BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 040215
(123 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9M4B5|PFD4_ARATH Probable prefoldin subunit 4 OS=Arabidopsis thaliana GN=AIP3 PE=1
SV=3
Length = 129
Score = 179 bits (453), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 86/120 (71%), Positives = 104/120 (86%)
Query: 4 SDTVVTWEDQQNINKFSKLNNRFHELEDEIKFAKETNDNLEDAGNELILTDEDIVRFQIG 63
S+ VTWEDQQNIN FS+LNNR H+L+D+IK AKE +NLEDAGNELIL DE++VRFQIG
Sbjct: 10 SEMEVTWEDQQNINIFSRLNNRVHDLDDDIKSAKEKCENLEDAGNELILADEEMVRFQIG 69
Query: 64 EVFAHVPREEVEIRIEEMKEVNSKTLEKLEKEKETVLAQMNELKKILYGKFRDSINLEED 123
EVFAHVPR++VE +IEEMKE K+LEKLE+EKE+++ QM LKK+LY KF+DSINLEED
Sbjct: 70 EVFAHVPRDDVETKIEEMKEATCKSLEKLEQEKESIVTQMAALKKVLYAKFKDSINLEED 129
>sp|Q9M4C4|PFD4_AVEFA Probable prefoldin subunit 4 OS=Avena fatua GN=VIP3 PE=2 SV=1
Length = 126
Score = 171 bits (432), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 88/123 (71%), Positives = 108/123 (87%)
Query: 1 AEKSDTVVTWEDQQNINKFSKLNNRFHELEDEIKFAKETNDNLEDAGNELILTDEDIVRF 60
+ ++ VTWEDQQNIN+F +LNNRFHEL DEI+ AKE N+NLEDAGNELIL DED+VRF
Sbjct: 4 GDGTEAQVTWEDQQNINRFGRLNNRFHELTDEIRLAKEANENLEDAGNELILCDEDVVRF 63
Query: 61 QIGEVFAHVPREEVEIRIEEMKEVNSKTLEKLEKEKETVLAQMNELKKILYGKFRDSINL 120
QIGEVFAH+P ++VE R+E+MKE +K LE+LE+EKE++LAQM ELKKILYGKF+D+INL
Sbjct: 64 QIGEVFAHMPMDDVEARLEQMKEDAAKKLERLEEEKESILAQMAELKKILYGKFKDAINL 123
Query: 121 EED 123
EED
Sbjct: 124 EED 126
>sp|Q9NQP4|PFD4_HUMAN Prefoldin subunit 4 OS=Homo sapiens GN=PFDN4 PE=1 SV=1
Length = 134
Score = 81.6 bits (200), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 49/121 (40%), Positives = 78/121 (64%), Gaps = 2/121 (1%)
Query: 5 DTVVTWEDQQNINKFSKLNNRFHELEDEIKFAKETNDNLEDAGNELILTDED--IVRFQI 62
D VT+EDQQ INKF++ +R EL++EI+ K+ NLEDA ++++L D+D ++ +QI
Sbjct: 12 DVNVTFEDQQKINKFARNTSRITELKEEIEVKKKQLQNLEDACDDIMLADDDCLMIPYQI 71
Query: 63 GEVFAHVPREEVEIRIEEMKEVNSKTLEKLEKEKETVLAQMNELKKILYGKFRDSINLEE 122
G+VF +EE + +EE K+ + ++ LE E++ + +LK LY KF +INLE
Sbjct: 72 GDVFISHSQEETQEMLEEAKKNLQEEIDALESRVESIQRVLADLKVQLYAKFGSNINLEA 131
Query: 123 D 123
D
Sbjct: 132 D 132
>sp|Q2TBR6|PFD4_BOVIN Prefoldin subunit 4 OS=Bos taurus GN=PFDN4 PE=2 SV=1
Length = 134
Score = 80.5 bits (197), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 49/121 (40%), Positives = 77/121 (63%), Gaps = 2/121 (1%)
Query: 5 DTVVTWEDQQNINKFSKLNNRFHELEDEIKFAKETNDNLEDAGNELILTDED--IVRFQI 62
D VT+EDQQ INKF++ +R EL++EI+ K+ NLEDA +++L D+D ++ +QI
Sbjct: 12 DVNVTFEDQQKINKFARNTSRITELKEEIEVKKKQLQNLEDACEDIMLADDDCLMIPYQI 71
Query: 63 GEVFAHVPREEVEIRIEEMKEVNSKTLEKLEKEKETVLAQMNELKKILYGKFRDSINLEE 122
G+VF +EE + +EE K+ + ++ LE E++ + +LK LY KF +INLE
Sbjct: 72 GDVFISHSQEETQEMLEEAKKNLQEEIDALESRVESIQRVLADLKVQLYAKFGSNINLEA 131
Query: 123 D 123
D
Sbjct: 132 D 132
>sp|P53900|PFD4_YEAST Prefoldin subunit 4 OS=Saccharomyces cerevisiae (strain ATCC 204508
/ S288c) GN=GIM3 PE=1 SV=1
Length = 129
Score = 73.2 bits (178), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 44/122 (36%), Positives = 77/122 (63%), Gaps = 1/122 (0%)
Query: 1 AEKSDTVVTWEDQQNINKFSKLNNRFHELEDEIKFAKETNDNLEDAGNELILTDED-IVR 59
++++T VT+EDQQ IN+FSKL R + E+ +E + L+D E+ L DED V+
Sbjct: 7 GQRNNTQVTFEDQQKINEFSKLIMRKDAIAQELSLQREEKEYLDDVSLEIELIDEDEPVQ 66
Query: 60 FQIGEVFAHVPREEVEIRIEEMKEVNSKTLEKLEKEKETVLAQMNELKKILYGKFRDSIN 119
+++G++F + + +V ++E+ E +E LE ++ + ++++ LK ILY KF D+IN
Sbjct: 67 YKVGDLFIFMKQSKVTAQLEKDAERLDNKIETLEDKQRDIDSRLDALKAILYAKFGDNIN 126
Query: 120 LE 121
LE
Sbjct: 127 LE 128
>sp|Q54TB7|PFD4_DICDI Probable prefoldin subunit 4 OS=Dictyostelium discoideum GN=pfdn4
PE=3 SV=1
Length = 132
Score = 65.9 bits (159), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 48/125 (38%), Positives = 71/125 (56%), Gaps = 15/125 (12%)
Query: 6 TVVTWEDQQNINKFSKLNNRFHELEDEIKFAKETNDNLEDAGNELILTDEDI-VRFQIGE 64
T V DQ+ IN F +LNNR HEL E K +E + D+ ++L + D+D ++ +GE
Sbjct: 15 TEVCAADQKMINLFGRLNNRKHELMREKKAKQEDLEKATDSQDDLFIADDDSKFKYSMGE 74
Query: 65 VFAHVPREEVEIRIEEMKEVNSKTLEKLEKEKETVLAQMN-------ELKKILYGKFRDS 117
F V +E+ E IE K + KLE++ + + + +N ELK ILY KF++S
Sbjct: 75 AFLEVNKEDAESLIE-------KYINKLEEDIKKIDSDINDINEKHKELKVILYAKFKNS 127
Query: 118 INLEE 122
INLEE
Sbjct: 128 INLEE 132
>sp|Q17435|PFD4_CAEEL Probable prefoldin subunit 4 OS=Caenorhabditis elegans GN=pfd-4
PE=2 SV=1
Length = 126
Score = 64.3 bits (155), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 42/119 (35%), Positives = 66/119 (55%), Gaps = 3/119 (2%)
Query: 6 TVVTWEDQQNINKFSKLNNRFHELEDEIKFAKETNDNLEDAGNE-LILTDEDI--VRFQI 62
T V+ EDQ +NKF++ +L+ ++K AK DN+ +A +E L+L DED + +I
Sbjct: 5 TKVSAEDQALLNKFARSYQTQTQLKADVKEAKTLIDNINEASDEILLLDDEDSASIPCRI 64
Query: 63 GEVFAHVPREEVEIRIEEMKEVNSKTLEKLEKEKETVLAQMNELKKILYGKFRDSINLE 121
G F H + + +E K K L + E + + A M ++KK+LY KF D INL+
Sbjct: 65 GSCFVHFNGDSLNEHLEGKKTTAEKVLSEKTSELDAISADMEQIKKVLYAKFGDQINLD 123
>sp|A8X0Z1|PFD4_CAEBR Probable prefoldin subunit 4 OS=Caenorhabditis briggsae GN=pfd-4
PE=3 SV=1
Length = 126
Score = 62.4 bits (150), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 42/117 (35%), Positives = 64/117 (54%), Gaps = 3/117 (2%)
Query: 8 VTWEDQQNINKFSKLNNRFHELEDEIKFAKETNDNLEDAGNE-LILTDEDI--VRFQIGE 64
V+ EDQ +NKF++ +L+ E K K +N+ +A +E L+L DED + +IG
Sbjct: 7 VSAEDQALLNKFARSYQLQTQLKAECKEMKTLVENINEATDEVLLLDDEDSASIPCRIGS 66
Query: 65 VFAHVPREEVEIRIEEMKEVNSKTLEKLEKEKETVLAQMNELKKILYGKFRDSINLE 121
F H + + +E K L + E ET+ A+M +KK+LYGKF D INL+
Sbjct: 67 CFVHFNSDSLNEHLEAKKASTETVLAEKTNELETITAEMERIKKVLYGKFGDQINLD 123
>sp|Q9VRL3|PFD4_DROME Probable prefoldin subunit 4 OS=Drosophila melanogaster GN=CG10635
PE=3 SV=1
Length = 138
Score = 52.4 bits (124), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 42/118 (35%), Positives = 71/118 (60%), Gaps = 1/118 (0%)
Query: 5 DTVVTWEDQQNINKFSKLNNRFHELEDEIKFAKETNDNLEDAGNELILTDED-IVRFQIG 63
D +++EDQQ IN+F+K N R + + E++ + +LE+A E+ L DED + F +G
Sbjct: 18 DVHISFEDQQRINRFAKHNARMDDFKAELETKRNELKSLEEALEEIELFDEDEDIPFLVG 77
Query: 64 EVFAHVPREEVEIRIEEMKEVNSKTLEKLEKEKETVLAQMNELKKILYGKFRDSINLE 121
EVF E+ + ++E KE K + +E + + + A+M+ELK LY +F +I+LE
Sbjct: 78 EVFLSHKLEKTQDMLKETKEQVLKEIAGVEAKAKVIKAEMDELKAHLYQRFGSNISLE 135
>sp|Q9UTD4|PFD4_SCHPO Probable prefoldin subunit 4 OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=SPAC227.05 PE=3 SV=1
Length = 123
Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 42/118 (35%), Positives = 65/118 (55%), Gaps = 4/118 (3%)
Query: 8 VTWEDQQNINKFSKLNNRFHELEDEIKFAKETNDNLEDAGNELILTDED----IVRFQIG 63
V EDQ+N+N+FS L++R E +IK K +++ DA NE L DED I ++G
Sbjct: 6 VLAEDQRNLNEFSVLHSRKAIQELDIKNLKTQIEDIVDAKNECELLDEDDGDDIPALKVG 65
Query: 64 EVFAHVPREEVEIRIEEMKEVNSKTLEKLEKEKETVLAQMNELKKILYGKFRDSINLE 121
+ F V + ++E+ +E K ++ L E ++ ELK +LY KF D INL+
Sbjct: 66 DAFFQVSLPVLLDQLEQSEESLEKQVDVLRSSMEKDETRIQELKSMLYSKFHDQINLD 123
>sp|P18769|FRZE_MYXXA Gliding motility regulatory protein OS=Myxococcus xanthus GN=frzE
PE=1 SV=1
Length = 777
Score = 30.8 bits (68), Expect = 2.6, Method: Composition-based stats.
Identities = 15/50 (30%), Positives = 27/50 (54%)
Query: 11 EDQQNINKFSKLNNRFHELEDEIKFAKETNDNLEDAGNELILTDEDIVRF 60
E + +FS+L +RF L +EI + E + L+ ++L + +D RF
Sbjct: 247 ETEALFERFSRLGDRFLRLAEEIDISNEVREQLDRVESDLHMLRDDAFRF 296
>sp|Q8R313|EXOC6_MOUSE Exocyst complex component 6 OS=Mus musculus GN=Exoc6 PE=1 SV=2
Length = 802
Score = 30.8 bits (68), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 43/77 (55%), Gaps = 2/77 (2%)
Query: 38 ETNDNLEDAGNELILTDEDIVRFQIGEVFAHVPREEVEIRIEEMKEVNSKTLEKLE-KEK 96
+TN +DAG E+I+ EDI+R +I + E++++ + + E+ SK E++ K
Sbjct: 94 DTNRRFQDAGKEVIIQTEDIIRCRIQQRNITTVVEKLQLCLPVL-EMYSKLKEQMSMKRY 152
Query: 97 ETVLAQMNELKKILYGK 113
+ L M +L+ + + +
Sbjct: 153 YSALKTMEQLENVYFPR 169
>sp|Q3AUA7|ATPA_CHLCH ATP synthase subunit alpha OS=Chlorobium chlorochromatii (strain
CaD3) GN=atpA PE=3 SV=1
Length = 526
Score = 30.4 bits (67), Expect = 3.0, Method: Composition-based stats.
Identities = 21/62 (33%), Positives = 34/62 (54%), Gaps = 6/62 (9%)
Query: 20 SKLNNRFHELEDEIKFAKETNDNLEDAGNELI-----LTDEDIVRFQIGEVFAHVPREEV 74
S+L R ++ D+++ AK+ ND L DA L+ LT I+ Q G+V A++P +
Sbjct: 297 SRLLERAAKITDDVEVAKKMND-LPDALKPLVKGGGSLTALPIIETQAGDVSAYIPTNVI 355
Query: 75 EI 76
I
Sbjct: 356 SI 357
>sp|B3PP95|SECA_RHIE6 Protein translocase subunit SecA OS=Rhizobium etli (strain CIAT
652) GN=secA PE=3 SV=1
Length = 904
Score = 30.0 bits (66), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 29/97 (29%), Positives = 45/97 (46%), Gaps = 9/97 (9%)
Query: 2 EKSDTVVTWEDQQNINKFSKLNNRFHELEDEI------KFAKETNDNLEDAGNELILTDE 55
EKS+ + +Q N F LN R+HE E I A N+ G ++ L
Sbjct: 449 EKSELLAERLRKQGFNDFQVLNARYHEQEAYIVAQAGVPGAVTIATNMAGRGTDIQLGGN 508
Query: 56 DIVRF--QIGEVFAHVPRE-EVEIRIEEMKEVNSKTL 89
+R ++GE+ A RE ++ +EE+KE+ K L
Sbjct: 509 LEMRIERELGEIEAGPEREARIQAIVEEIKELKQKAL 545
>sp|Q86B79|UNK_DROME RING finger protein unkempt OS=Drosophila melanogaster GN=unk PE=1
SV=1
Length = 599
Score = 29.6 bits (65), Expect = 5.3, Method: Composition-based stats.
Identities = 22/94 (23%), Positives = 44/94 (46%), Gaps = 17/94 (18%)
Query: 18 KFSKLNNRFHELEDEIKFAKETNDNLEDAGNELILTDEDIVRFQIGEVFAHVPREEVEIR 77
+ KLN RF ++ ++K A+ D + E R+ + ++ ++P E ++
Sbjct: 473 QIHKLNGRFEDMACKLKIAELHRDKAKQEAQEWK------ERYDLAQIQLNLPAELRDLS 526
Query: 78 IEEMKEVNSKTLEKLEKEKETVLAQMNELKKILY 111
I+++K++ SK LE E+ K+LY
Sbjct: 527 IQKLKQLQSKLRTDLE-----------EVDKVLY 549
>sp|Q8TAG9|EXOC6_HUMAN Exocyst complex component 6 OS=Homo sapiens GN=EXOC6 PE=1 SV=3
Length = 804
Score = 29.6 bits (65), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 42/75 (56%), Gaps = 2/75 (2%)
Query: 38 ETNDNLEDAGNELILTDEDIVRFQIGEVFAHVPREEVEIRIEEMKEVNSKTLEKLE-KEK 96
+TN +DAG E+I+ EDI+R +I + E++++ + + E+ SK E++ K
Sbjct: 96 DTNRRFQDAGKEVIVHTEDIIRCRIQQRNITTVVEKLQLCLPVL-EMYSKLKEQMSAKRY 154
Query: 97 ETVLAQMNELKKILY 111
+ L M +L+ + +
Sbjct: 155 YSALKTMEQLENVYF 169
>sp|E2R766|EXOC6_CANFA Exocyst complex component 6 OS=Canis familiaris GN=EXOC6 PE=3 SV=1
Length = 803
Score = 29.6 bits (65), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 18/25 (72%)
Query: 38 ETNDNLEDAGNELILTDEDIVRFQI 62
+TN +DAG E+I+ EDI+R +I
Sbjct: 96 DTNRRFQDAGKEVIIQTEDIIRCRI 120
>sp|O64692|G2OX3_ARATH Gibberellin 2-beta-dioxygenase 3 OS=Arabidopsis thaliana GN=GA2OX3
PE=2 SV=1
Length = 335
Score = 29.3 bits (64), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 17/34 (50%), Positives = 23/34 (67%), Gaps = 3/34 (8%)
Query: 65 VFAHVP---REEVEIRIEEMKEVNSKTLEKLEKE 95
+F H P RE VE I+EMK ++SK LE +E+E
Sbjct: 125 IFRHTPAIFREAVEEYIKEMKRMSSKFLEMVEEE 158
>sp|Q2K3R7|SECA_RHIEC Protein translocase subunit SecA OS=Rhizobium etli (strain CFN 42 /
ATCC 51251) GN=secA PE=3 SV=1
Length = 904
Score = 29.3 bits (64), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 29/97 (29%), Positives = 45/97 (46%), Gaps = 9/97 (9%)
Query: 2 EKSDTVVTWEDQQNINKFSKLNNRFHELEDEI------KFAKETNDNLEDAGNELILTDE 55
EKS+ + +Q N F LN R+HE E I A N+ G ++ L
Sbjct: 449 EKSELLAERMRKQGFNDFQVLNARYHEQEAYIVAQAGVPGAVTIATNMAGRGTDIQLGGN 508
Query: 56 DIVRF--QIGEVFAHVPRE-EVEIRIEEMKEVNSKTL 89
+R ++GE+ A R+ V+ +EE+KE+ K L
Sbjct: 509 LDMRIERELGELEAGPERDARVQAIVEEIKELKQKAL 545
>sp|A7Z971|PPAX_BACA2 Pyrophosphatase PpaX OS=Bacillus amyloliquefaciens (strain FZB42)
GN=ppaX PE=3 SV=1
Length = 216
Score = 28.9 bits (63), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 38/75 (50%), Gaps = 9/75 (12%)
Query: 55 EDIVRF---QIGEVFAHVPREEVEIRIEEMKEVNSKTLEKLEKEKETVLAQMNELKKILY 111
ED++ F + E F+ + E+ + I + N + ++L E ETV ++ELKK Y
Sbjct: 43 EDVLPFIGPPLYETFSGINAEKCDEMISMYRAFNHEKHDELVTEYETVYETLDELKKAGY 102
Query: 112 ------GKFRDSINL 120
K RD++N+
Sbjct: 103 QLGIVTTKLRDTVNM 117
>sp|B7ZRU9|EVI1A_XENLA MDS1 and EVI1 complex locus protein EVI1-A OS=Xenopus laevis
GN=mecom-a PE=1 SV=1
Length = 1055
Score = 28.9 bits (63), Expect = 9.4, Method: Composition-based stats.
Identities = 26/80 (32%), Positives = 40/80 (50%), Gaps = 19/80 (23%)
Query: 17 NKFSKLNN--RFHELEDEIKFAKETNDNLEDAGNELILTDEDIVRFQIGEVFAHVPREEV 74
NK S LN+ R + D+I A + +D L+D +E IL ++D EE
Sbjct: 858 NKQSPLNSDERINGSHDKIMLAGQNSDILDDDEDEAILDEDD---------------EES 902
Query: 75 EIRIEEMKEVNSKTLEKLEK 94
+I ++ MKE N+ + LEK
Sbjct: 903 DIAVKVMKEPNTSVM--LEK 920
>sp|G0LFB0|SAHH_HALWC Adenosylhomocysteinase OS=Haloquadratum walsbyi (strain DSM 16854 /
JCM 12705 / C23) GN=ahcY PE=3 SV=1
Length = 432
Score = 28.9 bits (63), Expect = 9.7, Method: Composition-based stats.
Identities = 19/68 (27%), Positives = 31/68 (45%)
Query: 47 GNELILTDEDIVRFQIGEVFAHVPREEVEIRIEEMKEVNSKTLEKLEKEKETVLAQMNEL 106
GN ++T ED G + A+ +VEI +EE+ E+ T E + + LA L
Sbjct: 283 GNRDVITQEDFEVMSDGAILANAGHFDVEINLEELSELAIDTYEARDGVQAYELADGRRL 342
Query: 107 KKILYGKF 114
+ G+
Sbjct: 343 NVLAEGRL 350
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.309 0.130 0.344
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 45,511,366
Number of Sequences: 539616
Number of extensions: 1946438
Number of successful extensions: 11734
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 79
Number of HSP's successfully gapped in prelim test: 416
Number of HSP's that attempted gapping in prelim test: 11283
Number of HSP's gapped (non-prelim): 856
length of query: 123
length of database: 191,569,459
effective HSP length: 90
effective length of query: 33
effective length of database: 143,004,019
effective search space: 4719132627
effective search space used: 4719132627
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 55 (25.8 bits)