BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 040211
(310 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2V7O|A Chain A, Crystal Structure Of Human Calcium-Calmodulin-Dependent
Protein Kinase Ii Gamma
Length = 336
Score = 32.7 bits (73), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 29/102 (28%), Positives = 50/102 (49%), Gaps = 17/102 (16%)
Query: 82 LTESGFQFLLMD--TNAQLW--YIVREYIS--NSQH--DSMLAYERGINQADLISFLLEL 133
++E GF +L+ D T +L+ + REY S ++ H +L I+Q D++
Sbjct: 99 ISEEGFHYLVFDLVTGGELFEDIVAREYYSEADASHCIHQILESVNHIHQHDIV------ 152
Query: 134 SFHVAGEAYNLKTLSEIQRSMIKDFADLGLVKLQQGRKESWF 175
H + NL S+ + + +K AD GL QG +++WF
Sbjct: 153 --HRDLKPENLLLASKCKGAAVK-LADFGLAIEVQGEQQAWF 191
>pdb|3BHH|A Chain A, Crystal Structure Of Human Calcium/calmodulin-dependent
Protein Kinase Iib Isoform 1 (camk2b)
pdb|3BHH|B Chain B, Crystal Structure Of Human Calcium/calmodulin-dependent
Protein Kinase Iib Isoform 1 (camk2b)
pdb|3BHH|C Chain C, Crystal Structure Of Human Calcium/calmodulin-dependent
Protein Kinase Iib Isoform 1 (camk2b)
pdb|3BHH|D Chain D, Crystal Structure Of Human Calcium/calmodulin-dependent
Protein Kinase Iib Isoform 1 (camk2b)
Length = 295
Score = 30.4 bits (67), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 29/106 (27%), Positives = 48/106 (45%), Gaps = 25/106 (23%)
Query: 82 LTESGFQFLLMD--TNAQLW--YIVREYISNSQHDSMLAYERGINQADLISFLLE--LSF 135
++E GF +L+ D T +L+ + REY S + + + I +LE L
Sbjct: 72 ISEEGFHYLVFDLVTGGELFEDIVAREYYSEA------------DASHCIQQILEAVLHC 119
Query: 136 HVAGEAY------NLKTLSEIQRSMIKDFADLGLVKLQQGRKESWF 175
H G + NL S+ + + +K AD GL QG +++WF
Sbjct: 120 HQMGVVHRDLKPENLLLASKCKGAAVK-LADFGLAIEVQGDQQAWF 164
>pdb|2WEL|A Chain A, Crystal Structure Of Su6656-Bound CalciumCALMODULIN-
Dependent Protein Kinase Ii Delta In Complex With
Calmodulin
Length = 327
Score = 29.3 bits (64), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 26/99 (26%), Positives = 45/99 (45%), Gaps = 11/99 (11%)
Query: 82 LTESGFQFLLMD--TNAQLW--YIVREYISNSQHDSMLA-YERGINQADLISFLLELSFH 136
++E GF +L+ D T +L+ + REY S + + +N L + H
Sbjct: 72 ISEEGFHYLVFDLVTGGELFEDIVAREYYSEADASHCIQQILESVNHCHLNGIV-----H 126
Query: 137 VAGEAYNLKTLSEIQRSMIKDFADLGLVKLQQGRKESWF 175
+ NL S+ + + +K AD GL QG +++WF
Sbjct: 127 RDLKPENLLLASKSKGAAVK-LADFGLAIEVQGDQQAWF 164
>pdb|2VN9|A Chain A, Crystal Structure Of Human Calcium Calmodulin Dependent
Protein Kinase Ii Delta Isoform 1, Camkd
pdb|2VN9|B Chain B, Crystal Structure Of Human Calcium Calmodulin Dependent
Protein Kinase Ii Delta Isoform 1, Camkd
Length = 301
Score = 29.3 bits (64), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 26/99 (26%), Positives = 45/99 (45%), Gaps = 11/99 (11%)
Query: 82 LTESGFQFLLMD--TNAQLW--YIVREYISNSQHDSMLA-YERGINQADLISFLLELSFH 136
++E GF +L+ D T +L+ + REY S + + +N L + H
Sbjct: 72 ISEEGFHYLVFDLVTGGELFEDIVAREYYSEADASHCIQQILESVNHCHLNGIV-----H 126
Query: 137 VAGEAYNLKTLSEIQRSMIKDFADLGLVKLQQGRKESWF 175
+ NL S+ + + +K AD GL QG +++WF
Sbjct: 127 RDLKPENLLLASKSKGAAVK-LADFGLAIEVQGDQQAWF 164
>pdb|3DGP|A Chain A, Crystal Structure Of The Complex Between Tfb5 And The
C-Terminal Domain Of Tfb2
Length = 80
Score = 28.9 bits (63), Expect = 3.6, Method: Composition-based stats.
Identities = 12/31 (38%), Positives = 19/31 (61%)
Query: 255 VCDQIRLWESDLNRVEMTPAHYYDEFPSRED 285
V DQIRLW+ +L+RV Y +F + ++
Sbjct: 4 VVDQIRLWQLELDRVITYEGSLYSDFETSQE 34
>pdb|3DOM|A Chain A, Crystal Structure Of The Complex Between Tfb5 And The
C-Terminal Domain Of Tfb2
pdb|3DOM|C Chain C, Crystal Structure Of The Complex Between Tfb5 And The
C-Terminal Domain Of Tfb2
Length = 108
Score = 28.9 bits (63), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 13/44 (29%), Positives = 23/44 (52%)
Query: 242 PRVADRIPSVLENVCDQIRLWESDLNRVEMTPAHYYDEFPSRED 285
P + + + V DQIRLW+ +L+RV Y +F + ++
Sbjct: 19 PNCKEPLQVLPPTVVDQIRLWQLELDRVITYEGSLYSDFETSQE 62
>pdb|3FCX|A Chain A, Crystal Structure Of Human Esterase D
pdb|3FCX|B Chain B, Crystal Structure Of Human Esterase D
Length = 282
Score = 28.5 bits (62), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 13/38 (34%), Positives = 20/38 (52%), Gaps = 8/38 (21%)
Query: 168 QGRKESW--------FIPTIADSLETNFRMYAYSTSKL 197
+G ESW ++ D +TN+RMY+Y T +L
Sbjct: 91 KGEDESWDFGTGAGFYVDATEDPWKTNYRMYSYVTEEL 128
>pdb|2D5W|A Chain A, The Crystal Structure Of Oligopeptide Binding Protein From
Thermus Thermophilus Hb8 Complexed With Pentapeptide
pdb|2D5W|B Chain B, The Crystal Structure Of Oligopeptide Binding Protein From
Thermus Thermophilus Hb8 Complexed With Pentapeptide
Length = 603
Score = 28.1 bits (61), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 28/109 (25%), Positives = 49/109 (44%), Gaps = 16/109 (14%)
Query: 163 LVKLQQGRKESWFIP-TIADSLETNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAIT 221
LV+ GR + WF+P I + ++ N +C++++ + + I+ A+
Sbjct: 285 LVRRAPGRFDIWFVPGAIWEHIDIN--------KFENCQVVKDLGLNDKRTRQAILHALN 336
Query: 222 KESLYNAVENGLTAEQQNAHPRVADRIPSVLENVCDQIRLWESDLNRVE 270
+E L A +GL Q AH +A P NV + +E DL + E
Sbjct: 337 REGLVKAFFDGL---QPVAHTWIAPVNPLFNPNV----KKYEFDLKKAE 378
>pdb|1QLB|A Chain A, Respiratory Complex Ii-Like Fumarate Reductase From
Wolinella Succinogenes
pdb|1QLB|D Chain D, Respiratory Complex Ii-Like Fumarate Reductase From
Wolinella Succinogenes
Length = 656
Score = 28.1 bits (61), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 38/67 (56%), Gaps = 8/67 (11%)
Query: 223 ESLYNAVEN-GLTAEQQNAHPRV--ADRIPSVLE-NVCDQIRLWESDLNRVEMTPAHYYD 278
E LY +N G+ ++ +A+P + A R+P +L+ +C + + L+R E AH +
Sbjct: 495 EELYKKSKNVGIKNKRLHANPELEEAYRVPMMLKVALC----VAKGALDRTESRGAHNRE 550
Query: 279 EFPSRED 285
++P R+D
Sbjct: 551 DYPKRDD 557
>pdb|1E7P|A Chain A, Quinol:fumarate Reductase From Wolinella Succinogenes
pdb|1E7P|D Chain D, Quinol:fumarate Reductase From Wolinella Succinogenes
pdb|2BS3|A Chain A, Glu C180-> Gln Variant Quinol:fumarate Reductase From
Wolinella Succinogenes
pdb|2BS3|D Chain D, Glu C180-> Gln Variant Quinol:fumarate Reductase From
Wolinella Succinogenes
pdb|2BS4|A Chain A, Glu C180-> Ile Variant Quinol:fumarate Reductase From
Wolinella Succinogenes
pdb|2BS4|D Chain D, Glu C180-> Ile Variant Quinol:fumarate Reductase From
Wolinella Succinogenes
pdb|1E7P|G Chain G, Quinol:fumarate Reductase From Wolinella Succinogenes
pdb|1E7P|J Chain J, Quinol:fumarate Reductase From Wolinella Succinogenes
Length = 656
Score = 28.1 bits (61), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 38/67 (56%), Gaps = 8/67 (11%)
Query: 223 ESLYNAVEN-GLTAEQQNAHPRV--ADRIPSVLE-NVCDQIRLWESDLNRVEMTPAHYYD 278
E LY +N G+ ++ +A+P + A R+P +L+ +C + + L+R E AH +
Sbjct: 495 EELYKKSKNVGIKNKRLHANPELEEAYRVPMMLKVALC----VAKGALDRTESRGAHNRE 550
Query: 279 EFPSRED 285
++P R+D
Sbjct: 551 DYPKRDD 557
>pdb|2BS2|A Chain A, Quinol:fumarate Reductase From Wolinella Succinogenes
pdb|2BS2|D Chain D, Quinol:fumarate Reductase From Wolinella Succinogenes
Length = 660
Score = 28.1 bits (61), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 38/67 (56%), Gaps = 8/67 (11%)
Query: 223 ESLYNAVEN-GLTAEQQNAHPRV--ADRIPSVLE-NVCDQIRLWESDLNRVEMTPAHYYD 278
E LY +N G+ ++ +A+P + A R+P +L+ +C + + L+R E AH +
Sbjct: 495 EELYKKSKNVGIKNKRLHANPELEEAYRVPMMLKVALC----VAKGALDRTESRGAHNRE 550
Query: 279 EFPSRED 285
++P R+D
Sbjct: 551 DYPKRDD 557
>pdb|3LWS|A Chain A, Crystal Structure Of Putative Aromatic Amino Acid Beta-
Eliminating LyaseTHREONINE ALDOLASE. (YP_001813866.1)
FROM Exiguobacterium Sp. 255-15 At 2.00 A Resolution
pdb|3LWS|B Chain B, Crystal Structure Of Putative Aromatic Amino Acid Beta-
Eliminating LyaseTHREONINE ALDOLASE. (YP_001813866.1)
FROM Exiguobacterium Sp. 255-15 At 2.00 A Resolution
pdb|3LWS|C Chain C, Crystal Structure Of Putative Aromatic Amino Acid Beta-
Eliminating LyaseTHREONINE ALDOLASE. (YP_001813866.1)
FROM Exiguobacterium Sp. 255-15 At 2.00 A Resolution
pdb|3LWS|D Chain D, Crystal Structure Of Putative Aromatic Amino Acid Beta-
Eliminating LyaseTHREONINE ALDOLASE. (YP_001813866.1)
FROM Exiguobacterium Sp. 255-15 At 2.00 A Resolution
pdb|3LWS|E Chain E, Crystal Structure Of Putative Aromatic Amino Acid Beta-
Eliminating LyaseTHREONINE ALDOLASE. (YP_001813866.1)
FROM Exiguobacterium Sp. 255-15 At 2.00 A Resolution
pdb|3LWS|F Chain F, Crystal Structure Of Putative Aromatic Amino Acid Beta-
Eliminating LyaseTHREONINE ALDOLASE. (YP_001813866.1)
FROM Exiguobacterium Sp. 255-15 At 2.00 A Resolution
Length = 357
Score = 27.3 bits (59), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 34/143 (23%), Positives = 55/143 (38%), Gaps = 13/143 (9%)
Query: 121 INQADLISFLLELSFHVAGEAYNLKTLSEIQRSMIKDFADLGLVKLQQGRKESWFIPTIA 180
I++ D + L + + G A L TL EI K D+ + L+ ++E +
Sbjct: 101 IHEQDGLKELHPIETILVGAADRLXTLDEI-----KALPDIACLLLELPQREIGGVAPAF 155
Query: 181 DSLETNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKESLYNAVENGLTAEQQNA 240
LET R +LH + RLF + Y A +S+Y + GL
Sbjct: 156 SELETISRYCRERGIRLHLDGARLFEXLPYYEKTAAEIAGLFDSIYISFYXGLGG----- 210
Query: 241 HPRVADRIPSVLENVCDQIRLWE 263
+A I + C R+W+
Sbjct: 211 ---IAGAILAGPAAFCQTARIWK 230
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.134 0.391
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,630,574
Number of Sequences: 62578
Number of extensions: 323422
Number of successful extensions: 747
Number of sequences better than 100.0: 14
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 744
Number of HSP's gapped (non-prelim): 14
length of query: 310
length of database: 14,973,337
effective HSP length: 99
effective length of query: 211
effective length of database: 8,778,115
effective search space: 1852182265
effective search space used: 1852182265
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (24.3 bits)