Query 040213
Match_columns 764
No_of_seqs 201 out of 776
Neff 5.0
Searched_HMMs 13730
Date Mon Mar 25 09:35:18 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040213.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/040213hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2yvxa3 f.57.1.1 (A:276-448) M 20.4 25 0.0018 32.1 2.8 120 311-443 12-133 (173)
2 d2e74h1 f.23.27.1 (H:3-29) Pet 13.3 64 0.0047 20.4 2.5 20 481-500 5-24 (27)
3 d1jb0i_ f.23.17.1 (I:) Subunit 9.3 12 0.0009 26.0 -2.1 20 395-414 13-32 (38)
4 d2h8pc1 f.14.1.1 (C:22-78) Pot 9.0 52 0.0038 24.7 1.2 41 310-352 14-54 (57)
5 d3cx5d2 f.23.11.1 (D:261-307) 7.0 1.7E+02 0.013 21.1 3.3 22 433-454 14-36 (47)
6 d2a65a1 f.54.1.1 (A:5-513) Na( 6.8 3.9E+02 0.029 26.8 7.5 52 456-508 377-431 (509)
7 d1iwpg_ a.23.2.1 (G:) Diol deh 6.4 16 0.0011 32.4 -3.4 24 735-758 64-87 (138)
8 d1dx5i1 g.3.11.1 (I:345-387) T 5.8 58 0.0042 23.2 -0.0 27 582-611 14-40 (43)
9 d1krha2 c.25.1.2 (A:206-338) B 5.6 2.2E+02 0.016 23.1 3.7 41 363-403 17-57 (133)
10 d2bnma1 a.35.1.3 (A:6-76) Hydr 5.6 70 0.0051 24.2 0.4 12 115-126 40-51 (71)
No 1
>d2yvxa3 f.57.1.1 (A:276-448) Mg2+ transporter MgtE {Thermus thermophilus [TaxId: 274]}
Probab=20.42 E-value=25 Score=32.07 Aligned_cols=120 Identities=11% Similarity=0.165 Sum_probs=71.7
Q ss_pred HHHHHhhccc--hhhhccCCccccCcceecccCcchHHHHHHHHHHHHHHHhHHhhhhhhHHHHHHHcCCCCceeEEecC
Q 040213 311 PCLLLAYIGQ--AAYLMKKPDHVHDVFYRSIPDIIYWPVFVVATAAAVVASQATISATFSLIKQAVALGCFPRVKVMHTS 388 (764)
Q Consensus 311 P~L~l~Y~GQ--gA~Ll~~p~~~~npF~~~~P~~~~~P~~vlAtlAtIIASQA~Isg~FSi~~Qai~Lg~~Pr~~i~hTS 388 (764)
|-|++|.+|+ .|+++.+=|+.-+-+-. =..+.|+ ++-.+.-.+||+.. ++-+++++|..-+-+ .-
T Consensus 12 pWL~i~l~~~~~~a~ii~~Fe~~l~~~~~---La~fiPl--i~~~gGN~G~Qs~t-----i~iR~La~g~i~~~~---~~ 78 (173)
T d2yvxa3 12 RWLVILILTGMVTSSILQGFESVLEAVTA---LAFYVPV--LLGTGGNTGNQSAT-----LIIRALATRDLDLRD---WR 78 (173)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCTTTTTTTS---CCCCSHH--HHHHHHHHHHHHHH-----HHHHHHHTTCSCSSS---HH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHH--HhcCCchHHHHHHH-----HHHHHHhcccccchh---HH
Confidence 4555555555 45666544432221111 1356666 67788888999874 888999999643211 11
Q ss_pred CCcCCcccchhhHHHHHHHhheeEEeecCchhhhhhhhchhhhHHHHHHHHHHHH
Q 040213 389 KKYSSHIYIPEINWILMILCVAVTAGFKNQHQIGNACGFAVVIVMLVTTLIMILI 443 (764)
Q Consensus 389 ~~~~GQIYIP~vNw~Lmi~~i~vv~~F~~s~~l~~AYGiAV~~~M~iTT~L~~~v 443 (764)
+...-++.+-.+|=+.+...+.....+++...++.+=|++...+|++.+++=.++
T Consensus 79 ~~l~kE~~vgll~G~~l~~i~~~~~~~~~~~~l~~vi~~sl~~~~~ia~~~G~~l 133 (173)
T d2yvxa3 79 RVFLKEMGVGLLLGLTLSFLLVGKVYWDGHPLLLPVVGVSLVLIVFFANLVGAML 133 (173)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCSSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2223457778888776666655555566666666666666666666666654443
No 2
>d2e74h1 f.23.27.1 (H:3-29) PetN subunit of the cytochrome b6f complex {Mastigocladus laminosus [TaxId: 83541]}
Probab=13.26 E-value=64 Score=20.43 Aligned_cols=20 Identities=40% Similarity=0.923 Sum_probs=15.0
Q ss_pred chHHHHHHHHHHHHHHHHhh
Q 040213 481 GWVPLVIAAAFFISMSVWHY 500 (764)
Q Consensus 481 GW~pl~ia~~~~~iM~tW~~ 500 (764)
||+.++.-..-..-|..|-+
T Consensus 5 gwv~llvvftwsiamvvwgr 24 (27)
T d2e74h1 5 GWVALLVVFTWSIAMVVWGR 24 (27)
T ss_dssp HHHHHHHHHHHHHHHHHHHT
T ss_pred hHhHHHHHhhheeeeEEEcc
Confidence 78888877777777887754
No 3
>d1jb0i_ f.23.17.1 (I:) Subunit VIII of photosystem I reaction centre, PsaI {Synechococcus elongatus [TaxId: 32046]}
Probab=9.34 E-value=12 Score=26.02 Aligned_cols=20 Identities=20% Similarity=0.577 Sum_probs=15.1
Q ss_pred ccchhhHHHHHHHhheeEEe
Q 040213 395 IYIPEINWILMILCVAVTAG 414 (764)
Q Consensus 395 IYIP~vNw~Lmi~~i~vv~~ 414 (764)
|.||.+-|++-+.++.+...
T Consensus 13 I~iPvv~wl~p~vvMglLFi 32 (38)
T d1jb0i_ 13 IFIPVVCWLMPTVVMGLLFL 32 (38)
T ss_dssp HHHHHHHTHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHhe
Confidence 78999999988776655443
No 4
>d2h8pc1 f.14.1.1 (C:22-78) Potassium channel protein {Streptomyces coelicolor [TaxId: 1902]}
Probab=8.98 E-value=52 Score=24.72 Aligned_cols=41 Identities=15% Similarity=0.202 Sum_probs=26.2
Q ss_pred hHHHHHhhccchhhhccCCccccCcceecccCcchHHHHHHHH
Q 040213 310 YPCLLLAYIGQAAYLMKKPDHVHDVFYRSIPDIIYWPVFVVAT 352 (764)
Q Consensus 310 ~P~L~l~Y~GQgA~Ll~~p~~~~npF~~~~P~~~~~P~~vlAt 352 (764)
+-++++--++=+.|+.++... |.-|.++|+.++|-.+-+.|
T Consensus 14 ~~~i~i~~~s~~~y~~E~~~~--~~~f~sip~a~WWaivT~TT 54 (57)
T d2h8pc1 14 LLVIVLLAGSYLAVLAERGAP--GAQLITYPRALWWACETATT 54 (57)
T ss_dssp HHHHHHHHHHHHHHHHHTTST--TCCCCSHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHhcCCC--Cccccccchhhhhheeeeec
Confidence 334444445556677766543 33499999999997765544
No 5
>d3cx5d2 f.23.11.1 (D:261-307) Cytochrome c1 subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase), transmembrane anchor {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=7.00 E-value=1.7e+02 Score=21.06 Aligned_cols=22 Identities=9% Similarity=0.245 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHH-HHHHhhhhHH
Q 040213 433 MLVTTLIMILIM-LLVWRCHWIL 454 (764)
Q Consensus 433 M~iTT~L~~~v~-~~~w~~~~~~ 454 (764)
|++.++|+.+.. ...|+|+.++
T Consensus 14 ~~i~s~l~~~~~y~KR~kWs~lK 36 (47)
T d3cx5d2 14 VIILSSLYLLSIWVKKFKWAGIK 36 (47)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhccccc
Confidence 445555544433 4567776554
No 6
>d2a65a1 f.54.1.1 (A:5-513) Na(+):neurotransmitter symporter homologue LeuT {Aquifex aeolicus [TaxId: 63363]}
Probab=6.77 E-value=3.9e+02 Score=26.76 Aligned_cols=52 Identities=12% Similarity=0.132 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHHHHHHHhhhcccc---CchHHHHHHHHHHHHHHHHhhhHHHHHHH
Q 040213 456 LIFTVLSLLVEGTYFSAMIFKIHR---GGWVPLVIAAAFFISMSVWHYGTMKRHQF 508 (764)
Q Consensus 456 ~~~~~~f~~id~~f~sanl~Ki~~---GGW~pl~ia~~~~~iM~tW~~G~~~~~~~ 508 (764)
+..+++++..=..+++.+.....| ++ +.+.+.+++-++...|.||.++..+.
T Consensus 377 ~~~~~~~~~~~~~~~~~~~~~~~D~~~~~-~~l~~~~l~e~i~v~w~yg~~r~~~d 431 (509)
T d2a65a1 377 WTAAIVFFSAHLVMFLNKSLDEMDFWAGT-IGVVFFGLTELIIFFWIFGADKAWEE 431 (509)
T ss_dssp HHHHHHHHHHHHHHHBTTHHHHHHHHTTT-HHHHHHHHHHHHHHHTTSCHHHHHHH
T ss_pred heeEEEEhhhhHHHHhcchHHHHHHHHHH-HHHHHHHHHHHheeeeEecHHHHHHH
Confidence 334444555545555554444333 33 56667788888999999999887664
No 7
>d1iwpg_ a.23.2.1 (G:) Diol dehydratase, gamma subunit {Klebsiella pneumoniae [TaxId: 573]}
Probab=6.44 E-value=16 Score=32.42 Aligned_cols=24 Identities=17% Similarity=0.293 Sum_probs=21.2
Q ss_pred HHHhhhccccccccccCCCCeEEe
Q 040213 735 TFLRKICRENNAIFYCPRECLLNV 758 (764)
Q Consensus 735 ~FLrrN~R~~~~~l~IP~~rvVEV 758 (764)
..|.+|.|++.+.-.||-+||+|+
T Consensus 64 ~~la~Nf~RAAELt~vPD~rvLei 87 (138)
T d1iwpg_ 64 HAVARNFRRAAELIAIPDERILAI 87 (138)
T ss_dssp HHHHHHHHHHHTTTTSCHHHHHHH
T ss_pred HHHHHHHHHHHhcccCChHHHHHH
Confidence 457889999999999999999885
No 8
>d1dx5i1 g.3.11.1 (I:345-387) Thrombomodulin, different EGF-like domains {Human (Homo sapiens) [TaxId: 9606]}
Probab=5.81 E-value=58 Score=23.16 Aligned_cols=27 Identities=7% Similarity=0.342 Sum_probs=0.0
Q ss_pred EEEEEeCCCCCCEEEEEEEeeeccCCCCch
Q 040213 582 FLVTRVGPKSFHMFHCAARYGYKDLHKRDD 611 (764)
Q Consensus 582 ~~v~~l~~~~~g~yRv~vrYGYmE~~~ip~ 611 (764)
+..+++++ +=|||+-+-||+-.|+.|.
T Consensus 14 ~qCqP~~~---~~Y~CiCaeGFaP~p~~Ph 40 (43)
T d1dx5i1 14 YQCQPLDQ---TSYLCVCAEGFAPIPHEPH 40 (43)
T ss_dssp SEEEECSS---SCEEEECCTTEEEETTEEE
T ss_pred eeeeeCCC---CcceEEeccccccCCCCcc
No 9
>d1krha2 c.25.1.2 (A:206-338) Benzoate dioxygenase reductase {Acinetobacter sp. [TaxId: 472]}
Probab=5.61 E-value=2.2e+02 Score=23.06 Aligned_cols=41 Identities=10% Similarity=0.183 Sum_probs=0.0
Q ss_pred hhhhhhHHHHHHHcCCCCceeEEecCCCcCCcccchhhHHH
Q 040213 363 ISATFSLIKQAVALGCFPRVKVMHTSKKYSSHIYIPEINWI 403 (764)
Q Consensus 363 Isg~FSi~~Qai~Lg~~Pr~~i~hTS~~~~GQIYIP~vNw~ 403 (764)
|+-..|+++++.+.+.-+++.++|..+...--+|--++..+
T Consensus 17 ItP~~s~l~~~~~~~~~~~i~l~~~~r~~~d~~~~~el~~l 57 (133)
T d1krha2 17 IAPFLSMLQVLEQKGSEHPVRLVFGVTQDCDLVALEQLDAL 57 (133)
T ss_dssp HHHHHHHHHHHHHHCCSSCEEEEEEESSGGGCCCHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCCceEEEEeecchhHHHHHHHHHHH
No 10
>d2bnma1 a.35.1.3 (A:6-76) Hydroxypropylphosphonic acid epoxidase Fom4, N-terminal domain {Streptomyces wedmorensis [TaxId: 43759]}
Probab=5.59 E-value=70 Score=24.20 Aligned_cols=12 Identities=50% Similarity=0.947 Sum_probs=0.0
Q ss_pred CCCchHHHHHHH
Q 040213 115 NGQGGTFALYSL 126 (764)
Q Consensus 115 ~GEGG~~AL~sL 126 (764)
|||||-+.|..|
T Consensus 40 ngeggeltltql 51 (71)
T d2bnma1 40 NGEGGELTLTQL 51 (71)
T ss_dssp TTTCTTCBHHHH
T ss_pred cCCCceeeHHHH
Done!