BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 040211
(310 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P60027|TF2H4_PANTR General transcription factor IIH subunit 4 OS=Pan troglodytes
GN=GTF2H4 PE=3 SV=1
Length = 462
Score = 149 bits (376), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 99/326 (30%), Positives = 168/326 (51%), Gaps = 56/326 (17%)
Query: 29 LEDLEAYAIGQWERFLLQLISSAQAERSINFCSSTMKVFQRGLLIQRDK-EAPRLTESGF 87
+ L+ YA +WE L ++ S A S + + Q GL+ + E P +T +GF
Sbjct: 145 VPSLDKYAEERWEVVLHFMVGSPSAAVSQDLAQ---LLSQAGLMKSTEPGEPPCITSAGF 201
Query: 88 QFLLMDTNAQLWYIVREYISNSQHDSMLAYERGINQADLISFLLELSFHVAGEAYNLKTL 147
QFLL+DT AQLWY + +Y+ +Q RG++ +++SFL +LSF G+ Y+++ +
Sbjct: 202 QFLLLDTPAQLWYFMLQYLQTAQ-------SRGMDLVEILSFLFQLSFSTLGKDYSVEGM 254
Query: 148 SEIQRSMIKDFADLGLVKLQQGRKESWFIPT-IADSL-------------------ETNF 187
S+ + ++ + GLV Q+ RK + PT +A +L ETN+
Sbjct: 255 SDSLLNFLQHLREFGLV-FQRKRKSRRYYPTRLAINLSSGVSGAGGTVHQPGFIVVETNY 313
Query: 188 RMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKESLYNAVENGLTAEQ------QNAH 241
R+YAY+ S+L ++ LFS++ Y+ PN++V +T+ES+ A+ +G+TA+Q AH
Sbjct: 314 RLYAYTESELQIALIALFSEMLYRFPNMVVAQVTRESVQQAIASGITAQQIIHFLRTRAH 373
Query: 242 PRVADRIPSVLENVCDQIRLWESDLNRVEMTPAHYYDEFPSR------------------ 283
P + + P + + DQIRLWE + +R+ T Y++F S+
Sbjct: 374 PVMLKQTPVLPPTITDQIRLWELERDRLRFTEGVLYNQFLSQVDFELLLAHARELGVLVF 433
Query: 284 EDSKKMRLVVNAEIHMHMREFLRGQN 309
E+S K +VV H ++ F + Q
Sbjct: 434 ENSAKRLMVVTPAGHSDVKRFWKRQK 459
>sp|Q92759|TF2H4_HUMAN General transcription factor IIH subunit 4 OS=Homo sapiens
GN=GTF2H4 PE=2 SV=1
Length = 462
Score = 149 bits (376), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 99/326 (30%), Positives = 168/326 (51%), Gaps = 56/326 (17%)
Query: 29 LEDLEAYAIGQWERFLLQLISSAQAERSINFCSSTMKVFQRGLLIQRDK-EAPRLTESGF 87
+ L+ YA +WE L ++ S A S + + Q GL+ + E P +T +GF
Sbjct: 145 VPSLDKYAEERWEVVLHFMVGSPSAAVSQDLAQ---LLSQAGLMKSTEPGEPPCITSAGF 201
Query: 88 QFLLMDTNAQLWYIVREYISNSQHDSMLAYERGINQADLISFLLELSFHVAGEAYNLKTL 147
QFLL+DT AQLWY + +Y+ +Q RG++ +++SFL +LSF G+ Y+++ +
Sbjct: 202 QFLLLDTPAQLWYFMLQYLQTAQ-------SRGMDLVEILSFLFQLSFSTLGKDYSVEGM 254
Query: 148 SEIQRSMIKDFADLGLVKLQQGRKESWFIPT-IADSL-------------------ETNF 187
S+ + ++ + GLV Q+ RK + PT +A +L ETN+
Sbjct: 255 SDSLLNFLQHLREFGLV-FQRKRKSRRYYPTRLAINLSSGVSGAGGTVHQPGFIVVETNY 313
Query: 188 RMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKESLYNAVENGLTAEQ------QNAH 241
R+YAY+ S+L ++ LFS++ Y+ PN++V +T+ES+ A+ +G+TA+Q AH
Sbjct: 314 RLYAYTESELQIALIALFSEMLYRFPNMVVAQVTRESVQQAIASGITAQQIIHFLRTRAH 373
Query: 242 PRVADRIPSVLENVCDQIRLWESDLNRVEMTPAHYYDEFPSR------------------ 283
P + + P + + DQIRLWE + +R+ T Y++F S+
Sbjct: 374 PVMLKQTPVLPPTITDQIRLWELERDRLRFTEGVLYNQFLSQVDFELLLAHARELGVLVF 433
Query: 284 EDSKKMRLVVNAEIHMHMREFLRGQN 309
E+S K +VV H ++ F + Q
Sbjct: 434 ENSAKRLMVVTPAGHSDVKRFWKRQK 459
>sp|O70422|TF2H4_MOUSE General transcription factor IIH subunit 4 OS=Mus musculus
GN=Gtf2h4 PE=2 SV=1
Length = 463
Score = 148 bits (373), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 99/326 (30%), Positives = 168/326 (51%), Gaps = 56/326 (17%)
Query: 29 LEDLEAYAIGQWERFLLQLISSAQAERSINFCSSTMKVFQRGLLIQRDK-EAPRLTESGF 87
+ L+ YA +WE L ++ S A S + + Q GL+ + E P +T +GF
Sbjct: 146 VPSLDKYAEERWEVVLHFMVGSPSAAVSQDLAQ---LLSQAGLMKSTEPGEPPCITSAGF 202
Query: 88 QFLLMDTNAQLWYIVREYISNSQHDSMLAYERGINQADLISFLLELSFHVAGEAYNLKTL 147
QFLL+DT AQLWY + +Y+ +Q RG++ +++SFL +LSF G+ Y+++ +
Sbjct: 203 QFLLLDTPAQLWYFMLQYLQTAQ-------SRGMDLVEILSFLFQLSFSTLGKDYSVEGM 255
Query: 148 SEIQRSMIKDFADLGLVKLQQGRKESWFIPT-IADSL-------------------ETNF 187
S+ + ++ + GLV Q+ RK + PT +A +L ETN+
Sbjct: 256 SDSLLNFLQHLREFGLV-FQRKRKSRRYYPTRLAINLSSGVSGAGGTVHQPGFIVVETNY 314
Query: 188 RMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKESLYNAVENGLTAEQ------QNAH 241
R+YAY+ S+L ++ LFS++ Y+ PN++V +T+ES+ A+ +G+TA+Q AH
Sbjct: 315 RLYAYTESELQIALIALFSEMLYRFPNMVVAQVTRESVQQAIASGITAQQIIHFLRTRAH 374
Query: 242 PRVADRIPSVLENVCDQIRLWESDLNRVEMTPAHYYDEFPSR------------------ 283
P + + P + + DQIRLWE + +R+ T Y++F S+
Sbjct: 375 PVMLKQNPVLPPTITDQIRLWELERDRLRFTEGVLYNQFLSQVDFELLLAHARELGVLVF 434
Query: 284 EDSKKMRLVVNAEIHMHMREFLRGQN 309
E+S K +VV H ++ F + Q
Sbjct: 435 ENSAKRLMVVTPAGHSDVKRFWKRQK 460
>sp|P87303|TFB2_SCHPO RNA polymerase II transcription factor B subunit 2
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=tfb2 PE=1 SV=2
Length = 447
Score = 137 bits (346), Expect = 8e-32, Method: Compositional matrix adjust.
Identities = 85/284 (29%), Positives = 146/284 (51%), Gaps = 39/284 (13%)
Query: 26 LPTLEDLEAYAIGQWERFLLQLISSAQAERSINFCSSTMKVFQRGLLIQRDKEAPRLTES 85
L T++ L+AYA WE L ++ + +A+ + + +RG L+ K R+T +
Sbjct: 125 LVTVDFLDAYAKETWETILHFMVGTPEAKFP---GEGVLSLLKRGGLMSGPKNQLRITRA 181
Query: 86 GFQFLLMDTNAQLWYIVREYISNSQHDSMLAYERGINQADLISFLLELSFHVAGEAYNLK 145
GFQFLL D NAQ+W ++ +Y+ S+ M + ++ FL L G AY++
Sbjct: 182 GFQFLLQDINAQIWTLLLDYLKLSEDTHM-------DPVQVLHFLFMLGSLDLGRAYSVD 234
Query: 146 TLSEIQRSMIKDFADLGLVKLQQGRKESWFIPTIADSL---------------------- 183
L++ Q+ M++D + GLV ++ + ++ +A L
Sbjct: 235 FLTDTQQIMLEDLREYGLVYQRKITSKRFYPTRLATGLTTDYRSLHGKQSENDDDKGFII 294
Query: 184 -ETNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKESLYNAVENGLTAEQ----- 237
ETN+R+YAY++S L I+ LF+ + + NL+VG IT++S+ A+ NG+ AEQ
Sbjct: 295 VETNYRLYAYTSSPLQIAIIGLFANLRARFSNLVVGVITRDSIRRALMNGIAAEQIITYL 354
Query: 238 -QNAHPRVADRIPSVLENVCDQIRLWESDLNRVEMTPAHYYDEF 280
+AHP++ +P + + DQI LWE + NR+ TP + +F
Sbjct: 355 TTHAHPQMRSNVPLLPPTLVDQIYLWELEKNRLRATPGILFRDF 398
>sp|Q6BZX4|TFB2_YARLI RNA polymerase II transcription factor B subunit 2 OS=Yarrowia
lipolytica (strain CLIB 122 / E 150) GN=TFB2 PE=3 SV=1
Length = 467
Score = 135 bits (341), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 86/300 (28%), Positives = 150/300 (50%), Gaps = 53/300 (17%)
Query: 32 LEAYAIGQWERFLLQLISSAQAERSINFCSSTMKVFQRGLLIQRDKEAPRLTESGFQFLL 91
L+A+A+ QWE L ++ ++ + + + L++ ++ R+T +GFQFLL
Sbjct: 133 LDAHAVSQWEMILHFMVGTSIGRTP---SDGVLNLLKHSGLMEPERGGLRITNAGFQFLL 189
Query: 92 MDTNAQLWYIVREYISNSQHDSMLAYERGINQADLISFLLELSFHVAGEAYNLKTLSEIQ 151
D NAQ+W ++ +Y++ S++ M + D+++F+ L G+ Y+L LSE Q
Sbjct: 190 QDVNAQIWTLLLQYLNMSEYLQM-------DPVDVLNFIFMLGSLELGQDYSLSALSETQ 242
Query: 152 RSMIKDFADLGLVKLQQGRKESWFIPT--------------------------------I 179
+ M++D D G+V Q+ F PT
Sbjct: 243 KHMLEDLRDYGIV-YQRKASSRRFYPTRLATTLTSETAALRTASQSMEAATQDTISSSVA 301
Query: 180 ADS----LETNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKESLYNAVENGLTA 235
ADS LETNFR+YAY+ S L +L LF ++ + N++ G I ++S+ A+ NG+TA
Sbjct: 302 ADSGFIILETNFRLYAYTESPLQIAVLNLFVNLKTRFANMVTGQINRDSVRFALSNGITA 361
Query: 236 EQ------QNAHPRVADRIPSVLENVCDQIRLWESDLNRVEMTPAHYYDEFPSREDSKKM 289
EQ +AHPR+ + V DQI+LW+ +++R+ T + + EF + ++ K +
Sbjct: 362 EQIITYLSVHAHPRMKGMEHVLPPTVVDQIKLWQLEMDRIRATDGYLFSEFKNFDEYKDV 421
>sp|Q54C29|TF2H4_DICDI General transcription factor IIH subunit 4 OS=Dictyostelium
discoideum GN=gtf2h4 PE=3 SV=1
Length = 483
Score = 121 bits (303), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 88/300 (29%), Positives = 148/300 (49%), Gaps = 58/300 (19%)
Query: 27 PTLEDLEAYAIGQWERFLLQLISSAQAERSINFCSSTMKVFQRGLLIQRDKEAPRLTESG 86
P+++DL++Y+ QWE+ L L ++ ++ ++ L +++ + +T G
Sbjct: 156 PSIDDLDSYSKSQWEKVLYFL-----SDDTVQPSKLISELLLSSNLTKQEGDGLSITSEG 210
Query: 87 FQFLLMDTNAQLWYIVREYISNSQHDSMLAYERGINQA---DLISFLLELSFHVAGEAYN 143
F+FLL D Q+W ++ Y+ + L ++G DL+SFL LSF G Y
Sbjct: 211 FKFLLKDVYTQIWTLLIVYLDD------LEKKKGKGSGSRNDLLSFLFRLSFLNLGRGYL 264
Query: 144 LKTLSEIQRSMIKDFADLGLVKLQ---------------------------------QGR 170
+ LSE Q+ + GL+ ++ Q +
Sbjct: 265 VSELSEQQKEYLFALKQFGLIYMRTDSSILFYPTRLIISLTTGKTLSLIQSISSERTQTQ 324
Query: 171 KESWFIPTIADSLETNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKESLYNAVE 230
KE +I LETN+R+YAY++S L +L LF K+ Y+LPNL VG IT+ES+ A+
Sbjct: 325 KEQGYI-----VLETNYRLYAYTSSSLQISLLSLFVKMLYRLPNLAVGIITRESIRTALI 379
Query: 231 NGLTAEQ------QNAHPRVADRIPSVLENVCDQIRLWESDLNRVEMTPAHYYDEFPSRE 284
+G+TA+Q N+HP A+ + + V +QI LWE++ NR+ T + Y+ FP+ +
Sbjct: 380 HGITADQIIDFVRHNSHPNAANSGQPIPDVVAEQILLWEAERNRITYTKSVLYNSFPTND 439
>sp|Q6BGW8|TFB2_DEBHA RNA polymerase II transcription factor B subunit 2 OS=Debaryomyces
hansenii (strain ATCC 36239 / CBS 767 / JCM 1990 / NBRC
0083 / IGC 2968) GN=TFB2 PE=3 SV=2
Length = 515
Score = 114 bits (285), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 91/346 (26%), Positives = 158/346 (45%), Gaps = 103/346 (29%)
Query: 32 LEAYAIGQWERFLLQLISSAQAERSINFCSSTMKVFQRGLLIQ-RDKEAPRL--TESGFQ 88
L+++A+ +WE L ++ + E S+ +S + + + G L++ +K RL T SGFQ
Sbjct: 137 LDSFALQKWESILHFMVGT---ELSVTPSNSVLSLLKSGGLMEGTNKGGNRLNITNSGFQ 193
Query: 89 FLLMDTNAQLWYIVREYISNSQHDSMLAYERGINQADLISFLLELSFHVAGEAYNLKTLS 148
FLL D NAQ+W ++ +Y++ +Q +M + D+++F+ L G+ Y + +LS
Sbjct: 194 FLLQDINAQIWTLLLQYLNLTQDLNM-------DPVDVLNFIFILGSLELGKGYTVSSLS 246
Query: 149 EIQRSMIKDFADLGLVKLQQGRKESWFIPT------IADS-------------------- 182
E Q SM+ D D GL+ Q+ F PT +DS
Sbjct: 247 ETQISMLADLRDYGLI-YQRSENSERFYPTRLATTLTSDSAALKSPSMAMEQALESTTET 305
Query: 183 ----------------LETNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKESLY 226
LETNF++YAY+ S L IL LF ++ + N++ G IT+ES+
Sbjct: 306 EEQQNLASNSNQGTIILETNFKIYAYTNSPLEIAILNLFVHLKTRFSNMVCGQITRESIR 365
Query: 227 NAVENGLTAEQ------QNAHPRV----ADRIPSVLE----------------------- 253
NA+ NG+TA+Q +AH ++ +R+ +E
Sbjct: 366 NALYNGITADQIIKFLETHAHSQMKILAKERLDKKIEFDTSNNINTAGGAPQSQMMTNEN 425
Query: 254 --------------NVCDQIRLWESDLNRVEMTPAHYYDEFPSRED 285
V DQI+LW+ +L+R++ + + +F S+++
Sbjct: 426 GTTVAQHKLEVLPPTVVDQIKLWQLELDRIQTFEGYLFKDFASQQE 471
>sp|Q6CLR2|TFB2_KLULA RNA polymerase II transcription factor B subunit 2 OS=Kluyveromyces
lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC
1267 / NRRL Y-1140 / WM37) GN=TFB2 PE=3 SV=1
Length = 496
Score = 113 bits (282), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 86/326 (26%), Positives = 145/326 (44%), Gaps = 82/326 (25%)
Query: 32 LEAYAIGQWERFLLQLISSAQAERSINFCSSTMKVFQR-GLLIQRDKEAPRLTESGFQFL 90
L+ Y+ +WE L ++ + + + Q GL+ + + ++T GFQFL
Sbjct: 137 LDQYSAEKWETILHYMVGTPNTNTP---GGKVLDLLQHSGLMEEAEYGELKITNQGFQFL 193
Query: 91 LMDTNAQLWYIVREYISNSQHDSMLAYERGINQADLISFLLELSFHVAGEAYNLKTLSEI 150
L D NAQ+W ++ +Y+ +A ++ D+++F+ L G+AY LS
Sbjct: 194 LQDVNAQMWTLLLQYLK-------MAESLQMDPVDVLNFIFMLGALQLGKAYKCDQLSNT 246
Query: 151 QRSMIKDFADLGLVKLQQGRKESWFIPTIA------------------------------ 180
QR+M++D D GL+ Q ++ +A
Sbjct: 247 QRTMLQDMRDYGLIYQNQSDYAKFYPTRLATLLTSDTKAFRSASVALDSVLNKANETTAV 306
Query: 181 --DS---------------LETNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKE 223
DS +ETNF++Y+YS S L IL LF ++ + N++ G +T+E
Sbjct: 307 EGDSGQDETTERTQDGALIIETNFKLYSYSNSPLQIAILSLFVHLKSRFANMVTGQLTRE 366
Query: 224 SLYNAVENGLTAEQ------QNAHPRV-----------ADRIPSVLE-------NVCDQI 259
S+ NA+ NG+TAEQ +AHPR+ + P+V E V DQI
Sbjct: 367 SVRNALLNGITAEQIIAYLETHAHPRMRRLAEENLSKKLELDPTVKETLQVLPPTVVDQI 426
Query: 260 RLWESDLNRVEMTPAHYYDEFPSRED 285
RLW+ +L+R+ + Y +F S ++
Sbjct: 427 RLWQLELDRIISYDGYLYTDFESYQE 452
>sp|Q6FP41|TFB2_CANGA RNA polymerase II transcription factor B subunit 2 OS=Candida
glabrata (strain ATCC 2001 / CBS 138 / JCM 3761 / NBRC
0622 / NRRL Y-65) GN=TFB2 PE=3 SV=1
Length = 504
Score = 101 bits (252), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 83/330 (25%), Positives = 141/330 (42%), Gaps = 87/330 (26%)
Query: 32 LEAYAIGQWERFLLQLISSAQAERSINFCSSTMKVFQRGLLIQR--DKEAPRLTESGFQF 89
L+ YA +WE L ++ + A+ + + + + L++ D +T GFQF
Sbjct: 139 LDEYAATKWETILHFMVGTPMAKMP---SENVLNLLKHSKLMEEVPDSSEFMITNEGFQF 195
Query: 90 LLMDTNAQLWYIVREYISNSQHDSMLAYERGINQADLISFLLELSFHVAGEAYNLKTLSE 149
LL + N+Q+W ++ +Y+ LA ++ +++F+ L G+AY+ + LSE
Sbjct: 196 LLQEVNSQIWSLLLQYLK-------LAESLHMDPVHVLNFIFMLGALETGKAYSTENLSE 248
Query: 150 IQRSMIKDFADLGLVKLQQGRKESWFIPT------------------------------- 178
Q M+ D D GLV Q+ + F PT
Sbjct: 249 TQLKMLLDMRDYGLV-FQKTSNPNIFYPTRLAQMLTSDTKSMRTASGAMESVLNKPDDAA 307
Query: 179 ----------------IADS---LETNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVGA 219
I D +ETNF++Y+Y S L IL LF ++ + N++ G
Sbjct: 308 KSTDDKYDSLEGKAEDIQDGALIIETNFKLYSYCNSPLQIAILSLFVHLKSRFANMVAGQ 367
Query: 220 ITKESLYNAVENGLTAEQ------QNAHPRV------------------ADRIPSVLENV 255
IT+ES+ A+ NG+TA+Q +AHP++ D + + V
Sbjct: 368 ITRESIRRALINGITADQVIAYLESHAHPQMRRLAEEKLQKKLELDPNCKDPLQVLPPTV 427
Query: 256 CDQIRLWESDLNRVEMTPAHYYDEFPSRED 285
DQI+LW+ +L+RV Y +F + +D
Sbjct: 428 VDQIKLWQLELDRVLTYEGSLYIDFDTAQD 457
>sp|Q02939|TFB2_YEAST RNA polymerase II transcription factor B subunit 2 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=TFB2 PE=1
SV=1
Length = 513
Score = 71.6 bits (174), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 45/134 (33%), Positives = 73/134 (54%), Gaps = 24/134 (17%)
Query: 176 IPTIADSLETNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKESLYNAVENGLTA 235
IP + +ETNF++Y+YS S L +L LF ++ + N+++G IT+ES+ A+ NG+TA
Sbjct: 334 IPDGSLIVETNFKIYSYSNSPLQIAVLSLFVHLKARFVNMVLGQITRESIRRALTNGITA 393
Query: 236 EQ------QNAHP---RVADRI--------PSVLE-------NVCDQIRLWESDLNRVEM 271
+Q +AHP R+A+ P+ E V DQIRLW+ +L+RV
Sbjct: 394 DQIIAYLETHAHPQMRRLAEEKLEKKLELDPNCKEPLQVLPPTVVDQIRLWQLELDRVIT 453
Query: 272 TPAHYYDEFPSRED 285
Y +F + ++
Sbjct: 454 YEGSLYSDFETSQE 467
Score = 65.9 bits (159), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 43/153 (28%), Positives = 76/153 (49%), Gaps = 13/153 (8%)
Query: 28 TLEDLEAYAIGQWERFLLQLISSAQAERSINFCSSTMKVFQRGLLIQRDKEAP--RLTES 85
+L+ L+ Y+ +WE L ++ + A+ + + + L++ ++T
Sbjct: 131 SLDLLDEYSANKWETILHFMVGTPLAKIP---SEKVLNLLKHSKLMEEVNSTGEFKITNE 187
Query: 86 GFQFLLMDTNAQLWYIVREYISNSQHDSMLAYERGINQADLISFLLELSFHVAGEAYNLK 145
GFQFLL + N+QLW ++ +Y+ + M + D++ F+ L G+AY +
Sbjct: 188 GFQFLLQEINSQLWTLLLQYLKMIETSKM-------DLVDVLHFIFMLGALEVGKAYKID 240
Query: 146 TLSEIQRSMIKDFADLGLVKLQQGRKESWFIPT 178
LSE QR M++D D GLV Q+ +S F PT
Sbjct: 241 ALSETQRIMLQDMRDYGLV-FQKHSNDSIFYPT 272
>sp|Q75B51|TFB2_ASHGO RNA polymerase II transcription factor B subunit 2 OS=Ashbya
gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 /
NRRL Y-1056) GN=TFB2 PE=3 SV=1
Length = 514
Score = 71.2 bits (173), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 51/169 (30%), Positives = 81/169 (47%), Gaps = 47/169 (27%)
Query: 183 LETNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKESLYNAVENGLTAEQ----- 237
+ETNF++Y+YS S L IL LF ++ + N++ G IT+ES+ A+ NG+TA+Q
Sbjct: 343 VETNFKLYSYSNSPLQIAILSLFIHLKTRFQNMVTGQITRESIRRALHNGITADQIIAYM 402
Query: 238 -QNAHPRV----ADRIPSVLE--------------NVCDQIRLWESDLNRVEMTPAHYYD 278
+AHP++ D + LE V DQI+LW+ +L+R+ + +
Sbjct: 403 ETHAHPQMRRLAGDNLEKKLELDPNCRDTLQVLPPTVVDQIKLWQLELDRIISYDGYLFR 462
Query: 279 EFPS-------------------REDSKKMRLVV---NAE-IHMHMREF 304
+F + +D KKM V NA+ I H R+F
Sbjct: 463 DFDNLQEYQVLAQYARDIGVLLWSDDKKKMFFVSKEGNAQVIDFHKRKF 511
Score = 67.8 bits (164), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 47/178 (26%), Positives = 92/178 (51%), Gaps = 13/178 (7%)
Query: 28 TLEDLEAYAIGQWERFLLQLISSAQAERSINFCSSTMKVFQRGLLIQRDKEAP--RLTES 85
T+ L++YA +WE L ++ + + + + + + L++ D+ + ++T
Sbjct: 142 TMAMLDSYAADKWETILHFMVGTPLTKSP---GKNVLSLLRHSKLMEVDESSKELKITNE 198
Query: 86 GFQFLLMDTNAQLWYIVREYISNSQHDSMLAYERGINQADLISFLLELSFHVAGEAYNLK 145
GFQFLL D NAQ+W ++ +Y++ ++ M + D+++ + + G+AY++
Sbjct: 199 GFQFLLQDANAQIWTLLLQYLTMAETFQM-------DPVDVLNLIFMIGALELGKAYSVV 251
Query: 146 TLSEIQRSMIKDFADLGLVKLQQGRKESWFIPTIADSLETNFRMYAYSTSKLHCEILR 203
LSE Q++M++D D GLV Q+ S F PT ++ T+ + S S +LR
Sbjct: 252 GLSETQKTMLQDLRDYGLV-FQKQSNLSKFYPTRLATMLTSDVVSIRSASGAVNSVLR 308
>sp|Q04GY8|ADDB_OENOB ATP-dependent helicase/deoxyribonuclease subunit B OS=Oenococcus
oeni (strain ATCC BAA-331 / PSU-1) GN=rexB PE=3 SV=1
Length = 1161
Score = 34.3 bits (77), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 27/96 (28%), Positives = 46/96 (47%), Gaps = 14/96 (14%)
Query: 188 RMYAYSTSKLHCEILRLFSK---IEYQLPNLIVGAITKESLYNAVENGLTAEQQNAHPRV 244
R+ YS S+L + + + I Q +++VG + +E L E+ N R
Sbjct: 70 RLQVYSLSRLAWALTKERDQKTIISNQSVSILVGQVLRE---------LPIEKLNIFARS 120
Query: 245 ADRIPSVLENVCDQI-RLWESDLNRVEMTPAHYYDE 279
A R+P + NV +Q+ +W S L E+ P H +D+
Sbjct: 121 A-RMPGFVANVAEQLLEIWRSGLTASEILPLHQFDD 155
>sp|A9BHA8|EFG_PETMO Elongation factor G OS=Petrotoga mobilis (strain DSM 10674 / SJ95)
GN=fusA PE=3 SV=1
Length = 695
Score = 33.9 bits (76), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 30/95 (31%), Positives = 46/95 (48%), Gaps = 11/95 (11%)
Query: 164 VKLQQGR---KESWFIPTIADSL---ETNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIV 217
VK+ Q R KE+ +P+ A+ +T R Y KL E L L S+ E++ + IV
Sbjct: 474 VKVGQPRVAYKETIKLPSEAEGKYIRQTGGRG-QYGHVKLRVEPLPLNSEKEFEFVDKIV 532
Query: 218 GAITKESLYNAVENGLTAEQQN----AHPRVADRI 248
G + A+ENG+ Q+ +P VA R+
Sbjct: 533 GGVIPREYIPAIENGVKESMQDGVLLGYPMVAIRV 567
>sp|Q13555|KCC2G_HUMAN Calcium/calmodulin-dependent protein kinase type II subunit gamma
OS=Homo sapiens GN=CAMK2G PE=1 SV=3
Length = 558
Score = 33.1 bits (74), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 29/102 (28%), Positives = 50/102 (49%), Gaps = 17/102 (16%)
Query: 82 LTESGFQFLLMD--TNAQLW--YIVREYIS--NSQH--DSMLAYERGINQADLISFLLEL 133
++E GF +L+ D T +L+ + REY S ++ H +L I+Q D++
Sbjct: 80 ISEEGFHYLVFDLVTGGELFEDIVAREYYSEADASHCIHQILESVNHIHQHDIV------ 133
Query: 134 SFHVAGEAYNLKTLSEIQRSMIKDFADLGLVKLQQGRKESWF 175
H + NL S+ + + +K AD GL QG +++WF
Sbjct: 134 --HRDLKPENLLLASKCKGAAVK-LADFGLAIEVQGEQQAWF 172
>sp|Q923T9|KCC2G_MOUSE Calcium/calmodulin-dependent protein kinase type II subunit gamma
OS=Mus musculus GN=Camk2g PE=1 SV=1
Length = 529
Score = 33.1 bits (74), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 29/102 (28%), Positives = 50/102 (49%), Gaps = 17/102 (16%)
Query: 82 LTESGFQFLLMD--TNAQLW--YIVREYIS--NSQH--DSMLAYERGINQADLISFLLEL 133
++E GF +L+ D T +L+ + REY S ++ H +L I+Q D++
Sbjct: 80 ISEEGFHYLVFDLVTGGELFEDIVAREYYSEADASHCIHQILESVNHIHQHDIV------ 133
Query: 134 SFHVAGEAYNLKTLSEIQRSMIKDFADLGLVKLQQGRKESWF 175
H + NL S+ + + +K AD GL QG +++WF
Sbjct: 134 --HRDLKPENLLLASKCKGAAVK-LADFGLAIEVQGEQQAWF 172
>sp|P11730|KCC2G_RAT Calcium/calmodulin-dependent protein kinase type II subunit gamma
OS=Rattus norvegicus GN=Camk2g PE=2 SV=1
Length = 527
Score = 32.7 bits (73), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 29/102 (28%), Positives = 50/102 (49%), Gaps = 17/102 (16%)
Query: 82 LTESGFQFLLMD--TNAQLW--YIVREYIS--NSQH--DSMLAYERGINQADLISFLLEL 133
++E GF +L+ D T +L+ + REY S ++ H +L I+Q D++
Sbjct: 80 ISEEGFHYLVFDLVTGGELFEDIVAREYYSEADASHCIHQILESVNHIHQHDIV------ 133
Query: 134 SFHVAGEAYNLKTLSEIQRSMIKDFADLGLVKLQQGRKESWF 175
H + NL S+ + + +K AD GL QG +++WF
Sbjct: 134 --HRDLKPENLLLASKCKGAAVK-LADFGLAIEVQGEQQAWF 172
>sp|Q9FJC1|FBD31_ARATH Putative FBD-associated F-box protein At5g53635 OS=Arabidopsis
thaliana GN=At5g53635 PE=4 SV=1
Length = 426
Score = 31.6 bits (70), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 30/105 (28%), Positives = 47/105 (44%), Gaps = 10/105 (9%)
Query: 13 LPREPMPSGITARLPTLEDLEAYAIGQWERFLLQLISSAQAERSINFCSSTMKVFQRGLL 72
P E + P LE+L+ Y G L+L+S + + SIN S M F ++
Sbjct: 160 FPNEANLERFVSCCPVLEELKIYGCGNENAITLRLLSRSLKKLSINILKS-MCDFHSEVV 218
Query: 73 IQRDKEAPRLTESGFQFLLMDTNAQLWYIVREYISNSQHDSMLAY 117
I +AP L+ +L ++ N YIV SN++ D L +
Sbjct: 219 I----DAPLLS-----YLKINDNVSERYIVNNLESNAKLDISLPF 254
>sp|Q54EK2|ABCC7_DICDI ABC transporter C family member 7 OS=Dictyostelium discoideum
GN=abcC7 PE=3 SV=1
Length = 1328
Score = 31.6 bits (70), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 32/57 (56%), Gaps = 7/57 (12%)
Query: 144 LKTLSEIQRSMIKDFADL-----GLVKLQQGRKESWFIPTIADSLETNFRMYAYSTS 195
LK L I RS I F+ L GL+ ++ R++S FI + DS+ N R++ Y+ S
Sbjct: 929 LKRLENISRSPI--FSILSESFNGLITIRSFRQQSRFIKRMQDSINVNLRLFYYNFS 983
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.320 0.134 0.391
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 107,551,389
Number of Sequences: 539616
Number of extensions: 4127692
Number of successful extensions: 10162
Number of sequences better than 100.0: 33
Number of HSP's better than 100.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 22
Number of HSP's that attempted gapping in prelim test: 10102
Number of HSP's gapped (non-prelim): 44
length of query: 310
length of database: 191,569,459
effective HSP length: 117
effective length of query: 193
effective length of database: 128,434,387
effective search space: 24787836691
effective search space used: 24787836691
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 61 (28.1 bits)