY++S L ++ LF+ ++Y+ PNLI G
Sbjct: 294 PLLGSLSGPAGEASSKAGTGFIIIETNYRVYAYTSSPLQISLIALFTTLKYRFPNLITGK 353
Query: 220 ITKESLYNAVENGLTAEQ------QNAHPRV------------ADRIPSVL-ENVCDQIR 260
IT++S+ AVE G+TA+Q +AHP++ A PSVL V DQIR
Sbjct: 354 ITRQSVRRAVEMGITADQIISYLSTHAHPQMRKHNVSRSTSNQAGIPPSVLPPTVVDQIR 413
Query: 261 LWESDLNRVEMTPAHYYDEFPS 282
LW+ + +RV+ T + +F S
Sbjct: 414 LWQLERDRVKATSGFLFKDFVS 435
>gi|242794214|ref|XP_002482325.1| TFIIH and nucleotide excision repair factor 3 complexes subunit
(Tfb2), putative [Talaromyces stipitatus ATCC 10500]
gi|218718913|gb|EED18333.1| TFIIH and nucleotide excision repair factor 3 complexes subunit
(Tfb2), putative [Talaromyces stipitatus ATCC 10500]
Length = 481
Score = 127 bits (318), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 87/311 (27%), Positives = 147/311 (47%), Gaps = 63/311 (20%)
Query: 28 TLEDLEAYAIGQWERFLLQLI--SSAQAERSINFCSSTMKVFQRGLLIQRDKEAPRLTES 85
++ DL+ YA QWE L ++ S +++ ++ Q G L++ +T+
Sbjct: 134 SIADLDEYARRQWEGVLGYMVGTSGPGVRETVSLSRGVKQLLQAGHLVEIHHGRVDITQD 193
Query: 86 GFQFLLMDTNAQLWYIVREYISNSQHDSMLAYERGINQADLISFLLELSFHVAGEAYNLK 145
GF F+L D N Q+W I+ Y+ +++ +N +++SF+ LS G++Y K
Sbjct: 194 GFAFVLQDVNTQVWQIIILYVESAK-------ALQVNDVEVLSFIFLLSSLELGQSYEKK 246
Query: 146 TLSEIQRSMIKDFADLGLV-KLQQGRKESWFIPT------IADS---------------- 182
L+ Q + D D G+V + + F PT +DS
Sbjct: 247 HLTPDQLRALTDLTDFGIVYQYPSAAEADRFYPTRLATTLTSDSSALSNTMSSALSAQTN 306
Query: 183 ------------LETNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKESLYNAVE 230
+ETN+R+YAY++S L ++ LF+ ++Y+ PNL+ G IT++S+ AVE
Sbjct: 307 AATGEPGSGFIIIETNYRLYAYTSSPLQISLIALFTTLKYRFPNLVTGKITRQSIRRAVE 366
Query: 231 NGLTAEQ------QNAHP--RVADRIPS-----------VLENVCDQIRLWESDLNRVEM 271
G+TA+Q +AHP R D + S + V DQIRLW+ + +R++
Sbjct: 367 MGITADQIISYLSTHAHPQMRKEDAVKSTSNTAGLPRSVLPPTVVDQIRLWQLERDRIKA 426
Query: 272 TPAHYYDEFPS 282
TP + EF S
Sbjct: 427 TPGFLFKEFAS 437
>gi|302684027|ref|XP_003031694.1| hypothetical protein SCHCODRAFT_15746 [Schizophyllum commune H4-8]
gi|300105387|gb|EFI96791.1| hypothetical protein SCHCODRAFT_15746 [Schizophyllum commune H4-8]
Length = 476
Score = 126 bits (317), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 98/338 (28%), Positives = 158/338 (46%), Gaps = 64/338 (18%)
Query: 1 SNLWKHLINGG-----ALPREPMPSGITARLPTLEDLEAYAIGQWERFLLQLISSAQAER 55
S+L + L GG +P EP + P + L+ YA+ +WE L ++SS +
Sbjct: 105 SSLRQALTGGGTQGSFGIPAEP---DGKQQAPDVGKLDGYALERWETILHFMVSSGTGQE 161
Query: 56 SINFCSSTMKVFQRGLLIQRDKEAPRLTESGFQFLLMDTNAQLWYIVREYISNSQHDSML 115
S + + + L++ R+T +GFQFLL+ +AQLW ++ Y+ L
Sbjct: 162 SAQPAAGVTYLLKESGLMESRGGTLRITSAGFQFLLLTPHAQLWELLIHYLR-------L 214
Query: 116 AYERGINQADLISFLLELSFHVAGEA------------YNLKTLSEIQRSMIKDFADLGL 163
I+ +++SFL +S G+ Y+ + LS Q ++ D GL
Sbjct: 215 QEANNIDLVEVLSFLFMVSTTEFGQGNLEMLTGDLHQEYSTENLSTSQLVVMDDLRHYGL 274
Query: 164 VKLQQGRKESWFIPT-IADS------------------------LETNFRMYAYSTSKLH 198
+ Q+ + F PT +A + LETN+R+YAY+ + L
Sbjct: 275 L-WQRKKNYPRFSPTRLATTLTSSAPPLPTSSGPTSGPKEGFIVLETNYRVYAYTDNALQ 333
Query: 199 CEILRLFSKIEYQLPNLIVGAITKESLYNAVENGLTAEQ------QNAHPRVADRI---- 248
+L LF +Y+ PNL+VG+IT+ES+ A+ NG+TA+Q +AHP++ +
Sbjct: 334 TAVLNLFITPKYRFPNLVVGSITRESVKRAMSNGITADQIISYLITHAHPQMHKNVCLVA 393
Query: 249 -PSVLENVCDQIRLWESDLNRVEMTPAHYYDEFPSRED 285
P + V DQIRLWE + NR + Y EF S+ D
Sbjct: 394 NPLLPVTVQDQIRLWELERNRTKSQEGFLYTEFASQAD 431
>gi|212535854|ref|XP_002148083.1| TFIIH and nucleotide excision repair factor 3 complexes subunit
(Tfb2), putative [Talaromyces marneffei ATCC 18224]
gi|210070482|gb|EEA24572.1| TFIIH and nucleotide excision repair factor 3 complexes subunit
(Tfb2), putative [Talaromyces marneffei ATCC 18224]
Length = 481
Score = 126 bits (317), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 90/322 (27%), Positives = 153/322 (47%), Gaps = 68/322 (21%)
Query: 17 PMPSGITARLPTLEDLEAYAIGQWERFLLQLI--SSAQAERSINFCSSTMKVFQRGLLIQ 74
P P+ ++ + DL+ YA QWE L ++ S +++ ++ Q G L++
Sbjct: 128 PDPNAVS-----IADLDEYARRQWEGVLGYMVGTSGPGVRETVSLSRGVKQLLQAGHLVE 182
Query: 75 RDKEAPRLTESGFQFLLMDTNAQLWYIVREYISNSQHDSMLAYERGINQADLISFLLELS 134
+T+ GF F+L D N Q+W I+ Y+ +++ +N +++SF+ LS
Sbjct: 183 IHHGRVDITQDGFAFVLQDVNTQVWQIIILYVESAK-------ALQVNDVEVLSFIFLLS 235
Query: 135 FHVAGEAYNLKTLSEIQRSMIKDFADLGLVKLQQGRKES-WFIPT------IADS----- 182
G++Y + L+ Q + D D G++ E+ F PT +DS
Sbjct: 236 SLELGQSYEKRHLTPDQLRALADLTDFGIIYQHAPASEADRFYPTRLATTLTSDSSALSN 295
Query: 183 -----------------------LETNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVGA 219
+ETN+R+YAY++S L ++ LF+ ++Y+ PNL+ G
Sbjct: 296 TMSSSLSAQTNAATGEPGSGFIIIETNYRLYAYTSSPLQISLIALFTTLKYRFPNLVTGK 355
Query: 220 ITKESLYNAVENGLTAEQ------QNAHPRVADR-----------IP-SVL-ENVCDQIR 260
IT++S+ AVE G+TA+Q +AHP++ IP SVL V DQIR
Sbjct: 356 ITRQSIRRAVEMGITADQIISYLSTHAHPQMRKEGAVKSTSNTAGIPRSVLPPTVVDQIR 415
Query: 261 LWESDLNRVEMTPAHYYDEFPS 282
LW+ + +R++ TP + EF S
Sbjct: 416 LWQLERDRIKATPGFLFKEFAS 437
>gi|212535856|ref|XP_002148084.1| TFIIH and nucleotide excision repair factor 3 complexes subunit
(Tfb2), putative [Talaromyces marneffei ATCC 18224]
gi|210070483|gb|EEA24573.1| TFIIH and nucleotide excision repair factor 3 complexes subunit
(Tfb2), putative [Talaromyces marneffei ATCC 18224]
Length = 422
Score = 126 bits (316), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 89/311 (28%), Positives = 148/311 (47%), Gaps = 63/311 (20%)
Query: 28 TLEDLEAYAIGQWERFLLQLI--SSAQAERSINFCSSTMKVFQRGLLIQRDKEAPRLTES 85
++ DL+ YA QWE L ++ S +++ ++ Q G L++ +T+
Sbjct: 75 SIADLDEYARRQWEGVLGYMVGTSGPGVRETVSLSRGVKQLLQAGHLVEIHHGRVDITQD 134
Query: 86 GFQFLLMDTNAQLWYIVREYISNSQHDSMLAYERGINQADLISFLLELSFHVAGEAYNLK 145
GF F+L D N Q+W I+ Y+ + A +N +++SF+ LS G++Y +
Sbjct: 135 GFAFVLQDVNTQVWQIIILYVES-------AKALQVNDVEVLSFIFLLSSLELGQSYEKR 187
Query: 146 TLSEIQRSMIKDFADLGLVKLQQGRKES-WFIPT------IADS---------------- 182
L+ Q + D D G++ E+ F PT +DS
Sbjct: 188 HLTPDQLRALADLTDFGIIYQHAPASEADRFYPTRLATTLTSDSSALSNTMSSSLSAQTN 247
Query: 183 ------------LETNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKESLYNAVE 230
+ETN+R+YAY++S L ++ LF+ ++Y+ PNL+ G IT++S+ AVE
Sbjct: 248 AATGEPGSGFIIIETNYRLYAYTSSPLQISLIALFTTLKYRFPNLVTGKITRQSIRRAVE 307
Query: 231 NGLTAEQ------QNAHPRVADR-----------IP-SVL-ENVCDQIRLWESDLNRVEM 271
G+TA+Q +AHP++ IP SVL V DQIRLW+ + +R++
Sbjct: 308 MGITADQIISYLSTHAHPQMRKEGAVKSTSNTAGIPRSVLPPTVVDQIRLWQLERDRIKA 367
Query: 272 TPAHYYDEFPS 282
TP + EF S
Sbjct: 368 TPGFLFKEFAS 378
>gi|70982185|ref|XP_746621.1| TFIIH and nucleotide excision repair factor 3 complexes subunit
(Tfb2) [Aspergillus fumigatus Af293]
gi|66844244|gb|EAL84583.1| TFIIH and nucleotide excision repair factor 3 complexes subunit
(Tfb2), putative [Aspergillus fumigatus Af293]
gi|159122143|gb|EDP47265.1| TFIIH and nucleotide excision repair factor 3 complexes subunit
(Tfb2), putative [Aspergillus fumigatus A1163]
Length = 479
Score = 125 bits (315), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 101/358 (28%), Positives = 166/358 (46%), Gaps = 87/358 (24%)
Query: 28 TLEDLEAYAIGQWERFLLQLISSAQ--AERSINFCSSTMKVFQRGLLIQ-RDKEAPRLTE 84
++ DL+ Y+ QWE L ++ ++ +R ++ ++ Q G L++ RD+ +T+
Sbjct: 134 SIADLDEYSRRQWEGVLGYMVGTSGLGMQRDVSLSKGVKELLQAGHLVEIRDRRV-EITQ 192
Query: 85 SGFQFLLMDTNAQLWYIVREYISNSQHDSMLAYERGINQADLISFLLELSFHVAGEAYNL 144
GF F L D Q+W+I+ Y+ + A G++ +++SF+ LS G++Y
Sbjct: 193 DGFAFALQDVGTQVWHILVLYVES-------AAAIGMDSVEVLSFVFFLSSLELGKSYEK 245
Query: 145 KTLSEIQRSMIKDFADLGLVKLQQGRKESWFIPT----------------IADSL----- 183
K L+ Q + D AD G+V Q+ + F PT +A SL
Sbjct: 246 KQLTSNQLRTLTDLADFGIV-YQETPDATHFYPTRLATTLTSDSSTLSNPLAGSLSGPTG 304
Query: 184 -------------ETNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKESLYNAVE 230
ETN+R+YAY++S L ++ LF+ ++Y+ PNLI G IT++S+ AVE
Sbjct: 305 TSSSKAGSGFIIIETNYRLYAYTSSPLQISLIALFTTLKYRFPNLITGKITRQSVRRAVE 364
Query: 231 NGLTAEQ------QNAHPRV------------ADRIPSVL-ENVCDQIRLWESDLNRVEM 271
G+TA+Q +AHP++ A SVL V DQIRLW+ + +RV+
Sbjct: 365 MGITADQIISYLSTHAHPQMRKHNVSRSTSNQAGMPVSVLPPTVVDQIRLWQLERDRVKA 424
Query: 272 TPAHYYDEF--------PSR-----------EDSKKMRLVVNAEIHMHMREFLRGQNK 310
T + +F P R D K+M V H + FL+ + K
Sbjct: 425 THGFLFRDFNTLAEYEAPCRYAEEIGVLVWKSDRKRMFFVTR---HHQVAAFLKSRRK 479
>gi|339237219|ref|XP_003380164.1| general transcription factor IIH subunit 4 [Trichinella spiralis]
gi|316977049|gb|EFV60220.1| general transcription factor IIH subunit 4 [Trichinella spiralis]
Length = 674
Score = 125 bits (314), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 95/321 (29%), Positives = 148/321 (46%), Gaps = 53/321 (16%)
Query: 28 TLEDLEAYAIGQWERFLLQL-ISSAQAERSINFCSSTMKVFQRGLLIQRDKEAPRLTESG 86
+ DL++YA +WE L L + SAQ+E+S++ T +V Q LIQ +LT G
Sbjct: 133 SFADLDSYASERWESVLKYLALPSAQSEKSVSV--ETKRVLQDSGLIQLCDSKMQLTSDG 190
Query: 87 FQFLLMDTNAQLWYIVREYISNSQHDSMLAYERGINQADLISFLLELSFHVAGEAYNLKT 146
FQF+L D QLW + Y++ + ++G D I +L+ AY+ +
Sbjct: 191 FQFILYDRRQQLWTYLLHYLAQLE-------KKGSPVHDCIMLILQACLGSHRAAYSTEN 243
Query: 147 LSEIQRSMIKDFADLGLVKLQQGRKESWFIPTIADSL------------------ETNFR 188
L+E + I+ ++GLV Q+ R WF T S+ ETNFR
Sbjct: 244 LTEAALNFIQHLREIGLVH-QRKRSAGWFYYTPLISVLTGLKSSSSSSKEGFLIVETNFR 302
Query: 189 MYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKESLYNAVENGLTAEQ------QNAHP 242
+Y Y+ S L I+ F + Y+ PNL+ + +ES+ A + ++AEQ NAH
Sbjct: 303 VYCYTDSVLDLAIVSTFCEPLYRFPNLVACILNRESVRRAFQVNISAEQIIQYLFSNAHK 362
Query: 243 RVADRIPSVLENVCDQIRLWESDLNRVEMTPAHYYDEFPSREDSKKMR------------ 290
+ + P++ V DQI+LWE + +R + P Y F S D +R
Sbjct: 363 NMQKQTPTIPSTVTDQIKLWEMERDRFKFDPGVMYSNFFSDTDYITIRDYAKDLGVLLCE 422
Query: 291 ------LVVNAEIHMHMREFL 305
LVV+A+ H +FL
Sbjct: 423 HEANRALVVSADGHEQSNQFL 443
>gi|452824378|gb|EME31381.1| transcription initiation factor TFIIH subunit H4 [Galdieria
sulphuraria]
Length = 740
Score = 124 bits (312), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 82/251 (32%), Positives = 129/251 (51%), Gaps = 45/251 (17%)
Query: 72 LIQRDKEAPRLTESGFQFLLMDTNAQLWYIVREYISNSQHDSMLA--YERGINQADLISF 129
LI++ ++ R+T GFQFLL DT Q+W+I+ + +++ + + ++ + +++ F
Sbjct: 183 LIEQVEDGFRITTVGFQFLLKDTREQVWFILENILFSNETNLKIGTKLQKRVMNEEMVEF 242
Query: 130 LLELSFHVAGEAYNLKTLSEIQRSMIKDFADLGLVKLQQG---RKESWFIPT-------- 178
L ELSF +G AY+ KTLS+ Q+ I ADLGL+ L K+S+F T
Sbjct: 243 LFELSFCASGVAYHWKTLSKTQQIYIPYLADLGLIYLHISSSLEKDSYFYVTPLGVTLTR 302
Query: 179 ----IADS-------------------LETNFRMYAYSTSKLHCEILRLFSKIEYQLPNL 215
+ D ++TNFR+Y Y+ +L LF + Y+LPN+
Sbjct: 303 SICWLGDKNNYLLLEDWSNVDNDCRMIVQTNFRVYVYTNCTFQISLLSLFIQFLYRLPNM 362
Query: 216 IVGAITKESLYNAVENGLTAEQ-----QN-AHPRVADRIPSVLENVCDQIRLWESDLNRV 269
VG IT++S+ A+ NG+TA+Q QN HP + ++P + DQIRLWE+ RV
Sbjct: 363 AVGVITRDSIRTALNNGITAQQMISYLQNHMHPNMKGKLPIT---IIDQIRLWEAQRFRV 419
Query: 270 EMTPAHYYDEF 280
A D F
Sbjct: 420 TTKHALLLDHF 430
>gi|315041383|ref|XP_003170068.1| TFIIH basal transcription factor complex p52 subunit [Arthroderma
gypseum CBS 118893]
gi|311345102|gb|EFR04305.1| TFIIH basal transcription factor complex p52 subunit [Arthroderma
gypseum CBS 118893]
Length = 484
Score = 124 bits (312), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 94/357 (26%), Positives = 161/357 (45%), Gaps = 87/357 (24%)
Query: 28 TLEDLEAYAIGQWER---FLLQLISSAQAERSINFCSSTMKVFQRGLLIQ-RDKEAPRLT 83
++ DL+ YA QWE +++ + S + +I ++ Q L++ RD+ +T
Sbjct: 134 SVADLDEYARQQWEAVLGYMVGMSSLSGGRETITLSKGVKQLLQACHLVEIRDRRV-EIT 192
Query: 84 ESGFQFLLMDTNAQLWYIVREYISNSQHDSMLAYERGINQADLISFLLELSFHVAGEAYN 143
+ GF F+L D N Q+W+I+ Y+ N++ G+ +++SF+ LS G++Y
Sbjct: 193 KEGFAFVLQDVNTQVWHILILYVENAEAI-------GMESVEVLSFIFLLSSLELGQSYE 245
Query: 144 LKTLSEIQRSMIKDFADLGLV-KLQQGRKESWFIPT------IADSL------------- 183
K L+ Q + D D G+V + + F PT +DSL
Sbjct: 246 KKNLTPTQLRTLADLTDFGIVYQHTPASGSTRFYPTRLATTLTSDSLAMSGPISGEPTVP 305
Query: 184 -------------------ETNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKES 224
ETN+R+YAY++S L ++ LF+ ++++ PNLI G IT++S
Sbjct: 306 AAAAGATTAGDAGTGFIIVETNYRLYAYTSSPLQISLISLFTTLKFRFPNLITGKITRQS 365
Query: 225 LYNAVENGLTAEQ------QNAHPRVADRIPSVLE--------NVCDQIRLWESDLNRVE 270
+ A+E G+TA+Q +AHP++ S V DQIRLW+ + +R++
Sbjct: 366 VRRAIEMGITADQIVSYLTTHAHPQMRKTKKSTTNVSSTVLPPTVVDQIRLWQLERDRIK 425
Query: 271 MTPAHYYDEFPS-------------------REDSKKMRLVVNAEIHMHMREFLRGQ 308
T + EF + R DS++M V H + FLR +
Sbjct: 426 ATSGFLFKEFDTFAEFEAPCKYAEEIGVLVWRSDSRRMFFVTR---HEQVAAFLRSR 479
>gi|452977455|gb|EME77221.1| hypothetical protein MYCFIDRAFT_146475 [Pseudocercospora fijiensis
CIRAD86]
Length = 476
Score = 124 bits (312), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 90/315 (28%), Positives = 148/315 (46%), Gaps = 61/315 (19%)
Query: 28 TLEDLEAYAIGQWERFLLQLISSAQAERS--INFCSSTMKVFQRGLLIQRDKEAPR--LT 83
T+E L+ +A QWE L ++ SA + S ++ +ST K+ + G +Q + +T
Sbjct: 117 TIEFLDTFARKQWETILYYVVGSANSALSGGMDVHNSTKKLLENGEFVQMQNGGRQRFIT 176
Query: 84 ESGFQFLLMDTNAQLWYIVREYISNSQHDSMLAYERGINQADLISFLLELSFHVAGEAYN 143
GF FLL D NAQ+W ++ Y+ S+ + + + D++SFL L G +Y+
Sbjct: 177 TDGFTFLLQDVNAQIWSLLIVYLQTSETECFM------DPVDVLSFLFTLGSLELGTSYS 230
Query: 144 LKTLSEIQRSMIKDFADLGLVKLQQGRKESWFIPTIADS--------------------- 182
L++ Q M++D +DLGL+ + + ++ +A +
Sbjct: 231 TSNLTKTQLQMLEDLSDLGLI-FHPEQSDRYYPTRLATTLTSDAPALLNSSHTSTTTTVS 289
Query: 183 ------------------LETNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKES 224
LETN+R+YAY+ S L IL LF+ + + PNL+ ITK S
Sbjct: 290 ASSNDDLAASANEKGFIILETNYRLYAYTNSPLLISILSLFASLHTRYPNLVTAKITKTS 349
Query: 225 LYNAVENGLTAE------QQNAHP---RVAD--RIPSVLENVCDQIRLWESDLNRVEMTP 273
+ A+ +G+T+ Q +AHP R A P + V DQIRLW+ + R+ T
Sbjct: 350 VQAAISSGITSNQIISYLQTHAHPILRRTASMHNAPILPPTVVDQIRLWQIEGERMTSTK 409
Query: 274 AHYYDEFPSREDSKK 288
+ E S+ED +K
Sbjct: 410 GYLIREVGSKEDYEK 424
>gi|302495702|ref|XP_003009866.1| hypothetical protein ARB_03925 [Arthroderma benhamiae CBS 112371]
gi|291173385|gb|EFE29221.1| hypothetical protein ARB_03925 [Arthroderma benhamiae CBS 112371]
Length = 386
Score = 124 bits (311), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 93/356 (26%), Positives = 162/356 (45%), Gaps = 85/356 (23%)
Query: 28 TLEDLEAYAIGQWER---FLLQLISSAQAERSINFCSSTMKVFQRGLLIQRDKEAPRLTE 84
++ DL+ YA QWE +++ + S + +I ++ Q L++ +T+
Sbjct: 36 SVADLDEYARQQWEAVLGYMVGMSSLSGGRETITLSKGVKQLLQACHLVEVRDRRVEITK 95
Query: 85 SGFQFLLMDTNAQLWYIVREYISNSQHDSMLAYERGINQADLISFLLELSFHVAGEAYNL 144
GF F+L D N Q+W+I+ Y+ N++ G+ +++SF+ LS G++Y
Sbjct: 96 EGFAFVLQDVNTQVWHILILYVENAE-------AIGMESVEVLSFIFLLSSLELGQSYEK 148
Query: 145 KTLSEIQRSMIKDFADLGLV-KLQQGRKESWFIPT------IADSL-------------- 183
K L+ Q + D D G+V + + F PT +DSL
Sbjct: 149 KDLTPTQLRTLADLTDFGIVYQHTPASGSTRFYPTRLATTLTSDSLAMSGPISGEPAVPT 208
Query: 184 ------------------ETNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKESL 225
ETN+R+YAY++S L ++ LF+ ++++ PNLI G IT++S+
Sbjct: 209 TTAGTTTSGDAGTGFIIVETNYRLYAYTSSPLQISLISLFTTLKFRFPNLITGKITRQSV 268
Query: 226 YNAVENGLTAEQ------QNAHPRV-------ADRIPSVL-ENVCDQIRLWESDLNRVEM 271
A+E G+TA+Q +AHP++ ++ SVL V DQIRLW+ + +R++
Sbjct: 269 RRAIEMGITADQIISYLTTHAHPQMRKTKKSTSNVSSSVLPPTVVDQIRLWQLERDRIKA 328
Query: 272 TPAHYYDEFPS-------------------REDSKKMRLVVNAEIHMHMREFLRGQ 308
T + EF + + DS++M V H + FLR +
Sbjct: 329 TSGFLFKEFDTFAEFEAPCKYAEEIGVLVWKSDSRRMFFVTR---HEQVAAFLRSR 381
>gi|354546081|emb|CCE42810.1| hypothetical protein CPAR2_204530 [Candida parapsilosis]
Length = 451
Score = 124 bits (311), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 87/333 (26%), Positives = 158/333 (47%), Gaps = 91/333 (27%)
Query: 32 LEAYAIGQWERFLLQLISSAQAERSINFCSSTMKVFQRGLLIQRDKEAPRLTESGFQFLL 91
L+ +A +WE L ++ + E + S + + + G L++ + E +T +GFQFLL
Sbjct: 87 LDKFASHEWENILHFMVGT---EGTPTPSRSVLSLLKLGGLMEGESELT-ITNTGFQFLL 142
Query: 92 MDTNAQLWYIVREYISNSQHDSMLAYERGINQADLISFLLELSFHVAGEAYNLKTLSEIQ 151
D NAQ+W ++ +Y++ L E +N D+++F+ L G++Y++ +LSE Q
Sbjct: 143 QDVNAQIWTLLLQYLN-------LTSESNMNPVDVLNFIFILGCLELGKSYSVLSLSETQ 195
Query: 152 RSMIKDFADLGLVKLQQGRKESWFIPT------IADS----------------------- 182
SM+ D DLGL+ Q+ + S F PT +DS
Sbjct: 196 VSMLADLKDLGLI-YQKSKTSSRFYPTRLATTLTSDSSALKTPSMAVEQALEESEGQMMT 254
Query: 183 --------LETNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKESLYNAVENGLT 234
+ETNF++YAY+ S L IL LF +++ + N++ G IT+ES+ NA+ NG+T
Sbjct: 255 STSRESIIIETNFKIYAYTNSPLEIAILNLFVQMKTRFSNMVCGQITRESIRNALYNGIT 314
Query: 235 AEQ------QNAHPRVA------------------------------------DRIPSVL 252
++Q +AHP++ ++ +
Sbjct: 315 SDQIIKFLETHAHPQMKALAKEKLDKKVEFDASHNINTAGGAPQSKTDGTISQHKLEVIP 374
Query: 253 ENVCDQIRLWESDLNRVEMTPAHYYDEFPSRED 285
NV DQI+LW+ +L+R++ + + +F ++++
Sbjct: 375 PNVVDQIKLWQLELDRIQTVEGYLFKDFANQQE 407
>gi|327298217|ref|XP_003233802.1| TFIIH and nucleotide excision repair factor 3 complexes subunit
Tfb2 [Trichophyton rubrum CBS 118892]
gi|326463980|gb|EGD89433.1| TFIIH and nucleotide excision repair factor 3 complexes subunit
Tfb2 [Trichophyton rubrum CBS 118892]
Length = 484
Score = 124 bits (310), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 95/357 (26%), Positives = 165/357 (46%), Gaps = 87/357 (24%)
Query: 28 TLEDLEAYAIGQWER---FLLQLISSAQAERSINFCSSTMKVFQRGLLIQ-RDKEAPRLT 83
++ DL+ YA QWE +++ + S + +I ++ Q L++ RD+ +T
Sbjct: 134 SVADLDEYARQQWEAVLGYMVGMSSLSGGRETITLSKGVKQLLQACHLVEIRDRRV-EIT 192
Query: 84 ESGFQFLLMDTNAQLWYIVREYISNSQHDSMLAYERGINQADLISFLLELSFHVAGEAYN 143
+ GF F+L D N Q+W+I+ Y+ N++ G+ +++SF+ LS G++Y
Sbjct: 193 KEGFAFVLQDVNTQVWHILILYVENAE-------AIGMESVEVLSFIFLLSSLELGQSYE 245
Query: 144 LKTLSEIQRSMIKDFADLGLV-KLQQGRKESWFIPT------IADSL------------- 183
K L+ Q + D D G+V + + F PT +DSL
Sbjct: 246 KKDLTPTQLRTLADLTDFGIVYQHTPASGSTRFYPTRLATTLTSDSLAMSGPISGEPTVP 305
Query: 184 -------------------ETNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKES 224
ETN+R+YAY++S L ++ LF+ ++++ PNLI G IT++S
Sbjct: 306 TTSAGTTTSGDAGTGFIIVETNYRLYAYTSSPLQISLISLFTTLKFRFPNLITGKITRQS 365
Query: 225 LYNAVENGLTAEQ------QNAHPRV-------ADRIPSVL-ENVCDQIRLWESDLNRVE 270
+ A+E G+TA+Q +AHP++ ++ SVL V DQIRLW+ + +R++
Sbjct: 366 VRRAIEMGITADQIISYLTTHAHPQMRKTKKSTSNVSSSVLPPTVVDQIRLWQLERDRIK 425
Query: 271 MTPAHYYDEFPS-------------------REDSKKMRLVVNAEIHMHMREFLRGQ 308
T + EF + + DS++M V H + FLR +
Sbjct: 426 ATSGFLFKEFDTFAEFEAPCKYAEEIGVLVWKSDSRRMFFVTR---HEQVAAFLRSR 479
>gi|302667863|ref|XP_003025510.1| hypothetical protein TRV_00272 [Trichophyton verrucosum HKI 0517]
gi|291189624|gb|EFE44899.1| hypothetical protein TRV_00272 [Trichophyton verrucosum HKI 0517]
Length = 386
Score = 124 bits (310), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 93/356 (26%), Positives = 162/356 (45%), Gaps = 85/356 (23%)
Query: 28 TLEDLEAYAIGQWER---FLLQLISSAQAERSINFCSSTMKVFQRGLLIQRDKEAPRLTE 84
++ DL+ YA QWE +++ + S + +I ++ Q L++ +T+
Sbjct: 36 SVADLDEYARQQWEAVLGYMVGMSSLSGGRETITLSKGVKQLLQACHLVEVRDRRVEITK 95
Query: 85 SGFQFLLMDTNAQLWYIVREYISNSQHDSMLAYERGINQADLISFLLELSFHVAGEAYNL 144
GF F+L D N Q+W+I+ Y+ N++ G+ +++SF+ LS G++Y
Sbjct: 96 EGFAFVLQDVNTQVWHILILYVENAE-------AIGMESVEVLSFVFLLSSLELGQSYEK 148
Query: 145 KTLSEIQRSMIKDFADLGLV-KLQQGRKESWFIPT------IADSL-------------- 183
K L+ Q + D D G+V + + F PT +DSL
Sbjct: 149 KDLTPTQLRTLADLTDFGIVYQHTPASGSTRFYPTRLATTLTSDSLAMSGPISGEPAVPT 208
Query: 184 ------------------ETNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKESL 225
ETN+R+YAY++S L ++ LF+ ++++ PNLI G IT++S+
Sbjct: 209 TTAGTTTSGDAGTGFIIVETNYRLYAYTSSPLQISLISLFTTLKFRFPNLITGKITRQSV 268
Query: 226 YNAVENGLTAEQ------QNAHPRV-------ADRIPSVL-ENVCDQIRLWESDLNRVEM 271
A+E G+TA+Q +AHP++ ++ SVL V DQIRLW+ + +R++
Sbjct: 269 RRAIEMGITADQIISYLTTHAHPQMRKTKKSTSNVSSSVLPPTVVDQIRLWQLERDRIKA 328
Query: 272 TPAHYYDEFPS-------------------REDSKKMRLVVNAEIHMHMREFLRGQ 308
T + EF + + DS++M V H + FLR +
Sbjct: 329 TSGFLFKEFDTFAEFEAPCKYAEEIGVLVWKSDSRRMFFVTR---HEQVAAFLRSR 381
>gi|255721741|ref|XP_002545805.1| TFIIH basal transcription factor complex subunit 2 [Candida
tropicalis MYA-3404]
gi|240136294|gb|EER35847.1| TFIIH basal transcription factor complex subunit 2 [Candida
tropicalis MYA-3404]
Length = 494
Score = 124 bits (310), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 88/326 (26%), Positives = 155/326 (47%), Gaps = 83/326 (25%)
Query: 32 LEAYAIGQWERFLLQLISSAQAERSINFCSSTMKVFQRGLLIQRDKEAPRLTESGFQFLL 91
L+ +A +WE L ++ + E + S + + + G L++ R+T SGFQFLL
Sbjct: 136 LDNFASSKWETILHFMVGT---EATATPSDSVLSLLKLGGLMEGPNNKLRITNSGFQFLL 192
Query: 92 MDTNAQLWYIVREYISNSQHDSMLAYERGINQADLISFLLELSFHVAGEAYNLKTLSEIQ 151
D NAQ+W ++ +Y++ +Q E ++ D+++F+ L G++Y + TLSE Q
Sbjct: 193 QDVNAQIWTLLLQYLNLTQ-------ELNMDPVDVLNFIFVLGSLELGKSYAVSTLSETQ 245
Query: 152 RSMIKDFADLGLVKLQQGRKESWFIPT------IADS----------------------- 182
SM+ D D GLV Q+ F PT +DS
Sbjct: 246 VSMLADLKDYGLV-YQRSDTSGRFYPTRLATTLTSDSAALKTPAMAMDEEEQQVVTKESI 304
Query: 183 -LETNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKESLYNAVENGLTAEQ---- 237
+ETNF++YAY+ S L IL LF +++ + N++ G IT+ES+ NA+ NG+TA+Q
Sbjct: 305 IIETNFKLYAYTKSPLEIAILNLFVQLKTRFANMVCGQITRESIRNALYNGITADQIIKF 364
Query: 238 --QNAHPRV----ADRIPSVLE--------------------------------NVCDQI 259
+AH ++ +++ +E NV DQI
Sbjct: 365 LETHAHSQMRILAKEKLDKKIEFDTSHNINTAGGAPQSKTDGSISQHKLEILPPNVVDQI 424
Query: 260 RLWESDLNRVEMTPAHYYDEFPSRED 285
+LW+ +L+R++ + + +F ++++
Sbjct: 425 KLWQLELDRIQTFDGYLFKDFANQQE 450
>gi|241958748|ref|XP_002422093.1| TFIIH subunit, putative; tanscription initiation factor IIB,
putative [Candida dubliniensis CD36]
gi|223645438|emb|CAX40094.1| TFIIH subunit, putative [Candida dubliniensis CD36]
Length = 494
Score = 123 bits (309), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 88/326 (26%), Positives = 155/326 (47%), Gaps = 83/326 (25%)
Query: 32 LEAYAIGQWERFLLQLISSAQAERSINFCSSTMKVFQRGLLIQRDKEAPRLTESGFQFLL 91
L+ +A +WE L ++ + E + S + + + G L++ R+T SGFQFLL
Sbjct: 136 LDLFASQKWETILHFMVGT---ESTATPSDSVLSLLKLGGLMEGPNNDLRITNSGFQFLL 192
Query: 92 MDTNAQLWYIVREYISNSQHDSMLAYERGINQADLISFLLELSFHVAGEAYNLKTLSEIQ 151
D NAQ+W ++ +Y++ +Q E ++ D+++F+ L G++Y++ +LSE Q
Sbjct: 193 QDVNAQIWTLLLQYLNLTQ-------ELNMDPVDVLNFIFILGSLELGKSYSVSSLSETQ 245
Query: 152 RSMIKDFADLGLVKLQQGRKESWFIPT------IADS----------------------- 182
SM+ D D GLV Q+ F PT +DS
Sbjct: 246 VSMLADLKDYGLV-YQRSDTSGRFYPTRLATTLTSDSAALKTPSMAMDEEEQQVVSKESI 304
Query: 183 -LETNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKESLYNAVENGLTAEQ---- 237
+ETNF++YAY+ S L IL LF + + N++ G IT+ES+ NA+ NG+TA+Q
Sbjct: 305 IIETNFKIYAYTKSPLEIAILNLFVHFKTRFANMVCGQITRESIRNALYNGITADQIIKF 364
Query: 238 --QNAHPRV----ADRIPSVLE--------------------------------NVCDQI 259
+AHP++ +++ +E NV DQI
Sbjct: 365 LETHAHPQMRILAKEKLDKKIEFDTSHNINTAGGAPQSKTDGMISQHKLEILPPNVVDQI 424
Query: 260 RLWESDLNRVEMTPAHYYDEFPSRED 285
+LW+ +L+R++ + + +F ++++
Sbjct: 425 KLWQLELDRIQTFDGYLFKDFSNQQE 450
>gi|444727354|gb|ELW67853.1| Valyl-tRNA synthetase, mitochondrial [Tupaia chinensis]
Length = 1382
Score = 123 bits (308), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 77/248 (31%), Positives = 130/248 (52%), Gaps = 51/248 (20%)
Query: 88 QFLLMDTNAQLWYIVREYISNSQHDSM----------------LAYERG--------INQ 123
QFLL+DT AQLWY + +Y+ +Q M L RG ++
Sbjct: 129 QFLLLDTPAQLWYFMLQYLQTAQSRGMDLVEILSFLFQLSFSTLGKRRGERGRVHTVMDL 188
Query: 124 ADLISFLLELSFHVAGEAYNLKTLSEIQRSMIKDFADLGLVKLQQGRKESWFIPT-IADS 182
+++SFL +LSF G+ Y+++ +S+ + ++ + GLV Q+ RK + PT +A +
Sbjct: 189 VEILSFLFQLSFSTLGKDYSVEGMSDSLLNFLQHLREFGLV-FQRKRKSRRYYPTRLAIN 247
Query: 183 L-------------------ETNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKE 223
L ETN+R+YAY+ S+L ++ LFS++ Y+ PN++V +T+E
Sbjct: 248 LSSGVSGAGGTAHQPGFIVVETNYRLYAYTESELQIALIALFSEMLYRFPNMVVAQVTRE 307
Query: 224 SLYNAVENGLTAEQ------QNAHPRVADRIPSVLENVCDQIRLWESDLNRVEMTPAHYY 277
S+ A+ +G+TA+Q AHP + + P + + DQIRLWE + +R+ T Y
Sbjct: 308 SVQQAIASGITAQQIIHFLRTRAHPVMLKQTPVLPPTITDQIRLWELERDRLRFTEGVLY 367
Query: 278 DEFPSRED 285
++F S+ D
Sbjct: 368 NQFLSQVD 375
>gi|68490740|ref|XP_710812.1| hypothetical protein CaO19.13268 [Candida albicans SC5314]
gi|68490763|ref|XP_710801.1| hypothetical protein CaO19.5846 [Candida albicans SC5314]
gi|46432046|gb|EAK91553.1| hypothetical protein CaO19.5846 [Candida albicans SC5314]
gi|46432058|gb|EAK91564.1| hypothetical protein CaO19.13268 [Candida albicans SC5314]
gi|238879997|gb|EEQ43635.1| TFIIH basal transcription factor complex subunit 2 [Candida
albicans WO-1]
Length = 494
Score = 123 bits (308), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 88/326 (26%), Positives = 155/326 (47%), Gaps = 83/326 (25%)
Query: 32 LEAYAIGQWERFLLQLISSAQAERSINFCSSTMKVFQRGLLIQRDKEAPRLTESGFQFLL 91
L+ +A +WE L ++ + E + S + + + G L++ R+T SGFQFLL
Sbjct: 136 LDLFASQKWETILHFMVGT---ESTATPSDSVLSLLKLGGLMEGPNNDLRITNSGFQFLL 192
Query: 92 MDTNAQLWYIVREYISNSQHDSMLAYERGINQADLISFLLELSFHVAGEAYNLKTLSEIQ 151
D NAQ+W ++ +Y++ +Q E ++ D+++F+ L G++Y++ +LSE Q
Sbjct: 193 QDVNAQIWTLLLQYLNLTQ-------ELNMDPVDVLNFIFVLGSLELGKSYSVLSLSETQ 245
Query: 152 RSMIKDFADLGLVKLQQGRKESWFIPT------IADS----------------------- 182
SM+ D D GLV Q+ F PT +DS
Sbjct: 246 VSMLADLKDYGLV-YQRSDTSGRFYPTRLATTLTSDSAALKTPSMAMDEEEQQVATKESI 304
Query: 183 -LETNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKESLYNAVENGLTAEQ---- 237
+ETNF++YAY+ S L IL LF + + N++ G IT+ES+ NA+ NG+TA+Q
Sbjct: 305 IIETNFKIYAYTKSPLEIAILNLFVHFKTRFANMVCGQITRESIRNALYNGITADQIIKF 364
Query: 238 --QNAHPRV----ADRIPSVLE--------------------------------NVCDQI 259
+AHP++ +++ +E NV DQI
Sbjct: 365 LETHAHPQMRILAKEKLDKKIEFDTSHNINTAGGAPQSKTDGMVSQHKLEILPPNVVDQI 424
Query: 260 RLWESDLNRVEMTPAHYYDEFPSRED 285
+LW+ +L+R++ + + +F ++++
Sbjct: 425 KLWQLELDRIQTFDGYLFKDFSNQQE 450
>gi|193633122|ref|XP_001945987.1| PREDICTED: general transcription factor IIH subunit 4-like
[Acyrthosiphon pisum]
Length = 471
Score = 122 bits (307), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 93/352 (26%), Positives = 166/352 (47%), Gaps = 64/352 (18%)
Query: 7 LINGG--ALPREPMPSGITARLPTLEDLEAYAIGQWERFLLQLISSAQAERSINFCSSTM 64
L+ GG +P M + AR ++ L++YA +WE L ++ S S +
Sbjct: 132 LMGGGRSTVPNSDMTADPKAR--DIDFLDSYAYERWECILHYMVGSKHE----GISSDAV 185
Query: 65 KVF-QRGLLIQRDKEAPRLTESGFQFLLMDTNAQLWYIVREYISNSQHDSMLAYERGINQ 123
+V GL+++ ++P +T +GFQFLL+D Q+WY + Y+ + RG++
Sbjct: 186 RVLLNAGLMVRDTDDSPVITSTGFQFLLLDMATQVWYFMLRYMETVE-------SRGLDL 238
Query: 124 ADLISFLLELSFHVAGEAYNLKTLSEIQRSMIKDFADLGLVKLQQGRKESWFIPT----- 178
A ++FL ++ G Y +SE ++ ++ + GLV Q+ RK F PT
Sbjct: 239 AQCLTFLFQIHLGTLGWDYITDEMSENLQAFLQHLREFGLV-YQRKRKAGRFYPTRLVIE 297
Query: 179 --IADS--------------LETNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITK 222
+S +ETNFR+YA + S L ++ LF+ + Y+ PN+ G +T+
Sbjct: 298 MGQGNSRTSERMKNKERYIVVETNFRIYAMTDSDLKVALVALFTHMLYRFPNMSAGILTR 357
Query: 223 ESLYNAVENGLTAEQ------QNAHPRVADRIPSVLENVCDQIRLWESDLNRVEMTPAHY 276
+S+ A+ +G+TA Q + HP++ + + + V DQI LWE++ NR+ T
Sbjct: 358 DSVRTALRSGITAAQIVRFLTVHTHPQMQE--CGMPQTVIDQIYLWENERNRLTYTDGVL 415
Query: 277 YDEFPSREDSKKMR------------------LVVNAEIHMHMREFLRGQNK 310
Y + D + ++ +VV+ + H +R+F + Q K
Sbjct: 416 YSNINTPNDYETIKNYAADIGALVWCDERRRNIVVSTDGHDDVRKFWKKQPK 467
>gi|194388768|dbj|BAG60352.1| unnamed protein product [Homo sapiens]
Length = 386
Score = 122 bits (306), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 78/247 (31%), Positives = 135/247 (54%), Gaps = 38/247 (15%)
Query: 29 LEDLEAYAIGQWERFLLQLISSAQAERSINFCSSTMKVFQRGLLIQRDK-EAPRLTESGF 87
+ L+ YA +WE L ++ S A S + + Q GL+ + E P +T +GF
Sbjct: 151 VPSLDKYAEERWEVVLHFMVGSPSAAVSQDLAQ---LLSQAGLMKSTEPGEPPCITSAGF 207
Query: 88 QFLLMDTNAQLWYIVREYISNSQHDSMLAYERGINQADLISFLLELSFHVAGEAYNLKTL 147
QFLL+DT AQLWY + +Y+ +Q RG++ +++SFL +LSF G+ Y+++ +
Sbjct: 208 QFLLLDTPAQLWYFMLQYLQTAQ-------SRGMDLVEILSFLFQLSFSTLGKDYSVEGM 260
Query: 148 SEIQRSMIKDFADLGLVKLQQGRKESWFIPT-IADSL-------------------ETNF 187
S+ + ++ + GLV Q+ RK + PT +A +L ETN+
Sbjct: 261 SDSLLNFLQHLREFGLV-FQRKRKSRRYYPTRLAINLSSGVSGAGGTVHQPGFIVVETNY 319
Query: 188 RMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKESLYNAVENGLTAEQ------QNAH 241
R+YAY+ S+L ++ LFS++ Y+ PN++V +T+ES+ A+ +G+TA+Q AH
Sbjct: 320 RLYAYTESELQIALIALFSEMLYRFPNMVVAQVTRESVQQAIASGITAQQIIHFLRTRAH 379
Query: 242 PRVADRI 248
P + ++
Sbjct: 380 PVMLKQV 386
>gi|326483225|gb|EGE07235.1| transcription factor Tfb2 [Trichophyton equinum CBS 127.97]
Length = 484
Score = 122 bits (305), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 95/357 (26%), Positives = 164/357 (45%), Gaps = 87/357 (24%)
Query: 28 TLEDLEAYAIGQWER---FLLQLISSAQAERSINFCSSTMKVFQRGLLIQ-RDKEAPRLT 83
++ DL+ YA QWE +++ + S + +I ++ Q L++ RD+ +T
Sbjct: 134 SVADLDEYARQQWEAVLGYMVGMSSLSGGRETITLSKGVKQLLQACHLVEIRDRRV-EIT 192
Query: 84 ESGFQFLLMDTNAQLWYIVREYISNSQHDSMLAYERGINQADLISFLLELSFHVAGEAYN 143
+ GF F+L D N Q+W+I+ Y+ N++ G+ +++SF+ LS G++Y
Sbjct: 193 KEGFAFVLQDVNTQVWHILILYVENAE-------AIGMESVEVLSFIFLLSSLELGQSYE 245
Query: 144 LKTLSEIQRSMIKDFADLGLV-KLQQGRKESWFIPT------IADSL------------- 183
K L+ Q + D D G+V + + F PT +DSL
Sbjct: 246 KKDLTPTQLRTLADLTDFGIVYQHTPASGSARFYPTRLATTLTSDSLAMSGPISGEPAVP 305
Query: 184 -------------------ETNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKES 224
ETN R+YAY++S L ++ LF+ ++++ PNLI G IT++S
Sbjct: 306 TTTSGTTTSGDAGTGFIIVETNHRLYAYTSSPLQISLISLFTTLKFRFPNLITGKITRQS 365
Query: 225 LYNAVENGLTAEQ------QNAHPRV-------ADRIPSVL-ENVCDQIRLWESDLNRVE 270
+ A+E G+TA+Q +AHP++ ++ SVL V DQIRLW+ + +R++
Sbjct: 366 VRRAIEMGITADQIISYLTTHAHPQMRKTKKSTSNVSSSVLPPTVVDQIRLWQLERDRIK 425
Query: 271 MTPAHYYDEFPS-------------------REDSKKMRLVVNAEIHMHMREFLRGQ 308
T + EF + + DS++M V H + FLR +
Sbjct: 426 ATSGFLFKEFDTFAEFEAPCKYAEEIGVLVWKSDSRRMFFVTR---HEQVAAFLRSR 479
>gi|406862938|gb|EKD15987.1| tfiih and nucleotide excision repair factor 3 complexes subunit
[Marssonina brunnea f. sp. 'multigermtubi' MB_m1]
Length = 421
Score = 122 bits (305), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 94/365 (25%), Positives = 168/365 (46%), Gaps = 75/365 (20%)
Query: 7 LINGGALPREPMPS-GITARLPTLEDLEAYAIGQWE---RFLLQLISSAQAERSINFCSS 62
L GG +PS TA E L+ YA +WE F++ + ++ + +S
Sbjct: 58 LTGGGEQQSFGIPSHDSTASGVDAEFLDNYARERWEDILHFVVNSVGNSMRQDGTGPPTS 117
Query: 63 TMKVFQRGLLIQRDKEAPR-LTESGFQFLLMDTNAQLWYIVREYISNSQHDSMLAYERGI 121
+ + G L+ + + +T++GF FLL + NAQ+W ++ +I N++ + + E
Sbjct: 118 VRLLLEAGKLVTTGRRSGGGITQAGFSFLLQEVNAQVWALLLLWIENAEKMELESVE--- 174
Query: 122 NQADLISFLLELSFHVAGEAYNLKTLSEIQRSMIKDFADLGLVKLQQGRKESWFIPTIAD 181
++SFL L G++Y+ TLS QR+M+K D GLV + +F ++
Sbjct: 175 ----VLSFLFMLGSLELGKSYSTATLSASQRAMLKYLVDFGLVYSPSSTPQQFFPTRLST 230
Query: 182 SL------------------------------ETNFRMYAYSTSKLHCEILRLFSKIEYQ 211
+L ETN+R+YAY+ S L +L LF+K+ +
Sbjct: 231 TLTSDASGLRSVSAGFDDALKSESGTKGFIIIETNYRLYAYTNSPLQIAVLALFTKMGVR 290
Query: 212 LPNLIVGAITKESLYNAVENGLTAEQ------QNAHPRVADRI-----PSVLENVCDQIR 260
PN++ G +T++S+ NA+ +G+T++Q +AHP++ P + V DQIR
Sbjct: 291 YPNMVTGRVTRKSVANAISHGITSDQIISYLRAHAHPQLVKAAAVNGNPVLPPTVVDQIR 350
Query: 261 LWESDLNRVEMTPAHYYDEFPS-------------------REDSKKMRLVVNAEIHMHM 301
LW+ + R++ T + EF + + D+K+M V H +
Sbjct: 351 LWQIENERMKATAGFLFKEFETQKEYEGCARYADENGVLVWKNDAKRMFFVTR---HEQL 407
Query: 302 REFLR 306
R++L+
Sbjct: 408 RDYLK 412
>gi|296818081|ref|XP_002849377.1| RNA polymerase II transcription factor B subunit 2 [Arthroderma
otae CBS 113480]
gi|238839830|gb|EEQ29492.1| RNA polymerase II transcription factor B subunit 2 [Arthroderma
otae CBS 113480]
Length = 484
Score = 122 bits (305), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 95/357 (26%), Positives = 164/357 (45%), Gaps = 87/357 (24%)
Query: 28 TLEDLEAYAIGQWER---FLLQLISSAQAERSINFCSSTMKVFQRGLLIQ-RDKEAPRLT 83
++ DL+ YA QWE +++ + S + +I ++ Q L++ RD+ +T
Sbjct: 134 SVADLDEYARQQWEAVLGYMVGMSSLSGGRETITLSKGVKQLLQACHLVEIRDRRV-EIT 192
Query: 84 ESGFQFLLMDTNAQLWYIVREYISNSQHDSMLAYERGINQADLISFLLELSFHVAGEAYN 143
+ GF F+L D N Q+W+I+ Y+ N++ M + E ++SF+ LS G++Y
Sbjct: 193 KEGFAFVLQDVNTQVWHILILYVENAEAIHMESVE-------VLSFIFLLSSLELGQSYE 245
Query: 144 LKTLSEIQRSMIKDFADLGLV-KLQQGRKESWFIPT------IADSL------------- 183
L+ Q + D D G+V + + F PT +DSL
Sbjct: 246 KNDLTPTQLRTLADLTDFGIVYQHTPASGSTRFYPTRLATTLTSDSLAMPGPVSGEPVVP 305
Query: 184 -------------------ETNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKES 224
ETN+R+YAY++S L ++ LF+ ++++ PNLI G IT++S
Sbjct: 306 APSTGPTSATDGGTGFIIVETNYRLYAYTSSPLQISLISLFTTLKFRFPNLITGKITRQS 365
Query: 225 LYNAVENGLTAEQ------QNAHPRV-------ADRIPSVL-ENVCDQIRLWESDLNRVE 270
+ A+E G+TA+Q +AHP++ ++ S+L V DQIRLW+ + +R++
Sbjct: 366 VRRAIEMGITADQIVSYLTTHAHPQMRKTKKSTSNVAASILPPTVVDQIRLWQLERDRIK 425
Query: 271 MTPAHYYDEFPS-------------------REDSKKMRLVVNAEIHMHMREFLRGQ 308
T + EF + R DS++M V H + FLR +
Sbjct: 426 ATSGFLFKEFDTFAEFEAPCKYAEEIGVLVWRSDSRRMFFVTR---HEQVAAFLRSR 479
>gi|119179887|ref|XP_001241468.1| hypothetical protein CIMG_08631 [Coccidioides immitis RS]
gi|392866653|gb|EAS30172.2| transcription factor Tfb2 [Coccidioides immitis RS]
Length = 487
Score = 121 bits (304), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 93/328 (28%), Positives = 157/328 (47%), Gaps = 74/328 (22%)
Query: 21 GITARLP-----TLEDLEAYAIGQWERFLLQLISSAQ---AERSINFCSSTMKVFQRGLL 72
G+ + +P T+ DL+ YA QWE L ++ + ++ + Q L
Sbjct: 122 GVMSSMPDPHPMTVSDLDDYARRQWEGVLGYMVGTNSLGIQRENVTLSKGVKSLLQACHL 181
Query: 73 IQ-RDKEAPRLTESGFQFLLMDTNAQLWYIVREYISNSQHDSMLAYERGINQADLISFLL 131
++ RD+ +T+ GF F+L D N Q+W+I+ Y+ N++ G++ +++SFL
Sbjct: 182 VEVRDRRV-EITKEGFAFVLQDVNTQVWHILILYVENAE-------AIGMDSVEVLSFLF 233
Query: 132 ELSFHVAGEAYNLKTLSEIQRSMIKDFADLGLVKLQQGRKESW-FIPT------IADSL- 183
LS G++Y+ K L+ Q + D D G+V ES F PT +DS+
Sbjct: 234 LLSSLELGQSYDKKHLTSTQLRTLADLTDFGIVYQHSPASESTRFYPTRLATTLTSDSMA 293
Query: 184 ------------------------------ETNFRMYAYSTSKLHCEILRLFSKIEYQLP 213
ETN+R+YAY++S L ++ LF+ ++Y+ P
Sbjct: 294 LSSSISGNLAPAGPNINAATGAPGTGFIIIETNYRLYAYTSSPLQISLIALFTTLKYRFP 353
Query: 214 NLIVGAITKESLYNAVENGLTAEQ------QNAHPRV------------ADRIPSVL-EN 254
NL+ G +T++S+ AVE G+TA+Q +AHP++ A + SVL
Sbjct: 354 NLVTGKLTRQSIRRAVEMGITADQIISYLTTHAHPQMRKVNASKSTSTTAGLLASVLPPT 413
Query: 255 VCDQIRLWESDLNRVEMTPAHYYDEFPS 282
V DQIRLW+ + +R++ TP + +F S
Sbjct: 414 VVDQIRLWQLERDRLKATPGFLFKDFAS 441
>gi|330797174|ref|XP_003286637.1| hypothetical protein DICPUDRAFT_31198 [Dictyostelium purpureum]
gi|325083385|gb|EGC36839.1| hypothetical protein DICPUDRAFT_31198 [Dictyostelium purpureum]
Length = 471
Score = 121 bits (304), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 93/312 (29%), Positives = 150/312 (48%), Gaps = 57/312 (18%)
Query: 23 TARLPTLEDLEAYAIGQWERFLLQLISSAQAERSINFCSSTMKVFQRGLLIQRDKEAP-R 81
T ++P + DL+ Y+ QWE+ L L S A + F S + L +RD++
Sbjct: 123 TNKIPNINDLDNYSKKQWEQVLYFL--SDDAAQPSKFISD---LLLSSNLTRRDQDGSLS 177
Query: 82 LTESGFQFLLMDTNAQLWYIVREYISNSQHDSMLAYERGINQADLISFLLELSFHVAGEA 141
+T GF+FLL D Q+W ++ Y+++ + +G ++ DL+ FL LSF G+
Sbjct: 178 ITSDGFKFLLKDVYTQIWTLLIVYLNDLEKKRREGLTQG-SRNDLLGFLFRLSFLQLGKG 236
Query: 142 YNLKTLSEIQRSMIKDFADLGLVKLQQGRKESWFIPT----------------------- 178
Y + L+E+Q+ + GL+ ++ +F PT
Sbjct: 237 YLVGELTELQKEYLICLKQFGLIYMKSD-ASLFFYPTRLIISLTTGKTLSLIQTLAVDKI 295
Query: 179 ---------IADS-----------LETNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVG 218
+A S LETN+R+YAY+ S L +L LF K+ Y+LPNL VG
Sbjct: 296 NSSSNSANTVASSTIEKKESGYIVLETNYRLYAYTASSLQISLLSLFVKMLYRLPNLAVG 355
Query: 219 AITKESLYNAVENGLTAEQ------QNAHPRVADRIPSVLENVCDQIRLWESDLNRVEMT 272
IT+ES+ A+ +G+TA+Q NAHP + + + V +QI LWE + NR+ T
Sbjct: 356 IITRESIRTALIHGITADQIIDFIRHNAHPNAVNNGQPIPDVVAEQILLWEQERNRITYT 415
Query: 273 PAHYYDEFPSRE 284
+ Y+ FP+ +
Sbjct: 416 KSVLYNSFPTTD 427
>gi|66800623|ref|XP_629237.1| general transcription factor IIH, polypeptide 4 [Dictyostelium
discoideum AX4]
gi|74850716|sp|Q54C29.1|TF2H4_DICDI RecName: Full=General transcription factor IIH subunit 4; AltName:
Full=TFIIH basal transcription factor complex subunit 4
gi|60462610|gb|EAL60813.1| general transcription factor IIH, polypeptide 4 [Dictyostelium
discoideum AX4]
Length = 483
Score = 121 bits (303), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 88/300 (29%), Positives = 148/300 (49%), Gaps = 58/300 (19%)
Query: 27 PTLEDLEAYAIGQWERFLLQLISSAQAERSINFCSSTMKVFQRGLLIQRDKEAPRLTESG 86
P+++DL++Y+ QWE+ L L ++ ++ ++ L +++ + +T G
Sbjct: 156 PSIDDLDSYSKSQWEKVLYFL-----SDDTVQPSKLISELLLSSNLTKQEGDGLSITSEG 210
Query: 87 FQFLLMDTNAQLWYIVREYISNSQHDSMLAYERGINQA---DLISFLLELSFHVAGEAYN 143
F+FLL D Q+W ++ Y+ + L ++G DL+SFL LSF G Y
Sbjct: 211 FKFLLKDVYTQIWTLLIVYLDD------LEKKKGKGSGSRNDLLSFLFRLSFLNLGRGYL 264
Query: 144 LKTLSEIQRSMIKDFADLGLVKLQ---------------------------------QGR 170
+ LSE Q+ + GL+ ++ Q +
Sbjct: 265 VSELSEQQKEYLFALKQFGLIYMRTDSSILFYPTRLIISLTTGKTLSLIQSISSERTQTQ 324
Query: 171 KESWFIPTIADSLETNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKESLYNAVE 230
KE +I LETN+R+YAY++S L +L LF K+ Y+LPNL VG IT+ES+ A+
Sbjct: 325 KEQGYI-----VLETNYRLYAYTSSSLQISLLSLFVKMLYRLPNLAVGIITRESIRTALI 379
Query: 231 NGLTAEQ------QNAHPRVADRIPSVLENVCDQIRLWESDLNRVEMTPAHYYDEFPSRE 284
+G+TA+Q N+HP A+ + + V +QI LWE++ NR+ T + Y+ FP+ +
Sbjct: 380 HGITADQIIDFVRHNSHPNAANSGQPIPDVVAEQILLWEAERNRITYTKSVLYNSFPTND 439
>gi|281208616|gb|EFA82792.1| general transcription factor IIH [Polysphondylium pallidum PN500]
Length = 458
Score = 121 bits (303), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 93/308 (30%), Positives = 156/308 (50%), Gaps = 49/308 (15%)
Query: 28 TLEDLEAYAIGQWERFLLQLISSAQAERSINFCSSTMKVFQRGLLIQRDKEAPRLTESGF 87
+++ L++Y+ QWE+ L L S +E + + + L + + + +T GF
Sbjct: 138 SVDQLDSYSKSQWEKVLYFL--SDDSETPPELIADLLALSN---LTKLNDGSMVITSEGF 192
Query: 88 QFLLMDTNAQLWYIVREYISNSQHDSMLAYERGINQADLISFLLELSFHVAGEAYNLKTL 147
+FLL D Q+W ++ Y+++ + RG ++ D ++FL +LSF G AY + L
Sbjct: 193 KFLLKDIYTQIWTLIIVYLNSLE-------TRGKSRRDALAFLFKLSFLSLGSAYYVNDL 245
Query: 148 SEIQRSMIKDFADLGLVKLQQGRKESWF-------------IPTIAD------------- 181
+E ++S++ D GLV ++ + E ++ + I D
Sbjct: 246 TEDEKSLLFDLRQFGLVYIRSEKSEIFYPTRLIISLTTGKTVTVIKDLAKEMSNTQKEQG 305
Query: 182 --SLETNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKESLYNAVENGLTAEQ-- 237
LETNFR+YAY+ S L +L LF K+ Y+LPNL VG +T+ES+ A +G+TA+Q
Sbjct: 306 YIILETNFRIYAYTASSLQISLLSLFVKMLYRLPNLSVGILTRESIRTAFLHGITADQIV 365
Query: 238 ----QNAHPRVADRIPSVLENVCDQIRLWESDLNRVEMTPAHYYDEFPSREDSKKMRLVV 293
QN HP + E V +QIR+WE++ NR+ A +D FP++E S M L
Sbjct: 366 DFIKQNGHPNMLK--VGAPEIVFEQIRIWENERNRILYKKAVLFDSFPTQE-SFNMTLQY 422
Query: 294 NAEIHMHM 301
++ +M
Sbjct: 423 AKDLSFYM 430
>gi|171681598|ref|XP_001905742.1| hypothetical protein [Podospora anserina S mat+]
gi|170940758|emb|CAP66407.1| unnamed protein product [Podospora anserina S mat+]
Length = 540
Score = 120 bits (302), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 74/272 (27%), Positives = 136/272 (50%), Gaps = 63/272 (23%)
Query: 81 RLTESGFQFLLMDTNAQLWYIVREYISNSQHDSMLAYERG-------INQADLISFLLEL 133
+++E GF FLL + NAQ+W ++ ++ + + LA E+G I+ +++SFL L
Sbjct: 230 QISEHGFNFLLQEANAQVWTLLLLWLEAADRNKALAKEQGTDITGTAIDNVEMLSFLFML 289
Query: 134 SFHVAGEAYNLKTLSEIQRSMIKDFADLGLVKLQQGRKESWFIPTIADSL---------- 183
+ G AY+ L+E +++M+ AD GL+ + + R + ++ +A +L
Sbjct: 290 ASLELGRAYDTSALTETRKNMLPALADFGLIYIDRDRPQQYYPTRLATTLTSLSTMRSVS 349
Query: 184 -----------------------------------ETNFRMYAYSTSKLHCEILRLFSKI 208
ETN+R+YAY++S L IL+LF ++
Sbjct: 350 ASIDAATKKTPGDAGSLGADSTPTAPADENGGIVVETNYRIYAYTSSPLQIAILKLFCRL 409
Query: 209 EYQLPNLIVGAITKESLYNAVENGLTAEQ------QNAHPRV----ADRIPSVL-ENVCD 257
+ PN++ +T+ES+ A++ G+TA Q +AHP++ A R +V+ V D
Sbjct: 410 HMRFPNMVTARLTRESVQEAIKEGITANQIIDYLVAHAHPQMRRAAAARGTTVIPPTVMD 469
Query: 258 QIRLWESDLNRVEMTPAHYYDEFPSREDSKKM 289
QIRLW+ + R++ TP + +F S E+ +++
Sbjct: 470 QIRLWQLESQRMQKTPGFQFKDFESVEEYRQL 501
>gi|149238950|ref|XP_001525351.1| TFIIH basal transcription factor complex subunit 2 [Lodderomyces
elongisporus NRRL YB-4239]
gi|146450844|gb|EDK45100.1| TFIIH basal transcription factor complex subunit 2 [Lodderomyces
elongisporus NRRL YB-4239]
Length = 503
Score = 120 bits (302), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 91/335 (27%), Positives = 157/335 (46%), Gaps = 91/335 (27%)
Query: 32 LEAYAIGQWERFLLQLISSAQAERSINFCSSTMKVFQRGLLIQRDKEAP-RLTESGFQFL 90
L+++A +WE L ++ + + S +K+ GL+ Q +++ +T +GFQFL
Sbjct: 136 LDSFASQKWESILHFMVGTEGTKPPSKSVLSLLKL--GGLMEQHEEDGTLNITNTGFQFL 193
Query: 91 LMDTNAQLWYIVREYISNSQHDSMLAYERGINQADLISFLLELSFHVAGEAYNLKTLSEI 150
L D NAQ+W ++ +Y++ +Q E ++ D+++F+ L G +Y++ LSE
Sbjct: 194 LQDVNAQIWTLLLQYLNLTQ-------ELNMDAVDVLNFIFILGSLELGNSYSVSNLSET 246
Query: 151 QRSMIKDFADLGLVKLQQGRKESWFIPT------IADS---------------------- 182
Q SM+ D D GLV Q+ S F PT +DS
Sbjct: 247 QVSMLADLKDYGLV-YQKSDTSSRFYPTRLATTLTSDSAALKTPSMAVEQALDETETSLA 305
Query: 183 ----------LETNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKESLYNAVENG 232
+ETNF+MYAY+ S L IL LF ++ + N+I G IT+ES+ NA+ NG
Sbjct: 306 SSTQTKESIIIETNFKMYAYTNSPLEIAILNLFVHMKTRFSNMICGQITRESIRNALYNG 365
Query: 233 LTAEQ------QNAHPRV----ADRIPSVLE----------------------------- 253
+TA+Q +AHP++ +R+ +E
Sbjct: 366 ITADQIIKFLETHAHPQMRALAKERLDKKVEFDASHNINTAGGAPQSKTDGAISQHRLEV 425
Query: 254 ---NVCDQIRLWESDLNRVEMTPAHYYDEFPSRED 285
NV DQI+LW+ +L+R++ + + +F ++++
Sbjct: 426 LPPNVVDQIKLWQLELDRIQTFDGYLFKDFANQQE 460
>gi|392594381|gb|EIW83705.1| transcription factor Tfb2 [Coniophora puteana RWD-64-598 SS2]
Length = 393
Score = 120 bits (302), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 78/254 (30%), Positives = 125/254 (49%), Gaps = 51/254 (20%)
Query: 27 PTLEDLEAYAIGQWERFLLQLISSAQAERSINFCSSTMKVFQR-GLLIQRDKEAPRLTES 85
P++E L+ YA+ +WE L ++SS Q + + + QR GL+ ++T S
Sbjct: 141 PSVETLDGYAVQRWETILHYMVSSGQGQYPTKPTQGVLYLLQRSGLMASYHGSTLQITSS 200
Query: 86 GFQFLLMDTNAQLWYIVREYISNSQHDSMLAYERGINQADLISFLLELSFHVAGEAYNLK 145
GFQFLL QLW ++ +Y+ + ER ++ +++SF LS G Y+ +
Sbjct: 201 GFQFLLYSPRDQLWDLLLQYLH-------MVEERQMDLVEVLSFFFMLSTMELGREYSTE 253
Query: 146 TLSEIQRSMIKDFADLGLVKLQQGRKESWFIPT--------------------------- 178
LSE Q++M++D D GLV Q+ F PT
Sbjct: 254 PLSETQKAMLEDLRDYGLV-WQRKASSKRFSPTRLATTLTSVSPSLPTAGGSRNPGSAPG 312
Query: 179 ---IADS------------LETNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKE 223
+A+S LETN+R+YAY+ + L +L LF ++Y+ PNL+VG +T+E
Sbjct: 313 ASSVANSTGINTNDHGFIVLETNYRVYAYTDNPLQIAVLNLFITLKYRFPNLVVGMLTRE 372
Query: 224 SLYNAVENGLTAEQ 237
S+ A+ NG++AEQ
Sbjct: 373 SVRRALGNGISAEQ 386
>gi|326474968|gb|EGD98977.1| TFIIH and nucleotide excision repair factor 3 complexes subunit
Tfb2 [Trichophyton tonsurans CBS 112818]
Length = 489
Score = 120 bits (302), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 87/310 (28%), Positives = 149/310 (48%), Gaps = 65/310 (20%)
Query: 28 TLEDLEAYAIGQWER---FLLQLISSAQAERSINFCSSTMKVFQRGLLIQ-RDKEAPRLT 83
++ DL YA QWE +++ + S + +I ++ Q L++ RD+ +T
Sbjct: 134 SVADLNEYARQQWEAVLGYMVGMSSLSGGRETITLSKGVKQLLQACHLVEIRDRRV-EIT 192
Query: 84 ESGFQFLLMDTNAQLWYIVREYISNSQHDSMLAYERGINQADLISFLLELSFHVAGEAYN 143
+ GF F+L D N Q+W+I+ Y+ N++ G+ +++SF+ LS G++Y
Sbjct: 193 KEGFAFVLQDVNTQVWHILILYVENAE-------AIGMESVEVLSFIFLLSSLELGQSYE 245
Query: 144 LKTLSEIQRSMIKDFADLGLV-KLQQGRKESWFIPT------IADSL------------- 183
K L+ Q + D D G+V + + F PT +DSL
Sbjct: 246 KKDLTPTQLRTLADLTDFGIVYQHTPASGSARFYPTRLATTLTSDSLAMSGPISGEPAVP 305
Query: 184 -------------------ETNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKES 224
ETN R+YAY++S L ++ LF+ ++++ PNLI G IT++S
Sbjct: 306 TTTSGTTTSGDAGTGFIIVETNHRLYAYTSSPLQISLISLFTTLKFRFPNLITGKITRQS 365
Query: 225 LYNAVENGLTAEQ------QNAHPRV-------ADRIPSVL-ENVCDQIRLWESDLNRVE 270
+ A+E G+TA+Q +AHP++ ++ SVL V DQIRLW+ + +R++
Sbjct: 366 VRRAIEMGITADQIISYLTTHAHPQMRKTKKSTSNVSSSVLPPTVVDQIRLWQLERDRIK 425
Query: 271 MTPAHYYDEF 280
T + EF
Sbjct: 426 ATSGFLFKEF 435
>gi|405952750|gb|EKC20525.1| General transcription factor IIH subunit 4 [Crassostrea gigas]
Length = 380
Score = 120 bits (301), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 86/297 (28%), Positives = 143/297 (48%), Gaps = 39/297 (13%)
Query: 1 SNLWKHLINGGA---LPREPMPSGITARLPTLEDLEAYAIGQWERFLLQLISSAQAERSI 57
SN+ L+ GG P+P A+ + L+ YA+ +WE L ++ S + +
Sbjct: 75 SNMKVALLGGGMDSQFTGGPLPPDKHAK--DVPFLDKYALERWECVLHFMVGSTEGTEGV 132
Query: 58 NFCSSTMKVFQRGLLIQRD--KEAPRLTESGFQFLLMDTNAQLWYIVREYISNSQHDSML 115
+ + V L+ D P +T +GFQFLLMD +Q+WY + +Y+ +
Sbjct: 133 S--KDIIDVLLNAGLMTMDGVDPMPSITPAGFQFLLMDIGSQVWYFMLQYLDTVE----- 185
Query: 116 AYERGINQADLISFLLELSFHVAGEAYNLKTLSEIQRSMIKDFADLGLVKLQQGRKESWF 175
RG++ D +SFL +LSF G+ +IQR A + L G+ +
Sbjct: 186 --ARGMDLIDCLSFLFQLSFSTLGK-------RKIQRYYPTRLA----INLAAGQSDFTS 232
Query: 176 IPTIADSL--ETNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKESLYNAVENGL 233
+ L ETN+R+YAY+ S L ++ LF ++ Y+ P VG +T+ S+ +A+ G+
Sbjct: 233 VGKNTGYLMVETNYRVYAYTDSPLQVALVALFCEMLYRFPTFSVGNLTRVSVRDALIRGI 292
Query: 234 TAEQQNAHPRVADRIPSVLENVCDQIRLWESDLNRVEMTPAHYYDEFPSREDSKKMR 290
TA+Q P + V DQ+RLWE + +R + YD+F S+ D + +R
Sbjct: 293 TADQ----------TPVIPSTVTDQVRLWELERDRFKFMEGVLYDQFLSQNDFELLR 339
>gi|389642093|ref|XP_003718679.1| RNA polymerase II transcription factor B subunit 2 [Magnaporthe
oryzae 70-15]
gi|351641232|gb|EHA49095.1| RNA polymerase II transcription factor B subunit 2 [Magnaporthe
oryzae 70-15]
gi|440469172|gb|ELQ38293.1| RNA polymerase II transcription factor B subunit 2 [Magnaporthe
oryzae Y34]
gi|440481925|gb|ELQ62459.1| RNA polymerase II transcription factor B subunit 2 [Magnaporthe
oryzae P131]
Length = 490
Score = 120 bits (300), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 86/330 (26%), Positives = 161/330 (48%), Gaps = 68/330 (20%)
Query: 21 GITARLPT-----LEDLEAYAIGQWERFLLQLISSAQAERSI------NFCSSTMK---- 65
G+ + LP + L+ +A +W+ L +++S + S+ NF S ++
Sbjct: 125 GVPSSLPIPPQVDVAFLDKWARSRWDAILHYVVNSVEETDSMEPSKKYNFGGSKLQDTVK 184
Query: 66 --VFQRGLLIQRDKEAPRLTESGFQFLLMDTNAQLWYIVREYISNSQHDSMLAYERGINQ 123
+ Q GL+ +R E +T++GF FLL + NAQ+W ++ +++ + D+ R +
Sbjct: 185 TLLVQGGLVQRRSSERISITKTGFTFLLQEANAQVWTLLLQWLHSVNEDNT---NRAV-- 239
Query: 124 ADLISFLLELSFHVAGEAYNLKTLSEIQRSMIKDFADLGLVKLQQGRKESWFIPTIADS- 182
D++SFL L G+AY+ LSE +R+M+ D D GLV + + +F +A +
Sbjct: 240 -DMLSFLFMLGTLELGQAYDTGALSEERRNMLPDLNDFGLVYIPPSNPDQYFPTRLATTL 298
Query: 183 -------------------------------LETNFRMYAYSTSKLHCEILRLFSKIEYQ 211
LETNFR+YAY+++ L IL LF+ ++ +
Sbjct: 299 TSGSSALRSVSSGVAAATAEAGENNTKGAIILETNFRIYAYTSTPLQIAILALFANLKMR 358
Query: 212 LPNLIVGAITKESLYNAVENGLTAEQ------QNAHPRVADRI------PSVLENVCDQI 259
++ G +++ S+ A+ +G+TA+Q +AH ++ RI P + V DQI
Sbjct: 359 FAGMVTGQLSRHSIKRAISHGITADQIIEYLASHAHEQM-HRIAAIRNKPVLPPTVVDQI 417
Query: 260 RLWESDLNRVEMTPAHYYDEFPSREDSKKM 289
RLW+ + R+++ + + +F S+ + K +
Sbjct: 418 RLWQLETERMQVQRGYLFKDFESQAEFKAI 447
>gi|303321033|ref|XP_003070511.1| Transcription factor tfb2 family protein [Coccidioides posadasii
C735 delta SOWgp]
gi|240110207|gb|EER28366.1| Transcription factor tfb2 family protein [Coccidioides posadasii
C735 delta SOWgp]
gi|320036051|gb|EFW17991.1| TFIIH and nucleotide excision repair factor 3 complexes subunit
[Coccidioides posadasii str. Silveira]
Length = 487
Score = 120 bits (300), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 93/328 (28%), Positives = 156/328 (47%), Gaps = 74/328 (22%)
Query: 21 GITARLP-----TLEDLEAYAIGQWERFLLQLISSAQ---AERSINFCSSTMKVFQRGLL 72
G+ + +P T+ DL+ YA QWE L ++ + ++ + Q L
Sbjct: 122 GVMSSMPDPHPMTVSDLDDYARRQWEGVLGYMVGTNSLGIQRENVTLSKGVKSLLQACHL 181
Query: 73 IQ-RDKEAPRLTESGFQFLLMDTNAQLWYIVREYISNSQHDSMLAYERGINQADLISFLL 131
++ RD+ +T+ GF F+L D N Q+W+I+ Y+ N++ G++ +++SFL
Sbjct: 182 VEVRDRRV-EITKEGFAFVLQDVNTQVWHILILYVENAE-------AIGMDSVEVLSFLF 233
Query: 132 ELSFHVAGEAYNLKTLSEIQRSMIKDFADLGLVKLQQGRKESW-FIPT------IADSL- 183
LS G++Y+ K L+ Q + D D G+V ES F PT +DS+
Sbjct: 234 LLSSLELGQSYDKKHLTSTQLRTLADLTDFGIVYQHSPASESTRFYPTRLATTLTSDSMA 293
Query: 184 ------------------------------ETNFRMYAYSTSKLHCEILRLFSKIEYQLP 213
ETN+R+YAY++S L ++ LF+ ++Y+ P
Sbjct: 294 LSSPISGNLAPAGPNINAATGAPGTGFIIIETNYRLYAYTSSPLQISLIALFTTLKYRFP 353
Query: 214 NLIVGAITKESLYNAVENGLTAEQ------QNAHPRV------------ADRIPSVL-EN 254
NL+ G +T++S+ AVE G+TA+Q +AHP++ A SVL
Sbjct: 354 NLVTGKLTRQSIRRAVEMGITADQIISYLTTHAHPQMRKVNASKSTSTTAGLPASVLPPT 413
Query: 255 VCDQIRLWESDLNRVEMTPAHYYDEFPS 282
V DQIRLW+ + +R++ TP + +F S
Sbjct: 414 VVDQIRLWQLERDRLKATPGFLFKDFAS 441
>gi|449296697|gb|EMC92716.1| hypothetical protein BAUCODRAFT_259506 [Baudoinia compniacensis
UAMH 10762]
Length = 489
Score = 119 bits (297), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 85/291 (29%), Positives = 143/291 (49%), Gaps = 64/291 (21%)
Query: 32 LEAYAIGQWERFLLQLISSAQAE---RSINFCSSTMKVFQRGLLIQ-RDKEAPRLTESGF 87
L+A+A QWE L ++ SA A + + T ++ Q+G + R +EA +T+ GF
Sbjct: 142 LDAFARQQWEAILYYVVGSAHAGLGGSTDAISAGTKQLLQKGEFVSVRGREA-HITQRGF 200
Query: 88 QFLLMDTNAQLWYIVREY--ISNSQHDSMLAYERGINQADLISFLLELSFHVAGEAYNLK 145
FLL + NAQ+W ++ Y +S + H ++ D++SFL L G +Y+
Sbjct: 201 TFLLQEINAQIWTLLIVYLEVSGALH---------MDPVDVLSFLFTLGSLELGISYSTT 251
Query: 146 TLSEIQRSMIKDFADLGLVKLQQGRKESWFIPT------IADS----------------- 182
L+ Q+ M+ D +D GLV ++ E+ + PT +D+
Sbjct: 252 NLTPTQQQMLDDLSDFGLV-YRRSNDEARYYPTRLATTLTSDAPALPNTSLTSTTSTTTL 310
Query: 183 ------------------LETNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKES 224
LETN+R+YAY++S L IL LF+ ++ + PNLI +TK S
Sbjct: 311 ASSSTDPSASANEKGYIILETNYRLYAYTSSPLPITILSLFATLKTRYPNLITAKLTKSS 370
Query: 225 LYNAVENGLTAEQ------QNAHPRVADRIPSVLENVCDQIRLWESDLNRV 269
+ +A+ +G+T++Q +AHP + + P + V DQIRLW+ + R+
Sbjct: 371 IQSAIASGITSDQIITYLTTHAHPILRRQNPVLPPTVVDQIRLWQIEGERM 421
>gi|344303892|gb|EGW34141.1| RNA polymerase II transcription factor B subunit 2 [Spathaspora
passalidarum NRRL Y-27907]
Length = 519
Score = 118 bits (296), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 90/351 (25%), Positives = 161/351 (45%), Gaps = 104/351 (29%)
Query: 32 LEAYAIGQWERFLLQLISSAQAERSINFCSSTMKVFQRGLLIQ---RDKEAPRLTESGFQ 88
L+++A +WE L ++ + E + +S + + + G L++ R ++T +GFQ
Sbjct: 137 LDSFASSKWETILHFMVGT---ESTATPSNSVLSLLRLGGLMEGPGRGASNLKITNTGFQ 193
Query: 89 FLLMDTNAQLWYIVREYISNSQHDSMLAYERGINQADLISFLLELSFHVAGEAYNLKTLS 148
FLL D NAQ+W ++ +Y++ +Q E ++ D+++F+ L G++Y + +LS
Sbjct: 194 FLLQDVNAQIWTLLLQYLNLTQ-------ELNMDPVDVLNFIFVLGSLELGKSYAVSSLS 246
Query: 149 EIQRSMIKDFADLGLVKLQQGRKESWFIPT------IADS-------------------- 182
E Q SM+ D D GLV ++ S F PT +DS
Sbjct: 247 ETQVSMLADLKDYGLV-YRRTDTSSRFYPTRLATTLTSDSSALKTPAMAVEQALDSVEGG 305
Query: 183 -------------------LETNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKE 223
+ETNF++YAY+ S L IL LF + + N++ G IT+E
Sbjct: 306 TDNEVSQTAPPGNIQGTVIIETNFKLYAYTNSPLEIAILNLFVHLRTRFANMVCGQITRE 365
Query: 224 SLYNAVENGLTAEQ------QNAHPRV--------------------------------- 244
S+ NA+ NG+TA+Q +AHP++
Sbjct: 366 SIRNALYNGITADQIIRFLETHAHPQMKVLAKEKLDKKIEFDTSHNINTAGGAPQSQALR 425
Query: 245 AD------RIPSVLENVCDQIRLWESDLNRVEMTPAHYYDEFPSREDSKKM 289
AD ++ + NV DQI+LW+ +L+R++ + + +FP++++ K+
Sbjct: 426 ADGSVAQHKLEILPPNVVDQIKLWQLELDRIQTFDGYLFKDFPNQQEFDKL 476
>gi|146414792|ref|XP_001483366.1| hypothetical protein PGUG_04095 [Meyerozyma guilliermondii ATCC
6260]
Length = 498
Score = 117 bits (294), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 89/333 (26%), Positives = 158/333 (47%), Gaps = 85/333 (25%)
Query: 28 TLEDLEAYAIGQWERFLLQLISSAQAERSINFCSSTMKVFQRGLLIQ---RDKEAPRLTE 84
T+ L+++A+ +WE L ++ + + S + + + G L++ D ++T
Sbjct: 132 TVAFLDSFALQKWETILHYMVGTELPSKP---SPSVLSLLKLGGLMEGPGTDARNLKITN 188
Query: 85 SGFQFLLMDTNAQLWYIVREYISNSQHDSMLAYERGINQADLISFLLELSFHVAGEAYNL 144
SGFQFLL D NAQ+W ++ +Y++ +Q +M + D+++FL L G++Y L
Sbjct: 189 SGFQFLLQDMNAQIWTLLLQYLNLTQDLNM-------DPVDVLNFLFVLGSLELGKSYYL 241
Query: 145 KTLSEIQRSMIKDFADLGLVKLQQGRKESWF----------------IPTIA-------- 180
LS+ Q SM+ D D GLV + + ++ P++A
Sbjct: 242 SGLSDTQVSMLADLRDYGLVYQYSDQSDRFYPTRLATTLTSESASLKTPSMALDQAVDTS 301
Query: 181 ---DS--------LETNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKESLYNAV 229
DS LETNF++YAY+ S L IL LF + + N++ G IT+ES+ NA+
Sbjct: 302 NGLDSGPGQGSIILETNFKLYAYTNSPLEIAILNLFVNLRTRFSNMVSGQITRESIRNAL 361
Query: 230 ENGLTAEQ------QNAHPRV----ADRIPSVLE-------------------------- 253
NG+T++Q +AHP++ +R+ +E
Sbjct: 362 YNGITSDQIINFLETHAHPQMRALAKERLDKKVEFDASNNINTAGGGQNSSAQHKLEILP 421
Query: 254 -NVCDQIRLWESDLNRVEMTPAHYYDEFPSRED 285
V DQI+LW+ +L+R++ + + EF S+++
Sbjct: 422 PTVVDQIKLWQLELDRIQAFEGYLFKEFASQQE 454
>gi|425777809|gb|EKV15965.1| TFIIH and nucleotide excision repair factor 3 complexes subunit
(Tfb2), putative [Penicillium digitatum PHI26]
gi|425782577|gb|EKV20476.1| TFIIH and nucleotide excision repair factor 3 complexes subunit
(Tfb2), putative [Penicillium digitatum Pd1]
Length = 382
Score = 117 bits (293), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 98/356 (27%), Positives = 166/356 (46%), Gaps = 83/356 (23%)
Query: 26 LPTLEDLEAYAIGQWERFLLQLI--SSAQAER-SINFCSSTMKVFQRGLLIQRDKEAPRL 82
L ++ DL+ YA QWE + ++ S+ +R ++N ++ Q G L++ +
Sbjct: 34 LTSIADLDEYARRQWEGVMGYMVGTSALSGQRDAVNLSKGVKQLLQAGHLVEIRGNRVDI 93
Query: 83 TESGFQFLLMDTNAQLWYIVREYISNSQHDSMLAYERGINQADLISFLLELSFHVAGEAY 142
T+ GF F+L D N Q+W+I+ Y+ +++ G++ +++SFL LS G +Y
Sbjct: 94 TKDGFGFVLQDVNTQVWHILILYVESAE-------AIGMDSVEVLSFLFLLSSLELGSSY 146
Query: 143 NLKTLSEIQRSMIKDFADLGLVKLQQGRKESWFIPT------IADS-------------- 182
+ ++ Q + D AD G+V Q+ + F PT +DS
Sbjct: 147 DKSHMTSNQLRTLADLADFGIV-YQEDADATHFYPTRLATTLTSDSSALSNPVTGSLTGP 205
Query: 183 -------------LETNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKESLYNAV 229
+ETN+R+YAY++S L ++ LF+ ++Y+ PNL+ G IT++S+ A+
Sbjct: 206 VGPSGGSGSGFIIIETNYRLYAYTSSPLQISLISLFTNLKYRFPNLVTGKITRQSVRRAI 265
Query: 230 ENGLTAEQ------QNAHPRV---------ADRIP-SVL-ENVCDQIRLWESDLNRVEMT 272
E G+TA+Q +AHP++ IP SVL V DQIRLW+ + +R+ T
Sbjct: 266 EMGITADQIISYLLSHAHPQLRKHSAAQSNGKGIPASVLPPTVTDQIRLWQLERDRLRAT 325
Query: 273 PAHYYDEFPS-------------------REDSKKMRLVVNAEIHMHMREFLRGQN 309
+ +F S + D K+M V H + FLR Q
Sbjct: 326 AGFLFKDFTSLAEYQAPCQYAAEIGVLVWKSDRKRMFFVTR---HEQVAAFLRSQK 378
>gi|190347675|gb|EDK39997.2| hypothetical protein PGUG_04095 [Meyerozyma guilliermondii ATCC
6260]
Length = 498
Score = 117 bits (292), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 89/333 (26%), Positives = 157/333 (47%), Gaps = 85/333 (25%)
Query: 28 TLEDLEAYAIGQWERFLLQLISSAQAERSINFCSSTMKVFQRGLLIQ---RDKEAPRLTE 84
T+ L+++A +WE L ++ + + S + + + G L++ D ++T
Sbjct: 132 TVAFLDSFASQKWETILHYMVGTELPSKP---SPSVLSLLKSGGLMEGPGTDARNLKITN 188
Query: 85 SGFQFLLMDTNAQLWYIVREYISNSQHDSMLAYERGINQADLISFLLELSFHVAGEAYNL 144
SGFQFLL D NAQ+W ++ +Y++ +Q +M + D+++FL L G++Y L
Sbjct: 189 SGFQFLLQDMNAQIWTLLLQYLNLTQDLNM-------DPVDVLNFLFVLGSLELGKSYYL 241
Query: 145 KTLSEIQRSMIKDFADLGLVKLQQGRKESWF----------------IPTIA-------- 180
LS+ Q SM+ D D GLV + + ++ P++A
Sbjct: 242 SGLSDTQVSMLADLRDYGLVYQYSDQSDRFYPTRLATTLTSESASLKTPSMALDQAVDTS 301
Query: 181 ---DS--------LETNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKESLYNAV 229
DS LETNF++YAY+ S L IL LF + + N++ G IT+ES+ NA+
Sbjct: 302 NGLDSGPGQGSIILETNFKLYAYTNSPLEIAILNLFVNLRTRFSNMVSGQITRESIRNAL 361
Query: 230 ENGLTAEQ------QNAHPRV----ADRIPSVLE-------------------------- 253
NG+T++Q +AHP++ +R+ +E
Sbjct: 362 YNGITSDQIINFLETHAHPQMRALAKERLDKKVEFDASNNINTAGGGQNSSAQHKLEILP 421
Query: 254 -NVCDQIRLWESDLNRVEMTPAHYYDEFPSRED 285
V DQI+LW+ +L+R++ + + EF S+++
Sbjct: 422 PTVVDQIKLWQLELDRIQAFEGYLFKEFASQQE 454
>gi|430812024|emb|CCJ30551.1| unnamed protein product [Pneumocystis jirovecii]
Length = 319
Score = 116 bits (290), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 73/260 (28%), Positives = 133/260 (51%), Gaps = 17/260 (6%)
Query: 32 LEAYAIGQWERFLLQLISSAQAERSINFCSSTMKVFQRGLLIQRDKEAPRLTESGFQFLL 91
L+ YA +WE L ++ + + + + ++ GL+ + ++T SGFQFLL
Sbjct: 26 LDNYAKNKWEMILHFMVGTGTEKLPGDHVLNLLR--YSGLMFGSRCDEMKITNSGFQFLL 83
Query: 92 MDTNAQLWYIVREYISNSQHDSMLAYERGINQADLISFLLELSFHVAGEAYNLKTLSEIQ 151
++ N+Q+W ++ Y++ + + ++ D++ FL L G++Y + +L+ IQ
Sbjct: 84 LNINSQIWTLLLHYLN-------MIEDLEVDPVDILQFLFMLGNLELGQSYLISSLTPIQ 136
Query: 152 RSMIKDFADLGLVKLQQGRKESWFIPTIADSLETNFRMYAYSTSKLHCEILRLFSKIEYQ 211
++++ D G+V ++ + F PT ++ T+ S L +L LF + +
Sbjct: 137 IQVLENLKDYGIVYRRKSSRR--FYPTRLATILTSNSEILIRHSPLQIAVLNLFVHLYLR 194
Query: 212 LPNLIVGAITKESLYNAVENGLTAEQ------QNAHPRVADRIPSVLENVCDQIRLWESD 265
NL+VG IT+ S+ A NG+TAEQ AHP++ P + V DQIRLWE +
Sbjct: 195 FSNLVVGVITRNSVRQAFMNGITAEQIISYLTSYAHPQMKKNTPIIPPTVNDQIRLWEME 254
Query: 266 LNRVEMTPAHYYDEFPSRED 285
NR++ T + + +F S D
Sbjct: 255 RNRLKATEGYLFRDFNSNSD 274
>gi|384484453|gb|EIE76633.1| hypothetical protein RO3G_01337 [Rhizopus delemar RA 99-880]
Length = 284
Score = 115 bits (288), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 78/251 (31%), Positives = 123/251 (49%), Gaps = 69/251 (27%)
Query: 81 RLTESGFQFLLMDTNAQLWYIVREYISNSQHDSMLAYERGINQADLISFLLELSFHVAGE 140
++T GFQFLL D N Q+W + +Y+ + A+L S LEL GE
Sbjct: 12 QITNKGFQFLLQDVNTQVWAFLLQYL---------------DMAELGS--LEL-----GE 49
Query: 141 AYNLKTLSEIQRSMIKDFADLGLVKLQQGRKESWFIPT---------------------- 178
Y++ TL++ Q M++D D G+V Q+ + + PT
Sbjct: 50 NYSVDTLTQTQLQMLEDLRDYGIV-YQRKKHSKRYYPTRLATTLTSGKSALATVAGKYNH 108
Query: 179 ------IADS------------LETNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAI 220
I D+ LETN+++YAY+ S L +L LF +++ + N++ G I
Sbjct: 109 MMQETNIDDTTDTESVDQGFIILETNYKLYAYTDSPLQIAVLNLFVQLQSRFRNMVTGVI 168
Query: 221 TKESLYNAVENGLTAE------QQNAHPRVADRIPSVLENVCDQIRLWESDLNRVEMTPA 274
T++S+ NA+ G+TAE Q +AHP++ P + V DQIRLWE + NR++ TP+
Sbjct: 169 TRDSIRNALMKGITAEQIIYYLQSHAHPQMRKETPVLPLTVVDQIRLWEMERNRLKPTPS 228
Query: 275 HYYDEFPSRED 285
+ Y EF + D
Sbjct: 229 YLYHEFNVQAD 239
>gi|448527133|ref|XP_003869438.1| TFIIH and nucleotide excision repair factor 3 complex subunit
[Candida orthopsilosis Co 90-125]
gi|380353791|emb|CCG23303.1| TFIIH and nucleotide excision repair factor 3 complex subunit
[Candida orthopsilosis]
Length = 500
Score = 115 bits (288), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 77/283 (27%), Positives = 132/283 (46%), Gaps = 87/283 (30%)
Query: 82 LTESGFQFLLMDTNAQLWYIVREYISNSQHDSMLAYERGINQADLISFLLELSFHVAGEA 141
+T +GFQFLL D NAQ+W ++ +Y++ L E +N D+++F+ L G+
Sbjct: 182 ITNTGFQFLLQDANAQIWTLLLQYLN-------LTSELNMNPVDVLNFIFILGCLELGKG 234
Query: 142 YNLKTLSEIQRSMIKDFADLGLVKLQQGRKESWFIPT------IADS------------- 182
Y++ LSE Q SM+ D DLGLV Q+ + F PT +DS
Sbjct: 235 YSVSNLSETQVSMLADLKDLGLV-YQKSDTSNKFYPTRLATTLTSDSSALKTPSMAVQQA 293
Query: 183 ------------------LETNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKES 224
+ETNF++YAY+ S L IL LF +++ + N++ G IT+ES
Sbjct: 294 LEENEEQMMASNSRESIIIETNFKIYAYTNSPLEIAILNLFVQMKTRFSNMVCGQITRES 353
Query: 225 LYNAVENGLTAEQ------QNAHPRV---------------------------------- 244
+ NA+ NG+T++Q +AHP++
Sbjct: 354 IRNALYNGITSDQIIKFLETHAHPQMRALAKEKLDKKVEFDASHNINTAGGAPQSKTDGA 413
Query: 245 --ADRIPSVLENVCDQIRLWESDLNRVEMTPAHYYDEFPSRED 285
++ + NV DQI+LW+ +L+R++ + + +F ++++
Sbjct: 414 ISQHKLEVIPPNVVDQIKLWQLELDRIQTVEGYLFKDFANQQE 456
>gi|452839401|gb|EME41340.1| hypothetical protein DOTSEDRAFT_156149 [Dothistroma septosporum
NZE10]
Length = 497
Score = 115 bits (288), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 85/313 (27%), Positives = 140/313 (44%), Gaps = 61/313 (19%)
Query: 30 EDLEAYAIGQWERFLLQLISSAQAERS--INFCSSTMKVFQRG--LLIQRDKEAPRLTES 85
E L+ +A QWE L ++ SA S ++ T + Q+G + + + ++ +
Sbjct: 137 EYLDTFARRQWEAILYYVVGSANRALSGEVDISPGTKSLLQKGEFVNVMSGGKQRMISTT 196
Query: 86 GFQFLLMDTNAQLWYIVREYISNSQHDSMLAYERGINQADLISFLLELSFHVAGEAYNLK 145
GF FLL D NAQ+W ++ Y+ S M + +++SFL L G +Y+
Sbjct: 197 GFTFLLQDVNAQVWSLLIVYLEVSSSLRM-------DPVEVLSFLFTLGSLELGISYSTA 249
Query: 146 TLSEIQRSMIKDFADLGLVKLQQGRKESWFIPTIADSL---------------------- 183
L+ Q+ M+ D AD GL+ + ++ +A +L
Sbjct: 250 NLTPTQQQMLDDLADFGLIYRRTPDSHRYYPTRLATTLTSDAPALTNNSLMKTTVMTGDP 309
Query: 184 -----------------ETNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKESLY 226
ETN+R+YAY++S L IL LF+ + + PNLI ITK S
Sbjct: 310 STDLAASASDEKGFIILETNYRLYAYTSSPLLISILSLFASLNTRYPNLITAKITKASTQ 369
Query: 227 NAVENGLTAEQ------QNAHP-----RVADRIPSVLENVCDQIRLWESDLNRVEMTPAH 275
NA+ G+T++Q +AHP A+ P + V DQI+LW+ + R+E T +
Sbjct: 370 NAIAAGITSDQIIDYLTTHAHPVLRRQAAANDAPILPPTVVDQIKLWQMEGERMEATKGY 429
Query: 276 YYDEFPSREDSKK 288
+ S+E+ K
Sbjct: 430 LIRDIGSQEEYDK 442
>gi|346972761|gb|EGY16213.1| RNA polymerase II transcription factor B subunit 2 [Verticillium
dahliae VdLs.17]
Length = 476
Score = 115 bits (287), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 77/299 (25%), Positives = 144/299 (48%), Gaps = 53/299 (17%)
Query: 28 TLEDLEAYAIGQWERFLLQLISSAQAE--RSINFCSSTMKVFQRGLLIQRDKEAPRLTES 85
T+E +E +A +W+ L +++S S +S ++ G L++R + +T++
Sbjct: 138 TIESIEKHARQKWDAILHYIVNSVTPGFVDSGGPKNSVKELLLAGQLVKRQGGSTTITQA 197
Query: 86 GFQFLLMDTNAQLWYIVREYISNSQHDSMLAYERGINQADLISFLLELSFHVAGEAYNLK 145
GF FLL + NAQ+W ++ ++ + + D++SFL +LS E Y+ +
Sbjct: 198 GFTFLLQEENAQVWTLLLLWLDATDQQTA-------KHTDMLSFLFQLSILELDEVYDTE 250
Query: 146 TLSEIQRSMIKDFADLGLVKLQQGRKESWFIP--------------TIADSL-------- 183
LS+ ++ M+ D GLV + + +F+ T+ D +
Sbjct: 251 ALSKERQDMLPSLMDFGLVYIPSHKPFQYFVTPQARALTNVSTATRTLTDGMNALSQPQG 310
Query: 184 -----------ETNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKESLYNAVENG 232
ETN+R+YAY+TS+L +L LF + + P ++ G +T++S+ A++ G
Sbjct: 311 GPGDQTNGIIVETNYRVYAYTTSQLQIAVLSLFCHLSVKFPGMVSGRLTRQSVRQAIDFG 370
Query: 233 LTAEQ------QNAHPRV-----ADRIPSVLENVCDQIRLWESDLNRVEMTPAHYYDEF 280
+TA+Q +AH ++ AD P + V DQIRLW+ + R++ T + +F
Sbjct: 371 ITADQIISYLAAHAHEQMHRQAAADGKPVLPPTVVDQIRLWQLENERMKTTSGFLFRDF 429
>gi|302405781|ref|XP_003000727.1| RNA polymerase II transcription factor B subunit 2 [Verticillium
albo-atrum VaMs.102]
gi|261360684|gb|EEY23112.1| RNA polymerase II transcription factor B subunit 2 [Verticillium
albo-atrum VaMs.102]
Length = 476
Score = 115 bits (287), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 77/299 (25%), Positives = 144/299 (48%), Gaps = 53/299 (17%)
Query: 28 TLEDLEAYAIGQWERFLLQLISSAQAE--RSINFCSSTMKVFQRGLLIQRDKEAPRLTES 85
T+E +E +A +W+ L +++S S +S ++ G L++R + +T++
Sbjct: 138 TIESIEKHARQKWDAILHYIVNSVTPGFVDSGGPKNSVKELLLAGQLVKRQGGSTTITQA 197
Query: 86 GFQFLLMDTNAQLWYIVREYISNSQHDSMLAYERGINQADLISFLLELSFHVAGEAYNLK 145
GF FLL + NAQ+W ++ ++ + + D++SFL +LS E Y+ +
Sbjct: 198 GFTFLLQEENAQVWTLLLLWLDATDQQTA-------KHTDMLSFLFQLSILELDEVYDTE 250
Query: 146 TLSEIQRSMIKDFADLGLVKLQQGRKESWFIP--------------TIADSL-------- 183
LS+ ++ M+ D GLV + + +F+ T+ D +
Sbjct: 251 ALSKERQDMLPSLMDFGLVYIPSHKPFQYFVTPQARALTNVSTATRTLTDGMNALSQSQG 310
Query: 184 -----------ETNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKESLYNAVENG 232
ETN+R+YAY+TS+L +L LF + + P ++ G +T++S+ A++ G
Sbjct: 311 GPGDQTNGIIVETNYRVYAYTTSQLQIAVLSLFCHLSVKFPGMVSGRLTRQSVRQAIDFG 370
Query: 233 LTAEQ------QNAHPRV-----ADRIPSVLENVCDQIRLWESDLNRVEMTPAHYYDEF 280
+TA+Q +AH ++ AD P + V DQIRLW+ + R++ T + +F
Sbjct: 371 ITADQIISYLAAHAHEQMHRQAAADGKPVLPPTVVDQIRLWQLENERMKTTSGFLFRDF 429
>gi|378729002|gb|EHY55461.1| transcription initiation factor TFIIH subunit H4 [Exophiala
dermatitidis NIH/UT8656]
Length = 508
Score = 115 bits (287), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 89/337 (26%), Positives = 150/337 (44%), Gaps = 86/337 (25%)
Query: 28 TLEDLEAYAIGQWERFLLQLISSA---------QAERSINFCSSTMKVFQRGLLIQ---- 74
T+ L+ YA +WE L ++ S+ + + SI +++ + G LI+
Sbjct: 134 TIAQLDEYARQRWEGILGYMVGSSSILLESGTTENQASIQPSPGVIELLKAGHLIELTGT 193
Query: 75 -RDKEAPRLTESGFQFLLMDTNAQLWYIVREYISNSQHDSMLAYERGINQADLISFLLEL 133
+A ++T+ GF F+L D N Q+W ++ Y+ N++ M ++ D++SFL +
Sbjct: 194 YSRGQAAKITKEGFAFVLQDINTQIWALLFLYVDNAEVFEM-------DKVDVLSFLFFV 246
Query: 134 SFHVAGEAYNLKTLSEIQRSMIKDFADLGLVK---LQQGRKESWFIPT------------ 178
S G AY+ L E Q + D G+V L+ G +F PT
Sbjct: 247 SSLELGLAYSTAPLDETQSRCLSDLVSFGIVYQPLLEDGTPVDYFYPTRLATTLTSDSST 306
Query: 179 --------IADSL----------------------ETNFRMYAYSTSKLHCEILRLFSKI 208
+A SL ETN+R+YAY++S L +L LF +
Sbjct: 307 TLSATNTTLASSLSTKSAHSSSSSSAGAGKGFIIVETNYRLYAYTSSPLQIALLSLFVNL 366
Query: 209 EYQLPNLIVGAITKESLYNAVENGLTAEQ------QNAHP-----------RVADR---I 248
+ PNL+ G ++K S+ A++ G+TA+Q +AHP R AD +
Sbjct: 367 RSRHPNLVTGKMSKSSVQRAIQAGITADQIISYLTSHAHPQMRRHAQAEQARNADPNRVV 426
Query: 249 PSVLENVCDQIRLWESDLNRVEMTPAHYYDEFPSRED 285
P + + DQI LW+ + +R+ TP +FP++ D
Sbjct: 427 PILPATILDQIHLWQLERDRMTTTPGFLLKDFPNQAD 463
>gi|255936123|ref|XP_002559088.1| Pc13g06540 [Penicillium chrysogenum Wisconsin 54-1255]
gi|211583708|emb|CAP91723.1| Pc13g06540 [Penicillium chrysogenum Wisconsin 54-1255]
Length = 483
Score = 114 bits (286), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 97/356 (27%), Positives = 165/356 (46%), Gaps = 83/356 (23%)
Query: 26 LPTLEDLEAYAIGQWERFLLQLI--SSAQAERS-INFCSSTMKVFQRGLLIQRDKEAPRL 82
L ++ DL+ YA QWE + ++ S+ +R +N ++ Q G L++ +
Sbjct: 135 LTSITDLDEYARRQWEGVMGYMVGTSALSGQRDMVNLSKGVKQLLQAGHLVEIRGNRVDI 194
Query: 83 TESGFQFLLMDTNAQLWYIVREYISNSQHDSMLAYERGINQADLISFLLELSFHVAGEAY 142
T+ GF F+L D N Q+W+I+ Y+ +++ G++ +++SFL LS G +Y
Sbjct: 195 TKDGFGFVLQDVNTQVWHILILYVESAE-------AIGMDSVEVLSFLFLLSSLELGSSY 247
Query: 143 NLKTLSEIQRSMIKDFADLGLVKLQQGRKESWFIPT------IADS-------------- 182
+ ++ Q + D AD G+V Q+ + F PT +DS
Sbjct: 248 DKSHMTPNQLRTLMDLADFGIV-YQEHADATRFYPTRLATTLTSDSSALSNPVTGSLTGP 306
Query: 183 -------------LETNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKESLYNAV 229
+ETN+R+YAY++S L ++ LF+ ++Y+ PNL+ G IT++S+ A+
Sbjct: 307 AGPSGGSGSGFIIIETNYRLYAYTSSPLQISLISLFTNLKYRFPNLVTGKITRQSVRRAI 366
Query: 230 ENGLTAEQ------QNAHPRV---------ADRIP-SVL-ENVCDQIRLWESDLNRVEMT 272
E G+TA+Q +AHP++ +P SVL V DQIRLW+ + +R+ T
Sbjct: 367 EMGITADQIISYLLSHAHPQLRKHSAAQPNGKGVPASVLPPTVTDQIRLWQLERDRLRAT 426
Query: 273 PAHYYDEFPS-------------------REDSKKMRLVVNAEIHMHMREFLRGQN 309
+ +F S + D K+M V H + FLR Q
Sbjct: 427 AGFLFKDFTSLAEYQAPCQYAAEIGVLVWKSDRKRMFFVTR---HEQVAAFLRSQK 479
>gi|406604717|emb|CCH43852.1| RNA polymerase II transcription factor B subunit 2 [Wickerhamomyces
ciferrii]
Length = 488
Score = 114 bits (286), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 86/322 (26%), Positives = 154/322 (47%), Gaps = 73/322 (22%)
Query: 28 TLEDLEAYAIGQWERFLLQLISSAQAERSINFCSSTMKVFQRGLLIQRDKEAPRLTESGF 87
++E L+ YA +WE +L + + E+S + ++ + GL+ + + +T GF
Sbjct: 130 SVEFLDQYAANKWET-ILHFMVGTELEQSPSPGVLSL-LTHSGLMEGKSVKDMLITNEGF 187
Query: 88 QFLLMDTNAQLWYIVREYISNSQHDSMLAYERGINQADLISFLLELSFHVAGEAYNLKTL 147
QFLL D NAQLW ++ +Y+ +A ++ D+++F+ L G+ Y+L L
Sbjct: 188 QFLLQDVNAQLWTLLLQYLR-------MAESLQMDPVDVLNFIFMLGSLELGKDYSLSAL 240
Query: 148 SEIQRSMIKDFADLGLV----------------------------------KLQQGRKES 173
SE Q +M+ D D GL+ K+ + K+S
Sbjct: 241 SETQVNMLGDLRDYGLIYQRKSTSRRFYPTRLATTLTSDTTSLRSASSAMNKVIENAKDS 300
Query: 174 WFIPT-IADS----LETNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKESLYNA 228
+ PT I +S +ETNF++YAY+ S L IL LF ++ + NL+ G IT+ES+ A
Sbjct: 301 AYTPTNIENSGTIIIETNFKVYAYTNSPLQIAILNLFVHLKARFSNLVTGQITRESIRKA 360
Query: 229 VENGLTAEQ------QNAHPRV-------------------ADRIPSVLENVCDQIRLWE 263
+ +G+T+EQ +AHP++ ++I + + DQI+LW+
Sbjct: 361 LVSGITSEQIISYLESHAHPQLRRAAEEELNKKNGFESNNHGEKIQILQPTIADQIKLWQ 420
Query: 264 SDLNRVEMTPAHYYDEFPSRED 285
+L+R+ + + +F S ++
Sbjct: 421 LELDRIMSFDGYLFTDFSSDQE 442
>gi|294660113|ref|XP_002777731.1| DEHA2G23254p [Debaryomyces hansenii CBS767]
gi|218511847|sp|Q6BGW8.2|TFB2_DEBHA RecName: Full=RNA polymerase II transcription factor B subunit 2;
AltName: Full=RNA polymerase II transcription factor B
52 kDa subunit; AltName: Full=RNA polymerase II
transcription factor B p52 subunit
gi|199434471|emb|CAR66042.1| DEHA2G23254p [Debaryomyces hansenii CBS767]
Length = 515
Score = 114 bits (285), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 91/346 (26%), Positives = 158/346 (45%), Gaps = 103/346 (29%)
Query: 32 LEAYAIGQWERFLLQLISSAQAERSINFCSSTMKVFQRGLLIQ-RDKEAPRL--TESGFQ 88
L+++A+ +WE L ++ + E S+ +S + + + G L++ +K RL T SGFQ
Sbjct: 137 LDSFALQKWESILHFMVGT---ELSVTPSNSVLSLLKSGGLMEGTNKGGNRLNITNSGFQ 193
Query: 89 FLLMDTNAQLWYIVREYISNSQHDSMLAYERGINQADLISFLLELSFHVAGEAYNLKTLS 148
FLL D NAQ+W ++ +Y++ +Q +M + D+++F+ L G+ Y + +LS
Sbjct: 194 FLLQDINAQIWTLLLQYLNLTQDLNM-------DPVDVLNFIFILGSLELGKGYTVSSLS 246
Query: 149 EIQRSMIKDFADLGLVKLQQGRKESWFIPT------IADS-------------------- 182
E Q SM+ D D GL+ Q+ F PT +DS
Sbjct: 247 ETQISMLADLRDYGLI-YQRSENSERFYPTRLATTLTSDSAALKSPSMAMEQALESTTET 305
Query: 183 ----------------LETNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKESLY 226
LETNF++YAY+ S L IL LF ++ + N++ G IT+ES+
Sbjct: 306 EEQQNLASNSNQGTIILETNFKIYAYTNSPLEIAILNLFVHLKTRFSNMVCGQITRESIR 365
Query: 227 NAVENGLTAEQ------QNAHPRV----ADRIPSVLE----------------------- 253
NA+ NG+TA+Q +AH ++ +R+ +E
Sbjct: 366 NALYNGITADQIIKFLETHAHSQMKILAKERLDKKIEFDTSNNINTAGGAPQSQMMTNEN 425
Query: 254 --------------NVCDQIRLWESDLNRVEMTPAHYYDEFPSRED 285
V DQI+LW+ +L+R++ + + +F S+++
Sbjct: 426 GTTVAQHKLEVLPPTVVDQIKLWQLELDRIQTFEGYLFKDFASQQE 471
>gi|448103836|ref|XP_004200137.1| Piso0_002710 [Millerozyma farinosa CBS 7064]
gi|359381559|emb|CCE82018.1| Piso0_002710 [Millerozyma farinosa CBS 7064]
Length = 512
Score = 114 bits (284), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 85/347 (24%), Positives = 154/347 (44%), Gaps = 98/347 (28%)
Query: 32 LEAYAIGQWERFLLQLISSAQAERSINFCSSTMKVFQRGLLIQRDKEAP---RLTESGFQ 88
L+ +A +WE L ++ + E S+ S + + + G L++ + ++T GFQ
Sbjct: 137 LDMFASQKWESILHFMVGT---ELSVAPSKSVLSLLKSGGLMEGPGTSASNLKITNKGFQ 193
Query: 89 FLLMDTNAQLWYIVREYISNSQHDSMLAYERGINQADLISFLLELSFHVAGEAYNLKTLS 148
FLL D N Q+W ++ +Y+S +Q +M + D+++F+ L G++Y + +LS
Sbjct: 194 FLLQDVNVQIWTLLLQYLSLTQDLNM-------DPVDVLNFIFVLGCLELGKSYTVSSLS 246
Query: 149 EIQRSMIKDFADLGLVKLQQGRKESWFIPTIADS-------------------------- 182
E Q SM+ D D GL+ KE ++ +A +
Sbjct: 247 ETQISMLADLKDYGLIYQNHNDKERFYPTRLATTLTSEAAALRTPSMALNQVVDTANSEA 306
Query: 183 --------------LETNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKESLYNA 228
LETNF++YAY+ S L IL LF ++ + PN++ G IT+ES+ A
Sbjct: 307 TEEQMFSNTGGSIILETNFKIYAYTNSPLEIAILNLFVHLKTRFPNMVTGQITRESIRKA 366
Query: 229 VENGLTAEQ------QNAHPRVA----------------DRIPSVLEN------------ 254
+ NG+TA+Q +AH ++ + I + +N
Sbjct: 367 LFNGITADQIIKFLESHAHSQMKQMAKENLDKKIEFDANNNINTATDNQQLSVGEFGSAN 426
Query: 255 -----------VCDQIRLWESDLNRVEMTPAHYYDEFPSREDSKKMR 290
V DQI+LW+ +L+R++ + + +F S+++ +R
Sbjct: 427 SYHKLEVLPPTVVDQIKLWQLELDRIQTFEGYLFKDFSSQQEYDALR 473
>gi|336466164|gb|EGO54329.1| hypothetical protein NEUTE1DRAFT_87562 [Neurospora tetrasperma FGSC
2508]
gi|350286986|gb|EGZ68233.1| transcription factor Tfb2 [Neurospora tetrasperma FGSC 2509]
Length = 475
Score = 113 bits (283), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 90/379 (23%), Positives = 166/379 (43%), Gaps = 93/379 (24%)
Query: 21 GITARLPT-----LEDLEAYAIGQWERFLLQLISSAQAERSINFCS----STMKVFQRGL 71
G+ + LP + L+ YA +W+ L +++S S S S ++ G
Sbjct: 99 GVPSSLPVDPSIDIAYLDKYARKKWDDILHYVVNSLGVHGSSEGVSGPKASVKELLLAGR 158
Query: 72 LIQR---DKEAPRLTESGFQFLLMDTNAQLWYIVREYISNSQHDSMLAYERGINQADLIS 128
L++R + +T++GF FLL ++NAQ+W ++ ++ + H + + G++ D++S
Sbjct: 159 LVERRPDTRTGIGITQAGFTFLLQESNAQVWTLLLLWLEAADHTA----DSGMDSIDMLS 214
Query: 129 FLLELSFHVAGEAYNLKTLSEIQRSMIKDFADLGLVKLQQGRKE---------------- 172
FL LS G AY+ L+E +R+M+ D GL+ + ++
Sbjct: 215 FLFMLSSLELGTAYDTSALTETRRNMLPSLVDFGLIYFPRDTRQFFPTRLATTLTSTASA 274
Query: 173 -----SWFIPTIADS-----------------------------LETNFRMYAYSTSKLH 198
S F A+ +ETN+R+YAY+TS L
Sbjct: 275 LRTVSSAFTAATANPSGEPGTTTSTSGGPAATPDKTQTAAKGIIIETNYRIYAYTTSPLQ 334
Query: 199 CEILRLFSKIEYQLPNLIVGAITKESLYNAVENGLTAEQ------QNAHPRVADRI---- 248
+L LF ++ + PN++ G +T++S+ A+ G+TA+Q +AH ++
Sbjct: 335 IAVLALFCQLNMRFPNMVSGRLTRDSIRQAIGFGITADQIISYLHAHAHQQMVREATVTG 394
Query: 249 -PSVLENVCDQIRLWESDLNRVEMTPAHYYDEFPSREDSKKM----------------RL 291
P + V DQIRLW+ + R++ T + +F S E+ + R
Sbjct: 395 KPVLPPTVVDQIRLWQLENERMQTTAGFLFKDFESTEEYAALSRYAEEIGVLVWKNDKRQ 454
Query: 292 VVNAEIHMHMREFLRGQNK 310
+ A H +R++L+ + K
Sbjct: 455 LFFASKHEQLRDYLKSRKK 473
>gi|50310215|ref|XP_455127.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
gi|62901296|sp|Q6CLR2.1|TFB2_KLULA RecName: Full=RNA polymerase II transcription factor B subunit 2;
AltName: Full=RNA polymerase II transcription factor B
52 kDa subunit; AltName: Full=RNA polymerase II
transcription factor B p52 subunit
gi|49644263|emb|CAG97834.1| KLLA0F01056p [Kluyveromyces lactis]
Length = 496
Score = 113 bits (282), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 86/326 (26%), Positives = 145/326 (44%), Gaps = 82/326 (25%)
Query: 32 LEAYAIGQWERFLLQLISSAQAERSINFCSSTMKVFQR-GLLIQRDKEAPRLTESGFQFL 90
L+ Y+ +WE L ++ + + + Q GL+ + + ++T GFQFL
Sbjct: 137 LDQYSAEKWETILHYMVGTPNTNTP---GGKVLDLLQHSGLMEEAEYGELKITNQGFQFL 193
Query: 91 LMDTNAQLWYIVREYISNSQHDSMLAYERGINQADLISFLLELSFHVAGEAYNLKTLSEI 150
L D NAQ+W ++ +Y+ +A ++ D+++F+ L G+AY LS
Sbjct: 194 LQDVNAQMWTLLLQYLK-------MAESLQMDPVDVLNFIFMLGALQLGKAYKCDQLSNT 246
Query: 151 QRSMIKDFADLGLVKLQQGRKESWFIPTIA------------------------------ 180
QR+M++D D GL+ Q ++ +A
Sbjct: 247 QRTMLQDMRDYGLIYQNQSDYAKFYPTRLATLLTSDTKAFRSASVALDSVLNKANETTAV 306
Query: 181 --DS---------------LETNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKE 223
DS +ETNF++Y+YS S L IL LF ++ + N++ G +T+E
Sbjct: 307 EGDSGQDETTERTQDGALIIETNFKLYSYSNSPLQIAILSLFVHLKSRFANMVTGQLTRE 366
Query: 224 SLYNAVENGLTAEQ------QNAHPRV-----------ADRIPSVLE-------NVCDQI 259
S+ NA+ NG+TAEQ +AHPR+ + P+V E V DQI
Sbjct: 367 SVRNALLNGITAEQIIAYLETHAHPRMRRLAEENLSKKLELDPTVKETLQVLPPTVVDQI 426
Query: 260 RLWESDLNRVEMTPAHYYDEFPSRED 285
RLW+ +L+R+ + Y +F S ++
Sbjct: 427 RLWQLELDRIISYDGYLYTDFESYQE 452
>gi|164425579|ref|XP_960485.2| hypothetical protein NCU05523 [Neurospora crassa OR74A]
gi|157070982|gb|EAA31249.2| conserved hypothetical protein [Neurospora crassa OR74A]
Length = 475
Score = 113 bits (282), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 90/379 (23%), Positives = 166/379 (43%), Gaps = 93/379 (24%)
Query: 21 GITARLPT-----LEDLEAYAIGQWERFLLQLISSAQAERSINFCS----STMKVFQRGL 71
G+ + LP + L+ YA +W+ L +++S S S S ++ G
Sbjct: 99 GVPSSLPVDPSIDIAYLDRYARKKWDDILHYVVNSLGVHGSSEGVSGPKASVKELLLAGR 158
Query: 72 LIQR---DKEAPRLTESGFQFLLMDTNAQLWYIVREYISNSQHDSMLAYERGINQADLIS 128
L++R + +T++GF FLL ++NAQ+W ++ ++ + H + + G++ D++S
Sbjct: 159 LVERRPDTRTGIGITQAGFTFLLQESNAQVWTLLLLWLEAADHTA----DSGMDSIDMLS 214
Query: 129 FLLELSFHVAGEAYNLKTLSEIQRSMIKDFADLGLVKLQQGRKE---------------- 172
FL LS G AY+ L+E +R+M+ D GL+ + ++
Sbjct: 215 FLFMLSSLELGTAYDTSALTETRRNMLPSLVDFGLIYFPRDTRQFFPTRLATTLTSTASA 274
Query: 173 -----SWFIPTIADS-----------------------------LETNFRMYAYSTSKLH 198
S F A+ +ETN+R+YAY+TS L
Sbjct: 275 LRTVSSAFTAATANPSGEPGTTTSTSGGPAATPDKTQTAAKGIIIETNYRIYAYTTSPLQ 334
Query: 199 CEILRLFSKIEYQLPNLIVGAITKESLYNAVENGLTAEQ------QNAHPRVADRI---- 248
+L LF ++ + PN++ G +T++S+ A+ G+TA+Q +AH ++
Sbjct: 335 IAVLALFCQLNMRFPNMVSGRLTRDSIRQAIGFGITADQIISYLHAHAHQQMVREATVTG 394
Query: 249 -PSVLENVCDQIRLWESDLNRVEMTPAHYYDEFPSREDSKKM----------------RL 291
P + V DQIRLW+ + R++ T + +F S E+ + R
Sbjct: 395 KPVLPPTVVDQIRLWQLENERMQTTAGFLFKDFESTEEYAALSRYAEEIGVLVWKNDKRQ 454
Query: 292 VVNAEIHMHMREFLRGQNK 310
+ A H +R++L+ + K
Sbjct: 455 LFFASKHEQLRDYLKSRKK 473
>gi|448100135|ref|XP_004199281.1| Piso0_002710 [Millerozyma farinosa CBS 7064]
gi|359380703|emb|CCE82944.1| Piso0_002710 [Millerozyma farinosa CBS 7064]
Length = 509
Score = 112 bits (281), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 84/347 (24%), Positives = 151/347 (43%), Gaps = 98/347 (28%)
Query: 32 LEAYAIGQWERFLLQLISSAQAERSINFCSSTMKVFQRGLLIQRDKEAP---RLTESGFQ 88
L+ +A +WE L ++ + E S+ S + + + G L++ + ++T GFQ
Sbjct: 137 LDMFASQKWESILHFMVGT---ELSVAPSKSVLSLLKSGGLMEGPGTSASNLKITNKGFQ 193
Query: 89 FLLMDTNAQLWYIVREYISNSQHDSMLAYERGINQADLISFLLELSFHVAGEAYNLKTLS 148
FLL D N Q+W ++ +Y+S +Q +M + D+++F+ L G++Y + +LS
Sbjct: 194 FLLQDVNVQIWTLLLQYLSLTQDLNM-------DPVDVLNFIFVLGCLELGKSYTVSSLS 246
Query: 149 EIQRSMIKDFADLGLVKLQQGRKESWFIPTIADS-------------------------- 182
E Q SM+ D D GL+ KE ++ +A +
Sbjct: 247 ETQISMLADLKDYGLIYQNHNDKERFYPTRLATTLTSEAAALRTPSMALNQVVDTANSEA 306
Query: 183 --------------LETNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKESLYNA 228
LETNF++YAY+ S L IL LF ++ + PN++ G IT+ES+ A
Sbjct: 307 TEEQMFSNTGGSIILETNFKIYAYTNSPLEIAILNLFVHLKTRFPNMVTGQITRESIRKA 366
Query: 229 VENGLTAEQ------QNAHPRVADRIPSVLE----------------------------- 253
+ NG+TA+Q +AH ++ L+
Sbjct: 367 LFNGITADQIIKFLESHAHSQMKQMAKENLDKKIEFDANNNINTATDSQQLSVGEFGSAS 426
Query: 254 ----------NVCDQIRLWESDLNRVEMTPAHYYDEFPSREDSKKMR 290
V DQI+LW+ +L+R++ + + +F S+++ +R
Sbjct: 427 SYHKLEILPPTVVDQIKLWQLELDRIQTFEGYLFKDFSSQQEYDALR 473
>gi|345569654|gb|EGX52519.1| hypothetical protein AOL_s00043g13 [Arthrobotrys oligospora ATCC
24927]
Length = 452
Score = 112 bits (281), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 74/281 (26%), Positives = 138/281 (49%), Gaps = 38/281 (13%)
Query: 32 LEAYAIGQWERFLLQLISSAQAERSINFCSSTMKVFQRGLLIQRDKEAPR-LTESGFQFL 90
L+ YA QWE +L + + + S +++ G L+++++ + +T+ GF FL
Sbjct: 133 LDRYAAEQWES-ILHFMVGNETQSSQRPSEGVVRLLLHGKLMEQNRASGTVITQLGFSFL 191
Query: 91 LMDTNAQLWYIVREYISNSQHDSMLAYERGINQADLISFLLELSFHVAGEAYNLKTLSEI 150
L + N+Q+W ++ Y+ ++ M + D++ FL L G+ Y++K+L+
Sbjct: 192 LQEVNSQVWTLLLLYLDMAEQLRM-------DPVDILHFLFLLGSLELGQDYDMKSLTPT 244
Query: 151 QRSMIKDFADLGLVKLQQGRKESWFIPTIADSLETNFR-------MYAYST--------- 194
Q+ M++D D G+V ++ ++ +A L + R A +T
Sbjct: 245 QKGMLEDLRDYGIVYQRKSSSRRFYPTRLATGLTSEIRSLRSPAATLANATPGNDENGFL 304
Query: 195 -------SKLHCEILRLFSKIEYQLPNLIVGAITKESLYNAVENGLTAEQ------QNAH 241
S L +L LF+++ + PNL+ IT+ES+ A+ G+TAEQ NAH
Sbjct: 305 IIETNYHSPLQIAVLNLFARLISRFPNLVTARITRESIRQAIGKGITAEQIIDYMTANAH 364
Query: 242 PRVADRIPSVLENVCDQIRLWESDLNRVEMTPAHYYDEFPS 282
P++ P + V DQIRLW+ + R+++T + + EF +
Sbjct: 365 PQLRKNSPVLPPTVVDQIRLWQIEGERMKVTSGYLFKEFAT 405
>gi|46127843|ref|XP_388475.1| hypothetical protein FG08299.1 [Gibberella zeae PH-1]
gi|408390907|gb|EKJ70292.1| hypothetical protein FPSE_09509 [Fusarium pseudograminearum CS3096]
Length = 494
Score = 111 bits (277), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 90/347 (25%), Positives = 160/347 (46%), Gaps = 74/347 (21%)
Query: 7 LINGGALPREPMPSGITARLPT---LEDLEAYAIGQWERFLLQLISSA---QAERSINFC 60
L GG+ +PS T ++P ++ L+ YA +WE L ++SS A S
Sbjct: 114 LSGGGSHNSFGVPS--TLQIPPEIDIDFLDRYARKKWEDILHFVVSSVGYKSAGESSGPN 171
Query: 61 SSTMKVFQRGLLI-QRDKEAPRLTESGFQFLLMDTNAQLWYIVREYISNSQHDSMLAYER 119
S ++ G L+ +R A +T++GF FLL + NAQ+W ++ ++ + M
Sbjct: 172 KSVKELLVAGRLVDRRPSGAIGITQAGFTFLLQEANAQVWTLLLLWLEAMDVNKMA---- 227
Query: 120 GINQADLISFLLELSFHVAGEAYNLKTLSEIQRSMIKDFADLGLVKLQQGRKESWFIPTI 179
G+ D++SFL L+ G AY+ L+E +++M+ D GL+ + ++ +F +
Sbjct: 228 GLEATDMLSFLFVLASMELGRAYDTNALTEQRKNMLPSLVDFGLIYIPNHKRSMFFPTRL 287
Query: 180 ADSL-----------------------------------------------ETNFRMYAY 192
A +L ETN+R+YAY
Sbjct: 288 ATTLTSSSNSLRSISDGVAAATAAALQPGQSRAPGSSATGSSNEQRGSVIIETNYRIYAY 347
Query: 193 STSKLHCEILRLFSKIEYQLPNLIVGAITKESLYNAVENGLTAEQ------QNAHPRV-- 244
+ S L +L LF+K++ + P+++ G I+++S+ A+ G+TAEQ +AH ++
Sbjct: 348 TQSTLQIAVLALFTKLQMRFPDMVAGRISRQSIRQAINFGITAEQIISYLSAHAHDQMRR 407
Query: 245 ---ADRIPSVLENVCDQIRLWESDLNRVEMTPAHYYDEFPSREDSKK 288
+ P + V DQIRLW+ + R++ T + +F ED K+
Sbjct: 408 TASLNNKPVLPPTVVDQIRLWQLENERMKTTGGFLFKDF---EDHKE 451
>gi|193654859|ref|XP_001944632.1| PREDICTED: general transcription factor IIH subunit 4-like
[Acyrthosiphon pisum]
Length = 470
Score = 110 bits (276), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 77/293 (26%), Positives = 140/293 (47%), Gaps = 48/293 (16%)
Query: 29 LEDLEAYAIGQWERFLLQLISSAQAERSINFCSSTMKVF-QRGLLIQRDKEAPRLTESGF 87
++ L++YA +WE L ++ S S ++V GL+++ +P +T +G+
Sbjct: 153 IDILDSYAYERWECILYYMVGSKHK----GISSDAVRVLLNAGLMVRDTDNSPVITSTGY 208
Query: 88 QFLLMDTNAQLWYIVREYISNSQHDSMLAYERGINQADLISFLLELSFHVAGEAYNLKTL 147
QFLL+D Q+WY + Y+ + RG++ A + FL ++ G Y +
Sbjct: 209 QFLLLDMATQVWYFMLHYMETVE-------SRGLDLAQYLIFLFQIHLSTLGWDYITDGM 261
Query: 148 SEIQRSMIKDFADLGLV---KLQQGRKESWFIPT--IAD-------------------SL 183
E ++ ++ + GLV KL+ GR F PT + + +
Sbjct: 262 PENLQTFLQHLQEFGLVYQRKLKAGR----FCPTRLVIEMGRENSHTSKRMKKKERYIVV 317
Query: 184 ETNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKESLYNAVENGLTAEQ------ 237
ETNFR+YA + S L ++ LF+ + Y+ PN+ G +T++S+ A+ NG+TA Q
Sbjct: 318 ETNFRIYAMTDSDLKVALVALFTHMLYRFPNMSAGILTRDSVQTALRNGITAAQIVRFLT 377
Query: 238 QNAHPRVADRIPSVLENVCDQIRLWESDLNRVEMTPAHYYDEFPSREDSKKMR 290
+ HP++ + + + V DQI LWE + NR+ Y + + D + ++
Sbjct: 378 VHTHPQMQE--CGMPQTVIDQIYLWEYERNRLTYRDGVLYSDINTPNDYEAIK 428
>gi|342884444|gb|EGU84659.1| hypothetical protein FOXB_04847 [Fusarium oxysporum Fo5176]
Length = 496
Score = 110 bits (274), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 81/321 (25%), Positives = 146/321 (45%), Gaps = 69/321 (21%)
Query: 32 LEAYAIGQWERFLLQLISSA---QAERSINFCSSTMKVFQRGLLIQRDKEAP-RLTESGF 87
L+ YA +WE L ++SS A S S ++ G L+ R +T++GF
Sbjct: 142 LDRYARKKWEDILHFVVSSVGYKSAGESSGPNKSVKELLVAGRLVDRKASGSVGITQAGF 201
Query: 88 QFLLMDTNAQLWYIVREYISNSQHDSMLAYERGINQADLISFLLELSFHVAGEAYNLKTL 147
FLL + NAQ+W ++ ++ + + M G+ D++SFL L+ G AY+ L
Sbjct: 202 TFLLQEANAQVWTLLLLWLEAMEVNKMA----GLEATDMLSFLFVLASMELGRAYDTNAL 257
Query: 148 SEIQRSMIKDFADLGLVKLQQGRKESWFIPTIADSL------------------------ 183
+E +++M+ D GL+ + ++ +F +A +L
Sbjct: 258 TEQRKNMLPSLVDFGLIYIPNHKRSMFFPTRLATTLTSSSNSLRSISDGVAAATAAALQP 317
Query: 184 -----------------------ETNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAI 220
ETN+R+YAY+ S L +L LF+K+ + P+++ G I
Sbjct: 318 GQSGAPGGSVTAANTEQRGSVIIETNYRIYAYTQSTLQIAVLALFTKLAMRFPDMVAGRI 377
Query: 221 TKESLYNAVENGLTAEQ------QNAHPRV-----ADRIPSVLENVCDQIRLWESDLNRV 269
+++S+ A++ G+TAEQ +AH ++ + P + V DQIRLW+ + R+
Sbjct: 378 SRQSIRQAIQFGITAEQIISYLSAHAHDQMHRTAALNNKPVLPPTVVDQIRLWQLENERM 437
Query: 270 EMTPAHYYDEFPSREDSKKMR 290
+ T + F ED ++ +
Sbjct: 438 KTTSGFLFKSF---EDDREYK 455
>gi|453082965|gb|EMF11011.1| RNA polymerase II transcription factor B subunit 2 [Mycosphaerella
populorum SO2202]
Length = 507
Score = 110 bits (274), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 85/319 (26%), Positives = 143/319 (44%), Gaps = 68/319 (21%)
Query: 28 TLEDLEAYAIGQWERFLLQLISSAQAERS--INFCSSTMKVFQRG--LLIQRDKEAPRLT 83
T++ L+ +A QWE L ++ SA A ++ S T + + G ++++ +T
Sbjct: 135 TVDYLDTFARTQWEAILYYVVGSASAGLGGGVDISSGTRTLLETGKFVVVKGGGRHRAIT 194
Query: 84 ESGFQFLLMDTNAQLWYIVREYISNS----QHDSMLAYERGINQADLISFLLELSFHVAG 139
GF FLL D NAQ+W ++ Y+ S Q DS+ D++SFL L G
Sbjct: 195 TDGFTFLLQDVNAQVWSLLIVYLEVSGDLLQMDSV----------DVLSFLFTLGSLELG 244
Query: 140 EAYNLKTLSEIQRSMIKDFADLGLVKLQQGRKESWFIPTIADSL---------------- 183
+Y+ L+ Q M+ D + GLV + + ++ +A +L
Sbjct: 245 VSYSTSNLTPTQLQMLDDLTNFGLVYRRSPSSDRYYPTRLATTLTSDAPALPNNSFTTTT 304
Query: 184 -----------------------ETNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAI 220
ETN+R+YAY++S L IL LF+ + + PNLI I
Sbjct: 305 TTNQNADPNDPAATASEKGYIILETNYRLYAYTSSPLPISILSLFASLNTRYPNLITAKI 364
Query: 221 TKESLYNAVENGLTAE------QQNAHP-----RVADRIPSVLENVCDQIRLWESDLNRV 269
TK S++ A+ +G+T++ Q +AHP + P + V DQIRLW+ + R+
Sbjct: 365 TKTSIHTAIASGITSDQIISYLQTHAHPILRRQAALNSAPILPPTVVDQIRLWQIEGERM 424
Query: 270 EMTPAHYYDEFPSREDSKK 288
+ T + + + +D K
Sbjct: 425 KSTKGYLIRDVGTEDDYTK 443
>gi|366997767|ref|XP_003683620.1| hypothetical protein TPHA_0A01010 [Tetrapisispora phaffii CBS 4417]
gi|357521915|emb|CCE61186.1| hypothetical protein TPHA_0A01010 [Tetrapisispora phaffii CBS 4417]
Length = 504
Score = 109 bits (273), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 76/282 (26%), Positives = 127/282 (45%), Gaps = 85/282 (30%)
Query: 81 RLTESGFQFLLMDTNAQLWYIVREYISNSQHDSMLAYERGINQADLISFLLELSFHVAGE 140
++T GFQFLL D N+Q+W ++ +Y+ +A +N D+++F+ L G+
Sbjct: 185 KITNDGFQFLLQDVNSQIWTLLLQYLK-------IAEALHMNPVDILNFIFMLGSLEFGK 237
Query: 141 AYNLKTLSEIQRSMIKDFADLGLVKLQQGRKESWFIPTI------------------ADS 182
AY+++ LS+ Q+ M+KD D GL+ Q+ + F PT DS
Sbjct: 238 AYSVEGLSDTQKKMLKDMRDYGLI-FQKTSNATVFYPTTLATQLTSDSSTVRSASGAIDS 296
Query: 183 L-----------------------------------ETNFRMYAYSTSKLHCEILRLFSK 207
L ETNF++Y+YS S L IL LF
Sbjct: 297 LLSQTKEANNNDSQNLGTDTDDLVGNQSVEVGALVVETNFKLYSYSNSPLQIAILSLFVH 356
Query: 208 IEYQLPNLIVGAITKESLYNAVENGLTAE------QQNAHPRV----------------- 244
+ + N++ G IT+ES+ NA+ NG+TA+ Q +AHP++
Sbjct: 357 LRTRFSNMVTGQITRESIRNALANGVTADQIIAYLQSHAHPQMRRLAETTLKKKLELDPN 416
Query: 245 -ADRIPSVLENVCDQIRLWESDLNRVEMTPAHYYDEFPSRED 285
D++ + V DQI+LW+ +L+R+ Y +F + ++
Sbjct: 417 TKDQLQILPPTVVDQIKLWQLELDRILSYDGSLYSDFDNNQE 458
>gi|401887601|gb|EJT51582.1| hypothetical protein A1Q1_07170 [Trichosporon asahii var. asahii
CBS 2479]
gi|406699646|gb|EKD02845.1| hypothetical protein A1Q2_02789 [Trichosporon asahii var. asahii
CBS 8904]
Length = 451
Score = 109 bits (272), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 89/304 (29%), Positives = 140/304 (46%), Gaps = 55/304 (18%)
Query: 27 PTLEDLEAYAIGQWERFLLQLISSAQAERSINFCSSTMK--VFQRGLLIQRDKEAPR--- 81
PT E+L Y WE L ++SS R +++ + GL++ + + R
Sbjct: 103 PTAEELIDYGENTWESILKYMVSSGLGARVTGRPRNSVLSLLHASGLMVDQFDDTGRNPN 162
Query: 82 -----LTESGFQFLLMDTNAQLWYIVREYISNSQHDSMLAYERGINQADLISFLLELSFH 136
+T GFQFLL D QLW I+ Y++ Q RG AD++S L
Sbjct: 163 YDRLTITSQGFQFLLEDRQTQLWQILMFYLARKQ-------RRGEAAADILSLFFSLGCM 215
Query: 137 VAGEAYN----LKTLSEIQRSMIKDFADLGLVKLQQ---GRKESWFIPT----------- 178
G+ Y+ + + Q+ + D G + +Q GRK F PT
Sbjct: 216 QLGQDYSASKSFQNFPQGQQCL-DDLEQYGFIYRRQEVDGRKTDQFFPTHLATSLCSGDT 274
Query: 179 ------IADS-----LETNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKESLYN 227
AD LETN+R+YAY++++L IL LF I + PNLIVG + + +
Sbjct: 275 SVNRSATADDKRFLILETNYRVYAYTSNELEIAILNLFVNITIRYPNLIVGHLDRRHVKA 334
Query: 228 AVENGLTAEQ------QNAHPRVADRIPSVLE-NVCDQIRLWESDLNRVEMTPAHYYDEF 280
A++ G++A Q +AHP++ + P +L +V DQ+ LW+ + NRV+ + EF
Sbjct: 335 AMDKGISAYQIISYLTTHAHPQMYNHPPPLLHPSVTDQLHLWDRERNRVQAQDTVMF-EF 393
Query: 281 PSRE 284
S+E
Sbjct: 394 YSKE 397
>gi|150863860|ref|XP_001382481.2| RNA polymerase II transcription factor B subunit 2 (RNA polymerase
II transcription factor B p52 subunit) (RNA polymerase
II transcription factor B 52 kDa subunit)
[Scheffersomyces stipitis CBS 6054]
gi|149385116|gb|ABN64452.2| RNA polymerase II transcription factor B subunit 2 (RNA polymerase
II transcription factor B p52 subunit) (RNA polymerase
II transcription factor B 52 kDa subunit)
[Scheffersomyces stipitis CBS 6054]
Length = 515
Score = 108 bits (271), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 84/343 (24%), Positives = 156/343 (45%), Gaps = 100/343 (29%)
Query: 32 LEAYAIGQWERFLLQLISSAQAERSINFCSSTMKVFQRGLLIQRDKEAP---RLTESGFQ 88
L+ +A +WE L ++ + E + +S + + + G L++ +P ++T +GFQ
Sbjct: 137 LDNFASSKWETILHFMVGT---EATATPTTSVLSLLKSGGLMEGPGNSPQNLKITNTGFQ 193
Query: 89 FLLMDTNAQLWYIVREYISNSQHDSMLAYERGINQADLISFLLELSFHVAGEAYNLKTLS 148
FLL D NAQ+W ++ +Y++ +Q E ++ D+++F+ L G++Y + +LS
Sbjct: 194 FLLQDVNAQIWTLLLQYLNLTQ-------ELHMDPVDVLNFIFVLGSLELGKSYLVSSLS 246
Query: 149 EIQRSMIKDFADLGLVKLQQGRKESWFIPT------IADS-------------------- 182
Q SM+ D D GLV Q+ F PT +DS
Sbjct: 247 ATQVSMLADLRDYGLV-YQRTDSSGRFYPTRLATTLTSDSAALKTPSMAIEQALGASDGG 305
Query: 183 ----------------LETNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKESLY 226
+ETNF++YAY+ S L IL LF ++ + N++ G IT+ES+
Sbjct: 306 EEQQIDTPTGNQGTVIIETNFKLYAYTNSPLEIAILNLFVHLKSRFTNMVCGQITRESIR 365
Query: 227 NAVENGLTAEQ------QNAHPRV----ADRIPSVLE----------------------- 253
+A+ NG+TA+Q +AHP++ +++ +E
Sbjct: 366 SALYNGITADQIIKFLETHAHPQMKLLAKEKLDKKIEFDTSHNINTAGGAPQSKVSGEGN 425
Query: 254 -----------NVCDQIRLWESDLNRVEMTPAHYYDEFPSRED 285
V DQI+LW+ +L+R++ + + +F ++++
Sbjct: 426 VAQHKLEILPPTVVDQIKLWQLELDRIQTFDGYLFKDFSNQQE 468
>gi|223993063|ref|XP_002286215.1| transcription factor of TFIIH family [Thalassiosira pseudonana
CCMP1335]
gi|220977530|gb|EED95856.1| transcription factor of TFIIH family [Thalassiosira pseudonana
CCMP1335]
Length = 461
Score = 108 bits (271), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 88/300 (29%), Positives = 143/300 (47%), Gaps = 64/300 (21%)
Query: 31 DLEAYAIGQWERFLLQLISSAQAERSINFC-----SSTMKVFQRGLLIQRDKE------- 78
DLE Y W+ L L+ S + +R + + ++ R L+Q D +
Sbjct: 138 DLETYTQSSWDSVLHFLVGSDETDRGSGYGIEEPPEAMVQFLMRIGLMQVDPDFKGNDKS 197
Query: 79 -AP-RLTESGFQFLLMDTNAQLWYIVREYISNSQHDSMLAYERGINQADLISFLLELSFH 136
AP +T G++F+L DTNAQ+W V +Y+++ H ++ + + +SFL+ L
Sbjct: 198 RAPLVITSKGYEFMLRDTNAQVWQFVLQYLNSMAHHE----QKDFIRMEALSFLICLGSC 253
Query: 137 VAGEAYNLKTL-SEIQRSMIKDFADLGLVKLQQGRKESWFIPT----------------- 178
GE Y L S+ R++++DF+ GL+ + + ++ F PT
Sbjct: 254 RVGEGYQSSVLGSKSARALMRDFSRFGLLFVCRVAGKNSFYPTRAAVNLVASSEKAGRQA 313
Query: 179 -----------------IADSLETNFRMYAYSTSKLHCEILRLFSKIEY--QLPNLIVGA 219
+A ++TNF++ AY+ SKLH L LF + +LPN+I
Sbjct: 314 SDLMGQTLAAPVPSRSHLAVVVQTNFQVVAYTKSKLHISTLGLFCDVSSFRRLPNVIFFH 373
Query: 220 ITKESLYNAVENGLTAEQ------QNAHP--RVADRIPSVLENVCDQIRLWESDLNRVEM 271
IT++S+ +A G+TA+Q +AHP R DR P V NV DQI LW+ + +RV M
Sbjct: 374 ITRDSIRSAFRLGVTADQILRFLHVHAHPMLRSGDR-PMVPSNVVDQILLWDRERHRVVM 432
>gi|344229873|gb|EGV61758.1| transcription factor Tfb2 [Candida tenuis ATCC 10573]
Length = 498
Score = 108 bits (269), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 87/339 (25%), Positives = 153/339 (45%), Gaps = 88/339 (25%)
Query: 29 LEDLEAYAIGQWERFLLQLISSAQAERSINFCSSTMKVFQRGLLIQRDKEAP---RLTES 85
L+ L+ +A +WE L ++ + E S S +++ + G L++ + + ++T
Sbjct: 134 LKFLDTFASTKWETILHYMVGT---ELSSTPSRSVLRLLKSGGLMEGNSDYAQELKITNK 190
Query: 86 GFQFLLMDTNAQLWYIVREYISNSQHDSMLAYERGINQADLISFLLELSFHVAGEAYNLK 145
GFQFLL D NAQ+W + L E ++ D+++F+ L G++Y++
Sbjct: 191 GFQFLLQDINAQIW-------TLLLQYLDLTLELQMDAVDVLNFIFLLGSLELGKSYSVS 243
Query: 146 TLSEIQRSMIKDFADLGLVKLQQGRKESWFIPT------IADS----------------- 182
LS+ Q M+ D D GLV Q+ + F PT +DS
Sbjct: 244 ALSDTQIEMLSDLRDFGLV-YQRSATSNKFYPTRLATTLTSDSNSLQTPSMAIDKANSGI 302
Query: 183 -------------LETNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKESLYNAV 229
+ETNF++Y+Y+ S L IL LF + + N++ G IT+ES+ NA+
Sbjct: 303 DSTDSKQRQESIIIETNFKVYSYTQSPLEIAILNLFVHLRTRFANMVTGQITRESIRNAL 362
Query: 230 ENGLTAEQ------QNAHPRVA----DRIPSVLE-------------------------- 253
NG+TA Q +AHP++ +++ +E
Sbjct: 363 YNGITAGQVIKFLETHAHPQMKMLAQEKLDKKIEFDASNNINTATGKSTDAPMQHKLEIL 422
Query: 254 --NVCDQIRLWESDLNRVEMTPAHYYDEFPSREDSKKMR 290
NV DQI+LW+ +L+R++ + + EF ++ D + +R
Sbjct: 423 PPNVVDQIKLWQLELDRIQTFDGYLFREFNNQIDYESLR 461
>gi|260945437|ref|XP_002617016.1| hypothetical protein CLUG_02460 [Clavispora lusitaniae ATCC 42720]
gi|238848870|gb|EEQ38334.1| hypothetical protein CLUG_02460 [Clavispora lusitaniae ATCC 42720]
Length = 511
Score = 107 bits (268), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 92/381 (24%), Positives = 160/381 (41%), Gaps = 119/381 (31%)
Query: 32 LEAYAIGQWERFLLQLISSAQAERSINFCSSTMKVFQRGLLIQRDKEAP---RLTESGFQ 88
L+ +A +WE L ++ + E S + + + G L++ + ++T SGFQ
Sbjct: 136 LDQFASQKWETILHFMVGT---ELPTVPSKSVLSLLKSGGLMEGHGTSAYSLKITNSGFQ 192
Query: 89 FLLMDTNAQLWYIVREYISNSQHDSMLAYERGINQADLISFLLELSFHVAGEAYNLKTLS 148
FLL D N Q+W ++ EY++ +Q E ++ D+++F+ L G+AY + +LS
Sbjct: 193 FLLQDVNVQIWTLLLEYLNLTQ-------ELNMDPVDVLNFIFILGSLELGKAYAVSSLS 245
Query: 149 EIQRSMIKDFADLGLVKLQQGRKESWFIPT-IADS------------------------- 182
+ Q SM+ D D GLV Q+ + F PT +A +
Sbjct: 246 DTQLSMLPDLRDYGLV-YQRSENSTRFFPTRLATTLTSESTGLKTPSMALNQTLEDPGAK 304
Query: 183 ------------------LETNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKES 224
LETNF++YAY+ S L IL LF ++ + N+++G IT+ES
Sbjct: 305 DQEHVTSEAGESQSGQIILETNFKLYAYTNSPLEIAILNLFVNLKVRFANMVIGQITRES 364
Query: 225 LYNAVENGLTAEQ------QNAHPRV---------------------------------- 244
+ A+ NG+TA+Q +AH ++
Sbjct: 365 IRKALYNGITADQIIKFLETHAHSQMRTSAKEKLDKKIEFDASHNINTAGGAPQSKSSDS 424
Query: 245 ---ADRIPSVLENVCDQIRLWESDLNRVEMTPAHYYDEFPSR------------------ 283
R+ + NV DQI+LW+ +L+R++ + + +F ++
Sbjct: 425 GVAQHRLEILPPNVVDQIKLWQLELDRIQTFEGYLFKDFKNQNEYDVLCNYATEVGVLLW 484
Query: 284 EDSKKMRLVVNAEIHMHMREF 304
D K+R V AE + +F
Sbjct: 485 SDKTKLRFFVTAEGMHQVADF 505
>gi|326435722|gb|EGD81292.1| hypothetical protein PTSG_11329 [Salpingoeca sp. ATCC 50818]
Length = 545
Score = 107 bits (268), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 75/280 (26%), Positives = 135/280 (48%), Gaps = 41/280 (14%)
Query: 32 LEAYAIGQWERFLLQLISSAQAERSINFCSSTMKVFQRGLLIQR-DKEAPRLTESGFQFL 90
L+ YA +WE L ++ S E + ++Q L+ R D + ++ GFQFL
Sbjct: 135 LQQYADEKWEDVLDYMVGSDSLEED----TVKQALYQSHLMTWREDVQDFDISSLGFQFL 190
Query: 91 LMDTNAQLWYIVREYISNSQHDSMLAYERGINQADLISFLLELSFHVAGEAYNLKTLSEI 150
L D QLW+ V +++ Q++ GI+ D + F+ +++ G Y + L++
Sbjct: 191 LQDRRTQLWFYVIKFLQTCQNE-------GIDIEDALGFVFRVAYTTFGNYYPTEVLNKT 243
Query: 151 QRSMIKDFADLGLVKLQQGRKESWFIPTIADSL-------------------ETNFRMYA 191
+ +++ F+ +GL ++ + + ++ +A +L ETNFR+YA
Sbjct: 244 EHLVLRHFSKIGLCYHRKKKSKQYYPTRLALALRTSSALVAKDAMRCGFLVIETNFRIYA 303
Query: 192 YSTSKLHCEILRLFSKIEYQLPNLIVGAITKESLYNAVENGLTAEQ------QNAHPRVA 245
Y+ S L +L+LF+K Y+LP ++V +IT+ S+ A+ G+TA Q + R+
Sbjct: 304 YTKSDLKISLLKLFAKPLYKLPTMLVASITRSSVRQAMAQGITARQILHFLKVHCSSRMR 363
Query: 246 DRIPSVLE----NVCDQIRLWESDLNRVEMTPAHYYDEFP 281
+ SV V DQI LWE + +R+ T + P
Sbjct: 364 HQPHSVFSPVPPTVSDQILLWEQETSRLSKTEGVLFRHLP 403
>gi|308452336|ref|XP_003089005.1| hypothetical protein CRE_21072 [Caenorhabditis remanei]
gi|308243592|gb|EFO87544.1| hypothetical protein CRE_21072 [Caenorhabditis remanei]
Length = 468
Score = 107 bits (266), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 84/332 (25%), Positives = 162/332 (48%), Gaps = 64/332 (19%)
Query: 30 EDLEAYAIGQWERFLLQLISSAQAERSINFCSSTMKVFQRGLLIQRDKEAPRLTESGFQF 89
+++E A+ +W+ +L+ ++ E + +T +F++ D +T SGFQF
Sbjct: 136 KEVEKKAVERWD-CILRYLALPSEENTQAVSETTRNLFKKANFTSGDSRI-EITTSGFQF 193
Query: 90 LLMDTNAQLWYIVREYISNSQHDSMLAYERGINQADLISFLLEL------SFHVAGEAYN 143
LL+ Q+W V EY+ L +G + ++I L+++ F E Y
Sbjct: 194 LLLSPVKQMWTYVIEYLK-------LEMSQGQDIVEVIEPLIQIVLLANRGFKAEKECYQ 246
Query: 144 LK-TLSEIQRSMIKDFADLGLVKLQQGRKESWFIP----------TIADS---------- 182
+ + S Q+ ++ +LG++ +++ + +F+ TI D+
Sbjct: 247 IDPSWSIPQQELLNHLRELGVIFIRKRKDGVFFLTHLLTHLATNETIDDTSAERVSNGKV 306
Query: 183 -LETNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKESLYNAVENGLTAEQ---- 237
+ETNFR+YAY++S L I+ LF+++ Y+ ++ VG IT+ES+ A+++G+TA Q
Sbjct: 307 IVETNFRVYAYTSSLLQLAIIALFTEMTYRFQDMSVGMITRESVRGALQHGITAAQIISF 366
Query: 238 --QNAHPR---VADRIPSVLENVCDQIRLWESDLNRVEMTPAHYYDEFPSRED------- 285
NAHP+ + I + V DQIRLWE + R+++ A+ Y F S ++
Sbjct: 367 LRANAHPQCIATSGAINCLPITVADQIRLWEDERRRMDLKDAYIYSHFESEDEFQGVCDY 426
Query: 286 -----------SKKMRLVVNAEIHMHMREFLR 306
+++ ++VN E H ++R++ +
Sbjct: 427 AQERGILLWANAQQKLVIVNEEGHEYVRQWYK 458
>gi|320581720|gb|EFW95939.1| TFIIH basal transcription factor complex subunit 2 [Ogataea
parapolymorpha DL-1]
Length = 544
Score = 107 bits (266), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 73/272 (26%), Positives = 127/272 (46%), Gaps = 71/272 (26%)
Query: 82 LTESGFQFLLMDTNAQLWYIVREYISNSQHDSMLAYERGINQADLISFLLELSFHVAGEA 141
+T++GFQFLL D N+Q+W ++ +Y+ S+ M N ++++F+ L G+
Sbjct: 238 ITQNGFQFLLQDINSQIWTLLLQYLKMSEKLMM-------NPVEVLNFIFMLGSLELGQG 290
Query: 142 YNLKTLSEIQRSMIKDFADLGLVKLQQGRKESWFIPT----------------------- 178
Y + LS+ Q+ M+ D D GL+ + F PT
Sbjct: 291 YPVDPLSDTQKIMLDDLIDYGLIYTPSKTNKKIFYPTRLATTLTSEHTNFKTSAAVIDQE 350
Query: 179 IADS----------LETNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKESLYNA 228
I +S +ETNF++Y Y++S L IL LF ++ + N++ G IT+ES+ A
Sbjct: 351 ITNSKNSNNQGTIVVETNFKIYCYTSSPLQIAILNLFVHLKARFANMVTGVITRESVRRA 410
Query: 229 VENGLTAEQ------QNAHP----RVADRIPSVLE---------------------NVCD 257
+ NG+TA+Q +AHP + D++ LE V D
Sbjct: 411 LINGITADQMINYLGSHAHPWMVKQAEDKLARKLELESSIGNAAGQRQIDLEILPPTVVD 470
Query: 258 QIRLWESDLNRVEMTPAHYYDEFPSREDSKKM 289
QI+LW+ +L+R++ + Y +F + + +K+
Sbjct: 471 QIKLWQLELDRIQSFKGYLYKDFSTDLEFEKL 502
>gi|340518979|gb|EGR49219.1| trancription factor tfb2-like protein [Trichoderma reesei QM6a]
Length = 480
Score = 107 bits (266), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 79/302 (26%), Positives = 143/302 (47%), Gaps = 52/302 (17%)
Query: 32 LEAYAIGQWERFLLQLISSAQAERSINFCSSTMKVFQR----GLLIQRDKEAP-RLTESG 86
L+ YA +WE L ++SS + S+ S K + G L+ R +T++G
Sbjct: 140 LDRYARKKWEDVLHFVVSSVGYKSSLGEGSGPNKGVKELLIAGQLVDRRPNGSLGITQAG 199
Query: 87 FQFLLMDTNAQLWYIVREYISNSQHDSMLAYERGINQADLISFLLELSFHVAGEAYNLKT 146
F FLL + NAQ+W ++ ++ ++ G++ D++SFL L+ G AY+
Sbjct: 200 FTFLLQEANAQVWTLLLLWLEVLGNNK----SSGLDPVDMLSFLFMLASLELGRAYDTNA 255
Query: 147 LSEIQRSMIKDFADLGLVKLQQGRKESWFIPTIADSL----------------------- 183
L+E +R+M+ D GL+ + Q ++ +F +A +L
Sbjct: 256 LTEERRNMLPSLVDFGLIYIPQHKRSMFFPTRLATTLTSGGNSLRTISEGSLGLLGGGGT 315
Query: 184 ---------ETNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKESLYNAVENGLT 234
ETN+R+YAY+ S L +L LF+K+ + P+++ G +++ S+ A+ G+T
Sbjct: 316 GEQAGSVVIETNYRLYAYTQSALQIAVLALFAKLNMRFPDMVAGRLSRASIRQAINFGIT 375
Query: 235 AEQ------QNAHPRV-----ADRIPSVLENVCDQIRLWESDLNRVEMTPAHYYDEFPSR 283
A+Q +AH ++ P + V DQIRLW+ + R++ T + +F
Sbjct: 376 ADQIISYLSAHAHEQMHRTAALTNKPVLPPTVVDQIRLWQLENERMKTTSGFLFRDFTDD 435
Query: 284 ED 285
+D
Sbjct: 436 KD 437
>gi|308460924|ref|XP_003092760.1| hypothetical protein CRE_20979 [Caenorhabditis remanei]
gi|308252519|gb|EFO96471.1| hypothetical protein CRE_20979 [Caenorhabditis remanei]
Length = 470
Score = 107 bits (266), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 84/332 (25%), Positives = 162/332 (48%), Gaps = 64/332 (19%)
Query: 30 EDLEAYAIGQWERFLLQLISSAQAERSINFCSSTMKVFQRGLLIQRDKEAPRLTESGFQF 89
+++E A+ +W+ +L+ ++ E + +T +F++ D +T SGFQF
Sbjct: 139 KEVEKKAVERWD-CILRYLALPSEENTQAVSETTRNLFKKANFTSGDSRI-EITTSGFQF 196
Query: 90 LLMDTNAQLWYIVREYISNSQHDSMLAYERGINQADLISFLLEL------SFHVAGEAYN 143
LL+ Q+W V EY+ L +G + ++I L+++ F E Y
Sbjct: 197 LLLSPVKQMWTYVIEYLK-------LEMSQGQDIVEVIEPLIQIVLLANRGFKAEKECYQ 249
Query: 144 LK-TLSEIQRSMIKDFADLGLVKLQQGRKESWFIP----------TIADS---------- 182
+ + S Q+ ++ +LG++ +++ + +F+ TI D+
Sbjct: 250 IDPSWSIPQQELLNHLRELGVIFIRKRKDGVFFLTHLLTHLATNETIDDTSAERVSNGKV 309
Query: 183 -LETNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKESLYNAVENGLTAEQ---- 237
+ETNFR+YAY++S L I+ LF+++ Y+ ++ VG IT+ES+ A+++G+TA Q
Sbjct: 310 IVETNFRVYAYTSSLLQLAIIALFTEMTYRFQDMSVGMITRESVRGALQHGITAAQIISF 369
Query: 238 --QNAHPRV---ADRIPSVLENVCDQIRLWESDLNRVEMTPAHYYDEFPSRED------- 285
NAHP+ + I + V DQIRLWE + R+++ A+ Y F S ++
Sbjct: 370 LRANAHPQCIATSGAINCLPITVADQIRLWEDERRRMDLKDAYIYSHFESEDEFQGVCDY 429
Query: 286 -----------SKKMRLVVNAEIHMHMREFLR 306
+++ ++VN E H ++R++ +
Sbjct: 430 AQERGILLWANAQQKLVIVNEEGHEYVRQWYK 461
>gi|402083674|gb|EJT78692.1| RNA polymerase II transcription factor B subunit 2 [Gaeumannomyces
graminis var. tritici R3-111a-1]
Length = 496
Score = 106 bits (264), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 79/337 (23%), Positives = 156/337 (46%), Gaps = 80/337 (23%)
Query: 21 GITARLPTLED-----LEAYAIGQWERFLLQLISSAQAE-------RSINFCSSTMK--- 65
G+ + LP + L+ +A +W+ L +++S + + + ++ S ++
Sbjct: 124 GVPSSLPVPPNVDIPFLDKFARTRWDAILHYVVNSVEGDEFAQRPSKRLHSGGSKLQDTV 183
Query: 66 --VFQRGLLIQRDKEAPRLTESGFQFLLMDTNAQLWYIVREYI-----SNSQHDSMLAYE 118
+ G L++R + ++++GF FLL ++NAQ+W ++ +++ + H +M
Sbjct: 184 KELLVAGGLVERRGGSISISKTGFTFLLQESNAQVWTLLLQWLEAVNAAGGDHSAM---- 239
Query: 119 RGINQADLISFLLELSFHVAGEAYNLKTLSEIQRSMIKDFADLGLVKLQQGRKESWFIPT 178
D++SFL L G+AY+ + LSE +R+M+ D GLV + G +F
Sbjct: 240 ----AVDMLSFLFMLGTLELGQAYDTEELSEQRRNMLPSLVDFGLVYIPPGNTSQYFPTR 295
Query: 179 IADSL---------------------------------------ETNFRMYAYSTSKLHC 199
+A +L ETN+R+YAY+++ L
Sbjct: 296 LATTLTSGSSALRSASSALAAATAEGPNASGGGQSEAAKGSIIIETNYRLYAYTSTPLQI 355
Query: 200 EILRLFSKIEYQLPNLIVGAITKESLYNAVENGLTAEQ------QNAHP---RVAD--RI 248
IL LF+++ ++ ++ G + +ES+ A+ G+TA+Q +AH R A +
Sbjct: 356 AILGLFAELRFRFAGMVTGRLDRESIKRAISYGITADQVIEYLAAHAHEQMHRTATLRKK 415
Query: 249 PSVLENVCDQIRLWESDLNRVEMTPAHYYDEFPSRED 285
P + V DQIRLW+ + R+++ + +F S+ +
Sbjct: 416 PVLPPTVVDQIRLWQLETERMKIMRGFLFRDFDSQAE 452
>gi|310799661|gb|EFQ34554.1| transcription factor tfb2 [Glomerella graminicola M1.001]
Length = 485
Score = 105 bits (263), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 86/317 (27%), Positives = 147/317 (46%), Gaps = 59/317 (18%)
Query: 21 GITARLP-----TLEDLEAYAIGQWERFLLQLISSAQAERSI--NFCSSTMKVFQRGLLI 73
G+ + LP T+ L+ YA +WE L ++++ + SS + G L+
Sbjct: 126 GVPSSLPAPPEITVPFLDRYARRKWEDILHYIVNTVNPGGADLGGPKSSVKNLLVAGQLV 185
Query: 74 QRDKEAPRLTESGFQFLLMDTNAQLWYIVREYISNSQHDSMLAYERGINQADLISFLLEL 133
+R A +T++GF FLL + NAQ+W ++ ++ + H A G+ D++SFL L
Sbjct: 186 RRQGSAVGITQAGFTFLLQEANAQVWTLLLLWLEATDHAEDAA---GMESTDMLSFLFLL 242
Query: 134 SFHVAGEAYNLKTLSEIQRSMIKDFADLGLVKLQQGRKESWFIPT--------------- 178
+ G Y+ L+E +R+M+ D GL+ + + + +F PT
Sbjct: 243 ASLELGRPYDTNALTEARRNMLPSLLDFGLIYIPSHKPQQYF-PTRLATTLTSSSSALSY 301
Query: 179 ------------IADSL----------ETNFRMYAYSTSKLHCEILRLFSKIEYQLPNLI 216
A L ETN+R+YAY + L +L LF K++ + +++
Sbjct: 302 AHCRDSETFFQSYASHLMIRVRPFRLSETNYRVYAYGQTPLQIAVLSLFCKLKLRFADMV 361
Query: 217 VGAITKESLYNAVENGLTAEQ------QNAHPRV-----ADRIPSVLENVCDQIRLWESD 265
G +T+ S+ NAVE G+TA+Q +AH ++ A P + V DQIRLW+ +
Sbjct: 362 SGRLTRNSIRNAVERGITADQIISYLAAHAHEQMHRMAAARSRPILPPTVIDQIRLWQLE 421
Query: 266 LNRVEMTPAHYYDEFPS 282
R+ T + +F S
Sbjct: 422 TERMTTTSGFLFRDFDS 438
>gi|341886092|gb|EGT42027.1| hypothetical protein CAEBREN_00374 [Caenorhabditis brenneri]
Length = 460
Score = 105 bits (262), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 85/332 (25%), Positives = 158/332 (47%), Gaps = 58/332 (17%)
Query: 30 EDLEAYAIGQWERFLLQLISSAQAERSINFCSSTMKVFQRGLLIQRDKEAPRLTESGFQF 89
+++E A+ +W+ +L+ ++ E + +T +F+ D +T SGFQF
Sbjct: 127 KEVEKKAVERWD-CILRYLALPSEENTQAVSETTRNLFKMANFTSGDSRI-EITTSGFQF 184
Query: 90 LLMDTNAQLWYIVREYIS---NSQHDSMLAYERGINQADLISFLLELSFHVAGEAYNLK- 145
LL+ Q+W V EY+ + HD + E I I L + E Y +
Sbjct: 185 LLLSPVKQMWTYVIEYLKLEMSQGHDIVEVIEPLIQ----IVLLANRGYKAEKECYQIDP 240
Query: 146 TLSEIQRSMIKDFADLGLVKLQQGRKESWFIP----------TIADS-----------LE 184
+ + Q+ ++ +LG++ +++ + +F+ TI D+ +E
Sbjct: 241 SWTGPQQELLNHLRELGVIFIRKRKDGVFFLTQLLTHLATNETIDDTSAEKVSNGKVIVE 300
Query: 185 TNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKESLYNAVENGLTAEQ------Q 238
TNFR+YAY++S L I+ LF+++ Y+ ++ VG IT+ES+ A+++G+TA Q
Sbjct: 301 TNFRVYAYTSSLLQLAIIALFTEMTYRFQDMSVGMITRESVRGALQHGITAAQIISFLRA 360
Query: 239 NAHPRV---ADRIPSVLENVCDQIRLWESDLNRVEMTPAHYYDEFPSRE----------- 284
NAHP+ + + + V DQIRLWE + R+++ ++ Y F S E
Sbjct: 361 NAHPQCIATSGPVNCLPITVADQIRLWEDERRRMDLKDSYIYSNFESDEEFNGVCDYAKE 420
Query: 285 -------DSKKMRLVVNAEIHMHMREFLRGQN 309
D ++ ++VN E H ++R++ + Q
Sbjct: 421 RKILLWADYQRKLVIVNEEGHEYVRQWYKQQK 452
>gi|164660182|ref|XP_001731214.1| hypothetical protein MGL_1397 [Malassezia globosa CBS 7966]
gi|159105114|gb|EDP44000.1| hypothetical protein MGL_1397 [Malassezia globosa CBS 7966]
Length = 231
Score = 104 bits (260), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 69/234 (29%), Positives = 118/234 (50%), Gaps = 43/234 (18%)
Query: 47 LISSAQAERSINFCSSTMKVFQRGLLIQRDKEAP---RLTESGFQFLLMDTNAQLWYIVR 103
++ S QA N + + + QR L+QRD + +T GFQFLL D N+QLW ++
Sbjct: 1 MVGSEQAASPRN---TVLFLLQRAGLMQRDHQTNDKLNITSLGFQFLLQDVNSQLWALLL 57
Query: 104 EYISNSQHDSMLAYERGINQADLISFLLELSFHVAGEAYNLKTLSEIQRSMIKDFADLGL 163
Y+S +A ER ++ ++++F + G AY + S+ Q +++ +D GL
Sbjct: 58 HYLS-------MADERNMDLVEVLAFFFTVGGLELGRAYESRGFSQTQLQTLEELSDYGL 110
Query: 164 VKLQQGRKESWFIPTIADS-----------------------LETNFRMYAYSTSKLHCE 200
V + + +F PT S LETN+R+YAY+ + L
Sbjct: 111 V-YRPSKSAKYFFPTRLASTLTSTASPLLSRLNDQEEQGYLILETNYRVYAYTANLLRIA 169
Query: 201 ILRLFSKIEYQLPNLIVGAITKESLYNAVENGLTAEQ------QNAHPRVADRI 248
IL LF ++ +LPNL++G +T+ S+ +A+ G+TA+Q +AHP++ +
Sbjct: 170 ILNLFVTLKSRLPNLVIGQLTRHSVKSALNKGITADQIITYLTHHAHPQMYKNV 223
>gi|268534706|ref|XP_002632484.1| Hypothetical protein CBG13719 [Caenorhabditis briggsae]
Length = 482
Score = 104 bits (260), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 82/293 (27%), Positives = 144/293 (49%), Gaps = 46/293 (15%)
Query: 30 EDLEAYAIGQWERFLLQLISSAQAERSINFCSSTMKVFQRGLLIQRDKEAPRLTESGFQF 89
+D+E A+ +W+ L L + +E + S T K R + +T GFQF
Sbjct: 143 KDVEKKAVERWDCILRYL--ALPSEENTEAVSDTTKDLFRKANFTSGESRIEITTFGFQF 200
Query: 90 LLMDTNAQLWYIVREYISNSQHDSMLAYERGINQADLISFLLEL------SFHVAGEAYN 143
LL+ Q+W V EY+ L +G + ++I L+++ F E Y
Sbjct: 201 LLLSPVKQMWTYVIEYLK-------LEISKGNDIVEVIEPLIQIVLLANRGFKAEKECYQ 253
Query: 144 L-KTLSEIQRSMIKDFADLGLVKLQQGRKESWFIP----------TIADS---------- 182
+ + ++ Q ++ +LG++ +++ + +F+ TI D+
Sbjct: 254 IDEQWTQPQHDLLNHLRELGVIFIRKRKDGVFFLTHLLTHLATNETIDDTSSEKASNGKV 313
Query: 183 -LETNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKESLYNAVENGLTAEQ---- 237
+ETNFR+YAY++S L I+ LF+++ Y+ ++ VG IT+ES+ A+++G+TA Q
Sbjct: 314 IVETNFRVYAYTSSLLQLAIIALFTEMTYRFTDMSVGMITRESVRGALQHGITAAQIISF 373
Query: 238 --QNAHPR-VADRIP--SVLENVCDQIRLWESDLNRVEMTPAHYYDEFPSRED 285
NAHP+ VA P + V DQIRLWE + R+++ A+ Y F S ++
Sbjct: 374 LRANAHPQCVATSGPVNCLPITVADQIRLWEDERRRMDLKDAYIYSHFESDDE 426
>gi|302917488|ref|XP_003052448.1| predicted protein [Nectria haematococca mpVI 77-13-4]
gi|256733388|gb|EEU46735.1| predicted protein [Nectria haematococca mpVI 77-13-4]
Length = 496
Score = 104 bits (259), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 82/320 (25%), Positives = 145/320 (45%), Gaps = 71/320 (22%)
Query: 32 LEAYAIGQWERFLLQLISSAQAERSINFCS---STMKVFQRGLLIQRDKEA-PRLTESGF 87
L+ YA +WE L ++SS + + + S ++ G L+ R +T++GF
Sbjct: 142 LDRYARRKWEDILHFVVSSVGYKSTGDSSGPNKSVKELLIAGRLVDRKPNGMVGITQAGF 201
Query: 88 QFLLMDTNAQLWYIVREYISNSQHDSMLAYERGINQADLISFLLELSFHVAGEAYNLKTL 147
FLL + NAQ+W ++ ++ + G+ D++SFL L+ G AY+ L
Sbjct: 202 TFLLQEANAQVWTLLLLWLEAMDVNK----GAGLEATDMLSFLFVLASMELGRAYDTNAL 257
Query: 148 SEIQRSMIKDFADLGLVKLQQGRKESWFIPT---------------IADS---------- 182
+E +++M+ D GL+ + K S F PT I+D
Sbjct: 258 TEQRKNMLPSLVDFGLIYIPN-HKRSMFFPTRLATTLTSSGNSLRSISDGVAAATAAALQ 316
Query: 183 -----------------------LETNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVGA 219
+ETN+R+YAY+ S L +L LFSK+ + P+++ G
Sbjct: 317 PGQSGGSGGSTTGSGQEQRGSVIIETNYRIYAYTQSTLQIAVLALFSKLSMRFPDMVAGR 376
Query: 220 ITKESLYNAVENGLTAEQ------QNAHPRV-----ADRIPSVLENVCDQIRLWESDLNR 268
++++S+ A+ G+TA+Q +AH ++ + P + V DQIRLW+ + R
Sbjct: 377 LSRQSIRQAINFGITADQIISYLAAHAHDQMHRTAALNNKPVLPPTVVDQIRLWQLENER 436
Query: 269 VEMTPAHYYDEFPSREDSKK 288
++ T + +F ED K+
Sbjct: 437 MKTTSGFLFKDF---EDHKE 453
>gi|392901990|ref|NP_001255863.1| Protein Y73F8A.24, isoform a [Caenorhabditis elegans]
gi|26985915|emb|CAB70230.2| Protein Y73F8A.24, isoform a [Caenorhabditis elegans]
Length = 481
Score = 103 bits (258), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 77/293 (26%), Positives = 142/293 (48%), Gaps = 45/293 (15%)
Query: 30 EDLEAYAIGQWERFLLQLISSAQAERSINFCSSTMKVFQRGLLIQRDKEAPRLTESGFQF 89
+D+E A+ +W+ +L+ ++ E + +T +F++ +T GFQF
Sbjct: 139 KDVEKKAVERWD-CILRYLALPSEENTQAVSETTRNLFKKANFTSGGDTQIEITTFGFQF 197
Query: 90 LLMDTNAQLWYIVREYISNSQHDSMLAYERGINQADLISFLLEL------SFHVAGEAYN 143
LL+ Q+W V EY+ L +G + ++I L+++ F E Y
Sbjct: 198 LLLSPVKQMWTYVIEYLK-------LEMSQGQDIVEVIEPLIQIVLLANRGFKAERECYQ 250
Query: 144 LKT-LSEIQRSMIKDFADLGLVKLQQGRKESWFIP----------TIADS---------- 182
+ +E Q ++ +LG++ +++ + +F+ TI D
Sbjct: 251 IDANWTEPQNELLNHLRELGVIFIRKRKDGVFFLTQLLTHLATNETIDDVSAEKVSNGKV 310
Query: 183 -LETNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKESLYNAVENGLTAEQ---- 237
+ETNFR+YAY++S L I+ LF+++ Y+ ++ VG IT+ES+ A+++G+TA Q
Sbjct: 311 IVETNFRVYAYTSSLLQLAIIALFTEMTYRFQDMSVGMITRESVRGALQHGITAAQIISF 370
Query: 238 --QNAHPR---VADRIPSVLENVCDQIRLWESDLNRVEMTPAHYYDEFPSRED 285
NAHP+ + + + V DQIRLWE + R+ + A+ Y F S ++
Sbjct: 371 LRANAHPQCIATSGPVNCLPITVADQIRLWEDERRRMNLKDAYIYSHFESEDE 423
>gi|392901992|ref|NP_001255864.1| Protein Y73F8A.24, isoform b [Caenorhabditis elegans]
gi|290457493|emb|CBK19514.1| Protein Y73F8A.24, isoform b [Caenorhabditis elegans]
Length = 431
Score = 103 bits (258), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 77/293 (26%), Positives = 142/293 (48%), Gaps = 45/293 (15%)
Query: 30 EDLEAYAIGQWERFLLQLISSAQAERSINFCSSTMKVFQRGLLIQRDKEAPRLTESGFQF 89
+D+E A+ +W+ +L+ ++ E + +T +F++ +T GFQF
Sbjct: 89 KDVEKKAVERWD-CILRYLALPSEENTQAVSETTRNLFKKANFTSGGDTQIEITTFGFQF 147
Query: 90 LLMDTNAQLWYIVREYISNSQHDSMLAYERGINQADLISFLLEL------SFHVAGEAYN 143
LL+ Q+W V EY+ L +G + ++I L+++ F E Y
Sbjct: 148 LLLSPVKQMWTYVIEYLK-------LEMSQGQDIVEVIEPLIQIVLLANRGFKAERECYQ 200
Query: 144 LKT-LSEIQRSMIKDFADLGLVKLQQGRKESWFIP----------TIADS---------- 182
+ +E Q ++ +LG++ +++ + +F+ TI D
Sbjct: 201 IDANWTEPQNELLNHLRELGVIFIRKRKDGVFFLTQLLTHLATNETIDDVSAEKVSNGKV 260
Query: 183 -LETNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKESLYNAVENGLTAEQ---- 237
+ETNFR+YAY++S L I+ LF+++ Y+ ++ VG IT+ES+ A+++G+TA Q
Sbjct: 261 IVETNFRVYAYTSSLLQLAIIALFTEMTYRFQDMSVGMITRESVRGALQHGITAAQIISF 320
Query: 238 --QNAHPR---VADRIPSVLENVCDQIRLWESDLNRVEMTPAHYYDEFPSRED 285
NAHP+ + + + V DQIRLWE + R+ + A+ Y F S ++
Sbjct: 321 LRANAHPQCIATSGPVNCLPITVADQIRLWEDERRRMNLKDAYIYSHFESEDE 373
>gi|444320663|ref|XP_004180988.1| hypothetical protein TBLA_0E04140 [Tetrapisispora blattae CBS 6284]
gi|387514031|emb|CCH61469.1| hypothetical protein TBLA_0E04140 [Tetrapisispora blattae CBS 6284]
Length = 518
Score = 103 bits (257), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 79/334 (23%), Positives = 147/334 (44%), Gaps = 91/334 (27%)
Query: 32 LEAYAIGQWERFLLQLISSAQAERSINFCSSTMKVFQRGLLIQRDKEAP--RLTESGFQF 89
LE Y+ +WE L ++ + A + + + + L++ ++E ++T GFQF
Sbjct: 137 LEEYSTKKWETILHFMVGTPLATTP---SENVLNLLKHSKLMEENEETNEFKITNEGFQF 193
Query: 90 LLMDTNAQLWYIVREYISNSQHDSMLAYERGINQADLISFLLELSFHVAGEAYNLKTLSE 149
LL ++N+Q+W ++ +Y+ L ++ D+++F+ L G+AY++ +LSE
Sbjct: 194 LLQESNSQIWTLLLQYLK-------LTETLHMDPVDVLNFIFMLGALEFGKAYSISSLSE 246
Query: 150 IQRSMIKDFADLGLVKLQQGRKESWFIPT-----------------------IADSLETN 186
Q+ M+KD D GL+ Q+ + F PT + S ETN
Sbjct: 247 TQKIMLKDMRDYGLI-FQKNSNANVFYPTSMATMLTSDARNVRTASGAIDHILQRSQETN 305
Query: 187 -------------------------------FRMYAYSTSKLHCEILRLFSKIEYQLPNL 215
F++Y+YS S L +L LF ++ + N+
Sbjct: 306 KNSNNDDDEDVDQVGSNTQATADGALIIETNFKLYSYSNSPLQIAVLSLFVHLKTRFSNM 365
Query: 216 IVGAITKESLYNAVENGLTAEQ------QNAHPRV------------------ADRIPSV 251
+ G IT++S+ A+ NG+TAEQ ++HP++ D + +
Sbjct: 366 VTGQITRDSIRRALRNGITAEQIIAYLLTHSHPQMRRLAEGNLEKKLELDPNAKDSLQIL 425
Query: 252 LENVCDQIRLWESDLNRVEMTPAHYYDEFPSRED 285
V DQI+LW+ +L+R+ Y +F + ++
Sbjct: 426 PPTVVDQIKLWQLELDRIISHEGSLYSDFENNQE 459
>gi|453232316|ref|NP_001263824.1| Protein Y73F8A.24, isoform c [Caenorhabditis elegans]
gi|412976517|emb|CCO25636.1| Protein Y73F8A.24, isoform c [Caenorhabditis elegans]
Length = 485
Score = 103 bits (256), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 79/290 (27%), Positives = 145/290 (50%), Gaps = 35/290 (12%)
Query: 30 EDLEAYAIGQWERFLLQLISSAQAERSINFCSSTMKVFQRGLLIQRDKEAPRLTESGFQF 89
+D+E A+ +W+ +L+ ++ E + +T +F++ +T GFQF
Sbjct: 139 KDVEKKAVERWD-CILRYLALPSEENTQAVSETTRNLFKKANFTSGGDTQIEITTFGFQF 197
Query: 90 LLMDTNAQLWYIVREYIS--NSQHDSMLAYERGINQADLISFLLELS-FHVAGEAYNLKT 146
LL+ Q+W V EY+ SQ ++ + Q L++ ++++ F E Y +
Sbjct: 198 LLLSPVKQMWTYVIEYLKLEMSQGQDIVEVIEPLIQIVLLANRVQVAGFKAERECYQIDA 257
Query: 147 -LSEIQRSMIKDFADLGLVKLQQGRKESWFIP----------TIADS-----------LE 184
+E Q ++ +LG++ +++ + +F+ TI D +E
Sbjct: 258 NWTEPQNELLNHLRELGVIFIRKRKDGVFFLTQLLTHLATNETIDDVSAEKVSNGKVIVE 317
Query: 185 TNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKESLYNAVENGLTAEQ------Q 238
TNFR+YAY++S L I+ LF+++ Y+ ++ VG IT+ES+ A+++G+TA Q
Sbjct: 318 TNFRVYAYTSSLLQLAIIALFTEMTYRFQDMSVGMITRESVRGALQHGITAAQIISFLRA 377
Query: 239 NAHPR-VADRIP--SVLENVCDQIRLWESDLNRVEMTPAHYYDEFPSRED 285
NAHP+ +A P + V DQIRLWE + R+ + A+ Y F S ++
Sbjct: 378 NAHPQCIATSGPVNCLPITVADQIRLWEDERRRMNLKDAYIYSHFESEDE 427
>gi|254573074|ref|XP_002493646.1| Subunit of TFIIH and nucleotide excision repair factor 3 complexes
[Komagataella pastoris GS115]
gi|238033445|emb|CAY71467.1| Subunit of TFIIH and nucleotide excision repair factor 3 complexes
[Komagataella pastoris GS115]
gi|328354526|emb|CCA40923.1| RNA polymerase II transcription factor B subunit 2 [Komagataella
pastoris CBS 7435]
Length = 547
Score = 103 bits (256), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 84/340 (24%), Positives = 149/340 (43%), Gaps = 89/340 (26%)
Query: 30 EDLEAYAIGQWERFLLQLISSAQAER-SINFCS-----STMKVFQRGLLI---------Q 74
E L+ Y++ +WE L ++ S E SI S M + + I
Sbjct: 175 EFLDRYSLMKWENILHFMVGSEVPELPSIGVLSLLRHSGLMDIGEENEFIATPKRFKGDN 234
Query: 75 RDKEAPRLTESGFQFLLMDTNAQLWYIVREYISNSQHDSMLAYERGINQADLISFLLELS 134
D ++ ++T+ GFQFLL D NAQ+W ++ +Y+ S+ M N D+++F+ L
Sbjct: 235 MDLKSMKITQDGFQFLLQDINAQIWQLLLQYLRMSEKLMM-------NPVDVLNFIFMLG 287
Query: 135 FHVAGEAYNLKTLSEIQRSMIKDFADLGLVKLQQGRKESWFIPT---------------- 178
G+ Y + LS+ Q M++D D GL+ + K +F PT
Sbjct: 288 SLELGKQYPVTLLSDTQVIMLEDLVDYGLIYYPE--KNRYFYPTRMATTLTSEKTTFKTA 345
Query: 179 -------------IADS----LETNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAIT 221
+ D LETNF++Y Y+TS L IL LF + + N++ G IT
Sbjct: 346 SMSMNQVLEGGPEVKDHGSIVLETNFKLYCYTTSPLQIAILNLFVHLRTRFANMVTGMIT 405
Query: 222 KESLYNAVENGLTAEQ------QNAHPRVAD--------------------------RIP 249
+ES+ A+ NG+TA+Q +AH ++ ++
Sbjct: 406 RESVREALRNGITADQIIKYLETHAHSQMKKLAEEKLLKKLEFDSNATETQQIGSQVKLE 465
Query: 250 SVLENVCDQIRLWESDLNRVEMTPAHYYDEFPSREDSKKM 289
+ V DQI+LW+ +++R++ + +F + ++ +++
Sbjct: 466 VIPPTVVDQIKLWQLEMDRLQTFAGFLFKDFANAQEFEQL 505
>gi|313245784|emb|CBY34779.1| unnamed protein product [Oikopleura dioica]
Length = 456
Score = 102 bits (255), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 83/311 (26%), Positives = 156/311 (50%), Gaps = 57/311 (18%)
Query: 7 LINGGALPREPMPS-GITARLPTLEDLEAYAIGQWERFLLQLISSAQAERSINFCSSTMK 65
L GG R + + G T+E L+ Y +W++ +L ++ Q + S S
Sbjct: 123 LFGGGETWRPAVETLGADKNAKTVEQLDTYTKERWDQ-ILSFLTQEQGKLSEEVIS---- 177
Query: 66 VFQRGLLIQRDKEAPRLTESGFQFLLMDTNAQLWYIVREYISNSQHDSMLAYERGINQAD 125
L++ E FQFLL+D ++Q+WY++ +Y+ Q + G++ +
Sbjct: 178 ------LLKYAGLCDANGEKRFQFLLLDRSSQVWYLLVQYLGYVQ-------KLGLSLVN 224
Query: 126 LISFLLELSFHVAGEAYNL-KTLSEIQRSMIKDFADLGLVKLQQGRKESWFIPT-IADSL 183
+++F+L+L + G Y + +EI R +I+ F ++GL+ ++ KE F PT +A S+
Sbjct: 225 VLAFVLQLGYCSFGTDYPCDNSNNEISR-VIQHFREMGLI-FKRKSKEQRFYPTRLAQSI 282
Query: 184 --------------------ETNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKE 223
ETN+R+YAY+ S+LH ++ LF++++Y+ P +IV ++++
Sbjct: 283 SIAGGKKASSEDVQEQFILVETNYRIYAYTDSELHYALISLFAEVQYRFPYMIVAQMSRD 342
Query: 224 SLYNAVENGLTAEQ------QNAHPRVADR----IPSVLENVCDQIRLWESDLNRVEMTP 273
S+ + + G++AEQ +AHP +A + +P V+E D I LW + R++
Sbjct: 343 SIQQSADYGISAEQILNYLRSSAHP-IARKNKHWVPQVVE---DNIHLWCKERERLKFND 398
Query: 274 AHYYDEFPSRE 284
Y +F +E
Sbjct: 399 GLLYHQFLDQE 409
>gi|358385986|gb|EHK23582.1| hypothetical protein TRIVIDRAFT_36912 [Trichoderma virens Gv29-8]
Length = 492
Score = 102 bits (255), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 83/315 (26%), Positives = 144/315 (45%), Gaps = 66/315 (20%)
Query: 32 LEAYAIGQWERFLLQLISSAQAERSINFCSSTMKVFQR----GLLIQRDKEAP-RLTESG 86
L+ YA +WE L ++SS + S+ S K + G L+ R +T++G
Sbjct: 140 LDRYARKKWEDVLHFVVSSVGYKSSVGDGSGPNKGVKELLIAGRLVDRRPNGSLGITQAG 199
Query: 87 FQFLLMDTNAQLWYIVREYISNSQHDSMLAYERGINQADLISFLLELSFHVAGEAYNLKT 146
F FLL + NAQ+W ++ ++ ++ G++ D++SFL L+ G AY+
Sbjct: 200 FTFLLQEANAQVWTLLLLWLEVLGNNK----GSGLDPVDMLSFLFMLASLELGRAYDTNA 255
Query: 147 LSEIQRSMIKDFADLGLVKLQQGRKESWFIPT-IADSL---------------------- 183
L+E +R+M+ D GL+ + Q K S F PT +A +L
Sbjct: 256 LTEERRNMLPSLVDFGLIYIPQ-HKRSMFFPTRLATTLTSGGNSLRTISEGVTAATQSAQ 314
Query: 184 ----------------------ETNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAIT 221
ETN+R+YAY+ S L +L LF+K+ + P+++ G ++
Sbjct: 315 TSQQALGPLGGSGGEQAGSVVIETNYRLYAYTQSALQIAVLALFAKLNMRFPDMVAGRLS 374
Query: 222 KESLYNAVENGLTAEQ------QNAHPRV-----ADRIPSVLENVCDQIRLWESDLNRVE 270
+ S+ A+ G+TA+Q +AH ++ P + V DQIRLW+ + R++
Sbjct: 375 RASIRQAINFGITADQIISYLAAHAHEQMHRTAALTNKPVLPPTVVDQIRLWQLENERMK 434
Query: 271 MTPAHYYDEFPSRED 285
T + +F +D
Sbjct: 435 TTSGFLFRDFTDDKD 449
>gi|313224499|emb|CBY20289.1| unnamed protein product [Oikopleura dioica]
Length = 411
Score = 102 bits (255), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 83/311 (26%), Positives = 156/311 (50%), Gaps = 57/311 (18%)
Query: 7 LINGGALPREPMPS-GITARLPTLEDLEAYAIGQWERFLLQLISSAQAERSINFCSSTMK 65
L GG R + + G T+E L+ Y +W++ +L ++ Q + S S
Sbjct: 78 LFGGGETWRPAVETLGADKNAKTVEQLDTYTKERWDQ-ILSFLTQEQGKLSEEVIS---- 132
Query: 66 VFQRGLLIQRDKEAPRLTESGFQFLLMDTNAQLWYIVREYISNSQHDSMLAYERGINQAD 125
L++ E FQFLL+D ++Q+WY++ +Y+ Q + G++ +
Sbjct: 133 ------LLKYAGLCDANGEKRFQFLLLDRSSQVWYLLVQYLGYVQ-------KLGLSLVN 179
Query: 126 LISFLLELSFHVAGEAYNL-KTLSEIQRSMIKDFADLGLVKLQQGRKESWFIPT-IADSL 183
+++F+L+L + G Y + +EI R +I+ F ++GL+ ++ KE F PT +A S+
Sbjct: 180 VLAFVLQLGYCSFGTDYPCDNSNNEISR-VIQHFREMGLI-FKRKSKEQRFYPTRLAQSI 237
Query: 184 --------------------ETNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKE 223
ETN+R+YAY+ S+LH ++ LF++++Y+ P +IV ++++
Sbjct: 238 SIAGGKKASSEDVQEQFILVETNYRIYAYTDSELHYALISLFAEVQYRFPYMIVAQMSRD 297
Query: 224 SLYNAVENGLTAEQ------QNAHPRVADR----IPSVLENVCDQIRLWESDLNRVEMTP 273
S+ + + G++AEQ +AHP +A + +P V+E D I LW + R++
Sbjct: 298 SIQQSADYGISAEQILNYLRSSAHP-IARKNKHWVPQVVE---DNIHLWCKERERLKFND 353
Query: 274 AHYYDEFPSRE 284
Y +F +E
Sbjct: 354 GLLYHQFLDQE 364
>gi|453232318|ref|NP_001263825.1| Protein Y73F8A.24, isoform d [Caenorhabditis elegans]
gi|412976516|emb|CCO25635.1| Protein Y73F8A.24, isoform d [Caenorhabditis elegans]
Length = 435
Score = 102 bits (255), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 77/290 (26%), Positives = 144/290 (49%), Gaps = 35/290 (12%)
Query: 30 EDLEAYAIGQWERFLLQLISSAQAERSINFCSSTMKVFQRGLLIQRDKEAPRLTESGFQF 89
+D+E A+ +W+ +L+ ++ E + +T +F++ +T GFQF
Sbjct: 89 KDVEKKAVERWD-CILRYLALPSEENTQAVSETTRNLFKKANFTSGGDTQIEITTFGFQF 147
Query: 90 LLMDTNAQLWYIVREYIS--NSQHDSMLAYERGINQADLISFLLELS-FHVAGEAYNLKT 146
LL+ Q+W V EY+ SQ ++ + Q L++ ++++ F E Y +
Sbjct: 148 LLLSPVKQMWTYVIEYLKLEMSQGQDIVEVIEPLIQIVLLANRVQVAGFKAERECYQIDA 207
Query: 147 -LSEIQRSMIKDFADLGLVKLQQGRKESWFIP----------TIADS-----------LE 184
+E Q ++ +LG++ +++ + +F+ TI D +E
Sbjct: 208 NWTEPQNELLNHLRELGVIFIRKRKDGVFFLTQLLTHLATNETIDDVSAEKVSNGKVIVE 267
Query: 185 TNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKESLYNAVENGLTAEQ------Q 238
TNFR+YAY++S L I+ LF+++ Y+ ++ VG IT+ES+ A+++G+TA Q
Sbjct: 268 TNFRVYAYTSSLLQLAIIALFTEMTYRFQDMSVGMITRESVRGALQHGITAAQIISFLRA 327
Query: 239 NAHPR---VADRIPSVLENVCDQIRLWESDLNRVEMTPAHYYDEFPSRED 285
NAHP+ + + + V DQIRLWE + R+ + A+ Y F S ++
Sbjct: 328 NAHPQCIATSGPVNCLPITVADQIRLWEDERRRMNLKDAYIYSHFESEDE 377
>gi|116201905|ref|XP_001226764.1| hypothetical protein CHGG_08837 [Chaetomium globosum CBS 148.51]
gi|88177355|gb|EAQ84823.1| hypothetical protein CHGG_08837 [Chaetomium globosum CBS 148.51]
Length = 503
Score = 102 bits (254), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 90/380 (23%), Positives = 166/380 (43%), Gaps = 93/380 (24%)
Query: 21 GITARLPT-----LEDLEAYAIGQWERFLLQLISSAQAERSINFC-------SSTMKVFQ 68
G+ + LP + L+ YA +WE L +++S A+ +S ++
Sbjct: 125 GVPSTLPVAPRIDIAHLDGYARKKWEDILHYVVNSVPAQSEGGGGVSGGGPKTSVKELLL 184
Query: 69 RGLLIQR--DKEAP-RLTESGFQFLLMDTNAQLWYIVREYISNSQHDSMLAYERG---IN 122
G L++R D +A +T++GF FLL + NAQ+W ++ ++ + D +G +
Sbjct: 185 IGRLVERRHDTQAGVGITQAGFTFLLQEANAQVWTLLLLWLEAA--DRAKGEAKGAANTD 242
Query: 123 QADLISFLLELSFHVAGEAYNLKTLSEIQRSMIKDFADLGLVKLQQGRKESWFIPTIADS 182
D++SFL L+ G AYN L+E +R+M+ D GL+ + + +F +A +
Sbjct: 243 SIDMLSFLFMLASLELGRAYNTGALTETRRNMLPHLVDFGLIFIPREDTRQYFPTRLATT 302
Query: 183 L--------------------------------------------ETNFRMYAYSTSKLH 198
L ETN+R+YAY++S L
Sbjct: 303 LTSSASSLRSVSSGFNAATANNPGDTSSLGTTPETSAASKGSVIIETNYRLYAYTSSPLQ 362
Query: 199 CEILRLFSKIEYQLPNLIVGAITKESLYNAVENGLTAEQ------QNAHPRV-----ADR 247
+L LF+++ + + G +T++S+ A+ G+TA+Q +AH ++ A
Sbjct: 363 IAVLGLFTQLNMRFAGMATGRLTRDSIRRAIGFGITADQIISYLASHAHDQMVRAAAATG 422
Query: 248 IPSVLENVCDQIRLWESDLNRVEMTPAHYYDEFPSRED-----------------SKKMR 290
P + V DQIRLW+ + R+ + + +F S E+ S K R
Sbjct: 423 RPVLPPTVVDQIRLWQLENERMRTSAGFLFKDFDSLEEYVSLSSYADEVGVLVWRSDKKR 482
Query: 291 LVVNAEIHMHMREFLRGQNK 310
+ ++I +R++L+ + K
Sbjct: 483 MFYASKIE-QLRDYLKSRKK 501
>gi|336270172|ref|XP_003349845.1| hypothetical protein SMAC_00733 [Sordaria macrospora k-hell]
gi|380095234|emb|CCC06707.1| unnamed protein product [Sordaria macrospora k-hell]
Length = 496
Score = 102 bits (254), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 92/382 (24%), Positives = 165/382 (43%), Gaps = 104/382 (27%)
Query: 21 GITARLPT-----LEDLEAYAIGQWERFLLQLISSAQAERSINFCS----STMKVFQRGL 71
G+ + LP + L+ YA +W+ L +++S + S S S ++ G
Sbjct: 125 GVPSSLPVDPTIDIGYLDKYARKKWDDILHYVVNSLGVQSSSEGVSGPKASVKELLLAGR 184
Query: 72 LIQR---DKEAPRLTESGFQFLLMDTNAQLWYIVREYISNSQHDSMLAYERGINQADLIS 128
L++R + +T++GF FLL ++NAQ+W ++ ++ + H A + G++ D++S
Sbjct: 185 LVERRPDTRTGIGITQAGFTFLLQESNAQVWTLLLLWLEAADH----AADSGMDSIDMLS 240
Query: 129 FLLELSFHVAGEAYNLKTLSEIQRSMIKDFADLGLVKLQQGRKESWFIPT-IADSL---- 183
FL LS G AY+ L+E +R+M+ D GL+ + ++ F PT +A +L
Sbjct: 241 FLFMLSSLELGTAYDTSALTETRRNMLPSLVDFGLIYFPRDTRQ--FFPTRLATTLTSTA 298
Query: 184 ------------------------------------------------ETNFRMYAYSTS 195
ETN+R+YAY+TS
Sbjct: 299 SALRTVSSAFTAATANPSGEPGTTTSTSGGPAGATPADKTGTSKGIIIETNYRIYAYTTS 358
Query: 196 KLHCEILRLFSKIEYQLPNLIVGAITKESLYNAVENGLTAEQ------QNAHPRVADRIP 249
L +L LF ++ + PN++ A+ A+ G+TA+Q +AH ++
Sbjct: 359 PLQIAVLALFCQLNMRFPNMVSAAL------RAIGFGITADQIISYLHAHAHQQMVREAT 412
Query: 250 ----SVL-ENVCDQIRLWESDLNRVEMTPAHYYDEFPSREDSKKM--------------- 289
+VL V DQIRLW+ + R++ T + +F S E+ +
Sbjct: 413 VTGKTVLPPTVVDQIRLWQLENERMQTTAGFLFKDFESTEEYAALSRYAEEIGVLVWKND 472
Query: 290 -RLVVNAEIHMHMREFLRGQNK 310
R + A H +R++L+ + K
Sbjct: 473 KRQLFFASKHEQLRDYLKSRKK 494
>gi|50291141|ref|XP_448003.1| hypothetical protein [Candida glabrata CBS 138]
gi|62901305|sp|Q6FP41.1|TFB2_CANGA RecName: Full=RNA polymerase II transcription factor B subunit 2;
AltName: Full=RNA polymerase II transcription factor B
52 kDa subunit; AltName: Full=RNA polymerase II
transcription factor B p52 subunit
gi|49527314|emb|CAG60954.1| unnamed protein product [Candida glabrata]
Length = 504
Score = 101 bits (252), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 83/330 (25%), Positives = 141/330 (42%), Gaps = 87/330 (26%)
Query: 32 LEAYAIGQWERFLLQLISSAQAERSINFCSSTMKVFQRGLLIQR--DKEAPRLTESGFQF 89
L+ YA +WE L ++ + A+ + + + + L++ D +T GFQF
Sbjct: 139 LDEYAATKWETILHFMVGTPMAKMP---SENVLNLLKHSKLMEEVPDSSEFMITNEGFQF 195
Query: 90 LLMDTNAQLWYIVREYISNSQHDSMLAYERGINQADLISFLLELSFHVAGEAYNLKTLSE 149
LL + N+Q+W ++ +Y+ LA ++ +++F+ L G+AY+ + LSE
Sbjct: 196 LLQEVNSQIWSLLLQYLK-------LAESLHMDPVHVLNFIFMLGALETGKAYSTENLSE 248
Query: 150 IQRSMIKDFADLGLVKLQQGRKESWFIPT------------------------------- 178
Q M+ D D GLV Q+ + F PT
Sbjct: 249 TQLKMLLDMRDYGLV-FQKTSNPNIFYPTRLAQMLTSDTKSMRTASGAMESVLNKPDDAA 307
Query: 179 ----------------IADS---LETNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVGA 219
I D +ETNF++Y+Y S L IL LF ++ + N++ G
Sbjct: 308 KSTDDKYDSLEGKAEDIQDGALIIETNFKLYSYCNSPLQIAILSLFVHLKSRFANMVAGQ 367
Query: 220 ITKESLYNAVENGLTAEQ------QNAHPRV------------------ADRIPSVLENV 255
IT+ES+ A+ NG+TA+Q +AHP++ D + + V
Sbjct: 368 ITRESIRRALINGITADQVIAYLESHAHPQMRRLAEEKLQKKLELDPNCKDPLQVLPPTV 427
Query: 256 CDQIRLWESDLNRVEMTPAHYYDEFPSRED 285
DQI+LW+ +L+RV Y +F + +D
Sbjct: 428 VDQIKLWQLELDRVLTYEGSLYIDFDTAQD 457
>gi|340939354|gb|EGS19976.1| RNA polymerase II transcription factor B subunit 2-like protein
[Chaetomium thermophilum var. thermophilum DSM 1495]
Length = 514
Score = 99.8 bits (247), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 83/345 (24%), Positives = 147/345 (42%), Gaps = 80/345 (23%)
Query: 21 GITARLPT-----LEDLEAYAIGQWERFLLQLISSAQAERSINFC--------SSTMKVF 67
G+ + LP + L+ YA +WE L ++SS +S +
Sbjct: 127 GVPSSLPVDPRIDIAFLDNYARKKWEDILHYVVSSVPVHGDAGPGGMGGGGPKASVKDLL 186
Query: 68 QRGLLIQR---DKEAPRLTESGFQFLLMDTNAQLWYIVREYI-----------SNSQHDS 113
G L++R K +T++GF FLL + NAQ+W ++ ++ + S D
Sbjct: 187 LAGRLVERRPDTKTGIGITQAGFTFLLQEANAQVWTLLLLWLEAADQAKAAAAAASGVDP 246
Query: 114 MLAYERGINQADLISFLLELSFHVAGEAYNLKTLSEIQRSMIKDFADLGLVKLQQGRKES 173
A + +++SFL L+ G AY+ LSE +R+M+ D GL+ + +
Sbjct: 247 KNAPPTKPDSIEMLSFLFMLASLELGRAYDTDALSETRRNMLPALVDFGLIYIPREDTRQ 306
Query: 174 WFIPTIADSL------------------------------------------ETNFRMYA 191
+F +A +L ETN+R+YA
Sbjct: 307 YFPTRLATTLTSSASALRSVSSGFTAATNNTANDASSLGGADPSAHKGSIIIETNYRLYA 366
Query: 192 YSTSKLHCEILRLFSKIEYQLPNLIVGAITKESLYNAVENGLTAEQ------QNAHPRV- 244
Y++S L +L LF+ + + ++ G +T+ES+ A+ G+TA+Q +AH ++
Sbjct: 367 YTSSPLQIAVLALFTHLNMRFAGMVTGRLTRESIRRAISFGITADQIISYLASHAHEQMV 426
Query: 245 ----ADRIPSVLENVCDQIRLWESDLNRVEMTPAHYYDEFPSRED 285
A P + V DQIRLW+ + R+ +P + +F + E+
Sbjct: 427 RAAAAAGRPVLPPTVVDQIRLWQLENERMRTSPGFLFKDFENVEE 471
>gi|398406290|ref|XP_003854611.1| hypothetical protein MYCGRDRAFT_69317 [Zymoseptoria tritici IPO323]
gi|339474494|gb|EGP89587.1| hypothetical protein MYCGRDRAFT_69317 [Zymoseptoria tritici IPO323]
Length = 493
Score = 99.4 bits (246), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 81/302 (26%), Positives = 135/302 (44%), Gaps = 52/302 (17%)
Query: 32 LEAYAIGQWERFLLQLISSAQAERS--INFCSSTMKVFQRGLLIQRDKEAPR--LTESGF 87
L+ +A QWE L ++ SA + S + + T ++ Q+G +Q + +T++GF
Sbjct: 147 LDDFARRQWEAILYYVVGSANSGLSGDLEISAGTKRLLQQGNFVQIKSGGKQRLITQAGF 206
Query: 88 QFLLMDTNAQLWYIVREYISNSQHDSMLAYERGINQADLISFLLELSFHVAGEAYNLKTL 147
FLL + NAQ+W + Y+ + M + D++SFL L G Y+ L
Sbjct: 207 TFLLEEVNAQVWSLAVVYLRVCEDLQM-------DPVDVLSFLFTLGSLELGIPYSTSNL 259
Query: 148 SEIQRSMIKDFADLGLVKLQQGRKESWFIPTIADS------------------------- 182
+ Q+ M+ D D GL+ +++ +A +
Sbjct: 260 TLTQQHMLDDLQDFGLIYRSSPTATAYYPTRLATTLTSDAPALPNNTSSTTTTAATESNE 319
Query: 183 -----LETNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKESLYNAVENGLTAEQ 237
LETN+R+YAY++S L IL LFS + + PNLI ITK S+ +A+ +T++Q
Sbjct: 320 KGYIILETNYRLYAYTSSPLQISILSLFSTLHTRYPNLITAKITKSSIASAISQSITSDQ 379
Query: 238 ------QNAHPRVADR-----IPSVLENVCDQIRLWESDLNRVEMTPAHYYDEFPSREDS 286
+AHP + + P + V DQIRLW+ + R+ Y + E+
Sbjct: 380 IITYLSTHAHPVLRRQAAIMSAPILPPTVVDQIRLWQIEGERMTTWKGFYIRDVGGWEEY 439
Query: 287 KK 288
K
Sbjct: 440 VK 441
>gi|358394641|gb|EHK44034.1| hypothetical protein TRIATDRAFT_222970 [Trichoderma atroviride IMI
206040]
Length = 491
Score = 99.0 bits (245), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 81/315 (25%), Positives = 144/315 (45%), Gaps = 67/315 (21%)
Query: 32 LEAYAIGQWERFLLQLISSAQAERSINFCSSTMKVFQR----GLLIQRDKEAP-RLTESG 86
L+ YA +W+ +L + S+ +S+ S K + G L+ R +T++G
Sbjct: 140 LDRYARKKWDD-VLHFVVSSVGYKSVGDGSGPNKGVKELLIAGRLVDRRPNGGLGITQAG 198
Query: 87 FQFLLMDTNAQLWYIVREYISNSQHDSMLAYERGINQADLISFLLELSFHVAGEAYNLKT 146
F FLL + NAQ+W ++ ++ ++ G++ D++SFL L+ G AY+
Sbjct: 199 FTFLLQEANAQVWTLLLLWLDVLGNNK----GSGLDPVDMLSFLFMLASLELGRAYDTNA 254
Query: 147 LSEIQRSMIKDFADLGLVKLQQGRKESWFIPT-IADSL---------------------- 183
L+E +R+M+ D GL+ + Q K S F PT +A +L
Sbjct: 255 LTEERRNMLPSLVDFGLIYIPQ-HKRSMFFPTRLATTLTSGGNSLRTISEGVTAATQSAQ 313
Query: 184 ----------------------ETNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAIT 221
ETN+R+YAY+ S L +L LF+K+ + P+++ G ++
Sbjct: 314 TSQQSLGPLGGGGEQQSGSVVIETNYRLYAYTQSALQIAVLALFAKLNMRFPDMVAGRLS 373
Query: 222 KESLYNAVENGLTAEQ------QNAHPRV-----ADRIPSVLENVCDQIRLWESDLNRVE 270
+ S+ A+ G+TA+Q +AH ++ P + V DQIRLW+ + R++
Sbjct: 374 RASIRQAINFGITADQIISYLAAHAHEQMHRTAALTNKPVLPPTVVDQIRLWQLENERMK 433
Query: 271 MTPAHYYDEFPSRED 285
T + +F +D
Sbjct: 434 TTSGFLFRDFTDDKD 448
>gi|412992644|emb|CCO18624.1| predicted protein [Bathycoccus prasinos]
Length = 464
Score = 98.6 bits (244), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 75/273 (27%), Positives = 118/273 (43%), Gaps = 70/273 (25%)
Query: 32 LEAYAIGQWERFLLQLISSAQAERSINFCSSTM----------------KVFQRGLLIQR 75
L+ YA +WE LL+L S A E+ K+F LI +
Sbjct: 190 LDHYAKSRWETVLLELTSEASVEKKRKKKKMMKKKGDGGAGAQHALHLRKLFYAARLITK 249
Query: 76 DKEAPRLTESGFQFLLMDTNAQLWYIVREYI----------------SNSQHDSMLAYER 119
D R+T GF FLL T+ Q+W ++ Y N + D M
Sbjct: 250 D---GRITSEGFSFLLGATSEQIWILLARYARGGDFEKKMKNKTTNEENGEGDKMETNGE 306
Query: 120 GINQ----------ADLISFLLELSFHVAGEAYNLKTLSEIQRSMIKDFADLGLV--KLQ 167
Q A ++FL+ LSF G Y+ LSE +R + + LG++
Sbjct: 307 DEKQQHKLKSDESSAAAMAFLVRLSFQHPGRKYSKANLSEAERRVASHLSALGVLYENED 366
Query: 168 QGRKESWFIPTIADS-----------------------LETNFRMYAYSTSKLHCEILRL 204
+W++PT+ + +ETNFR+YAY+ S+L E+LRL
Sbjct: 367 DENDNNWYVPTVLSAGLSSVSTTSSAKSALARIDGHIIVETNFRVYAYTHSELETEVLRL 426
Query: 205 FSKIEYQLPNLIVGAITKESLYNAVENGLTAEQ 237
F++ +Y+LPN VG IT++S+ +A+ G++ +Q
Sbjct: 427 FTRPDYKLPNAYVGMITRDSILDAMRAGISPDQ 459
>gi|256086358|ref|XP_002579367.1| tfiih polypeptide [Schistosoma mansoni]
Length = 486
Score = 98.6 bits (244), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 85/326 (26%), Positives = 141/326 (43%), Gaps = 75/326 (23%)
Query: 28 TLEDLEAYAIGQWERFLLQLISSAQAERSINFCSSTMK--VFQRGLLIQRDKEAP-RLTE 84
+++ L++YA +W+ L ++ S AE S +K + L+ + P +T+
Sbjct: 134 SVDFLKSYAAERWDAILHFMVGSESAE-----VGSVVKDVLLLSNLMKCEGNDCPIGITK 188
Query: 85 SGFQFLLMDTNAQLWYIVREYISNSQHDSMLAYERGINQADLISFLLELSFHVAGEAYNL 144
GF FLLM Q+ + Y + +S N + F+ +LSF ++Y +
Sbjct: 189 HGFHFLLMSRQFQVLVFILHYFDYLKENSK-------NLVGALQFVFQLSFLCPTKSYPV 241
Query: 145 KTLSEIQRSMIKDFADLGL------------------------VKLQQGRKESW-----F 175
+ LS Q+ +++ +LGL + + W
Sbjct: 242 EALSTAQQEVLQHMRELGLAYQRKRTAPRFYVTPLALDFAGGHTTFLESKSGGWGPQSGV 301
Query: 176 IPT------------------IADS-------LETNFRMYAYSTSKLHCEILRLFSKIEY 210
IPT +++S LETNFR+YAY+ S L +L LFSKI
Sbjct: 302 IPTGVSKSDPTDSNKMFSQISVSNSSDVGYILLETNFRLYAYTDSPLRTALLSLFSKIRA 361
Query: 211 QLPNLIVGAITKESLYNAVENGLTAEQ------QNAHPRVADRIPSVLENVCDQIRLWES 264
+ PNL+V IT++S+ A+ G+TA Q NAHP + + P + + DQIRLWE
Sbjct: 362 RFPNLVVADITRDSVREALIRGITANQILSFLTANAHPDMLLQNPILPPTLTDQIRLWEL 421
Query: 265 DLNRVEMTPAHYYDEFPSREDSKKMR 290
+ +R Y++F D + +R
Sbjct: 422 ERDRFLFQEGCLYEQFSRNTDFEMVR 447
>gi|353231086|emb|CCD77504.1| putative tfiih, polypeptide [Schistosoma mansoni]
Length = 486
Score = 98.6 bits (244), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 85/326 (26%), Positives = 141/326 (43%), Gaps = 75/326 (23%)
Query: 28 TLEDLEAYAIGQWERFLLQLISSAQAERSINFCSSTMK--VFQRGLLIQRDKEAP-RLTE 84
+++ L++YA +W+ L ++ S AE S +K + L+ + P +T+
Sbjct: 134 SVDFLKSYAAERWDAILHFMVGSESAE-----VGSVVKDVLLLSNLMKCEGNDCPIGITK 188
Query: 85 SGFQFLLMDTNAQLWYIVREYISNSQHDSMLAYERGINQADLISFLLELSFHVAGEAYNL 144
GF FLLM Q+ + Y + +S N + F+ +LSF ++Y +
Sbjct: 189 HGFHFLLMSRQFQVLVFILHYFDYLKENSK-------NLVGALQFVFQLSFLCPTKSYPV 241
Query: 145 KTLSEIQRSMIKDFADLGL------------------------VKLQQGRKESW-----F 175
+ LS Q+ +++ +LGL + + W
Sbjct: 242 EALSTAQQEVLQHMRELGLAYQRKRTAPRFYVTPLALDFAGGHTTFLESKSGGWGPQSGV 301
Query: 176 IPT------------------IADS-------LETNFRMYAYSTSKLHCEILRLFSKIEY 210
IPT +++S LETNFR+YAY+ S L +L LFSKI
Sbjct: 302 IPTGVSKSDPTDSNKMFSQISVSNSSDVGYILLETNFRLYAYTDSPLRTALLSLFSKIRA 361
Query: 211 QLPNLIVGAITKESLYNAVENGLTAEQ------QNAHPRVADRIPSVLENVCDQIRLWES 264
+ PNL+V IT++S+ A+ G+TA Q NAHP + + P + + DQIRLWE
Sbjct: 362 RFPNLVVADITRDSVREALIRGITANQILSFLTANAHPDMLLQNPILPPTLTDQIRLWEL 421
Query: 265 DLNRVEMTPAHYYDEFPSREDSKKMR 290
+ +R Y++F D + +R
Sbjct: 422 ERDRFLFQEGCLYEQFSRNTDFEMVR 447
>gi|390370355|ref|XP_783140.3| PREDICTED: general transcription factor IIH subunit 4-like, partial
[Strongylocentrotus purpuratus]
Length = 180
Score = 97.1 bits (240), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 50/114 (43%), Positives = 71/114 (62%), Gaps = 6/114 (5%)
Query: 183 LETNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKESLYNAVENGLTAEQ----- 237
+ETNFR+YAY+ S L EIL LF + Y+ PNL V A+T+ES+ A+ NG+TAEQ
Sbjct: 34 VETNFRIYAYTESDLQVEILGLFCSMMYRFPNLSVAALTRESVQLAISNGITAEQILSFL 93
Query: 238 -QNAHPRVADRIPSVLENVCDQIRLWESDLNRVEMTPAHYYDEFPSREDSKKMR 290
+AHP + + P V + DQ+RLWE + +R+ T Y+EF S D + +R
Sbjct: 94 RTHAHPNMRLKTPIVPPTISDQVRLWELERDRLSFTQGIIYNEFLSLHDFEVLR 147
>gi|156839389|ref|XP_001643386.1| hypothetical protein Kpol_479p16 [Vanderwaltozyma polyspora DSM
70294]
gi|156113994|gb|EDO15528.1| hypothetical protein Kpol_479p16 [Vanderwaltozyma polyspora DSM
70294]
Length = 504
Score = 97.1 bits (240), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 74/283 (26%), Positives = 125/283 (44%), Gaps = 86/283 (30%)
Query: 81 RLTESGFQFLLMDTNAQLWYIVREYISNSQHDSMLAYERGINQADLISFLLELSFHVAGE 140
++T GFQFLL + N Q+W ++ +Y+ +A +N D++ F+ L G+
Sbjct: 185 KITNEGFQFLLQEVNLQIWTLLLQYLK-------MAETFRMNPVDVLHFIFMLGALEFGK 237
Query: 141 AYNLKTLSEIQRSMIKDFADLGLVKLQQGRKESWFIPT-IADSLETNFR----------- 188
AY+ + LS Q++M+KD D GL+ Q+ + F PT +A L ++ R
Sbjct: 238 AYSTEELSATQKTMMKDMRDYGLI-FQKNSNTNVFYPTRLATMLTSDSRTVRNASSAMDS 296
Query: 189 ------------------------------------------MYAYSTSKLHCEILRLFS 206
+Y+YS S L IL LF
Sbjct: 297 VLTQSKDEPSGATSGSADVDEQVGTQGQNIQDGALVVETNFKLYSYSNSPLQIAILSLFV 356
Query: 207 KIEYQLPNLIVGAITKESLYNAVENGLTAEQ------QNAHPRV----ADRIPSVLE--- 253
++ + N++ G IT+ES+ NA+ NG+TAEQ +AHP++ +R+ LE
Sbjct: 357 HLKTRFSNMVTGQITRESIRNALSNGITAEQIIAYLETHAHPQMRRLAEERLKKKLELDQ 416
Query: 254 -----------NVCDQIRLWESDLNRVEMTPAHYYDEFPSRED 285
V DQI+LW+ +L+R+ Y +F ++++
Sbjct: 417 NSKETLQILPPTVVDQIKLWQLELDRIISYEGSLYSDFDNKQE 459
>gi|392574410|gb|EIW67546.1| hypothetical protein TREMEDRAFT_33390 [Tremella mesenterica DSM
1558]
Length = 504
Score = 96.3 bits (238), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 89/364 (24%), Positives = 147/364 (40%), Gaps = 78/364 (21%)
Query: 17 PMPSGITARLPTLEDLEAYAIGQWERFLLQLISSAQAERSINFCSSTMKVFQ----RGLL 72
P P T P+ L + WE L ++SS +R V + GL+
Sbjct: 144 PYPLSPTDEYPSESQLIQFGDRTWESILKYMVSSG-LDRGFPVARPETSVLRLLHSSGLM 202
Query: 73 IQRDKEAPR--------LTESGFQFLLMDTNAQLWYIVREYISNSQHDSMLAYERGINQA 124
+ R +T GFQFLL D QLW I+ Y+++ + I+ A
Sbjct: 203 ADLSESNGRQQSLDRMTITSQGFQFLLEDRQTQLWQILVFYLTSIEVSC-------ISSA 255
Query: 125 DLISFLLELSFHVAGEAYNLKTLSE-IQRSMIKDFADLGLV---KLQQGRKESWFIPTIA 180
++S L ++Y+L T S Q + D GL+ G K +F PT
Sbjct: 256 PVLSLFFSLGCMQITQSYSLSTFSNPTQLQALDDLQSYGLIYRPATPSGAKADYFFPTHL 315
Query: 181 DS------------------------------LETNFRMYAYSTSKLHCEILRLFSKIEY 210
+ LETN+++YAY+ ++L IL LF I+
Sbjct: 316 STSLCSGNSALSAALNTTEIDTSHEDDKKFLILETNYKIYAYTNNELEIAILNLFMDIKV 375
Query: 211 QLPNLIVGAITKESLYNAVENGLTAE------QQNAHPRVADRIPSVLE-NVCDQIRLWE 263
Q NL+VG + + + A+E G++A Q +AHP++ P +L + DQ+ LW+
Sbjct: 376 QYRNLVVGKLDRAHVKAAMEKGISAYQIIAYLQSHAHPQMYSSPPPILHTTIVDQLHLWD 435
Query: 264 SDLNRVEMTPAHYYDEFPSR--EDS---------------KKMRLVVNAEIHMHMREFLR 306
+ NR+ + ++ F ED+ K L VN + +++F++
Sbjct: 436 KERNRLRTEESEMFEFFSKDLYEDTEAEAKRYDGLLLAVPKDKLLFVNPSVKDAIKDFVK 495
Query: 307 GQNK 310
GQ +
Sbjct: 496 GQQR 499
>gi|367030175|ref|XP_003664371.1| hypothetical protein MYCTH_2307126 [Myceliophthora thermophila ATCC
42464]
gi|347011641|gb|AEO59126.1| hypothetical protein MYCTH_2307126 [Myceliophthora thermophila ATCC
42464]
Length = 512
Score = 95.9 bits (237), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 87/387 (22%), Positives = 162/387 (41%), Gaps = 98/387 (25%)
Query: 21 GITARLPT-----LEDLEAYAIGQWERFLLQLISSAQAERSINFC-------SSTMKVFQ 68
G+ + LP + L++YA +WE L +++S A+ +S +
Sbjct: 125 GVPSTLPVDPRIDIAYLDSYARRKWEDILHYVVNSVPAQGEGGGGGSVGGPKASVKDLLL 184
Query: 69 RGLLIQR---DKEAPRLTESGFQFLLMDTNAQLWYIVREYISNSQH----------DSML 115
G L++R K +T++GF FLL + NAQ+W ++ ++ +
Sbjct: 185 IGRLVERRNDTKAGVGITQAGFTFLLQEANAQVWTLLLLWLEAADRAKGAAEQGKGGGAA 244
Query: 116 AYERGINQADLISFLLELSFHVAGEAYNLKTLSEIQRSMIKDFADLGLVKLQQGRKESWF 175
A + D++SFL L+ G AY+ LSE +R+M+ D GL+ + + +F
Sbjct: 245 AAAAKADSIDMLSFLFMLASLELGRAYDTDALSETRRNMLPALVDFGLIYIPREDTRQYF 304
Query: 176 IPTIADSL--------------------------------------------ETNFRMYA 191
+A +L ETN+R+YA
Sbjct: 305 PTRLATTLTSSASSLRSVSSGFSAAAANNPGDASSLGTTPETSAASKGSVIIETNYRLYA 364
Query: 192 YSTSKLHCEILRLFSKIEYQLPNLIVGAITKESLYNAVENGLTAEQ------QNAHPRV- 244
Y++S L +L LF+++ + + G +T++S+ A+ G+TA+Q +AH ++
Sbjct: 365 YTSSPLQIAVLALFTQLNMRFAGMATGRLTRDSIRRAIGFGITADQIISYLASHAHEQMV 424
Query: 245 ----ADRIPSVLENVCDQIRLWESDLNRVEMTPAHYYDEFPSRED--------------- 285
A P + V DQIRLW+ + R+ + + +F S ++
Sbjct: 425 RAAAATGRPVLPPTVVDQIRLWQLENERMRTSAGFLFKDFDSLDEYLSLSAYAEEIGVLV 484
Query: 286 --SKKMRLVVNAEIHMHMREFLRGQNK 310
S K R+ ++I +R++LR + +
Sbjct: 485 WKSDKKRMFYASKIE-QLRDYLRSRKR 510
>gi|367040709|ref|XP_003650735.1| hypothetical protein THITE_2110518 [Thielavia terrestris NRRL 8126]
gi|346997996|gb|AEO64399.1| hypothetical protein THITE_2110518 [Thielavia terrestris NRRL 8126]
Length = 513
Score = 95.1 bits (235), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 82/346 (23%), Positives = 150/346 (43%), Gaps = 81/346 (23%)
Query: 21 GITARLPT-----LEDLEAYAIGQWERFLLQLISSA--QAERSINFC------SSTMKVF 67
G+ + LP + L+ YA +WE L +++S AE +S +
Sbjct: 125 GVPSTLPVDPRIDIAHLDQYARKKWEDILHYVVNSVPVHAEGGGGGGSGGGPKASVKDLL 184
Query: 68 QRGLLIQR---DKEAPRLTESGFQFLLMDTNAQLWYIVREYISNSQHDSMLAY------- 117
G L++R + +T++GF FLL + NAQ+W ++ ++ + H A
Sbjct: 185 LAGRLVERRPDTRGGVAITQAGFTFLLQEANAQVWTLLLLWLEAADHSKAAAAAAGDHAK 244
Query: 118 ----ERGINQADLISFLLELSFHVAGEAYNLKTLSEIQRSMIKDFADLGLVKLQQGRKES 173
+ + D++SFL L+ G AY+ +L+E +R+M+ D GL+ + +
Sbjct: 245 GAASQGKPDSIDMLSFLFMLASLELGRAYDTDSLTETRRNMLPALVDFGLIYIPREDTRQ 304
Query: 174 WFIPTIADSL-------------------------------------------ETNFRMY 190
+F +A +L ETN+R+Y
Sbjct: 305 YFPTRLATTLTSSASALRSVSSGFSAAAANNPGDAASLGMTPDTTPTKGSLIIETNYRLY 364
Query: 191 AYSTSKLHCEILRLFSKIEYQLPNLIVGAITKESLYNAVENGLTAEQ------QNAHPRV 244
AY++S L +L LF+++ + ++ G +T++S+ A+ G+TA+Q +AH ++
Sbjct: 365 AYTSSPLQIAVLALFTQLNMRFAGMVTGRLTRDSIRRAISFGITADQIISYLASHAHEQM 424
Query: 245 -----ADRIPSVLENVCDQIRLWESDLNRVEMTPAHYYDEFPSRED 285
A P + V DQIRLW+ + R+ T + +F S E+
Sbjct: 425 TRAAAAAGRPVLPPTVVDQIRLWQLENERMRTTAGFLFKDFDSPEE 470
>gi|428181353|gb|EKX50217.1| TFB2 transcription factor B2 nucleotide excision repair [Guillardia
theta CCMP2712]
Length = 463
Score = 94.7 bits (234), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 75/279 (26%), Positives = 125/279 (44%), Gaps = 32/279 (11%)
Query: 28 TLEDLEAYAIGQWERFLLQLISSAQAERSINFCSSTMKVFQRGLLIQRDKE--------- 78
T E+L+ +A +WE L ++S + RG+L+ DK
Sbjct: 137 TAEELQQWAQNRWESILHYMVSPGLDPMKRPEPGWKPTKWVRGILVGEDKNGNSFMMSLQ 196
Query: 79 --APRLTESGFQFLLMDTNAQLWYIVREYISNSQHDSMLAYERGINQADLISFLLELSFH 136
AP++T GFQFLL Q+ ++ ++ ++ + D +S + +LSF
Sbjct: 197 NLAPKITAFGFQFLLRPLRNQILQMLMHVLTKKGSENK-------DLQDSLSCIFQLSFC 249
Query: 137 VAGEAYNLKTLSEIQRSMIKDFADLGLVKLQQGRKESWFIPT-----------IADSLET 185
G Y L LS + +I DLG V + ++ +F PT + T
Sbjct: 250 TLGAGYRLDLLSRSNQELITSLHDLGAVYFKPNDRQ-YFFPTPLIVNLCTESEVPSGPST 308
Query: 186 NFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKESLYNAVENGLTAEQQNAHPRVA 245
+ + +++ ILRLF++ Y+ P++I+ IT+ES+ NA+ + + +AHP+
Sbjct: 309 DAGVADEFSAEPAAGILRLFTRPIYKFPHMIIAVITRESIRNAL--IIEYLRMHAHPQCL 366
Query: 246 DRIPSVLENVCDQIRLWESDLNRVEMTPAHYYDEFPSRE 284
+ P V E V DQI WE + R+ PA Y F S E
Sbjct: 367 ENWPIVPEVVTDQICFWEQERCRIRAEPAVAYHNFFSGE 405
>gi|195477962|ref|XP_002086438.1| GE22864 [Drosophila yakuba]
gi|194186228|gb|EDW99839.1| GE22864 [Drosophila yakuba]
Length = 241
Score = 94.0 bits (232), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 68/209 (32%), Positives = 102/209 (48%), Gaps = 41/209 (19%)
Query: 130 LLELSFHVAGEAYNLKTLSEIQRSMIKDFADLGLVKLQQGRKESWFIPT----------- 178
L +LSF G Y+ + ++ + ++ + GLV Q+ RKE F PT
Sbjct: 2 LFQLSFSTLGRDYSSEGMNSQMLTFLQHLREFGLV-FQRKRKEGRFYPTRLALNVTSKEA 60
Query: 179 ------------IADS----LETNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITK 222
D +ETN+R+YAY+ S L +L LF+++ Y+ PNL+VG +T+
Sbjct: 61 AATASVAMDEEATQDCGYIVVETNYRVYAYTDSPLQVAVLGLFTELLYRFPNLVVGVLTR 120
Query: 223 ESLYNAVENGLTAEQ------QNAHPRV-----ADRIPSVL-ENVCDQIRLWESDLNRVE 270
+S+ A+ G+TAEQ Q AHP + A + S L V DQI+LWE + NR
Sbjct: 121 DSVRQALRGGITAEQIVSYLEQYAHPNMRLVESAIQSKSCLPPTVVDQIKLWELERNRFT 180
Query: 271 MTPAHYYDEFPSREDSKKMRLVVNAEIHM 299
T Y++F S D +R + IHM
Sbjct: 181 YTEGVVYNQFLSHTDFVTLRDYAQS-IHM 208
>gi|405123868|gb|AFR98631.1| transcription factor TFIIH complex subunit Tfb2 [Cryptococcus
neoformans var. grubii H99]
Length = 481
Score = 92.8 bits (229), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 82/300 (27%), Positives = 137/300 (45%), Gaps = 51/300 (17%)
Query: 26 LPTLEDLEAYAIGQWERFLLQLISSAQA---------ERSINFCSSTMKVFQRGLLIQRD 76
LP+ ++L AY +E L ++SS + ++ + G + R+
Sbjct: 142 LPSEDELVAYGEDTFESILKYMVSSGLGTEFSGSRPQPEVLQLLHASGLMTDPGDMTGRN 201
Query: 77 KEAPRLT--ESGFQFLLMDTNAQLWYIVREYISNSQHDSMLAYERGINQADLISFLLELS 134
RLT GFQFLL QLW I+ Y+S + +S ER ++++S L
Sbjct: 202 PNINRLTITSKGFQFLLEKRQTQLWEILMYYLSAKEANS----ERS---SEVLSMFFSLG 254
Query: 135 FHVAGEAYNLKTLSEIQRSMIKDFADLGLV-KLQQGRKESWFIPT-IADSL--------- 183
G+ Y+ + + D A G + K G + W PT +A SL
Sbjct: 255 CMQLGQDYSASKSFPHAQEALDDLAQYGFIYKSSPGSDQFW--PTHLATSLCSGDASAIQ 312
Query: 184 ------------ETNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKESLYNAVEN 231
ETN+++YAY++++L IL LF I + PNL+VG + ++ + A+E
Sbjct: 313 SQSADDKRFLILETNYKIYAYTSNELEIAILNLFVDIRIRYPNLVVGKLDRQHVKAAMEK 372
Query: 232 GLTAEQ------QNAHPRVADRIPSVLE-NVCDQIRLWESDLNRVEMTPAHYYDEFPSRE 284
G++A Q +AHP++ + P +L + DQ+ LW+ + NR++ Y EF S+E
Sbjct: 373 GISAGQIIAYLSSHAHPQMYNSPPPLLHPTIVDQLHLWDRERNRLQTEETVMY-EFFSKE 431
>gi|321265552|ref|XP_003197492.1| subunit of TFIIH and nucleotide excision repair factor 3 complexes
[Cryptococcus gattii WM276]
gi|317463972|gb|ADV25705.1| Subunit of TFIIH and nucleotide excision repair factor 3 complexes,
putative [Cryptococcus gattii WM276]
Length = 481
Score = 91.3 bits (225), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 77/298 (25%), Positives = 135/298 (45%), Gaps = 47/298 (15%)
Query: 26 LPTLEDLEAYAIGQWERFLLQLISSAQA---------ERSINFCSSTMKVFQRGLLIQRD 76
LP+ ++L AY +E L ++SS + ++ + G + +R+
Sbjct: 142 LPSKDELVAYGEETFESILKYMVSSGLGTEFSGSRPQPEVLQLLHASGLMTDPGDMSRRN 201
Query: 77 KEAPRLT--ESGFQFLLMDTNAQLWYIVREYISNSQHDSMLAYERGINQADLISFLLELS 134
RLT GFQFLL QLW I+ Y+S + +S ER ++++S L
Sbjct: 202 PNIYRLTITSKGFQFLLEKRQTQLWEILMYYLSAKEANS----ERS---SEVLSMFFSLG 254
Query: 135 FHVAGEAYNLKTLSEIQRSMIKDFADLGLVKLQQGRKESWFIPTIADSL----------- 183
G+ Y+ + + D A G + + ++ +A SL
Sbjct: 255 CMQLGQDYSASNSFPHAQEALNDLAQYGFIYKPSPDSDQFWPTHLATSLCSGDASAIQSQ 314
Query: 184 ----------ETNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKESLYNAVENGL 233
ETN+++YAY++++L IL LF I + PNL+VG + ++ + A+E G+
Sbjct: 315 SADDKRFLILETNYKIYAYTSNELEIAILNLFVDIRIRYPNLVVGKLDRQHVKAAMEKGI 374
Query: 234 TAEQ------QNAHPRVADRIPSVLE-NVCDQIRLWESDLNRVEMTPAHYYDEFPSRE 284
+A Q +AHP++ + P +L + DQ+ LW+ + NR++ Y EF S+E
Sbjct: 375 SARQIIAYLSSHAHPQMYNSPPPLLHPTIVDQLHLWDRERNRLQTEETVMY-EFFSKE 431
>gi|85691005|ref|XP_965902.1| hypothetical protein ECU01_0670 [Encephalitozoon cuniculi GB-M1]
gi|19068469|emb|CAD24937.1| hypothetical protein [Encephalitozoon cuniculi GB-M1]
gi|449329766|gb|AGE96035.1| hypothetical protein ECU01_0670 [Encephalitozoon cuniculi]
Length = 414
Score = 90.5 bits (223), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 71/242 (29%), Positives = 113/242 (46%), Gaps = 35/242 (14%)
Query: 65 KVFQRGLLIQRDKEAPRLTESGFQFLLMDTNAQLWYIVR---EYISNSQHDSMLAYERGI 121
+V G L+ RD+ +T GF+FLL QLW +V +Y S + + E
Sbjct: 153 EVLMFGGLLGRDRN---ITNRGFEFLLKTKKEQLWCLVLLSLKYFLGSVEEEIAVLEA-- 207
Query: 122 NQADLISFLLELSFHVAGEAYNLKTLSEIQRSMIKDFADLGLVKLQQ-----GRKESWFI 176
L ELS G Y + + ++ R + K LG+++L + GR F+
Sbjct: 208 --------LFELSARAVGTVY--RQVDQMDRRLFKYLEALGILRLYEKGLAIGRS---FV 254
Query: 177 PTIADS---------LETNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKESLYN 227
S +ETN ++YAY+ S+ ++ LF + LPNLI G IT+ES+
Sbjct: 255 QLFEASERNRREFIIVETNNKIYAYTNSEYEKSVIHLFCNVTVNLPNLIKGIITEESVNV 314
Query: 228 AVENGLTAEQQNAHPRVADRIPSVLENVCDQIRLWESDLNRVEMTPAHYYDEFPSREDSK 287
A + G+T +Q + R S+ + +QI +WES NR+ M P + Y F + D +
Sbjct: 315 AFDKGITGKQIIHFLEASVRQGSLPPAIRNQIVIWESKRNRIFMVPGYLYSNFLNLSDYQ 374
Query: 288 KM 289
K+
Sbjct: 375 KV 376
>gi|323455511|gb|EGB11379.1| hypothetical protein AURANDRAFT_52511 [Aureococcus anophagefferens]
Length = 291
Score = 90.5 bits (223), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 65/228 (28%), Positives = 108/228 (47%), Gaps = 50/228 (21%)
Query: 82 LTESGFQFLLMDTNAQLWYIVREYISNSQHDSMLAYERGINQADLISFLLELSFHVAGEA 141
+T G FLL + + Q+W +V EYI + G + ++++ +L L++ GE
Sbjct: 12 VTGRGVDFLLKERHEQVWALVDEYIRAA----------GDAKGEVVALVLTLAYATPGEG 61
Query: 142 YNLKTLSEIQRSMIKDFADLGLVKLQQGRKESWFIPT----------------------- 178
Y + LSE Q++ + LGLV ++ S F PT
Sbjct: 62 YAIHELSEAQKAALDVLFALGLV-YRRNASSSRFYPTTLGVDVAFGARRSAGGARAGGDF 120
Query: 179 ---IADSLETNFRMYAYS-----TSKLHCEILRLFSKIEYQLPNLIVGAITKESLYNAVE 230
+ ++TNF++ AY+ TS L L LF+++ +LPNL+VG I+++++ V+
Sbjct: 121 RRPVDVIVQTNFQVLAYTDAGVNTSTLVLATLNLFAELTTRLPNLVVGTISRDAIKRCVD 180
Query: 231 NGLTAEQ------QNAHPRVADRIPSVLENVCDQIRLWESDLNRVEMT 272
G+ Q +AHP A + V +NV DQ+ LW + NRV T
Sbjct: 181 RGIRVPQIVKFLRAHAHP--AMKASGVPQNVTDQMALWAGEGNRVAFT 226
>gi|432098035|gb|ELK27922.1| General transcription factor IIH subunit 4 [Myotis davidii]
Length = 377
Score = 90.1 bits (222), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 63/217 (29%), Positives = 107/217 (49%), Gaps = 63/217 (29%)
Query: 89 FLLMDTNAQLWYIVREYISNSQHDSMLAYERGINQADLISFLLELSFHVAGEAYNLKTLS 148
FLL+DT AQLWY + +++ +Q RG++ +++SFL +LSF G+ Y+++ +S
Sbjct: 159 FLLLDTPAQLWYFMLQHLQTAQ-------SRGMDLVEILSFLFQLSFSSLGKDYSVEGMS 211
Query: 149 EIQRSMIKDFADLGLVKLQQGRKESWFIPT-IADSL-------------------ETNFR 188
+ +R + GLV Q+ RK + PT +A SL ETN++
Sbjct: 212 DSRR-------EFGLV-FQRKRKSRRYYPTRLAISLSSGVSGAGGTAHQPGFIVVETNYQ 263
Query: 189 MYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKESLYNAVENGLTAEQQNAHPRVADRI 248
+YAY+ S+L ++ LFS++ Y+ PN++V +
Sbjct: 264 LYAYTESELQIALIALFSEMLYRFPNMVVA----------------------------QT 295
Query: 249 PSVLENVCDQIRLWESDLNRVEMTPAHYYDEFPSRED 285
P + + DQIRLWE + +R+ T Y++F S+ D
Sbjct: 296 PVLPPTITDQIRLWELERDRLLFTEGVLYNQFLSQVD 332
>gi|149031822|gb|EDL86757.1| rCG41794 [Rattus norvegicus]
Length = 209
Score = 90.1 bits (222), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 41/109 (37%), Positives = 70/109 (64%), Gaps = 6/109 (5%)
Query: 183 LETNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKESLYNAVENGLTAEQ----- 237
+ETN+R+YAY+ S+L ++ LFS++ Y+ PN++V +T+ES+ A+ +G+TA+Q
Sbjct: 56 VETNYRLYAYTESELQIALIALFSEMLYRFPNMVVAQVTRESVQQAIASGITAQQIIHFL 115
Query: 238 -QNAHPRVADRIPSVLENVCDQIRLWESDLNRVEMTPAHYYDEFPSRED 285
AHP + + P + + DQIRLWE + +R+ T Y++F S+ D
Sbjct: 116 RTRAHPVMLKQTPVLPPTITDQIRLWELERDRLRFTEGVLYNQFLSQVD 164
>gi|170589001|ref|XP_001899262.1| Transcription factor Tfb2 family protein [Brugia malayi]
gi|158593475|gb|EDP32070.1| Transcription factor Tfb2 family protein [Brugia malayi]
Length = 465
Score = 89.4 bits (220), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 85/315 (26%), Positives = 146/315 (46%), Gaps = 69/315 (21%)
Query: 30 EDLEAYAIGQWERFLLQL-ISSAQAERSINFCSSTMKVFQRGLLIQ--RDKEAPRLTESG 86
+DL A+ +WE L L + S ++E+ ++ +T ++F+ L D +T +G
Sbjct: 114 KDLGKKAVERWECILHYLALPSQKSEQGVS--GTTKRLFRSAGLTSSGNDDGDIEITSAG 171
Query: 87 FQFLLMDTNAQLWYIVREYISNSQHDSMLAYERGINQADLISFLLELSFHVAGEAYNLKT 146
FQFLL++ Q+W + Y H +A GI+ + FL +L+ + +
Sbjct: 172 FQFLLLNRPEQIWTYLLHYF----HMQEVA---GIDIVKELDFLFKLTLYSGSTCGGTRV 224
Query: 147 L--SEIQR--------------SMIKDFA----DLGLVKLQQGRKESWFIPT-------- 178
+ S+ +R IKDF +LGLV +++ RK+ +F T
Sbjct: 225 VNGSDKERPTGSRAFIIDENWPETIKDFLMHLRELGLVFIRK-RKDGFFFLTPLLNHLTG 283
Query: 179 IADS---------------LETNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKE 223
I+++ +ETN+R+YAY+ S L IL F+++ Y+ ++ VG +++E
Sbjct: 284 ISNTSEAGMENRNQNGFVIVETNYRVYAYTDSNLQLAILSTFTEMLYRFSDMSVGVLSRE 343
Query: 224 SLYNAVENGLTAEQ------QNAHP-------RVADRIPSVLENVCDQIRLWESDLNRVE 270
++ A + G+TA Q +NAHP I SV V DQI+LWE + R+
Sbjct: 344 AVRRAFQVGITAAQIIAFLSRNAHPITCAVTTEYGRMIQSVPITVVDQIQLWEDERRRLT 403
Query: 271 MTPAHYYDEFPSRED 285
A Y F S ++
Sbjct: 404 FCSAAVYSSFESEKE 418
>gi|58262306|ref|XP_568563.1| hypothetical protein CNN01190 [Cryptococcus neoformans var.
neoformans JEC21]
gi|57230737|gb|AAW47046.1| hypothetical protein CNN01190 [Cryptococcus neoformans var.
neoformans JEC21]
Length = 481
Score = 89.4 bits (220), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 80/299 (26%), Positives = 135/299 (45%), Gaps = 49/299 (16%)
Query: 26 LPTLEDLEAYAIGQWERFLLQLISSAQAERSINFCSSTMKVFQ----RGLLIQ------R 75
LP+ ++L AY +E L ++SS + +V Q GL+ R
Sbjct: 142 LPSEDELVAYGEDTFESILKYMVSSGLGTE-FSGSRPQPEVLQLLHTSGLMTDSVDMNGR 200
Query: 76 DKEAPRLT--ESGFQFLLMDTNAQLWYIVREYISNSQHDSMLAYERGINQADLISFLLEL 133
+ RLT GFQFLL QLW I+ Y+S + +S ER ++++S L
Sbjct: 201 NPNINRLTITSKGFQFLLEKRQTQLWEILMYYLSAKEANS----ERS---SEVLSMFFSL 253
Query: 134 SFHVAGEAYNLKTLSEIQRSMIKDFADLGLVKLQQGRKESWFIPTIADSL---------- 183
G+ Y+ + + D A G + + ++ +A SL
Sbjct: 254 GCMQLGQDYSASNSFPGAQEALDDLAQYGFIYKSSPDSDQFWPTHLATSLCSGDASAIQS 313
Query: 184 -----------ETNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKESLYNAVENG 232
ETN+++YAY++++L IL LF I + PNL+VG + ++ + A+E G
Sbjct: 314 QSADDKRFLILETNYKIYAYTSNELEIAILNLFVDIRIRYPNLVVGKLDRQHVKAAMEKG 373
Query: 233 LTAEQ------QNAHPRVADRIPSVLE-NVCDQIRLWESDLNRVEMTPAHYYDEFPSRE 284
++A Q +AHP++ + P +L + DQ+ LW+ + NR++ Y EF S+E
Sbjct: 374 ISARQIIAYLSSHAHPQMYNSPPPLLHPTIVDQLYLWDRERNRLQTEETVMY-EFFSKE 431
>gi|134118870|ref|XP_771938.1| hypothetical protein CNBN1180 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|50254542|gb|EAL17291.1| hypothetical protein CNBN1180 [Cryptococcus neoformans var.
neoformans B-3501A]
Length = 481
Score = 89.4 bits (220), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 80/299 (26%), Positives = 135/299 (45%), Gaps = 49/299 (16%)
Query: 26 LPTLEDLEAYAIGQWERFLLQLISSAQAERSINFCSSTMKVFQ----RGLLIQ------R 75
LP+ ++L AY +E L ++SS + +V Q GL+ R
Sbjct: 142 LPSEDELVAYGEDTFESILKYMVSSGLGTE-FSGSRPQPEVLQLLHTSGLMTDSVDMNGR 200
Query: 76 DKEAPRLT--ESGFQFLLMDTNAQLWYIVREYISNSQHDSMLAYERGINQADLISFLLEL 133
+ RLT GFQFLL QLW I+ Y+S + +S ER ++++S L
Sbjct: 201 NPNINRLTITSKGFQFLLEKRQTQLWEILMYYLSAKEANS----ERS---SEVLSMFFSL 253
Query: 134 SFHVAGEAYNLKTLSEIQRSMIKDFADLGLVKLQQGRKESWFIPTIADSL---------- 183
G+ Y+ + + D A G + + ++ +A SL
Sbjct: 254 GCMQLGQDYSASNSFPGAQEALDDLAQYGFIYKSSPDSDQFWPTHLATSLCSGDASAIQS 313
Query: 184 -----------ETNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKESLYNAVENG 232
ETN+++YAY++++L IL LF I + PNL+VG + ++ + A+E G
Sbjct: 314 QSADDKRFLILETNYKIYAYTSNELEIAILNLFVDIRIRYPNLVVGKLDRQHVKAAMEKG 373
Query: 233 LTAEQ------QNAHPRVADRIPSVLE-NVCDQIRLWESDLNRVEMTPAHYYDEFPSRE 284
++A Q +AHP++ + P +L + DQ+ LW+ + NR++ Y EF S+E
Sbjct: 374 ISARQIIAYLSSHAHPQMYNSPPPLLHPTIVDQLYLWDRERNRLQTEETVMY-EFFSKE 431
>gi|324512881|gb|ADY45318.1| General transcription factor IIH subunit 4 [Ascaris suum]
Length = 481
Score = 87.8 bits (216), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 88/345 (25%), Positives = 154/345 (44%), Gaps = 80/345 (23%)
Query: 24 ARLPTLEDLEAYAIGQWERFLLQL-ISSAQAERSINFCSSTMKVFQR-GLLIQRDKEAP- 80
+R +DL A +WE L L + S ++E+ ++ +T ++F+ GL + E
Sbjct: 125 SRKSASKDLGKKATERWECILHYLALPSQKSEQGVS--GATKQLFRAAGLTSGGESEGDM 182
Query: 81 RLTESGFQFLLMDTNAQLWYIVREYISNSQHDSMLAYERGINQADLISFLLELSFHVAGE 140
+T +GFQFLL++ Q+W + Y+ L G N + FLL+L+ V
Sbjct: 183 EITSAGFQFLLLNQTEQIWMYILHYLR-------LEESMGKNVMAELDFLLKLTLCVDHT 235
Query: 141 AYNLK---------------------TLSEIQRSMIKDFADLGLVKLQQGRKESWFIP-- 177
N + + SE + + +LGLV +++ + +FI
Sbjct: 236 HTNGRLRVVDGDREKKATWRAFFIDESWSETITNFLMHLRELGLVFIRKRKDGYFFITPL 295
Query: 178 ----TIADS----------------LETNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIV 217
T++ S +ETN+R+YAY+ S L IL F+++ Y+ ++ V
Sbjct: 296 FAHLTVSSSSETAVAEKRTHSGYIIVETNYRVYAYTDSSLQLAILSTFTEMLYRFNDMSV 355
Query: 218 GAITKESLYNAVENGLTAEQ------QNAHPRV---ADRIPSVLE----NVCDQIRLWES 264
G +T++S+ A++ G+TA Q NAHP A+ P V+ V DQIRLWE
Sbjct: 356 GMLTRDSVRRALQVGITASQIISFLRANAHPETVAAANASPGVIHCVPVTVADQIRLWED 415
Query: 265 DLNRVEMTPAHYYDEFPSREDSKKMRLVVNAEIHMHMREFLRGQN 309
+ +R+ + Y F S + ++ ++E+ R Q+
Sbjct: 416 ERHRLVFFDSALYSTFESERE------------YVGVKEYTRSQD 448
>gi|303388087|ref|XP_003072278.1| RNA polymerase II transcription initiation/nucleotide excision
repair factor TFIIH subunit TFB2 [Encephalitozoon
intestinalis ATCC 50506]
gi|303301417|gb|ADM10918.1| RNA polymerase II transcription initiation/nucleotide excision
repair factor TFIIH subunit TFB2 [Encephalitozoon
intestinalis ATCC 50506]
Length = 414
Score = 87.8 bits (216), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 75/281 (26%), Positives = 127/281 (45%), Gaps = 61/281 (21%)
Query: 65 KVFQRGLLIQRDKEAPRLTESGFQFLLMDTNAQLWYIVR---EYISNSQHDSMLAYERGI 121
+V G L+ RD+ +T GF+FLL QLW +V +Y S + + E
Sbjct: 153 EVLMFGGLLGRDEN---ITNRGFEFLLKTKKEQLWCLVLLSLKYFLKSVEEEVSTLEA-- 207
Query: 122 NQADLISFLLELSFHVAGEAYNLKTLSEIQRSMIKDFADLGLVKL--------------- 166
+ ELS G Y + S + + ++K LG++KL
Sbjct: 208 --------IFELSTKNVGTVY--RHSSSMDKRLLKYLEVLGILKLYGENLAIRRSFVQLF 257
Query: 167 ---QQGRKESWFIPTIADSLETNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKE 223
++ R+E FI +ETN ++YAY+ S+ ++ LF + + LPNL G+IT+E
Sbjct: 258 EASERNRRE--FII-----VETNNKIYAYTNSEYEKSVIHLFCNVSFNLPNLTKGSITEE 310
Query: 224 SLYNAVENGLTAEQQNAHPRVADRIPSVLENVCDQIRLWESDLNRVEMTPAHYYDEFPSR 283
S+ A + G+T Q + + S+ + +QI +WES NR+ M P + Y F +
Sbjct: 311 SVNAAFDKGITGRQIIHFLEASSKPGSLPPAIINQIIIWESKRNRIFMAPGYLYSNFLNL 370
Query: 284 EDSKKM------------------RLVVNAEIHMHMREFLR 306
D +K+ +VVN + H+ ++EF++
Sbjct: 371 SDYQKVLEFCSERNYLIESDIDRRMIVVNPKGHVFVKEFIK 411
>gi|393910938|gb|EFO26137.2| transcription factor Tfb2 family protein [Loa loa]
Length = 486
Score = 87.0 bits (214), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 82/325 (25%), Positives = 145/325 (44%), Gaps = 67/325 (20%)
Query: 30 EDLEAYAIGQWERFLLQL-ISSAQAERSINFCSSTMKVFQRGLLI--QRDKEAPRLTESG 86
+DL A+ +WE L L + S ++E+ ++ +T ++F+ L + D +T +G
Sbjct: 135 KDLGKKAVERWECILHYLALPSQKSEQGVS--GTTKRLFRSAGLTSSENDDGDIEITSAG 192
Query: 87 FQFLLMDTNAQLWYIVREYISNSQHDSMLAYERGINQADLISFLLELSFHVAGEAYNLKT 146
FQFLL++ + Q+W + Y H +A GI+ + FL L+ + + +
Sbjct: 193 FQFLLLNRSEQIWTYLLYYF----HMQEVA---GIDIIKELDFLFRLTLYSGDTSGGTRV 245
Query: 147 ----------------LSEIQRSMIKDFA----DLGLVKLQQGRKESWFIPTIADSL--- 183
+ E KDF +LGLV +++ + +F+ + + L
Sbjct: 246 TNGSDKERPAGSRAFLIDECWPEPTKDFLMHLRELGLVFIRKRKDGFFFLTPLLNHLTSI 305
Query: 184 -------------------ETNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKES 224
ETN+R+YAY+ S L IL F+++ Y+ ++ VG +++E+
Sbjct: 306 SYASETGIENRNQNGFVIVETNYRVYAYTDSNLQLAILSTFTEMLYRFNDMSVGVLSREA 365
Query: 225 LYNAVENGLTAEQ------QNAHPRV-------ADRIPSVLENVCDQIRLWESDLNRVEM 271
+ A + G+TA Q NAHP I SV V DQIRLWE + R+
Sbjct: 366 VRRAFQVGITAAQIIAFLRANAHPTTYAVTTEYGGMIQSVPITVADQIRLWEDERRRLMF 425
Query: 272 TPAHYYDEFPSREDSKKMRLVVNAE 296
A Y F S ++ ++ V+++
Sbjct: 426 CNAAVYSSFESEKEYFGLKGYVSSQ 450
>gi|393910939|gb|EJD76097.1| transcription factor Tfb2 family protein, variant [Loa loa]
Length = 389
Score = 87.0 bits (214), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 82/325 (25%), Positives = 145/325 (44%), Gaps = 67/325 (20%)
Query: 30 EDLEAYAIGQWERFLLQL-ISSAQAERSINFCSSTMKVFQRGLLI--QRDKEAPRLTESG 86
+DL A+ +WE L L + S ++E+ ++ +T ++F+ L + D +T +G
Sbjct: 38 KDLGKKAVERWECILHYLALPSQKSEQGVS--GTTKRLFRSAGLTSSENDDGDIEITSAG 95
Query: 87 FQFLLMDTNAQLWYIVREYISNSQHDSMLAYERGINQADLISFLLELSFHVAGEAYNLKT 146
FQFLL++ + Q+W + Y H +A GI+ + FL L+ + + +
Sbjct: 96 FQFLLLNRSEQIWTYLLYYF----HMQEVA---GIDIIKELDFLFRLTLYSGDTSGGTRV 148
Query: 147 ----------------LSEIQRSMIKDFA----DLGLVKLQQGRKESWFIPTIADSL--- 183
+ E KDF +LGLV +++ + +F+ + + L
Sbjct: 149 TNGSDKERPAGSRAFLIDECWPEPTKDFLMHLRELGLVFIRKRKDGFFFLTPLLNHLTSI 208
Query: 184 -------------------ETNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKES 224
ETN+R+YAY+ S L IL F+++ Y+ ++ VG +++E+
Sbjct: 209 SYASETGIENRNQNGFVIVETNYRVYAYTDSNLQLAILSTFTEMLYRFNDMSVGVLSREA 268
Query: 225 LYNAVENGLTAEQ------QNAHPRV-------ADRIPSVLENVCDQIRLWESDLNRVEM 271
+ A + G+TA Q NAHP I SV V DQIRLWE + R+
Sbjct: 269 VRRAFQVGITAAQIIAFLRANAHPTTYAVTTEYGGMIQSVPITVADQIRLWEDERRRLMF 328
Query: 272 TPAHYYDEFPSREDSKKMRLVVNAE 296
A Y F S ++ ++ V+++
Sbjct: 329 CNAAVYSSFESEKEYFGLKGYVSSQ 353
>gi|358333989|dbj|GAA34589.2| transcription initiation factor TFIIH subunit 4 [Clonorchis
sinensis]
Length = 456
Score = 86.7 bits (213), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 46/114 (40%), Positives = 66/114 (57%), Gaps = 6/114 (5%)
Query: 183 LETNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKESLYNAVENGLTAEQ----- 237
LETNFR+YAY+ S L +L LFSKI + PNL+V IT++S+ A+ G+TA+Q
Sbjct: 304 LETNFRLYAYTDSPLRTALLSLFSKIRARFPNLVVADITRDSVREALIRGITADQIISFL 363
Query: 238 -QNAHPRVADRIPSVLENVCDQIRLWESDLNRVEMTPAHYYDEFPSREDSKKMR 290
NAHP + P + + DQIRLWE + +R Y++F D + +R
Sbjct: 364 TTNAHPDMLREPPILPPTLVDQIRLWELERDRFVFQEGCLYEQFSKSADFEMVR 417
>gi|401825125|ref|XP_003886658.1| RNA polymerase II transcription initiation/nucleotide excision
repair factor TFIIH subunit TFB2 [Encephalitozoon hellem
ATCC 50504]
gi|395459803|gb|AFM97677.1| RNA polymerase II transcription initiation/nucleotide excision
repair factor TFIIH subunit TFB2 [Encephalitozoon hellem
ATCC 50504]
Length = 414
Score = 86.7 bits (213), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 78/277 (28%), Positives = 122/277 (44%), Gaps = 53/277 (19%)
Query: 65 KVFQRGLLIQRDKEAPRLTESGFQFLLMDTNAQLWYIVR---EYISNSQHDSMLAYERGI 121
+V G L+ +D+ +T GF+FLL QLW +V +Y S + + A E
Sbjct: 153 EVLMFGGLLGKDR---NITNRGFEFLLKTKKEQLWCLVLLSLKYFLGSVDEEIHALEA-- 207
Query: 122 NQADLISFLLELSFHVAGEAYNLKTLSEIQRSMIKDFADLGLVKLQQGRKESW-----FI 176
L ELS G AY+ + ++K LG++KL KES F+
Sbjct: 208 --------LFELSTKAVGIAYH--RTDRMDARLLKYLEALGILKLY---KESLAIGKSFV 254
Query: 177 PTIADS---------LETNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKESLYN 227
S +ETN ++YAY+ S+ ++ LF + LPNLI G+IT+ES+
Sbjct: 255 QLFEASERNRREFIIVETNNKIYAYTNSEYEKSVIHLFCSVSVNLPNLIKGSITEESVNV 314
Query: 228 AVENGLTAEQQNAHPRVADRIPSVLENVCDQIRLWESDLNRVEMTPAHYYDEFPS----- 282
A + G+T +Q + + S+ + QI +WES NR+ M P + Y F +
Sbjct: 315 AFDKGITGKQIIHFLEASVKPGSLPPAISSQIMIWESKRNRIFMAPGYIYSNFLNLSDYQ 374
Query: 283 -------------REDSKKMRLVVNAEIHMHMREFLR 306
D K +VV E H ++EF++
Sbjct: 375 RVLEFCTERSYLIESDVDKRMIVVKVEGHELVKEFIK 411
>gi|312069992|ref|XP_003137940.1| transcription factor Tfb2 family protein [Loa loa]
Length = 470
Score = 86.3 bits (212), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 82/312 (26%), Positives = 143/312 (45%), Gaps = 54/312 (17%)
Query: 30 EDLEAYAIGQWERFLLQL-ISSAQAERSINFCSSTMKVFQRGLLI--QRDKEAPRLTESG 86
+DL A+ +WE L L + S ++E+ ++ +T ++F+ L + D +T +G
Sbjct: 132 KDLGKKAVERWECILHYLALPSQKSEQGVS--GTTKRLFRSAGLTSSENDDGDIEITSAG 189
Query: 87 FQFLLMDTNAQLWYIVREYISNSQHDSMLAYERGINQADLISFLLELSFHVAGE---AYN 143
FQFLL++ + Q+W + Y H +A GI+ + FL ++ E
Sbjct: 190 FQFLLLNRSEQIWTYLLYYF----HMQEVA---GIDIIKELDFLFRVTNGSDKERPAGSR 242
Query: 144 LKTLSEIQRSMIKDFA----DLGLVKLQQGRKESWFIPTIADSL---------------- 183
+ E KDF +LGLV +++ + +F+ + + L
Sbjct: 243 AFLIDECWPEPTKDFLMHLRELGLVFIRKRKDGFFFLTPLLNHLTSISYASETGIENRNQ 302
Query: 184 ------ETNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKESLYNAVENGLTAEQ 237
ETN+R+YAY+ S L IL F+++ Y+ ++ VG +++E++ A + G+TA Q
Sbjct: 303 NGFVIVETNYRVYAYTDSNLQLAILSTFTEMLYRFNDMSVGVLSREAVRRAFQVGITAAQ 362
Query: 238 ------QNAHPRV-------ADRIPSVLENVCDQIRLWESDLNRVEMTPAHYYDEFPSRE 284
NAHP I SV V DQIRLWE + R+ A Y F S +
Sbjct: 363 IIAFLRANAHPTTYAVTTEYGGMIQSVPITVADQIRLWEDERRRLMFCNAAVYSSFESEK 422
Query: 285 DSKKMRLVVNAE 296
+ ++ V+++
Sbjct: 423 EYFGLKGYVSSQ 434
>gi|300707677|ref|XP_002996037.1| hypothetical protein NCER_100934 [Nosema ceranae BRL01]
gi|239605297|gb|EEQ82366.1| hypothetical protein NCER_100934 [Nosema ceranae BRL01]
Length = 403
Score = 85.5 bits (210), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 64/245 (26%), Positives = 117/245 (47%), Gaps = 20/245 (8%)
Query: 53 AERSINFCSSTMKVFQRGLLIQRDKEAPRLTESGFQFLLMDTNAQLWYIVREYISNSQHD 112
+ ++N + V + LI + + +T GF+FLL Q W+++ + D
Sbjct: 131 TKNNVNHAPGVVNVLKFSNLIDNNYD---ITNKGFEFLLKPRYDQYWFLIIAALKFYCVD 187
Query: 113 SMLAYERGINQADLISFLLELSFHVAGEAYNLKTLSEIQRSMIKDFADLGLVKLQQGRKE 172
+L ++ ++ELS + Y LK ++ + + LGL+KL+
Sbjct: 188 EILQISNFMS-------IMELSNMLPIYKYKLK--KDVNKKFYDFLSYLGLIKLENDILT 238
Query: 173 SW---FIPTIADSL-----ETNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKES 224
+ F+ + L ETNF++YAY++S I++LFS I ++PNLI +IT+ES
Sbjct: 239 IYHNLFVKSDTKKLRFILLETNFKLYAYTSSVYEMSIIQLFSNIYLKMPNLIKASITEES 298
Query: 225 LYNAVENGLTAEQQNAHPRVADRIPSVLENVCDQIRLWESDLNRVEMTPAHYYDEFPSRE 284
L NA G+T++Q + + + QI +WE+ R+++ P + Y F +
Sbjct: 299 LSNAFSKGVTSQQIINFLKSYSLFEDIPVAIISQIIIWETKRKRIKIFPGYLYSNFLNLI 358
Query: 285 DSKKM 289
D +K+
Sbjct: 359 DYQKV 363
>gi|402465832|gb|EJW01474.1| hypothetical protein EDEG_03937 [Edhazardia aedis USNM 41457]
Length = 465
Score = 85.5 bits (210), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 65/224 (29%), Positives = 107/224 (47%), Gaps = 27/224 (12%)
Query: 82 LTESGFQFLLMDTNAQLWYIVREYISNSQHDSMLAYERGINQADLISFLLELSFHVAGEA 141
+T +GF FLL QLW ++ I L I + D I + EL ++
Sbjct: 211 ITNTGFDFLLKTRKEQLWILLITTIK------YLKSTMKIEEKDFILLIFELCEKRPYKS 264
Query: 142 YNLKTLSEIQRSMIKDFADLGLVKLQQGRKESWFIPTIAD-----------------SLE 184
Y + ++ I + LGL L+ K + I +I+ +E
Sbjct: 265 YKIINCPSSIQTCINYMSKLGL--LENSIKNNTVILSISPLFINLFEENLVLSESFMYIE 322
Query: 185 TNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKESLYNAVENGLTAEQQNAHPRV 244
TNF++YAY+TSK IL LFSKI +LPNLI I ++S+ A + ++A+Q + + +
Sbjct: 323 TNFKLYAYTTSKYDFSILSLFSKISCKLPNLISAIINEDSVNTAFDKKISAKQISYYLKS 382
Query: 245 ADRIPSVLENVCDQIRLWESDLNRVEMTPAHYYDEFPSREDSKK 288
+ +V +NV +Q+ +WES NR++ + + F + D KK
Sbjct: 383 KGK--NVPKNVVEQVYIWESKRNRIKTSECTLFKGFLNLMDFKK 424
>gi|402592023|gb|EJW85952.1| transcription factor Tfb2 family protein [Wuchereria bancrofti]
Length = 470
Score = 84.7 bits (208), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 79/298 (26%), Positives = 134/298 (44%), Gaps = 48/298 (16%)
Query: 30 EDLEAYAIGQWERFLLQL-ISSAQAERSINFCSSTMKVFQRGLLIQ--RDKEAPRLTESG 86
+DL A+ +WE L L + S ++E+ ++ +T ++F+ L D +T +G
Sbjct: 132 KDLGKKAVERWECILHYLALPSQKSEQGVS--GTTKRLFRSAGLTSSGNDDGDIEITSAG 189
Query: 87 FQFLLMDTNAQLWYIVREYISNSQHDSMLAYERGINQADLISFLLELSFHVAGEAYNLKT 146
FQFLL++ Q+W + Y H +A I + D + ++ S
Sbjct: 190 FQFLLLNRPEQIWTYLLHYF----HMQEVAGIDIIKELDFLFKVVNDSDKERPAGSRAFV 245
Query: 147 LSEIQRSMIKDFA----DLGLVKLQQGRKESWFIPTIADSL------------------- 183
+ E IKDF +LGLV +++ + +F+ + + L
Sbjct: 246 IDENWPETIKDFLIHLRELGLVFIRKRKDGVFFLTPLLNHLTGISNTSEASMENRNQHGF 305
Query: 184 ---ETNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKESLYNAVENGLTAEQ--- 237
ETN+R+YAY+ S L IL F+++ Y+ ++ VG +++E++ A + G+TA Q
Sbjct: 306 VIVETNYRVYAYTDSNLQLAILSTFTEMLYRFNDMSVGVLSREAVRRAFQVGITAAQIIA 365
Query: 238 ---QNAHP-------RVADRIPSVLENVCDQIRLWESDLNRVEMTPAHYYDEFPSRED 285
NAHP I SV V DQI+LWE + R+ A Y F S ++
Sbjct: 366 FLSTNAHPITYAVTTEYGRMIQSVPITVADQIQLWEDERRRLTFCNATVYSSFESEKE 423
>gi|76154655|gb|AAX26095.2| SJCHGC05044 protein [Schistosoma japonicum]
Length = 214
Score = 82.8 bits (203), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 46/114 (40%), Positives = 64/114 (56%), Gaps = 6/114 (5%)
Query: 183 LETNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKESLYNAVENGLTAEQ----- 237
LETNFR+YAY+ S L +L LFSKI + PNL+V IT++S+ A+ G+TA Q
Sbjct: 62 LETNFRLYAYTDSPLRTALLSLFSKIRARFPNLVVADITRDSVREALIRGITANQILSFL 121
Query: 238 -QNAHPRVADRIPSVLENVCDQIRLWESDLNRVEMTPAHYYDEFPSREDSKKMR 290
NAHP + P + + DQIRLWE + +R Y+ F D + +R
Sbjct: 122 TSNAHPDMLLSNPILPPTLTDQIRLWELERDRFVFQEGCLYEHFSRNTDFELVR 175
>gi|403348380|gb|EJY73625.1| TFIIH and nucleotide excision repair factor 3 complexes subunit
[Oxytricha trifallax]
Length = 532
Score = 82.4 bits (202), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 65/245 (26%), Positives = 117/245 (47%), Gaps = 58/245 (23%)
Query: 32 LEAYAIGQWE---RFLLQLISSAQAERSINFCSSTMKVFQRGLLIQRDKEAP--RLTESG 86
L+ + +WE +F+L +I Q N S + + Q+ I+ D A +LT +G
Sbjct: 155 LDTASQTKWENISKFMLNIIPPQQ-----NTPKSLINLLQQARYIEFDVNAQTYQLTVNG 209
Query: 87 FQFLLMDTNAQLWYIVREYISNSQHDSMLAYERGINQADLISFLLELSFHVAGEAYNLKT 146
FQ++LMD +Q+ I+ YI ++ G N +++ F+ L+ N
Sbjct: 210 FQYILMDIASQVQNILLNYIQTAETS-------GRNVVEVLGFIFNLTLTEPNYDGN--- 259
Query: 147 LSEIQRSMIKDFADLGLVKLQQGRKESWFIPTIADS------------------------ 182
E S+++DF D+GLV ++ R++ + I ++ S
Sbjct: 260 --ENVNSILRDFDDMGLVGME--RRQKFVITSLLQSFLQSQTGQLQKSSDSSSSNVIDAQ 315
Query: 183 ----------LETNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKESLYNAVENG 232
+ETNF++YAY++S L+ +LR F ++E PNL+VG +T++SL A + G
Sbjct: 316 RSQSQDKFLIVETNFKVYAYTSSDLYRALLRQFIRVECIFPNLVVGTLTRKSLQKAFQRG 375
Query: 233 LTAEQ 237
+++ Q
Sbjct: 376 ISSGQ 380
>gi|397564488|gb|EJK44232.1| hypothetical protein THAOC_37249 [Thalassiosira oceanica]
Length = 971
Score = 82.0 bits (201), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 79/292 (27%), Positives = 136/292 (46%), Gaps = 57/292 (19%)
Query: 27 PTLEDLEAYAIGQWERFLLQLISSAQAER-SINFCS----STMKVFQRGLLIQRDKE--- 78
P+ +LEA+ QW+ L L+ S ++R +N + + R L+Q D +
Sbjct: 220 PSRRELEAHTQSQWDSVLHFLVGSDDSDRKGVNGIEEPNVAMVNFLTRIGLMQEDPDFTG 279
Query: 79 -----AP-RLTESGFQFLLMDTNAQLWYIVREYISNSQHDSMLAYERGINQADLISFLLE 132
AP +T G++F+L DTNAQ+W V +Y+++ H + + + + +SFL+
Sbjct: 280 KDRSRAPLVITSKGYEFMLRDTNAQVWQFVLQYLNSMAHHDL----KDTIRKEALSFLIC 335
Query: 133 LSFHVAGEAYNLKTL-SEIQRSMIKDFADLGLVKL----------------------QQG 169
L GE Y L S+ R ++KDFA GL+ + ++G
Sbjct: 336 LGSCRIGEGYFSSVLGSKSARVLMKDFARFGLLFVCRVAGKTAFYPTRVAVNLVASNEKG 395
Query: 170 --RKESWFIPTIADSLETNFRMYAYSTSKLHCEILRLFSKIEYQ-LPNLIVGAITKESLY 226
R+ +P++A + M A ++ H + I Y+ LPN++ +T++S+
Sbjct: 396 GSRQSDALLPSVAATRSLEEAMNAPDPTRSHLAV------ISYKRLPNVVFFHLTRDSIK 449
Query: 227 NAVENGLTAE------QQNAHPRV-ADRIPSVLENVCDQIRLWESDLNRVEM 271
+A G+TA+ Q +AHP + + P NV DQI LW+ + RV M
Sbjct: 450 SAFRLGVTADQILRFLQVHAHPMMRSGNQPMPPANVRDQILLWDRERRRVVM 501
>gi|396080769|gb|AFN82390.1| RNA polymerase II transcription initiation/nucleotide excision
repair factor TFIIH subunit TFB2 [Encephalitozoon
romaleae SJ-2008]
Length = 414
Score = 81.3 bits (199), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 75/277 (27%), Positives = 121/277 (43%), Gaps = 53/277 (19%)
Query: 65 KVFQRGLLIQRDKEAPRLTESGFQFLLMDTNAQLWYIVR---EYISNSQHDSMLAYERGI 121
+V G L+++D+ +T GF+FLL QLW +V +Y S + + A E
Sbjct: 153 EVLMFGGLLRKDRN---ITNRGFEFLLKTKKEQLWCLVLLSLKYFLRSVEEEIYALEA-- 207
Query: 122 NQADLISFLLELSFHVAGEAYNLKTLSEIQRSMIKDFADLGLVK-----LQQGRKESWFI 176
L ELS A++ + ++K LG+++ L GR F+
Sbjct: 208 --------LFELSTKTIETAHHQD--GRMDGRLLKYLEALGILRVCGERLAIGRS---FV 254
Query: 177 PTIADS---------LETNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKESLYN 227
S +ETN ++YAY+ S+ ++ LF + LPNLI G+IT+ES+
Sbjct: 255 QLFEASERNRREFIIVETNNKIYAYTNSEYEKSVIHLFCNVSVSLPNLIKGSITEESVNV 314
Query: 228 AVENGLTAEQQNAHPRVADRIPSVLENVCDQIRLWESDLNRVEMTPAHYYDEFPS----- 282
A + G+T +Q + + S+ + QI +WES NR+ M P + Y F +
Sbjct: 315 AFDKGITGKQIIHFLEASVKPGSLPPAITSQIMIWESKRNRIFMVPGYIYSNFLNLSDYQ 374
Query: 283 -------------REDSKKMRLVVNAEIHMHMREFLR 306
D K +VV E H +REF++
Sbjct: 375 RVLEFCTERSYLIESDVGKRMIVVKLEGHELVREFIK 411
>gi|378754852|gb|EHY64880.1| hypothetical protein NERG_01936 [Nematocida sp. 1 ERTm2]
Length = 396
Score = 79.3 bits (194), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 61/218 (27%), Positives = 104/218 (47%), Gaps = 31/218 (14%)
Query: 82 LTESGFQFLLMDTNAQLWYIV----REYISNSQHDSMLAYERGINQADLISFLLELSFHV 137
LT GF FLL Q+W +V +E ++ Q + ++ E + + + +++S+
Sbjct: 153 LTHKGFNFLLTGRKNQMWTLVLAHIQEDLATRQEEVLVMCEFLVKDPKRM-YAIDVSY-- 209
Query: 138 AGEAYNLKTLSEIQRSMIKDFADLGLVKLQQG--RKESWFIPTIAD--------SLETNF 187
+ M+ F LGL+ ++G R S F D +LE+NF
Sbjct: 210 -------------RSKMLDLFESLGLITFERGLVRFSSTFSLLFDDEEGGEKFLTLESNF 256
Query: 188 RMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKESLYNAVENGLTAEQQNAHPRVADR 247
R+Y YS L I+ LFS + PN+IV I ++S+ A+ G+TA Q + +
Sbjct: 257 RLYIYSNRPLDVFIISLFSIKIREFPNMIVAMINEDSIRQALTYGITAGQIRVYLN-QNS 315
Query: 248 IPSVLENVCDQIRLWESDLNRVEMTPAHYYDEFPSRED 285
+ + ENV +QIRLWE +NR+ ++ + F + +D
Sbjct: 316 MHKINENVLEQIRLWEKRMNRIHAWESYIFSNFLNYKD 353
>gi|387595518|gb|EIJ93142.1| hypothetical protein NEPG_02098 [Nematocida parisii ERTm1]
Length = 398
Score = 77.8 bits (190), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 67/217 (30%), Positives = 103/217 (47%), Gaps = 29/217 (13%)
Query: 82 LTESGFQFLLMDTNAQLWYIVREYISNSQHDSMLAYERGINQADLISFLLELSFHVAGEA 141
LT GF FLL QLW ++ +I Q D A + I L EL
Sbjct: 155 LTHKGFNFLLTGKKRQLWTLLLAHI---QEDPETA-------ENEILVLCELLVKDPKRT 204
Query: 142 YNLKTLSEIQRS-MIKDFADLGLVKLQQGRKESWFIPTIA---DS---------LETNFR 188
Y + Q+S ++ F LGL+ ++G + F PT + D LE+NFR
Sbjct: 205 Y---AVDRSQKSKLLGLFESLGLIFFEKGLVK--FSPTFSLLFDDEEGAEKFLVLESNFR 259
Query: 189 MYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKESLYNAVENGLTAEQQNAHPRVADRI 248
+Y YS L I+ LFS + PN+IV I ++S+ A+ +G+TA Q + + +
Sbjct: 260 LYIYSNRPLDTFIISLFSIKSREFPNMIVAMINEDSIRQALMHGITAGQIRVYLN-QNSM 318
Query: 249 PSVLENVCDQIRLWESDLNRVEMTPAHYYDEFPSRED 285
+ ENV +QIRLWE +NR+ ++ + F + +D
Sbjct: 319 YEINENVIEQIRLWEKRMNRIHSWESYIFSNFLNYKD 355
>gi|47212202|emb|CAF90416.1| unnamed protein product [Tetraodon nigroviridis]
Length = 471
Score = 77.8 bits (190), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 69/279 (24%), Positives = 113/279 (40%), Gaps = 73/279 (26%)
Query: 2 NLWKHLINGG-ALPREPMPSGITARLPTLEDLEAYAIGQWERFLLQLISSAQAERSINFC 60
NL L+ GG A E G + L+ YA +WE L ++ S A S +
Sbjct: 140 NLKTALLGGGRAWAEEGGALGPDRHARDIGSLDRYATERWEVILHFMVGSPCAAVSQDL- 198
Query: 61 SSTMKVFQRGLLIQRDKEAPRLTESGFQFLLMDTNAQLWYIVREYISNSQHDSMLAYERG 120
+ GL+ E P +T +GFQFLL+DT +QLWY +Y+ +Q
Sbjct: 199 --AQLLVHAGLMKSEAGEPPYITSAGFQFLLLDTASQLWYFTLQYLKTAQD--------- 247
Query: 121 INQADLISFLLELSFHVAGEAYNLKTLSEIQRSMIKDFADLGLVKLQQGRKESWFIPTIA 180
Y+++ +S+ + ++ + GLV
Sbjct: 248 ---------------------YSVEGMSDSLLTFLQHLREFGLV---------------- 270
Query: 181 DSLETNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKESLYNAVENGLTAEQQ-- 238
F+ A L Y+ PN++V +T+ES+ A+ NG+TA+Q+
Sbjct: 271 ------FQRKASGREML------------YRFPNVVVAQVTRESVQQAIANGITAQQRLT 312
Query: 239 ---NAHPRVADRIPSVLENVCDQIRLWESDLNRVEMTPA 274
+ P + P + + DQIRLWE + +R++ T A
Sbjct: 313 FDLWSSPTPLSQTPVLPPTITDQIRLWELERDRLQFTEA 351
>gi|320587960|gb|EFX00435.1| tfiih and nucleotide excision repair factor 3 complexes subunit
[Grosmannia clavigera kw1407]
Length = 518
Score = 77.4 bits (189), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 40/114 (35%), Positives = 66/114 (57%), Gaps = 11/114 (9%)
Query: 183 LETNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKESLYNAVENGLTAEQ----- 237
LETNFR+YAY+ S L +L LFSK+ + P ++ G +T++S+ A+ G+T++Q
Sbjct: 360 LETNFRLYAYTASPLQIAVLALFSKLSQRFPGMVAGKLTRDSVRRAISYGITSDQIISYL 419
Query: 238 -QNAHPRV-----ADRIPSVLENVCDQIRLWESDLNRVEMTPAHYYDEFPSRED 285
NAH ++ A+ P + V DQIRLWE + R++ + +F S ++
Sbjct: 420 AANAHEQMHKYAAANHRPVLPPTVVDQIRLWELENERMKSHKGFLFKDFDSAKE 473
Score = 58.9 bits (141), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 40/155 (25%), Positives = 74/155 (47%), Gaps = 10/155 (6%)
Query: 32 LEAYAIGQWERFLLQLISS-----AQAERSINFCSSTMKVFQRGLLIQRDKEAPR---LT 83
L+ +A +WE L +++S S ++ ++ G L++ P +T
Sbjct: 142 LDRFARRKWEDILHYVVNSVGLPSGPGHDSQGPKNTVKELLLAGHLVESRPGRPGGVGIT 201
Query: 84 ESGFQFLLMDTNAQLWYIVREYISNSQHDSMLAYERGINQADLISFLLELSFHVAGEAYN 143
++GF FLL NAQ+W ++ +++ D ++ D++SFL LS G AY+
Sbjct: 202 QTGFTFLLQAANAQVWTLLLQWLEAV--DQQRQAGGAVDSVDMLSFLFMLSTLELGRAYD 259
Query: 144 LKTLSEIQRSMIKDFADLGLVKLQQGRKESWFIPT 178
L+E +R+M+ D GL+ + + S + PT
Sbjct: 260 TNALTEARRNMLPSLMDFGLIYIPPHDRASQYFPT 294
>gi|429965574|gb|ELA47571.1| hypothetical protein VCUG_00894 [Vavraia culicis 'floridensis']
Length = 424
Score = 77.0 bits (188), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 81/296 (27%), Positives = 131/296 (44%), Gaps = 60/296 (20%)
Query: 63 TMKVFQRGLLIQRDKEAPRLTESGFQFLLMDTNAQLWYIVREYI---SNSQHD--SMLAY 117
+ V Q LI KE +T SGF+FLL + Q+W+++ I S D M+ +
Sbjct: 141 VLDVLQYAKLINVKKE---ITHSGFEFLLKNRKEQMWFLILNGILMLGKSYVDWLIMIVF 197
Query: 118 ERG---------INQADLISFLLELSFHVA----GEAYN--------LKTLSEIQRS--M 154
E G +N+A + + E S + GE + L L IQ S M
Sbjct: 198 EMGMYERYRWLKVNEAKIFCDVCEHSNNTGSVGGGEEGDILFRFLKYLSYLGIIQHSNDM 257
Query: 155 IKDFADLGLVKLQQGRKESWFIPTIADSLETNFRMYAYSTSKLHCEILRLFSKIEYQLPN 214
+K + L+ ++S+ + +ETN+++YAY+TS I++LF +I +LPN
Sbjct: 258 VKPTEEYFLLFSSASTQDSFLV------VETNYKLYAYTTSSHELSIIKLFCQIIRELPN 311
Query: 215 LIVGAITKESLYNAVENGLTAEQQNAHPRVADR--IPSVLENVCDQIRLWESDLNRVEMT 272
L+V IT+ES+ A G+T +Q + R +P V V +QI +WE +R++
Sbjct: 312 LVVAHITEESVNAAFVKGITGQQIVDYLNEKSRSELPVV---VLEQILIWERKRDRMKCM 368
Query: 273 PAHYYDEFPSRE------------------DSKKMRLVVNAEIHMHMREFLRGQNK 310
A Y F + D + LVV E H ++ F++ K
Sbjct: 369 DAVIYSHFMTYGEYEITYKYCKEKGALVDYDEFRRLLVVKLEYHNDVKNFIKSNIK 424
>gi|387592902|gb|EIJ87926.1| hypothetical protein NEQG_01998 [Nematocida parisii ERTm3]
Length = 398
Score = 76.6 bits (187), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 66/217 (30%), Positives = 103/217 (47%), Gaps = 29/217 (13%)
Query: 82 LTESGFQFLLMDTNAQLWYIVREYISNSQHDSMLAYERGINQADLISFLLELSFHVAGEA 141
LT GF FLL QLW ++ +I Q D A + I L EL
Sbjct: 155 LTHKGFNFLLTGKKRQLWTLLLAHI---QEDPETA-------ENEILVLCELLVKDPKRT 204
Query: 142 YNLKTLSEIQRS-MIKDFADLGLVKLQQGRKESWFIPTIA---DS---------LETNFR 188
Y + Q+S ++ F LGL+ ++G + F PT + D LE+NFR
Sbjct: 205 Y---AVDRSQKSKLLGLFESLGLIFFEKGLVK--FSPTFSLLFDDEEGAEKFLVLESNFR 259
Query: 189 MYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKESLYNAVENGLTAEQQNAHPRVADRI 248
+Y YS L I+ LFS + PN++V I ++S+ A+ +G+TA Q + + +
Sbjct: 260 LYIYSNRPLDTFIISLFSIKSREFPNMMVAMINEDSIRQALMHGITAGQIRVYLN-QNSM 318
Query: 249 PSVLENVCDQIRLWESDLNRVEMTPAHYYDEFPSRED 285
+ ENV +QIRLWE +NR+ ++ + F + +D
Sbjct: 319 YEINENVIEQIRLWEKRMNRIHSWESYIFSNFLNYKD 355
>gi|410082501|ref|XP_003958829.1| hypothetical protein KAFR_0H02850 [Kazachstania africana CBS 2517]
gi|372465418|emb|CCF59694.1| hypothetical protein KAFR_0H02850 [Kazachstania africana CBS 2517]
Length = 514
Score = 75.1 bits (183), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 49/148 (33%), Positives = 73/148 (49%), Gaps = 32/148 (21%)
Query: 157 DFADLGLVKLQQGRKESWFIPTIADSLETNFRMYAYSTSKLHCEILRLFSKIEYQLPNLI 216
D +GL Q+GR S I ETNF++Y+YS S L IL LF ++ + N++
Sbjct: 324 DIEQIGLEN-QEGRDGSLII-------ETNFKLYSYSNSPLQIAILSLFVHLKSRFVNMV 375
Query: 217 VGAITKESLYNAVENGLTAEQ------QNAHPRV------------------ADRIPSVL 252
G IT+ES+ A+ NG+TA+Q +AHPR+ D + +
Sbjct: 376 TGQITRESIRRALVNGITADQIIAYLETHAHPRMRRLAEEKLEKKLELDPNSKDTLQILP 435
Query: 253 ENVCDQIRLWESDLNRVEMTPAHYYDEF 280
V DQI+LW+ +L+RV Y +F
Sbjct: 436 PTVVDQIKLWQLELDRVITYDGSLYSDF 463
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 45/177 (25%), Positives = 91/177 (51%), Gaps = 10/177 (5%)
Query: 28 TLEDLEAYAIGQWERFLLQLISSAQAERSINFCSSTMKVFQRGLLIQRDKEAP-RLTESG 86
TL L+ Y+ +WE L ++ + A + + +K L+ + DK ++T G
Sbjct: 135 TLNFLDEYSANKWETILHFMVGTPLANIPSHNVLNLLK--NSRLMEEADKTGTLKITNEG 192
Query: 87 FQFLLMDTNAQLWYIVREYISNSQHDSMLAYERGINQADLISFLLELSFHVAGEAYNLKT 146
FQFLL + N+Q+W ++ +Y+ S+ M + ++++F+ L G+AY++
Sbjct: 193 FQFLLQEINSQIWTLLLQYLKMSESLQM-------DPVEVLNFIFMLGALEIGKAYSIDG 245
Query: 147 LSEIQRSMIKDFADLGLVKLQQGRKESWFIPTIADSLETNFRMYAYSTSKLHCEILR 203
L+E Q++M++DF D G++ + +S++ +A L ++ R + S +LR
Sbjct: 246 LTETQKTMLRDFRDYGIIFQKNLTSKSFYPTNLAIMLTSDTRSILRTASGAMDSVLR 302
>gi|365986883|ref|XP_003670273.1| hypothetical protein NDAI_0E02130 [Naumovozyma dairenensis CBS 421]
gi|343769043|emb|CCD25030.1| hypothetical protein NDAI_0E02130 [Naumovozyma dairenensis CBS 421]
Length = 522
Score = 74.7 bits (182), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 43/129 (33%), Positives = 68/129 (52%), Gaps = 24/129 (18%)
Query: 176 IPTIADSLETNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKESLYNAVENGLTA 235
+P + +ETNF++Y+YS S L IL LF ++++ N++ G IT+ES+ A+ NG+TA
Sbjct: 341 VPDGSLIVETNFKLYSYSNSPLQIAILSLFVHLKFRFVNMVTGQITRESIRRALINGITA 400
Query: 236 EQ------QNAHPRV------------------ADRIPSVLENVCDQIRLWESDLNRVEM 271
EQ +AHP++ D + + V DQIRLW+ +L+RV
Sbjct: 401 EQIIAYLETHAHPQMRRLAEEKLEKKLELDANCKDSLQILPPTVVDQIRLWQLELDRVIA 460
Query: 272 TPAHYYDEF 280
Y +F
Sbjct: 461 YEGSLYSDF 469
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 59/237 (24%), Positives = 104/237 (43%), Gaps = 36/237 (15%)
Query: 32 LEAYAIGQWERFLLQLISSAQAERSINFCSSTMKVFQRGLLIQRDKEAP--RLTESGFQF 89
L Y+ +WE L ++ + + S + + + L++ + ++T GFQF
Sbjct: 139 LNEYSANKWETILHFMVGTPMSSIP---SGSVLNLLKHTKLMEEVENTGEFKITNEGFQF 195
Query: 90 LLMDTNAQLWYIVREYISNSQHDSMLAYERGINQADLISFLLELSFHVAGEAYNLKTLSE 149
LL + N+QLW ++ +Y+ S+ +M + D+++F+ L G+ Y++ LSE
Sbjct: 196 LLQELNSQLWTLLLQYLKLSETLNM-------DPVDVLNFIFMLGALEVGKGYSIDGLSE 248
Query: 150 IQRSMIKDFADLGLVKLQQGRKESWFIPTIADSLETNFRMYAYSTSKLHCEILRLFSKIE 209
Q+ M+KD D GLV Q+ F P TN + S +K I+R S
Sbjct: 249 TQKIMLKDMRDYGLV-FQKVSNSKTFYP-------TNLALMLTSDTK---SIVRTAS--- 294
Query: 210 YQLPNLIVGAITKESLYNAVENGLTAEQQNAHPRVADRIPSVLENVCDQIRLWESDL 266
GAI ES+ N +G A + P + + + DQ+ + D+
Sbjct: 295 --------GAI--ESVLNENRSGSNANENGYEPGTKKKNENTIMGTIDQVGMKNQDV 341
>gi|440493551|gb|ELQ76006.1| RNA polymerase II transcription initiation/nucleotide excision
repair factor TFIIH, subunit TFB2 [Trachipleistophora
hominis]
Length = 426
Score = 74.7 bits (182), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 74/292 (25%), Positives = 132/292 (45%), Gaps = 50/292 (17%)
Query: 63 TMKVFQRGLLIQRDKEAPRLTESGFQFLLMDTNAQLWYIVREYISNSQHD-----SMLAY 117
+ V Q L+ KE +T SGF+FLL Q+W+++ I + +M+ +
Sbjct: 141 VLDVLQYAKLVNIIKE---ITHSGFEFLLKSRKEQMWFLILNGILMLGKNYVDWLTMIVF 197
Query: 118 ERG---------INQADLISFLLELSFHVAGEAYNLKTLSEIQRSMIKDFADLGLVKLQQ 168
E G IN++ + + + + + + K + ++K + LG+++
Sbjct: 198 EMGMYERHCWLKINESKIFGTARKHNKNTNIDPVSDKEAHSVLVRLLKYLSYLGIIQYSN 257
Query: 169 GRKE---SWFI----PTIADS---LETNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVG 218
+ +F+ I DS +ETN+++YAY+TS I++LFS+I +LPNL+
Sbjct: 258 DMVKPTAEYFLLFSSAAIQDSFLIVETNYKLYAYTTSSHELSIIKLFSQIVRELPNLVTA 317
Query: 219 AITKESLYNAVENGLTAEQQNAH--PRVADRIPSVLENVCDQIRLWESDLNRVEMTPAHY 276
IT+ES+ A G+T +Q + + +P V V +QI +WE +R++ A
Sbjct: 318 HITEESVNAAFLKGITGQQIVDYLTEKSKSELPPV---VLEQILIWERQRDRMKCIDAVI 374
Query: 277 YDEFPS-----------RE-------DSKKMRLVVNAEIHMHMREFLRGQNK 310
Y F + RE D + LVV E H ++ F++ K
Sbjct: 375 YSHFMTYNEYEITYRYCREKGALIDHDEFRRLLVVRLECHNEVKNFIKNNIK 426
>gi|403217068|emb|CCK71563.1| hypothetical protein KNAG_0H01490 [Kazachstania naganishii CBS
8797]
Length = 519
Score = 73.9 bits (180), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 43/124 (34%), Positives = 65/124 (52%), Gaps = 24/124 (19%)
Query: 183 LETNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKESLYNAVENGLTAEQ----- 237
+ETNF++Y+YS S L IL LF ++ + N++ G ITK S+ NA++NG+TAEQ
Sbjct: 347 VETNFKVYSYSNSPLQIAILSLFVHLKSRFINMVTGQITKRSIINALDNGITAEQIIAYL 406
Query: 238 -QNAHPRVADRIPSVLE------------------NVCDQIRLWESDLNRVEMTPAHYYD 278
+AHP++ + LE V DQI+LW+ + +RV Y
Sbjct: 407 ETHAHPQMRRLAEAQLEKKRELDQNCKDPLQILPPTVVDQIKLWQLEKDRVMAFEGSLYS 466
Query: 279 EFPS 282
+F S
Sbjct: 467 DFES 470
Score = 70.5 bits (171), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 45/149 (30%), Positives = 79/149 (53%), Gaps = 13/149 (8%)
Query: 32 LEAYAIGQWERFLLQLISSAQAERSINFCSSTMKVFQRGLLIQRDKE--APRLTESGFQF 89
L+ Y+ +WE L ++ + +E S+ + + + L++ + A ++T GFQF
Sbjct: 143 LDEYSANKWETILHFMVGTPMSEVP---SSNVLNLLKHSKLMEESEATGAFKITNEGFQF 199
Query: 90 LLMDTNAQLWYIVREYISNSQHDSMLAYERGINQADLISFLLELSFHVAGEAYNLKTLSE 149
LL + N+Q+W ++ +Y+ S+ M A D+++F+ L G+AY+ + LSE
Sbjct: 200 LLQEINSQIWTLLLQYLKMSESLQMDA-------VDVLNFIFMLGALEVGKAYSTEGLSE 252
Query: 150 IQRSMIKDFADLGLVKLQQGRKESWFIPT 178
QR MIKD D G+V Q+ + F PT
Sbjct: 253 TQRIMIKDMRDYGIV-FQKNSTSNVFYPT 280
>gi|255713706|ref|XP_002553135.1| KLTH0D09790p [Lachancea thermotolerans]
gi|238934515|emb|CAR22697.1| KLTH0D09790p [Lachancea thermotolerans CBS 6340]
Length = 506
Score = 73.6 bits (179), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 44/129 (34%), Positives = 71/129 (55%), Gaps = 24/129 (18%)
Query: 176 IPTIADSLETNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKESLYNAVENGLTA 235
IP A LETNF++Y+YS S L +L LF ++ + N++ G IT+ES+ A+ NG+TA
Sbjct: 328 IPDGAVILETNFKLYSYSNSPLQIAVLSLFVHLKSRFSNMVTGQITRESIRRALHNGITA 387
Query: 236 EQ------QNAHP---RVADRI--------PSVLE-------NVCDQIRLWESDLNRVEM 271
+Q +AHP R+A++ P+ E V DQI+LW+ +L+R+
Sbjct: 388 DQIIAYMETHAHPQMRRLAEQTLDKKMELDPNCNEGLQILPPTVVDQIKLWQLELDRIIS 447
Query: 272 TPAHYYDEF 280
+ + +F
Sbjct: 448 YDGYLFTDF 456
Score = 63.9 bits (154), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 42/148 (28%), Positives = 73/148 (49%), Gaps = 12/148 (8%)
Query: 32 LEAYAIGQWERFLLQLISSAQAERSINFCSSTMKVFQRGLLIQRDKEAP-RLTESGFQFL 90
L+ YA +WE L ++ + + + + + Q L++ ++T GFQFL
Sbjct: 137 LDQYAANKWETILHFMVGTPLTQTP---SRNVLSLLQHSKLMEESSSGELQITNEGFQFL 193
Query: 91 LMDTNAQLWYIVREYISNSQHDSMLAYERGINQADLISFLLELSFHVAGEAYNLKTLSEI 150
L D NAQ+W ++ +Y+ LA ++ D+++F+ L G+AY+ LS+
Sbjct: 194 LQDANAQIWALLLQYLR-------LAETLQMDPVDVLNFIFMLGALELGKAYSDTNLSDT 246
Query: 151 QRSMIKDFADLGLVKLQQGRKESWFIPT 178
Q+ M++D D GLV Q+ F PT
Sbjct: 247 QKIMLQDMRDYGLV-FQKASNTHKFYPT 273
>gi|449017614|dbj|BAM81016.1| similar to TFIIH subunit TFB2 [Cyanidioschyzon merolae strain 10D]
Length = 693
Score = 73.6 bits (179), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 38/109 (34%), Positives = 61/109 (55%), Gaps = 7/109 (6%)
Query: 183 LETNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKESLYNAVENGLTAEQ----Q 238
+ETNFR+YAY+ S +L LF++I Y++P + +G IT++S+ A++ G+TA+Q
Sbjct: 540 VETNFRLYAYAASSFQVALLSLFTRILYRMPGVAIGVITRDSVRRALKCGITAKQLLHFL 599
Query: 239 NAHPRVADRIPSVLENVCDQIRLWESDLNRVEMTPAHYYDEFPSREDSK 287
H +P NV DQI LWE + R++ P + F D +
Sbjct: 600 GIHSMEGKSVPF---NVHDQILLWELERKRIQAYPGVLLEGFEPTSDGR 645
Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 34/101 (33%), Positives = 52/101 (51%), Gaps = 9/101 (8%)
Query: 70 GLLIQRDKEAPRLTESGFQFLLMDTNAQLWYIVREYISNSQHDSMLAYERGINQADLISF 129
G+ Q + R+TE GF +LL+D +AQLW ++ Y+ N RG ++ +L
Sbjct: 285 GVSEQVGSDGMRITERGFSYLLLDIHAQLWALLEAYMENWDE------ARG-DRLELFDL 337
Query: 130 LLELSFHVAGEAYNL--KTLSEIQRSMIKDFADLGLVKLQQ 168
L L F V G Y+ +LS Q M+ A++GLV L +
Sbjct: 338 LFRLGFSVPGHIYDGGDPSLSAAQCRMLGFLAEIGLVYLME 378
>gi|400597688|gb|EJP65418.1| RNA polymerase II transcription factor B subunit 2 [Beauveria
bassiana ARSEF 2860]
Length = 507
Score = 73.2 bits (178), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 39/120 (32%), Positives = 70/120 (58%), Gaps = 13/120 (10%)
Query: 183 LETNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKESLYNAVENGLTAEQ----- 237
+ETN+R+YAY+ S L +L LFS++ + P+++ G IT+ S+ A++ G+TA+Q
Sbjct: 351 IETNYRLYAYTQSTLQIAVLALFSRLTMRFPDMVAGRITRTSIRQAIQFGITADQIIAYL 410
Query: 238 -QNAHPR------VADRIPSVLENVCDQIRLWESDLNRVEMTPAHYYDEFPSREDSKKMR 290
+AH + +A R P + V DQIRLW+ + R++ T + +F +++ + R
Sbjct: 411 AAHAHEQMHRSAALAAR-PVLPPTVVDQIRLWQLENERMKTTGGFLFRDFDDQKEYQDTR 469
Score = 53.9 bits (128), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 45/155 (29%), Positives = 72/155 (46%), Gaps = 16/155 (10%)
Query: 32 LEAYAIGQWERFLLQLISSAQAERSINFC-------SSTMKVFQRGLLIQRDKEAP-RLT 83
L+ YA +W+ L ++SS + + S + G L+ R +T
Sbjct: 142 LDRYARRRWDEILHFVVSSVGFKNAGGGGAAADGPNKSVRDILVAGRLVDRRPNGSIGIT 201
Query: 84 ESGFQFLLMDTNAQLWYIVREYISNSQHDSMLAYERGINQADLISFLLELSFHVAGEAYN 143
++GF FLL + NAQ+W ++ ++ D A D++SFL L+ G AY+
Sbjct: 202 QAGFTFLLQEANAQVWTLLLLWLDALDADKSAA-------VDMLSFLFVLASLELGRAYD 254
Query: 144 LKTLSEIQRSMIKDFADLGLVKLQQGRKESWFIPT 178
L+E +R M+ AD GLV + +K S F PT
Sbjct: 255 TNALTEHRRDMLPALADFGLVYIPP-QKRSMFFPT 288
>gi|401623322|gb|EJS41426.1| tfb2p [Saccharomyces arboricola H-6]
Length = 513
Score = 73.2 bits (178), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 46/134 (34%), Positives = 73/134 (54%), Gaps = 24/134 (17%)
Query: 176 IPTIADSLETNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKESLYNAVENGLTA 235
IP + +ETNF++Y+YS S L +L LF ++ + N+++G IT+ES+ A+ NG+TA
Sbjct: 334 IPDGSLIVETNFKIYSYSNSPLQIAVLSLFVHLKARFVNMVLGQITRESIRRALTNGITA 393
Query: 236 EQ------QNAHP---RVADRI--------PSVLE-------NVCDQIRLWESDLNRVEM 271
EQ +AHP R+A+ P+ E V DQIRLW+ +L+RV
Sbjct: 394 EQIIAYLETHAHPQMRRLAEEKLEKKLELDPNCKEPLQVLPPTVVDQIRLWQLELDRVMT 453
Query: 272 TPAHYYDEFPSRED 285
Y +F + ++
Sbjct: 454 YEGSLYSDFETSQE 467
Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 41/153 (26%), Positives = 76/153 (49%), Gaps = 13/153 (8%)
Query: 28 TLEDLEAYAIGQWERFLLQLISSAQAERSINFCSSTMKVFQRGLLIQRDKEAP--RLTES 85
+L+ L+ Y+ +WE L ++ + A+ + + + L++ ++T
Sbjct: 131 SLKMLDEYSANKWETILHFMVGTPLAKIP---SEKVLNLLKHSKLMEEINSTGEFKITNE 187
Query: 86 GFQFLLMDTNAQLWYIVREYISNSQHDSMLAYERGINQADLISFLLELSFHVAGEAYNLK 145
GFQFLL + N+QLW ++ +Y+ + M + D++ F+ L G+AY +
Sbjct: 188 GFQFLLQEINSQLWTLLLQYLKVIETSKM-------DLVDVLHFIFMLGALEVGKAYKID 240
Query: 146 TLSEIQRSMIKDFADLGLVKLQQGRKESWFIPT 178
LS+ QR M++D D GLV Q+ ++ F PT
Sbjct: 241 ALSDTQRIMLQDMRDYGLV-FQKHSNDTIFYPT 272
>gi|429962184|gb|ELA41728.1| hypothetical protein VICG_01232 [Vittaforma corneae ATCC 50505]
Length = 449
Score = 73.2 bits (178), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 71/285 (24%), Positives = 120/285 (42%), Gaps = 62/285 (21%)
Query: 81 RLTESGFQFLLMDTNAQLWYIVREYISNSQHDSMLAYERGINQADLI------------- 127
++T GF+FLL+ QLW+++ I DS+ E I+ A+++
Sbjct: 172 QITNKGFEFLLLARKDQLWFLIVNAIKYHSRDSLEESEMFISLAEILMKRRCGPYICSSF 231
Query: 128 ----SFLLE------------LSFHVAGEAYNLKT------LSEIQRSMIKDFADLGLVK 165
SFL L F+V K ++ + I D D+ K
Sbjct: 232 SSWHSFLDSIGVLFVISQDNNLVFYVNNSVLYDKVPLADSAMTHHGTAGIDDIYDIDYTK 291
Query: 166 --LQQGRKESWFIPTIADSLETNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKE 223
+ + + FI LETNF++YAY+++ +L LFSK Y PNLI +E
Sbjct: 292 PNIPINKASNKFIV-----LETNFKIYAYTSTAYDKSVLSLFSKTVYVFPNLIKACFDEE 346
Query: 224 SLYNAVENGLTAEQQNAHPRVADRIPSVLENVCDQIRLWESDLNRVEMTPAHYYDEFPSR 283
SL +A G+TA+Q + + + V +N+ +QI +WE +R+ + Y +F
Sbjct: 347 SLLSAFNKGITAKQIIKY--LQEHSEEVPKNIVNQISIWEHRQHRIRARNGYLYHDFIHL 404
Query: 284 EDSKKM-----------------RLVVNAE-IHMHMREFLRGQNK 310
D ++ R++V E IH ++ F++ K
Sbjct: 405 SDFHRVLRYVESKGGLIYRDEVKRMIVGEERIHESVKNFIKEMQK 449
>gi|346323394|gb|EGX92992.1| TFIIH and nucleotide excision repair factor 3 complexes subunit
(Tfb2), putative [Cordyceps militaris CM01]
Length = 511
Score = 73.2 bits (178), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 35/109 (32%), Positives = 64/109 (58%), Gaps = 11/109 (10%)
Query: 183 LETNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKESLYNAVENGLTAEQ----- 237
+ETN+R+YAY+ S L +L LF+++ + P+++ G +T+ S+ A++ G+TA+Q
Sbjct: 355 IETNYRLYAYTQSTLQIAVLALFARLTMRFPDMVAGRLTRTSIRQAIQFGITADQIIAYL 414
Query: 238 -QNAHPRVADRI-----PSVLENVCDQIRLWESDLNRVEMTPAHYYDEF 280
+AH ++ P + V DQIRLW+ + R++ TP + +F
Sbjct: 415 AAHAHEQMHRTAALTNKPVLPPTVVDQIRLWQLENERMKTTPGFLFRDF 463
Score = 58.5 bits (140), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 37/108 (34%), Positives = 56/108 (51%), Gaps = 8/108 (7%)
Query: 71 LLIQRDKEAPRLTESGFQFLLMDTNAQLWYIVREYISNSQHDSMLAYERGINQADLISFL 130
L+ +R + +T++GF FLL + NAQ+W ++ ++ D A D +SFL
Sbjct: 194 LVDRRPSGSVGITQAGFTFLLQEANAQVWTLLLLWLDAQDADKNAA-------VDTLSFL 246
Query: 131 LELSFHVAGEAYNLKTLSEIQRSMIKDFADLGLVKLQQGRKESWFIPT 178
L+ G AY+ LSE +R M+ AD GLV + +K S F PT
Sbjct: 247 FMLASLEPGRAYDTHALSEQRRDMLPALADFGLVYIPP-QKRSMFFPT 293
>gi|167535774|ref|XP_001749560.1| hypothetical protein [Monosiga brevicollis MX1]
gi|163771952|gb|EDQ85611.1| predicted protein [Monosiga brevicollis MX1]
Length = 417
Score = 73.2 bits (178), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 58/246 (23%), Positives = 110/246 (44%), Gaps = 28/246 (11%)
Query: 14 PREPMPSGITARLPTLEDLEAYAIGQWERFLLQLISSAQAERSINFCSSTMKVFQRGLLI 73
P + MP A T LE ++ WE L + ++A+ + S + + + Q LI
Sbjct: 111 PDQAMPPPKKASEVTPAFLEEHSRVSWEAILSYMTTNAELKNS-----TMILILQEAQLI 165
Query: 74 QRDKEAPRLTESGFQFLLMDTNAQLWYIVREYISNSQHDSMLAYERGINQADLISFLLEL 133
D+ +T GFQFLL D Q+W ++ ++ + + E G+ + + L +
Sbjct: 166 VNDQPPISVTPEGFQFLLQDRANQVWLLIVTFLKLLSREEPIPGE-GLPMHEALVLLFRI 224
Query: 134 SFHVAGEA----YNLKTLSEIQRSMIKDFADLGLVKLQQGRKESWFIPTIADSL------ 183
E ++ + L+ +Q + ++ +G+V + + + +F+ A L
Sbjct: 225 GLGRLNEVSVLEFSAENLTTMQITFLRQLHYMGVVYHRNRKSKRFFLTPYAVMLYHNAEL 284
Query: 184 ------------ETNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKESLYNAVEN 231
ETNF +YAY+ S + +L F+ + Y+LP + IT+ S+ A+
Sbjct: 285 ALSQTETGFLLAETNFHVYAYTDSAVKVALLSKFATLTYRLPIMTTAIITRTSVRRALSQ 344
Query: 232 GLTAEQ 237
G+TA+Q
Sbjct: 345 GITADQ 350
>gi|194390490|dbj|BAG62007.1| unnamed protein product [Homo sapiens]
Length = 220
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 44/134 (32%), Positives = 75/134 (55%), Gaps = 11/134 (8%)
Query: 32 LEAYAIGQWERFLLQLISSAQAERSINFCSSTMKVFQRGLLIQRDK-EAPRLTESGFQFL 90
L+ YA +WE L ++ S A S + + Q GL+ + E P +T +GFQFL
Sbjct: 92 LDKYAEERWEVVLHFMVGSPSAAVSQDLAQ---LLSQAGLMKSTEPGEPPCITSAGFQFL 148
Query: 91 LMDTNAQLWYIVREYISNSQHDSMLAYERGINQADLISFLLELSFHVAGEAYNLKTLSEI 150
L+DT AQLWY + +Y+ +Q RG++ +++SFL +LSF G+ Y+++ +S+
Sbjct: 149 LLDTPAQLWYFMLQYLQTAQ-------SRGMDLVEILSFLFQLSFSTLGKDYSVEGMSDS 201
Query: 151 QRSMIKDFADLGLV 164
+ ++ + GLV
Sbjct: 202 LLNFLQHLREFGLV 215
>gi|355693906|gb|AER99491.1| proteinral transcription factor IIH, polypeptide 4, 52kDa [Mustela
putorius furo]
Length = 143
Score = 72.4 bits (176), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 34/97 (35%), Positives = 59/97 (60%), Gaps = 6/97 (6%)
Query: 195 SKLHCEILRLFSKIEYQLPNLIVGAITKESLYNAVENGLTAEQ------QNAHPRVADRI 248
S+L ++ LFS++ Y+ PN++V +T+ES+ A+ +G+TA+Q AHP + +
Sbjct: 2 SELQIALIALFSEMLYRFPNMVVAQVTRESVQQAIASGITAQQIIHFLRTRAHPVMLKQT 61
Query: 249 PSVLENVCDQIRLWESDLNRVEMTPAHYYDEFPSRED 285
P + + DQIRLWE + +R+ T Y++F S+ D
Sbjct: 62 PVLPPTITDQIRLWELERDRLRFTEGVLYNQFLSQVD 98
>gi|269861689|ref|XP_002650538.1| transcription/repair factor TFIIH subunit [Enterocytozoon bieneusi
H348]
gi|220065990|gb|EED43520.1| transcription/repair factor TFIIH subunit [Enterocytozoon bieneusi
H348]
Length = 291
Score = 72.0 bits (175), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 54/212 (25%), Positives = 99/212 (46%), Gaps = 38/212 (17%)
Query: 82 LTESGFQFLLMDTNAQLWYIVREYI--SNSQHDSMLAYERGINQADLI-----SFLLELS 134
+T G +FLLM+ N Q+WY++ E I S+ H + +Y + +N +I +FL+E++
Sbjct: 72 ITTKGLEFLLMNKNEQIWYLIVEDIRLSSHLHKKLYSYAQVLNGHKIIDKKILNFLVEIN 131
Query: 135 FHVAGEAYNLKTLSEIQRSMIKDFADLGLVKLQQGRKESWFIPTIADSLETNFRMYAYST 194
+I + D L K + + I LETNF++Y+Y+
Sbjct: 132 -------------------VIDNIVDQNLYKYILYKNNTEIQKFIY--LETNFKLYSYTN 170
Query: 195 SKLHCEILRLFSKIEYQLPNLIVGAITKESLYNAVENGLTAEQQNAHPRVADRIPSVLEN 254
+ IL LFS I +++P +I + ++ + N ++ G+ +Q + + I N
Sbjct: 171 NLCDRAILDLFSNIVFEVPGMIKSILDEKKIMNTLDRGIKIQQ------IVEYIRRHTIN 224
Query: 255 VCDQ----IRLWESDLNRVEMTPAHYYDEFPS 282
CDQ I +W+ NR+ + Y +F +
Sbjct: 225 NCDQILHMIEIWDKQRNRINKQIGYLYSDFTN 256
>gi|269860316|ref|XP_002649880.1| transcription/repair factor TFIIH subunit [Enterocytozoon bieneusi
H348]
gi|220066720|gb|EED44193.1| transcription/repair factor TFIIH subunit [Enterocytozoon bieneusi
H348]
Length = 369
Score = 72.0 bits (175), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 54/212 (25%), Positives = 99/212 (46%), Gaps = 38/212 (17%)
Query: 82 LTESGFQFLLMDTNAQLWYIVREYI--SNSQHDSMLAYERGINQADLI-----SFLLELS 134
+T G +FLLM+ N Q+WY++ E I S+ H + +Y + +N +I +FL+E++
Sbjct: 150 ITTKGLEFLLMNKNEQIWYLIVEDIRLSSHLHKKLYSYAQVLNGHKIIDKKILNFLVEIN 209
Query: 135 FHVAGEAYNLKTLSEIQRSMIKDFADLGLVKLQQGRKESWFIPTIADSLETNFRMYAYST 194
+I + D L K + + I LETNF++Y+Y+
Sbjct: 210 -------------------VIDNIVDQNLYKYILYKNNTEIQKFIY--LETNFKLYSYTN 248
Query: 195 SKLHCEILRLFSKIEYQLPNLIVGAITKESLYNAVENGLTAEQQNAHPRVADRIPSVLEN 254
+ IL LFS I +++P +I + ++ + N ++ G+ +Q + + I N
Sbjct: 249 NLCDRAILDLFSNIVFEVPGMIKSILDEKKIMNTLDRGIKIQQ------IVEYIRRHTIN 302
Query: 255 VCDQ----IRLWESDLNRVEMTPAHYYDEFPS 282
CDQ I +W+ NR+ + Y +F +
Sbjct: 303 NCDQILHMIEIWDKQRNRINKQIGYLYSDFTN 334
>gi|323306981|gb|EGA60265.1| Tfb2p [Saccharomyces cerevisiae FostersO]
Length = 448
Score = 72.0 bits (175), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 45/134 (33%), Positives = 73/134 (54%), Gaps = 24/134 (17%)
Query: 176 IPTIADSLETNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKESLYNAVENGLTA 235
IP + +ETNF++Y+YS S L +L LF ++ + N+++G IT+ES+ A+ NG+TA
Sbjct: 285 IPDGSLIVETNFKIYSYSNSPLQIAVLSLFVHLKARFVNMVLGQITRESIRRALTNGITA 344
Query: 236 EQ------QNAHP---RVADRI--------PSVLE-------NVCDQIRLWESDLNRVEM 271
+Q +AHP R+A+ P+ E V DQIRLW+ +L+RV
Sbjct: 345 DQIIAYLETHAHPQMRRLAEEKLEKKLELDPNCKEPLQVLPPTVVDQIRLWQLELDRVIT 404
Query: 272 TPAHYYDEFPSRED 285
Y +F + ++
Sbjct: 405 YEGSLYSDFETSQE 418
Score = 65.5 bits (158), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 43/153 (28%), Positives = 76/153 (49%), Gaps = 13/153 (8%)
Query: 28 TLEDLEAYAIGQWERFLLQLISSAQAERSINFCSSTMKVFQRGLLIQRDKEAP--RLTES 85
+L+ L+ Y+ +WE L ++ + A+ + + + L++ ++T
Sbjct: 82 SLDLLDEYSANKWETILHFMVGTPLAKIP---SEKVLNLLKHSKLMEEVNSTGEFKITNE 138
Query: 86 GFQFLLMDTNAQLWYIVREYISNSQHDSMLAYERGINQADLISFLLELSFHVAGEAYNLK 145
GFQFLL + N+QLW ++ +Y+ + M + D++ F+ L G+AY +
Sbjct: 139 GFQFLLQEINSQLWTLLLQYLKMIETSKM-------DLVDVLHFIFMLGALEVGKAYKID 191
Query: 146 TLSEIQRSMIKDFADLGLVKLQQGRKESWFIPT 178
LSE QR M++D D GLV Q+ +S F PT
Sbjct: 192 ALSETQRIMLQDMRDYGLV-FQKHSNDSIFYPT 223
>gi|221482097|gb|EEE20458.1| tfiih, polypeptide, putative [Toxoplasma gondii GT1]
Length = 861
Score = 71.6 bits (174), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 36/103 (34%), Positives = 64/103 (62%), Gaps = 11/103 (10%)
Query: 183 LETNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKESLYNAVENGLTAEQ----- 237
+++NF++Y Y+ S L +L +++ ++PNLIVG +T+ S+ A ++G+TA+Q
Sbjct: 677 VQSNFKVYVYTASALQLSVLSHLCELQARMPNLIVGILTRASVLAAYKSGITADQIIRFL 736
Query: 238 -QNAHPRVADR-----IPSVLENVCDQIRLWESDLNRVEMTPA 274
+AHP V +R P + ENV Q+R+WE++ R+ + PA
Sbjct: 737 EAHAHPVVLERKLRTNAPLLPENVTIQLRMWEAERMRLSLYPA 779
>gi|349581695|dbj|GAA26852.1| K7_Tfb2p [Saccharomyces cerevisiae Kyokai no. 7]
Length = 513
Score = 71.6 bits (174), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 45/134 (33%), Positives = 73/134 (54%), Gaps = 24/134 (17%)
Query: 176 IPTIADSLETNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKESLYNAVENGLTA 235
IP + +ETNF++Y+YS S L +L LF ++ + N+++G IT+ES+ A+ NG+TA
Sbjct: 334 IPDGSLIVETNFKIYSYSNSPLQIAVLSLFVHLKARFVNMVLGQITRESIRRALTNGITA 393
Query: 236 EQ------QNAHP---RVADRI--------PSVLE-------NVCDQIRLWESDLNRVEM 271
+Q +AHP R+A+ P+ E V DQIRLW+ +L+RV
Sbjct: 394 DQIIAYLETHAHPQMRRLAEEKLEKKLELDPNCKEPLQVLPPTVVDQIRLWQLELDRVIT 453
Query: 272 TPAHYYDEFPSRED 285
Y +F + ++
Sbjct: 454 YEGSLYSDFETSQE 467
Score = 64.3 bits (155), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 42/153 (27%), Positives = 76/153 (49%), Gaps = 13/153 (8%)
Query: 28 TLEDLEAYAIGQWERFLLQLISSAQAERSINFCSSTMKVFQRGLLIQRDKEAP--RLTES 85
+L+ L+ Y+ +WE L ++ + A+ + + + L++ ++T
Sbjct: 131 SLDLLDEYSANKWETILHFMVGTPLAKIP---SEKVLNLLKHSKLMEEVNSTGEFKITNE 187
Query: 86 GFQFLLMDTNAQLWYIVREYISNSQHDSMLAYERGINQADLISFLLELSFHVAGEAYNLK 145
GFQFLL + N+QLW ++ +Y+ + M + D++ F+ L G+AY +
Sbjct: 188 GFQFLLQEINSQLWTLLLQYLKMIETSKM-------DLVDVLHFIFMLGALEVGKAYKID 240
Query: 146 TLSEIQRSMIKDFADLGLVKLQQGRKESWFIPT 178
LS+ QR M++D D GLV Q+ +S F PT
Sbjct: 241 ALSQTQRIMLQDMRDYGLV-FQKHSNDSIFYPT 272
>gi|401410644|ref|XP_003884770.1| hypothetical protein NCLIV_051680 [Neospora caninum Liverpool]
gi|325119188|emb|CBZ54742.1| hypothetical protein NCLIV_051680 [Neospora caninum Liverpool]
Length = 868
Score = 71.6 bits (174), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 36/103 (34%), Positives = 64/103 (62%), Gaps = 11/103 (10%)
Query: 183 LETNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKESLYNAVENGLTAEQ----- 237
+++NF++Y Y+ S L +L +++ ++PNLIVG +T+ S+ A ++G+TA+Q
Sbjct: 684 VQSNFKVYVYTASALQLSVLSHLCELQARMPNLIVGILTRASVLAAYKSGITADQIIRFL 743
Query: 238 -QNAHPRVADR-----IPSVLENVCDQIRLWESDLNRVEMTPA 274
+AHP V +R P + ENV Q+R+WE++ R+ + PA
Sbjct: 744 EAHAHPVVLERKLRTNAPLLPENVTIQLRMWEAERMRLSLYPA 786
>gi|6325135|ref|NP_015203.1| Tfb2p [Saccharomyces cerevisiae S288c]
gi|62901134|sp|Q02939.1|TFB2_YEAST RecName: Full=RNA polymerase II transcription factor B subunit 2;
AltName: Full=General transcription and DNA repair
factor IIH subunit TFB2; Short=TFIIH subunit TFB2;
AltName: Full=RNA polymerase II transcription factor B
52 kDa subunit; AltName: Full=RNA polymerase II
transcription factor B p52 subunit
gi|1163092|gb|AAB68240.1| Tfb2p: TFIIH subunit [Saccharomyces cerevisiae]
gi|1778059|gb|AAB40628.1| transcription/repair factor TFIIH subunit Tfb2, partial
[Saccharomyces cerevisiae]
gi|151942676|gb|EDN61022.1| transcription initiation factor TFIIH subunit [Saccharomyces
cerevisiae YJM789]
gi|190407835|gb|EDV11100.1| RNA polymerase II transcription factor B subunit 2 [Saccharomyces
cerevisiae RM11-1a]
gi|256274256|gb|EEU09164.1| Tfb2p [Saccharomyces cerevisiae JAY291]
gi|259150035|emb|CAY86838.1| Tfb2p [Saccharomyces cerevisiae EC1118]
gi|285815419|tpg|DAA11311.1| TPA: Tfb2p [Saccharomyces cerevisiae S288c]
gi|323331200|gb|EGA72618.1| Tfb2p [Saccharomyces cerevisiae AWRI796]
gi|323335024|gb|EGA76314.1| Tfb2p [Saccharomyces cerevisiae Vin13]
gi|323346175|gb|EGA80465.1| Tfb2p [Saccharomyces cerevisiae Lalvin QA23]
gi|323352000|gb|EGA84539.1| Tfb2p [Saccharomyces cerevisiae VL3]
gi|365762780|gb|EHN04313.1| Tfb2p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
gi|392295887|gb|EIW06990.1| Tfb2p [Saccharomyces cerevisiae CEN.PK113-7D]
Length = 513
Score = 71.6 bits (174), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 45/134 (33%), Positives = 73/134 (54%), Gaps = 24/134 (17%)
Query: 176 IPTIADSLETNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKESLYNAVENGLTA 235
IP + +ETNF++Y+YS S L +L LF ++ + N+++G IT+ES+ A+ NG+TA
Sbjct: 334 IPDGSLIVETNFKIYSYSNSPLQIAVLSLFVHLKARFVNMVLGQITRESIRRALTNGITA 393
Query: 236 EQ------QNAHP---RVADRI--------PSVLE-------NVCDQIRLWESDLNRVEM 271
+Q +AHP R+A+ P+ E V DQIRLW+ +L+RV
Sbjct: 394 DQIIAYLETHAHPQMRRLAEEKLEKKLELDPNCKEPLQVLPPTVVDQIRLWQLELDRVIT 453
Query: 272 TPAHYYDEFPSRED 285
Y +F + ++
Sbjct: 454 YEGSLYSDFETSQE 467
Score = 65.9 bits (159), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 43/153 (28%), Positives = 76/153 (49%), Gaps = 13/153 (8%)
Query: 28 TLEDLEAYAIGQWERFLLQLISSAQAERSINFCSSTMKVFQRGLLIQRDKEAP--RLTES 85
+L+ L+ Y+ +WE L ++ + A+ + + + L++ ++T
Sbjct: 131 SLDLLDEYSANKWETILHFMVGTPLAKIP---SEKVLNLLKHSKLMEEVNSTGEFKITNE 187
Query: 86 GFQFLLMDTNAQLWYIVREYISNSQHDSMLAYERGINQADLISFLLELSFHVAGEAYNLK 145
GFQFLL + N+QLW ++ +Y+ + M + D++ F+ L G+AY +
Sbjct: 188 GFQFLLQEINSQLWTLLLQYLKMIETSKM-------DLVDVLHFIFMLGALEVGKAYKID 240
Query: 146 TLSEIQRSMIKDFADLGLVKLQQGRKESWFIPT 178
LSE QR M++D D GLV Q+ +S F PT
Sbjct: 241 ALSETQRIMLQDMRDYGLV-FQKHSNDSIFYPT 272
>gi|221502519|gb|EEE28246.1| tfiih, polypeptide, putative [Toxoplasma gondii VEG]
Length = 836
Score = 71.6 bits (174), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 36/103 (34%), Positives = 64/103 (62%), Gaps = 11/103 (10%)
Query: 183 LETNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKESLYNAVENGLTAEQ----- 237
+++NF++Y Y+ S L +L +++ ++PNLIVG +T+ S+ A ++G+TA+Q
Sbjct: 652 VQSNFKVYVYTASALQLSVLSHLCELQARMPNLIVGILTRASVLAAYKSGITADQIIRFL 711
Query: 238 -QNAHPRVADR-----IPSVLENVCDQIRLWESDLNRVEMTPA 274
+AHP V +R P + ENV Q+R+WE++ R+ + PA
Sbjct: 712 EAHAHPVVLERKLRTNAPLLPENVTIQLRMWEAERMRLSLYPA 754
>gi|237842971|ref|XP_002370783.1| hypothetical protein TGME49_014520 [Toxoplasma gondii ME49]
gi|211968447|gb|EEB03643.1| hypothetical protein TGME49_014520 [Toxoplasma gondii ME49]
Length = 836
Score = 71.6 bits (174), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 36/103 (34%), Positives = 64/103 (62%), Gaps = 11/103 (10%)
Query: 183 LETNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKESLYNAVENGLTAEQ----- 237
+++NF++Y Y+ S L +L +++ ++PNLIVG +T+ S+ A ++G+TA+Q
Sbjct: 652 VQSNFKVYVYTASALQLSVLSHLCELQARMPNLIVGILTRASVLAAYKSGITADQIIRFL 711
Query: 238 -QNAHPRVADR-----IPSVLENVCDQIRLWESDLNRVEMTPA 274
+AHP V +R P + ENV Q+R+WE++ R+ + PA
Sbjct: 712 EAHAHPVVLERKLRTNAPLLPENVTIQLRMWEAERMRLSLYPA 754
>gi|323302721|gb|EGA56527.1| Tfb2p [Saccharomyces cerevisiae FostersB]
Length = 505
Score = 71.6 bits (174), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 45/134 (33%), Positives = 73/134 (54%), Gaps = 24/134 (17%)
Query: 176 IPTIADSLETNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKESLYNAVENGLTA 235
IP + +ETNF++Y+YS S L +L LF ++ + N+++G IT+ES+ A+ NG+TA
Sbjct: 334 IPDGSLIVETNFKIYSYSNSPLQIAVLSLFVHLKARFVNMVLGQITRESIRRALTNGITA 393
Query: 236 EQ------QNAHP---RVADRI--------PSVLE-------NVCDQIRLWESDLNRVEM 271
+Q +AHP R+A+ P+ E V DQIRLW+ +L+RV
Sbjct: 394 DQIIAYLETHAHPQMRRLAEEKLEKKLELDPNCKEPLQVLPPTVVDQIRLWQLELDRVIT 453
Query: 272 TPAHYYDEFPSRED 285
Y +F + ++
Sbjct: 454 YEGSLYSDFETSQE 467
Score = 65.9 bits (159), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 43/153 (28%), Positives = 76/153 (49%), Gaps = 13/153 (8%)
Query: 28 TLEDLEAYAIGQWERFLLQLISSAQAERSINFCSSTMKVFQRGLLIQRDKEAP--RLTES 85
+L+ L+ Y+ +WE L ++ + A+ + + + L++ ++T
Sbjct: 131 SLDLLDEYSANKWETILHFMVGTPLAKIP---SEKVLNLLKHSKLMEEVNSTGEFKITNE 187
Query: 86 GFQFLLMDTNAQLWYIVREYISNSQHDSMLAYERGINQADLISFLLELSFHVAGEAYNLK 145
GFQFLL + N+QLW ++ +Y+ + M + D++ F+ L G+AY +
Sbjct: 188 GFQFLLQEINSQLWTLLLQYLKMIETSKM-------DLVDVLHFIFMLGALEVGKAYKID 240
Query: 146 TLSEIQRSMIKDFADLGLVKLQQGRKESWFIPT 178
LSE QR M++D D GLV Q+ +S F PT
Sbjct: 241 ALSETQRIMLQDMRDYGLV-FQKHSNDSIFYPT 272
>gi|422294120|gb|EKU21420.1| transcription initiation factor TFIIH subunit 4, partial
[Nannochloropsis gaditana CCMP526]
Length = 213
Score = 71.2 bits (173), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 50/181 (27%), Positives = 82/181 (45%), Gaps = 50/181 (27%)
Query: 139 GEAYNLKTLSEIQRSMIKDFADLGLVKLQQGRKESWFIPT-------------------- 178
G Y ++ LS Q+++++ F GL+ Q R F PT
Sbjct: 1 GRPYPVRALSPTQQALLEKFISFGLI-YQDDRHSRHFYPTAVAVNLIFGGTVQEERLRRG 59
Query: 179 ----------------------IADSLETNFRMYAYSTSKLHCEILRLFSKIEYQLPNLI 216
+A +ETN+++ AY++S LH E+LR+F+ + +LPN++
Sbjct: 60 HGHVGPEGRENTKELRLVDPSQLAVIVETNYQLVAYTSSSLHVEMLRIFTDVRCRLPNVV 119
Query: 217 VGAITKESLYNAVENGLTAEQ----QNAHPRVADRIPS---VLENVCDQIRLWESDLNRV 269
+G IT+ S+ A+ +G+TA H VA R + ENV QI LW + +RV
Sbjct: 120 IGFITRASVRRAMASGITAATILSFLKTHTHVAVRAGKGRLLPENVEAQIELWHQERSRV 179
Query: 270 E 270
+
Sbjct: 180 K 180
>gi|45187599|ref|NP_983822.1| ADL274Wp [Ashbya gossypii ATCC 10895]
gi|62901343|sp|Q75B51.1|TFB2_ASHGO RecName: Full=RNA polymerase II transcription factor B subunit 2;
AltName: Full=RNA polymerase II transcription factor B
52 kDa subunit; AltName: Full=RNA polymerase II
transcription factor B p52 subunit
gi|44982337|gb|AAS51646.1| ADL274Wp [Ashbya gossypii ATCC 10895]
gi|374107034|gb|AEY95942.1| FADL274Wp [Ashbya gossypii FDAG1]
Length = 514
Score = 71.2 bits (173), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 51/169 (30%), Positives = 81/169 (47%), Gaps = 47/169 (27%)
Query: 183 LETNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKESLYNAVENGLTAEQ----- 237
+ETNF++Y+YS S L IL LF ++ + N++ G IT+ES+ A+ NG+TA+Q
Sbjct: 343 VETNFKLYSYSNSPLQIAILSLFIHLKTRFQNMVTGQITRESIRRALHNGITADQIIAYM 402
Query: 238 -QNAHPRV----ADRIPSVLE--------------NVCDQIRLWESDLNRVEMTPAHYYD 278
+AHP++ D + LE V DQI+LW+ +L+R+ + +
Sbjct: 403 ETHAHPQMRRLAGDNLEKKLELDPNCRDTLQVLPPTVVDQIKLWQLELDRIISYDGYLFR 462
Query: 279 EFPS-------------------REDSKKMRLVV---NAE-IHMHMREF 304
+F + +D KKM V NA+ I H R+F
Sbjct: 463 DFDNLQEYQVLAQYARDIGVLLWSDDKKKMFFVSKEGNAQVIDFHKRKF 511
Score = 67.8 bits (164), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 47/178 (26%), Positives = 92/178 (51%), Gaps = 13/178 (7%)
Query: 28 TLEDLEAYAIGQWERFLLQLISSAQAERSINFCSSTMKVFQRGLLIQRDKEAP--RLTES 85
T+ L++YA +WE L ++ + + + + + + L++ D+ + ++T
Sbjct: 142 TMAMLDSYAADKWETILHFMVGTPLTKSP---GKNVLSLLRHSKLMEVDESSKELKITNE 198
Query: 86 GFQFLLMDTNAQLWYIVREYISNSQHDSMLAYERGINQADLISFLLELSFHVAGEAYNLK 145
GFQFLL D NAQ+W ++ +Y++ ++ M + D+++ + + G+AY++
Sbjct: 199 GFQFLLQDANAQIWTLLLQYLTMAETFQM-------DPVDVLNLIFMIGALELGKAYSVV 251
Query: 146 TLSEIQRSMIKDFADLGLVKLQQGRKESWFIPTIADSLETNFRMYAYSTSKLHCEILR 203
LSE Q++M++D D GLV Q+ S F PT ++ T+ + S S +LR
Sbjct: 252 GLSETQKTMLQDLRDYGLV-FQKQSNLSKFYPTRLATMLTSDVVSIRSASGAVNSVLR 308
>gi|366991461|ref|XP_003675496.1| hypothetical protein NCAS_0C01390 [Naumovozyma castellii CBS 4309]
gi|342301361|emb|CCC69129.1| hypothetical protein NCAS_0C01390 [Naumovozyma castellii CBS 4309]
Length = 516
Score = 70.9 bits (172), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 43/129 (33%), Positives = 68/129 (52%), Gaps = 24/129 (18%)
Query: 176 IPTIADSLETNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKESLYNAVENGLTA 235
IP + +ETNF++Y+YS S L L LF ++ + N++ G IT+ES+ A+ NG+TA
Sbjct: 338 IPDGSLIIETNFKLYSYSNSPLQIATLSLFVHLKSRFANMVTGQITRESIRRALINGITA 397
Query: 236 EQ------QNAHPRV----ADRIPSVLE--------------NVCDQIRLWESDLNRVEM 271
+Q +AHP++ +R+ LE V DQI+LW+ +L+RV
Sbjct: 398 DQIIAYLETHAHPQMRRLAEERLEKKLELDPNSKDPLQVLPPTVVDQIKLWQLELDRVIT 457
Query: 272 TPAHYYDEF 280
Y +F
Sbjct: 458 YEGSLYSDF 466
Score = 63.9 bits (154), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 41/153 (26%), Positives = 78/153 (50%), Gaps = 13/153 (8%)
Query: 28 TLEDLEAYAIGQWERFLLQLISSAQAERSINFCSSTMKVFQRGLLIQRDKEAP--RLTES 85
+L+ L+ Y+ +WE L ++ + + +S + + + L++ ++T
Sbjct: 136 SLQLLDEYSANKWETILHFMVGTPMSSIP---SASVLNLLKHTRLMEEVDHTSEFKITNE 192
Query: 86 GFQFLLMDTNAQLWYIVREYISNSQHDSMLAYERGINQADLISFLLELSFHVAGEAYNLK 145
GFQFLL + N+Q+W ++ +Y+ S+ M + D+++F+ L G+ Y++
Sbjct: 193 GFQFLLQELNSQIWTLLLQYLKMSETLKM-------DSVDVLNFIFMLGALEVGKGYSID 245
Query: 146 TLSEIQRSMIKDFADLGLVKLQQGRKESWFIPT 178
LSE Q+ M+KD D GLV Q+ + F PT
Sbjct: 246 GLSETQKIMLKDMRDYGLV-FQKYTNSNLFYPT 277
>gi|207340606|gb|EDZ68904.1| YPL122Cp-like protein [Saccharomyces cerevisiae AWRI1631]
Length = 226
Score = 70.9 bits (172), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 45/134 (33%), Positives = 73/134 (54%), Gaps = 24/134 (17%)
Query: 176 IPTIADSLETNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKESLYNAVENGLTA 235
IP + +ETNF++Y+YS S L +L LF ++ + N+++G IT+ES+ A+ NG+TA
Sbjct: 47 IPDGSLIVETNFKIYSYSNSPLQIAVLSLFVHLKARFVNMVLGQITRESIRRALTNGITA 106
Query: 236 EQ------QNAHP---RVADRI--------PSVLE-------NVCDQIRLWESDLNRVEM 271
+Q +AHP R+A+ P+ E V DQIRLW+ +L+RV
Sbjct: 107 DQIIAYLETHAHPQMRRLAEEKLEKKLELDPNCKEPLQVLPPTVVDQIRLWQLELDRVIT 166
Query: 272 TPAHYYDEFPSRED 285
Y +F + ++
Sbjct: 167 YEGSLYSDFETSQE 180
>gi|322697444|gb|EFY89224.1| TFIIH and nucleotide excision repair factor 3 complexes subunit
(Tfb2), putative [Metarhizium acridum CQMa 102]
Length = 541
Score = 70.5 bits (171), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 39/119 (32%), Positives = 69/119 (57%), Gaps = 16/119 (13%)
Query: 183 LETNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKESLYNAVENGLTAEQ----- 237
+ETN+R+YAY+ S L +L LF K+ + P+++ G +T+ S++ A+ G+TA+Q
Sbjct: 385 VETNYRIYAYTQSTLQIAVLALFCKLNMRFPDMVAGRVTRTSIHQAINFGITADQIISYL 444
Query: 238 -QNAHPR------VADRIPSVLENVCDQIRLWESDLNRVEMTPAHYYDEFPSREDSKKM 289
+AH + +A++ P + V DQIRLW+ + R++ T + +F ED K+
Sbjct: 445 AAHAHEQMHRTAALANK-PILPPTVVDQIRLWQLENERMKTTGGFLFRDF---EDHKEF 499
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 45/151 (29%), Positives = 77/151 (50%), Gaps = 9/151 (5%)
Query: 32 LEAYAIGQWERFLLQLISSAQAERSINFCS---STMKVFQRGLLIQRDKEAP-RLTESGF 87
L+ YA +WE L ++SS + + + S ++ G L+ R +T++GF
Sbjct: 169 LDRYARKRWEDILHFVVSSVGYKSTGDVSGPNKSVKELLIAGRLVDRRPNGSIGITQAGF 228
Query: 88 QFLLMDTNAQLWYIVREYISNSQHDSMLAYERGINQADLISFLLELSFHVAGEAYNLKTL 147
FLL + NAQ+W ++ ++ S+ + G+ D++SFL L+ G AY+ L
Sbjct: 229 TFLLQEPNAQVWTLLLLWLEASETNK----AAGLETVDMLSFLFVLASLELGRAYDTNAL 284
Query: 148 SEIQRSMIKDFADLGLVKLQQGRKESWFIPT 178
+E +R+M+ D GL+ + Q K S F PT
Sbjct: 285 TEQRRNMLPSLLDFGLIYIPQ-HKRSMFFPT 314
>gi|90076516|dbj|BAE87938.1| unnamed protein product [Macaca fascicularis]
Length = 358
Score = 70.1 bits (170), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 41/122 (33%), Positives = 69/122 (56%), Gaps = 11/122 (9%)
Query: 29 LEDLEAYAIGQWERFLLQLISSAQAERSINFCSSTMKVFQRGLLIQRDK-EAPRLTESGF 87
+ L+ YA +WE L ++ S A S + + Q GL+ + E P +T +GF
Sbjct: 181 VPSLDKYAEERWEVVLHFMVGSPSAAVSQDL---AQLLSQAGLMKSTEPGEPPCITSAGF 237
Query: 88 QFLLMDTNAQLWYIVREYISNSQHDSMLAYERGINQADLISFLLELSFHVAGEAYNLKTL 147
QFLL+DT AQLWY + +Y+ +Q RG++ +++SFL +LSF G+ Y+++ +
Sbjct: 238 QFLLLDTPAQLWYFMLQYLQTAQ-------SRGMDLVEILSFLFQLSFSTLGKDYSVEGM 290
Query: 148 SE 149
S+
Sbjct: 291 SD 292
>gi|71033737|ref|XP_766510.1| hypothetical protein [Theileria parva strain Muguga]
gi|68353467|gb|EAN34227.1| hypothetical protein, conserved [Theileria parva]
Length = 359
Score = 69.7 bits (169), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 44/191 (23%), Positives = 96/191 (50%), Gaps = 43/191 (22%)
Query: 127 ISFLLELSFHVAGEAYNLKTLSEIQRSMIKDFADLGLVKLQQGRKESWF----------- 175
+ LL LS G+ ++ + L++ Q +++ +LG+V + +K +
Sbjct: 83 VELLLSLSQASCGDCFSTEGLTKTQLRLLRLLNELGIVYYKNPKKFYLYDLSYIVGKTNT 142
Query: 176 ---IPTIAD-------------SLETNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVGA 219
+PT D +++NF++Y Y+ S L +L +++ + PNL+VG
Sbjct: 143 NTGLPTSKDLDLSIKAGNDSRIIVQSNFKVYVYTASPLQISVLSHLCELQARTPNLVVGV 202
Query: 220 ITKESLYNAVENGLTAEQ-------QNAHPRVADRIPSVL---------ENVCDQIRLWE 263
+T+ES+ +A ++G+T+++ + + ++ ++L ENVC Q+++WE
Sbjct: 203 LTRESVQSAFKSGITSKEIIRFLSPNGMNSSIGNQENTLLNSTFTYSIPENVCRQLKMWE 262
Query: 264 SDLNRVEMTPA 274
S+ +R+E+ P+
Sbjct: 263 SERDRIELCPS 273
>gi|355693901|gb|AER99490.1| proteinral transcription factor IIH, polypeptide 4, 52kDa [Mustela
putorius furo]
Length = 265
Score = 69.7 bits (169), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 41/119 (34%), Positives = 68/119 (57%), Gaps = 11/119 (9%)
Query: 32 LEAYAIGQWERFLLQLISSAQAERSINFCSSTMKVFQRGLLIQRDK-EAPRLTESGFQFL 90
L+ YA +WE L ++ S A S + + Q GL+ + E P +T +GFQFL
Sbjct: 149 LDKYAEERWEVVLHFMVGSPSAAVSQDLAQ---LLSQAGLMKSTEPGEPPCITSAGFQFL 205
Query: 91 LMDTNAQLWYIVREYISNSQHDSMLAYERGINQADLISFLLELSFHVAGEAYNLKTLSE 149
L+DT AQLWY + +Y+ +Q RG++ +++SFL +LSF G+ Y+++ +S+
Sbjct: 206 LLDTPAQLWYFMLQYLQTAQ-------SRGMDLVEILSFLFQLSFSTLGKDYSVEGMSD 257
>gi|66358470|ref|XP_626413.1| possible transcription factor TFIIH [Cryptosporidium parvum Iowa
II]
gi|46227864|gb|EAK88784.1| possible transcription factor TFIIH [Cryptosporidium parvum Iowa
II]
Length = 709
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 37/109 (33%), Positives = 66/109 (60%), Gaps = 11/109 (10%)
Query: 183 LETNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKESLYNAVENGLTAEQ----- 237
+++NFR+Y Y+ S L +ILR +++ + PN+I G +T++ L +A G++AEQ
Sbjct: 530 VQSNFRIYCYTASPLQAKILRHLCQVKVRGPNIICGILTRKGLLSAYSMGVSAEQILRFF 589
Query: 238 -QNAHPRVADRI----PSVLE-NVCDQIRLWESDLNRVEMTPAHYYDEF 280
NAHP + R S++ NV Q++LWE D NR++++ A + ++
Sbjct: 590 SSNAHPIILRRFMLEGTSIIPVNVETQLKLWEKDKNRLKISHASTFSDW 638
>gi|367009216|ref|XP_003679109.1| hypothetical protein TDEL_0A05660 [Torulaspora delbrueckii]
gi|359746766|emb|CCE89898.1| hypothetical protein TDEL_0A05660 [Torulaspora delbrueckii]
Length = 513
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 39/127 (30%), Positives = 66/127 (51%), Gaps = 24/127 (18%)
Query: 183 LETNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKESLYNAVENGLTAE------ 236
+ETNF++Y+YS S L IL LF ++ + N++ G IT+ES+ A+ NG+TA+
Sbjct: 338 VETNFKLYSYSNSPLQIAILSLFVHLKSRFTNMVTGQITRESIRRALINGITADQIIAYL 397
Query: 237 QQNAHPRV------------------ADRIPSVLENVCDQIRLWESDLNRVEMTPAHYYD 278
Q +AHP++ D + + V DQI+LW+ +L+R+ Y
Sbjct: 398 QTHAHPQMRRLAEEKLEKKLELDANCKDTLQILPPTVVDQIKLWQLELDRIISYDGSLYS 457
Query: 279 EFPSRED 285
+ S ++
Sbjct: 458 DIDSHQE 464
Score = 58.9 bits (141), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 39/151 (25%), Positives = 75/151 (49%), Gaps = 13/151 (8%)
Query: 30 EDLEAYAIGQWERFLLQLISSAQAERSINFCSSTMKVFQRGLLIQRDKEAP--RLTESGF 87
E L+AY+ +WE L ++ ++ A + + + + L++ ++T GF
Sbjct: 136 EMLDAYSADKWETILHFMVGTSLASTP---SGNVLNLLKHSKLMEEVSTTGEFKITNEGF 192
Query: 88 QFLLMDTNAQLWYIVREYISNSQHDSMLAYERGINQADLISFLLELSFHVAGEAYNLKTL 147
QFLL + N+Q+W ++ +Y+ ++ M + ++++F+ L G+ Y++ L
Sbjct: 193 QFLLQEVNSQIWALLLQYLKMTETLQM-------DPVEVLNFIFMLGALEFGKPYSMDGL 245
Query: 148 SEIQRSMIKDFADLGLVKLQQGRKESWFIPT 178
S+ Q+ M KD D GLV Q+ F PT
Sbjct: 246 SDTQKLMSKDMRDYGLV-FQKNSNSKVFYPT 275
>gi|254584224|ref|XP_002497680.1| ZYRO0F11088p [Zygosaccharomyces rouxii]
gi|238940573|emb|CAR28747.1| ZYRO0F11088p [Zygosaccharomyces rouxii]
Length = 509
Score = 68.9 bits (167), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 38/127 (29%), Positives = 67/127 (52%), Gaps = 24/127 (18%)
Query: 183 LETNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKESLYNAVENGLTAEQ----- 237
+ETNF++Y+YS S L IL LF ++ + N++ G +T+ES+ A+ NG+TA+Q
Sbjct: 338 VETNFKLYSYSNSPLQIAILSLFVHMKSRFSNMVTGQLTRESIRQALLNGITADQIIAYL 397
Query: 238 -QNAHPRV------------------ADRIPSVLENVCDQIRLWESDLNRVEMTPAHYYD 278
+AHP++ D + + V DQI+LW+ +L+R+ Y
Sbjct: 398 ETHAHPQMRRMAEEQLEKRLELDPNSKDPLQILPPTVVDQIKLWQLELDRIISFEGSLYS 457
Query: 279 EFPSRED 285
+F + ++
Sbjct: 458 DFENHQE 464
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 48/189 (25%), Positives = 88/189 (46%), Gaps = 20/189 (10%)
Query: 4 WKHLINGGALPREPMPSGITARLP----TLEDLEAYAIGQWERFLLQLISSAQAERSINF 59
+K+ + GG + GI L T + L+ Y+ +WE L ++ ++ A
Sbjct: 109 FKNALTGGEVSNS---FGIVMELDNDTVTTDMLDKYSADKWETILHFMVGTSLAHIP--- 162
Query: 60 CSSTMKVFQRGLLIQRDKEAP--RLTESGFQFLLMDTNAQLWYIVREYISNSQHDSMLAY 117
+ + + + L++ ++T GFQFLL + N+QLW ++ +Y+ ++ M
Sbjct: 163 SENVLNLLKHSKLMEESNTTGEFKITNEGFQFLLQEVNSQLWALLLQYLKMTEMLQM--- 219
Query: 118 ERGINQADLISFLLELSFHVAGEAYNLKTLSEIQRSMIKDFADLGLVKLQQGRKESWFIP 177
+ D+++F+ L + Y+ LSE Q+ M+KD D GLV Q + F P
Sbjct: 220 ----DPVDILNFIFMLGALEFSKPYSTNGLSETQKVMLKDMRDYGLV-FQMNSNANVFYP 274
Query: 178 TIADSLETN 186
T S+ T+
Sbjct: 275 TRLASMLTS 283
>gi|428673252|gb|EKX74165.1| conserved hypothetical protein [Babesia equi]
Length = 668
Score = 68.6 bits (166), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 31/96 (32%), Positives = 61/96 (63%), Gaps = 9/96 (9%)
Query: 183 LETNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKESLYNAVENGLTAEQQNAHP 242
+++NF++Y Y+ + L +IL + +++ + PN++VG +T+ES A ++G+T +H
Sbjct: 496 VQSNFKVYVYTVNNLQFDILNILCEVQARTPNMVVGVLTRESAQRAFKSGIT-----SHE 550
Query: 243 RV----ADRIPSVLENVCDQIRLWESDLNRVEMTPA 274
+ + + ENV Q+R+WE++ NRVE++PA
Sbjct: 551 IIRFFSSTNTSTFPENVIRQLRMWEAERNRVELSPA 586
>gi|84998132|ref|XP_953787.1| TFIIH subunit, Tf2b [Theileria annulata]
gi|65304784|emb|CAI73109.1| TFIIH subunit, Tf2b homologue, putative [Theileria annulata]
Length = 645
Score = 68.6 bits (166), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 43/191 (22%), Positives = 94/191 (49%), Gaps = 43/191 (22%)
Query: 127 ISFLLELSFHVAGEAYNLKTLSEIQRSMIKDFADLGLVKLQQGRK--------------E 172
+ LL LS G+ ++ + L++ Q +++ +LG+V + +K
Sbjct: 370 VELLLSLSQASCGDCFSTEGLTKTQIRLLRLLNELGIVYYKNPKKFYLYDLSYIVGKTNT 429
Query: 173 SWFIPTIAD-------------SLETNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVGA 219
+ +P D +++NF++Y Y+ S L +L +++ + PNL+VG
Sbjct: 430 NSVLPNSKDLDISIKAGNDSRIIVQSNFKVYVYTASPLQISVLSHLCELQARTPNLVVGV 489
Query: 220 ITKESLYNAVENGLTAEQ-------QNAHPRVADRIPSVL---------ENVCDQIRLWE 263
+T+ES+ +A ++G+T+++ + + + ++L ENVC Q+++WE
Sbjct: 490 LTRESVQSAFKSGITSKEIIRFLSPNGMNSSIGSQENTLLNSSFTYSIPENVCRQLKMWE 549
Query: 264 SDLNRVEMTPA 274
S+ +R+E+ P+
Sbjct: 550 SERDRIELCPS 560
>gi|361130709|gb|EHL02459.1| putative RNA polymerase II transcription factor B subunit 2 [Glarea
lozoyensis 74030]
Length = 210
Score = 67.8 bits (164), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 46/172 (26%), Positives = 82/172 (47%), Gaps = 36/172 (20%)
Query: 154 MIKDFADLGLVKLQQGRKESWFIPTIADSLETNFRMY---------AYST---------- 194
M+++ D GLV + K+ +F +A +L ++ A ST
Sbjct: 1 MLENLVDFGLVYIPPSVKDQFFPTRLATTLTSDASALRSITAGFESALSTGSGTAGFIII 60
Query: 195 -----SKLHCEILRLFSKIEYQLPNLIVGAITKESLYNAVENGLTAEQ------QNAHPR 243
S L +L LF+K+ + PN++ G +T+ES+Y AV +G++++Q +AHP
Sbjct: 61 ETNYHSPLQIAVLALFTKLTTRYPNMVTGRVTRESVYRAVSSGISSDQIITYLSTHAHPE 120
Query: 244 VADRI------PSVLENVCDQIRLWESDLNRVEMTPAHYYDEFPSREDSKKM 289
+ P + V DQIRLW+ + R++ T + +F S ++ KK+
Sbjct: 121 LLKASAAKGGGPVLPPTVVDQIRLWQIENERMKTTYGFLFKDFESTDEYKKL 172
>gi|403221352|dbj|BAM39485.1| transcription factor IIH subunit [Theileria orientalis strain
Shintoku]
Length = 634
Score = 67.0 bits (162), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 44/192 (22%), Positives = 94/192 (48%), Gaps = 47/192 (24%)
Query: 127 ISFLLELSFHVAGEAYNLKTLSEIQRSMIKDFADLGLVKLQQGRK--------------- 171
+ LL LS G+ ++ + L++ Q +++ +LG+V + +
Sbjct: 342 VELLLALSQSKCGDCFSTENLTKTQMRLVRLLNELGIVYYKNANRFYIYDLSYIIGKSNI 401
Query: 172 -----ESWFIPTIADS-----LETNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAIT 221
+ + + A + +++NF++Y Y+ S L +L +++ + PNL+VG +T
Sbjct: 402 NVDLFKEFDVNKTAGNESRIIVQSNFKVYVYTASPLQISVLSHLCELQARTPNLVVGVLT 461
Query: 222 KESLYNAVENGLTAEQ------------------QNAHPRVAD-RIPSVLENVCDQIRLW 262
+ES+ +A ++G+T+ + + A+ +IP ENVC Q+++W
Sbjct: 462 RESVQSAFKSGITSNEIIRFLSPMKLSLSYAGTCNSFMDSFANYKIP---ENVCRQLKMW 518
Query: 263 ESDLNRVEMTPA 274
ES+ +R+E++PA
Sbjct: 519 ESERDRIELSPA 530
>gi|440295536|gb|ELP88449.1| TFIIH basal transcription factor complex p52 subunit, putative
[Entamoeba invadens IP1]
Length = 531
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 60/253 (23%), Positives = 115/253 (45%), Gaps = 36/253 (14%)
Query: 36 AIGQWERFLLQLISSAQAERSINFCSSTMKVFQRGLLIQRDKEAPRLTESGFQFLLMDTN 95
A+ +E FL++L++ ++ N S ++F+ L+ + ++T G+QFL +T
Sbjct: 140 AVKMFEDFLMKLLTFNESH---NLPKSAFELFKDLELV--NDAGSQITRKGYQFLFQETK 194
Query: 96 AQLWYIVREYISNSQHDSMLAYERGINQADLISFLLELSFHVAGEAYNLKTLSEIQRSM- 154
Q+W ++ +Q R LI+ EL++ YN ++I +
Sbjct: 195 TQIWILMLSIFGPAQ--------RKRRMGKLINEFFELTYLAPETCYNADPFTKIYSAAP 246
Query: 155 IKDFADLGLVKLQQGRKESWFIPTIA----DSL-------------ETNFRMYAYSTSKL 197
+ F +G++ + + P ++ ++L ETN+ +Y Y+ S
Sbjct: 247 LILFDMMGIIAYSKEKNALVVTPLMSLLRSNALVPSDLVTKPRTITETNYTVYIYTESFF 306
Query: 198 HCEILRLFSKIEYQLPNLIVGAITKESLYNAVENGLTAEQQNAHPRVADRIPSVLENVCD 257
++ LF + QL NL VG IT +++ A G+T E V P++ +N+
Sbjct: 307 QVKLYSLFIRQNLQLTNLCVGRITYDTVTEAFLKGITNEM-----LVNFLQPNLPKNIQA 361
Query: 258 QIRLWESDLNRVE 270
QI LW+ +LNR++
Sbjct: 362 QIDLWKRELNRLK 374
>gi|399949686|gb|AFP65344.1| tfIIB-like protein [Chroomonas mesostigmatica CCMP1168]
Length = 464
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 37/98 (37%), Positives = 58/98 (59%), Gaps = 10/98 (10%)
Query: 183 LETNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKESLYNAVENGLTAE------ 236
+E+NFR+Y Y + L ++L +FS+I YQLPNL VG IT++S+ A +G T+
Sbjct: 331 IESNFRIYVYKNAHLGNDLLLVFSEILYQLPNLFVGEITEKSILKAFNSGSTSRNIIGFL 390
Query: 237 QQNAHPRVADRIPSVLENVCDQIRLWESDLNRVEMTPA 274
+ N HP + IPS V +QI+ WE +++T +
Sbjct: 391 KNNLHP-ICPWIPSA---VTNQIKAWEFQKTEIKITES 424
>gi|60603004|gb|AAX27959.1| unknown [Schistosoma japonicum]
Length = 100
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 33/66 (50%), Positives = 43/66 (65%), Gaps = 6/66 (9%)
Query: 183 LETNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKESLYNAVENGLTAEQ----- 237
LETNFR+YAY+ S L +L LFSKI + PNL+V IT++S+ A+ G+TA Q
Sbjct: 18 LETNFRLYAYTDSPLRTALLSLFSKIRARFPNLVVADITRDSVREALIRGITANQILSFL 77
Query: 238 -QNAHP 242
NAHP
Sbjct: 78 TSNAHP 83
>gi|365758016|gb|EHM99881.1| Tfb2p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
Length = 419
Score = 65.5 bits (158), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 43/153 (28%), Positives = 76/153 (49%), Gaps = 13/153 (8%)
Query: 28 TLEDLEAYAIGQWERFLLQLISSAQAERSINFCSSTMKVFQRGLLIQRDKEAP--RLTES 85
+L+ L+ Y+ +WE L ++ + A+ + + + L++ ++T
Sbjct: 131 SLDLLDEYSANKWETILHFMVGTPLAKIP---SEKVLNLLKHSKLMEEVNSTGEFKITNE 187
Query: 86 GFQFLLMDTNAQLWYIVREYISNSQHDSMLAYERGINQADLISFLLELSFHVAGEAYNLK 145
GFQFLL + N+QLW ++ +Y+ + M + D++ F+ L G+AY +
Sbjct: 188 GFQFLLQEINSQLWTLLLQYLKMIETSKM-------DLVDVLHFIFMLGALEVGKAYKID 240
Query: 146 TLSEIQRSMIKDFADLGLVKLQQGRKESWFIPT 178
LSE QR M++D D GLV Q+ +S F PT
Sbjct: 241 ALSETQRIMLQDMRDYGLV-FQKHLNDSIFYPT 272
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 30/75 (40%), Positives = 50/75 (66%), Gaps = 6/75 (8%)
Query: 176 IPTIADSLETNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKESLYNAVENGLTA 235
IP + +ETNF++Y+YS S L +L LF ++ + N+++G IT+ES+ NA+ NG+TA
Sbjct: 334 IPDGSLIVETNFKIYSYSNSPLQIAVLSLFVHLKARFVNMVLGQITRESIRNALTNGITA 393
Query: 236 EQ------QNAHPRV 244
+Q +AHP++
Sbjct: 394 DQIIAYLETHAHPQM 408
>gi|322711210|gb|EFZ02784.1| TFIIH and nucleotide excision repair factor 3 complexes subunit
(Tfb2), putative [Metarhizium anisopliae ARSEF 23]
Length = 540
Score = 65.1 bits (157), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 44/151 (29%), Positives = 77/151 (50%), Gaps = 9/151 (5%)
Query: 32 LEAYAIGQWERFLLQLISSAQAERSINFCS---STMKVFQRGLLIQRDKEAP-RLTESGF 87
L+ YA +WE L ++SS + + + S ++ G L+ R +T++GF
Sbjct: 172 LDRYARKRWEDILHFVVSSVGYKSTGDVSGPNKSVKELLIAGRLVDRRPNGTIGITQAGF 231
Query: 88 QFLLMDTNAQLWYIVREYISNSQHDSMLAYERGINQADLISFLLELSFHVAGEAYNLKTL 147
FLL + NAQ+W ++ ++ S+ + G+ D++SFL L+ G AY+ L
Sbjct: 232 TFLLQEPNAQVWTLLLLWLEASETNK----AAGLETVDMLSFLFVLASLELGRAYDTNAL 287
Query: 148 SEIQRSMIKDFADLGLVKLQQGRKESWFIPT 178
+E +++M+ D GL+ + Q K S F PT
Sbjct: 288 TEQRKNMLPSLLDFGLIYIPQ-HKRSMFFPT 317
Score = 63.9 bits (154), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 32/93 (34%), Positives = 57/93 (61%), Gaps = 13/93 (13%)
Query: 183 LETNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKESLYNAVENGLTAEQ----- 237
+ETN+R+YAY+ S L +L LF K+ + P+++ G +T+ S++ A+ G++A+Q
Sbjct: 380 VETNYRIYAYTQSTLQIAVLALFCKLNMRFPDMVAGRVTRTSIHQAINFGISADQIISYL 439
Query: 238 -QNAHPR------VADRIPSVLENVCDQIRLWE 263
+AH + +A++ P + V DQIRLW+
Sbjct: 440 AAHAHEQMHRSAALANK-PILPPTVVDQIRLWQ 471
>gi|167395228|ref|XP_001741280.1| TFIIH basal transcription factor complex p52 subunit [Entamoeba
dispar SAW760]
gi|165894177|gb|EDR22239.1| TFIIH basal transcription factor complex p52 subunit, putative
[Entamoeba dispar SAW760]
Length = 489
Score = 65.1 bits (157), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 61/274 (22%), Positives = 122/274 (44%), Gaps = 41/274 (14%)
Query: 32 LEAYAIGQWERFLLQLISSAQAERSINFCSSTMKVFQRGLLIQRDKEAPRLTESGFQFLL 91
L+ I +E F+ +L+ Q N ++ +++F+ L++ +E ++T G+QFL
Sbjct: 137 LKENCIKTFEYFMNKLL---QFNSQPNISNNPLRIFKDLELVK--EETRQITRKGYQFLF 191
Query: 92 MDTNAQLWYIVREYISNSQHDSMLAYERGINQADLISFLLELSFHVAGEAYNLKTLSEIQ 151
+T QLW I+ I +R I + I+ + E+++ YN ++
Sbjct: 192 QETKTQLWVIMLSIIG--------LIQRRI--SPFINDVFEMTYLKENIIYNCDRFKKVY 241
Query: 152 -RSMIKDFADLGLVKLQQGRKESWFIPTIA-----------------DSLETNFRMYAYS 193
++ F DLG++ + + P ++ E N+ +Y Y+
Sbjct: 242 GPDPLQLFNDLGIIVYYKEQNVMAITPLMSLLRSNANIPSDLVKKPKTITEINYSVYIYT 301
Query: 194 TSKLHCEILRLFSKIEYQLPNLIVGAITKESLYNAVENGLTAEQQNAHPRVADRIPSVLE 253
S+ ++ RLF + +QL NL VG + +S+ A G+T+E + P++
Sbjct: 302 ESQFQVDLYRLFIRKNFQLANLWVGKLNHQSVTEAFAKGITSEM-----LINFLQPNLPR 356
Query: 254 NVCDQIRLWESDLNRVE---MTPAHYYDEFPSRE 284
+ QI LW+ ++NR + + +YD+ R+
Sbjct: 357 TIQKQIDLWKKEINRFKEEHVVRYKFYDDAIGRQ 390
>gi|380492949|emb|CCF34234.1| RNA polymerase II transcription factor B subunit 2 [Colletotrichum
higginsianum]
Length = 343
Score = 64.7 bits (156), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 47/173 (27%), Positives = 91/173 (52%), Gaps = 10/173 (5%)
Query: 21 GITARLP-----TLEDLEAYAIGQWERFLLQLISSAQAERS-INFCSSTMK-VFQRGLLI 73
G+ + LP T+ L+ YA +WE L ++++ + + S++K + G L+
Sbjct: 126 GVPSSLPVPPEITVPFLDRYARRKWEDILHYIVNTVNPGGADLGGPKSSVKNLLVAGQLV 185
Query: 74 QRDKEAPRLTESGFQFLLMDTNAQLWYIVREYISNSQHDSMLAYERGINQADLISFLLEL 133
+R A +T++GF FLL + NAQ+W ++ ++ + H A G+ D++SFL L
Sbjct: 186 RRQGSAVGITQAGFTFLLQEANAQVWTLLLLWLEATDHAEDAA---GMESTDMLSFLFLL 242
Query: 134 SFHVAGEAYNLKTLSEIQRSMIKDFADLGLVKLQQGRKESWFIPTIADSLETN 186
+ G AY+ L+E +R+M+ D GL+ + + + +F +A +L ++
Sbjct: 243 ASLELGRAYDTNALTEARRNMLPSLLDFGLIYIPSHKPQQYFPTRLATTLTSS 295
>gi|156086630|ref|XP_001610724.1| hypothetical protein [Babesia bovis T2Bo]
gi|154797977|gb|EDO07156.1| conserved hypothetical protein [Babesia bovis]
Length = 586
Score = 64.3 bits (155), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 46/169 (27%), Positives = 87/169 (51%), Gaps = 23/169 (13%)
Query: 121 INQADLISFLLELSFHVAGEAYNLKTLSEIQRSMIKDFADLGLVKLQQ------GRKESW 174
++Q ++ FL+EL A + ++ + S + D LV+ Q G K S
Sbjct: 338 LSQQRILRFLIELGLVYADSDGSKIYVTNL--SFLVDVKHANLVEEHQISMSVCGNKGSK 395
Query: 175 FIPTIADSLETNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKESLYNAVENGLT 234
+ +++NF++YAY S L +L +++ + PNL++G +T+ SL A ++G+T
Sbjct: 396 MV------VQSNFKIYAYIPSALQMNVLNHICELQAKTPNLVIGVLTRSSLQTAFKSGIT 449
Query: 235 AEQ---------QNAHPRVADRIPSVLENVCDQIRLWESDLNRVEMTPA 274
A+Q Q ++ + +V ENV Q+++WE++ NR+E+ A
Sbjct: 450 ADQLICFFESKGQYDDIQINRNVMNVPENVRRQLKMWEAERNRLELLNA 498
>gi|67483069|ref|XP_656826.1| hypothetical protein [Entamoeba histolytica HM-1:IMSS]
gi|56474050|gb|EAL51440.1| hypothetical protein EHI_192400 [Entamoeba histolytica HM-1:IMSS]
gi|449706224|gb|EMD46115.1| tfiih basal transcription factor complex p52 subunit, putative
[Entamoeba histolytica KU27]
Length = 484
Score = 64.3 bits (155), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 62/274 (22%), Positives = 122/274 (44%), Gaps = 41/274 (14%)
Query: 32 LEAYAIGQWERFLLQLISSAQAERSINFCSSTMKVFQRGLLIQRDKEAPRLTESGFQFLL 91
L+ I +E F+ +L+ Q N ++ +++F+ L++ +E ++T G+QFL
Sbjct: 137 LKENCIKTFEYFMNKLL---QFNSQPNISNNPLRIFKDLELVK--EETRQITRKGYQFLF 191
Query: 92 MDTNAQLWYIVREYISNSQHDSMLAYERGINQADLISFLLELSFHVAGEAYNLKTLSEIQ 151
+T QLW I+ I Q R I + I+ + E+++ YN ++
Sbjct: 192 QETKTQLWVIMLSIIGLIQ--------RRI--SPFINDVFEMTYLKEHIIYNCDHFKKVY 241
Query: 152 -RSMIKDFADLGLVKLQQGRKESWFIPTIA-----------------DSLETNFRMYAYS 193
++ F DLG++ + + P ++ E N+ +Y Y+
Sbjct: 242 GPDPLQLFNDLGIIVYYKEQNVMAITPLMSLLRSNANIPSDLVKKPKTITEINYSVYIYT 301
Query: 194 TSKLHCEILRLFSKIEYQLPNLIVGAITKESLYNAVENGLTAEQQNAHPRVADRIPSVLE 253
S+ ++ RLF + +QL NL VG + +S+ A G+T+E + P++
Sbjct: 302 ESQFQVDLYRLFIRKNFQLANLWVGKLNHQSVTEAFAKGITSEM-----LINFLQPNLPR 356
Query: 254 NVCDQIRLWESDLNRVE---MTPAHYYDEFPSRE 284
+ QI LW+ ++NR + + +YD+ R+
Sbjct: 357 TIQKQIDLWKKEINRFKEEHVVRYRFYDDAIGRQ 390
>gi|209880858|ref|XP_002141868.1| hypothetical protein [Cryptosporidium muris RN66]
gi|209557474|gb|EEA07519.1| hypothetical protein, conserved [Cryptosporidium muris RN66]
Length = 794
Score = 63.9 bits (154), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 38/127 (29%), Positives = 68/127 (53%), Gaps = 12/127 (9%)
Query: 183 LETNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKESLYNAVENGLTAEQ----- 237
+++NFR+Y Y+ S L +ILR +++ + PN+I G +T+ L +A G+ A Q
Sbjct: 608 VQSNFRVYCYTASPLQAKILRHLCQVKVRGPNIICGVLTRRGLLSAYSMGVKAYQILRFF 667
Query: 238 -QNAHP-----RVADRIPSVLENVCDQIRLWESDLNRVEMTPAHYYDEFP-SREDSKKMR 290
NAHP + D + +V Q++LWE+D NR+E+ + ++ ++ED + +
Sbjct: 668 ISNAHPIILKKHITDGTSIIPISVETQLKLWENDHNRLEINKVSLFSDWGNNKEDIELFK 727
Query: 291 LVVNAEI 297
V I
Sbjct: 728 QTVTYAI 734
>gi|389586531|dbj|GAB69260.1| hypothetical protein PCYB_146880 [Plasmodium cynomolgi strain B]
Length = 913
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 33/104 (31%), Positives = 60/104 (57%), Gaps = 6/104 (5%)
Query: 183 LETNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKESLYNAVENGLTAEQ----- 237
+++NF++Y Y+ S L IL +++ + PN++VG +T+ S+ NA + +TA Q
Sbjct: 735 VQSNFKVYLYTNSTLKINILSHLCELQARTPNMVVGILTRRSVLNAYNSDITANQIIKFL 794
Query: 238 -QNAHPRVADRIPSVLENVCDQIRLWESDLNRVEMTPAHYYDEF 280
AHP ++ S+ NV Q++LWES+ +R+ + A + F
Sbjct: 795 ESYAHPGRSNFKSSIPVNVITQLKLWESERHRLTLDDAIVFKSF 838
>gi|123488965|ref|XP_001325283.1| hypothetical protein [Trichomonas vaginalis G3]
gi|121908180|gb|EAY13060.1| hypothetical protein TVAG_212420 [Trichomonas vaginalis G3]
Length = 460
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 51/214 (23%), Positives = 93/214 (43%), Gaps = 41/214 (19%)
Query: 82 LTESGFQFLLMDTNAQLWYIVREYISNSQHDSMLAYERGINQADLISFLLELSFHVAGEA 141
L G +FLL+ Q+W IV+ Y L + + ++ + + FLL++ +
Sbjct: 196 LCPKGHRFLLLSPKEQIWRIVKCY---------LKFTKDLHSS--LRFLLKIGSMELSKG 244
Query: 142 YNLKTLSEIQRSMIKDFADLGLVKLQQGRKESWFIPT------IADS----------LET 185
Y + +L+ Q+ ++ F +GLV + +F PT S ++T
Sbjct: 245 YPITSLTPTQKELLSPFKTIGLVYIDG----DYFYPTKSILNFFGKSNIFQTEGWMLIDT 300
Query: 186 NFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKESLYNAVENGLTAE------QQN 239
NF++ A+ S LH +L+ F+ + Y+ P I+ S A+ G T + + N
Sbjct: 301 NFKITAFPKSPLHTALLKKFANVTYEFPGFASAFISPNSFREALNQGTTLDDIIGFLKSN 360
Query: 240 -AHPRVADRIPSVLENVCDQIRLWESDLNRVEMT 272
+H + +IPS V Q +W R+ +T
Sbjct: 361 LSHKIGSGQIPSA---VMKQFYVWRDQRERLTVT 391
>gi|221061889|ref|XP_002262514.1| hypothetical protein, conserved in Apicomplexan species [Plasmodium
knowlesi strain H]
gi|193811664|emb|CAQ42392.1| hypothetical protein, conserved in Apicomplexan species [Plasmodium
knowlesi strain H]
Length = 943
Score = 62.4 bits (150), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 33/104 (31%), Positives = 60/104 (57%), Gaps = 6/104 (5%)
Query: 183 LETNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKESLYNAVENGLTAEQ----- 237
+++NF++Y Y+ S L IL +++ + PN++VG +T+ S+ NA + +TA Q
Sbjct: 765 VQSNFKVYLYTNSTLKINILSHLCELQARTPNMVVGILTRRSVLNAYNSDITANQIIKFL 824
Query: 238 -QNAHPRVADRIPSVLENVCDQIRLWESDLNRVEMTPAHYYDEF 280
AHP ++ S+ NV Q++LWES+ +R+ + A + F
Sbjct: 825 ESYAHPGRSNFKSSIPVNVITQLKLWESERHRLTLDDAIVFKSF 868
>gi|443919931|gb|ELU39967.1| Tfb2 domain-containing protein [Rhizoctonia solani AG-1 IA]
Length = 302
Score = 62.0 bits (149), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 48/179 (26%), Positives = 86/179 (48%), Gaps = 13/179 (7%)
Query: 17 PMPSGITARLPTLEDLEAYAIGQWERFLLQLISSAQAERSINFCSSTMKVFQRGLLIQRD 76
P+PS ++++ ++E L+ A+ WE L ++ + + + + + V L R
Sbjct: 127 PVPSRGSSQM-SIEQLDRKALEHWETILHYMVDTNSSAQRPGGGALHLLVAGGWLEEGRG 185
Query: 77 KEAPRLTESGFQFLLMDTNAQLWYIVREYISNSQHDSMLAYERGINQADLISFLLELSFH 136
+T +GFQFLL AQLW I+ +Y+ S R ++ A+++SFL LS
Sbjct: 186 GGGHEITSTGFQFLLQSPRAQLWDILLQYLHMSD-------ARRMDIAEVLSFLFMLSLM 238
Query: 137 VAGEAYNLKTLSEIQRSMIKDFADLGLVKLQQGRKESWFIPTIADSLETNFRMYAYSTS 195
G+ Y+ LS Q +M+ D D G+ +S++ +A +L ++ STS
Sbjct: 239 KLGQEYSCDNLSPTQNAMMTDLKDYGI-----NANKSFYPTRLATTLTSSLPPLPPSTS 292
>gi|156095867|ref|XP_001613968.1| hypothetical protein [Plasmodium vivax Sal-1]
gi|148802842|gb|EDL44241.1| hypothetical protein, conserved [Plasmodium vivax]
Length = 960
Score = 61.6 bits (148), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 33/104 (31%), Positives = 59/104 (56%), Gaps = 6/104 (5%)
Query: 183 LETNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKESLYNAVENGLTAEQ----- 237
+++NF++Y Y+ S L IL +++ + PN++VG +T+ S+ NA + +TA Q
Sbjct: 782 VQSNFKVYLYTNSTLKINILSHLCELQARTPNMVVGILTRRSVLNAYNSDITANQIIKFL 841
Query: 238 -QNAHPRVADRIPSVLENVCDQIRLWESDLNRVEMTPAHYYDEF 280
AHP + S+ NV Q++LWES+ +R+ + A + F
Sbjct: 842 ESYAHPGRSTFKSSIPVNVITQLKLWESERHRLTLDDAIVFKSF 885
>gi|238570605|ref|XP_002386883.1| hypothetical protein MPER_14683 [Moniliophthora perniciosa FA553]
gi|215440101|gb|EEB87813.1| hypothetical protein MPER_14683 [Moniliophthora perniciosa FA553]
Length = 69
Score = 61.6 bits (148), Expect = 5e-07, Method: Composition-based stats.
Identities = 29/60 (48%), Positives = 43/60 (71%), Gaps = 5/60 (8%)
Query: 183 LETNFRMYAYSTS-----KLHCEILRLFSKIEYQLPNLIVGAITKESLYNAVENGLTAEQ 237
LETN+R+YAY+ S L IL LF ++Y+ PNL+VG+IT+ES+ A+ NG++A+Q
Sbjct: 10 LETNYRVYAYTGSFSLHNPLQTAILHLFVSLKYRFPNLVVGSITRESVKKALSNGISADQ 69
>gi|124806778|ref|XP_001350829.1| transcription factor Tfb2, putative [Plasmodium falciparum 3D7]
gi|23496958|gb|AAN36509.1| transcription factor Tfb2, putative [Plasmodium falciparum 3D7]
Length = 945
Score = 60.5 bits (145), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 32/104 (30%), Positives = 60/104 (57%), Gaps = 6/104 (5%)
Query: 183 LETNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKESLYNAVENGLTAEQ----- 237
+++NF++Y Y++S L IL +++ + PN++VG +T+ S+ NA + +TA Q
Sbjct: 768 VQSNFKVYLYTSSLLKINILSHLCELQARTPNMVVGILTRRSVLNAYNSDITANQIIKFL 827
Query: 238 -QNAHPRVADRIPSVLENVCDQIRLWESDLNRVEMTPAHYYDEF 280
+HP + S+ NV Q++LWES+ +R+ + A + F
Sbjct: 828 ESYSHPGKNNFKSSIPMNVITQLKLWESERHRLTLEDAIVFKSF 871
>gi|429854513|gb|ELA29524.1| tfiih and nucleotide excision repair factor 3 complexes subunit
[Colletotrichum gloeosporioides Nara gc5]
Length = 509
Score = 60.5 bits (145), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 35/95 (36%), Positives = 53/95 (55%), Gaps = 11/95 (11%)
Query: 183 LETNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKESLYNAVENGLTAEQ----- 237
+ETN+R+YAY + L +L LF K++ + +++ G +T+ S+ NAVE G+TA+Q
Sbjct: 375 VETNYRVYAYGQTPLQIAVLSLFCKLKLRFADMVSGRLTRNSIRNAVERGITADQIISYL 434
Query: 238 -----QNAHPRVADRIPSVL-ENVCDQIRLWESDL 266
+ H A R VL V DQIRL D+
Sbjct: 435 ASHAHEQMHRFAAVRNKPVLPPTVIDQIRLEYEDI 469
>gi|340508252|gb|EGR33999.1| hypothetical protein IMG5_027880 [Ichthyophthirius multifiliis]
Length = 454
Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 53/189 (28%), Positives = 84/189 (44%), Gaps = 46/189 (24%)
Query: 88 QFLLMDTNAQLWYIVREYISNSQHDSMLAYERGINQADLISFLLELSFHVAGEAYNLKTL 147
+F+L DTNAQ+ I+ Y + A I + D+I+F++ LS + Y
Sbjct: 189 EFILQDTNAQIHQILFYYCQ------VFAQMENIEEEDIINFIITLSNLDVNKTYFFNYR 242
Query: 148 SEIQRS------------MIKDFADLGLVK-LQQGRKESWF---------------IPTI 179
SE + ++ D A LG++K G+++ F I TI
Sbjct: 243 SEYAKKQNIDQKFTFELKILSDLAKLGMIKEFDLGQQKKVFGITPLIWQFCYRSIDIKTI 302
Query: 180 ADSL--ETNFRMYAY----------STSKLHCEILRLFSKIEYQLPNLIVGAITKESLYN 227
+ ETNF +YAY S SK ++L+ FSKI Y P+LIV +T+ +
Sbjct: 303 NAKIIVETNFNLYAYLDYNPQNKTFSESKYIRDLLKKFSKIHYTFPHLIVAQLTEAKMKQ 362
Query: 228 AVENGLTAE 236
A G+T++
Sbjct: 363 AFNQGITSK 371
>gi|160331881|ref|XP_001712647.1| hypothetical protein HAN_3g523 [Hemiselmis andersenii]
gi|159766096|gb|ABW98322.1| hypothetical protein HAN_3g523 [Hemiselmis andersenii]
Length = 432
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 36/114 (31%), Positives = 64/114 (56%), Gaps = 12/114 (10%)
Query: 166 LQQGRKESWFIPT--IADSLETNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKE 223
+Q + E +PT I +E+N+R+Y Y + + ++ +FS+I Y LPN VG IT+
Sbjct: 283 IQDNKIEKTKLPTKKIQIIIESNYRIYVYQKNSNNNQLFLIFSEILYILPNFFVGEITET 342
Query: 224 SLYNAVENGLTAE------QQNAHPRVADRIPSVLENVCDQIRLWESDLNRVEM 271
S+ A+++G+T + ++N H V IPS + +Q RLWE ++++
Sbjct: 343 SISRALKSGITIQNILGFIRENLHC-VCRSIPST---ILNQFRLWEFQKKKIKI 392
>gi|258577869|ref|XP_002543116.1| conserved hypothetical protein [Uncinocarpus reesii 1704]
gi|237903382|gb|EEP77783.1| conserved hypothetical protein [Uncinocarpus reesii 1704]
Length = 311
Score = 57.4 bits (137), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 50/192 (26%), Positives = 84/192 (43%), Gaps = 16/192 (8%)
Query: 11 GALPREPMPSGITARLPTLEDLEAYAIGQWERFLLQLISS---AQAERSINFCSSTMKVF 67
G + P P +T + DL+ YA QWE L ++ + S+ +
Sbjct: 122 GVISTTPDPQPMT-----IADLDDYARRQWEGVLGYMVGTNTLGIQRESVTLSKGVKSLL 176
Query: 68 QRGLLIQRDKEAPRLTESGFQFLLMDTNAQLWYIVREYISNSQHDSMLAYERGINQADLI 127
Q L++ +T+ GF F+L D N Q+W+I+ Y+ N++ G++ +++
Sbjct: 177 QACHLVEVRDRRVEITKEGFAFVLQDVNTQVWHILVLYVENAE-------AIGMDSVEVL 229
Query: 128 SFLLELSFHVAGEAYNLKTLSEIQRSMIKDFADLGLVKLQQGRKESW-FIPTIADSLETN 186
SFL LS G++Y + LS Q + D D G+V E+ F PT + T+
Sbjct: 230 SFLFLLSSLELGQSYEKQHLSSTQLRTLADLTDFGIVYQHSPASEATRFYPTRLATTLTS 289
Query: 187 FRMYAYSTSKLH 198
M S +H
Sbjct: 290 DSMALASPMSVH 301
>gi|145509120|ref|XP_001440504.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124407721|emb|CAK73107.1| unnamed protein product [Paramecium tetraurelia]
Length = 400
Score = 57.4 bits (137), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 45/172 (26%), Positives = 82/172 (47%), Gaps = 34/172 (19%)
Query: 86 GFQFLLMDTNAQLWYIVREYISNSQHDSMLAYERGINQADLISFLLELSFHVAGEAYNLK 145
GF F+L T+ Q+ I++ Y++ ++++ F+L LS + Y +
Sbjct: 177 GFSFILSSTHKQINQILKYYVTKQS-------------SNVVRFILCLSVLDPMKIYQMP 223
Query: 146 TLSEIQRSMIKDFADLGLVKLQQGRKESWFI--------PTIADSL------ETNFRMYA 191
E Q+++IKD + GL Q + F+ P+++ + E NFR+YA
Sbjct: 224 N-EEWQKNVIKDLQEFGLTHYQDQQMRITFLFWNFLYEPPSVSIGIQCNIIVEANFRIYA 282
Query: 192 YSTS------KLHCEILRLFSKIEYQLPNLIVGAITKESLYNAVENGLTAEQ 237
Y S ++ C +L LFS+I+ + LI+ +++ S+ AV L A+Q
Sbjct: 283 YLNSGDQQEEEILCNLLNLFSEIKKRFKILIIADLSESSIRKAVRENLQAKQ 334
>gi|399219100|emb|CCF75987.1| unnamed protein product [Babesia microti strain RI]
Length = 612
Score = 57.4 bits (137), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 27/99 (27%), Positives = 56/99 (56%), Gaps = 10/99 (10%)
Query: 183 LETNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKESLYNAVENGLTAEQ----- 237
+++NF++Y Y+ S L +L +++ + PNL++G +T+ S + A G+TA+Q
Sbjct: 434 VQSNFKVYVYTASPLQINVLAHLCELQSRTPNLVIGVLTRASAHAAFRAGITAKQICQFL 493
Query: 238 -QNAHPRVADRI----PSVLENVCDQIRLWESDLNRVEM 271
++HP + + + NV Q+ +WE++ NR+ +
Sbjct: 494 ETHSHPILLQNVREGGSYLPNNVVTQLNMWEAERNRISL 532
>gi|82704497|ref|XP_726580.1| hypothetical protein [Plasmodium yoelii yoelii 17XNL]
gi|23482045|gb|EAA18145.1| Drosophila melanogaster LD30622p-related [Plasmodium yoelii yoelii]
Length = 926
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/105 (28%), Positives = 63/105 (60%), Gaps = 8/105 (7%)
Query: 183 LETNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKESLYNAVENGLTAEQ----- 237
+++NF++Y Y++S L IL +++ + PN++VG +T+ S+ NA + +TA+Q
Sbjct: 748 IQSNFKVYLYTSSILKINILSHLCELQARTPNMVVGILTRRSVLNAYNSDITADQIIKFL 807
Query: 238 -QNAHPRVADRIPSVLE-NVCDQIRLWESDLNRVEMTPAHYYDEF 280
+HP ++ S++ NV Q++LWE++ +R+ + + + F
Sbjct: 808 ESYSHPGKT-KLKSIIPINVITQLKLWEAERHRLTLEDSIVFKNF 851
>gi|70950974|ref|XP_744765.1| hypothetical protein [Plasmodium chabaudi chabaudi]
gi|56524852|emb|CAH80923.1| conserved hypothetical protein [Plasmodium chabaudi chabaudi]
Length = 922
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/105 (28%), Positives = 63/105 (60%), Gaps = 8/105 (7%)
Query: 183 LETNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKESLYNAVENGLTAEQ----- 237
+++NF++Y Y++S L IL +++ + PN++VG +T+ S+ NA + +TA+Q
Sbjct: 744 IQSNFKVYLYTSSILKINILSHLCELQARTPNMVVGILTRRSVLNAYNSDITADQIIKFL 803
Query: 238 -QNAHPRVADRIPSVLE-NVCDQIRLWESDLNRVEMTPAHYYDEF 280
+HP ++ S++ NV Q++LWE++ +R+ + + + F
Sbjct: 804 ESYSHPGKT-KLKSIIPINVITQLKLWEAERHRLTLEDSIVFKNF 847
>gi|68070707|ref|XP_677265.1| hypothetical protein [Plasmodium berghei strain ANKA]
gi|56497310|emb|CAH94094.1| conserved hypothetical protein [Plasmodium berghei]
Length = 929
Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 59/94 (62%), Gaps = 8/94 (8%)
Query: 183 LETNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKESLYNAVENGLTAEQ----- 237
+++NF++Y Y++S L IL +++ + PN++VG +T+ S+ NA + +TA+Q
Sbjct: 751 IQSNFKVYLYTSSILKINILSHLCELQARTPNMVVGILTRRSVLNAYNSDITADQIIKFL 810
Query: 238 -QNAHPRVADRIPSVLE-NVCDQIRLWESDLNRV 269
+HP ++ S++ NV Q++LWE++ +R+
Sbjct: 811 ESYSHPGKT-KLKSIIPINVITQLKLWEAERHRL 843
>gi|85857462|gb|ABC86267.1| RE43632p [Drosophila melanogaster]
Length = 280
Score = 54.3 bits (129), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 30/107 (28%), Positives = 56/107 (52%), Gaps = 10/107 (9%)
Query: 32 LEAYAIGQWERFLLQLISSAQ--AERSINFCSSTMKVFQRGLLIQRD-KEAPRLTESGFQ 88
L+ YA+ +W L ++ + + +++ L++RD ++ +T GFQ
Sbjct: 170 LDTYAMSRWRCVLHYMVGTGNRNGTDAEAISPDAVRILLHANLMKRDERDGITITRQGFQ 229
Query: 89 FLLMDTNAQLWYIVREYISNSQHDSMLAYERGINQADLISFLLELSF 135
FLL+DT AQ+W+ + +Y+ + ERGI+ + +S L +LSF
Sbjct: 230 FLLLDTRAQVWHFMLQYLDTCE-------ERGISLPECLSMLFQLSF 269
>gi|330038479|ref|XP_003239608.1| TATA binding protein of transcription factor IIB-like protein
[Cryptomonas paramecium]
gi|327206532|gb|AEA38710.1| TATA binding protein of transcription factor IIB-like protein
[Cryptomonas paramecium]
Length = 467
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 47/85 (55%), Gaps = 6/85 (7%)
Query: 183 LETNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKESLYNAVENGLTAEQQNAHP 242
+E+N+R+YAY+ + +IL F + Y LP L VG I K S++ A+ G+ A +N
Sbjct: 321 IESNYRVYAYNNNTFLNKILIQFCDLIYNLPGLFVGEINKTSIHKAIHKGINA--KNIIS 378
Query: 243 RVADRIPSVLENVC----DQIRLWE 263
+ + +N C +QIR+WE
Sbjct: 379 FILKNSHYIHQNSCNPIINQIRIWE 403
>gi|308460920|ref|XP_003092758.1| hypothetical protein CRE_20976 [Caenorhabditis remanei]
gi|308252517|gb|EFO96469.1| hypothetical protein CRE_20976 [Caenorhabditis remanei]
Length = 128
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 34/117 (29%), Positives = 60/117 (51%), Gaps = 27/117 (23%)
Query: 217 VGAITKESLYNAVENGLTAEQ------QNAHPRV---ADRIPSVLENVCDQIRLWESDLN 267
VG IT+ES+ A+++G+TA Q NAHP+ + I + V DQIRLWE +
Sbjct: 3 VGMITRESVRGALQHGITAAQIISFLRANAHPQCIATSGAINCLPITVADQIRLWEDERR 62
Query: 268 RVEMTPAHYYDEFPSRED------------------SKKMRLVVNAEIHMHMREFLR 306
R+++ A+ Y F S ++ +++ ++VN E H ++R++ +
Sbjct: 63 RMDLKDAYIYSHFESEDEFQGVCDYAQERGILLWANAQQKLVIVNEEGHEYVRQWYK 119
>gi|146161819|ref|XP_001033510.2| hypothetical protein TTHERM_00313290 [Tetrahymena thermophila]
gi|146142827|gb|EAR85847.2| hypothetical protein TTHERM_00313290 [Tetrahymena thermophila
SB210]
Length = 484
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 69/258 (26%), Positives = 107/258 (41%), Gaps = 68/258 (26%)
Query: 32 LEAYAIGQWERFLLQLISSAQAERSINFCSS---------TMKVFQRGLLIQRDKEAPRL 82
LE A QW+ QL+ AQ IN SS M VF++ L ++ P
Sbjct: 150 LEGKAKNQWKSICNQLMLMAQ---EINNTSSQSQSKYSRLVMDVFRQILSVE-----PGN 201
Query: 83 TESGFQ----FLLMDTNAQLWYIVREYISNSQHDSMLAYERGINQADLISFLLELS---- 134
SG+Q F+L DTN Q+ I+ Y + ++ E + SFLL LS
Sbjct: 202 LGSGYQKYMEFILEDTNTQIDKILTLYCYQYSRNHKISVETAV------SFLLTLSNLDI 255
Query: 135 FHVAGEAYNLKTLSEIQRSM--IKDFADLGLV---KLQQGRKESWFIPTI---------- 179
+ YN +T + R + + D LG+V ++ + R + P +
Sbjct: 256 TKIYQNTYNNETATFQPRELEFLNDLHSLGMVFKKEILKDRIAFYITPVLWQFCYRKIDL 315
Query: 180 -----ADSLETNFRMYAY-------------STSKLHCE----ILRLFSKIEYQLPNLIV 217
++ETNF +YAY T K E +L F + Y+ P+LIV
Sbjct: 316 KTLNAKITIETNFNVYAYIDQEDPKEIKDSKDTLKDQTEHIEKLLASFCDLHYKFPHLIV 375
Query: 218 GAITKESLYNAVENGLTA 235
G ++++ + +NGLTA
Sbjct: 376 GQLSEQKTKDQFKNGLTA 393
>gi|158302621|ref|XP_561433.2| Anopheles gambiae str. PEST AGAP012880-PA [Anopheles gambiae str.
PEST]
gi|157021114|gb|EAL42401.2| AGAP012880-PA [Anopheles gambiae str. PEST]
Length = 244
Score = 47.4 bits (111), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 46/80 (57%), Gaps = 6/80 (7%)
Query: 32 LEAYAIGQWERFLLQLISSAQAERSI---NFCSSTMKVFQRGLLIQRDKE--APRLTESG 86
L+ YA+ +W R +L + A + + + +++ L++RD+ +P +T G
Sbjct: 165 LDTYAMSRW-RCVLHYMVGAGSSKGMEGEGISPDAVRILLHANLMKRDESDGSPVITRQG 223
Query: 87 FQFLLMDTNAQLWYIVREYI 106
FQFLL+DT AQ+W+ + +Y+
Sbjct: 224 FQFLLLDTQAQVWHFMLQYL 243
>gi|302831319|ref|XP_002947225.1| hypothetical protein VOLCADRAFT_35893 [Volvox carteri f.
nagariensis]
gi|300267632|gb|EFJ51815.1| hypothetical protein VOLCADRAFT_35893 [Volvox carteri f.
nagariensis]
Length = 90
Score = 47.4 bits (111), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 21/44 (47%), Positives = 26/44 (59%)
Query: 241 HPRVADRIPSVLENVCDQIRLWESDLNRVEMTPAHYYDEFPSRE 284
HP +A R P V E V DQIRLWE+ +NR+ Y+ SRE
Sbjct: 16 HPSIASRTPVVPEVVSDQIRLWEASMNRLRADSVVLYENLASRE 59
>gi|241654873|ref|XP_002411342.1| transcription factor IIH (TFIIH), putative [Ixodes scapularis]
gi|215503972|gb|EEC13466.1| transcription factor IIH (TFIIH), putative [Ixodes scapularis]
Length = 218
Score = 47.0 bits (110), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 44/78 (56%), Gaps = 6/78 (7%)
Query: 32 LEAYAIGQWERFLLQLISSAQAERSINFCSSTMKVFQRGLLIQRDKE---APRLTESGFQ 88
L+ YA+ +WE L ++ E + +++ L++ ++E AP +T GFQ
Sbjct: 143 LDRYAMERWECVLHFMVGCHTKE---GISADAVRILLHAGLMKSEEEEGSAPLITMEGFQ 199
Query: 89 FLLMDTNAQLWYIVREYI 106
FLLMDT +Q+W+ V +Y+
Sbjct: 200 FLLMDTASQVWHFVLQYL 217
>gi|324515605|gb|ADY46257.1| General transcription factor IIH subunit 4 [Ascaris suum]
Length = 245
Score = 47.0 bits (110), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 57/234 (24%), Positives = 101/234 (43%), Gaps = 55/234 (23%)
Query: 24 ARLPTLEDLEAYAIGQWERFLLQL-ISSAQAERSINFCSSTMKVFQR-GLLIQRDKEAP- 80
+R +DL A +WE L L + S ++E+ ++ +T ++F+ GL + E
Sbjct: 19 SRKSASKDLGKKATERWECILHYLALPSQKSEQGVS--GATKQLFRAAGLTSGGESEGDM 76
Query: 81 RLTESGFQFLLMDTNAQLWYIVREYISNSQHDSMLAYERGINQADLISFLLELSFHVAGE 140
+T +GFQFLL++ Q+W + Y+ L G N + FLL+L+ V
Sbjct: 77 EITSAGFQFLLLNQTEQIWMYILHYLR-------LEESMGKNVMAELDFLLKLTLCVDHT 129
Query: 141 AYNLK---------------------TLSEIQRSMIKDFADLGLVKLQQGRKESWFIP-- 177
N + + SE + + +LGLV +++ + +FI
Sbjct: 130 HTNGRLRVVDGDREKKATWRAFFIDESWSETITNFLMQLRELGLVFIRKRKDGYFFITPL 189
Query: 178 ----TIADS----------------LETNFRMYAYSTSKLHCEILRLFSKIEYQ 211
T++ S +ETN+R+YAY+ S L IL F+++ Y+
Sbjct: 190 FAHLTVSSSSETAVAEKRTHSGYIIVETNYRVYAYTDSSLQLAILSTFTEMLYR 243
>gi|380476902|emb|CCF44454.1| RNA polymerase II transcription factor B subunit 2 [Colletotrichum
higginsianum]
Length = 126
Score = 43.9 bits (102), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 40/79 (50%), Gaps = 11/79 (13%)
Query: 215 LIVGAITKESLYNAVENGLTAEQ----------QNAHPRVADRIPSVL-ENVCDQIRLWE 263
++ G +T+ S+ NAVE G+TA+Q + H A R VL V DQIRLW+
Sbjct: 1 MVSGRLTRNSIRNAVERGITADQIISYLAAHAHEQMHRMAAVRSRPVLPPTVVDQIRLWQ 60
Query: 264 SDLNRVEMTPAHYYDEFPS 282
+ R+ T + +F S
Sbjct: 61 LETERMTTTSGFLFRDFDS 79
>gi|294950275|ref|XP_002786548.1| tfiih, polypeptide, putative [Perkinsus marinus ATCC 50983]
gi|239900840|gb|EER18344.1| tfiih, polypeptide, putative [Perkinsus marinus ATCC 50983]
Length = 580
Score = 43.1 bits (100), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 36/135 (26%), Positives = 60/135 (44%), Gaps = 46/135 (34%)
Query: 183 LETNFRMYAYSTSKLHCEILRLFSKIEYQL-------PN---LIVGAITKESLYNAVENG 232
+++NF + AY+TS L +L F +++ QL PN ++G +T+ S+ +A + G
Sbjct: 397 VDSNFAVTAYTTSSLDLRLLGTFVQLQRQLGDGREYDPNDFGCVLGTLTQSSVQSAAQRG 456
Query: 233 LTAE------QQNAHPRVA-------------------------DRIPSVLENVCDQIRL 261
+T+E + + PR A D IP+ NV QI L
Sbjct: 457 VTSEYIISYLKSHVDPRAAHMGSQGGRSSAATANTGAARGEKFIDGIPA---NVVTQITL 513
Query: 262 WESDL--NRVEMTPA 274
WE + NR+ + P
Sbjct: 514 WEREAIHNRLRIDPG 528
>gi|300122496|emb|CBK23066.2| unnamed protein product [Blastocystis hominis]
Length = 339
Score = 42.7 bits (99), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 42/181 (23%), Positives = 75/181 (41%), Gaps = 48/181 (26%)
Query: 61 SSTMKVFQRGLLIQRDKEAP-RLTESGFQFLLMDTNAQLWYIVREYISNSQHDSMLAYER 119
S F R L++ D A +T +G+QFL+ Q W+++ +I+++
Sbjct: 161 SEVRDCFLRCKLLRADSAAKFAITATGYQFLMKSYRDQAWWLLHPHITSA---------- 210
Query: 120 GINQADLISFLLELSFHVAGEAYNLKTLSEIQRSMIKD---------------------- 157
N +SFL L + AY++ LSE QR +++
Sbjct: 211 --NALPALSFLFSLRHMIPCRAYDVAALSEPQRQLLEIARIAGVVYTPTTAGKRVFFATP 268
Query: 158 -----FADLGLVKLQQGRKES--WFIP---TIADSLETNFRMYAY---STSKLHCEILRL 204
F G + + GRK F+ ++ +E NF +YA+ + ++LH ++LR
Sbjct: 269 LGAALFTQEGASRGEGGRKSGGEGFMKAEGSMRVVIEANFHVYAFGLLAENRLHVQLLRQ 328
Query: 205 F 205
F
Sbjct: 329 F 329
>gi|162605818|ref|XP_001713424.1| hypothetical protein GTHECHR3089 [Guillardia theta]
gi|13794356|gb|AAK39733.1|AF083031_90 hypothetical protein [Guillardia theta]
Length = 180
Score = 42.4 bits (98), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 42/92 (45%), Gaps = 10/92 (10%)
Query: 183 LETNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKESLYNAVENGLTAE------ 236
+E NFR+Y + + SK Y LP VG I + + G+T++
Sbjct: 47 IEVNFRIYIFKYFDFSNSFFKFISKKIYSLPYFYVGEINENYSRRLFQLGVTSDNILKFI 106
Query: 237 QQNAHPRVADRIPSVLENVCDQIRLWESDLNR 268
++N H ++IPS E D++R+WE +
Sbjct: 107 KKNLH-YTCNKIPSTFE---DRLRIWEISFKK 134
>gi|414589532|tpg|DAA40103.1| TPA: hypothetical protein ZEAMMB73_417245 [Zea mays]
Length = 877
Score = 42.0 bits (97), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 18/39 (46%), Positives = 28/39 (71%), Gaps = 9/39 (23%)
Query: 263 ESDLNRVEMTPAHYYDEFPSR---------EDSKKMRLV 292
++DLNRVEM P++ Y++FPS+ +DSK+MRL+
Sbjct: 824 QTDLNRVEMIPSYLYEDFPSKARDNGYLLCDDSKRMRLI 862
>gi|398024082|ref|XP_003865202.1| hypothetical protein, conserved [Leishmania donovani]
gi|322503439|emb|CBZ38524.1| hypothetical protein, conserved [Leishmania donovani]
Length = 557
Score = 38.9 bits (89), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 38/71 (53%), Gaps = 7/71 (9%)
Query: 184 ETNFRMYAYSTSKLHCEILRLFSKIEYQL-PNLIVGAITKESLYNAVENGLTAEQQ---- 238
ETNFR+YAY+ IL F+K+E + NL +T++S +A+ G+TA Q
Sbjct: 360 ETNFRLYAYTDDADLLNILNQFAKLEEIVNGNLHCYRVTRDSFASAMRKGITAAQVLRFL 419
Query: 239 --NAHPRVADR 247
AHP + R
Sbjct: 420 SLRAHPSMLRR 430
>gi|146103275|ref|XP_001469523.1| conserved hypothetical protein [Leishmania infantum JPCM5]
gi|134073893|emb|CAM72632.1| conserved hypothetical protein [Leishmania infantum JPCM5]
Length = 557
Score = 38.9 bits (89), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 38/71 (53%), Gaps = 7/71 (9%)
Query: 184 ETNFRMYAYSTSKLHCEILRLFSKIEYQL-PNLIVGAITKESLYNAVENGLTAEQQ---- 238
ETNFR+YAY+ IL F+K+E + NL +T++S +A+ G+TA Q
Sbjct: 360 ETNFRLYAYTDDADLLNILNQFAKLEEIVNGNLHCYRVTRDSFASAMRKGITAAQVLRFL 419
Query: 239 --NAHPRVADR 247
AHP + R
Sbjct: 420 SLRAHPSMLRR 430
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.320 0.134 0.391
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,552,439,911
Number of Sequences: 23463169
Number of extensions: 174121003
Number of successful extensions: 413006
Number of sequences better than 100.0: 390
Number of HSP's better than 100.0 without gapping: 373
Number of HSP's successfully gapped in prelim test: 17
Number of HSP's that attempted gapping in prelim test: 411526
Number of HSP's gapped (non-prelim): 595
length of query: 310
length of database: 8,064,228,071
effective HSP length: 142
effective length of query: 168
effective length of database: 9,027,425,369
effective search space: 1516607461992
effective search space used: 1516607461992
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 76 (33.9 bits)