Query 040211
Match_columns 310
No_of_seqs 120 out of 192
Neff 5.0
Searched_HMMs 13730
Date Mon Mar 25 09:33:20 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040211.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/040211hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1r7ja_ a.4.5.49 (A:) Sso10a ( 68.5 0.56 4.1E-05 34.9 0.3 30 62-91 37-66 (90)
2 d2p5ka1 a.4.5.3 (A:2-64) Argin 46.8 5.4 0.00039 27.4 2.4 42 122-175 20-61 (63)
3 d1stza1 a.4.5.51 (A:14-100) He 46.6 6.9 0.0005 28.4 3.1 40 138-179 29-68 (87)
4 d1mxsa_ c.1.10.1 (A:) KDPG ald 44.1 25 0.0018 29.2 6.9 122 183-307 39-177 (216)
5 d1dpua_ a.4.5.16 (A:) C-termin 41.9 17 0.0012 25.2 4.5 59 92-175 5-64 (69)
6 d1b4aa1 a.4.5.3 (A:4-78) Argin 41.4 8.3 0.0006 27.3 2.8 42 122-175 18-59 (75)
7 d1wj5a_ a.4.5.59 (A:) OB fold- 38.4 8.5 0.00062 29.7 2.6 29 150-179 79-108 (120)
8 d1aoya_ a.4.5.3 (A:) Arginine 37.1 10 0.00073 27.1 2.7 43 122-175 25-67 (78)
9 d1jhfa1 a.4.5.2 (A:2-72) LexA 35.3 10 0.00075 26.0 2.5 62 91-175 3-66 (71)
10 d1wbha1 c.1.10.1 (A:1-213) KDP 34.1 30 0.0022 28.6 5.7 122 183-307 37-175 (213)
11 d1b0na1 a.34.1.1 (A:74-108) Si 33.5 7.2 0.00052 23.8 1.1 14 224-237 8-21 (35)
12 d1vhca_ c.1.10.1 (A:) Hypothet 32.6 39 0.0028 27.8 6.2 152 151-307 4-174 (212)
13 d1pbja3 d.37.1.1 (A:2-121) Hyp 26.3 9.8 0.00072 27.5 1.1 38 214-251 40-77 (120)
14 d1p6ra_ a.4.5.39 (A:) Penicill 25.0 29 0.0021 24.2 3.4 31 149-179 42-72 (82)
15 d2p8ta1 a.4.5.72 (A:14-82) Hyp 23.9 11 0.00079 26.4 0.8 29 62-90 36-64 (69)
16 d1sfxa_ a.4.5.50 (A:) Hypothet 23.2 77 0.0056 22.4 5.8 51 118-168 15-68 (109)
17 d1in4a1 a.4.5.11 (A:255-329) H 22.0 7.6 0.00056 27.7 -0.4 31 63-93 43-73 (75)
18 d1a9xa1 a.92.1.1 (A:403-555) C 21.7 29 0.0021 27.2 3.1 20 224-243 36-59 (153)
19 d1mska_ d.173.1.1 (A:) Methion 20.9 15 0.0011 32.6 1.4 57 253-309 243-308 (327)
20 d1onfa3 d.87.1.1 (A:377-495) G 20.7 15 0.0011 27.1 1.1 19 227-245 90-112 (119)
21 d1wa3a1 c.1.10.1 (A:2-203) KDP 20.2 39 0.0029 27.5 3.8 97 211-307 58-169 (202)
No 1
>d1r7ja_ a.4.5.49 (A:) Sso10a (SSO10449) {Archaeon Sulfolobus solfataricus [TaxId: 2287]}
Probab=68.50 E-value=0.56 Score=34.86 Aligned_cols=30 Identities=20% Similarity=0.243 Sum_probs=25.7
Q ss_pred hHHHHHHhCCCcccCCCCCccccccchhcc
Q 040211 62 STMKVFQRGLLIQRDKEAPRLTESGFQFLL 91 (310)
Q Consensus 62 ~v~~lL~~~~L~~~~~~~~~IT~~GFqFLL 91 (310)
..++.|...||++.+++...||++|..||=
T Consensus 37 kyl~~L~~~GLI~~~~~~Y~iT~kG~~~L~ 66 (90)
T d1r7ja_ 37 RYIKMLMDLEIIRQEGKQYMLTKKGEELLE 66 (90)
T ss_dssp HHHHHHHHTTSEEEETTEEEECHHHHHHHH
T ss_pred HHHHHHHHCCCeeecCCEEEECccHHHHHH
Confidence 447788999999887778899999999984
No 2
>d2p5ka1 a.4.5.3 (A:2-64) Arginine repressor (ArgR), N-terminal DNA-binding domain {Bacillus subtilis [TaxId: 1423]}
Probab=46.79 E-value=5.4 Score=27.42 Aligned_cols=42 Identities=21% Similarity=0.366 Sum_probs=31.1
Q ss_pred CHHHHHHHHHHhcccccCccccCCCCCHHHHHHHHHHhhcCeeeEeeCCCccee
Q 040211 122 NQADLISFLLELSFHVAGEAYNLKTLSEIQRSMIKDFADLGLVKLQQGRKESWF 175 (310)
Q Consensus 122 ~~~e~L~FLf~Ls~~~~g~~Y~~~~lt~~q~~~L~~L~~lGLVy~~~~~~~~fy 175 (310)
+..|++..|-.-|+ .-+|-++=+||+|+|+|..+..++..+|
T Consensus 20 tQ~eL~~~L~~~G~------------~vTQaTlSRDL~eLg~vKv~~~~g~~~Y 61 (63)
T d2p5ka1 20 TQDELVDMLKQDGY------------KVTQATVSRDIKELHLVKVPTNNGSYKY 61 (63)
T ss_dssp SHHHHHHHHHHTTC------------CCCHHHHHHHHHHHTCEEEEETTTEEEE
T ss_pred CHHHHHHHHHHcCC------------CeeHHHHHHHHHHhCCEEeeCCCCcEEe
Confidence 44566665555443 3578889999999999999987776666
No 3
>d1stza1 a.4.5.51 (A:14-100) Heat-inducible transcription repressor HrcA, N-terminal domain {Thermotoga maritima [TaxId: 2336]}
Probab=46.59 E-value=6.9 Score=28.35 Aligned_cols=40 Identities=25% Similarity=0.229 Sum_probs=27.3
Q ss_pred cCccccCCCCCHHHHHHHHHHhhcCeeeEeeCCCcceeecCC
Q 040211 138 AGEAYNLKTLSEIQRSMIKDFADLGLVKLQQGRKESWFIPTI 179 (310)
Q Consensus 138 ~g~~Y~~~~lt~~q~~~L~~L~~lGLVy~~~~~~~~fyipT~ 179 (310)
+.+.+..+--+-+-++.|..|.+.|+|.+.-..+.+ +||.
T Consensus 29 i~~~~~l~~S~aTIRn~m~~LE~~G~l~~~h~s~Gr--iPT~ 68 (87)
T d1stza1 29 VLEVSNIEFSSATIRNDMKKLEYLGYIYQPHTSAGR--IPTD 68 (87)
T ss_dssp HHHHSCCCSCHHHHHHHHHHHHHTTSEECCSSCSCB--EECH
T ss_pred HHHHhCCCCCHHHHHHHHHHHHHCCcccCCCCCCCC--cccH
Confidence 334555544468889999999999999885433333 3664
No 4
>d1mxsa_ c.1.10.1 (A:) KDPG aldolase {Pseudomonas putida [TaxId: 303]}
Probab=44.07 E-value=25 Score=29.20 Aligned_cols=122 Identities=11% Similarity=0.077 Sum_probs=82.0
Q ss_pred ccccceEEEecC-ChhHHHHHHHHHhhhhccCceEEE---EeCHHHHHHHHHcCCCccc-cccChhhhh-----cCCCCC
Q 040211 183 LETNFRMYAYST-SKLHCEILRLFSKIEYQLPNLIVG---AITKESLYNAVENGLTAEQ-QNAHPRVAD-----RIPSVL 252 (310)
Q Consensus 183 vETNfRvYAYT~-S~LqiaiL~lF~~l~~rfPNlvvg---~iTReSv~~Al~~GITA~Q-~hAHp~m~~-----~~p~iP 252 (310)
++-.+++.-.|- +|--+ .....+..+||++.+| ++|.+.+++|.+.|..-== -+..|.+.+ ..|.+|
T Consensus 39 ~~~Gi~~iEitl~~p~a~---~~i~~l~~~~p~~~vGaGTV~~~~~~~~a~~aGa~FivsP~~~~~v~~~a~~~~i~~iP 115 (216)
T d1mxsa_ 39 AAGGIRTLEVTLRSQHGL---KAIQVLREQRPELCVGAGTVLDRSMFAAVEAAGAQFVVTPGITEDILEAGVDSEIPLLP 115 (216)
T ss_dssp HHTTCCEEEEESSSTHHH---HHHHHHHHHCTTSEEEEECCCSHHHHHHHHHHTCSSEECSSCCHHHHHHHHHCSSCEEC
T ss_pred HHCCCCEEEEeCCChhHH---HHHHHHHHhCCCcceeeeeeecHHHHHHHHhCCCCEEECCCCcHHHHHHHHhcCCCccC
Confidence 677788866664 45434 4455667799999996 6899999999999974322 455555543 357788
Q ss_pred h--hHHHHHHHHHHhcCceeecCc-EE-eccCCCC---ccccccEEEEecccchHHHHHHHh
Q 040211 253 E--NVCDQIRLWESDLNRVEMTPA-HY-YDEFPSR---EDSKKMRLVVNAEIHMHMREFLRG 307 (310)
Q Consensus 253 ~--tV~DQIrLWE~Er~Rl~~~~g-~l-y~~f~s~---~~~~kr~~~V~~~~h~~vr~f~k~ 307 (310)
= |..+=...|+.=.+-+|+.|+ .. =-+|.+. --+.-+++-+..=.-+++++|++.
T Consensus 116 Gv~TpsEi~~A~~~G~~~vKlFPA~~~~g~~~ikal~~p~p~~~fiptGGV~~~n~~~yl~~ 177 (216)
T d1mxsa_ 116 GISTPSEIMMGYALGYRRFKLFPAEISGGVAAIKAFGGPFGDIRFCPTGGVNPANVRNYMAL 177 (216)
T ss_dssp EECSHHHHHHHHTTTCCEEEETTHHHHTHHHHHHHHHTTTTTCEEEEBSSCCTTTHHHHHHS
T ss_pred CcCCHHHHHHHHHCCCCEEEeccccccccHHHHHHHhcccccCceeccCCCCHHHHHHHHhc
Confidence 5 788888999999999999996 32 2233332 123445555444445668888763
No 5
>d1dpua_ a.4.5.16 (A:) C-terminal domain of RPA32 {Human (Homo sapiens) [TaxId: 9606]}
Probab=41.89 E-value=17 Score=25.20 Aligned_cols=59 Identities=15% Similarity=0.221 Sum_probs=37.1
Q ss_pred cccchHHHHHHHHHHHhcccchhhHHhhCCCHHHHHHHHHHhcccccCccccCCCCCHHH-HHHHHHHhhcCeeeEeeCC
Q 040211 92 MDTNAQLWYIVREYISNSQHDSMLAYERGINQADLISFLLELSFHVAGEAYNLKTLSEIQ-RSMIKDFADLGLVKLQQGR 170 (310)
Q Consensus 92 ~d~~~QlW~lll~yL~~~e~~~~~~~~~g~~~~e~L~FLf~Ls~~~~g~~Y~~~~lt~~q-~~~L~~L~~lGLVy~~~~~ 170 (310)
...+.||+.++. ... ...|+...++..-| .+++..+ +..++.|.+-|+||.-. +
T Consensus 5 s~~q~~V~~~i~----s~~------~~eGi~~~el~~~l--------------~~~~~~~i~~aid~L~~eG~IYsTi-D 59 (69)
T d1dpua_ 5 TVAQNQVLNLIK----ACP------RPEGLNFQDLKNQL--------------KHMSVSSIKQAVDFLSNEGHIYSTV-D 59 (69)
T ss_dssp CHHHHHHHHHHH----HCC------CTTTEEHHHHHHHS--------------TTSCHHHHHHHHHHHHHTTSEEECS-S
T ss_pred CHHHHHHHHHHH----hCC------CccCcCHHHHHHHc--------------cCCCHHHHHHHHHHHHhCCceeccc-c
Confidence 344556665554 332 15688887776622 2456665 78999999999999653 3
Q ss_pred Cccee
Q 040211 171 KESWF 175 (310)
Q Consensus 171 ~~~fy 175 (310)
..-|-
T Consensus 60 ddHfk 64 (69)
T d1dpua_ 60 DDHFK 64 (69)
T ss_dssp TTEEE
T ss_pred cchhc
Confidence 33443
No 6
>d1b4aa1 a.4.5.3 (A:4-78) Arginine repressor (ArgR), N-terminal DNA-binding domain {Bacillus stearothermophilus [TaxId: 1422]}
Probab=41.35 E-value=8.3 Score=27.31 Aligned_cols=42 Identities=24% Similarity=0.374 Sum_probs=31.1
Q ss_pred CHHHHHHHHHHhcccccCccccCCCCCHHHHHHHHHHhhcCeeeEeeCCCccee
Q 040211 122 NQADLISFLLELSFHVAGEAYNLKTLSEIQRSMIKDFADLGLVKLQQGRKESWF 175 (310)
Q Consensus 122 ~~~e~L~FLf~Ls~~~~g~~Y~~~~lt~~q~~~L~~L~~lGLVy~~~~~~~~fy 175 (310)
+..|++..|-..|+ +-+|-++=+||+++|+|..+..++..+|
T Consensus 18 tQ~eL~~~L~~~Gi------------~vTQaTlSRDL~eLg~vKv~~~~g~~~Y 59 (75)
T d1b4aa1 18 TQDELVDRLREAGF------------NVTQATVSRDIKEMQLVKVPMANGRYKY 59 (75)
T ss_dssp SHHHHHHHHHHTTC------------CCCHHHHHHHHHHTTCEEEECSSSCEEE
T ss_pred CHHHHHHHHHHcCC------------ceeHHHHHHHHHHhCCEEeeCCCCcEEE
Confidence 44566665555444 3578889999999999999877776667
No 7
>d1wj5a_ a.4.5.59 (A:) OB fold-containing protein 1, Obfc1 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=38.40 E-value=8.5 Score=29.71 Aligned_cols=29 Identities=14% Similarity=0.295 Sum_probs=22.4
Q ss_pred HHHHHHHHHhhcCeeeEeeCCC-cceeecCC
Q 040211 150 IQRSMIKDFADLGLVKLQQGRK-ESWFIPTI 179 (310)
Q Consensus 150 ~q~~~L~~L~~lGLVy~~~~~~-~~fyipT~ 179 (310)
-.++.+.-|.|-|+||++.+.. ..|| .|.
T Consensus 79 iFKeAi~~Lqe~G~VFqK~~~~D~lYy-VT~ 108 (120)
T d1wj5a_ 79 VFKNALQLLQEKGLVFQRDSGSDKLYY-VTT 108 (120)
T ss_dssp HHHHHHHHHHHHTSEECSSCSSSCCBE-ECS
T ss_pred HHHHHHHHHHHCCEEEecCCCccceEE-eec
Confidence 3466889999999999997644 5888 554
No 8
>d1aoya_ a.4.5.3 (A:) Arginine repressor (ArgR), N-terminal DNA-binding domain {Escherichia coli [TaxId: 562]}
Probab=37.08 E-value=10 Score=27.07 Aligned_cols=43 Identities=19% Similarity=0.328 Sum_probs=32.3
Q ss_pred CHHHHHHHHHHhcccccCccccCCCCCHHHHHHHHHHhhcCeeeEeeCCCccee
Q 040211 122 NQADLISFLLELSFHVAGEAYNLKTLSEIQRSMIKDFADLGLVKLQQGRKESWF 175 (310)
Q Consensus 122 ~~~e~L~FLf~Ls~~~~g~~Y~~~~lt~~q~~~L~~L~~lGLVy~~~~~~~~fy 175 (310)
+..|++..|-.-|+-. =+|-++=+||+|+|+|..+..++..+|
T Consensus 25 tQ~eL~~~L~~~G~~~-----------vTQaTiSRDL~eLg~vKv~~~~g~~~Y 67 (78)
T d1aoya_ 25 SQGEIVAALQEQGFDN-----------INQSKVSRMLTKFGAVRTRNAKMEMVY 67 (78)
T ss_dssp SHHHHHHHHHHHTCSS-----------CCHHHHHHHHHHHTCEEEECTTSCEEE
T ss_pred CHHHHHHHHHHcCCcc-----------hhHHHHHHHHHHhCCEEeeCCCCCEEE
Confidence 4556666666655531 368888899999999999987777777
No 9
>d1jhfa1 a.4.5.2 (A:2-72) LexA repressor, N-terminal DNA-binding domain {Escherichia coli [TaxId: 562]}
Probab=35.26 E-value=10 Score=25.97 Aligned_cols=62 Identities=16% Similarity=0.385 Sum_probs=40.0
Q ss_pred ccccchHHHHHHHHHHHhcccchhhHHhhCC--CHHHHHHHHHHhcccccCccccCCCCCHHHHHHHHHHhhcCeeeEee
Q 040211 91 LMDTNAQLWYIVREYISNSQHDSMLAYERGI--NQADLISFLLELSFHVAGEAYNLKTLSEIQRSMIKDFADLGLVKLQQ 168 (310)
Q Consensus 91 L~d~~~QlW~lll~yL~~~e~~~~~~~~~g~--~~~e~L~FLf~Ls~~~~g~~Y~~~~lt~~q~~~L~~L~~lGLVy~~~ 168 (310)
|-+++.+|+.+|..|+..- |. +..|+-. .+.+. -+.+-...|..|.+.|+|-...
T Consensus 3 LT~rQ~~vL~~I~~~~~~~----------G~~Ps~rei~~------------~~g~~-S~stv~~~l~~Le~kG~I~r~~ 59 (71)
T d1jhfa1 3 LTARQQEVFDLIRDHISQT----------GMPPTRAEIAQ------------RLGFR-SPNAAEEHLKALARKGVIEIVS 59 (71)
T ss_dssp CCHHHHHHHHHHHHHHHHH----------SSCCCHHHHHH------------HTTCS-SHHHHHHHHHHHHHTTSEEECS
T ss_pred CCHHHHHHHHHHHHHHHHh----------CCCCCHHHHHH------------HcCCC-CHHHHHHHHHHHHHCcCeecCC
Confidence 4567788888888888753 33 2234332 22222 1346789999999999998765
Q ss_pred CCCccee
Q 040211 169 GRKESWF 175 (310)
Q Consensus 169 ~~~~~fy 175 (310)
..++..-
T Consensus 60 ~~~R~i~ 66 (71)
T d1jhfa1 60 GASRGIR 66 (71)
T ss_dssp SSSSCEE
T ss_pred CCCceeE
Confidence 5554443
No 10
>d1wbha1 c.1.10.1 (A:1-213) KDPG aldolase {Escherichia coli [TaxId: 562]}
Probab=34.10 E-value=30 Score=28.60 Aligned_cols=122 Identities=15% Similarity=0.153 Sum_probs=81.6
Q ss_pred ccccceEEEecCC-hhHHHHHHHHHhhhhccCceEEE---EeCHHHHHHHHHcCCCccc-cccChhhhh-----cCCCCC
Q 040211 183 LETNFRMYAYSTS-KLHCEILRLFSKIEYQLPNLIVG---AITKESLYNAVENGLTAEQ-QNAHPRVAD-----RIPSVL 252 (310)
Q Consensus 183 vETNfRvYAYT~S-~LqiaiL~lF~~l~~rfPNlvvg---~iTReSv~~Al~~GITA~Q-~hAHp~m~~-----~~p~iP 252 (310)
++-.+++--.|-+ |-= +..+.++..+||++++| ++|.+.+++|.+.|..-== -+.+|.+.+ ..|.+|
T Consensus 37 ~~~Gi~~iEitl~tp~a---~~~I~~l~~~~p~~~vGaGTV~~~~~~~~a~~aGa~FivSP~~~~~v~~~a~~~~i~~iP 113 (213)
T d1wbha1 37 VAGGVRVLNVTLRTECA---VDAIRAIAKEVPEAIVGAGTVLNPQQLAEVTEAGAQFAISPGLTEPLLKAATEGTIPLIP 113 (213)
T ss_dssp HHTTCCEEEEESCSTTH---HHHHHHHHHHCTTSEEEEESCCSHHHHHHHHHHTCSCEEESSCCHHHHHHHHHSSSCEEE
T ss_pred HHCCCCEEEEeCCChhH---HHHHHHHHHHCCCCeeeccccccHHHHHHHHHCCCcEEECCCCCHHHHHHHHhcCCCccC
Confidence 5566666666633 332 45556667799999997 5899999999999965433 455555543 257777
Q ss_pred h--hHHHHHHHHHHhcCceeecCcEEe--ccCCCC-c--cccccEEEEecccchHHHHHHHh
Q 040211 253 E--NVCDQIRLWESDLNRVEMTPAHYY--DEFPSR-E--DSKKMRLVVNAEIHMHMREFLRG 307 (310)
Q Consensus 253 ~--tV~DQIrLWE~Er~Rl~~~~g~ly--~~f~s~-~--~~~kr~~~V~~~~h~~vr~f~k~ 307 (310)
= |..+=...|+.=.+-+|+.|+-.+ -+|.+. . -+.-+++-+..=.-+++++|++.
T Consensus 114 Gv~TpsEi~~A~~~G~~~vKlFPA~~~Gg~~~lkal~~p~p~~~~~ptGGV~~~n~~~yl~~ 175 (213)
T d1wbha1 114 GISTVSELMLGMDYGLKEFKFFPAEANGGVKALQAIAGPFSQVRFCPTGGISPANYRDYLAL 175 (213)
T ss_dssp EESSHHHHHHHHHTTCCEEEETTTTTTTHHHHHHHHHTTCTTCEEEEBSSCCTTTHHHHHTS
T ss_pred CcCCHHHHHHHHHCCCCEEEeccchhcChHHHHHHhcCcccCCceeeeCCCCHHHHHHHHhC
Confidence 5 778888899999999999997433 133333 1 23445555444455678888764
No 11
>d1b0na1 a.34.1.1 (A:74-108) SinR repressor dimerisation domain {Bacillus subtilis [TaxId: 1423]}
Probab=33.54 E-value=7.2 Score=23.81 Aligned_cols=14 Identities=21% Similarity=0.437 Sum_probs=12.7
Q ss_pred HHHHHHHcCCCccc
Q 040211 224 SLYNAVENGLTAEQ 237 (310)
Q Consensus 224 Sv~~Al~~GITA~Q 237 (310)
=|+.|+.+||+-+|
T Consensus 8 lVkeAM~SGvSK~Q 21 (35)
T d1b0na1 8 LVRDAMTSGVSKKQ 21 (35)
T ss_dssp HHHHHHHSCCCHHH
T ss_pred HHHHHHHccCCHHH
Confidence 47999999999998
No 12
>d1vhca_ c.1.10.1 (A:) Hypothetical protein HI0047 {Haemophilus influenzae [TaxId: 727]}
Probab=32.60 E-value=39 Score=27.79 Aligned_cols=152 Identities=13% Similarity=0.171 Sum_probs=96.0
Q ss_pred HHHHHHHHhhcCeeeEeeCCC-cceeecCCCCc-ccccceEEEecCC-hhHHHHHHHHHhhhhccCceEEE---EeCHHH
Q 040211 151 QRSMIKDFADLGLVKLQQGRK-ESWFIPTIADS-LETNFRMYAYSTS-KLHCEILRLFSKIEYQLPNLIVG---AITKES 224 (310)
Q Consensus 151 q~~~L~~L~~lGLVy~~~~~~-~~fyipT~S~g-vETNfRvYAYT~S-~LqiaiL~lF~~l~~rfPNlvvg---~iTReS 224 (310)
-+++++.|.+.++|-.-...+ ...- +. ..- ++-.+|+.-.|-+ |-- +....++..++|++.+| ++|.+.
T Consensus 4 ~~~~~~~l~~~~iipvlr~~~~~~~~-~~-~~al~~~Gi~~iEitl~~~~a---~~~I~~l~~~~p~~~vGaGTV~~~~~ 78 (212)
T d1vhca_ 4 TQQIIEKLRELKIVPVIALDNADDIL-PL-ADTLAKNGLSVAEITFRSEAA---ADAIRLLRANRPDFLIAAGTVLTAEQ 78 (212)
T ss_dssp HHHHHHHHHHHCEEEEECCSSGGGHH-HH-HHHHHHTTCCEEEEETTSTTH---HHHHHHHHHHCTTCEEEEESCCSHHH
T ss_pred HHHHHHHHHHCCEEEEEeCCCHHHHH-HH-HHHHHHCCCCEEEEeCCChhH---HHHHHHHHhcCCCceEeeeecccHHH
Confidence 357888999999986543221 1110 00 000 6777777777743 332 34556677799999997 589999
Q ss_pred HHHHHHcCCCccc-cccChhhhh-----cCCCCCh--hHHHHHHHHHHhcCceeecCcE-Ee-ccCCCC-c--cccccEE
Q 040211 225 LYNAVENGLTAEQ-QNAHPRVAD-----RIPSVLE--NVCDQIRLWESDLNRVEMTPAH-YY-DEFPSR-E--DSKKMRL 291 (310)
Q Consensus 225 v~~Al~~GITA~Q-~hAHp~m~~-----~~p~iP~--tV~DQIrLWE~Er~Rl~~~~g~-ly-~~f~s~-~--~~~kr~~ 291 (310)
+++|.+.|..-== -+..|.+.+ ..|.+|= |..+=...|+.=.+-+++.|+- +. -+|.+. . -+.-++|
T Consensus 79 ~~~a~~aGa~FivSP~~~~~v~~~a~~~~i~~iPGv~TpsEi~~A~~~G~~~vK~FPA~~~gG~~~lkal~~p~p~~~~~ 158 (212)
T d1vhca_ 79 VVLAKSSGADFVVTPGLNPKIVKLCQDLNFPITPGVNNPMAIEIALEMGISAVKFFPAEASGGVKMIKALLGPYAQLQIM 158 (212)
T ss_dssp HHHHHHHTCSEEECSSCCHHHHHHHHHTTCCEECEECSHHHHHHHHHTTCCEEEETTTTTTTHHHHHHHHHTTTTTCEEE
T ss_pred HHHHHhhCCcEEECCCCCHHHHHHHHhcCCCccCCcCCHHHHHHHHHCCCCEEEEccccccchHHHHHHHhccccCCeEE
Confidence 9999999964332 344444432 3588884 8888888999999999999963 32 122222 1 2334455
Q ss_pred EEecccchHHHHHHHh
Q 040211 292 VVNAEIHMHMREFLRG 307 (310)
Q Consensus 292 ~V~~~~h~~vr~f~k~ 307 (310)
.+..=.-+++++|++.
T Consensus 159 ptGGV~~~N~~~yl~~ 174 (212)
T d1vhca_ 159 PTGGIGLHNIRDYLAI 174 (212)
T ss_dssp EBSSCCTTTHHHHHTS
T ss_pred ecCCCCHHHHHHHHhC
Confidence 5444455678888753
No 13
>d1pbja3 d.37.1.1 (A:2-121) Hypothetical protein MTH1622 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}
Probab=26.33 E-value=9.8 Score=27.52 Aligned_cols=38 Identities=13% Similarity=0.228 Sum_probs=26.7
Q ss_pred ceEEEEeCHHHHHHHHHcCCCccccccChhhhhcCCCC
Q 040211 214 NLIVGAITKESLYNAVENGLTAEQQNAHPRVADRIPSV 251 (310)
Q Consensus 214 Nlvvg~iTReSv~~Al~~GITA~Q~hAHp~m~~~~p~i 251 (310)
|=.+|+||+..+.+++..|.......+..-|.+..+.+
T Consensus 40 ~~~~Gvit~~Di~~~l~~~~~~~~~~v~~~m~~~~~~v 77 (120)
T d1pbja3 40 GVRVGIVTTWDVLEAIAEGDDLAEVKVWEVMERDLVTI 77 (120)
T ss_dssp TEEEEEEEHHHHHHHHHHTCCTTTSBHHHHCBCGGGEE
T ss_pred CcEEEEEEeeeccccccccccccceeEeeecccccccc
Confidence 56779999999999999987666644444454443333
No 14
>d1p6ra_ a.4.5.39 (A:) Penicillinase repressor BlaI {Bacillus licheniformis [TaxId: 1402]}
Probab=25.04 E-value=29 Score=24.19 Aligned_cols=31 Identities=13% Similarity=0.270 Sum_probs=23.7
Q ss_pred HHHHHHHHHHhhcCeeeEeeCCCcceeecCC
Q 040211 149 EIQRSMIKDFADLGLVKLQQGRKESWFIPTI 179 (310)
Q Consensus 149 ~~q~~~L~~L~~lGLVy~~~~~~~~fyipT~ 179 (310)
.+-+++|..|.+-|+|-..+.....+|-|+-
T Consensus 42 tTv~T~L~rL~~KG~l~~~k~gr~~~Y~p~i 72 (82)
T d1p6ra_ 42 KTIQTMLLRLIKKGALNHHKEGRVFVYTPNI 72 (82)
T ss_dssp HHHHHHHHHHHHTTSEEEEEETTEEEEEESC
T ss_pred hHHHHHHHHHHHCCCeEEEecCCeEEEEecC
Confidence 5789999999999999877655555554654
No 15
>d2p8ta1 a.4.5.72 (A:14-82) Hypothetical protein PH0730 {Pyrococcus horikoshii [TaxId: 53953]}
Probab=23.86 E-value=11 Score=26.41 Aligned_cols=29 Identities=14% Similarity=0.148 Sum_probs=23.2
Q ss_pred hHHHHHHhCCCcccCCCCCccccccchhc
Q 040211 62 STMKVFQRGLLIQRDKEAPRLTESGFQFL 90 (310)
Q Consensus 62 ~v~~lL~~~~L~~~~~~~~~IT~~GFqFL 90 (310)
...+.|+.-||++....+..+|++|-.||
T Consensus 36 te~~~Lk~~gLI~~~~~Gm~lTe~G~~~l 64 (69)
T d2p8ta1 36 TLLRKLSHLDIIRSKQRGHFLTLKGKEIR 64 (69)
T ss_dssp HHHHHHHHTTSEEEC--CEEECHHHHHHH
T ss_pred HHHHHHHHCCCeeeeCCCCEECHhHHHHH
Confidence 44678899999998777889999998886
No 16
>d1sfxa_ a.4.5.50 (A:) Hypothetical protein AF2008 {Archaeoglobus fulgidus [TaxId: 2234]}
Probab=23.21 E-value=77 Score=22.37 Aligned_cols=51 Identities=22% Similarity=0.198 Sum_probs=32.4
Q ss_pred hhCCCHH--HHHHHHHHhcccccCccccCCCCC-HHHHHHHHHHhhcCeeeEee
Q 040211 118 ERGINQA--DLISFLLELSFHVAGEAYNLKTLS-EIQRSMIKDFADLGLVKLQQ 168 (310)
Q Consensus 118 ~~g~~~~--e~L~FLf~Ls~~~~g~~Y~~~~lt-~~q~~~L~~L~~lGLVy~~~ 168 (310)
..|.+.. .++..|+..+-++.+.-=..-+++ .+-..+|+.|.+.|||-...
T Consensus 15 ~lGlt~~e~~v~~~L~~~g~~t~~eia~~~~i~~~~v~~~l~~L~~~GlV~r~~ 68 (109)
T d1sfxa_ 15 KLSFKPSDVRIYSLLLERGGMRVSEIARELDLSARFVRDRLKVLLKRGFVRREI 68 (109)
T ss_dssp HTCCCHHHHHHHHHHHHHCCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEE
T ss_pred HcCCCHHHHHHHHHHHhcCCCCHHHHHHHhCCCcchHHHHHHHHHhCCCEEEEe
Confidence 5677664 556666666655544322223344 45578999999999996553
No 17
>d1in4a1 a.4.5.11 (A:255-329) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]}
Probab=22.03 E-value=7.6 Score=27.74 Aligned_cols=31 Identities=13% Similarity=0.196 Sum_probs=24.5
Q ss_pred HHHHHHhCCCcccCCCCCccccccchhcccc
Q 040211 63 TMKVFQRGLLIQRDKEAPRLTESGFQFLLMD 93 (310)
Q Consensus 63 v~~lL~~~~L~~~~~~~~~IT~~GFqFLL~d 93 (310)
+=-.|.+.|++.+...+..+|.+|+++|=.+
T Consensus 43 iEPyLiq~G~i~RTpRGR~~T~~~~~hl~~~ 73 (75)
T d1in4a1 43 YEPYLLQAGFLARTPRGRIVTEKAYKHLKYE 73 (75)
T ss_dssp THHHHHHTTSEEEETTEEEECHHHHHHTTCC
T ss_pred hhHHHHHhhHHhhCCchHHhHHHHHHHcCCC
Confidence 3345788999998777789999999988543
No 18
>d1a9xa1 a.92.1.1 (A:403-555) Carbamoyl phosphate synthetase, large subunit connection domain {Escherichia coli [TaxId: 562]}
Probab=21.66 E-value=29 Score=27.15 Aligned_cols=20 Identities=20% Similarity=0.307 Sum_probs=15.8
Q ss_pred HHHHHHHcCCCccc----cccChh
Q 040211 224 SLYNAVENGLTAEQ----QNAHPR 243 (310)
Q Consensus 224 Sv~~Al~~GITA~Q----~hAHp~ 243 (310)
.|..||++|+|.++ ++-+|-
T Consensus 36 ~i~eAlr~G~sveeI~elTkID~W 59 (153)
T d1a9xa1 36 YIADAFRAGLSVDGVFNLTNIDRW 59 (153)
T ss_dssp HHHHHHHTTBCHHHHHHHHCCCHH
T ss_pred HHHHHHHcCCCHHHHHHhhCeeeH
Confidence 36799999999999 555554
No 19
>d1mska_ d.173.1.1 (A:) Methionine synthase SAM-binding domain {Escherichia coli [TaxId: 562]}
Probab=20.93 E-value=15 Score=32.63 Aligned_cols=57 Identities=11% Similarity=0.154 Sum_probs=46.2
Q ss_pred hhHHHHHHHHHH---hcC-ceeecCcEEeccCCCC-----ccccccEEEEecccchHHHHHHHhcc
Q 040211 253 ENVCDQIRLWES---DLN-RVEMTPAHYYDEFPSR-----EDSKKMRLVVNAEIHMHMREFLRGQN 309 (310)
Q Consensus 253 ~tV~DQIrLWE~---Er~-Rl~~~~g~ly~~f~s~-----~~~~kr~~~V~~~~h~~vr~f~k~~~ 309 (310)
|...+|-.||++ |++ -|+.++++.+.==.|. .+|+.+.|-|..=+.+||.+|-+|+.
T Consensus 243 PDh~ek~~l~~LL~~e~~iGi~LTEs~~m~P~~Svsg~~f~hP~a~YF~vgki~~dq~~dya~rk~ 308 (327)
T d1mska_ 243 PEHTEKATIWELLEVEKHTGMKLTESFAMWPGASVSGWYFSHPDSKYYAVAQIQRDQVEDYARRKG 308 (327)
T ss_dssp CCGGGHHHHHHHTTHHHHHCCEECTTCCEESSSEEEEEEBCCTTCCCCCCCCBCHHHHHHHHHHHT
T ss_pred hhHHHHHHHHHhhchhhcccceEchhhccCccceeeEEEEeCCCceeeccCcccHHHHHHHHHHcC
Confidence 368888889986 664 8999998877533333 88999999999999999999998864
No 20
>d1onfa3 d.87.1.1 (A:377-495) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]}
Probab=20.65 E-value=15 Score=27.07 Aligned_cols=19 Identities=26% Similarity=0.295 Sum_probs=16.4
Q ss_pred HHHHcCCCccc----cccChhhh
Q 040211 227 NAVENGLTAEQ----QNAHPRVA 245 (310)
Q Consensus 227 ~Al~~GITA~Q----~hAHp~m~ 245 (310)
-|+++|+|+++ .|+||.+.
T Consensus 90 ~ai~~~~t~~~l~~~i~~hPT~s 112 (119)
T d1onfa3 90 VALKMNATKKDFDETIPIHPTAA 112 (119)
T ss_dssp HHHHTTCBHHHHHTSCCCTTCST
T ss_pred HHHHcCCcHHHHhhCcccCCCHH
Confidence 59999999999 99999643
No 21
>d1wa3a1 c.1.10.1 (A:2-203) KDPG aldolase {Thermotoga maritima [TaxId: 2336]}
Probab=20.24 E-value=39 Score=27.46 Aligned_cols=97 Identities=11% Similarity=0.112 Sum_probs=62.8
Q ss_pred ccCceEEEE---eCHHHHHHHHHcCCCccc-cccChhhhh-----cCCCCCh--hHHHHHHHHHHhcCceeecCcEEec-
Q 040211 211 QLPNLIVGA---ITKESLYNAVENGLTAEQ-QNAHPRVAD-----RIPSVLE--NVCDQIRLWESDLNRVEMTPAHYYD- 278 (310)
Q Consensus 211 rfPNlvvg~---iTReSv~~Al~~GITA~Q-~hAHp~m~~-----~~p~iP~--tV~DQIrLWE~Er~Rl~~~~g~ly~- 278 (310)
..|++.||. +|++.+++|.+.|-.-== -+.+|.+.+ ..|++|- |..+=..-|+.=.+-+++.|+-.+-
T Consensus 58 ~~~~~~vGaGTV~~~~~~~~a~~aGa~fivsP~~~~~v~~~~~~~~i~~iPGv~TpsEi~~A~~~G~~~lK~fPa~~~G~ 137 (202)
T d1wa3a1 58 KEKGAIIGAGTVTSVEQCRKAVESGAEFIVSPHLDEEISQFCKEKGVFYMPGVMTPTELVKAMKLGHTILKLFPGEVVGP 137 (202)
T ss_dssp HHTTCEEEEESCCSHHHHHHHHHHTCSEEECSSCCHHHHHHHHHHTCEEECEECSHHHHHHHHHTTCCEEEETTHHHHHH
T ss_pred cCCCcEEEecccccHHHHHHHHhhcccEEeCCCCcHHHHHHHHhcCCceeCCcCcHHHHHHHHHCCCCEEEecchhhcCH
Confidence 349999986 999999999999975332 344455432 3577774 7777778899888899988874432
Q ss_pred cCCCC---ccccccEEEEecccchHHHHHHHh
Q 040211 279 EFPSR---EDSKKMRLVVNAEIHMHMREFLRG 307 (310)
Q Consensus 279 ~f~s~---~~~~kr~~~V~~~~h~~vr~f~k~ 307 (310)
.|.+. --+.-+++.+..=.-+++++|++.
T Consensus 138 ~~lk~l~~p~p~i~~iptGGI~~~n~~~~l~a 169 (202)
T d1wa3a1 138 QFVKAMKGPFPNVKFVPTGGVNLDNVCEWFKA 169 (202)
T ss_dssp HHHHHHHTTCTTCEEEEBSSCCTTTHHHHHHH
T ss_pred HHHHHHhCcccCCcEEeeCCCCHHHHHHHHHC
Confidence 11111 123344444333345678888763
Done!