Query 040211
Match_columns 310
No_of_seqs 120 out of 192
Neff 5.0
Searched_HMMs 29240
Date Mon Mar 25 09:33:14 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040211.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/040211hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3dom_A RNA polymerase II trans 99.9 8.2E-27 2.8E-31 191.0 3.3 70 241-310 18-105 (108)
2 3dgp_A RNA polymerase II trans 99.9 2.1E-24 7.3E-29 168.6 3.0 58 253-310 2-77 (80)
3 1r7j_A Conserved hypothetical 35.1 9.2 0.00032 29.4 0.3 30 61-90 38-67 (95)
4 2fxa_A Protease production reg 31.6 43 0.0015 28.5 4.1 77 84-168 15-96 (207)
5 2v79_A DNA replication protein 31.2 62 0.0021 26.3 4.8 50 118-167 27-84 (135)
6 2hgc_A YJCQ protein; SR346, st 29.4 14 0.00048 29.5 0.6 45 37-91 30-74 (102)
7 1p6r_A Penicillinase repressor 29.2 51 0.0018 23.5 3.6 31 149-179 42-72 (82)
8 2htj_A P fimbrial regulatory p 29.0 37 0.0013 24.5 2.8 19 149-167 29-47 (81)
9 2jsc_A Transcriptional regulat 28.0 54 0.0019 25.4 3.8 27 149-175 49-75 (118)
10 3e19_A FEOA; transcriptional r 27.9 16 0.00055 26.5 0.6 33 131-164 5-37 (77)
11 2k4b_A Transcriptional regulat 27.8 51 0.0017 25.5 3.5 30 149-178 68-97 (99)
12 3u5c_T 40S ribosomal protein S 27.1 23 0.0008 30.0 1.5 33 58-90 99-132 (144)
13 1p4x_A Staphylococcal accessor 24.7 84 0.0029 28.0 4.9 103 62-168 69-208 (250)
14 1wj5_A Hypothetical protein (r 23.2 47 0.0016 27.3 2.6 27 152-179 81-108 (120)
15 1xn7_A Hypothetical protein YH 22.8 52 0.0018 24.5 2.6 26 140-167 24-49 (78)
16 1qgp_A Protein (double strande 22.6 76 0.0026 23.2 3.5 50 125-176 18-73 (77)
17 3cuo_A Uncharacterized HTH-typ 22.4 1E+02 0.0035 22.1 4.2 21 149-169 53-73 (99)
18 2d4z_A Chloride channel protei 22.2 67 0.0023 28.6 3.7 35 200-234 210-249 (250)
19 3jth_A Transcription activator 22.2 1E+02 0.0034 22.5 4.2 27 149-175 51-77 (98)
20 3lab_A Putative KDPG (2-keto-3 22.1 66 0.0022 28.7 3.6 116 183-307 42-179 (217)
21 1u2w_A CADC repressor, cadmium 22.0 48 0.0016 25.8 2.4 27 149-175 71-97 (122)
22 3mhx_A Putative ferrous iron t 21.5 12 0.0004 28.0 -1.3 33 132-164 3-37 (85)
23 1q1h_A TFE, transcription fact 21.4 70 0.0024 24.0 3.2 44 122-167 19-66 (110)
24 4e38_A Keto-hydroxyglutarate-a 20.9 74 0.0025 28.5 3.7 144 153-306 26-193 (232)
25 2k5l_A FEOA; structure, NESG, 20.6 16 0.00053 27.1 -0.7 32 132-164 3-34 (81)
No 1
>3dom_A RNA polymerase II transcription factor B subunit; protein-protein complex, heterodimer, beta-alpha-beta split, strand addition; 2.60A {Saccharomyces cerevisiae}
Probab=99.92 E-value=8.2e-27 Score=191.05 Aligned_cols=70 Identities=27% Similarity=0.523 Sum_probs=53.9
Q ss_pred ChhhhhcCCCCChhHHHHHHHHHHhcCceeecCcEEeccCCCC------------------ccccccEEEEecccchHHH
Q 040211 241 HPRVADRIPSVLENVCDQIRLWESDLNRVEMTPAHYYDEFPSR------------------EDSKKMRLVVNAEIHMHMR 302 (310)
Q Consensus 241 Hp~m~~~~p~iP~tV~DQIrLWE~Er~Rl~~~~g~ly~~f~s~------------------~~~~kr~~~V~~~~h~~vr 302 (310)
.|+++...|+|||||+|||||||+|||||++++||||++|+|+ +|+.+|+|||+.+||++||
T Consensus 18 ~~~~~~~~p~lPpTVvDQIrLWE~ErnRl~~~~G~LY~dF~s~~efe~v~~yA~e~gvLlW~d~~kr~~~Vs~egh~~vk 97 (108)
T 3dom_A 18 DPNCKEPLQVLPPTVVDQIRLWQLELDRVITYEGSLYSDFETSQEYNLLSKYAQDIGVLLWKDDKKKKFFISKEGNSQVL 97 (108)
T ss_dssp --------------CCCHHHHHHHHHTTCEEEEEEEEECCSCHHHHHHHHHHHHHHTCEEEEEGGGTEEEEEGGGHHHHH
T ss_pred CcccccCCCCCCCcHHHHHHHHHHhhCceeccceEEEecCCCHHHHHHHHHHHHHcCeEEEecCCccEEEEeccchHHHH
Confidence 4555556899999999999999999999999999999999998 8999999999999999999
Q ss_pred HHHHhccC
Q 040211 303 EFLRGQNK 310 (310)
Q Consensus 303 ~f~k~~~~ 310 (310)
+|||++++
T Consensus 98 ~f~Kr~~~ 105 (108)
T 3dom_A 98 DFAKRKLK 105 (108)
T ss_dssp HHHHHHC-
T ss_pred HHHHHHHh
Confidence 99999874
No 2
>3dgp_A RNA polymerase II transcription factor B subunit; protein-protein complex, beta-alpha-beta spilt, heterodimer, damage, DNA excision; 1.80A {Saccharomyces cerevisiae}
Probab=99.89 E-value=2.1e-24 Score=168.59 Aligned_cols=58 Identities=31% Similarity=0.569 Sum_probs=43.2
Q ss_pred hhHHHHHHHHHHhcCceeecCcEEeccCCCC------------------ccccccEEEEecccchHHHHHHHhccC
Q 040211 253 ENVCDQIRLWESDLNRVEMTPAHYYDEFPSR------------------EDSKKMRLVVNAEIHMHMREFLRGQNK 310 (310)
Q Consensus 253 ~tV~DQIrLWE~Er~Rl~~~~g~ly~~f~s~------------------~~~~kr~~~V~~~~h~~vr~f~k~~~~ 310 (310)
|||+|||||||+|||||++++||||++|+|+ +|+.+|+|||+.+||++||+|||++++
T Consensus 2 pTV~DQIrLWe~ErnRl~~~~g~Ly~~F~s~~efe~~~~yA~e~gvLlW~~~~kr~~~V~~~gh~~vk~f~k~~~~ 77 (80)
T 3dgp_A 2 PTVVDQIRLWQLELDRVITYEGSLYSDFETSQEYNLLSKYAQDIGVLLWKDDKKKKFFISKEGNSQVLDFAKRKLK 77 (80)
T ss_dssp ------------CGGGCEEEEEEEEECCSCHHHHHHHHHHHHHTTCEEEEETTTTEEEEEGGGHHHHHHHHTTC--
T ss_pred CchHHHHHHHHHhhCceeccceEEEecCCCHHHHHHHHHHHHHcCeEEEecCCccEEEEeccchHHHHHHHHHHHh
Confidence 8999999999999999999999999999998 899999999999999999999999874
No 3
>1r7j_A Conserved hypothetical protein SSO10A; winged helix-turn-helix, two-stranded antiparallel coiled CO structural genomics, PSI; 1.47A {Sulfolobus solfataricus} SCOP: a.4.5.49 PDB: 1xsx_A
Probab=35.05 E-value=9.2 Score=29.37 Aligned_cols=30 Identities=20% Similarity=0.278 Sum_probs=25.2
Q ss_pred hhHHHHHHhCCCcccCCCCCccccccchhc
Q 040211 61 SSTMKVFQRGLLIQRDKEAPRLTESGFQFL 90 (310)
Q Consensus 61 ~~v~~lL~~~~L~~~~~~~~~IT~~GFqFL 90 (310)
...++.|...||++...+...||++|-++|
T Consensus 38 ~~~l~~L~~~GLI~~~~~~~~LT~kG~~~l 67 (95)
T 1r7j_A 38 GRYIKMLMDLEIIRQEGKQYMLTKKGEELL 67 (95)
T ss_dssp HHHHHHHHHTTSEEEETTEEEECHHHHHHH
T ss_pred HHHHHHHHHCCCeEEECCeeEEChhHHHHH
Confidence 345788999999998777799999999975
No 4
>2fxa_A Protease production regulatory protein HPR; protease porduction, regulation, STR genomics, PSI, protein structure initiative; HET: PGE P6G 1PE; 2.40A {Bacillus subtilis} SCOP: a.4.5.28
Probab=31.59 E-value=43 Score=28.54 Aligned_cols=77 Identities=9% Similarity=0.132 Sum_probs=51.1
Q ss_pred cccchhcccccchHHHHHHHHHHHhcccchhhHHhhCCCHH--HHHHHHHHhc---ccccCccccCCCCCHHHHHHHHHH
Q 040211 84 ESGFQFLLMDTNAQLWYIVREYISNSQHDSMLAYERGINQA--DLISFLLELS---FHVAGEAYNLKTLSEIQRSMIKDF 158 (310)
Q Consensus 84 ~~GFqFLL~d~~~QlW~lll~yL~~~e~~~~~~~~~g~~~~--e~L~FLf~Ls---~~~~g~~Y~~~~lt~~q~~~L~~L 158 (310)
..+|-|+|.....++|..+..+++..- ...|++.. .+|.+|..-+ ..++.+...++ ..+-..+|+.|
T Consensus 15 ~~~l~~~l~~~~r~~~r~~~~~~~~~l------~~~gLt~~q~~iL~~L~~~~~~t~~eLa~~l~i~--~stvs~~l~~L 86 (207)
T 2fxa_A 15 ALVFTQKMAQLSKALWKSIEKDWQQWL------KPYDLNINEHHILWIAYQLNGASISEIAKFGVMH--VSTAFNFSKKL 86 (207)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHT------GGGTCCHHHHHHHHHHHHHTSEEHHHHHHHTTCC--HHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHH------HHcCCCHHHHHHHHHHHHCCCcCHHHHHHHHCCC--HHHHHHHHHHH
Confidence 345678888888889888888886543 15578775 4566665432 23333333332 25567899999
Q ss_pred hhcCeeeEee
Q 040211 159 ADLGLVKLQQ 168 (310)
Q Consensus 159 ~~lGLVy~~~ 168 (310)
.+-|+|....
T Consensus 87 e~~GlV~r~~ 96 (207)
T 2fxa_A 87 EERGYLRFSK 96 (207)
T ss_dssp HHHTSEEEEC
T ss_pred HHCCCEEEec
Confidence 9999998764
No 5
>2v79_A DNA replication protein DNAD; primosome, DNA-binding protein; HET: DNA; 2.00A {Bacillus subtilis}
Probab=31.21 E-value=62 Score=26.31 Aligned_cols=50 Identities=18% Similarity=0.300 Sum_probs=38.8
Q ss_pred hhCCCHHHHHHHHHHhcccccCccccC-------CCCCHHH-HHHHHHHhhcCeeeEe
Q 040211 118 ERGINQADLISFLLELSFHVAGEAYNL-------KTLSEIQ-RSMIKDFADLGLVKLQ 167 (310)
Q Consensus 118 ~~g~~~~e~L~FLf~Ls~~~~g~~Y~~-------~~lt~~q-~~~L~~L~~lGLVy~~ 167 (310)
..|++..|++-.|+=..+.+-|.++++ -++++.+ .++|+.|.+-|+|...
T Consensus 27 ~LgLs~~E~~lLl~L~~~~~~g~~~ps~~~LA~~~~~s~~~v~~~L~~L~~KGlI~i~ 84 (135)
T 2v79_A 27 QLGLNETELILLLKIKMHLEKGSYFPTPNQLQEGMSISVEECTNRLRMFIQKGFLFIE 84 (135)
T ss_dssp HHTCCHHHHHHHHHHHHHHTTTCCSCCHHHHHTTSSSCHHHHHHHHHHHHHHTSCEEE
T ss_pred HhCCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEE
Confidence 457899888877777777777877766 2456655 7799999999999874
No 6
>2hgc_A YJCQ protein; SR346, structure, autostructure, NESG, PSI-2, northeast structural genomics consortium, protein structure initiative; NMR {Bacillus subtilis} SCOP: a.4.5.77
Probab=29.44 E-value=14 Score=29.48 Aligned_cols=45 Identities=18% Similarity=0.171 Sum_probs=24.8
Q ss_pred HhhHHHHHHHHhCCcccccccccchhHHHHHHhCCCcccCCCCCccccccchhcc
Q 040211 37 IGQWERFLLQLISSAQAERSINFCSSTMKVFQRGLLIQRDKEAPRLTESGFQFLL 91 (310)
Q Consensus 37 ~~~WE~iL~~mv~~~~~~~~~~~s~~v~~lL~~~~L~~~~~~~~~IT~~GFqFLL 91 (310)
.++|..|+..|+.-+--.+ ...... +-+-.+-+ +.||.+|.+||-
T Consensus 30 e~~~~~il~~L~d~GyI~G-v~~~~~--------~~~i~~~~-~~IT~~GleYL~ 74 (102)
T 2hgc_A 30 EDQFDDAVNFLKREGYIIG-VHYSDD--------RPHLYKLG-PELTEKGENYLK 74 (102)
T ss_dssp HHHHHHHHHHHHHHTSEEC-CEESSS--------SEECCSSC-CEECHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCccc-eEEEeC--------cceeeccC-ceECHHHHHHHH
Confidence 4678888888875443211 111111 11111112 679999999985
No 7
>1p6r_A Penicillinase repressor; transcription regulation, DNA-binding, winged helix protein, bacterial resistance to antibiotics; NMR {Bacillus licheniformis} SCOP: a.4.5.39 PDB: 2p7c_B
Probab=29.15 E-value=51 Score=23.53 Aligned_cols=31 Identities=13% Similarity=0.270 Sum_probs=22.2
Q ss_pred HHHHHHHHHHhhcCeeeEeeCCCcceeecCC
Q 040211 149 EIQRSMIKDFADLGLVKLQQGRKESWFIPTI 179 (310)
Q Consensus 149 ~~q~~~L~~L~~lGLVy~~~~~~~~fyipT~ 179 (310)
.+-..+|+.|.+-|+|...+......|.|+.
T Consensus 42 ~Tv~~~l~rL~~kGlv~r~~~gr~~~y~~~~ 72 (82)
T 1p6r_A 42 KTIQTMLLRLIKKGALNHHKEGRVFVYTPNI 72 (82)
T ss_dssp HHHHHHHHHHHHTTSEEEEEETTEEEEEESC
T ss_pred HHHHHHHHHHHHCCCeEEEecCCEEEEEeec
Confidence 5668999999999999876533334443654
No 8
>2htj_A P fimbrial regulatory protein KS71A; winged helix-turn-helix, PAP PILI, transcription activator; NMR {Escherichia coli} SCOP: a.4.5.73
Probab=28.97 E-value=37 Score=24.46 Aligned_cols=19 Identities=16% Similarity=0.144 Sum_probs=16.0
Q ss_pred HHHHHHHHHHhhcCeeeEe
Q 040211 149 EIQRSMIKDFADLGLVKLQ 167 (310)
Q Consensus 149 ~~q~~~L~~L~~lGLVy~~ 167 (310)
.+-...|+.|.+.|+|...
T Consensus 29 ~tv~r~L~~L~~~GlI~~~ 47 (81)
T 2htj_A 29 YQARYYLLLLEKAGMVQRS 47 (81)
T ss_dssp HHHHHHHHHHHHHTSEEEE
T ss_pred HHHHHHHHHHHHCCCEEEe
Confidence 5568899999999999754
No 9
>2jsc_A Transcriptional regulator RV1994C/MT2050; cadmium, transcriptional repressor, solution structure, STRU genomics; NMR {Mycobacterium tuberculosis}
Probab=27.99 E-value=54 Score=25.35 Aligned_cols=27 Identities=11% Similarity=0.119 Sum_probs=19.3
Q ss_pred HHHHHHHHHHhhcCeeeEeeCCCccee
Q 040211 149 EIQRSMIKDFADLGLVKLQQGRKESWF 175 (310)
Q Consensus 149 ~~q~~~L~~L~~lGLVy~~~~~~~~fy 175 (310)
.+-..-|+.|.+.|||...+.....+|
T Consensus 49 stvs~~L~~L~~~GlV~~~~~gr~~~y 75 (118)
T 2jsc_A 49 SNVSNHLSCLRGCGLVVATYEGRQVRY 75 (118)
T ss_dssp HHHHHHHHHHTTTTSEEEEECSSSEEE
T ss_pred HHHHHHHHHHHHCCceEEEEECCEEEE
Confidence 455778999999999987754333344
No 10
>3e19_A FEOA; transcriptional regulator, metal-binding, iron uptake, beta- transcription regulator, metal binding protein; HET: GOL; 2.00A {Thermococcus thioreducens}
Probab=27.92 E-value=16 Score=26.48 Aligned_cols=33 Identities=15% Similarity=0.141 Sum_probs=27.9
Q ss_pred HHhcccccCccccCCCCCHHHHHHHHHHhhcCee
Q 040211 131 LELSFHVAGEAYNLKTLSEIQRSMIKDFADLGLV 164 (310)
Q Consensus 131 f~Ls~~~~g~~Y~~~~lt~~q~~~L~~L~~lGLV 164 (310)
..|+.+..|+.+-+...+.. ..+++.|.++|++
T Consensus 5 ~~L~~l~~G~~~~I~~i~~~-~~~~~rL~~lGi~ 37 (77)
T 3e19_A 5 VPLSEMGPGDKGIVVNILGG-HNARQKLVSMGLT 37 (77)
T ss_dssp EEGGGCCTTCEEEEEEECSH-HHHHHHHHTTTCS
T ss_pred EEHhHCCCcCEEEEEEEECC-HHHHHHHHHCCCC
Confidence 35788899999998887765 6899999999994
No 11
>2k4b_A Transcriptional regulator; DNA binding protein, winged helix; NMR {Lactococcus lactis subsp}
Probab=27.79 E-value=51 Score=25.46 Aligned_cols=30 Identities=3% Similarity=0.205 Sum_probs=21.3
Q ss_pred HHHHHHHHHHhhcCeeeEeeCCCcceeecC
Q 040211 149 EIQRSMIKDFADLGLVKLQQGRKESWFIPT 178 (310)
Q Consensus 149 ~~q~~~L~~L~~lGLVy~~~~~~~~fyipT 178 (310)
.+-..+|+.|.+-|+|...+......|.|+
T Consensus 68 sTVt~~L~rLe~KGlV~R~~~gR~~~Y~p~ 97 (99)
T 2k4b_A 68 ATVKTLLGRLVKKEMLSTEKEGRKFVYRPL 97 (99)
T ss_dssp HHHHHHHHHHHHTTSCEEEEETTEEEEECC
T ss_pred hhHHHHHHHHHHCCCEEEEeCCCEEEEEEe
Confidence 567899999999999977653333333354
No 12
>3u5c_T 40S ribosomal protein S19-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_S 3o30_M 3o2z_M 3u5g_T 3jyv_T*
Probab=27.09 E-value=23 Score=29.97 Aligned_cols=33 Identities=12% Similarity=0.247 Sum_probs=26.2
Q ss_pred ccchhHHHHHHhCCCcccCC-CCCccccccchhc
Q 040211 58 NFCSSTMKVFQRGLLIQRDK-EAPRLTESGFQFL 90 (310)
Q Consensus 58 ~~s~~v~~lL~~~~L~~~~~-~~~~IT~~GFqFL 90 (310)
.+-..+++-|...||++.+. ++..||++|-++|
T Consensus 99 ~iiR~~LQqLE~~g~vek~~~~GR~lT~~G~~~L 132 (144)
T 3u5c_T 99 SINRKVLQALEKIGIVEISPKGGRRISENGQRDL 132 (144)
T ss_dssp HHHHHHHHHHHHTTSEECCSSSSCEECHHHHHHH
T ss_pred HHHHHHHHHHHHCCCeeecCCCCcEECHhHHHHH
Confidence 34446688889999999863 6789999998875
No 13
>1p4x_A Staphylococcal accessory regulator A homologue; winged-helix protein, transcription; 2.20A {Staphylococcus aureus} SCOP: a.4.5.28 a.4.5.28
Probab=24.70 E-value=84 Score=27.98 Aligned_cols=103 Identities=9% Similarity=0.140 Sum_probs=58.6
Q ss_pred hHHHHHHhCCCcccC----CC---CCccccccchhcccccchHHHHHHHHHHHhcccc----------------------
Q 040211 62 STMKVFQRGLLIQRD----KE---APRLTESGFQFLLMDTNAQLWYIVREYISNSQHD---------------------- 112 (310)
Q Consensus 62 ~v~~lL~~~~L~~~~----~~---~~~IT~~GFqFLL~d~~~QlW~lll~yL~~~e~~---------------------- 112 (310)
.+++-|...|++.+. +. -+.+|++|-+ ++......+..++-++.+. +.+
T Consensus 69 ~~l~rLe~~G~i~R~~~~~DrR~~~i~LT~~G~~-~~~~~~~~~~~~~eq~s~E-~~~~~~~~~~~~~~l~~~~~~~~~~ 146 (250)
T 1p4x_A 69 QHIKVLVKHSYISKVRSKIDERNTYISISEEQRE-KIAERVTLFDQIIKQFNLA-DQSESQMIPKDSKEFLNLMMYTMYF 146 (250)
T ss_dssp HHHHHHHHTTSCEEEECSSSTTSEEEECCHHHHH-HHHHHHHHHHHHHHHHHHH-TTCCSSCSCCSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCEEecCCCCCCCeEEEEECHHHHH-HHHHHHHHHHHHHHHHhcc-cccccccchHHHHHHHHHHHHHHHH
Confidence 456777889999842 11 4579999988 3444554444444444333 210
Q ss_pred -hhhHHhhCCCHHH--HHHHHHHh-----cccccCccccCCCCCHHHHHHHHHHhhcCeeeEee
Q 040211 113 -SMLAYERGINQAD--LISFLLEL-----SFHVAGEAYNLKTLSEIQRSMIKDFADLGLVKLQQ 168 (310)
Q Consensus 113 -~~~~~~~g~~~~e--~L~FLf~L-----s~~~~g~~Y~~~~lt~~q~~~L~~L~~lGLVy~~~ 168 (310)
..+++..|++..+ +|.+|..- +..++.+.-.++ ..+--.+++.|.+-|+|....
T Consensus 147 ~~~~~~~~gLt~~q~~vL~~L~~~~~~~~t~~eLa~~l~i~--~~tvt~~v~rLe~~GlV~R~~ 208 (250)
T 1p4x_A 147 KNIIKKHLTLSFVEFTILAIITSQNKNIVLLKDLIETIHHK--YPQTVRALNNLKKQGYLIKER 208 (250)
T ss_dssp HHHHHHHCSSCHHHHHHHHHHHTTTTCCEEHHHHHHHSSSC--HHHHHHHHHHHHHHTSSEEEE
T ss_pred HHHHHhhCCCCHHHHHHHHHHHhCCCCCcCHHHHHHHHCCC--hhhHHHHHHHHHHCCCEEeeC
Confidence 0012245777654 45555431 222333333332 255577999999999998765
No 14
>1wj5_A Hypothetical protein (riken cDNA 0610009H20); winged helix, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: a.4.5.59
Probab=23.24 E-value=47 Score=27.27 Aligned_cols=27 Identities=15% Similarity=0.310 Sum_probs=20.6
Q ss_pred HHHHHHHhhcCeeeEeeCCC-cceeecCC
Q 040211 152 RSMIKDFADLGLVKLQQGRK-ESWFIPTI 179 (310)
Q Consensus 152 ~~~L~~L~~lGLVy~~~~~~-~~fyipT~ 179 (310)
++-+.-|.|-|+||++.+.. +-|| .|.
T Consensus 81 KeAi~~Lqe~G~VfqK~~~~d~lYy-VT~ 108 (120)
T 1wj5_A 81 KNALQLLQEKGLVFQRDSGSDKLYY-VTT 108 (120)
T ss_dssp HHHHHHHHHHTSEECSSCSSSCCBE-ECS
T ss_pred HHHHHHHHHCCEEEeccCCccceEE-eec
Confidence 46678999999999997544 4788 554
No 15
>1xn7_A Hypothetical protein YHGG; alpha+beta, GFT structural genomics, protein structure initiative, PSI, NESG; NMR {Escherichia coli} SCOP: a.4.5.62
Probab=22.79 E-value=52 Score=24.46 Aligned_cols=26 Identities=12% Similarity=0.249 Sum_probs=20.0
Q ss_pred ccccCCCCCHHHHHHHHHHhhcCeeeEe
Q 040211 140 EAYNLKTLSEIQRSMIKDFADLGLVKLQ 167 (310)
Q Consensus 140 ~~Y~~~~lt~~q~~~L~~L~~lGLVy~~ 167 (310)
+.+.++. .+-+..|+.|.+.|+|..-
T Consensus 24 ~~l~VS~--~TIRrdL~~Le~~G~l~R~ 49 (78)
T 1xn7_A 24 QTLNTPQ--PMINAMLQQLESMGKAVRI 49 (78)
T ss_dssp HHTTCCH--HHHHHHHHHHHHHTSEEEE
T ss_pred HHHCcCH--HHHHHHHHHHHHCCCEEEe
Confidence 3444443 7889999999999999665
No 16
>1qgp_A Protein (double stranded RNA adenosine deaminase); Z-alpha-Z-DNA binding domain, RNA-editing, Z-DNA recognition, ADAR1, helix- turn-helix; NMR {Homo sapiens} SCOP: a.4.5.19
Probab=22.62 E-value=76 Score=23.20 Aligned_cols=50 Identities=18% Similarity=0.270 Sum_probs=31.4
Q ss_pred HHHHHHHHhc---cc---ccCccccCCCCCHHHHHHHHHHhhcCeeeEeeCCCcceee
Q 040211 125 DLISFLLELS---FH---VAGEAYNLKTLSEIQRSMIKDFADLGLVKLQQGRKESWFI 176 (310)
Q Consensus 125 e~L~FLf~Ls---~~---~~g~~Y~~~~lt~~q~~~L~~L~~lGLVy~~~~~~~~fyi 176 (310)
.+|.+|-+.+ -. ++.+...++. .+-...|..|.+-|+|.....++..|++
T Consensus 18 ~IL~~L~~~~~~~~~t~~eLA~~Lgvs~--~tV~~~L~~L~~~G~I~~~g~~~~~W~i 73 (77)
T 1qgp_A 18 RILKFLEELGEGKATTAHDLSGKLGTPK--KEINRVLYSLAKKGKLQKEAGTPPLWKI 73 (77)
T ss_dssp HHHHHHHHHCSSSCEEHHHHHHHHCCCH--HHHHHHHHHHHHHTSEEEECSSSCEEEE
T ss_pred HHHHHHHHcCCCCCcCHHHHHHHHCcCH--HHHHHHHHHHHHCCCEEecCCCCCceEe
Confidence 4566666655 22 2223333332 4567889999999999876555577774
No 17
>3cuo_A Uncharacterized HTH-type transcriptional regulato; DNA-binding transcriptional regulator, structural genomics, MCSG; 2.00A {Escherichia coli K12}
Probab=22.36 E-value=1e+02 Score=22.09 Aligned_cols=21 Identities=19% Similarity=0.311 Sum_probs=17.3
Q ss_pred HHHHHHHHHHhhcCeeeEeeC
Q 040211 149 EIQRSMIKDFADLGLVKLQQG 169 (310)
Q Consensus 149 ~~q~~~L~~L~~lGLVy~~~~ 169 (310)
.+-...|+.|.+.|+|...+.
T Consensus 53 ~tvs~~l~~L~~~glv~~~~~ 73 (99)
T 3cuo_A 53 SATSQHLARMRDEGLIDSQRD 73 (99)
T ss_dssp HHHHHHHHHHHHTTSEEEEEC
T ss_pred HHHHHHHHHHHHCCCEEEEec
Confidence 556789999999999987653
No 18
>2d4z_A Chloride channel protein; CLC chloride channel cytoplasmic domain, CBS domains, ION CH regulatory subunit, transport protein; 3.10A {Torpedo marmorata} SCOP: d.37.1.1
Probab=22.24 E-value=67 Score=28.58 Aligned_cols=35 Identities=20% Similarity=0.302 Sum_probs=26.1
Q ss_pred HHHHHHHhhhhcc-----CceEEEEeCHHHHHHHHHcCCC
Q 040211 200 EILRLFSKIEYQL-----PNLIVGAITKESLYNAVENGLT 234 (310)
Q Consensus 200 aiL~lF~~l~~rf-----PNlvvg~iTReSv~~Al~~GIT 234 (310)
.+..+|..+..|- -+=+||+|||.-+.+|+..-.|
T Consensus 210 ~v~~LF~~lglr~l~V~~~GrLVGIVTrkDl~kai~~~~~ 249 (250)
T 2d4z_A 210 KTHTLFSLLGLDRAYVTSMGKLVGVVALAEIQAAIEGSYQ 249 (250)
T ss_dssp HHHHHHHHHTCSEEEEEETTEEEEEEEHHHHHHHHHC---
T ss_pred HHHHHHHHhCCeEEEEEECCEEEEEEEHHHHHHHHHHHhc
Confidence 4678898887654 3568999999999999985443
No 19
>3jth_A Transcription activator HLYU; transcription factor, RTXA, DNA-binding, transcription regulation; 2.00A {Vibrio vulnificus}
Probab=22.15 E-value=1e+02 Score=22.53 Aligned_cols=27 Identities=11% Similarity=0.185 Sum_probs=20.1
Q ss_pred HHHHHHHHHHhhcCeeeEeeCCCccee
Q 040211 149 EIQRSMIKDFADLGLVKLQQGRKESWF 175 (310)
Q Consensus 149 ~~q~~~L~~L~~lGLVy~~~~~~~~fy 175 (310)
.+-..-|+.|.+.|||...+.....+|
T Consensus 51 ~tvs~~L~~L~~~Glv~~~~~g~~~~y 77 (98)
T 3jth_A 51 SALSQHLAWLRRDGLVTTRKEAQTVYY 77 (98)
T ss_dssp HHHHHHHHHHHHTTSEEEECCTTCCEE
T ss_pred HHHHHHHHHHHHCCCeEEEEeCCEEEE
Confidence 455778999999999987764444445
No 20
>3lab_A Putative KDPG (2-keto-3-deoxy-6-phosphogluconate) aldolase; unknown function, aldolase superfamily, class I aldolase, KDPG aldolase domain; 1.84A {Oleispira antarctica} PDB: 3vcr_A
Probab=22.09 E-value=66 Score=28.68 Aligned_cols=116 Identities=15% Similarity=0.199 Sum_probs=71.6
Q ss_pred ccccceEEEecCChhHHHHHHHHHhhhhccCceEEE---EeCHHHHHHHHHcCCCccc-cccChhhhh-----cC-----
Q 040211 183 LETNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVG---AITKESLYNAVENGLTAEQ-QNAHPRVAD-----RI----- 248 (310)
Q Consensus 183 vETNfRvYAYT~S~LqiaiL~lF~~l~~rfPNlvvg---~iTReSv~~Al~~GITA~Q-~hAHp~m~~-----~~----- 248 (310)
+|--|| +|-..+.+ ..+..+||.++|| ++|.+.++.|.+.|-.-== -+..|.+.+ ..
T Consensus 42 iEvt~~------t~~a~~~I---~~l~~~~p~~~IGAGTVlt~~~a~~ai~AGA~fivsP~~~~evi~~~~~~~v~~~~~ 112 (217)
T 3lab_A 42 LEVTLR------TEAGLAAI---SAIKKAVPEAIVGAGTVCTADDFQKAIDAGAQFIVSPGLTPELIEKAKQVKLDGQWQ 112 (217)
T ss_dssp EEEETT------STTHHHHH---HHHHHHCTTSEEEEECCCSHHHHHHHHHHTCSEEEESSCCHHHHHHHHHHHHHCSCC
T ss_pred EEEeCC------CccHHHHH---HHHHHHCCCCeEeeccccCHHHHHHHHHcCCCEEEeCCCcHHHHHHHHHcCCCccCC
Confidence 666555 45444444 4566788999997 7999999999999842211 234444432 23
Q ss_pred -CCCCh--hHHHHHHHHHHhcCceeecCcEEe--ccCCCC---ccccccEEEEecccchHHHHHHHh
Q 040211 249 -PSVLE--NVCDQIRLWESDLNRVEMTPAHYY--DEFPSR---EDSKKMRLVVNAEIHMHMREFLRG 307 (310)
Q Consensus 249 -p~iP~--tV~DQIrLWE~Er~Rl~~~~g~ly--~~f~s~---~~~~kr~~~V~~~~h~~vr~f~k~ 307 (310)
|++|- |..+=.+-|+.=-+-+++.++-.+ -+|.+. .-+.-+++.+..=.-+++.+|++.
T Consensus 113 ~~~~PG~~TptE~~~A~~~Gad~vK~FPa~~~gG~~~lkal~~p~p~i~~~ptGGI~~~N~~~~l~a 179 (217)
T 3lab_A 113 GVFLPGVATASEVMIAAQAGITQLKCFPASAIGGAKLLKAWSGPFPDIQFCPTGGISKDNYKEYLGL 179 (217)
T ss_dssp CEEEEEECSHHHHHHHHHTTCCEEEETTTTTTTHHHHHHHHHTTCTTCEEEEBSSCCTTTHHHHHHS
T ss_pred CeEeCCCCCHHHHHHHHHcCCCEEEECccccccCHHHHHHHHhhhcCceEEEeCCCCHHHHHHHHHC
Confidence 77785 777767789888999998886322 011111 123344554443345678888763
No 21
>1u2w_A CADC repressor, cadmium efflux system accessory protein; LEAD, SOFT metal ION resistance, ARSR/SM family, DNA binding protein; 1.90A {Staphylococcus aureus} SCOP: a.4.5.5 PDB: 3f72_A
Probab=21.97 E-value=48 Score=25.82 Aligned_cols=27 Identities=11% Similarity=0.263 Sum_probs=17.6
Q ss_pred HHHHHHHHHHhhcCeeeEeeCCCccee
Q 040211 149 EIQRSMIKDFADLGLVKLQQGRKESWF 175 (310)
Q Consensus 149 ~~q~~~L~~L~~lGLVy~~~~~~~~fy 175 (310)
.+-...|+.|.+.|+|...+.....+|
T Consensus 71 stvs~~L~~L~~~Glv~~~~~gr~~~y 97 (122)
T 1u2w_A 71 ANASHHLRTLYKQGVVNFRKEGKLALY 97 (122)
T ss_dssp HHHHHHHHHHHHTTSEEEC----CCEE
T ss_pred HHHHHHHHHHHHCCCeEEEEECCEEEE
Confidence 455778999999999987653333444
No 22
>3mhx_A Putative ferrous iron transport protein A; FEOA, zinc binding, prokaryotic SH3 stenotrophomonus maltophilia, metal transport; 1.70A {Stenotrophomonas maltophilia}
Probab=21.52 E-value=12 Score=27.97 Aligned_cols=33 Identities=15% Similarity=0.247 Sum_probs=27.0
Q ss_pred HhcccccCccccCCCCC--HHHHHHHHHHhhcCee
Q 040211 132 ELSFHVAGEAYNLKTLS--EIQRSMIKDFADLGLV 164 (310)
Q Consensus 132 ~Ls~~~~g~~Y~~~~lt--~~q~~~L~~L~~lGLV 164 (310)
.|+.+..|+.+-+...+ .....++++|.++||+
T Consensus 3 ~L~~l~~G~~~~I~~i~~~~~~~~~~~rL~~lGl~ 37 (85)
T 3mhx_A 3 TLSELPLHTSAVVESVQDLHANDAIARRLRELGFV 37 (85)
T ss_dssp BGGGCCTTEEEEEEEECCSSSSCHHHHHHHHTTCC
T ss_pred CHHHCCCCCEEEEEEEECCCCCHHHHHHHHHCCCC
Confidence 47788899988888775 5567899999999994
No 23
>1q1h_A TFE, transcription factor E, TFE; TFIIE, transcription initiation, preinitiation complex, RNA polymerase II, transcription bubble; 2.90A {Sulfolobus solfataricus} SCOP: a.4.5.41
Probab=21.37 E-value=70 Score=24.02 Aligned_cols=44 Identities=18% Similarity=0.339 Sum_probs=29.5
Q ss_pred CHHHHHHHHHH----hcccccCccccCCCCCHHHHHHHHHHhhcCeeeEe
Q 040211 122 NQADLISFLLE----LSFHVAGEAYNLKTLSEIQRSMIKDFADLGLVKLQ 167 (310)
Q Consensus 122 ~~~e~L~FLf~----Ls~~~~g~~Y~~~~lt~~q~~~L~~L~~lGLVy~~ 167 (310)
...++|..++. ++..++.+.+.++. .+-+..|+.|.+.|+|...
T Consensus 19 ~~l~Il~~l~~~g~~~s~~eLa~~lgvs~--~tV~~~L~~L~~~GlV~~~ 66 (110)
T 1q1h_A 19 DVIDVLRILLDKGTEMTDEEIANQLNIKV--NDVRKKLNLLEEQGFVSYR 66 (110)
T ss_dssp TTHHHHHHHHHHCSCBCHHHHHHTTTSCH--HHHHHHHHHHHHHTSCEEE
T ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHCcCH--HHHHHHHHHHHHCCCEEEE
Confidence 44566666653 33344444555543 6778999999999999876
No 24
>4e38_A Keto-hydroxyglutarate-aldolase/keto-deoxy-phospho aldolase; lyase; 1.64A {Vibrionales bacterium swat-3}
Probab=20.87 E-value=74 Score=28.50 Aligned_cols=144 Identities=16% Similarity=0.181 Sum_probs=82.6
Q ss_pred HHHHHHhhcCeeeEeeCCC-cceeecCC----CCc---ccccceEEEecCChhHHHHHHHHHhhhhccCceEEE---EeC
Q 040211 153 SMIKDFADLGLVKLQQGRK-ESWFIPTI----ADS---LETNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVG---AIT 221 (310)
Q Consensus 153 ~~L~~L~~lGLVy~~~~~~-~~fyipT~----S~g---vETNfRvYAYT~S~LqiaiL~lF~~l~~rfPNlvvg---~iT 221 (310)
++++.|.+.|+|-.-...+ ..-. +.- .+| +|--+| +|-.. ..+.++..++|++++| ++|
T Consensus 26 ~~~~~l~~~~vv~Vir~~~~~~a~-~~a~al~~gGi~~iEvt~~------t~~a~---e~I~~l~~~~~~~~iGaGTVlt 95 (232)
T 4e38_A 26 TINNQLKALKVIPVIAIDNAEDII-PLGKVLAENGLPAAEITFR------SDAAV---EAIRLLRQAQPEMLIGAGTILN 95 (232)
T ss_dssp HHHHHHHHHCEEEEECCSSGGGHH-HHHHHHHHTTCCEEEEETT------STTHH---HHHHHHHHHCTTCEEEEECCCS
T ss_pred HHHHHHHhCCEEEEEEcCCHHHHH-HHHHHHHHCCCCEEEEeCC------CCCHH---HHHHHHHHhCCCCEEeECCcCC
Confidence 5888899999985543222 1111 000 134 665444 34333 4455667788999998 899
Q ss_pred HHHHHHHHHcCCCccc-cccChhhhh-----cCCCCCh--hHHHHHHHHHHhcCceeecCcEEe--ccCCCC-cc--ccc
Q 040211 222 KESLYNAVENGLTAEQ-QNAHPRVAD-----RIPSVLE--NVCDQIRLWESDLNRVEMTPAHYY--DEFPSR-ED--SKK 288 (310)
Q Consensus 222 ReSv~~Al~~GITA~Q-~hAHp~m~~-----~~p~iP~--tV~DQIrLWE~Er~Rl~~~~g~ly--~~f~s~-~~--~~k 288 (310)
.+.++.|++.|-.-=- -+..|.+.+ ..|++|- |..+=.+-|+.=-+-++++++-.. -+|.+. .. +.-
T Consensus 96 ~~~a~~Ai~AGA~fIvsP~~~~~vi~~~~~~gi~~ipGv~TptEi~~A~~~Gad~vK~FPa~~~gG~~~lkal~~p~p~i 175 (232)
T 4e38_A 96 GEQALAAKEAGATFVVSPGFNPNTVRACQEIGIDIVPGVNNPSTVEAALEMGLTTLKFFPAEASGGISMVKSLVGPYGDI 175 (232)
T ss_dssp HHHHHHHHHHTCSEEECSSCCHHHHHHHHHHTCEEECEECSHHHHHHHHHTTCCEEEECSTTTTTHHHHHHHHHTTCTTC
T ss_pred HHHHHHHHHcCCCEEEeCCCCHHHHHHHHHcCCCEEcCCCCHHHHHHHHHcCCCEEEECcCccccCHHHHHHHHHHhcCC
Confidence 9999999999853221 122333221 2455564 666667789998999999875211 011111 22 334
Q ss_pred cEEEEecccchHHHHHHH
Q 040211 289 MRLVVNAEIHMHMREFLR 306 (310)
Q Consensus 289 r~~~V~~~~h~~vr~f~k 306 (310)
+++.+..=.-+++++|++
T Consensus 176 p~~ptGGI~~~n~~~~l~ 193 (232)
T 4e38_A 176 RLMPTGGITPSNIDNYLA 193 (232)
T ss_dssp EEEEBSSCCTTTHHHHHT
T ss_pred CeeeEcCCCHHHHHHHHH
Confidence 445444334566888875
No 25
>2k5l_A FEOA; structure, NESG, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; NMR {Clostridium thermocellum atcc 27405}
Probab=20.59 E-value=16 Score=27.06 Aligned_cols=32 Identities=16% Similarity=0.311 Sum_probs=26.3
Q ss_pred HhcccccCccccCCCCCHHHHHHHHHHhhcCee
Q 040211 132 ELSFHVAGEAYNLKTLSEIQRSMIKDFADLGLV 164 (310)
Q Consensus 132 ~Ls~~~~g~~Y~~~~lt~~q~~~L~~L~~lGLV 164 (310)
.|+.+..|+.+-+...+. ...+++.|.++||+
T Consensus 3 ~Ls~l~~G~~~~I~~i~~-~~~~~~rL~~lGl~ 34 (81)
T 2k5l_A 3 SLRDAKCGQTVKVVKLHG-TGALKRRIMDMGIT 34 (81)
T ss_dssp BGGGSCTTCEEEEEEECS-SSHHHHHHHHHTCC
T ss_pred EHHHCCCcCEEEEEEEEC-CHHHHHHHHHCCCC
Confidence 478888999888877665 56789999999994
Done!