Query 040213
Match_columns 764
No_of_seqs 201 out of 776
Neff 5.0
Searched_HMMs 29240
Date Mon Mar 25 09:35:03 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040213.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/040213hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3gia_A Uncharacterized protein 95.5 0.063 2.2E-06 57.9 11.2 79 202-289 125-207 (444)
2 4djk_A Probable glutamate/gamm 95.2 0.22 7.6E-06 54.7 14.7 98 202-305 130-238 (511)
3 3l1l_A Arginine/agmatine antip 92.7 0.64 2.2E-05 49.9 11.7 81 203-289 126-210 (445)
4 1nrp_R Receptor based peptide 20.9 31 0.0011 23.2 0.9 17 321-337 4-20 (26)
5 3kcp_B Cellulosome anchoring p 20.1 28 0.00094 34.3 0.7 11 250-260 57-67 (187)
6 2bm3_A Type 2 cohesin, scaffol 20.0 28 0.00095 33.9 0.7 11 250-260 45-55 (166)
7 3bkd_A Transmembrane domain of 17.8 31 0.0011 23.6 0.3 15 83-97 8-22 (26)
8 3lbw_A M2 protein; proton chan 17.3 32 0.0011 23.0 0.3 15 83-97 5-19 (23)
9 2ljb_A M2 protein, BM2 protein 15.0 39 0.0014 24.7 0.3 18 83-100 12-29 (35)
10 2rdd_B UPF0092 membrane protei 14.2 2.6E+02 0.0088 20.4 4.6 33 480-512 1-33 (37)
No 1
>3gia_A Uncharacterized protein MJ0609; membrane protein, transporter, cell membrane, membrane, transmembrane, transport protein; HET: D10 BCN; 2.32A {Methanocaldococcus jannaschii} PDB: 3gi9_C* 3gi8_C
Probab=95.47 E-value=0.063 Score=57.95 Aligned_cols=79 Identities=18% Similarity=0.286 Sum_probs=43.5
Q ss_pred hhhhHHHHHHHHHHhhccccccccc---chhhHHHHHHHHHHHHHHHhhcccCcceeEe-cCHHHHHHHHHhcCchhhcc
Q 040213 202 VVLVAVAILVVLFSVQHFGVDKVGW---LFAPIVFVWFLLIGGIGIINIWKYDSSVLKA-FSPVHVYWFFRKGHTWPSLG 277 (764)
Q Consensus 202 Vv~is~~ILv~LF~~Q~~GT~kvg~---~FgPIm~vWF~~l~~~Gi~~I~~~~P~Vl~A-lnP~ya~~f~~~~~g~~~LG 277 (764)
...+++++++++..+.-+|....++ .+..+.++=++.+.+.|+... +|+-+.. ++|.-...+ +..+.
T Consensus 125 ~~~~~~~~~~~~~~in~~g~~~~~~~~~~~~~~~i~~~~~~ii~~~~~~---~~~~~~~~~~~~g~~~~------~~~~~ 195 (444)
T 3gia_A 125 IAITEIGIVAFFTALNFFGSKAVGRAEFFIVLVKLLILGLFIFAGLITI---HPSYVIPDLAPSAVSGM------IFASA 195 (444)
T ss_dssp HHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---CGGGTSCCCSHHHHHHH------HHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc---ChhhcCCCCCCcchHHH------HHHHH
Confidence 3456778888888888889876654 444544444444455555443 3443322 333211111 12333
Q ss_pred ceeeeeccchhh
Q 040213 278 SIILCITGTEAL 289 (764)
Q Consensus 278 ~V~L~iTG~EAL 289 (764)
..+.+.+|-|+.
T Consensus 196 ~~~~a~~G~e~~ 207 (444)
T 3gia_A 196 IFFLSYMGFGVI 207 (444)
T ss_dssp HGGGGGTHHHHH
T ss_pred HHHHHHHhHHHH
Confidence 456788888875
No 2
>4djk_A Probable glutamate/gamma-aminobutyrate antiporter; LEUT, glutamate-GABA antiporter, transport protein; 3.10A {Escherichia coli} PDB: 4dji_A
Probab=95.21 E-value=0.22 Score=54.68 Aligned_cols=98 Identities=18% Similarity=0.156 Sum_probs=53.7
Q ss_pred hhhhHHHHHHHHHHhhcccccccccchhhH----HHHHHHHHHHHHHHhhcccCccee----EecCHHHHHHHHHhc-Cc
Q 040213 202 VVLVAVAILVVLFSVQHFGVDKVGWLFAPI----VFVWFLLIGGIGIINIWKYDSSVL----KAFSPVHVYWFFRKG-HT 272 (764)
Q Consensus 202 Vv~is~~ILv~LF~~Q~~GT~kvg~~FgPI----m~vWF~~l~~~Gi~~I~~~~P~Vl----~AlnP~ya~~f~~~~-~g 272 (764)
...+++++++++..+.-+|....+++..-. +++-++.+.++|+..+...+|.-+ ..+.|.+ .+ .+
T Consensus 130 ~~~~~~~~~~~~~~in~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~ 203 (511)
T 4djk_A 130 KTIAALIILWALALTQFGGTKYTARIAKVGFFAGILLPAFILIALAAIYLHSGAPVAIEMDSKTFFPDF------SKVGT 203 (511)
T ss_dssp HHHHHHHHHHHHHHHHHTCSSSHHHHTHHHHHHTTHHHHHHHHHHHHHHTC------------CCCCCT------TSTTT
T ss_pred HHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccCcccccCCCc------ccchH
Confidence 566788888888899999988777654332 222344555667766554333211 1122211 12 45
Q ss_pred hhhccceeeeeccchhhhccCCCCC--ccceeeeh
Q 040213 273 WPSLGSIILCITGTEALFADVCQFP--VLSIQIAF 305 (764)
Q Consensus 273 ~~~LG~V~L~iTG~EALyADmGHFg--~~~Ir~aw 305 (764)
|..+..++.+.+|-|+.-.=-+-.- +|.|..|=
T Consensus 204 ~~~~~~~~~a~~G~e~~~~~a~E~k~P~k~ip~ai 238 (511)
T 4djk_A 204 LVVFVAFILSYMGVEASATHVNEMSNPGRDYPLAM 238 (511)
T ss_dssp TTTHHHHHHHHTTGGGGTGGGSSSSCCTTTHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHhccCcccchhHHH
Confidence 6667778899999997643333332 34444443
No 3
>3l1l_A Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC, Arg-bound, amino-acid transport, cell inner membrane, cell membrane, membrane; HET: ARG BNG; 3.00A {Escherichia coli} PDB: 3h5m_A* 3h6b_A 3lrb_A 3lrc_A 3ob6_A* 3hqk_A 3ncy_A
Probab=92.68 E-value=0.64 Score=49.95 Aligned_cols=81 Identities=15% Similarity=0.276 Sum_probs=38.1
Q ss_pred hhhHHHHHHHHHHhhcccccccccc---hhhHHHHHHHHHHHHHHHhhcccCccee-EecCHHHHHHHHHhcCchhhccc
Q 040213 203 VLVAVAILVVLFSVQHFGVDKVGWL---FAPIVFVWFLLIGGIGIINIWKYDSSVL-KAFSPVHVYWFFRKGHTWPSLGS 278 (764)
Q Consensus 203 v~is~~ILv~LF~~Q~~GT~kvg~~---FgPIm~vWF~~l~~~Gi~~I~~~~P~Vl-~AlnP~ya~~f~~~~~g~~~LG~ 278 (764)
..+++++++++..+--+|....+++ +.++.++ .+.++.+..+...+|+.+ ..++|.-.-. + ..=+..+..
T Consensus 126 ~~~~~~~~~~~~~in~~g~~~~~~~~~~~~~~~i~---~~~~~~i~~~~~~~~~~~~~~~~~~~~~~-~--~~~~~~~~~ 199 (445)
T 3l1l_A 126 TITCVVVLWIFVLLNIVGPKMITRVQAVATVLALI---PIVGIAVFGWFWFRGETYMAAWNVSGLGT-F--GAIQSTLNV 199 (445)
T ss_dssp HHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHH---HHHHHHHTTSTTCCCCCCCCC--------------HHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHH---HHHHHHHHHHHHhChhhcccccCccCCcc-H--HHHHHHHHH
Confidence 3456667777777888888776665 3443333 223333334444355543 3444431100 0 011223344
Q ss_pred eeeeeccchhh
Q 040213 279 IILCITGTEAL 289 (764)
Q Consensus 279 V~L~iTG~EAL 289 (764)
++.+.+|-|+.
T Consensus 200 ~~~af~G~e~~ 210 (445)
T 3l1l_A 200 TLWSFIGVESA 210 (445)
T ss_dssp HHHTTTTTTHH
T ss_pred HHHHHHhHHHH
Confidence 56677888864
No 4
>1nrp_R Receptor based peptide NR'S; serine proteinase/receptor; 3.00A {Homo sapiens} PDB: 1nrn_R 1nrq_R*
Probab=20.87 E-value=31 Score=23.24 Aligned_cols=17 Identities=18% Similarity=0.679 Sum_probs=14.7
Q ss_pred hhhhccCCccccCccee
Q 040213 321 AAYLMKKPDHVHDVFYR 337 (764)
Q Consensus 321 gA~Ll~~p~~~~npF~~ 337 (764)
-++|++||++.-.||+.
T Consensus 4 rsfllrnpndkyepfwe 20 (26)
T 1nrp_R 4 RSFLLRNPNDKYEPFWE 20 (26)
T ss_pred hhhhhcCCCcccCcccc
Confidence 36899999999999985
No 5
>3kcp_B Cellulosome anchoring protein, cohesin region; dockerin, X-module, carbohydrate metabolism, cell WALL biogenesis/degradation; 1.94A {Clostridium thermocellum atcc 27405} SCOP: b.2.2.2 PDB: 3p0d_B 2b59_A 4fl4_B
Probab=20.09 E-value=28 Score=34.35 Aligned_cols=11 Identities=55% Similarity=0.896 Sum_probs=4.4
Q ss_pred cCcceeEecCH
Q 040213 250 YDSSVLKAFSP 260 (764)
Q Consensus 250 ~~P~Vl~AlnP 260 (764)
|||+||+|+||
T Consensus 57 YDP~VLqaV~p 67 (187)
T 3kcp_B 57 YDPKVLMAVDP 67 (187)
T ss_dssp CCTTTEEEECT
T ss_pred EChhHeeeccc
Confidence 33444444433
No 6
>2bm3_A Type 2 cohesin, scaffolding dockerin binding protein A; cellulosome, nuclear protein; 1.8A {Clostridium thermocellum} SCOP: b.2.2.2
Probab=20.04 E-value=28 Score=33.87 Aligned_cols=11 Identities=55% Similarity=0.896 Sum_probs=5.1
Q ss_pred cCcceeEecCH
Q 040213 250 YDSSVLKAFSP 260 (764)
Q Consensus 250 ~~P~Vl~AlnP 260 (764)
|||+||+|+||
T Consensus 45 YDP~VLqaVn~ 55 (166)
T 2bm3_A 45 YDPKVLMAVDP 55 (166)
T ss_dssp CCTTTEEEECT
T ss_pred ECccceEeecC
Confidence 44444444444
No 7
>3bkd_A Transmembrane domain of matrix protein M2; proton channel, M2TM, influenza A virus M2 protein, viral PR membrane protein; HET: MSE BOG; 2.05A {Synthetic} SCOP: j.35.1.1 PDB: 1mp6_A 1nyj_A 2kqt_A* 2kad_A* 3c9j_A*
Probab=17.78 E-value=31 Score=23.64 Aligned_cols=15 Identities=27% Similarity=0.625 Sum_probs=13.1
Q ss_pred ccceehhhHHHHHHH
Q 040213 83 TEDVIDALSLIIYTL 97 (764)
Q Consensus 83 ~~~vlGvlSLIfWtL 97 (764)
.++|+|+|-||.|-|
T Consensus 8 aa~iiGilHLiLwIl 22 (26)
T 3bkd_A 8 AASIMGILHLILWIL 22 (26)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 468999999999976
No 8
>3lbw_A M2 protein; proton channel, M2TM, HOST CEL membrane, hydrogen ION transport, ionic channel, transmembr virion, transport protein; HET: XYL; 1.65A {Influenza a virus}
Probab=17.30 E-value=32 Score=22.99 Aligned_cols=15 Identities=33% Similarity=0.649 Sum_probs=12.8
Q ss_pred ccceehhhHHHHHHH
Q 040213 83 TEDVIDALSLIIYTL 97 (764)
Q Consensus 83 ~~~vlGvlSLIfWtL 97 (764)
.++|+|++-||.|-+
T Consensus 5 aa~iigIlHLiLwIl 19 (23)
T 3lbw_A 5 AASIIAILHLILWIL 19 (26)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHH
Confidence 357899999999976
No 9
>2ljb_A M2 protein, BM2 protein chimera; M2 channel, transport protein; NMR {Influenza a virus} PDB: 2ljc_A*
Probab=14.97 E-value=39 Score=24.73 Aligned_cols=18 Identities=22% Similarity=0.471 Sum_probs=14.8
Q ss_pred ccceehhhHHHHHHHHHh
Q 040213 83 TEDVIDALSLIIYTLTII 100 (764)
Q Consensus 83 ~~~vlGvlSLIfWtL~li 100 (764)
..+|+|+|=||.|.+-=.
T Consensus 12 aA~IigiLHlilWildrL 29 (35)
T 2ljb_A 12 AASIIGILHFIAWTIGHL 29 (35)
T ss_dssp HHHHHHHHHHHHHHHHTH
T ss_pred HHHHHHHHHHHHHHhhhh
Confidence 468999999999997533
No 10
>2rdd_B UPF0092 membrane protein YAJC; drug resistance, multidrug efflux, transporter, antiporter, novel transmembrane helix, ACRB, inner membrane; HET: AIC; 3.50A {Escherichia coli}
Probab=14.22 E-value=2.6e+02 Score=20.37 Aligned_cols=33 Identities=6% Similarity=0.032 Sum_probs=0.0
Q ss_pred CchHHHHHHHHHHHHHHHHhhhHHHHHHHHHhc
Q 040213 480 GGWVPLVIAAAFFISMSVWHYGTMKRHQFELQS 512 (764)
Q Consensus 480 GGW~pl~ia~~~~~iM~tW~~G~~~~~~~~~~~ 512 (764)
|||..++.-++++.+|+..-.-.+++.+.+.++
T Consensus 1 ~~~~~~l~~v~~~~ifYFl~iRPQ~Kr~K~~~~ 33 (37)
T 2rdd_B 1 SPMSLILMLVVFGLIFYFMILRPQQKRTKEHKK 33 (37)
T ss_dssp CCCHHHHHHHHHHHHHHHHTHHHHHHHHHHHTT
T ss_pred CcHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Done!