Query 040215
Match_columns 123
No_of_seqs 106 out of 217
Neff 5.0
Searched_HMMs 46136
Date Fri Mar 29 06:14:19 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040215.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/040215hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1760 Molecular chaperone Pr 100.0 7E-50 1.5E-54 293.1 14.3 121 3-123 9-131 (131)
2 PF01920 Prefoldin_2: Prefoldi 99.8 8.4E-20 1.8E-24 126.0 13.1 105 13-117 1-106 (106)
3 COG1382 GimC Prefoldin, chaper 99.7 1.5E-15 3.2E-20 111.2 12.0 115 7-121 3-118 (119)
4 cd00632 Prefoldin_beta Prefold 99.5 7.1E-14 1.5E-18 98.5 10.7 100 13-112 2-102 (105)
5 cd00890 Prefoldin Prefoldin is 99.4 7.5E-12 1.6E-16 88.9 12.3 102 12-113 11-127 (129)
6 TIGR02338 gimC_beta prefoldin, 98.7 3.3E-07 7E-12 65.2 12.0 107 9-115 2-109 (110)
7 PRK09343 prefoldin subunit bet 98.6 1.5E-06 3.1E-11 63.2 11.3 108 7-114 4-112 (121)
8 PRK03947 prefoldin subunit alp 98.1 0.00017 3.8E-09 52.6 13.1 101 10-110 6-131 (140)
9 TIGR00293 prefoldin, archaeal 97.8 0.0018 3.8E-08 46.3 13.1 99 13-111 2-124 (126)
10 cd00584 Prefoldin_alpha Prefol 97.7 0.0028 6E-08 45.5 13.0 58 57-114 70-128 (129)
11 KOG3478 Prefoldin subunit 6, K 97.6 0.0012 2.6E-08 48.5 9.9 98 13-110 8-106 (120)
12 PF02996 Prefoldin: Prefoldin 97.4 0.004 8.7E-08 43.7 10.2 57 56-112 59-116 (120)
13 PRK14011 prefoldin subunit alp 97.3 0.026 5.6E-07 42.5 14.0 105 10-114 3-129 (144)
14 cd00890 Prefoldin Prefoldin is 96.3 0.07 1.5E-06 37.5 9.5 98 13-110 2-117 (129)
15 COG1730 GIM5 Predicted prefold 94.7 1.4 3E-05 33.4 11.9 54 57-110 77-131 (145)
16 COG1382 GimC Prefoldin, chaper 94.4 0.28 6E-06 36.2 7.3 98 7-106 10-110 (119)
17 KOG3501 Molecular chaperone Pr 94.2 0.35 7.7E-06 35.3 7.5 88 17-104 3-98 (114)
18 PF05529 Bap31: B-cell recepto 92.9 1.2 2.7E-05 33.9 8.9 68 16-110 117-184 (192)
19 KOG4098 Molecular chaperone Pr 91.8 3.2 7E-05 31.4 9.7 102 6-108 11-114 (140)
20 PF02996 Prefoldin: Prefoldin 91.1 1.1 2.3E-05 31.2 6.3 48 63-110 59-107 (120)
21 TIGR02338 gimC_beta prefoldin, 91.0 1.8 3.9E-05 30.5 7.4 91 19-110 5-97 (110)
22 cd00632 Prefoldin_beta Prefold 90.7 1.5 3.3E-05 30.5 6.7 85 24-109 6-92 (105)
23 PF01920 Prefoldin_2: Prefoldi 86.2 6.4 0.00014 26.5 7.3 88 16-105 11-101 (106)
24 PRK09343 prefoldin subunit bet 84.6 7.9 0.00017 27.9 7.5 48 68-115 73-120 (121)
25 PF10186 Atg14: UV radiation r 82.3 17 0.00037 28.4 9.2 83 23-111 19-101 (302)
26 PF13758 Prefoldin_3: Prefoldi 82.1 6.8 0.00015 28.1 6.1 47 57-103 51-98 (99)
27 PRK01203 prefoldin subunit alp 81.7 19 0.00042 26.8 11.9 51 57-107 70-121 (130)
28 PRK02224 chromosome segregatio 80.5 23 0.00051 32.5 10.6 82 26-109 421-504 (880)
29 PF06632 XRCC4: DNA double-str 79.4 8.9 0.00019 32.7 7.0 38 77-114 148-185 (342)
30 PF08286 Spc24: Spc24 subunit 79.3 0.82 1.8E-05 32.7 0.7 48 73-122 13-76 (118)
31 PRK03918 chromosome segregatio 79.0 39 0.00083 30.9 11.4 83 23-108 404-487 (880)
32 cd00584 Prefoldin_alpha Prefol 79.0 9.8 0.00021 26.9 6.2 97 14-110 3-117 (129)
33 PRK03947 prefoldin subunit alp 78.8 12 0.00026 27.0 6.7 91 20-110 9-124 (140)
34 PHA03030 hypothetical protein; 76.6 4.8 0.0001 29.5 4.0 32 11-42 50-84 (122)
35 PRK01156 chromosome segregatio 76.4 27 0.0006 32.3 9.8 43 63-106 453-495 (895)
36 PF08199 E2: Bacteriophage E2- 76.3 0.84 1.8E-05 27.0 0.0 13 106-118 2-14 (37)
37 COG4064 MtrG Tetrahydromethano 76.1 3.8 8.2E-05 27.9 3.1 32 88-119 16-47 (75)
38 PF07195 FliD_C: Flagellar hoo 75.7 6.8 0.00015 30.8 5.0 40 76-115 189-228 (239)
39 TIGR00293 prefoldin, archaeal 74.2 14 0.00031 26.0 6.0 89 21-110 3-116 (126)
40 PF08317 Spc7: Spc7 kinetochor 74.1 15 0.00031 30.5 6.8 97 12-110 164-267 (325)
41 COG0216 PrfA Protein chain rel 73.3 44 0.00095 29.0 9.5 43 11-54 30-72 (363)
42 PF02388 FemAB: FemAB family; 70.7 18 0.00038 30.9 6.7 95 14-120 194-305 (406)
43 KOG4196 bZIP transcription fac 70.4 22 0.00047 26.8 6.3 40 75-114 76-115 (135)
44 PF02183 HALZ: Homeobox associ 69.1 23 0.00049 21.7 5.2 35 78-112 10-44 (45)
45 PRK06798 fliD flagellar cappin 68.1 9.5 0.00021 33.2 4.6 37 79-115 378-414 (440)
46 smart00338 BRLZ basic region l 67.7 28 0.00061 21.9 5.9 36 75-110 28-63 (65)
47 PRK00888 ftsB cell division pr 67.6 20 0.00043 25.4 5.4 44 18-62 42-87 (105)
48 PRK10884 SH3 domain-containing 67.2 60 0.0013 25.6 8.6 78 22-109 91-168 (206)
49 KOG0971 Microtubule-associated 66.8 43 0.00094 32.8 8.8 88 20-117 272-362 (1243)
50 KOG1029 Endocytic adaptor prot 66.5 51 0.0011 31.9 9.1 97 15-113 484-582 (1118)
51 COG1730 GIM5 Predicted prefold 66.4 54 0.0012 24.7 9.0 43 65-107 78-121 (145)
52 smart00787 Spc7 Spc7 kinetocho 64.7 51 0.0011 27.6 8.1 98 11-110 158-262 (312)
53 PF09738 DUF2051: Double stran 64.7 68 0.0015 26.9 8.9 105 10-114 133-246 (302)
54 PF04977 DivIC: Septum formati 62.3 24 0.00052 22.4 4.7 34 73-106 17-50 (80)
55 PRK08032 fliD flagellar cappin 62.2 18 0.00039 31.5 5.2 37 79-115 405-441 (462)
56 PRK11637 AmiB activator; Provi 62.0 64 0.0014 27.5 8.4 38 75-112 98-135 (428)
57 PF00170 bZIP_1: bZIP transcri 62.0 37 0.00081 21.3 6.2 34 76-109 29-62 (64)
58 PRK07737 fliD flagellar cappin 61.5 15 0.00033 32.4 4.7 33 83-115 444-476 (501)
59 COG1579 Zn-ribbon protein, pos 61.1 83 0.0018 25.7 8.6 81 17-109 89-171 (239)
60 KOG2196 Nuclear porin [Nuclear 60.1 61 0.0013 26.9 7.6 97 8-105 101-203 (254)
61 PRK05771 V-type ATP synthase s 59.6 92 0.002 28.1 9.4 42 69-110 82-123 (646)
62 PRK06664 fliD flagellar hook-a 59.3 18 0.00039 33.4 4.9 37 79-115 599-635 (661)
63 PRK01156 chromosome segregatio 58.5 1.6E+02 0.0034 27.4 11.3 83 19-107 418-503 (895)
64 PF03961 DUF342: Protein of un 57.5 1.2E+02 0.0026 26.1 9.5 79 13-106 330-408 (451)
65 PF12128 DUF3584: Protein of u 57.0 1.6E+02 0.0034 28.9 10.9 61 58-118 877-937 (1201)
66 TIGR03185 DNA_S_dndD DNA sulfu 56.9 1E+02 0.0022 27.8 9.2 36 75-110 430-465 (650)
67 PF06156 DUF972: Protein of un 56.7 30 0.00066 24.7 4.8 28 78-105 13-40 (107)
68 PF14389 Lzipper-MIP1: Leucine 56.5 62 0.0013 22.1 8.4 81 21-112 5-86 (88)
69 PF10174 Cast: RIM-binding pro 56.5 1.1E+02 0.0025 28.9 9.6 91 17-110 53-151 (775)
70 PRK03918 chromosome segregatio 56.4 1.6E+02 0.0035 26.9 11.4 23 17-39 612-634 (880)
71 PF15518 L_protein_N: L protei 55.6 7.5 0.00016 30.6 1.6 52 66-117 94-175 (183)
72 PF04201 TPD52: Tumour protein 55.5 48 0.001 25.7 6.0 35 76-110 32-66 (162)
73 COG1579 Zn-ribbon protein, pos 55.4 1.1E+02 0.0025 24.9 9.5 31 14-44 35-65 (239)
74 PF03962 Mnd1: Mnd1 family; I 54.7 67 0.0014 24.8 6.8 57 51-108 39-97 (188)
75 PF08946 Osmo_CC: Osmosensory 54.7 26 0.00057 21.9 3.6 31 72-102 4-34 (46)
76 PF05010 TACC: Transforming ac 53.9 65 0.0014 25.6 6.7 95 17-112 90-186 (207)
77 PF11285 DUF3086: Protein of u 53.5 38 0.00083 28.4 5.4 33 72-104 3-35 (283)
78 PF05524 PEP-utilisers_N: PEP- 52.7 22 0.00048 24.8 3.5 56 60-117 10-65 (123)
79 PF05565 Sipho_Gp157: Siphovir 52.5 66 0.0014 24.1 6.3 40 74-113 48-87 (162)
80 KOG4657 Uncharacterized conser 51.4 1.4E+02 0.003 24.7 9.8 42 74-115 87-128 (246)
81 PF12325 TMF_TATA_bd: TATA ele 51.3 93 0.002 22.7 7.7 35 16-50 15-53 (120)
82 cd04769 HTH_MerR2 Helix-Turn-H 50.3 53 0.0012 22.9 5.2 40 70-109 76-115 (116)
83 PRK08724 fliD flagellar cappin 50.2 38 0.00083 31.6 5.5 36 80-115 617-652 (673)
84 PF03789 ELK: ELK domain ; In 50.0 5.4 0.00012 21.3 -0.0 15 105-119 1-15 (22)
85 TIGR01149 mtrG N5-methyltetrah 49.8 31 0.00067 23.3 3.6 31 88-118 13-43 (70)
86 PF00170 bZIP_1: bZIP transcri 49.7 63 0.0014 20.2 5.6 35 78-112 24-58 (64)
87 PRK14127 cell division protein 49.6 94 0.002 22.4 6.4 46 66-111 20-68 (109)
88 PF03148 Tektin: Tektin family 49.3 1.3E+02 0.0028 25.6 8.2 91 22-112 62-155 (384)
89 PF11932 DUF3450: Protein of u 49.3 1.3E+02 0.0028 23.7 10.6 38 75-112 72-109 (251)
90 COG2919 Septum formation initi 49.2 33 0.00071 24.5 4.0 49 18-72 65-113 (117)
91 cd07596 BAR_SNX The Bin/Amphip 48.4 44 0.00096 24.6 4.8 32 19-50 6-37 (218)
92 PF04201 TPD52: Tumour protein 48.2 40 0.00087 26.1 4.5 29 79-114 28-56 (162)
93 PF02183 HALZ: Homeobox associ 48.2 62 0.0013 19.7 5.2 35 77-111 2-36 (45)
94 PRK00578 prfB peptide chain re 47.9 1.8E+02 0.0038 25.2 8.8 39 9-47 44-82 (367)
95 PF04210 MtrG: Tetrahydrometha 47.6 36 0.00079 23.0 3.7 30 89-118 14-43 (70)
96 PF08172 CASP_C: CASP C termin 47.6 77 0.0017 25.8 6.3 92 18-113 7-129 (248)
97 PF02090 SPAM: Salmonella surf 47.4 1.1E+02 0.0023 23.5 6.6 43 71-113 14-56 (147)
98 PRK02793 phi X174 lysis protei 47.4 57 0.0012 21.6 4.7 25 83-107 32-56 (72)
99 TIGR03592 yidC_oxa1_cterm memb 47.4 66 0.0014 24.3 5.6 43 75-117 24-66 (181)
100 PRK02224 chromosome segregatio 47.0 2.4E+02 0.0051 26.1 11.0 35 76-110 254-288 (880)
101 PRK01026 tetrahydromethanopter 46.9 35 0.00076 23.4 3.6 28 91-118 19-46 (77)
102 PRK06746 peptide chain release 46.9 1.8E+02 0.004 24.8 8.9 36 9-47 6-41 (326)
103 KOG0995 Centromere-associated 46.8 79 0.0017 29.1 6.8 38 75-112 289-326 (581)
104 PHA01750 hypothetical protein 46.5 91 0.002 21.1 6.2 36 75-110 37-72 (75)
105 PF12718 Tropomyosin_1: Tropom 46.4 1E+02 0.0022 22.8 6.4 33 78-110 33-65 (143)
106 PRK13729 conjugal transfer pil 45.5 68 0.0015 28.8 6.1 24 87-110 97-120 (475)
107 PRK00591 prfA peptide chain re 45.3 2E+02 0.0043 24.8 9.0 38 9-46 27-64 (359)
108 COG4026 Uncharacterized protei 45.1 1.5E+02 0.0033 24.6 7.7 37 14-50 125-161 (290)
109 PF07889 DUF1664: Protein of u 44.5 1.2E+02 0.0026 22.4 6.4 35 72-106 53-87 (126)
110 PF07106 TBPIP: Tat binding pr 44.0 34 0.00074 25.4 3.5 34 75-108 74-107 (169)
111 PF03980 Nnf1: Nnf1 ; InterPr 43.7 1.1E+02 0.0023 21.1 6.9 29 79-107 79-107 (109)
112 PRK14127 cell division protein 43.3 1.2E+02 0.0025 21.9 6.1 32 75-106 39-70 (109)
113 PF05615 THOC7: Tho complex su 43.2 1.2E+02 0.0025 21.8 6.2 30 81-110 75-104 (139)
114 KOG2189 Vacuolar H+-ATPase V0 43.0 3.2E+02 0.0068 26.4 10.2 80 18-111 50-130 (829)
115 PRK05771 V-type ATP synthase s 42.6 2.6E+02 0.0056 25.3 12.1 32 79-110 214-245 (646)
116 PF13815 Dzip-like_N: Iguana/D 42.2 1.2E+02 0.0027 21.4 6.2 25 84-108 91-115 (118)
117 PF06825 HSBP1: Heat shock fac 41.9 26 0.00056 22.4 2.2 44 66-109 7-50 (54)
118 PF05103 DivIVA: DivIVA protei 40.9 15 0.00033 25.6 1.2 45 64-108 77-121 (131)
119 PF07106 TBPIP: Tat binding pr 40.9 66 0.0014 23.9 4.7 50 62-111 53-103 (169)
120 PF06698 DUF1192: Protein of u 40.5 1E+02 0.0022 20.0 5.3 38 60-101 12-49 (59)
121 PRK09737 EcoKI restriction-mod 40.4 1.3E+02 0.0029 24.8 6.8 52 62-113 362-413 (461)
122 PRK11637 AmiB activator; Provi 40.2 2.3E+02 0.0051 24.1 11.0 39 74-112 90-128 (428)
123 PF05531 NPV_P10: Nucleopolyhe 40.0 81 0.0018 21.5 4.6 42 13-54 24-67 (75)
124 TIGR02209 ftsL_broad cell divi 39.9 59 0.0013 21.1 3.8 40 69-108 20-59 (85)
125 KOG1760 Molecular chaperone Pr 39.8 1E+02 0.0022 23.2 5.4 65 37-103 53-118 (131)
126 PF11336 DUF3138: Protein of u 39.5 43 0.00093 30.1 3.9 29 86-114 24-52 (514)
127 PF10458 Val_tRNA-synt_C: Valy 39.5 85 0.0018 20.0 4.5 18 76-93 7-24 (66)
128 COG2433 Uncharacterized conser 39.4 1.1E+02 0.0024 28.6 6.6 45 70-114 426-470 (652)
129 PF04111 APG6: Autophagy prote 39.0 1.6E+02 0.0034 24.6 7.0 36 76-111 53-88 (314)
130 PRK13169 DNA replication intia 38.9 83 0.0018 22.7 4.7 35 75-109 10-44 (110)
131 PF13166 AAA_13: AAA domain 38.5 1.3E+02 0.0028 27.0 6.8 32 78-109 422-453 (712)
132 TIGR00606 rad50 rad50. This fa 38.4 3.3E+02 0.0071 26.9 10.0 28 23-50 933-960 (1311)
133 PF15290 Syntaphilin: Golgi-lo 38.0 58 0.0013 27.6 4.3 31 82-112 70-100 (305)
134 PRK10869 recombination and rep 37.9 1.8E+02 0.0038 26.1 7.6 45 73-118 265-319 (553)
135 PF08826 DMPK_coil: DMPK coile 37.1 1.2E+02 0.0026 19.7 6.0 31 78-108 30-60 (61)
136 PF02096 60KD_IMP: 60Kd inner 37.1 1.2E+02 0.0026 22.7 5.7 42 74-115 24-65 (198)
137 PHA02562 46 endonuclease subun 36.6 2.8E+02 0.006 23.9 11.1 42 58-101 286-327 (562)
138 PRK05589 peptide chain release 36.4 2.5E+02 0.0053 23.9 7.9 39 9-47 6-44 (325)
139 PF13870 DUF4201: Domain of un 36.3 1.5E+02 0.0032 22.1 6.0 39 15-53 4-43 (177)
140 PRK15335 type III secretion sy 36.3 1.9E+02 0.004 22.0 6.4 43 71-113 14-56 (147)
141 KOG4010 Coiled-coil protein TP 36.0 1.3E+02 0.0027 24.3 5.7 33 78-110 49-81 (208)
142 PF09304 Cortex-I_coil: Cortex 35.7 1.7E+02 0.0037 21.2 7.7 70 24-107 9-78 (107)
143 PF14193 DUF4315: Domain of un 35.7 1.1E+02 0.0025 21.0 4.8 26 78-103 6-31 (83)
144 PF04728 LPP: Lipoprotein leuc 35.5 1.2E+02 0.0027 19.5 5.6 27 84-110 7-33 (56)
145 PF07798 DUF1640: Protein of u 34.9 2E+02 0.0043 21.7 9.6 34 17-50 73-107 (177)
146 PF14193 DUF4315: Domain of un 34.8 1.4E+02 0.003 20.5 5.2 28 82-109 3-30 (83)
147 PF11315 Med30: Mediator compl 34.2 2.1E+02 0.0046 21.8 8.6 95 15-110 43-138 (150)
148 PF04568 IATP: Mitochondrial A 34.0 1.4E+02 0.003 21.3 5.2 26 76-101 72-97 (100)
149 PF06386 GvpL_GvpF: Gas vesicl 34.0 27 0.00059 27.5 1.7 39 55-95 76-114 (249)
150 PF08657 DASH_Spc34: DASH comp 33.7 1.6E+02 0.0035 24.1 6.3 24 75-98 234-257 (259)
151 PF12329 TMF_DNA_bd: TATA elem 33.6 1.4E+02 0.0031 19.7 6.1 40 71-110 31-70 (74)
152 PF11221 Med21: Subunit 21 of 33.6 1.6E+02 0.0035 21.6 5.7 44 5-50 94-137 (144)
153 PF02994 Transposase_22: L1 tr 33.5 1.8E+02 0.0039 24.7 6.7 27 12-38 93-119 (370)
154 PF00261 Tropomyosin: Tropomyo 33.0 2.4E+02 0.0052 22.1 7.4 23 84-106 138-160 (237)
155 PRK12765 flagellar capping pro 32.8 87 0.0019 28.5 4.9 37 78-114 530-566 (595)
156 PRK00846 hypothetical protein; 32.6 1.5E+02 0.0033 20.1 5.0 34 74-107 28-61 (77)
157 PF04325 DUF465: Protein of un 32.6 1.2E+02 0.0025 18.3 4.3 31 78-108 4-34 (49)
158 PF13600 DUF4140: N-terminal d 32.4 1.6E+02 0.0034 19.9 5.2 29 81-109 71-99 (104)
159 PF14560 Ubiquitin_2: Ubiquiti 32.3 40 0.00087 22.2 2.1 17 102-118 25-41 (87)
160 TIGR02894 DNA_bind_RsfA transc 32.0 1.9E+02 0.0042 22.4 6.0 30 21-50 50-80 (161)
161 PF10602 RPN7: 26S proteasome 31.8 1.7E+02 0.0037 22.0 5.7 41 76-116 3-51 (177)
162 PF03234 CDC37_N: Cdc37 N term 31.8 1.2E+02 0.0027 23.5 5.0 60 49-112 9-71 (177)
163 PRK04325 hypothetical protein; 31.7 1.6E+02 0.0034 19.5 5.7 29 77-105 27-55 (74)
164 PF08172 CASP_C: CASP C termin 31.3 2.9E+02 0.0062 22.4 8.8 41 79-119 85-125 (248)
165 KOG0933 Structural maintenance 31.3 3.9E+02 0.0085 26.7 9.1 38 13-50 811-848 (1174)
166 PRK11546 zraP zinc resistance 31.2 2.3E+02 0.005 21.4 9.0 37 7-43 43-80 (143)
167 COG2433 Uncharacterized conser 31.1 3.5E+02 0.0077 25.4 8.4 31 77-107 478-508 (652)
168 COG3883 Uncharacterized protei 31.0 1.5E+02 0.0033 24.6 5.7 30 80-109 73-102 (265)
169 PRK15355 type III secretion sy 31.0 32 0.0007 23.9 1.5 14 11-24 18-31 (82)
170 PRK00888 ftsB cell division pr 30.9 1.6E+02 0.0034 20.8 5.0 35 74-108 28-62 (105)
171 PF10158 LOH1CR12: Tumour supp 30.9 2.2E+02 0.0047 21.0 6.0 35 81-116 50-84 (131)
172 PRK00295 hypothetical protein; 30.8 1.6E+02 0.0034 19.2 5.8 23 83-105 29-51 (68)
173 cd08637 DNA_pol_A_pol_I_C Poly 30.6 1E+02 0.0022 26.1 4.8 40 76-115 3-48 (377)
174 PF15205 PLAC9: Placenta-speci 30.6 1.8E+02 0.0038 19.8 5.5 36 73-108 22-57 (74)
175 cd01106 HTH_TipAL-Mta Helix-Tu 30.6 1.7E+02 0.0037 19.8 5.1 25 72-96 72-96 (103)
176 PTZ00464 SNF-7-like protein; P 30.3 2.8E+02 0.006 22.0 6.9 38 69-106 14-51 (211)
177 PF06785 UPF0242: Uncharacteri 30.2 3.8E+02 0.0082 23.5 8.4 89 13-106 74-167 (401)
178 PRK14160 heat shock protein Gr 30.1 1.7E+02 0.0036 23.5 5.6 34 76-109 50-83 (211)
179 PF10267 Tmemb_cc2: Predicted 30.1 3.5E+02 0.0075 23.7 7.9 78 16-104 211-293 (395)
180 PF08154 NLE: NLE (NUC135) dom 30.0 70 0.0015 20.4 2.9 33 41-73 29-63 (65)
181 PRK09039 hypothetical protein; 29.8 3.4E+02 0.0073 22.8 9.7 34 17-50 130-163 (343)
182 KOG4603 TBP-1 interacting prot 29.8 2.1E+02 0.0045 22.8 6.0 74 36-110 42-116 (201)
183 PF00804 Syntaxin: Syntaxin; 29.8 1.6E+02 0.0034 19.0 9.2 70 19-102 2-71 (103)
184 PF07889 DUF1664: Protein of u 29.5 1.6E+02 0.0036 21.7 5.1 39 73-111 82-120 (126)
185 COG5509 Uncharacterized small 29.3 1.2E+02 0.0026 20.1 3.9 12 84-95 36-47 (65)
186 PF11471 Sugarporin_N: Maltopo 29.3 1.6E+02 0.0035 18.9 4.5 30 78-107 30-59 (60)
187 PF04799 Fzo_mitofusin: fzo-li 29.3 2.5E+02 0.0055 21.9 6.3 68 41-114 79-153 (171)
188 KOG3313 Molecular chaperone Pr 29.2 1.5E+02 0.0032 23.6 5.0 47 57-103 111-158 (187)
189 PF03962 Mnd1: Mnd1 family; I 28.7 2.7E+02 0.0059 21.4 11.5 29 13-41 65-93 (188)
190 PF11598 COMP: Cartilage oligo 28.5 1.5E+02 0.0032 18.3 5.4 39 12-50 3-41 (45)
191 PF08286 Spc24: Spc24 subunit 28.0 20 0.00043 25.5 0.0 33 78-110 4-36 (118)
192 PF05103 DivIVA: DivIVA protei 28.0 57 0.0012 22.7 2.4 41 63-107 12-52 (131)
193 TIGR01062 parC_Gneg DNA topois 28.0 4.5E+02 0.0099 24.8 8.8 42 67-108 403-445 (735)
194 COG0497 RecN ATPase involved i 27.9 1.1E+02 0.0025 27.9 4.8 46 72-118 272-320 (557)
195 PF10158 LOH1CR12: Tumour supp 27.8 2.1E+02 0.0045 21.1 5.4 53 9-61 72-127 (131)
196 PF15372 DUF4600: Domain of un 27.7 2.4E+02 0.0053 21.0 5.8 80 2-103 2-81 (129)
197 COG4717 Uncharacterized conser 27.6 54 0.0012 31.8 2.8 29 55-83 925-953 (984)
198 COG3883 Uncharacterized protei 27.6 2.5E+02 0.0054 23.4 6.4 7 44-50 48-54 (265)
199 TIGR02169 SMC_prok_A chromosom 27.5 5.1E+02 0.011 24.2 11.0 73 17-110 819-891 (1164)
200 PF04420 CHD5: CHD5-like prote 27.5 72 0.0016 23.9 3.0 30 13-42 62-91 (161)
201 PF13863 DUF4200: Domain of un 27.5 2.1E+02 0.0046 19.7 6.3 23 85-107 79-101 (126)
202 PRK13922 rod shape-determining 27.1 2E+02 0.0043 22.8 5.6 38 76-113 72-112 (276)
203 KOG4253 Tryptophan-rich basic 27.0 1E+02 0.0023 24.1 3.8 28 12-39 65-92 (175)
204 cd01789 Alp11_N Ubiquitin-like 26.9 49 0.0011 22.0 1.8 16 102-117 24-39 (84)
205 PF10046 BLOC1_2: Biogenesis o 26.7 2.2E+02 0.0047 19.6 6.0 39 76-115 24-62 (99)
206 PRK02119 hypothetical protein; 26.7 1.9E+02 0.0042 19.1 5.7 20 86-105 36-55 (73)
207 PF10359 Fmp27_WPPW: RNA pol I 26.7 3.8E+02 0.0082 23.5 7.7 37 77-113 197-233 (475)
208 COG1842 PspA Phage shock prote 26.7 2.6E+02 0.0056 22.4 6.2 29 19-47 47-75 (225)
209 PF05190 MutS_IV: MutS family 26.5 1.8E+02 0.0039 18.5 4.5 34 87-120 4-38 (92)
210 TIGR02977 phageshock_pspA phag 26.4 3E+02 0.0064 21.4 6.4 88 19-109 47-135 (219)
211 COG1842 PspA Phage shock prote 26.0 3.4E+02 0.0075 21.7 8.2 92 14-108 49-141 (225)
212 TIGR00020 prfB peptide chain r 26.0 4.3E+02 0.0094 22.8 8.3 37 10-46 45-81 (364)
213 PRK11239 hypothetical protein; 25.9 1.5E+02 0.0033 23.9 4.7 26 83-108 186-211 (215)
214 COG2919 Septum formation initi 25.9 2.2E+02 0.0047 20.3 5.1 36 74-109 51-86 (117)
215 cd01107 HTH_BmrR Helix-Turn-He 25.8 1.9E+02 0.0041 19.8 4.7 32 72-103 74-105 (108)
216 PF10211 Ax_dynein_light: Axon 25.7 2E+02 0.0044 22.1 5.3 29 79-107 133-161 (189)
217 PF02873 MurB_C: UDP-N-acetyle 25.5 93 0.002 22.0 3.1 26 95-122 74-99 (105)
218 PF15456 Uds1: Up-regulated Du 25.4 2.7E+02 0.0059 20.3 9.6 79 20-111 32-112 (124)
219 PF15397 DUF4618: Domain of un 25.4 3.1E+02 0.0066 22.7 6.5 44 67-110 61-104 (258)
220 COG4467 Regulator of replicati 25.4 1.8E+02 0.0038 21.4 4.5 27 84-110 5-31 (114)
221 PF07047 OPA3: Optic atrophy 3 25.3 57 0.0012 23.8 2.0 50 58-107 83-132 (134)
222 PF04859 DUF641: Plant protein 25.0 1.8E+02 0.0039 21.6 4.7 23 87-109 94-116 (131)
223 KOG4010 Coiled-coil protein TP 25.0 1.5E+02 0.0033 23.8 4.5 35 70-104 34-68 (208)
224 PF03670 UPF0184: Uncharacteri 24.9 2.3E+02 0.005 19.6 4.9 32 75-106 28-59 (83)
225 PF06103 DUF948: Bacterial pro 24.9 2.1E+02 0.0046 18.8 5.2 43 70-112 23-65 (90)
226 KOG2266 Chromatin-associated p 24.7 98 0.0021 28.3 3.7 30 89-120 529-558 (594)
227 PF10473 CENP-F_leu_zip: Leuci 24.7 3E+02 0.0065 20.6 5.9 32 78-109 57-88 (140)
228 COG3311 AlpA Predicted transcr 24.6 99 0.0021 20.7 2.9 33 51-83 34-66 (70)
229 PF11853 DUF3373: Protein of u 24.5 68 0.0015 28.9 2.7 30 80-110 25-54 (489)
230 KOG0996 Structural maintenance 24.3 7.5E+02 0.016 25.2 9.7 34 75-108 979-1012(1293)
231 PRK04863 mukB cell division pr 24.3 7.9E+02 0.017 25.3 10.2 34 17-50 1013-1046(1486)
232 KOG3856 Uncharacterized conser 24.1 2.3E+02 0.0049 21.4 5.0 35 82-116 12-46 (135)
233 PF14584 DUF4446: Protein of u 24.0 2.7E+02 0.0058 21.0 5.5 33 78-110 44-76 (151)
234 PF06120 Phage_HK97_TLTM: Tail 23.8 4.4E+02 0.0096 22.2 9.3 86 20-107 77-168 (301)
235 PRK15396 murein lipoprotein; P 23.8 2.4E+02 0.0053 19.1 5.3 32 81-112 26-57 (78)
236 PRK07342 peptide chain release 23.5 4.8E+02 0.01 22.4 8.6 36 9-47 8-43 (339)
237 COG5019 CDC3 Septin family pro 23.5 2.6E+02 0.0056 24.4 5.9 37 75-111 330-366 (373)
238 TIGR03185 DNA_S_dndD DNA sulfu 23.4 5.6E+02 0.012 23.2 10.4 23 84-106 432-454 (650)
239 KOG0243 Kinesin-like protein [ 23.3 7.5E+02 0.016 24.6 10.5 73 23-110 440-513 (1041)
240 PF12128 DUF3584: Protein of u 23.3 3.4E+02 0.0073 26.6 7.3 93 20-114 617-712 (1201)
241 cd01109 HTH_YyaN Helix-Turn-He 23.2 2.6E+02 0.0056 19.2 6.8 33 71-103 77-109 (113)
242 PF04102 SlyX: SlyX; InterPro 22.8 2.2E+02 0.0048 18.3 6.0 27 79-105 17-43 (69)
243 PF11641 Antigen_Bd37: Glycosy 22.7 1.4E+02 0.0031 24.1 3.9 28 86-116 196-223 (224)
244 COG1196 Smc Chromosome segrega 22.7 4.2E+02 0.009 25.9 7.7 33 18-50 675-707 (1163)
245 PF07888 CALCOCO1: Calcium bin 22.7 2.8E+02 0.006 25.4 6.2 7 90-96 160-166 (546)
246 PF04508 Pox_A_type_inc: Viral 22.6 1.4E+02 0.0031 16.0 2.8 16 84-99 5-20 (23)
247 PF06720 Phi-29_GP16_7: Bacter 22.6 37 0.00081 25.2 0.6 36 85-120 32-68 (130)
248 PF10211 Ax_dynein_light: Axon 22.4 1.8E+02 0.0039 22.4 4.4 24 84-107 124-147 (189)
249 PF06970 RepA_N: Replication i 22.4 61 0.0013 21.6 1.6 26 63-88 47-72 (76)
250 cd04779 HTH_MerR-like_sg4 Heli 22.3 3.2E+02 0.0069 19.9 5.8 31 77-107 78-108 (134)
251 PF00261 Tropomyosin: Tropomyo 22.3 3.9E+02 0.0084 21.0 6.9 90 18-110 135-227 (237)
252 PRK02654 putative inner membra 22.3 1E+02 0.0022 26.9 3.3 32 84-115 62-93 (375)
253 TIGR00019 prfA peptide chain r 22.1 5.2E+02 0.011 22.3 8.5 36 9-47 28-63 (360)
254 COG2825 HlpA Outer membrane pr 22.1 1.6E+02 0.0035 22.4 4.1 45 60-104 30-75 (170)
255 PRK01318 membrane protein inse 22.0 2.8E+02 0.0061 24.9 6.1 49 68-116 338-386 (521)
256 PF07061 Swi5: Swi5; InterPro 21.8 2.2E+02 0.0047 19.4 4.2 27 84-110 4-30 (83)
257 PHA02107 hypothetical protein 21.6 1.7E+02 0.0037 23.3 4.1 31 79-109 183-213 (216)
258 cd04766 HTH_HspR Helix-Turn-He 21.6 2.5E+02 0.0055 18.5 4.7 19 92-110 70-88 (91)
259 KOG4571 Activating transcripti 21.5 3.5E+02 0.0075 23.0 6.2 40 75-114 250-289 (294)
260 PF03148 Tektin: Tektin family 21.5 5.1E+02 0.011 22.0 7.6 85 20-110 261-354 (384)
261 PF08203 RNA_polI_A14: Yeast R 21.3 2.4E+02 0.0053 19.2 4.4 32 57-89 2-33 (76)
262 PRK02201 putative inner membra 21.1 2E+02 0.0043 24.7 4.8 48 69-116 149-202 (357)
263 PRK11546 zraP zinc resistance 21.1 2.2E+02 0.0048 21.5 4.5 19 95-113 90-108 (143)
264 TIGR01837 PHA_granule_1 poly(h 21.0 1.3E+02 0.0029 21.4 3.2 22 86-107 95-116 (118)
265 PF11932 DUF3450: Protein of u 21.0 3.4E+02 0.0074 21.4 5.9 32 76-107 66-97 (251)
266 TIGR01843 type_I_hlyD type I s 21.0 4.6E+02 0.01 21.3 9.0 23 21-43 78-100 (423)
267 KOG0976 Rho/Rac1-interacting s 21.0 5.1E+02 0.011 25.7 7.7 76 22-112 328-404 (1265)
268 PRK00736 hypothetical protein; 20.9 2.5E+02 0.0054 18.2 6.7 30 80-109 19-48 (68)
269 PRK09039 hypothetical protein; 20.9 3.4E+02 0.0073 22.8 6.1 25 21-45 78-102 (343)
270 PF10168 Nup88: Nuclear pore c 20.8 7.1E+02 0.015 23.4 9.6 40 71-110 630-669 (717)
271 TIGR02894 DNA_bind_RsfA transc 20.8 3.3E+02 0.0071 21.1 5.5 27 84-110 108-134 (161)
272 PTZ00009 heat shock 70 kDa pro 20.7 6.4E+02 0.014 22.9 10.7 28 88-115 590-617 (653)
273 PF00012 HSP70: Hsp70 protein; 20.5 5.6E+02 0.012 22.2 11.1 37 75-111 560-601 (602)
274 PF12718 Tropomyosin_1: Tropom 20.4 3.6E+02 0.0078 19.9 8.6 27 21-47 39-65 (143)
275 PF08336 P4Ha_N: Prolyl 4-Hydr 20.2 3E+02 0.0064 19.6 4.9 35 74-108 16-50 (134)
276 PRK08453 fliD flagellar cappin 20.2 2.2E+02 0.0047 26.7 5.1 38 78-115 619-656 (673)
277 COG4026 Uncharacterized protei 20.1 3.4E+02 0.0074 22.6 5.7 15 28-42 132-146 (290)
278 PF15397 DUF4618: Domain of un 20.1 4.1E+02 0.009 21.9 6.3 37 72-108 73-109 (258)
No 1
>KOG1760 consensus Molecular chaperone Prefoldin, subunit 4 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=7e-50 Score=293.10 Aligned_cols=121 Identities=49% Similarity=0.760 Sum_probs=117.9
Q ss_pred CccccccHHHHHHhHHHHhHHhhHHHHHHHHHHHHHhhhhhhhhhhhh-hcCCC-ccceeeecceeeecChhHHHHHHHH
Q 040215 3 KSDTVVTWEDQQNINKFSKLNNRFHELEDEIKFAKETNDNLEDAGNEL-ILTDE-DIVRFQIGEVFAHVPREEVEIRIEE 80 (123)
Q Consensus 3 ~~dveVt~EDQqkIN~FsrLn~r~~~l~~~l~~~k~~le~L~Da~~El-L~ddd-~~i~ykiGe~Fv~~~~~~a~e~LE~ 80 (123)
..+|+|||||||+||+|||+|+|.++++.+|+.+|+++++|+||++|| |+|+| ++|||+||+||+|++.+.++++||.
T Consensus 9 ~e~v~Vt~EDQq~iN~Fsrl~~R~~~lk~dik~~k~~~enledA~~EieL~Dedd~~Ip~~vGdvF~~~~~~~~~~~LEe 88 (131)
T KOG1760|consen 9 PEDVKVTFEDQQNINEFSRLNSRKDDLKADIKEAKTEIENLEDASNEIELLDEDDEDIPFKVGDVFIHVKLDKLQDQLEE 88 (131)
T ss_pred cccCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhHhhcCccccccceehhhhheeccHHHHHHHHHH
Confidence 457999999999999999999999999999999999999999999999 99987 6899999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcCCC
Q 040215 81 MKEVNSKTLEKLEKEKETVLAQMNELKKILYGKFRDSINLEED 123 (123)
Q Consensus 81 ~~e~~~~ei~~le~~~~~i~~~m~eLK~~LYaKFG~~INLE~~ 123 (123)
.++.+.++|+.|+++++.|..+|.+||++||||||++||||++
T Consensus 89 ~ke~l~k~i~~les~~e~I~~~m~~LK~~LYaKFgdnINLeae 131 (131)
T KOG1760|consen 89 KKETLEKEIEELESELESISARMDELKKVLYAKFGDNINLEAE 131 (131)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCccCC
Confidence 9999999999999999999999999999999999999999986
No 2
>PF01920 Prefoldin_2: Prefoldin subunit; InterPro: IPR002777 Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal beta subunit, eukaryotic prefoldin subunits 1, 2, 4 and 6. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 2ZDI_B 3AEI_B 2ZQM_A 1FXK_A.
Probab=99.84 E-value=8.4e-20 Score=126.00 Aligned_cols=105 Identities=33% Similarity=0.428 Sum_probs=100.0
Q ss_pred HHHhHHHHhHHhhHHHHHHHHHHHHHhhhhhhhhhhhh-hcCCCccceeeecceeeecChhHHHHHHHHHHHHHHHHHHH
Q 040215 13 QQNINKFSKLNNRFHELEDEIKFAKETNDNLEDAGNEL-ILTDEDIVRFQIGEVFAHVPREEVEIRIEEMKEVNSKTLEK 91 (123)
Q Consensus 13 QqkIN~FsrLn~r~~~l~~~l~~~k~~le~L~Da~~El-L~ddd~~i~ykiGe~Fv~~~~~~a~e~LE~~~e~~~~ei~~ 91 (123)
|+.|++|++++.++..+...+..+..++..++++..|| .+++|.+++..||.|||..|.+++.+.|+...+.++.+++.
T Consensus 1 Qe~~~~~~~l~~~l~~~~~q~~~l~~~~~~~~~~~~eL~~l~~~~~~y~~vG~~fv~~~~~~~~~~L~~~~~~~~~~i~~ 80 (106)
T PF01920_consen 1 QELQNKFQELNQQLQQLEQQIQQLERQLRELELTLEELEKLDDDRKVYKSVGKMFVKQDKEEAIEELEERIEKLEKEIKK 80 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSTT-EEEEEETTEEEEEEHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHhHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 89999999999999999999999999999999999999 88887788889999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCC
Q 040215 92 LEKEKETVLAQMNELKKILYGKFRDS 117 (123)
Q Consensus 92 le~~~~~i~~~m~eLK~~LYaKFG~~ 117 (123)
|+..+..+..+|.+++..||++||++
T Consensus 81 l~~~~~~l~~~l~~~~~~l~~~~~~q 106 (106)
T PF01920_consen 81 LEKQLKYLEKKLKELKKKLYELFGQQ 106 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCCCS--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 99999999999999999999999985
No 3
>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones]
Probab=99.67 E-value=1.5e-15 Score=111.19 Aligned_cols=115 Identities=22% Similarity=0.289 Sum_probs=110.2
Q ss_pred cccHHHHHHhHHHHhHHhhHHHHHHHHHHHHHhhhhhhhhhhhh-hcCCCccceeeecceeeecChhHHHHHHHHHHHHH
Q 040215 7 VVTWEDQQNINKFSKLNNRFHELEDEIKFAKETNDNLEDAGNEL-ILTDEDIVRFQIGEVFAHVPREEVEIRIEEMKEVN 85 (123)
Q Consensus 7 eVt~EDQqkIN~FsrLn~r~~~l~~~l~~~k~~le~L~Da~~El-L~ddd~~i~ykiGe~Fv~~~~~~a~e~LE~~~e~~ 85 (123)
++..+.|..+++|..|.+++..+-.+......++....+|..|| .+++|.+|.+.+|+.||.++.++|...|+...+.+
T Consensus 3 ~lpp~~q~~l~q~QqLq~ql~~~~~qk~~le~qL~E~~~al~Ele~l~eD~~vYk~VG~llvk~~k~~~~~eL~er~E~L 82 (119)
T COG1382 3 QLPPEVQAQLAQLQQLQQQLQKVILQKQQLEAQLKEIEKALEELEKLDEDAPVYKKVGNLLVKVSKEEAVDELEERKETL 82 (119)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccHHHHHhhhHHhhhhHHHHHHHHHHHHHHH
Confidence 46689999999999999999999999999999999999999999 88998888888999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcC
Q 040215 86 SKTLEKLEKEKETVLAQMNELKKILYGKFRDSINLE 121 (123)
Q Consensus 86 ~~ei~~le~~~~~i~~~m~eLK~~LYaKFG~~INLE 121 (123)
+-+|..|+...+.+++++.+|+..||++||..+|..
T Consensus 83 e~ri~tLekQe~~l~e~l~eLq~~i~~~l~~~~~~~ 118 (119)
T COG1382 83 ELRIKTLEKQEEKLQERLEELQSEIQKALGDAANGG 118 (119)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCC
Confidence 999999999999999999999999999999999875
No 4
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=99.55 E-value=7.1e-14 Score=98.53 Aligned_cols=100 Identities=19% Similarity=0.300 Sum_probs=95.7
Q ss_pred HHHhHHHHhHHhhHHHHHHHHHHHHHhhhhhhhhhhhh-hcCCCccceeeecceeeecChhHHHHHHHHHHHHHHHHHHH
Q 040215 13 QQNINKFSKLNNRFHELEDEIKFAKETNDNLEDAGNEL-ILTDEDIVRFQIGEVFAHVPREEVEIRIEEMKEVNSKTLEK 91 (123)
Q Consensus 13 QqkIN~FsrLn~r~~~l~~~l~~~k~~le~L~Da~~El-L~ddd~~i~ykiGe~Fv~~~~~~a~e~LE~~~e~~~~ei~~ 91 (123)
|+.|+.|-.|-..+..+...+..+...+....+|.+|| ++++|.++++.||.|||..|.++|...|+...+.++.++..
T Consensus 2 q~~~~~~q~l~~~~~~l~~~~~~l~~~~~E~~~v~~EL~~l~~d~~vy~~VG~vfv~~~~~ea~~~Le~~~e~le~~i~~ 81 (105)
T cd00632 2 QEQLAQLQQLQQQLQAYIVQRQKVEAQLNENKKALEELEKLADDAEVYKLVGNVLVKQEKEEARTELKERLETIELRIKR 81 (105)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcchHHHHhhhHHhhccHHHHHHHHHHHHHHHHHHHHH
Confidence 67899999999999999999999999999999999999 88888899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 040215 92 LEKEKETVLAQMNELKKILYG 112 (123)
Q Consensus 92 le~~~~~i~~~m~eLK~~LYa 112 (123)
++.+++.+..+|.+||..|-.
T Consensus 82 l~~~~~~l~~~~~elk~~l~~ 102 (105)
T cd00632 82 LERQEEDLQEKLKELQEKIQQ 102 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999998743
No 5
>cd00890 Prefoldin Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=99.41 E-value=7.5e-12 Score=88.89 Aligned_cols=102 Identities=29% Similarity=0.333 Sum_probs=94.7
Q ss_pred HHHHhHHHHhHHhhHHHHHHHHHHHHHhhhhhhhhhhhh-hcC-------------CCccceeeec-ceeeecChhHHHH
Q 040215 12 DQQNINKFSKLNNRFHELEDEIKFAKETNDNLEDAGNEL-ILT-------------DEDIVRFQIG-EVFAHVPREEVEI 76 (123)
Q Consensus 12 DQqkIN~FsrLn~r~~~l~~~l~~~k~~le~L~Da~~El-L~d-------------dd~~i~ykiG-e~Fv~~~~~~a~e 76 (123)
=|+.|+.|++.++++.....+++..+..+..|.++..+. +.. +++.|++.|| .+||.++.++|.+
T Consensus 11 l~~~i~~l~~~~~~l~~~~~e~~~~~~~l~~l~~~~~~~~~l~~~g~~~~~~~~i~~~~~v~v~iG~~~~ve~~~~eA~~ 90 (129)
T cd00890 11 LQQQLEALQQQLQKLEAQLTEYEKAKETLETLKKAEEEKELLVPLGAGLFVKAEVKDDDKVLVDLGTGVYVEKSLEEAIE 90 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCeEEEecCCceEEEEEECCCCEEEEEecCCEEEEecHHHHHH
Confidence 378999999999999999999999999999999999988 553 5567999999 9999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 040215 77 RIEEMKEVNSKTLEKLEKEKETVLAQMNELKKILYGK 113 (123)
Q Consensus 77 ~LE~~~e~~~~ei~~le~~~~~i~~~m~eLK~~LYaK 113 (123)
.|++..+.+++.++.++..+..+..+|..|+..|=.+
T Consensus 91 ~l~~r~~~l~~~~~~l~~~~~~~~~~~~~l~~~l~~~ 127 (129)
T cd00890 91 FLKKRLETLEKQIEKLEKQLEKLQDQITELQEELQQL 127 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999887544
No 6
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=98.75 E-value=3.3e-07 Score=65.20 Aligned_cols=107 Identities=19% Similarity=0.287 Sum_probs=97.4
Q ss_pred cHHHHHHhHHHHhHHhhHHHHHHHHHHHHHhhhhhhhhhhhh-hcCCCccceeeecceeeecChhHHHHHHHHHHHHHHH
Q 040215 9 TWEDQQNINKFSKLNNRFHELEDEIKFAKETNDNLEDAGNEL-ILTDEDIVRFQIGEVFAHVPREEVEIRIEEMKEVNSK 87 (123)
Q Consensus 9 t~EDQqkIN~FsrLn~r~~~l~~~l~~~k~~le~L~Da~~El-L~ddd~~i~ykiGe~Fv~~~~~~a~e~LE~~~e~~~~ 87 (123)
..+=|..|+.|.++..++..+...+..+..++....=+-.|| -+++|.++.-.||-+||..+.++|...|+...+.++.
T Consensus 2 ~~~~q~~~~~~q~~q~~~~~l~~q~~~le~~~~E~~~v~~eL~~l~~d~~vyk~VG~vlv~~~~~e~~~~l~~r~e~ie~ 81 (110)
T TIGR02338 2 PPQVQNQLAQLQQLQQQLQAVATQKQQVEAQLKEAEKALEELERLPDDTPVYKSVGNLLVKTDKEEAIQELKEKKETLEL 81 (110)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcchhHHHhchhhheecHHHHHHHHHHHHHHHHH
Confidence 456789999999999999999999999999999999999999 7777654544599999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 040215 88 TLEKLEKEKETVLAQMNELKKILYGKFR 115 (123)
Q Consensus 88 ei~~le~~~~~i~~~m~eLK~~LYaKFG 115 (123)
.+..|+.+...+..++.++...|..-++
T Consensus 82 ~i~~lek~~~~l~~~l~e~q~~l~~~~~ 109 (110)
T TIGR02338 82 RVKTLQRQEERLREQLKELQEKIQEALA 109 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 9999999999999999999999887553
No 7
>PRK09343 prefoldin subunit beta; Provisional
Probab=98.58 E-value=1.5e-06 Score=63.25 Aligned_cols=108 Identities=19% Similarity=0.269 Sum_probs=96.9
Q ss_pred cccHHHHHHhHHHHhHHhhHHHHHHHHHHHHHhhhhhhhhhhhh-hcCCCccceeeecceeeecChhHHHHHHHHHHHHH
Q 040215 7 VVTWEDQQNINKFSKLNNRFHELEDEIKFAKETNDNLEDAGNEL-ILTDEDIVRFQIGEVFAHVPREEVEIRIEEMKEVN 85 (123)
Q Consensus 7 eVt~EDQqkIN~FsrLn~r~~~l~~~l~~~k~~le~L~Da~~El-L~ddd~~i~ykiGe~Fv~~~~~~a~e~LE~~~e~~ 85 (123)
.+..+=|..|+.|-.+-.++..+...+..+..++...+=+..|| .+++|.+|-=.||-+||..|.++|...|++..+-+
T Consensus 4 ~~~~~~q~~~~~~q~lq~~l~~~~~q~~~le~q~~e~~~~~~EL~~L~~d~~VYk~VG~vlv~qd~~e~~~~l~~r~E~i 83 (121)
T PRK09343 4 NIPPEVQAQLAQLQQLQQQLERLLQQKSQIDLELREINKALEELEKLPDDTPIYKIVGNLLVKVDKTKVEKELKERKELL 83 (121)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcchhHHHhhHHHhhccHHHHHHHHHHHHHHH
Confidence 35677899999999999999999999999999999999999999 77776544444999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 040215 86 SKTLEKLEKEKETVLAQMNELKKILYGKF 114 (123)
Q Consensus 86 ~~ei~~le~~~~~i~~~m~eLK~~LYaKF 114 (123)
+.+|..|+.+...++..+.++...|..-+
T Consensus 84 e~~ik~lekq~~~l~~~l~e~q~~l~~ll 112 (121)
T PRK09343 84 ELRSRTLEKQEKKLREKLKELQAKINEML 112 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999988876544
No 8
>PRK03947 prefoldin subunit alpha; Reviewed
Probab=98.11 E-value=0.00017 Score=52.56 Aligned_cols=101 Identities=20% Similarity=0.253 Sum_probs=83.3
Q ss_pred HHHHHHhHHHHhHHhhHHHHHHHHHHHHHhhhhhhhhhhhh--hcC--CCccceeeec---------------------c
Q 040215 10 WEDQQNINKFSKLNNRFHELEDEIKFAKETNDNLEDAGNEL--ILT--DEDIVRFQIG---------------------E 64 (123)
Q Consensus 10 ~EDQqkIN~FsrLn~r~~~l~~~l~~~k~~le~L~Da~~El--L~d--dd~~i~ykiG---------------------e 64 (123)
.+=|+....|..+......|...+..+...+..+..+...| |.. ++..+.+.|| .
T Consensus 6 ~~l~~l~~~~~~l~~~~~~l~~~~~~l~~~~~e~~~~~e~l~~l~~~~~~~e~lvplg~~~yv~~~v~~~~kV~v~lG~g 85 (140)
T PRK03947 6 QELEELAAQLQALQAQIEALQQQLEELQASINELDTAKETLEELKSKGEGKETLVPIGAGSFVKAKVKDKDKVIVSLGAG 85 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCeEEEEcCCCcEEEEEecCCCeEEEEcCCC
Confidence 44577778888888888888888888888888888887777 432 3335777777 6
Q ss_pred eeeecChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040215 65 VFAHVPREEVEIRIEEMKEVNSKTLEKLEKEKETVLAQMNELKKIL 110 (123)
Q Consensus 65 ~Fv~~~~~~a~e~LE~~~e~~~~ei~~le~~~~~i~~~m~eLK~~L 110 (123)
+||..+.++|.+.|++..+.+.+.++.+...+..+..++..+...|
T Consensus 86 ~~vE~~~~eA~~~l~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~~l 131 (140)
T PRK03947 86 YSAEKDLDEAIEILDKRKEELEKALEKLEEALQKLASRIAQLAQEL 131 (140)
T ss_pred EEEEecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7888999999999999999999999999999999999999888765
No 9
>TIGR00293 prefoldin, archaeal alpha subunit/eukaryotic subunit 5. This model finds a set of small proteins from the Archaea and from Aquifex aeolicus that may represent two orthologous groups. The proteins are predicted to be mostly coiled coil, and may hit large numbers of proteins that contain coiled coil regions.
Probab=97.77 E-value=0.0018 Score=46.31 Aligned_cols=99 Identities=17% Similarity=0.164 Sum_probs=75.3
Q ss_pred HHHhHHHHhHHhhHHHHHHHHHHHHHhhhhhhhhhhhh--hcCC-Cccceeee---------------------cceeee
Q 040215 13 QQNINKFSKLNNRFHELEDEIKFAKETNDNLEDAGNEL--ILTD-EDIVRFQI---------------------GEVFAH 68 (123)
Q Consensus 13 QqkIN~FsrLn~r~~~l~~~l~~~k~~le~L~Da~~El--L~dd-d~~i~yki---------------------Ge~Fv~ 68 (123)
|+.+..+..+-.....+...+..+...+..+..+.+-| |... ...+++.+ +..||.
T Consensus 2 qql~~q~~ql~~~i~~l~~~i~~l~~~i~e~~~~~~~L~~l~~~~~~~~lv~lg~~~~v~~~v~~~~~v~v~iG~g~~vE 81 (126)
T TIGR00293 2 QQLAAELQILQQQVESLQAQIAALRALIAELETAIETLEDLKGAEGKETLVPVGAGSFVKAKVKDTDKVLVSIGSGYYVE 81 (126)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCeEEEEcCCCeEEEEEeCCCCEEEEEcCCCEEEE
Confidence 45566677777777777777777777777777766666 3322 22355544 456777
Q ss_pred cChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040215 69 VPREEVEIRIEEMKEVNSKTLEKLEKEKETVLAQMNELKKILY 111 (123)
Q Consensus 69 ~~~~~a~e~LE~~~e~~~~ei~~le~~~~~i~~~m~eLK~~LY 111 (123)
.+.++|.+.|++..+.+.+.++.++..+..+..++..+-..|=
T Consensus 82 ~~~~eA~~~l~~~~~~l~~~~~~l~~~l~~l~~~~~~i~~~l~ 124 (126)
T TIGR00293 82 KDAEEAIEFLKKRIEELEKAIEKLQEALAELASRAQQLEQEAQ 124 (126)
T ss_pred ecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999877663
No 10
>cd00584 Prefoldin_alpha Prefoldin alpha subunit; Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=97.68 E-value=0.0028 Score=45.46 Aligned_cols=58 Identities=26% Similarity=0.239 Sum_probs=50.4
Q ss_pred cceeeec-ceeeecChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 040215 57 IVRFQIG-EVFAHVPREEVEIRIEEMKEVNSKTLEKLEKEKETVLAQMNELKKILYGKF 114 (123)
Q Consensus 57 ~i~ykiG-e~Fv~~~~~~a~e~LE~~~e~~~~ei~~le~~~~~i~~~m~eLK~~LYaKF 114 (123)
.|...|| .+||.++.++|.+.+.+..+.+++.++.++..+..+..+++.+-..|=.++
T Consensus 70 ~v~v~iG~g~~vE~~~~eA~~~l~~r~~~l~~~~~~l~~~l~~l~~~~~~~~~~l~~~~ 128 (129)
T cd00584 70 KVLVDLGTGYYVEKDLEEAIEFLDKKIEELTKQIEKLQKELAKLKDQINTLEAELQELQ 128 (129)
T ss_pred EEEEEcCCCEEEEecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3556655 689999999999999999999999999999999999999999887765544
No 11
>KOG3478 consensus Prefoldin subunit 6, KE2 family [Posttranslational modification, protein turnover, chaperones]
Probab=97.59 E-value=0.0012 Score=48.45 Aligned_cols=98 Identities=17% Similarity=0.251 Sum_probs=77.6
Q ss_pred HHHhHHHHhHHhhHHHHHHHHHHHHHhhhhhhhhhhhh-hcCCCccceeeecceeeecChhHHHHHHHHHHHHHHHHHHH
Q 040215 13 QQNINKFSKLNNRFHELEDEIKFAKETNDNLEDAGNEL-ILTDEDIVRFQIGEVFAHVPREEVEIRIEEMKEVNSKTLEK 91 (123)
Q Consensus 13 QqkIN~FsrLn~r~~~l~~~l~~~k~~le~L~Da~~El-L~ddd~~i~ykiGe~Fv~~~~~~a~e~LE~~~e~~~~ei~~ 91 (123)
|..+|++..|-......-...+.+..+|..=.=.-.|| |+++|.+|-=.||-+.|..++++|..-..+..+=+.++|..
T Consensus 8 ee~~~kyq~LQk~l~k~~~~rqkle~qL~Enk~V~~Eldlle~d~~VYKliGpvLvkqel~EAr~nV~kRlefI~~Eikr 87 (120)
T KOG3478|consen 8 EEEANKYQNLQKELEKYVESRQKLETQLQENKIVLEELDLLEEDSNVYKLIGPVLVKQELEEARTNVGKRLEFISKEIKR 87 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhcccchHHHHhcchhhHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 44566776666655555555555555665555677899 88887655555999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 040215 92 LEKEKETVLAQMNELKKIL 110 (123)
Q Consensus 92 le~~~~~i~~~m~eLK~~L 110 (123)
+++.+.+++.++..-+..+
T Consensus 88 ~e~~i~d~q~e~~k~R~~v 106 (120)
T KOG3478|consen 88 LENQIRDSQEEFEKQREAV 106 (120)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 9999999999998887654
No 12
>PF02996 Prefoldin: Prefoldin subunit; InterPro: IPR004127 This entry comprises of several prefoldin subunits. Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal alpha subunit, eukaryotic prefoldin subunits 3 and 5 and the UXT (ubiquitously expressed transcript) family. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 1FXK_C 2ZDI_C.
Probab=97.36 E-value=0.004 Score=43.66 Aligned_cols=57 Identities=28% Similarity=0.327 Sum_probs=49.5
Q ss_pred ccceeeec-ceeeecChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040215 56 DIVRFQIG-EVFAHVPREEVEIRIEEMKEVNSKTLEKLEKEKETVLAQMNELKKILYG 112 (123)
Q Consensus 56 ~~i~ykiG-e~Fv~~~~~~a~e~LE~~~e~~~~ei~~le~~~~~i~~~m~eLK~~LYa 112 (123)
+.|...|| .+|+.++.++|.+.+.+....+++.++.+..++..+..++..+-..+-.
T Consensus 59 ~~vlV~lG~~~~vE~s~~eA~~~l~~r~~~l~~~~~~l~~~~~~~~~~~~~~~~~l~~ 116 (120)
T PF02996_consen 59 DKVLVSLGAGYYVEMSLEEAIEFLKKRIKELEEQLEKLEKELAELQAQIEQLEQTLQQ 116 (120)
T ss_dssp TEEEEEEETTEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHH
T ss_pred CEEEEEeeCCeEEEecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35666666 5899999999999999999999999999999999999999888776543
No 13
>PRK14011 prefoldin subunit alpha; Provisional
Probab=97.26 E-value=0.026 Score=42.50 Aligned_cols=105 Identities=19% Similarity=0.200 Sum_probs=79.3
Q ss_pred HHHHHHhHHHHhHHhhHHHHHHHHHHHHHhhhhhhhhhhhh--hcC-------------------CCccceeeec-ceee
Q 040215 10 WEDQQNINKFSKLNNRFHELEDEIKFAKETNDNLEDAGNEL--ILT-------------------DEDIVRFQIG-EVFA 67 (123)
Q Consensus 10 ~EDQqkIN~FsrLn~r~~~l~~~l~~~k~~le~L~Da~~El--L~d-------------------dd~~i~ykiG-e~Fv 67 (123)
.|=|+.+...-.++.+...|...+..++.-...+..+..-| +.. |.+.|..-|| ..||
T Consensus 3 ~elq~~~~~l~~~~~qie~L~~si~~L~~a~~e~~~~ie~L~~l~~~~eiLVPLg~s~yV~g~i~d~dkVlVdIGtGy~V 82 (144)
T PRK14011 3 EELQNQFMALEVYNQQVQKLQEELSSIDMMKMELLKSIESMEGLKTSEEILIPLGPGAFLKAKIVDPDKAILGVGSDIYL 82 (144)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCeEEEEcCCCcEEeEEecCCCeEEEEccCCeEE
Confidence 45577777777777777777777777766555554444333 211 2234555565 4789
Q ss_pred ecChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 040215 68 HVPREEVEIRIEEMKEVNSKTLEKLEKEKETVLAQMNELKKILYGKF 114 (123)
Q Consensus 68 ~~~~~~a~e~LE~~~e~~~~ei~~le~~~~~i~~~m~eLK~~LYaKF 114 (123)
..+.++|.+.+++..+.+++..+.|...+.++...+.+|...|=+|+
T Consensus 83 Ek~~~eA~~~~~~ri~~l~~~~~~l~~~i~~~~~~~~~l~~~L~~k~ 129 (144)
T PRK14011 83 EKDVSEVIEDFKKSVEELDKTKKEGNKKIEELNKEITKLRKELEKRA 129 (144)
T ss_pred EecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999998887764
No 14
>cd00890 Prefoldin Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=96.31 E-value=0.07 Score=37.49 Aligned_cols=98 Identities=23% Similarity=0.300 Sum_probs=79.8
Q ss_pred HHHhHHHHhHHhhHHHHHHHHHHHHHhhhhhhhhhhhh-hcCC--Ccccee--------------eecceeeecC-hhHH
Q 040215 13 QQNINKFSKLNNRFHELEDEIKFAKETNDNLEDAGNEL-ILTD--EDIVRF--------------QIGEVFAHVP-REEV 74 (123)
Q Consensus 13 QqkIN~FsrLn~r~~~l~~~l~~~k~~le~L~Da~~El-L~dd--d~~i~y--------------kiGe~Fv~~~-~~~a 74 (123)
|+.+..+..+..++..+...+..+...+..+..+-++| -+.+ ++..+. .-+.|+|++. .--+
T Consensus 2 ~~l~~~~~~l~~~i~~l~~~~~~l~~~~~e~~~~~~~l~~l~~~~~~~~~l~~~g~~~~~~~~i~~~~~v~v~iG~~~~v 81 (129)
T cd00890 2 QELAAQLQQLQQQLEALQQQLQKLEAQLTEYEKAKETLETLKKAEEEKELLVPLGAGLFVKAEVKDDDKVLVDLGTGVYV 81 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCeEEEecCCceEEEEEECCCCEEEEEecCCEEE
Confidence 56677888899999999999999999999999999999 4442 222222 3566888888 5566
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040215 75 EIRIEEMKEVNSKTLEKLEKEKETVLAQMNELKKIL 110 (123)
Q Consensus 75 ~e~LE~~~e~~~~ei~~le~~~~~i~~~m~eLK~~L 110 (123)
.--+++..+-++.+++.++..++.+...+..+..++
T Consensus 82 e~~~~eA~~~l~~r~~~l~~~~~~l~~~~~~~~~~~ 117 (129)
T cd00890 82 EKSLEEAIEFLKKRLETLEKQIEKLEKQLEKLQDQI 117 (129)
T ss_pred EecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 778899999999999999999999999999998765
No 15
>COG1730 GIM5 Predicted prefoldin, molecular chaperone implicated in de novo protein folding [Posttranslational modification, protein turnover, chaperones]
Probab=94.69 E-value=1.4 Score=33.38 Aligned_cols=54 Identities=20% Similarity=0.256 Sum_probs=46.0
Q ss_pred cceeeecc-eeeecChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040215 57 IVRFQIGE-VFAHVPREEVEIRIEEMKEVNSKTLEKLEKEKETVLAQMNELKKIL 110 (123)
Q Consensus 57 ~i~ykiGe-~Fv~~~~~~a~e~LE~~~e~~~~ei~~le~~~~~i~~~m~eLK~~L 110 (123)
.+...||. .++..+.++|.+.|.+.++.+.+.+..++..+.++..++..|-..+
T Consensus 77 kviV~iGsg~~ae~~~~eAie~l~k~~~~l~~~~~~l~~~l~~l~~~~~~l~~~~ 131 (145)
T COG1730 77 KVIVSIGSGYYAEKSADEAIEFLKKRIEELEKAIEKLQQALAELAQRIEQLEQEA 131 (145)
T ss_pred eEEEEcCCceeeeecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555653 6788999999999999999999999999999999999998886654
No 16
>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones]
Probab=94.39 E-value=0.28 Score=36.17 Aligned_cols=98 Identities=17% Similarity=0.133 Sum_probs=80.3
Q ss_pred cccHHHHHHhHHHHhHHhhHHHHHHHHHHHHHhhhhhhhhhhh--h-hcCCCccceeeecceeeecChhHHHHHHHHHHH
Q 040215 7 VVTWEDQQNINKFSKLNNRFHELEDEIKFAKETNDNLEDAGNE--L-ILTDEDIVRFQIGEVFAHVPREEVEIRIEEMKE 83 (123)
Q Consensus 7 eVt~EDQqkIN~FsrLn~r~~~l~~~l~~~k~~le~L~Da~~E--l-L~ddd~~i~ykiGe~Fv~~~~~~a~e~LE~~~e 83 (123)
+.....|+..+.++.+..++..++.+|+..++-++.|+.+.++ + -.-++ +.++.--.=+.-..++=.+.|+-...
T Consensus 10 ~~l~q~QqLq~ql~~~~~qk~~le~qL~E~~~al~Ele~l~eD~~vYk~VG~--llvk~~k~~~~~eL~er~E~Le~ri~ 87 (119)
T COG1382 10 AQLAQLQQLQQQLQKVILQKQQLEAQLKEIEKALEELEKLDEDAPVYKKVGN--LLVKVSKEEAVDELEERKETLELRIK 87 (119)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccHHHHHhhh--HHhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 4567899999999999999999999999999988888887766 3 32332 55555555566677888899999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 040215 84 VNSKTLEKLEKEKETVLAQMNEL 106 (123)
Q Consensus 84 ~~~~ei~~le~~~~~i~~~m~eL 106 (123)
.+++..+.+++++++++..+...
T Consensus 88 tLekQe~~l~e~l~eLq~~i~~~ 110 (119)
T COG1382 88 TLEKQEEKLQERLEELQSEIQKA 110 (119)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999887653
No 17
>KOG3501 consensus Molecular chaperone Prefoldin, subunit 1 [Posttranslational modification, protein turnover, chaperones]
Probab=94.24 E-value=0.35 Score=35.27 Aligned_cols=88 Identities=18% Similarity=0.280 Sum_probs=60.1
Q ss_pred HHHHhHHhhHHHHHH-------HHHHHHHhhhhhhhhhhhhhcCCCccceee-ecceeeecChhHHHHHHHHHHHHHHHH
Q 040215 17 NKFSKLNNRFHELED-------EIKFAKETNDNLEDAGNELILTDEDIVRFQ-IGEVFAHVPREEVEIRIEEMKEVNSKT 88 (123)
Q Consensus 17 N~FsrLn~r~~~l~~-------~l~~~k~~le~L~Da~~ElL~ddd~~i~yk-iGe~Fv~~~~~~a~e~LE~~~e~~~~e 88 (123)
|.||.|-.+..+-.. +++.+...+.-..-+..|++.+.|++-+|. +|--||.-|..-...++++......+.
T Consensus 3 kaf~~lQ~K~~dtqq~~~~~~vQi~~~nr~kk~~~l~~ke~~~~~de~~~Y~svgrmF~l~dk~a~~s~leak~k~see~ 82 (114)
T KOG3501|consen 3 KAFSQLQEKAVDTQQQLRTIMVQIAAKNRAKKISELAKKELEDVGDEKAVYTSVGRMFMLSDKAAVRSHLEAKMKSSEEK 82 (114)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCcHHHHHHHHHHHHHhHHHH
Confidence 345555544444333 444455555555667778744444455554 999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHH
Q 040215 89 LEKLEKEKETVLAQMN 104 (123)
Q Consensus 89 i~~le~~~~~i~~~m~ 104 (123)
|+.|+.+-+=++...+
T Consensus 83 IeaLqkkK~YlEk~v~ 98 (114)
T KOG3501|consen 83 IEALQKKKTYLEKTVS 98 (114)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9988877665554443
No 18
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=92.89 E-value=1.2 Score=33.89 Aligned_cols=68 Identities=26% Similarity=0.378 Sum_probs=42.5
Q ss_pred hHHHHhHHhhHHHHHHHHHHHHHhhhhhhhhhhhhhcCCCccceeeecceeeecChhHHHHHHHHHHHHHHHHHHHHHHH
Q 040215 16 INKFSKLNNRFHELEDEIKFAKETNDNLEDAGNELILTDEDIVRFQIGEVFAHVPREEVEIRIEEMKEVNSKTLEKLEKE 95 (123)
Q Consensus 16 IN~FsrLn~r~~~l~~~l~~~k~~le~L~Da~~ElL~ddd~~i~ykiGe~Fv~~~~~~a~e~LE~~~e~~~~ei~~le~~ 95 (123)
|+++..+..++..+++.++..+++.+....+...+ .....+....+++++..+
T Consensus 117 I~r~~~li~~l~~~~~~~~~~~kq~~~~~~~~~~~---------------------------~~~~~~~~~~ei~~lk~e 169 (192)
T PF05529_consen 117 IRRVHSLIKELIKLEEKLEALKKQAESASEAAEKL---------------------------LKEENKKLSEEIEKLKKE 169 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhh---------------------------hhhhhhhhHHHHHHHHHH
Confidence 56666666677777777776666665544433322 444555666667777777
Q ss_pred HHHHHHHHHHHHHHH
Q 040215 96 KETVLAQMNELKKIL 110 (123)
Q Consensus 96 ~~~i~~~m~eLK~~L 110 (123)
++..+.++..||++.
T Consensus 170 l~~~~~~~~~LkkQ~ 184 (192)
T PF05529_consen 170 LEKKEKEIEALKKQS 184 (192)
T ss_pred HHHHHHHHHHHHHHH
Confidence 777777777777653
No 19
>KOG4098 consensus Molecular chaperone Prefoldin, subunit 2 [Posttranslational modification, protein turnover, chaperones]
Probab=91.83 E-value=3.2 Score=31.38 Aligned_cols=102 Identities=20% Similarity=0.179 Sum_probs=78.6
Q ss_pred ccccHHHHHHhHHHHhHHhhHHHHHHHHHHHHHhhhhhhhhhhhh-hcCCCcccee-eecceeeecChhHHHHHHHHHHH
Q 040215 6 TVVTWEDQQNINKFSKLNNRFHELEDEIKFAKETNDNLEDAGNEL-ILTDEDIVRF-QIGEVFAHVPREEVEIRIEEMKE 83 (123)
Q Consensus 6 veVt~EDQqkIN~FsrLn~r~~~l~~~l~~~k~~le~L~Da~~El-L~ddd~~i~y-kiGe~Fv~~~~~~a~e~LE~~~e 83 (123)
...-..-|.-++.|-.|-+++..|-..+-.+..++..-.=.-+=| =+|.+- -.| .||.+.|.-+.-++.=-|+..++
T Consensus 11 ~~~~~~q~~v~a~yn~~r~el~~ia~ki~~LE~d~~EH~lVi~tlk~~dp~R-KCfRmIgGvLVErTVkeVlP~L~~nke 89 (140)
T KOG4098|consen 11 AKEPSSQQAVVAKYNALRSELQQIASKITDLEMDLREHKLVIETLKDLDPTR-KCFRMIGGVLVERTVKEVLPILQTNKE 89 (140)
T ss_pred ccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhcChhh-HHHHHhccchhhhhHHHHhHHHHhhHH
Confidence 344556778889999888888888887777776665544343333 334432 444 49999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 040215 84 VNSKTLEKLEKEKETVLAQMNELKK 108 (123)
Q Consensus 84 ~~~~ei~~le~~~~~i~~~m~eLK~ 108 (123)
-++.-|..|...+.....+++.-|+
T Consensus 90 ~i~~~i~~l~~qL~~k~kElnkfk~ 114 (140)
T KOG4098|consen 90 NIEKVIKKLTDQLVQKGKELNKFKK 114 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999888888775
No 20
>PF02996 Prefoldin: Prefoldin subunit; InterPro: IPR004127 This entry comprises of several prefoldin subunits. Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal alpha subunit, eukaryotic prefoldin subunits 3 and 5 and the UXT (ubiquitously expressed transcript) family. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 1FXK_C 2ZDI_C.
Probab=91.05 E-value=1.1 Score=31.21 Aligned_cols=48 Identities=25% Similarity=0.367 Sum_probs=37.9
Q ss_pred cceeeecChhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040215 63 GEVFAHVPREE-VEIRIEEMKEVNSKTLEKLEKEKETVLAQMNELKKIL 110 (123)
Q Consensus 63 Ge~Fv~~~~~~-a~e~LE~~~e~~~~ei~~le~~~~~i~~~m~eLK~~L 110 (123)
+.+||++...- ++--++++.+-++.++..++..++.+...+..++.++
T Consensus 59 ~~vlV~lG~~~~vE~s~~eA~~~l~~r~~~l~~~~~~l~~~~~~~~~~~ 107 (120)
T PF02996_consen 59 DKVLVSLGAGYYVEMSLEEAIEFLKKRIKELEEQLEKLEKELAELQAQI 107 (120)
T ss_dssp TEEEEEEETTEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CEEEEEeeCCeEEEecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555443 2456899999999999999999999999999998765
No 21
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=91.02 E-value=1.8 Score=30.50 Aligned_cols=91 Identities=18% Similarity=0.149 Sum_probs=70.9
Q ss_pred HHhHHhhHHHHHHHHHHHHHhhhhhhhhhhhh-hcCCCc-cceeeecceeeecChhHHHHHHHHHHHHHHHHHHHHHHHH
Q 040215 19 FSKLNNRFHELEDEIKFAKETNDNLEDAGNEL-ILTDED-IVRFQIGEVFAHVPREEVEIRIEEMKEVNSKTLEKLEKEK 96 (123)
Q Consensus 19 FsrLn~r~~~l~~~l~~~k~~le~L~Da~~El-L~ddd~-~i~ykiGe~Fv~~~~~~a~e~LE~~~e~~~~ei~~le~~~ 96 (123)
+-.+-+++..+..++...-..+..|+--..|. ++.++= .++ -=+.||-.+..--+..-.+.....+.++++.++..+
T Consensus 5 ~q~~~~~~q~~q~~~~~l~~q~~~le~~~~E~~~v~~eL~~l~-~d~~vyk~VG~vlv~~~~~e~~~~l~~r~e~ie~~i 83 (110)
T TIGR02338 5 VQNQLAQLQQLQQQLQAVATQKQQVEAQLKEAEKALEELERLP-DDTPVYKSVGNLLVKTDKEEAIQELKEKKETLELRV 83 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-CcchhHHHhchhhheecHHHHHHHHHHHHHHHHHHH
Confidence 34556777888888888888888888888888 766532 232 356678888888888888888888888888888888
Q ss_pred HHHHHHHHHHHHHH
Q 040215 97 ETVLAQMNELKKIL 110 (123)
Q Consensus 97 ~~i~~~m~eLK~~L 110 (123)
+.+..++..|...+
T Consensus 84 ~~lek~~~~l~~~l 97 (110)
T TIGR02338 84 KTLQRQEERLREQL 97 (110)
T ss_pred HHHHHHHHHHHHHH
Confidence 88888888887765
No 22
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=90.74 E-value=1.5 Score=30.51 Aligned_cols=85 Identities=19% Similarity=0.173 Sum_probs=40.5
Q ss_pred hhHHHHHHHHHHHHHhhhhhhhhhhhh-hcCCCc-cceeeecceeeecChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040215 24 NRFHELEDEIKFAKETNDNLEDAGNEL-ILTDED-IVRFQIGEVFAHVPREEVEIRIEEMKEVNSKTLEKLEKEKETVLA 101 (123)
Q Consensus 24 ~r~~~l~~~l~~~k~~le~L~Da~~El-L~ddd~-~i~ykiGe~Fv~~~~~~a~e~LE~~~e~~~~ei~~le~~~~~i~~ 101 (123)
.++..+..++..+-..+..|+.-..|. ++-++- .++ -=+.||..+..--+..-.+.....+..+++.++.+++.+..
T Consensus 6 ~~~q~l~~~~~~l~~~~~~l~~~~~E~~~v~~EL~~l~-~d~~vy~~VG~vfv~~~~~ea~~~Le~~~e~le~~i~~l~~ 84 (105)
T cd00632 6 AQLQQLQQQLQAYIVQRQKVEAQLNENKKALEELEKLA-DDAEVYKLVGNVLVKQEKEEARTELKERLETIELRIKRLER 84 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-CcchHHHHhhhHHhhccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555555555555555555555 433321 111 23344444444444555555555555555555555555555
Q ss_pred HHHHHHHH
Q 040215 102 QMNELKKI 109 (123)
Q Consensus 102 ~m~eLK~~ 109 (123)
.+..|-+.
T Consensus 85 ~~~~l~~~ 92 (105)
T cd00632 85 QEEDLQEK 92 (105)
T ss_pred HHHHHHHH
Confidence 55554443
No 23
>PF01920 Prefoldin_2: Prefoldin subunit; InterPro: IPR002777 Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal beta subunit, eukaryotic prefoldin subunits 1, 2, 4 and 6. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 2ZDI_B 3AEI_B 2ZQM_A 1FXK_A.
Probab=86.19 E-value=6.4 Score=26.46 Aligned_cols=88 Identities=19% Similarity=0.202 Sum_probs=58.8
Q ss_pred hHHHHhHHhhHHHHHHHHHHHHHhhhhhhhhhhh--h-hcCCCccceeeecceeeecChhHHHHHHHHHHHHHHHHHHHH
Q 040215 16 INKFSKLNNRFHELEDEIKFAKETNDNLEDAGNE--L-ILTDEDIVRFQIGEVFAHVPREEVEIRIEEMKEVNSKTLEKL 92 (123)
Q Consensus 16 IN~FsrLn~r~~~l~~~l~~~k~~le~L~Da~~E--l-L~ddd~~i~ykiGe~Fv~~~~~~a~e~LE~~~e~~~~ei~~l 92 (123)
=..+..+++++..++.++.....-++.|..+.++ + ..-++.-|..... -+.-..+.-.+.++...+.+.+.+..+
T Consensus 11 ~~~l~~~~~q~~~l~~~~~~~~~~~~eL~~l~~~~~~y~~vG~~fv~~~~~--~~~~~L~~~~~~~~~~i~~l~~~~~~l 88 (106)
T PF01920_consen 11 NQQLQQLEQQIQQLERQLRELELTLEELEKLDDDRKVYKSVGKMFVKQDKE--EAIEELEERIEKLEKEIKKLEKQLKYL 88 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSTT-EEEEEETTEEEEEEHH--HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHhHHHHHhhHH--HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456777777888877777777777777777666 4 3334322333333 344555666777788888888888888
Q ss_pred HHHHHHHHHHHHH
Q 040215 93 EKEKETVLAQMNE 105 (123)
Q Consensus 93 e~~~~~i~~~m~e 105 (123)
+.++.+++..+.+
T Consensus 89 ~~~l~~~~~~l~~ 101 (106)
T PF01920_consen 89 EKKLKELKKKLYE 101 (106)
T ss_dssp HHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHH
Confidence 8888887777653
No 24
>PRK09343 prefoldin subunit beta; Provisional
Probab=84.56 E-value=7.9 Score=27.91 Aligned_cols=48 Identities=19% Similarity=0.138 Sum_probs=32.3
Q ss_pred ecChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 040215 68 HVPREEVEIRIEEMKEVNSKTLEKLEKEKETVLAQMNELKKILYGKFR 115 (123)
Q Consensus 68 ~~~~~~a~e~LE~~~e~~~~ei~~le~~~~~i~~~m~eLK~~LYaKFG 115 (123)
.-+.+.-.+.++...+.+++....++.++.+++..+.++-..+|.+=|
T Consensus 73 ~~~l~~r~E~ie~~ik~lekq~~~l~~~l~e~q~~l~~ll~~~~~~~~ 120 (121)
T PRK09343 73 EKELKERKELLELRSRTLEKQEKKLREKLKELQAKINEMLSKYYPQGG 120 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCC
Confidence 344555666666777777777777777777777777777766666544
No 25
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=82.34 E-value=17 Score=28.45 Aligned_cols=83 Identities=25% Similarity=0.310 Sum_probs=44.7
Q ss_pred HhhHHHHHHHHHHHHHhhhhhhhhhhhhhcCCCccceeeecceeeecChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040215 23 NNRFHELEDEIKFAKETNDNLEDAGNELILTDEDIVRFQIGEVFAHVPREEVEIRIEEMKEVNSKTLEKLEKEKETVLAQ 102 (123)
Q Consensus 23 n~r~~~l~~~l~~~k~~le~L~Da~~ElL~ddd~~i~ykiGe~Fv~~~~~~a~e~LE~~~e~~~~ei~~le~~~~~i~~~ 102 (123)
|+++..+...+..++...+.|..-.+++|..+... ...-..........+......+...++.+..++...+.+
T Consensus 19 ~~~L~~~~~~l~~~~~~~~~l~~~i~~~l~~~~~~------~~~~~~~~~~~~~~~~~r~~~l~~~i~~~~~~i~~~r~~ 92 (302)
T PF10186_consen 19 NNRLLELRSELQQLKEENEELRRRIEEILESDSNG------QLLEIQQLKREIEELRERLERLRERIERLRKRIEQKRER 92 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677777778888888888887777775433221 111111112223333444445555555555555555555
Q ss_pred HHHHHHHHH
Q 040215 103 MNELKKILY 111 (123)
Q Consensus 103 m~eLK~~LY 111 (123)
+.++|..|-
T Consensus 93 l~~~~~~l~ 101 (302)
T PF10186_consen 93 LEELRESLE 101 (302)
T ss_pred HHHHHHHHH
Confidence 555555544
No 26
>PF13758 Prefoldin_3: Prefoldin subunit
Probab=82.09 E-value=6.8 Score=28.07 Aligned_cols=47 Identities=21% Similarity=0.214 Sum_probs=40.2
Q ss_pred cceeeecc-eeeecChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040215 57 IVRFQIGE-VFAHVPREEVEIRIEEMKEVNSKTLEKLEKEKETVLAQM 103 (123)
Q Consensus 57 ~i~ykiGe-~Fv~~~~~~a~e~LE~~~e~~~~ei~~le~~~~~i~~~m 103 (123)
.|...+|+ ..+.=+.+++...|.....-++..|..|+.+++.-+.++
T Consensus 51 Ei~~ilG~~~~i~Rt~~Qvv~~l~RRiDYV~~Ni~tleKql~~aE~kl 98 (99)
T PF13758_consen 51 EIKEILGEGQGITRTREQVVDVLSRRIDYVQQNIETLEKQLEAAENKL 98 (99)
T ss_pred HHHHHhCCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 47777887 566788999999999999999999999999998877654
No 27
>PRK01203 prefoldin subunit alpha; Provisional
Probab=81.67 E-value=19 Score=26.78 Aligned_cols=51 Identities=25% Similarity=0.337 Sum_probs=45.1
Q ss_pred cceeeec-ceeeecChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040215 57 IVRFQIG-EVFAHVPREEVEIRIEEMKEVNSKTLEKLEKEKETVLAQMNELK 107 (123)
Q Consensus 57 ~i~ykiG-e~Fv~~~~~~a~e~LE~~~e~~~~ei~~le~~~~~i~~~m~eLK 107 (123)
.|..-|| ..||..+.+++.+.|.+..++++.-+......+..+...+++|-
T Consensus 70 kVlVdIGTGy~VEK~~e~kie~L~~~ie~Le~~i~~K~~~l~~i~~~~~~l~ 121 (130)
T PRK01203 70 DLIVPIGSGVYIAEERERTIERLKENLEDLKDSIQKLNDQRKTLVDQYNTVY 121 (130)
T ss_pred eEEEEcCCCeEEEecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555565 47899999999999999999999999999999999999999886
No 28
>PRK02224 chromosome segregation protein; Provisional
Probab=80.50 E-value=23 Score=32.49 Aligned_cols=82 Identities=21% Similarity=0.137 Sum_probs=45.6
Q ss_pred HHHHHHHHHHHHHhhhhhhhhhhhh--hcCCCccceeeecceeeecChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040215 26 FHELEDEIKFAKETNDNLEDAGNEL--ILTDEDIVRFQIGEVFAHVPREEVEIRIEEMKEVNSKTLEKLEKEKETVLAQM 103 (123)
Q Consensus 26 ~~~l~~~l~~~k~~le~L~Da~~El--L~ddd~~i~ykiGe~Fv~~~~~~a~e~LE~~~e~~~~ei~~le~~~~~i~~~m 103 (123)
+..+...+...+..+..+..+-.++ ++.+ .....+|-.|=.-+.......+......+...++.++.+++++....
T Consensus 421 ~~~l~~~~~~~~~~~~~~~~~l~~~~~~l~~--~~Cp~C~r~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~ 498 (880)
T PRK02224 421 RDELREREAELEATLRTARERVEEAEALLEA--GKCPECGQPVEGSPHVETIEEDRERVEELEAELEDLEEEVEEVEERL 498 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--ccCCCCCCcCCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333334444444444455554444 2222 24455777665555555555566666666667777777777777666
Q ss_pred HHHHHH
Q 040215 104 NELKKI 109 (123)
Q Consensus 104 ~eLK~~ 109 (123)
..|+..
T Consensus 499 e~l~~~ 504 (880)
T PRK02224 499 ERAEDL 504 (880)
T ss_pred HHHHHH
Confidence 655544
No 29
>PF06632 XRCC4: DNA double-strand break repair and V(D)J recombination protein XRCC4; InterPro: IPR010585 This entry represents the DNA double-strand break repair and V(D)J recombination protein XRCC4, which is found in certain Metazoans, fungi and plants. XRCC4 binds to DNA, and to DNA ligase IV (LIG4) to form the LIG4-XRCC4 complex []. The LIG4-XRCC4 complex is responsible for the ligation step in the non-homologous end joining (NHEJ) pathway of DNA double-strand break repair. XRCC4 enhances the joining activity of LIG4. It is thought that XRCC4 and LIG4 are essential for alignment-based gap filling, as well as for final ligation of the breaks []. Binding of the LIG4-XRCC4 complex to DNA ends is dependent on the assembly of the DNA-dependent protein kinase complex DNA-PK to these DNA ends. ; GO: 0003677 DNA binding, 0006302 double-strand break repair, 0006310 DNA recombination, 0005634 nucleus; PDB: 3RWR_R 1IK9_B 3SR2_E 3Q4F_H 3II6_B 1FU1_A 3MUD_B.
Probab=79.43 E-value=8.9 Score=32.66 Aligned_cols=38 Identities=26% Similarity=0.337 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 040215 77 RIEEMKEVNSKTLEKLEKEKETVLAQMNELKKILYGKF 114 (123)
Q Consensus 77 ~LE~~~e~~~~ei~~le~~~~~i~~~m~eLK~~LYaKF 114 (123)
+|....+.+..+..++..+++.+-..-.++=..||+||
T Consensus 148 ~L~~enerL~~e~~~~~~qlE~~v~~K~~~E~~L~~KF 185 (342)
T PF06632_consen 148 HLQKENERLESEANKLLKQLEKFVNAKEEHEEDLYAKF 185 (342)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444556666777777777777777777888999999
No 30
>PF08286 Spc24: Spc24 subunit of Ndc80; InterPro: IPR013252 Spc24 is a component of the evolutionarily conserved kinetochore-associated Ndc80 complex and is involved in chromosome segregation [].; PDB: 2VE7_D 2FV4_B 2FTX_B.
Probab=79.25 E-value=0.82 Score=32.69 Aligned_cols=48 Identities=33% Similarity=0.298 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------HHHHHHHhcCCCCCcCC
Q 040215 73 EVEIRIEEMKEVNSKTLEKLEKEKETVLAQMNE----------------LKKILYGKFRDSINLEE 122 (123)
Q Consensus 73 ~a~e~LE~~~e~~~~ei~~le~~~~~i~~~m~e----------------LK~~LYaKFG~~INLE~ 122 (123)
.+...||.....++.++++|..++.++..+..+ ||-+||...| |-++.
T Consensus 13 K~~~~LE~~l~~l~~el~~L~~~l~eLe~~~~~~~~~~~~~~~~~d~~vlklkLYrsLG--I~~e~ 76 (118)
T PF08286_consen 13 KELSDLESELESLQSELEELKEELEELEEQEVEGEEVDEDTTEEIDSNVLKLKLYRSLG--IELEY 76 (118)
T ss_dssp ------------------------------HT------CCCCCHHCCCHHHHHHHHHCC--EEEEC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccccCcccchHHHHHHHHHhCc--EEEEe
Confidence 445566777777777777777777777777766 8999999999 77654
No 31
>PRK03918 chromosome segregation protein; Provisional
Probab=79.03 E-value=39 Score=30.94 Aligned_cols=83 Identities=19% Similarity=0.216 Sum_probs=42.7
Q ss_pred HhhHHHHHHHHHHHHHhhhhhhhhhhhh-hcCCCccceeeecceeeecChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040215 23 NNRFHELEDEIKFAKETNDNLEDAGNEL-ILTDEDIVRFQIGEVFAHVPREEVEIRIEEMKEVNSKTLEKLEKEKETVLA 101 (123)
Q Consensus 23 n~r~~~l~~~l~~~k~~le~L~Da~~El-L~ddd~~i~ykiGe~Fv~~~~~~a~e~LE~~~e~~~~ei~~le~~~~~i~~ 101 (123)
+.++..+...+...+..+..|.....+| =..+-+|+ +|.-.-.....++....+...+.+..++..+..++..+..
T Consensus 404 ~~~i~~l~~~~~~~~~~i~eL~~~l~~L~~~~~~Cp~---c~~~L~~~~~~el~~~~~~ei~~l~~~~~~l~~~~~~l~~ 480 (880)
T PRK03918 404 EEEISKITARIGELKKEIKELKKAIEELKKAKGKCPV---CGRELTEEHRKELLEEYTAELKRIEKELKEIEEKERKLRK 480 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCC---CCCcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344444444444444444444333 22222222 3443333333344456777777777788877777777777
Q ss_pred HHHHHHH
Q 040215 102 QMNELKK 108 (123)
Q Consensus 102 ~m~eLK~ 108 (123)
+...++.
T Consensus 481 ~~~~~~~ 487 (880)
T PRK03918 481 ELRELEK 487 (880)
T ss_pred HHHHHHH
Confidence 6666543
No 32
>cd00584 Prefoldin_alpha Prefoldin alpha subunit; Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=78.99 E-value=9.8 Score=26.95 Aligned_cols=97 Identities=22% Similarity=0.281 Sum_probs=68.2
Q ss_pred HHhHHHHhHHhhHHHHHHHHHHHHHhhhhhhhhhhhh--hcC--CCccceeee-------------cceeeecChhHH-H
Q 040215 14 QNINKFSKLNNRFHELEDEIKFAKETNDNLEDAGNEL--ILT--DEDIVRFQI-------------GEVFAHVPREEV-E 75 (123)
Q Consensus 14 qkIN~FsrLn~r~~~l~~~l~~~k~~le~L~Da~~El--L~d--dd~~i~yki-------------Ge~Fv~~~~~~a-~ 75 (123)
+.+-....+...+..+..++..+...+..++.+-..| |.. .+..++..| +.++|++...-. .
T Consensus 3 ~l~~~~~~l~~~i~~l~~~~~~l~~~~~e~~~~~~~l~~l~~~~~~~~~lvplg~~~~~~~~i~~~~~v~v~iG~g~~vE 82 (129)
T cd00584 3 QLAAQLQVLQQEIEELQQELARLNEAIAEYEQAKETLETLKKADEGKETLVPLGAGVFVKAKVKDTDKVLVDLGTGYYVE 82 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCeEEeEEeCCCCEEEEEcCCCEEEE
Confidence 3444555666677777777777777777777777666 332 122244444 455666666543 5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040215 76 IRIEEMKEVNSKTLEKLEKEKETVLAQMNELKKIL 110 (123)
Q Consensus 76 e~LE~~~e~~~~ei~~le~~~~~i~~~m~eLK~~L 110 (123)
--+++..+-++.+++.|+..++.+...+..|+.++
T Consensus 83 ~~~~eA~~~l~~r~~~l~~~~~~l~~~l~~l~~~~ 117 (129)
T cd00584 83 KDLEEAIEFLDKKIEELTKQIEKLQKELAKLKDQI 117 (129)
T ss_pred ecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56888999999999999999999999999998765
No 33
>PRK03947 prefoldin subunit alpha; Reviewed
Probab=78.77 E-value=12 Score=27.00 Aligned_cols=91 Identities=20% Similarity=0.286 Sum_probs=51.1
Q ss_pred HhHHhhHHHHHHHHHHHHHhhhhhhhhhhhh-hcCCC-cccee--eecceeeecChh-----------H----------H
Q 040215 20 SKLNNRFHELEDEIKFAKETNDNLEDAGNEL-ILTDE-DIVRF--QIGEVFAHVPRE-----------E----------V 74 (123)
Q Consensus 20 srLn~r~~~l~~~l~~~k~~le~L~Da~~El-L~ddd-~~i~y--kiGe~Fv~~~~~-----------~----------a 74 (123)
-.|...+..+..++..+...+..|..+..|+ -+-+. +.++= .-++++|.++.. . +
T Consensus 9 ~~l~~~~~~l~~~~~~l~~~~~~l~~~~~e~~~~~e~l~~l~~~~~~~e~lvplg~~~yv~~~v~~~~kV~v~lG~g~~v 88 (140)
T PRK03947 9 EELAAQLQALQAQIEALQQQLEELQASINELDTAKETLEELKSKGEGKETLVPIGAGSFVKAKVKDKDKVIVSLGAGYSA 88 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCeEEEEcCCCcEEEEEecCCCeEEEEcCCCEEE
Confidence 3445555666666666666666666666666 33320 01111 345566666531 1 1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040215 75 EIRIEEMKEVNSKTLEKLEKEKETVLAQMNELKKIL 110 (123)
Q Consensus 75 ~e~LE~~~e~~~~ei~~le~~~~~i~~~m~eLK~~L 110 (123)
.--+++..+-+++.++.|+..++.+...+..++..+
T Consensus 89 E~~~~eA~~~l~~~~~~l~~~~~~l~~~l~~~~~~~ 124 (140)
T PRK03947 89 EKDLDEAIEILDKRKEELEKALEKLEEALQKLASRI 124 (140)
T ss_pred EecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 125566666677777777777777777666666553
No 34
>PHA03030 hypothetical protein; Provisional
Probab=76.61 E-value=4.8 Score=29.49 Aligned_cols=32 Identities=31% Similarity=0.432 Sum_probs=28.6
Q ss_pred HHHHHhHHH---HhHHhhHHHHHHHHHHHHHhhhh
Q 040215 11 EDQQNINKF---SKLNNRFHELEDEIKFAKETNDN 42 (123)
Q Consensus 11 EDQqkIN~F---srLn~r~~~l~~~l~~~k~~le~ 42 (123)
=||..||+| +.++.|..++++++..++-++..
T Consensus 50 ~dn~lInKfIqD~iieTRikeiEeeieniiSeLnd 84 (122)
T PHA03030 50 FDNDLINKFIQDMIIETRIKEIEEEIENIISELND 84 (122)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 389999999 67999999999999999888766
No 35
>PRK01156 chromosome segregation protein; Provisional
Probab=76.39 E-value=27 Score=32.28 Aligned_cols=43 Identities=7% Similarity=0.063 Sum_probs=19.5
Q ss_pred cceeeecChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040215 63 GEVFAHVPREEVEIRIEEMKEVNSKTLEKLEKEKETVLAQMNEL 106 (123)
Q Consensus 63 Ge~Fv~~~~~~a~e~LE~~~e~~~~ei~~le~~~~~i~~~m~eL 106 (123)
|-|=++.+... ++...........++..++.++.++..+...|
T Consensus 453 ~~Cp~c~~~~~-~e~~~e~i~~~~~~i~~l~~~i~~l~~~~~~l 495 (895)
T PRK01156 453 SVCPVCGTTLG-EEKSNHIINHYNEKKSRLEEKIREIEIEVKDI 495 (895)
T ss_pred CCCCCCCCcCC-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444433 44444444455555555555554444444333
No 36
>PF08199 E2: Bacteriophage E2-like protein; InterPro: IPR013184 This is a family of short conserved proteins of 37 amino acids, described in Lactococcus phage c2 and in related phage. The function of these proteins is unknown.
Probab=76.29 E-value=0.84 Score=26.96 Aligned_cols=13 Identities=38% Similarity=0.825 Sum_probs=10.4
Q ss_pred HHHHHHHhcCCCC
Q 040215 106 LKKILYGKFRDSI 118 (123)
Q Consensus 106 LK~~LYaKFG~~I 118 (123)
|-..||.+||+.|
T Consensus 2 l~rlly~rfgk~i 14 (37)
T PF08199_consen 2 LSRLLYSRFGKFI 14 (37)
T ss_pred hHHHHHHHHHHHH
Confidence 3457999999877
No 37
>COG4064 MtrG Tetrahydromethanopterin S-methyltransferase, subunit G [Coenzyme metabolism]
Probab=76.07 E-value=3.8 Score=27.92 Aligned_cols=32 Identities=9% Similarity=0.282 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCC
Q 040215 88 TLEKLEKEKETVLAQMNELKKILYGKFRDSIN 119 (123)
Q Consensus 88 ei~~le~~~~~i~~~m~eLK~~LYaKFG~~IN 119 (123)
+.+++.+++++|+.+..---..+|.+||..|-
T Consensus 16 dfne~~kRLdeieekvef~~~Ev~Qr~GkkiG 47 (75)
T COG4064 16 DFNEIHKRLDEIEEKVEFVNGEVYQRIGKKIG 47 (75)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhc
Confidence 34455555566666666666778889988763
No 38
>PF07195 FliD_C: Flagellar hook-associated protein 2 C-terminus; InterPro: IPR010809 The flagellar hook-associated protein 2 (HAP2 or FliD) forms the distal end of the flagella, and plays a role in mucin specific adhesion of the bacteria []. This alignment covers the C-terminal region of the flagellar hook-associated protein 2.; GO: 0007155 cell adhesion, 0009288 bacterial-type flagellum
Probab=75.67 E-value=6.8 Score=30.84 Aligned_cols=40 Identities=15% Similarity=0.204 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 040215 76 IRIEEMKEVNSKTLEKLEKEKETVLAQMNELKKILYGKFR 115 (123)
Q Consensus 76 e~LE~~~e~~~~ei~~le~~~~~i~~~m~eLK~~LYaKFG 115 (123)
-.+......++.++..++.+++.++.+|..+-..||++|+
T Consensus 189 G~i~~~~~~l~~~~~~~~~~i~~~~~rl~~~~~~l~~qf~ 228 (239)
T PF07195_consen 189 GSITSRIDSLNSQIKSLDKQIEDLEERLESKEERLRKQFS 228 (239)
T ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445667788999999999999999999999999999996
No 39
>TIGR00293 prefoldin, archaeal alpha subunit/eukaryotic subunit 5. This model finds a set of small proteins from the Archaea and from Aquifex aeolicus that may represent two orthologous groups. The proteins are predicted to be mostly coiled coil, and may hit large numbers of proteins that contain coiled coil regions.
Probab=74.23 E-value=14 Score=26.00 Aligned_cols=89 Identities=22% Similarity=0.205 Sum_probs=63.5
Q ss_pred hHHhhHHHHHHHHHHHHHhhhhhhhhhhhh-hcCCC-ccceeeecceeeecChhH-----------------------HH
Q 040215 21 KLNNRFHELEDEIKFAKETNDNLEDAGNEL-ILTDE-DIVRFQIGEVFAHVPREE-----------------------VE 75 (123)
Q Consensus 21 rLn~r~~~l~~~l~~~k~~le~L~Da~~El-L~ddd-~~i~ykiGe~Fv~~~~~~-----------------------a~ 75 (123)
.|.+++..+..++..+...+..|..+..++ -+-+- ..++-. ..+++.+|... ++
T Consensus 3 ql~~q~~ql~~~i~~l~~~i~~l~~~i~e~~~~~~~L~~l~~~-~~~~~lv~lg~~~~v~~~v~~~~~v~v~iG~g~~vE 81 (126)
T TIGR00293 3 QLAAELQILQQQVESLQAQIAALRALIAELETAIETLEDLKGA-EGKETLVPVGAGSFVKAKVKDTDKVLVSIGSGYYVE 81 (126)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc-CCCeEEEEcCCCeEEEEEeCCCCEEEEEcCCCEEEE
Confidence 366778888999999999999999999888 44330 012222 23444443321 22
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040215 76 IRIEEMKEVNSKTLEKLEKEKETVLAQMNELKKIL 110 (123)
Q Consensus 76 e~LE~~~e~~~~ei~~le~~~~~i~~~m~eLK~~L 110 (123)
.-++++++-++.+++.++..++.+...+..++.+.
T Consensus 82 ~~~~eA~~~l~~~~~~l~~~~~~l~~~l~~l~~~~ 116 (126)
T TIGR00293 82 KDAEEAIEFLKKRIEELEKAIEKLQEALAELASRA 116 (126)
T ss_pred ecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66888888999999999999999999998888653
No 40
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=74.07 E-value=15 Score=30.51 Aligned_cols=97 Identities=23% Similarity=0.323 Sum_probs=52.1
Q ss_pred HHHHhHH-HHhHHhhHHHHHHHHHHHHHhhhhhhhhhhhh-hcCCCccceeeecceeeecChhH-----HHHHHHHHHHH
Q 040215 12 DQQNINK-FSKLNNRFHELEDEIKFAKETNDNLEDAGNEL-ILTDEDIVRFQIGEVFAHVPREE-----VEIRIEEMKEV 84 (123)
Q Consensus 12 DQqkIN~-FsrLn~r~~~l~~~l~~~k~~le~L~Da~~El-L~ddd~~i~ykiGe~Fv~~~~~~-----a~e~LE~~~e~ 84 (123)
|...+.. =.+++.-+..+......++.++..|..+..|+ .+|-+..-.++ .-+..+..+= -...++.....
T Consensus 164 D~~~L~~~~~~l~~~~~~l~~~~~~L~~e~~~Lk~~~~e~~~~D~~eL~~lr--~eL~~~~~~i~~~k~~l~el~~el~~ 241 (325)
T PF08317_consen 164 DYAKLDKQLEQLDELLPKLRERKAELEEELENLKQLVEEIESCDQEELEALR--QELAEQKEEIEAKKKELAELQEELEE 241 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333 24556666777777777788888888888887 76654321111 1111111110 12244445555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040215 85 NSKTLEKLEKEKETVLAQMNELKKIL 110 (123)
Q Consensus 85 ~~~ei~~le~~~~~i~~~m~eLK~~L 110 (123)
+...++.+.++..++..+++++++.+
T Consensus 242 l~~~i~~~~~~k~~l~~eI~e~~~~~ 267 (325)
T PF08317_consen 242 LEEKIEELEEQKQELLAEIAEAEKIR 267 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55566666666666666666665443
No 41
>COG0216 PrfA Protein chain release factor A [Translation, ribosomal structure and biogenesis]
Probab=73.26 E-value=44 Score=29.01 Aligned_cols=43 Identities=23% Similarity=0.389 Sum_probs=34.2
Q ss_pred HHHHHhHHHHhHHhhHHHHHHHHHHHHHhhhhhhhhhhhhhcCC
Q 040215 11 EDQQNINKFSKLNNRFHELEDEIKFAKETNDNLEDAGNELILTD 54 (123)
Q Consensus 11 EDQqkIN~FsrLn~r~~~l~~~l~~~k~~le~L~Da~~ElL~dd 54 (123)
-|+.++.++|+=++++..+-......++-.+.|.+|- ++|.++
T Consensus 30 ~d~~~~~~lske~a~l~~iv~~~~~~~~~~~~l~~a~-~~l~~~ 72 (363)
T COG0216 30 SDPDEYRKLSKEYAELEPIVEKYREYKKAQEDLEDAK-EMLAEE 72 (363)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhcc
Confidence 4778888888888888888888888888888888876 555544
No 42
>PF02388 FemAB: FemAB family; InterPro: IPR003447 The femAB operon codes for two nearly identical approximately 50kDa proteins involved in the formation of the Staphylococcal pentaglycine interpeptide bridge in peptidoglycan []. These proteins are also considered as a factor influencing the level of methicillin resistance [].; GO: 0016755 transferase activity, transferring amino-acyl groups; PDB: 1XE4_A 1NE9_A 3GKR_A 1XIX_A 1P4N_A 1XF8_A 1LRZ_A.
Probab=70.69 E-value=18 Score=30.90 Aligned_cols=95 Identities=21% Similarity=0.318 Sum_probs=53.4
Q ss_pred HHhHHHHhHHhhHHHHHHHHHHHHHhhhhhhhhhhhhhcCCCccceeeecceeeecChhHHHHHHHHHHHHHHHHHHHHH
Q 040215 14 QNINKFSKLNNRFHELEDEIKFAKETNDNLEDAGNELILTDEDIVRFQIGEVFAHVPREEVEIRIEEMKEVNSKTLEKLE 93 (123)
Q Consensus 14 qkIN~FsrLn~r~~~l~~~l~~~k~~le~L~Da~~ElL~ddd~~i~ykiGe~Fv~~~~~~a~e~LE~~~e~~~~ei~~le 93 (123)
.-+..|.+|...-.+- .-+. -..++|...+-+-. .+. ..+ ++..++.++..+.|....+.+++++++|+
T Consensus 194 e~l~~F~~l~~~T~~R-~~f~--~r~~~Yf~~l~~~f--~d~--a~~----~~A~l~~~~~~~~l~~~~~~~~~~i~~l~ 262 (406)
T PF02388_consen 194 EELDDFYDLYKETAER-KGFS--IRSLEYFENLYDAF--GDK--AKF----FLAELNGKEYLESLQEKLEKLEKEIEKLE 262 (406)
T ss_dssp HHHHHHHHHHHHHHHH-TT-------HHHHHHHHHHC--CCC--EEE----EEEEECCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhh-CCCc--ccCHHHHHHHHHhc--CCC--eEE----EEEEEcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4477777776543221 1111 13456666655333 221 232 35678888888888888777777766666
Q ss_pred HH-----------------HHHHHHHHHHHHHHHHHhcCCCCCc
Q 040215 94 KE-----------------KETVLAQMNELKKILYGKFRDSINL 120 (123)
Q Consensus 94 ~~-----------------~~~i~~~m~eLK~~LYaKFG~~INL 120 (123)
.+ +.....++.+++ .|++..|+-|.|
T Consensus 263 ~~l~~~~k~~~k~~~~~~q~~~~~k~~~~~~-~~~~~~~~~~~l 305 (406)
T PF02388_consen 263 EKLEKNPKKKNKLKELEEQLASLEKRIEEAE-ELIAEYGDEIPL 305 (406)
T ss_dssp HHHHH-THHHHHHHHHHHHHHHHHHHHHHHH-HHHHHH-SEEEE
T ss_pred HHHHhCcchhhHHHHHHHHHHHHHHHHHHHH-HHHHhcCCcceE
Confidence 64 555555666665 456777776543
No 43
>KOG4196 consensus bZIP transcription factor MafK [Transcription]
Probab=70.43 E-value=22 Score=26.85 Aligned_cols=40 Identities=18% Similarity=0.205 Sum_probs=36.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 040215 75 EIRIEEMKEVNSKTLEKLEKEKETVLAQMNELKKILYGKF 114 (123)
Q Consensus 75 ~e~LE~~~e~~~~ei~~le~~~~~i~~~m~eLK~~LYaKF 114 (123)
...||+.+..+..+++.|..+.....-+...+|...|+=.
T Consensus 76 k~eLE~~k~~L~qqv~~L~~e~s~~~~E~da~k~k~e~l~ 115 (135)
T KOG4196|consen 76 KHELEKEKAELQQQVEKLKEENSRLRRELDAYKSKYEALQ 115 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4679999999999999999999999999999999888643
No 44
>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox []. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=69.09 E-value=23 Score=21.66 Aligned_cols=35 Identities=26% Similarity=0.314 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040215 78 IEEMKEVNSKTLEKLEKEKETVLAQMNELKKILYG 112 (123)
Q Consensus 78 LE~~~e~~~~ei~~le~~~~~i~~~m~eLK~~LYa 112 (123)
|-..-+.+.++.+.|..+...+..++..|+..|..
T Consensus 10 LK~~yd~Lk~~~~~L~~E~~~L~aev~~L~~kl~~ 44 (45)
T PF02183_consen 10 LKASYDSLKAEYDSLKKENEKLRAEVQELKEKLQM 44 (45)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 44445566666666666666667777777666644
No 45
>PRK06798 fliD flagellar capping protein; Validated
Probab=68.10 E-value=9.5 Score=33.22 Aligned_cols=37 Identities=14% Similarity=0.181 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 040215 79 EEMKEVNSKTLEKLEKEKETVLAQMNELKKILYGKFR 115 (123)
Q Consensus 79 E~~~e~~~~ei~~le~~~~~i~~~m~eLK~~LYaKFG 115 (123)
......++.++..++.+++.++.+|......||.+|.
T Consensus 378 ~~r~~~l~~~i~~l~~~~~~~e~rl~~~e~~l~~qf~ 414 (440)
T PRK06798 378 GERSKSIDNRVSKLDLKITDIDTQNKQKQDNIVDKYQ 414 (440)
T ss_pred ehhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455678888899999999999999999999999994
No 46
>smart00338 BRLZ basic region leucin zipper.
Probab=67.75 E-value=28 Score=21.94 Aligned_cols=36 Identities=28% Similarity=0.264 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040215 75 EIRIEEMKEVNSKTLEKLEKEKETVLAQMNELKKIL 110 (123)
Q Consensus 75 ~e~LE~~~e~~~~ei~~le~~~~~i~~~m~eLK~~L 110 (123)
...|+.....+..+...|..++..+..+...||..+
T Consensus 28 ~~~Le~~~~~L~~en~~L~~~~~~l~~e~~~lk~~~ 63 (65)
T smart00338 28 IEELERKVEQLEAENERLKKEIERLRRELEKLKSEL 63 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 445677777777777777777777777777777654
No 47
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=67.63 E-value=20 Score=25.35 Aligned_cols=44 Identities=25% Similarity=0.350 Sum_probs=24.3
Q ss_pred HHHhHHhhHHHHHHHHHHHHHhhhhhhhhhh-hh-hcCCCccceeee
Q 040215 18 KFSKLNNRFHELEDEIKFAKETNDNLEDAGN-EL-ILTDEDIVRFQI 62 (123)
Q Consensus 18 ~FsrLn~r~~~l~~~l~~~k~~le~L~Da~~-El-L~ddd~~i~yki 62 (123)
+.+++..+-..|..+++.++...++++..+- +| |+-+++ +.|.|
T Consensus 42 e~~~l~~~n~~L~~eI~~L~~~~dyiEe~AR~~Lg~vk~gE-ivy~~ 87 (105)
T PRK00888 42 TNAKLKARNDQLFAEIDDLKGGQEAIEERARNELGMVKPGE-TFYRI 87 (105)
T ss_pred HHHHHHHHHHHHHHHHHHhhCcHHHHHHHHHHHcCCCCCCC-EEEEe
Confidence 4455555556666666666655556665554 35 655544 44443
No 48
>PRK10884 SH3 domain-containing protein; Provisional
Probab=67.25 E-value=60 Score=25.64 Aligned_cols=78 Identities=15% Similarity=0.268 Sum_probs=45.7
Q ss_pred HHhhHHHHHHHHHHHHHhhhhhhhhhhhhhcCCCccceeeecceeeecChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040215 22 LNNRFHELEDEIKFAKETNDNLEDAGNELILTDEDIVRFQIGEVFAHVPREEVEIRIEEMKEVNSKTLEKLEKEKETVLA 101 (123)
Q Consensus 22 Ln~r~~~l~~~l~~~k~~le~L~Da~~ElL~ddd~~i~ykiGe~Fv~~~~~~a~e~LE~~~e~~~~ei~~le~~~~~i~~ 101 (123)
...|+..++.+++.++.++.+++.-.+..... ..=++.. .+.....|+.....+.+++..+..+.+.+..
T Consensus 91 ~~~rlp~le~el~~l~~~l~~~~~~~~~~~~~----l~~~~~~------~~~~~~~L~~~n~~L~~~l~~~~~~~~~l~~ 160 (206)
T PRK10884 91 LRTRVPDLENQVKTLTDKLNNIDNTWNQRTAE----MQQKVAQ------SDSVINGLKEENQKLKNQLIVAQKKVDAANL 160 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH----HHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566677777777776666665433222100 0001111 3333444777777888888888888888777
Q ss_pred HHHHHHHH
Q 040215 102 QMNELKKI 109 (123)
Q Consensus 102 ~m~eLK~~ 109 (123)
+...++..
T Consensus 161 ~~~~~~~~ 168 (206)
T PRK10884 161 QLDDKQRT 168 (206)
T ss_pred HHHHHHHH
Confidence 77777754
No 49
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=66.76 E-value=43 Score=32.82 Aligned_cols=88 Identities=22% Similarity=0.284 Sum_probs=64.6
Q ss_pred HhHHhhHHHHHHHHHHHHHhhhhhhhhhhhh--hcCC-CccceeeecceeeecChhHHHHHHHHHHHHHHHHHHHHHHHH
Q 040215 20 SKLNNRFHELEDEIKFAKETNDNLEDAGNEL--ILTD-EDIVRFQIGEVFAHVPREEVEIRIEEMKEVNSKTLEKLEKEK 96 (123)
Q Consensus 20 srLn~r~~~l~~~l~~~k~~le~L~Da~~El--L~dd-d~~i~ykiGe~Fv~~~~~~a~e~LE~~~e~~~~ei~~le~~~ 96 (123)
|++-.+..+|..+|..-+.+++.+-+|.++. ..+| -+.|- ...++. |+-|+..+.++.+++.+.+++
T Consensus 272 Skim~qqa~Lqrel~raR~e~keaqe~ke~~k~emad~ad~iE------maTldK----EmAEERaesLQ~eve~lkEr~ 341 (1243)
T KOG0971|consen 272 SKIMEQQADLQRELKRARKEAKEAQEAKERYKEEMADTADAIE------MATLDK----EMAEERAESLQQEVEALKERV 341 (1243)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHhhH----HHHHHHHHHHHHHHHHHHHHH
Confidence 6777888899999999999999999999887 3333 11221 123333 444555568899999999999
Q ss_pred HHHHHHHHHHHHHHHHhcCCC
Q 040215 97 ETVLAQMNELKKILYGKFRDS 117 (123)
Q Consensus 97 ~~i~~~m~eLK~~LYaKFG~~ 117 (123)
+++...+.=||...-.|=|+.
T Consensus 342 deletdlEILKaEmeekG~~~ 362 (1243)
T KOG0971|consen 342 DELETDLEILKAEMEEKGSDG 362 (1243)
T ss_pred HHHHHHHHHHHHHHHhcCCCC
Confidence 999999999998887774443
No 50
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=66.53 E-value=51 Score=31.92 Aligned_cols=97 Identities=16% Similarity=0.182 Sum_probs=62.0
Q ss_pred HhHHHHhHHhhHHHHHHHHHHHHHhhhhhhhhhhhh-hcCC-CccceeeecceeeecChhHHHHHHHHHHHHHHHHHHHH
Q 040215 15 NINKFSKLNNRFHELEDEIKFAKETNDNLEDAGNEL-ILTD-EDIVRFQIGEVFAHVPREEVEIRIEEMKEVNSKTLEKL 92 (123)
Q Consensus 15 kIN~FsrLn~r~~~l~~~l~~~k~~le~L~Da~~El-L~dd-d~~i~ykiGe~Fv~~~~~~a~e~LE~~~e~~~~ei~~l 92 (123)
+|-+-+.|-+|+.++.+.+-.+--+++.|.+-.--. -+.- +..-.-.+--+| ...+-+...|......+.++++.-
T Consensus 484 ~isei~qlqarikE~q~kl~~l~~Ekq~l~~qlkq~q~a~~~~~~~~s~L~aa~--~~ke~irq~ikdqldelskE~esk 561 (1118)
T KOG1029|consen 484 MISEIDQLQARIKELQEKLQKLAPEKQELNHQLKQKQSAHKETTQRKSELEAAR--RKKELIRQAIKDQLDELSKETESK 561 (1118)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhccCcchHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666666677777766666666666666644333 2211 110011111111 234556778888888888888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHh
Q 040215 93 EKEKETVLAQMNELKKILYGK 113 (123)
Q Consensus 93 e~~~~~i~~~m~eLK~~LYaK 113 (123)
-++++....+|++||..+|++
T Consensus 562 ~~eidi~n~qlkelk~~~~~q 582 (1118)
T KOG1029|consen 562 LNEIDIFNNQLKELKEDVNSQ 582 (1118)
T ss_pred HHhhhhHHHHHHHHHHHHHHH
Confidence 889999999999999998875
No 51
>COG1730 GIM5 Predicted prefoldin, molecular chaperone implicated in de novo protein folding [Posttranslational modification, protein turnover, chaperones]
Probab=66.37 E-value=54 Score=24.75 Aligned_cols=43 Identities=28% Similarity=0.308 Sum_probs=33.4
Q ss_pred eeeecChhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040215 65 VFAHVPREE-VEIRIEEMKEVNSKTLEKLEKEKETVLAQMNELK 107 (123)
Q Consensus 65 ~Fv~~~~~~-a~e~LE~~~e~~~~ei~~le~~~~~i~~~m~eLK 107 (123)
+-|++...- |....++..+-+++++++|+..+..+...+.+|=
T Consensus 78 viV~iGsg~~ae~~~~eAie~l~k~~~~l~~~~~~l~~~l~~l~ 121 (145)
T COG1730 78 VIVSIGSGYYAEKSADEAIEFLKKRIEELEKAIEKLQQALAELA 121 (145)
T ss_pred EEEEcCCceeeeecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444443 4677899999999999999999999888887764
No 52
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=64.70 E-value=51 Score=27.62 Aligned_cols=98 Identities=22% Similarity=0.210 Sum_probs=57.0
Q ss_pred HHHHHhHHH-HhHHhhHHHHHHHHHHHHHhhhhhhhhhhhh-hcCCCccceeeecceeeecChh-----HHHHHHHHHHH
Q 040215 11 EDQQNINKF-SKLNNRFHELEDEIKFAKETNDNLEDAGNEL-ILTDEDIVRFQIGEVFAHVPRE-----EVEIRIEEMKE 83 (123)
Q Consensus 11 EDQqkIN~F-srLn~r~~~l~~~l~~~k~~le~L~Da~~El-L~ddd~~i~ykiGe~Fv~~~~~-----~a~e~LE~~~e 83 (123)
.|...+++. ..+|.=+..+......++.++..|..+..|+ =+|-++.-.++ +-+.....+ .-.+.++....
T Consensus 158 ~D~~~L~~~~~~l~~~~~~l~~~~~~L~~e~~~L~~~~~e~~~~d~~eL~~lk--~~l~~~~~ei~~~~~~l~e~~~~l~ 235 (312)
T smart00787 158 EDYKLLMKELELLNSIKPKLRDRKDALEEELRQLKQLEDELEDCDPTELDRAK--EKLKKLLQEIMIKVKKLEELEEELQ 235 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhCCHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444443 4566667788888888889999999999888 76654432222 222222111 11233444445
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040215 84 VNSKTLEKLEKEKETVLAQMNELKKIL 110 (123)
Q Consensus 84 ~~~~ei~~le~~~~~i~~~m~eLK~~L 110 (123)
.+...|+....+..++..+++++.+.+
T Consensus 236 ~l~~~I~~~~~~k~e~~~~I~~ae~~~ 262 (312)
T smart00787 236 ELESKIEDLTNKKSELNTEIAEAEKKL 262 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556666666666666666666665543
No 53
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=64.68 E-value=68 Score=26.93 Aligned_cols=105 Identities=19% Similarity=0.226 Sum_probs=71.4
Q ss_pred HHHHHHhHHHHhHHhhHHHHHHHHHHHHHhhhhhhhhhhhh-hc--CC----Cc-cceeeecceeeecChhHHHHHHHHH
Q 040215 10 WEDQQNINKFSKLNNRFHELEDEIKFAKETNDNLEDAGNEL-IL--TD----ED-IVRFQIGEVFAHVPREEVEIRIEEM 81 (123)
Q Consensus 10 ~EDQqkIN~FsrLn~r~~~l~~~l~~~k~~le~L~Da~~El-L~--dd----d~-~i~ykiGe~Fv~~~~~~a~e~LE~~ 81 (123)
.+=..||..|-|+-.....|..++..++.++...+++..+= |+ .+ |. ..|--.|-+=..+-.-++-..|+..
T Consensus 133 re~~eK~~elEr~K~~~d~L~~e~~~Lre~L~~rdeli~khGlVlv~~~~ngd~~~~~~~~~~~~~~~vs~e~a~~L~~a 212 (302)
T PF09738_consen 133 REYREKIRELERQKRAHDSLREELDELREQLKQRDELIEKHGLVLVPDATNGDTSDEPNNVGHPKRALVSQEAAQLLESA 212 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCeeeCCCCCCCccccCccccCCCcccccchhhhhhhccc
Confidence 34456788899999999999999999999999988888775 33 21 10 0112112111112223334455555
Q ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 040215 82 -KEVNSKTLEKLEKEKETVLAQMNELKKILYGKF 114 (123)
Q Consensus 82 -~e~~~~ei~~le~~~~~i~~~m~eLK~~LYaKF 114 (123)
...|+-++.+|..+-+.+..++..||.+|+.++
T Consensus 213 G~g~LDvRLkKl~~eke~L~~qv~klk~qLee~~ 246 (302)
T PF09738_consen 213 GDGSLDVRLKKLADEKEELLEQVRKLKLQLEERQ 246 (302)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 667788899999999999999999999998754
No 54
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=62.31 E-value=24 Score=22.38 Aligned_cols=34 Identities=21% Similarity=0.287 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040215 73 EVEIRIEEMKEVNSKTLEKLEKEKETVLAQMNEL 106 (123)
Q Consensus 73 ~a~e~LE~~~e~~~~ei~~le~~~~~i~~~m~eL 106 (123)
.....+......++++++.+..+.+.++.+...|
T Consensus 17 ~~~~~~~~ei~~l~~~i~~l~~e~~~L~~ei~~l 50 (80)
T PF04977_consen 17 SRYYQLNQEIAELQKEIEELKKENEELKEEIERL 50 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3345677777788888888888888888888877
No 55
>PRK08032 fliD flagellar capping protein; Reviewed
Probab=62.21 E-value=18 Score=31.51 Aligned_cols=37 Identities=22% Similarity=0.248 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 040215 79 EEMKEVNSKTLEKLEKEKETVLAQMNELKKILYGKFR 115 (123)
Q Consensus 79 E~~~e~~~~ei~~le~~~~~i~~~m~eLK~~LYaKFG 115 (123)
......+...+..++.+++.++.+|..+...||.+|.
T Consensus 405 ~~~~~~l~~~i~~l~~~i~~~~~rl~~~e~rl~~qF~ 441 (462)
T PRK08032 405 KTATDGVNKTLKKLTKQYNAVSDSIDATIARYKAQFT 441 (462)
T ss_pred hhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3356678899999999999999999999999999994
No 56
>PRK11637 AmiB activator; Provisional
Probab=61.96 E-value=64 Score=27.48 Aligned_cols=38 Identities=8% Similarity=0.101 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040215 75 EIRIEEMKEVNSKTLEKLEKEKETVLAQMNELKKILYG 112 (123)
Q Consensus 75 ~e~LE~~~e~~~~ei~~le~~~~~i~~~m~eLK~~LYa 112 (123)
...++.....++.+|..++.++...+..+..+...+|.
T Consensus 98 i~~~~~ei~~l~~eI~~~q~~l~~~~~~l~~rlra~Y~ 135 (428)
T PRK11637 98 LNQLNKQIDELNASIAKLEQQQAAQERLLAAQLDAAFR 135 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555666666666666666667777777777775
No 57
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=61.96 E-value=37 Score=21.33 Aligned_cols=34 Identities=29% Similarity=0.274 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040215 76 IRIEEMKEVNSKTLEKLEKEKETVLAQMNELKKI 109 (123)
Q Consensus 76 e~LE~~~e~~~~ei~~le~~~~~i~~~m~eLK~~ 109 (123)
+.|+.....+..+...|..++..+..+...|+..
T Consensus 29 ~~Le~~~~~L~~en~~L~~~~~~L~~~~~~L~~e 62 (64)
T PF00170_consen 29 EELEEKVEELESENEELKKELEQLKKEIQSLKSE 62 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3445555555555555555555555555555543
No 58
>PRK07737 fliD flagellar capping protein; Validated
Probab=61.53 E-value=15 Score=32.45 Aligned_cols=33 Identities=18% Similarity=0.363 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 040215 83 EVNSKTLEKLEKEKETVLAQMNELKKILYGKFR 115 (123)
Q Consensus 83 e~~~~ei~~le~~~~~i~~~m~eLK~~LYaKFG 115 (123)
..+..++..+..+++.++.+|..+...||++|.
T Consensus 444 ~~l~~~i~~l~~~i~~~~~rl~~~e~ry~~qf~ 476 (501)
T PRK07737 444 FAIGKDLNQIETQIDRFQDRLKQIEDRYYKKFS 476 (501)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467888999999999999999999999999994
No 59
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=61.14 E-value=83 Score=25.66 Aligned_cols=81 Identities=16% Similarity=0.210 Sum_probs=41.2
Q ss_pred HHHHhHHhhHHHHHHHHHHHHHhhhhhhhhhhhh--hcCCCccceeeecceeeecChhHHHHHHHHHHHHHHHHHHHHHH
Q 040215 17 NKFSKLNNRFHELEDEIKFAKETNDNLEDAGNEL--ILTDEDIVRFQIGEVFAHVPREEVEIRIEEMKEVNSKTLEKLEK 94 (123)
Q Consensus 17 N~FsrLn~r~~~l~~~l~~~k~~le~L~Da~~El--L~ddd~~i~ykiGe~Fv~~~~~~a~e~LE~~~e~~~~ei~~le~ 94 (123)
+.|+.|+..+..++..+..+..++..|.+.-.++ ...+. .-.....+..+......++.++..+..
T Consensus 89 ~e~~aL~~E~~~ak~r~~~le~el~~l~~~~~~l~~~i~~l------------~~~~~~~e~~~~e~~~~~e~e~~~i~e 156 (239)
T COG1579 89 RELRALNIEIQIAKERINSLEDELAELMEEIEKLEKEIEDL------------KERLERLEKNLAEAEARLEEEVAEIRE 156 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666666666666666665555555544443 11110 001223344455555555555666666
Q ss_pred HHHHHHHHHHHHHHH
Q 040215 95 EKETVLAQMNELKKI 109 (123)
Q Consensus 95 ~~~~i~~~m~eLK~~ 109 (123)
+...+.++-.+|+..
T Consensus 157 ~~~~~~~~~~~L~~~ 171 (239)
T COG1579 157 EGQELSSKREELKEK 171 (239)
T ss_pred HHHHHHHHHHHHHHh
Confidence 555555565566543
No 60
>KOG2196 consensus Nuclear porin [Nuclear structure]
Probab=60.09 E-value=61 Score=26.86 Aligned_cols=97 Identities=20% Similarity=0.235 Sum_probs=71.3
Q ss_pred ccHHHHHHhH---HHHhHHhhHHHHHHHHHHHHHhhhhhhhhhhhh--hcCC-CccceeeecceeeecChhHHHHHHHHH
Q 040215 8 VTWEDQQNIN---KFSKLNNRFHELEDEIKFAKETNDNLEDAGNEL--ILTD-EDIVRFQIGEVFAHVPREEVEIRIEEM 81 (123)
Q Consensus 8 Vt~EDQqkIN---~FsrLn~r~~~l~~~l~~~k~~le~L~Da~~El--L~dd-d~~i~ykiGe~Fv~~~~~~a~e~LE~~ 81 (123)
|+.=|+-.|- +-+.||.....++..-+.+-.+++++..-..|| +++. +......-|..+. -..+.=.++.-.+
T Consensus 101 vNaWDr~LI~ngekI~~Ly~e~~~vk~~qkrLdq~L~~I~sqQ~ELE~~L~~lE~k~~~~~g~~~~-~~~D~eR~qty~~ 179 (254)
T KOG2196|consen 101 VNAWDRTLIENGEKISGLYNEVVKVKLDQKRLDQELEFILSQQQELEDLLDPLETKLELQSGHTYL-SRADVEREQTYKM 179 (254)
T ss_pred HhHHHHHHHhCcHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhh-hhhhHHHHHHHHH
Confidence 3344444442 457899999999999999999999999999999 7776 4456666777662 2233334555667
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 040215 82 KEVNSKTLEKLEKEKETVLAQMNE 105 (123)
Q Consensus 82 ~e~~~~ei~~le~~~~~i~~~m~e 105 (123)
.+.+++.+..+...++.|-..|+.
T Consensus 180 a~nidsqLk~l~~dL~~ii~~lN~ 203 (254)
T KOG2196|consen 180 AENIDSQLKRLSEDLKQIIKSLNT 203 (254)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHh
Confidence 788889999999988888888764
No 61
>PRK05771 V-type ATP synthase subunit I; Validated
Probab=59.62 E-value=92 Score=28.08 Aligned_cols=42 Identities=26% Similarity=0.309 Sum_probs=28.7
Q ss_pred cChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040215 69 VPREEVEIRIEEMKEVNSKTLEKLEKEKETVLAQMNELKKIL 110 (123)
Q Consensus 69 ~~~~~a~e~LE~~~e~~~~ei~~le~~~~~i~~~m~eLK~~L 110 (123)
.+.+++....+....++.+++.++.+++.+++++.++|+..+
T Consensus 82 ~~~~e~~~~~~~~~~~~~~~i~~l~~~~~~L~~~~~~l~~~~ 123 (646)
T PRK05771 82 KSLEELIKDVEEELEKIEKEIKELEEEISELENEIKELEQEI 123 (646)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555556666667777777777777777777777777654
No 62
>PRK06664 fliD flagellar hook-associated protein FliD; Validated
Probab=59.30 E-value=18 Score=33.36 Aligned_cols=37 Identities=14% Similarity=0.127 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 040215 79 EEMKEVNSKTLEKLEKEKETVLAQMNELKKILYGKFR 115 (123)
Q Consensus 79 E~~~e~~~~ei~~le~~~~~i~~~m~eLK~~LYaKFG 115 (123)
......++..+..+..+++.++.+|..+...||++|.
T Consensus 599 ~~r~~~l~~~i~~l~~~i~~~e~rl~~~e~rl~~QFt 635 (661)
T PRK06664 599 YNKVKGLDERIADNNKKIEEYEKKLESKERKLKGKYL 635 (661)
T ss_pred ehHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4466789999999999999999999999999999995
No 63
>PRK01156 chromosome segregation protein; Provisional
Probab=58.53 E-value=1.6e+02 Score=27.41 Aligned_cols=83 Identities=18% Similarity=0.209 Sum_probs=44.3
Q ss_pred HHhHHhhHHHHHHHHHHHHHhhhhhhhhhhhhhcCCCccceeeecceeeecChhHHHHHHH---HHHHHHHHHHHHHHHH
Q 040215 19 FSKLNNRFHELEDEIKFAKETNDNLEDAGNELILTDEDIVRFQIGEVFAHVPREEVEIRIE---EMKEVNSKTLEKLEKE 95 (123)
Q Consensus 19 FsrLn~r~~~l~~~l~~~k~~le~L~Da~~ElL~ddd~~i~ykiGe~Fv~~~~~~a~e~LE---~~~e~~~~ei~~le~~ 95 (123)
+..|+.+...++.++..++..+..|..+..+|= -+++ +|-|==.++.+-..+.+. .....+..++..|..+
T Consensus 418 ~~~l~~~i~~l~~~i~~l~~~~~el~~~~~~l~---~~~~---Cp~c~~~~~~e~~~e~i~~~~~~i~~l~~~i~~l~~~ 491 (895)
T PRK01156 418 LQDISSKVSSLNQRIRALRENLDELSRNMEMLN---GQSV---CPVCGTTLGEEKSNHIINHYNEKKSRLEEKIREIEIE 491 (895)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc---cCCC---CCCCCCcCChhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555556666555665554431 1122 233333444555444444 5555667777777777
Q ss_pred HHHHHHHHHHHH
Q 040215 96 KETVLAQMNELK 107 (123)
Q Consensus 96 ~~~i~~~m~eLK 107 (123)
+..+..+...|+
T Consensus 492 ~~~l~~~~~~~~ 503 (895)
T PRK01156 492 VKDIDEKIVDLK 503 (895)
T ss_pred HHHHHHHHHHHH
Confidence 766666655543
No 64
>PF03961 DUF342: Protein of unknown function (DUF342); InterPro: IPR005646 This family of bacterial proteins has no known function. The proteins are in the region of 500-600 amino acid residues in length.
Probab=57.55 E-value=1.2e+02 Score=26.06 Aligned_cols=79 Identities=18% Similarity=0.254 Sum_probs=39.5
Q ss_pred HHHhHHHHhHHhhHHHHHHHHHHHHHhhhhhhhhhhhhhcCCCccceeeecceeeecChhHHHHHHHHHHHHHHHHHHHH
Q 040215 13 QQNINKFSKLNNRFHELEDEIKFAKETNDNLEDAGNELILTDEDIVRFQIGEVFAHVPREEVEIRIEEMKEVNSKTLEKL 92 (123)
Q Consensus 13 QqkIN~FsrLn~r~~~l~~~l~~~k~~le~L~Da~~ElL~ddd~~i~ykiGe~Fv~~~~~~a~e~LE~~~e~~~~ei~~l 92 (123)
.....++.+|..++..+..++..++..+..+..+...--. ..........+......+.+++.++
T Consensus 330 ~~l~~~~~~l~~~~~~~~~~l~~l~~~l~~l~~~~~~~~~---------------~~~~~~~~~~l~~~~~~l~~~~~~l 394 (451)
T PF03961_consen 330 PELKEKLEELEEELEELKEELEKLKKNLKKLKKLKKQGKL---------------PPEKKEQLKKLKEKKKELKEELKEL 394 (451)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccC---------------CHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555566666666666666666666665555544321110 1122333444444455555555555
Q ss_pred HHHHHHHHHHHHHH
Q 040215 93 EKEKETVLAQMNEL 106 (123)
Q Consensus 93 e~~~~~i~~~m~eL 106 (123)
..++..++..+...
T Consensus 395 ~~~~~~l~~~l~~~ 408 (451)
T PF03961_consen 395 KEELKELKEELERS 408 (451)
T ss_pred HHHHHHHHHHHHhh
Confidence 55555554444443
No 65
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=56.97 E-value=1.6e+02 Score=28.89 Aligned_cols=61 Identities=13% Similarity=0.152 Sum_probs=42.9
Q ss_pred ceeeecceeeecChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC
Q 040215 58 VRFQIGEVFAHVPREEVEIRIEEMKEVNSKTLEKLEKEKETVLAQMNELKKILYGKFRDSI 118 (123)
Q Consensus 58 i~ykiGe~Fv~~~~~~a~e~LE~~~e~~~~ei~~le~~~~~i~~~m~eLK~~LYaKFG~~I 118 (123)
.+..++++++..+...+...+......++.-+..+....+.+...+..++..|=+.+|+.+
T Consensus 877 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~f~~~l~~~~~~~~ 937 (1201)
T PF12128_consen 877 LLEKLAELSEPPNAEDAEGSVDERLRDLEDLLQRRKRLREELKKAVERFKGVLTKHSGSEL 937 (1201)
T ss_pred HHhhhhhcCCCCCchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccch
Confidence 4455577777777777775566666666666777777777888888888888866666543
No 66
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=56.95 E-value=1e+02 Score=27.79 Aligned_cols=36 Identities=19% Similarity=0.177 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040215 75 EIRIEEMKEVNSKTLEKLEKEKETVLAQMNELKKIL 110 (123)
Q Consensus 75 ~e~LE~~~e~~~~ei~~le~~~~~i~~~m~eLK~~L 110 (123)
.+.++....++..++..+..+++.+..++..++..+
T Consensus 430 l~~l~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 465 (650)
T TIGR03185 430 LGEAQNELFRSEAEIEELLRQLETLKEAIEALRKTL 465 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444555555555555555555554433
No 67
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=56.70 E-value=30 Score=24.70 Aligned_cols=28 Identities=21% Similarity=0.270 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040215 78 IEEMKEVNSKTLEKLEKEKETVLAQMNE 105 (123)
Q Consensus 78 LE~~~e~~~~ei~~le~~~~~i~~~m~e 105 (123)
++.....+-+++..|...+.++-.+=..
T Consensus 13 le~~l~~l~~~~~~LK~~~~~l~EEN~~ 40 (107)
T PF06156_consen 13 LEQQLGQLLEELEELKKQLQELLEENAR 40 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344444444444444444433333
No 68
>PF14389 Lzipper-MIP1: Leucine-zipper of ternary complex factor MIP1
Probab=56.54 E-value=62 Score=22.14 Aligned_cols=81 Identities=15% Similarity=0.117 Sum_probs=48.1
Q ss_pred hHHhhHHHHHHHHHHHHHhhhhhhhhhhhh-hcCCCccceeeecceeeecChhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040215 21 KLNNRFHELEDEIKFAKETNDNLEDAGNEL-ILTDEDIVRFQIGEVFAHVPREEVEIRIEEMKEVNSKTLEKLEKEKETV 99 (123)
Q Consensus 21 rLn~r~~~l~~~l~~~k~~le~L~Da~~El-L~ddd~~i~ykiGe~Fv~~~~~~a~e~LE~~~e~~~~ei~~le~~~~~i 99 (123)
..+.+...|+.++..+++.++.=.+.-.-| -+-.-.+.++.-..+| +.....++-.+|.-++.++-.+
T Consensus 5 ~~~~~r~~LeqeV~~Lq~~L~~E~~~r~aLe~al~~~~~~~~~~~~~-----------lp~~~keLL~EIA~lE~eV~~L 73 (88)
T PF14389_consen 5 ALHERRSALEQEVAELQKQLQEEQDLRRALEKALGRSSGSLPSSPSS-----------LPKKAKELLEEIALLEAEVAKL 73 (88)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcccCCcccc-----------CChHHHHHHHHHHHHHHHHHHH
Confidence 456778889999999999988644333222 1111111221112222 2233334455788888888888
Q ss_pred HHHHHHHHHHHHH
Q 040215 100 LAQMNELKKILYG 112 (123)
Q Consensus 100 ~~~m~eLK~~LYa 112 (123)
+..+..|+..||.
T Consensus 74 E~~v~~L~~~l~~ 86 (88)
T PF14389_consen 74 EQKVLSLYRQLFQ 86 (88)
T ss_pred HHHHHHHHHHHHh
Confidence 8888888887763
No 69
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=56.53 E-value=1.1e+02 Score=28.94 Aligned_cols=91 Identities=19% Similarity=0.332 Sum_probs=52.5
Q ss_pred HHHHhHHhhHHHHHHHHHHHHHhhhhhhh---hhhhh--hcCCCccceeeecceeeecChhHHH---HHHHHHHHHHHHH
Q 040215 17 NKFSKLNNRFHELEDEIKFAKETNDNLED---AGNEL--ILTDEDIVRFQIGEVFAHVPREEVE---IRIEEMKEVNSKT 88 (123)
Q Consensus 17 N~FsrLn~r~~~l~~~l~~~k~~le~L~D---a~~El--L~ddd~~i~ykiGe~Fv~~~~~~a~---e~LE~~~e~~~~e 88 (123)
.+++++...+.....+......+++.|.+ +..|+ |...-+..+|-.|.... .+.+. .+|-+..+.+..+
T Consensus 53 a~l~~~k~qlr~~q~e~q~~~~ei~~LqeELr~q~e~~rL~~~~e~~~~e~e~l~~---ld~~~~q~~rl~~E~er~~~E 129 (775)
T PF10174_consen 53 AELSRLKEQLRVTQEENQKAQEEIQALQEELRAQRELNRLQQELEKAQYEFESLQE---LDKAQEQFERLQAERERLQRE 129 (775)
T ss_pred HHHHhHHHHHHHHHhhHHHHHHHHHHHHHHHHHhhHHHHHHHHhhhcccccchhhh---hhhHHHHHHHHHHHHHHHHHH
Confidence 34677777776666666655555554433 55555 54443346666665443 44443 3333456666666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 040215 89 LEKLEKEKETVLAQMNELKKIL 110 (123)
Q Consensus 89 i~~le~~~~~i~~~m~eLK~~L 110 (123)
+..+.+.++..+.++..+|..|
T Consensus 130 l~~lr~~lE~~q~~~e~~q~~l 151 (775)
T PF10174_consen 130 LERLRKTLEELQLRIETQQQTL 151 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 7777777777766666666544
No 70
>PRK03918 chromosome segregation protein; Provisional
Probab=56.35 E-value=1.6e+02 Score=26.94 Aligned_cols=23 Identities=22% Similarity=0.385 Sum_probs=9.4
Q ss_pred HHHHhHHhhHHHHHHHHHHHHHh
Q 040215 17 NKFSKLNNRFHELEDEIKFAKET 39 (123)
Q Consensus 17 N~FsrLn~r~~~l~~~l~~~k~~ 39 (123)
+++-++..++..+..++..+++.
T Consensus 612 ~~l~~~~~~l~~~~~~l~~~~~~ 634 (880)
T PRK03918 612 KELEREEKELKKLEEELDKAFEE 634 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333344444444444444433
No 71
>PF15518 L_protein_N: L protein N-terminus; PDB: 2XI5_D 2XI7_D.
Probab=55.56 E-value=7.5 Score=30.63 Aligned_cols=52 Identities=29% Similarity=0.379 Sum_probs=32.1
Q ss_pred eeecChhHHHHHHHHHHHHHHHHHHHHHHHH------------------------------HHHHHHHHHHHHHHHHhcC
Q 040215 66 FAHVPREEVEIRIEEMKEVNSKTLEKLEKEK------------------------------ETVLAQMNELKKILYGKFR 115 (123)
Q Consensus 66 Fv~~~~~~a~e~LE~~~e~~~~ei~~le~~~------------------------------~~i~~~m~eLK~~LYaKFG 115 (123)
=|+++.+..+.-.++..+-...-...+.=.. .--=+.-=+||+.||.||+
T Consensus 94 KVSV~~eSs~iT~eKY~~~~~~i~~~lgi~~EivIIR~nPv~~~l~i~s~~F~~~~p~i~l~ldF~~Ff~Lk~~L~~KF~ 173 (183)
T PF15518_consen 94 KVSVDNESSEITYEKYNEIFGDIFSQLGIDYEIVIIRANPVSNQLHISSENFKQLFPNIPLNLDFTWFFELKTMLYDKFA 173 (183)
T ss_dssp EE-SSSHHHHHHHHHHHHHHHHHHHHHT--EEEEEEEE-TTT--EEE--HHHHHHSSS-------HHHHHHHHHHHHHHT
T ss_pred EEeccCcccHHHHHHHHHHHHHHHhhcCCCeEEEEEEecCccceEEEchHHHHHHCCCceEeechHHHHHHHHHHHHHhc
Confidence 3678888888888877766655555442110 0011345689999999999
Q ss_pred CC
Q 040215 116 DS 117 (123)
Q Consensus 116 ~~ 117 (123)
+.
T Consensus 174 Dd 175 (183)
T PF15518_consen 174 DD 175 (183)
T ss_dssp T-
T ss_pred Ch
Confidence 74
No 72
>PF04201 TPD52: Tumour protein D52 family; InterPro: IPR007327 The hD52 gene was originally identified through its elevated expression level in human breast carcinoma. Cloning of D52 homologues from other species has indicated that D52 may play roles in calcium-mediated signal transduction and cell proliferation. Two human homologues of hD52, hD53 and hD54, have also been identified, demonstrating the existence of a novel gene/protein family []. These proteins have an N-terminal coiled-coil that allows members to form homo- and heterodimers with each other [].
Probab=55.46 E-value=48 Score=25.70 Aligned_cols=35 Identities=14% Similarity=0.115 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040215 76 IRIEEMKEVNSKTLEKLEKEKETVLAQMNELKKIL 110 (123)
Q Consensus 76 e~LE~~~e~~~~ei~~le~~~~~i~~~m~eLK~~L 110 (123)
+.|-....+++.+|..|..-+...+..+.+||..|
T Consensus 32 eeLr~EL~KvEeEI~TLrqvL~aKer~~~eLKrkL 66 (162)
T PF04201_consen 32 EELRSELAKVEEEIQTLRQVLAAKERHCAELKRKL 66 (162)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 44555566666777777666767777788888877
No 73
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=55.43 E-value=1.1e+02 Score=24.88 Aligned_cols=31 Identities=23% Similarity=0.288 Sum_probs=20.3
Q ss_pred HHhHHHHhHHhhHHHHHHHHHHHHHhhhhhh
Q 040215 14 QNINKFSKLNNRFHELEDEIKFAKETNDNLE 44 (123)
Q Consensus 14 qkIN~FsrLn~r~~~l~~~l~~~k~~le~L~ 44 (123)
+.=+.++++|.++..++.+++.++++.-.++
T Consensus 35 k~~~e~e~~~~~~~~~~~e~e~le~qv~~~e 65 (239)
T COG1579 35 KAKAELEALNKALEALEIELEDLENQVSQLE 65 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4446677777777777777777666655443
No 74
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=54.68 E-value=67 Score=24.85 Aligned_cols=57 Identities=25% Similarity=0.332 Sum_probs=34.8
Q ss_pred hcCCCccceeeecce--eeecChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040215 51 ILTDEDIVRFQIGEV--FAHVPREEVEIRIEEMKEVNSKTLEKLEKEKETVLAQMNELKK 108 (123)
Q Consensus 51 L~ddd~~i~ykiGe~--Fv~~~~~~a~e~LE~~~e~~~~ei~~le~~~~~i~~~m~eLK~ 108 (123)
|+||+-.-.=|||.+ |-.+| .++...+....+.++++++.+..++.+++.++..+|.
T Consensus 39 LvDDglV~~EKiGssn~YWsFp-s~~~~~~~~~~~~l~~~~~~~~~~i~~l~~~i~~~~~ 97 (188)
T PF03962_consen 39 LVDDGLVHVEKIGSSNYYWSFP-SQAKQKRQNKLEKLQKEIEELEKKIEELEEKIEEAKK 97 (188)
T ss_pred HhccccchhhhccCeeEEEecC-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 445432234478875 33444 3455566667777777777777777777777666653
No 75
>PF08946 Osmo_CC: Osmosensory transporter coiled coil; InterPro: IPR015041 The osmosensory transporter coiled coil is a C-terminal domain found in various bacterial osmoprotective transporters, such as ProP, Proline/betaine transporter, Proline permease 2 and the citrate proton symporters. It adopts an antiparallel coiled-coil structure, and is essential for osmosensory and osmoprotectant transporter function []. ; PDB: 1R48_B.
Probab=54.66 E-value=26 Score=21.88 Aligned_cols=31 Identities=13% Similarity=0.219 Sum_probs=10.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040215 72 EEVEIRIEEMKEVNSKTLEKLEKEKETVLAQ 102 (123)
Q Consensus 72 ~~a~e~LE~~~e~~~~ei~~le~~~~~i~~~ 102 (123)
.+|.+.|...-..++..|+.+..++.+++.+
T Consensus 4 ~EAkelLqe~~d~IEqkiedid~qIaeLe~K 34 (46)
T PF08946_consen 4 AEAKELLQEHYDNIEQKIEDIDEQIAELEAK 34 (46)
T ss_dssp -----------THHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhHHHhHHHHHHHHHHHHHH
Confidence 3455555555555555555555555444443
No 76
>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules. The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].
Probab=53.86 E-value=65 Score=25.62 Aligned_cols=95 Identities=19% Similarity=0.228 Sum_probs=54.3
Q ss_pred HHHHhHHhhHHHHHHHHHHHHHhhhhhhhhhhhhhc--CCCccceeeecceeeecChhHHHHHHHHHHHHHHHHHHHHHH
Q 040215 17 NKFSKLNNRFHELEDEIKFAKETNDNLEDAGNELIL--TDEDIVRFQIGEVFAHVPREEVEIRIEEMKEVNSKTLEKLEK 94 (123)
Q Consensus 17 N~FsrLn~r~~~l~~~l~~~k~~le~L~Da~~ElL~--ddd~~i~ykiGe~Fv~~~~~~a~e~LE~~~e~~~~ei~~le~ 94 (123)
..||-||.|+..++.-+...++-=+.|-....+.+. .-. .-.|.-=-+-..-..+.|.+.++.......+++..|..
T Consensus 90 ~sfsdl~~ryek~K~vi~~~k~NEE~Lkk~~~ey~~~l~~~-eqry~aLK~hAeekL~~ANeei~~v~~~~~~e~~aLqa 168 (207)
T PF05010_consen 90 KSFSDLHKRYEKQKEVIEGYKKNEETLKKCIEEYEERLKKE-EQRYQALKAHAEEKLEKANEEIAQVRSKHQAELLALQA 168 (207)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 479999999999999998888775555555544411 110 01221111111123345555555556666666666666
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 040215 95 EKETVLAQMNELKKILYG 112 (123)
Q Consensus 95 ~~~~i~~~m~eLK~~LYa 112 (123)
.+..-+-++..|...|=.
T Consensus 169 ~lkk~e~~~~SLe~~LeQ 186 (207)
T PF05010_consen 169 SLKKEEMKVQSLEESLEQ 186 (207)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 666666666666655533
No 77
>PF11285 DUF3086: Protein of unknown function (DUF3086); InterPro: IPR021437 This family of proteins with unknown function appears to be restricted to Cyanobacteria.
Probab=53.45 E-value=38 Score=28.38 Aligned_cols=33 Identities=24% Similarity=0.387 Sum_probs=30.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040215 72 EEVEIRIEEMKEVNSKTLEKLEKEKETVLAQMN 104 (123)
Q Consensus 72 ~~a~e~LE~~~e~~~~ei~~le~~~~~i~~~m~ 104 (123)
..+...|+..+..++.+|++|+.+.+.|+.+|.
T Consensus 3 ~~~L~eL~qrk~~Lq~eIe~LerR~~ri~~Emr 35 (283)
T PF11285_consen 3 QEALKELEQRKQALQIEIEQLERRRERIEKEMR 35 (283)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467788999999999999999999999999986
No 78
>PF05524 PEP-utilisers_N: PEP-utilising enzyme, N-terminal; InterPro: IPR008731 This sequence identifies proteins which are a component of the phosphoenolpyruvate:sugar phosphotransferase system (PTS), a major carbohydrate active transport system. The PTS system is found throughout the bacterial kingdom, and is responsible for the coupled phosphorylation and translocation of numerous sugars across the cytoplasmic membrane []. This entry represents the N-terminal domain of enzyme I (EIN) which transfers the phosphoryl group from phosphoenolpyruvate (PEP) to the phosphoryl carrier protein (HPr) which in turn phosphorylates a group of membrane-associated proteins, known as enzyme II. The N-terminal domain of EI (EIN) extends from residues 1 to 259 and can be phosphorylated in a fully reversible manner by phosphorylated HPr. EIN, however, cannot be autophosphorylated by PEP [, ].; GO: 0005351 sugar:hydrogen symporter activity, 0008965 phosphoenolpyruvate-protein phosphotransferase activity, 0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system, 0005737 cytoplasm; PDB: 2WQD_A 2XDF_B 2HWG_A 3EZB_A 2L5H_A 3EZA_A 1EZB_A 2EZA_A 1EZA_A 1EZC_A ....
Probab=52.73 E-value=22 Score=24.84 Aligned_cols=56 Identities=20% Similarity=0.250 Sum_probs=34.3
Q ss_pred eeecceeeecChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Q 040215 60 FQIGEVFAHVPREEVEIRIEEMKEVNSKTLEKLEKEKETVLAQMNELKKILYGKFRDS 117 (123)
Q Consensus 60 ykiGe~Fv~~~~~~a~e~LE~~~e~~~~ei~~le~~~~~i~~~m~eLK~~LYaKFG~~ 117 (123)
.-+|-+|+..+....-.. ......+.++..+..-+.....++..|+..+=++.|..
T Consensus 10 ia~G~~~~~~~~~~~~~~--~~~~~~~~E~~rl~~Al~~~~~eL~~l~~~~~~~~~~~ 65 (123)
T PF05524_consen 10 IAIGPAFVLRPPEPEIPE--RHIDDIEAEIERLEQALEKAREELEQLAERAESKLGEE 65 (123)
T ss_dssp EEEEEEEE---------T--TB-SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHSS
T ss_pred EEEEEEEEEecccCcccc--cccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 458888888866622111 11157778888888888888888888888877777654
No 79
>PF05565 Sipho_Gp157: Siphovirus Gp157; InterPro: IPR008840 This family contains both viral and bacterial proteins which are related to the Gp157 protein of the Streptococcus thermophilus SFi bacteriophage. It is thought that bacteria possessing the gene coding for this protein have an increased resistance to the bacteriophage [].
Probab=52.50 E-value=66 Score=24.12 Aligned_cols=40 Identities=20% Similarity=0.323 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 040215 74 VEIRIEEMKEVNSKTLEKLEKEKETVLAQMNELKKILYGK 113 (123)
Q Consensus 74 a~e~LE~~~e~~~~ei~~le~~~~~i~~~m~eLK~~LYaK 113 (123)
+-..+++..+.+++++..|.......+.+...||..|..=
T Consensus 48 ~Ik~~ea~~e~~k~E~krL~~rkk~~e~~~~~Lk~yL~~~ 87 (162)
T PF05565_consen 48 VIKNLEADIEAIKAEIKRLQERKKSIENRIDRLKEYLLDA 87 (162)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3567888899999999999999999999999999999763
No 80
>KOG4657 consensus Uncharacterized conserved protein [Function unknown]
Probab=51.41 E-value=1.4e+02 Score=24.66 Aligned_cols=42 Identities=19% Similarity=0.265 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 040215 74 VEIRIEEMKEVNSKTLEKLEKEKETVLAQMNELKKILYGKFR 115 (123)
Q Consensus 74 a~e~LE~~~e~~~~ei~~le~~~~~i~~~m~eLK~~LYaKFG 115 (123)
-+-.+++.....+++++.+...+...+.+|..+|..+-.|-|
T Consensus 87 ~q~~ieqeik~~q~elEvl~~n~Q~lkeE~dd~keiIs~kr~ 128 (246)
T KOG4657|consen 87 RQMGIEQEIKATQSELEVLRRNLQLLKEEKDDSKEIISQKRQ 128 (246)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 356678888888889999999999999999998888877655
No 81
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=51.30 E-value=93 Score=22.66 Aligned_cols=35 Identities=23% Similarity=0.400 Sum_probs=27.3
Q ss_pred hHHHHhHHhhHHHHHHHHHHHHHhhhhhh----hhhhhh
Q 040215 16 INKFSKLNNRFHELEDEIKFAKETNDNLE----DAGNEL 50 (123)
Q Consensus 16 IN~FsrLn~r~~~l~~~l~~~k~~le~L~----Da~~El 50 (123)
+--+.+|.+.+..++.++..++.++..|. .|..||
T Consensus 15 ~~~ve~L~s~lr~~E~E~~~l~~el~~l~~~r~~l~~Ei 53 (120)
T PF12325_consen 15 VQLVERLQSQLRRLEGELASLQEELARLEAERDELREEI 53 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567888888888899999988888884 467777
No 82
>cd04769 HTH_MerR2 Helix-Turn-Helix DNA binding domain of MerR2-like transcription regulators. Helix-turn-helix (HTH) transcription regulator MerR2 and related proteins. MerR2 in Bacillus cereus RC607 regulates resistance to organomercurials. The MerR family transcription regulators have been shown to mediate responses to stress including exposure to heavy metals, drugs, or oxygen radicals in eubacterial and some archaeal species. They regulate transcription by reconfiguring the spacer between the -35 and -10 promoter elements. A typical MerR regulator is comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules such as metal ions, drugs, and organic substrates.
Probab=50.27 E-value=53 Score=22.93 Aligned_cols=40 Identities=18% Similarity=0.190 Sum_probs=31.8
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040215 70 PREEVEIRIEEMKEVNSKTLEKLEKEKETVLAQMNELKKI 109 (123)
Q Consensus 70 ~~~~a~e~LE~~~e~~~~ei~~le~~~~~i~~~m~eLK~~ 109 (123)
+.+.....|+...+.+++++..++.....+...+..++..
T Consensus 76 ~~~~~~~~l~~~~~~l~~~i~~l~~~~~~l~~~~~~~~~~ 115 (116)
T cd04769 76 PWPHLQQALEDKKQEIRAQITELQQLLARLDAFEASLKDA 115 (116)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 4566778888888888888888888888888887777643
No 83
>PRK08724 fliD flagellar capping protein; Validated
Probab=50.24 E-value=38 Score=31.56 Aligned_cols=36 Identities=17% Similarity=0.183 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 040215 80 EMKEVNSKTLEKLEKEKETVLAQMNELKKILYGKFR 115 (123)
Q Consensus 80 ~~~e~~~~ei~~le~~~~~i~~~m~eLK~~LYaKFG 115 (123)
.....+...+..+..++..++.+|..+-..||++|.
T Consensus 617 ~R~~sL~~~i~~l~dqi~~Le~Rle~~E~Ry~~QFt 652 (673)
T PRK08724 617 TREKSLREQNYRLNDDQVALDRRMESLEKRTHAKFA 652 (673)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345668888889999999999999999999999995
No 84
>PF03789 ELK: ELK domain ; InterPro: IPR005539 This domain is required for the nuclear localisation of these proteins []. All of these proteins are members of the Tale/Knox homeodomain family, a subfamily, containing homeobox IPR001356 from INTERPRO.; GO: 0003677 DNA binding, 0005634 nucleus
Probab=49.96 E-value=5.4 Score=21.27 Aligned_cols=15 Identities=40% Similarity=0.527 Sum_probs=12.8
Q ss_pred HHHHHHHHhcCCCCC
Q 040215 105 ELKKILYGKFRDSIN 119 (123)
Q Consensus 105 eLK~~LYaKFG~~IN 119 (123)
+||.+|-.|||..|.
T Consensus 1 ELK~~LlrkY~g~i~ 15 (22)
T PF03789_consen 1 ELKHQLLRKYSGYIS 15 (22)
T ss_pred CHHHHHHHHHhHhHH
Confidence 589999999998773
No 85
>TIGR01149 mtrG N5-methyltetrahydromethanopterin:coenzyme M methyltransferase subunit G. coenzyme M methyltransferase subunit G in methanogenic archaea. This methyltranfersae is membrane-associated enzyme complex that uses methyl-transfer reaction to drive sodium-ion pump. Archaea have evolved energy-yielding pathways marked by one-carbon biochemistry featuring novel cofactors and enzymes. This transferase is involved in the transfer of 'methyl' group from N5-methyltetrahydromethanopterin to coenzyme M. In an accompanying reaction, methane is produced by two-electron reduction of the methyl moiety in methyl-coenzyme M by another enzyme methyl-coenzyme M reductase.
Probab=49.80 E-value=31 Score=23.34 Aligned_cols=31 Identities=3% Similarity=0.132 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC
Q 040215 88 TLEKLEKEKETVLAQMNELKKILYGKFRDSI 118 (123)
Q Consensus 88 ei~~le~~~~~i~~~m~eLK~~LYaKFG~~I 118 (123)
+..++.+++++++.+..---..+|.|+|.+|
T Consensus 13 d~~~i~~rLd~iEeKVEf~~~E~~Qr~Gkk~ 43 (70)
T TIGR01149 13 EFNEVMKRLDEIEEKVEFVNGEVAQRIGKKV 43 (70)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHh
Confidence 3344444555555555555556677777665
No 86
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=49.67 E-value=63 Score=20.24 Aligned_cols=35 Identities=26% Similarity=0.349 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040215 78 IEEMKEVNSKTLEKLEKEKETVLAQMNELKKILYG 112 (123)
Q Consensus 78 LE~~~e~~~~ei~~le~~~~~i~~~m~eLK~~LYa 112 (123)
-....+.++..+..|+.+...+..++..|+..+.+
T Consensus 24 Kk~~~~~Le~~~~~L~~en~~L~~~~~~L~~~~~~ 58 (64)
T PF00170_consen 24 KKQYIEELEEKVEELESENEELKKELEQLKKEIQS 58 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556678888888888888888888888876543
No 87
>PRK14127 cell division protein GpsB; Provisional
Probab=49.58 E-value=94 Score=22.42 Aligned_cols=46 Identities=26% Similarity=0.396 Sum_probs=32.4
Q ss_pred eeecChhHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040215 66 FAHVPREEVEIRIEEM---KEVNSKTLEKLEKEKETVLAQMNELKKILY 111 (123)
Q Consensus 66 Fv~~~~~~a~e~LE~~---~e~~~~ei~~le~~~~~i~~~m~eLK~~LY 111 (123)
|-=.+.+++.+.|+.- .+.+..++..|..++..++.++.+++.++=
T Consensus 20 ~RGYd~~EVD~FLd~V~~dye~l~~e~~~Lk~e~~~l~~~l~e~~~~~~ 68 (109)
T PRK14127 20 MRGYDQDEVDKFLDDVIKDYEAFQKEIEELQQENARLKAQVDELTKQVS 68 (109)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 6667788887777643 455567777777777777777777776553
No 88
>PF03148 Tektin: Tektin family; InterPro: IPR000435 Tektin heteropolymers form unique protofilaments of flagellar microtubules []. The proteins are predicted to form extended rods composed of 2 alpha- helical segments (~180 residues long) capable of forming coiled coils, interrupted by non-helical linkers []. The 2 segments are similar in sequence, indicating a gene duplication event. Along each tektin rod, cysteine residues occur with a periodicity of ~8nm, coincident with the axial repeat of tubulin dimers in microtubules []. It is proposed that the assembly of tektin heteropolymers produces filaments with repeats of 8, 16, 24, 32, 40, 48 and 96nm, generating the basis for the complex spatial arrangements of axonemal components [].; GO: 0000226 microtubule cytoskeleton organization, 0005874 microtubule
Probab=49.33 E-value=1.3e+02 Score=25.63 Aligned_cols=91 Identities=21% Similarity=0.250 Sum_probs=57.3
Q ss_pred HHhhHHHHHHHHHHHHHhhhhhhhhhhhh-hcCC--CccceeeecceeeecChhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040215 22 LNNRFHELEDEIKFAKETNDNLEDAGNEL-ILTD--EDIVRFQIGEVFAHVPREEVEIRIEEMKEVNSKTLEKLEKEKET 98 (123)
Q Consensus 22 Ln~r~~~l~~~l~~~k~~le~L~Da~~El-L~dd--d~~i~ykiGe~Fv~~~~~~a~e~LE~~~e~~~~ei~~le~~~~~ 98 (123)
|...+.++..++..+...+..|+.|..-+ ..-. .+-..+.=|-.=+.+-.|.|...|-+..+-+..--..|+..++.
T Consensus 62 L~~~l~~~~~Ei~~L~~~K~~le~aL~~~~~pl~i~~ecL~~R~~R~~~dlv~D~ve~eL~kE~~li~~~~~lL~~~l~~ 141 (384)
T PF03148_consen 62 LERELEELDEEIDLLEEEKRRLEKALEALRKPLSIAQECLSLREKRPGIDLVHDEVEKELLKEVELIENIKRLLQRTLEQ 141 (384)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHhCCCCcccCCCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444455566666666666666655444 2110 00111111222234557889999999999999888889999999
Q ss_pred HHHHHHHHHHHHHH
Q 040215 99 VLAQMNELKKILYG 112 (123)
Q Consensus 99 i~~~m~eLK~~LYa 112 (123)
+..+|..|+..-|.
T Consensus 142 ~~eQl~~lr~ar~~ 155 (384)
T PF03148_consen 142 AEEQLRLLRAARYR 155 (384)
T ss_pred HHHHHHHHHHHHHH
Confidence 99999988887663
No 89
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=49.31 E-value=1.3e+02 Score=23.74 Aligned_cols=38 Identities=18% Similarity=0.247 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040215 75 EIRIEEMKEVNSKTLEKLEKEKETVLAQMNELKKILYG 112 (123)
Q Consensus 75 ~e~LE~~~e~~~~ei~~le~~~~~i~~~m~eLK~~LYa 112 (123)
..++++.....+.+++.|+.+++.+..-..+|--.+|.
T Consensus 72 ~~~l~~~v~~q~~el~~L~~qi~~~~~~~~~l~p~m~~ 109 (251)
T PF11932_consen 72 NEQLERQVASQEQELASLEQQIEQIEETRQELVPLMEQ 109 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666666677777777777777777777776665553
No 90
>COG2919 Septum formation initiator [Cell division and chromosome partitioning]
Probab=49.19 E-value=33 Score=24.53 Aligned_cols=49 Identities=29% Similarity=0.373 Sum_probs=27.5
Q ss_pred HHHhHHhhHHHHHHHHHHHHHhhhhhhhhhhhhhcCCCccceeeecceeeecChh
Q 040215 18 KFSKLNNRFHELEDEIKFAKETNDNLEDAGNELILTDEDIVRFQIGEVFAHVPRE 72 (123)
Q Consensus 18 ~FsrLn~r~~~l~~~l~~~k~~le~L~Da~~ElL~ddd~~i~ykiGe~Fv~~~~~ 72 (123)
+...|.++-..++++++.++...++++..+-.- .-+-+.||+|+.++.+
T Consensus 65 e~~~L~~~~~~l~~ei~~L~dg~~~i~e~AR~~------l~~~~~gEi~f~i~~~ 113 (117)
T COG2919 65 ELEKLSARNTALEAEIKDLKDGRDYIEERARSE------LGMSKPGEIFFRLVKP 113 (117)
T ss_pred HHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHH------hCCCCCCCEEEEeccc
Confidence 445566666666666666666655554433322 1244567777777654
No 91
>cd07596 BAR_SNX The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=48.37 E-value=44 Score=24.61 Aligned_cols=32 Identities=22% Similarity=0.348 Sum_probs=16.5
Q ss_pred HHhHHhhHHHHHHHHHHHHHhhhhhhhhhhhh
Q 040215 19 FSKLNNRFHELEDEIKFAKETNDNLEDAGNEL 50 (123)
Q Consensus 19 FsrLn~r~~~l~~~l~~~k~~le~L~Da~~El 50 (123)
|.........++..++.+......+-....++
T Consensus 6 f~~~~~~v~~le~~l~~l~~~~~~~~k~~~~l 37 (218)
T cd07596 6 FEEAKDYILKLEEQLKKLSKQAQRLVKRRREL 37 (218)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555555555555555544444444
No 92
>PF04201 TPD52: Tumour protein D52 family; InterPro: IPR007327 The hD52 gene was originally identified through its elevated expression level in human breast carcinoma. Cloning of D52 homologues from other species has indicated that D52 may play roles in calcium-mediated signal transduction and cell proliferation. Two human homologues of hD52, hD53 and hD54, have also been identified, demonstrating the existence of a novel gene/protein family []. These proteins have an N-terminal coiled-coil that allows members to form homo- and heterodimers with each other [].
Probab=48.19 E-value=40 Score=26.11 Aligned_cols=29 Identities=31% Similarity=0.437 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 040215 79 EEMKEVNSKTLEKLEKEKETVLAQMNELKKILYGKF 114 (123)
Q Consensus 79 E~~~e~~~~ei~~le~~~~~i~~~m~eLK~~LYaKF 114 (123)
|+.++++..++.++++ ++.-|+.+|+||.
T Consensus 28 EeE~eeLr~EL~KvEe-------EI~TLrqvL~aKe 56 (162)
T PF04201_consen 28 EEEREELRSELAKVEE-------EIQTLRQVLAAKE 56 (162)
T ss_pred HHHHHHHHHHHHHHHH-------HHHHHHHHHHHHH
Confidence 4455555555555544 4556777777764
No 93
>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox []. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=48.16 E-value=62 Score=19.69 Aligned_cols=35 Identities=11% Similarity=0.212 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040215 77 RIEEMKEVNSKTLEKLEKEKETVLAQMNELKKILY 111 (123)
Q Consensus 77 ~LE~~~e~~~~ei~~le~~~~~i~~~m~eLK~~LY 111 (123)
+||.+-+.+.+..+.|..+.+.+..+-..|++.+=
T Consensus 2 QlE~Dy~~LK~~yd~Lk~~~~~L~~E~~~L~aev~ 36 (45)
T PF02183_consen 2 QLERDYDALKASYDSLKAEYDSLKKENEKLRAEVQ 36 (45)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57888888888889999998888888888887763
No 94
>PRK00578 prfB peptide chain release factor 2; Validated
Probab=47.88 E-value=1.8e+02 Score=25.16 Aligned_cols=39 Identities=23% Similarity=0.336 Sum_probs=22.3
Q ss_pred cHHHHHHhHHHHhHHhhHHHHHHHHHHHHHhhhhhhhhh
Q 040215 9 TWEDQQNINKFSKLNNRFHELEDEIKFAKETNDNLEDAG 47 (123)
Q Consensus 9 t~EDQqkIN~FsrLn~r~~~l~~~l~~~k~~le~L~Da~ 47 (123)
-|.|+.+..+.++-.+.+..+-..++..+...+.+.++.
T Consensus 44 ~~~d~~~~~~l~ke~~~L~~iv~~~~~l~~~~~e~~~~~ 82 (367)
T PRK00578 44 FWNDQERAQKVTKELSSLKAKLDTLEELRQRLDDLEELL 82 (367)
T ss_pred cccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467777766665555555555555555555555555444
No 95
>PF04210 MtrG: Tetrahydromethanopterin S-methyltransferase, subunit G ; InterPro: IPR005866 This model describes the N5-methyltetrahydromethanopterin: coenzyme M methyltransferase subunit G in methanogenic archaea. This methyltranferase is a membrane-associated enzyme complex that uses methyl-transfer reaction to drive a sodium-ion pump. Archaea have evolved energy-yielding pathways marked by one-carbon biochemistry featuring novel cofactors and enzymes. This transferase is involved in the transfer of a methyl group from N5-methyltetrahydromethanopterin to coenzyme M. In an accompanying reaction, methane is produced by two-electron reduction of the methyl moiety in methyl-coenzyme M by another enzyme methyl-coenzyme M reductase.; GO: 0030269 tetrahydromethanopterin S-methyltransferase activity, 0015948 methanogenesis, 0016021 integral to membrane
Probab=47.61 E-value=36 Score=23.00 Aligned_cols=30 Identities=7% Similarity=0.107 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCC
Q 040215 89 LEKLEKEKETVLAQMNELKKILYGKFRDSI 118 (123)
Q Consensus 89 i~~le~~~~~i~~~m~eLK~~LYaKFG~~I 118 (123)
..++.+++++++++..---..+|.|.|.+|
T Consensus 14 ~~~i~~rLd~iEeKvEf~~~Ei~Qr~Gkki 43 (70)
T PF04210_consen 14 FNEIMKRLDEIEEKVEFTNAEIAQRAGKKI 43 (70)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHhHHh
Confidence 334444444455555555556677777665
No 96
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=47.58 E-value=77 Score=25.75 Aligned_cols=92 Identities=13% Similarity=0.186 Sum_probs=55.1
Q ss_pred HHHhHHhhHHHHHHHHHHHHHhhhhhhhhhhhh--hcCCCc-----------------cceee--ecceeeecChhHH--
Q 040215 18 KFSKLNNRFHELEDEIKFAKETNDNLEDAGNEL--ILTDED-----------------IVRFQ--IGEVFAHVPREEV-- 74 (123)
Q Consensus 18 ~FsrLn~r~~~l~~~l~~~k~~le~L~Da~~El--L~ddd~-----------------~i~yk--iGe~Fv~~~~~~a-- 74 (123)
+.+.+++++.+.+.-+..+...|..+......- ..+... ..|-. +|. -+....
T Consensus 7 ~l~~l~~~~~~~~~L~~kLE~DL~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~g~~sp~ss~~~~----~~~~siLp 82 (248)
T PF08172_consen 7 ELSELEAKLEEQKELNAKLENDLAKVQASSSASRSFNDGASMASGATRQIPNSGRSGSLSPTSSIIGG----GGDSSILP 82 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCCcccccccchhhccCccccCCCCCCccCCCC----CCcccHHH
Confidence 466778888888888888888887777543222 111100 01111 000 111112
Q ss_pred -----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHh
Q 040215 75 -----EIRIEEMKEVNSKTLEKLEKEKETVLAQMNELKK---ILYGK 113 (123)
Q Consensus 75 -----~e~LE~~~e~~~~ei~~le~~~~~i~~~m~eLK~---~LYaK 113 (123)
..+.-....++++++......+..++.++..||+ .||.|
T Consensus 83 IVtsQRDRFR~Rn~ELE~elr~~~~~~~~L~~Ev~~L~~DN~kLYEK 129 (248)
T PF08172_consen 83 IVTSQRDRFRQRNAELEEELRKQQQTISSLRREVESLRADNVKLYEK 129 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556666677777888888888888888888884 58876
No 97
>PF02090 SPAM: Salmonella surface presentation of antigen gene type M protein; InterPro: IPR002954 The Salmonella typhimurium Surface Presentation of Antigens M gene (SpaM) is one of 12 that form a cluster responsible for invasion properties []. The gene product is required for entry by the bacterium into epithelial cells, and is thus considered to be a virulence factor []. Other Spa genes in the cluster are related to invasion (Inv) genes in similar Salmonella and Shigella species [], and flagella biosynthesis genes in Helicobacter pylori []. A homologue of this protein has been found recently in Salmonella enterica []. The protein, named InvI, is required by the organism to gain access to mammalian epithelial cells, and cellular mutants (InvI-) failed to successfully infect these cells. It has also been found that the inv-spa loci of this particular species encode for a type III protein secretion system, essential in the bacterium's host cell invasion process [].
Probab=47.40 E-value=1.1e+02 Score=23.48 Aligned_cols=43 Identities=23% Similarity=0.224 Sum_probs=38.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 040215 71 REEVEIRIEEMKEVNSKTLEKLEKEKETVLAQMNELKKILYGK 113 (123)
Q Consensus 71 ~~~a~e~LE~~~e~~~~ei~~le~~~~~i~~~m~eLK~~LYaK 113 (123)
+.-+..+++...-.+..+-..|..+...+..+.+.||..||+.
T Consensus 14 c~~~~~rCe~~L~ql~~e~~~L~~ee~~~~~Q~~~L~~LL~~~ 56 (147)
T PF02090_consen 14 CEMFQSRCEQALLQLQREEQKLDAEEEAIEEQRAGLQSLLDTQ 56 (147)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456788999999999999999999999999999999999986
No 98
>PRK02793 phi X174 lysis protein; Provisional
Probab=47.39 E-value=57 Score=21.56 Aligned_cols=25 Identities=8% Similarity=0.178 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 040215 83 EVNSKTLEKLEKEKETVLAQMNELK 107 (123)
Q Consensus 83 e~~~~ei~~le~~~~~i~~~m~eLK 107 (123)
..-+..|+.|...+.-+..++.++.
T Consensus 32 ~~Qq~~I~~L~~~l~~L~~rl~~~~ 56 (72)
T PRK02793 32 TAHEMEMAKLRDHLRLLTEKLKASQ 56 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 3344444444444444444444433
No 99
>TIGR03592 yidC_oxa1_cterm membrane protein insertase, YidC/Oxa1 family, C-terminal domain. This model describes full-length from some species, and the C-terminal region only from other species, of the YidC/Oxa1 family of proteins. This domain appears to be univeral among bacteria (although absent from Archaea). The well-characterized YidC protein from Escherichia coli and its close homologs contain a large N-terminal periplasmic domain in addition to the region modeled here.
Probab=47.38 E-value=66 Score=24.30 Aligned_cols=43 Identities=7% Similarity=0.041 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Q 040215 75 EIRIEEMKEVNSKTLEKLEKEKETVLAQMNELKKILYGKFRDS 117 (123)
Q Consensus 75 ~e~LE~~~e~~~~ei~~le~~~~~i~~~m~eLK~~LYaKFG~~ 117 (123)
+.+-.+....++-+++++.++..+-+.++++--..||.|.|=+
T Consensus 24 ~~~~~~km~~i~P~~~~i~~k~k~~~~~~~~e~~~l~k~~~~~ 66 (181)
T TIGR03592 24 QYKSMRKMQELQPKLKEIQEKYKDDPQKLQQEMMKLYKEEGVN 66 (181)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHhhHHHHHHHHHHHHHHhCCC
Confidence 4444455667888888888888776777777788999999843
No 100
>PRK02224 chromosome segregation protein; Provisional
Probab=47.01 E-value=2.4e+02 Score=26.06 Aligned_cols=35 Identities=23% Similarity=0.342 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040215 76 IRIEEMKEVNSKTLEKLEKEKETVLAQMNELKKIL 110 (123)
Q Consensus 76 e~LE~~~e~~~~ei~~le~~~~~i~~~m~eLK~~L 110 (123)
+.++.....+...+..++.++..+..++.+++..+
T Consensus 254 ~~l~~~~~~l~~~i~~~e~~~~~l~~~i~~~~~~~ 288 (880)
T PRK02224 254 ETLEAEIEDLRETIAETEREREELAEEVRDLRERL 288 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444555555555555555555555555554433
No 101
>PRK01026 tetrahydromethanopterin S-methyltransferase subunit G; Provisional
Probab=46.94 E-value=35 Score=23.45 Aligned_cols=28 Identities=4% Similarity=0.239 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCC
Q 040215 91 KLEKEKETVLAQMNELKKILYGKFRDSI 118 (123)
Q Consensus 91 ~le~~~~~i~~~m~eLK~~LYaKFG~~I 118 (123)
++.+++++++.+..--=..+|.|+|.+|
T Consensus 19 ~i~~rLD~iEeKVEftn~Ei~Qr~Gkkv 46 (77)
T PRK01026 19 EIQKRLDEIEEKVEFTNAEIFQRIGKKV 46 (77)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHh
Confidence 3333444444444444445666666654
No 102
>PRK06746 peptide chain release factor 2; Provisional
Probab=46.89 E-value=1.8e+02 Score=24.76 Aligned_cols=36 Identities=19% Similarity=0.387 Sum_probs=20.7
Q ss_pred cHHHHHHhHHHHhHHhhHHHHHHHHHHHHHhhhhhhhhh
Q 040215 9 TWEDQQNINKFSKLNNRFHELEDEIKFAKETNDNLEDAG 47 (123)
Q Consensus 9 t~EDQqkIN~FsrLn~r~~~l~~~l~~~k~~le~L~Da~ 47 (123)
-|.||++.-+.++ ++..|+.-+....+-...++|+.
T Consensus 6 fw~d~~~~~~~~k---e~~~l~~~v~~~~~~~~~~~d~~ 41 (326)
T PRK06746 6 FWDDQQGAQAVIN---EANALKDMVGKFRQLDETFENLE 41 (326)
T ss_pred hhcCHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHH
Confidence 4888887555544 55555555555555555555555
No 103
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=46.83 E-value=79 Score=29.10 Aligned_cols=38 Identities=26% Similarity=0.272 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040215 75 EIRIEEMKEVNSKTLEKLEKEKETVLAQMNELKKILYG 112 (123)
Q Consensus 75 ~e~LE~~~e~~~~ei~~le~~~~~i~~~m~eLK~~LYa 112 (123)
....+...+.+..++++.+++++.++.+-.+||.++=-
T Consensus 289 ~~~~~~~l~~l~~Eie~kEeE~e~lq~~~d~Lk~~Ie~ 326 (581)
T KOG0995|consen 289 KQHMEKKLEMLKSEIEEKEEEIEKLQKENDELKKQIEL 326 (581)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44566777788899999999999999999999987643
No 104
>PHA01750 hypothetical protein
Probab=46.54 E-value=91 Score=21.14 Aligned_cols=36 Identities=17% Similarity=0.264 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040215 75 EIRIEEMKEVNSKTLEKLEKEKETVLAQMNELKKIL 110 (123)
Q Consensus 75 ~e~LE~~~e~~~~ei~~le~~~~~i~~~m~eLK~~L 110 (123)
.+-.......+..++..+.-+.+.++.+..++|+.+
T Consensus 37 keIV~~ELdNL~~ei~~~kikqDnl~~qv~eik~k~ 72 (75)
T PHA01750 37 KEIVNSELDNLKTEIEELKIKQDELSRQVEEIKRKL 72 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhh
Confidence 444455556777777777788888888888888765
No 105
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=46.36 E-value=1e+02 Score=22.83 Aligned_cols=33 Identities=27% Similarity=0.262 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040215 78 IEEMKEVNSKTLEKLEKEKETVLAQMNELKKIL 110 (123)
Q Consensus 78 LE~~~e~~~~ei~~le~~~~~i~~~m~eLK~~L 110 (123)
++.....++..+..|+.+++.+...+.++|..|
T Consensus 33 ~E~EI~sL~~K~~~lE~eld~~~~~l~~~k~~l 65 (143)
T PF12718_consen 33 KEQEITSLQKKNQQLEEELDKLEEQLKEAKEKL 65 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444555555555555555555555555443
No 106
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=45.54 E-value=68 Score=28.80 Aligned_cols=24 Identities=13% Similarity=0.050 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 040215 87 KTLEKLEKEKETVLAQMNELKKIL 110 (123)
Q Consensus 87 ~ei~~le~~~~~i~~~m~eLK~~L 110 (123)
+....++.++++++.+...|+.++
T Consensus 97 aq~~dle~KIkeLEaE~~~Lk~Ql 120 (475)
T PRK13729 97 KQRGDDQRRIEKLGQDNAALAEQV 120 (475)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHH
Confidence 444456666667777777777776
No 107
>PRK00591 prfA peptide chain release factor 1; Validated
Probab=45.29 E-value=2e+02 Score=24.76 Aligned_cols=38 Identities=24% Similarity=0.358 Sum_probs=20.4
Q ss_pred cHHHHHHhHHHHhHHhhHHHHHHHHHHHHHhhhhhhhh
Q 040215 9 TWEDQQNINKFSKLNNRFHELEDEIKFAKETNDNLEDA 46 (123)
Q Consensus 9 t~EDQqkIN~FsrLn~r~~~l~~~l~~~k~~le~L~Da 46 (123)
-|.|+.+..+-++=++++..+-..+..++.....+.++
T Consensus 27 ~w~d~~~~~~~~~e~~~L~~~v~~~~~~~~~~~~~~~~ 64 (359)
T PRK00591 27 VISDQKRFRKLSKEYAELEPIVEAYREYKQAQEDLEEA 64 (359)
T ss_pred cccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36777776666554455544444444444444444443
No 108
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=45.10 E-value=1.5e+02 Score=24.64 Aligned_cols=37 Identities=19% Similarity=0.415 Sum_probs=28.9
Q ss_pred HHhHHHHhHHhhHHHHHHHHHHHHHhhhhhhhhhhhh
Q 040215 14 QNINKFSKLNNRFHELEDEIKFAKETNDNLEDAGNEL 50 (123)
Q Consensus 14 qkIN~FsrLn~r~~~l~~~l~~~k~~le~L~Da~~El 50 (123)
|+|-.++-+-.++.+++..+....++++.|-+--+|+
T Consensus 125 ~~v~~~~d~ke~~ee~kekl~E~~~EkeeL~~eleel 161 (290)
T COG4026 125 QRVPEYMDLKEDYEELKEKLEELQKEKEELLKELEEL 161 (290)
T ss_pred hccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5677888888888888888888888887776665555
No 109
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=44.51 E-value=1.2e+02 Score=22.41 Aligned_cols=35 Identities=11% Similarity=0.238 Sum_probs=16.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040215 72 EEVEIRIEEMKEVNSKTLEKLEKEKETVLAQMNEL 106 (123)
Q Consensus 72 ~~a~e~LE~~~e~~~~ei~~le~~~~~i~~~m~eL 106 (123)
+.+-+.|...+..+..+|+.+..++++..+-.+..
T Consensus 53 ~~vs~~l~~tKkhLsqRId~vd~klDe~~ei~~~i 87 (126)
T PF07889_consen 53 EQVSESLSSTKKHLSQRIDRVDDKLDEQKEISKQI 87 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 34444444555555555555555444444333333
No 110
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=44.02 E-value=34 Score=25.43 Aligned_cols=34 Identities=18% Similarity=0.233 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040215 75 EIRIEEMKEVNSKTLEKLEKEKETVLAQMNELKK 108 (123)
Q Consensus 75 ~e~LE~~~e~~~~ei~~le~~~~~i~~~m~eLK~ 108 (123)
...+......+..++..+..++..+..+++.|.+
T Consensus 74 l~~ld~ei~~L~~el~~l~~~~k~l~~eL~~L~~ 107 (169)
T PF07106_consen 74 LAELDAEIKELREELAELKKEVKSLEAELASLSS 107 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3344444666666666666666666666665554
No 111
>PF03980 Nnf1: Nnf1 ; InterPro: IPR007128 NNF1 is an essential yeast gene required for proper spindle orientation, nucleolar and nuclear envelope structure and mRNA export [].
Probab=43.75 E-value=1.1e+02 Score=21.14 Aligned_cols=29 Identities=24% Similarity=0.426 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040215 79 EEMKEVNSKTLEKLEKEKETVLAQMNELK 107 (123)
Q Consensus 79 E~~~e~~~~ei~~le~~~~~i~~~m~eLK 107 (123)
....+.+...+..++.+-..+..++.+++
T Consensus 79 ~~~~~~L~~~l~~l~~eN~~L~~~i~~~r 107 (109)
T PF03980_consen 79 KKEREQLNARLQELEEENEALAEEIQEQR 107 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34444455555555555555555544443
No 112
>PRK14127 cell division protein GpsB; Provisional
Probab=43.28 E-value=1.2e+02 Score=21.92 Aligned_cols=32 Identities=9% Similarity=0.005 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040215 75 EIRIEEMKEVNSKTLEKLEKEKETVLAQMNEL 106 (123)
Q Consensus 75 ~e~LE~~~e~~~~ei~~le~~~~~i~~~m~eL 106 (123)
-+.+.+....++.++..|+.++.+.+.+....
T Consensus 39 ye~l~~e~~~Lk~e~~~l~~~l~e~~~~~~~~ 70 (109)
T PRK14127 39 YEAFQKEIEELQQENARLKAQVDELTKQVSVG 70 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 34455666677777777777777777666544
No 113
>PF05615 THOC7: Tho complex subunit 7; InterPro: IPR008501 The Tho complex (THOC) is involved in transcription elongation and mRNA export from the nucleus []. This entry represents the subunit THOC7, which is found in higher eukaryotes, and the non-homologous subunit Mft1p found in yeast. The funtions of these subunits are unknown, and it is not known if these subunits are functionally equivalent.
Probab=43.18 E-value=1.2e+02 Score=21.81 Aligned_cols=30 Identities=30% Similarity=0.356 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040215 81 MKEVNSKTLEKLEKEKETVLAQMNELKKIL 110 (123)
Q Consensus 81 ~~e~~~~ei~~le~~~~~i~~~m~eLK~~L 110 (123)
..+..+..-..++..+...+..+.+||..|
T Consensus 75 e~e~Y~~~~~~i~~~i~~~k~~ie~lk~~L 104 (139)
T PF05615_consen 75 ERENYEQLNEEIEQEIEQAKKEIEELKEEL 104 (139)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444455555444
No 114
>KOG2189 consensus Vacuolar H+-ATPase V0 sector, subunit a [Energy production and conversion]
Probab=43.03 E-value=3.2e+02 Score=26.39 Aligned_cols=80 Identities=25% Similarity=0.330 Sum_probs=56.6
Q ss_pred HHHhHHhhHHHHHHHHHHHHHhhhhhhhhhhhh-hcCCCccceeeecceeeecChhHHHHHHHHHHHHHHHHHHHHHHHH
Q 040215 18 KFSKLNNRFHELEDEIKFAKETNDNLEDAGNEL-ILTDEDIVRFQIGEVFAHVPREEVEIRIEEMKEVNSKTLEKLEKEK 96 (123)
Q Consensus 18 ~FsrLn~r~~~l~~~l~~~k~~le~L~Da~~El-L~ddd~~i~ykiGe~Fv~~~~~~a~e~LE~~~e~~~~ei~~le~~~ 96 (123)
+|.+=-.|.++++..+.-+..++.. .++ +.+-| -....|.......+|+..+++++++-++.+-.
T Consensus 50 ~fv~evrRcdemeRklrfl~~ei~k-----~~i~~~~~~---------~~~~~p~~~~i~dle~~l~klE~el~eln~n~ 115 (829)
T KOG2189|consen 50 KFVNEVRRCDEMERKLRFLESEIKK-----AGIPLPDLD---------ESPPAPPPREIIDLEEQLEKLESELRELNANK 115 (829)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh-----cCCCCCCcc---------ccCCCCCchHHHHHHHHHHHHHHHHHHHHhhH
Confidence 4555667788888877777766654 133 32111 23336777888889999999999999999988
Q ss_pred HHHHHHHHHHHHHHH
Q 040215 97 ETVLAQMNELKKILY 111 (123)
Q Consensus 97 ~~i~~~m~eLK~~LY 111 (123)
+.++....+|+-..|
T Consensus 116 ~~L~~n~~eL~E~~~ 130 (829)
T KOG2189|consen 116 EALKANYNELLELKY 130 (829)
T ss_pred HHHHHHHHHHHHHHH
Confidence 888888877776654
No 115
>PRK05771 V-type ATP synthase subunit I; Validated
Probab=42.61 E-value=2.6e+02 Score=25.25 Aligned_cols=32 Identities=34% Similarity=0.528 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040215 79 EEMKEVNSKTLEKLEKEKETVLAQMNELKKIL 110 (123)
Q Consensus 79 E~~~e~~~~ei~~le~~~~~i~~~m~eLK~~L 110 (123)
.+...++++++++++++++.++.++.++....
T Consensus 214 ~~~l~~l~~~l~~l~~~~~~~~~~l~~~~~~~ 245 (646)
T PRK05771 214 SELIREIKEELEEIEKERESLLEELKELAKKY 245 (646)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666777777777777777777777766543
No 116
>PF13815 Dzip-like_N: Iguana/Dzip1-like DAZ-interacting protein N-terminal
Probab=42.22 E-value=1.2e+02 Score=21.41 Aligned_cols=25 Identities=24% Similarity=0.353 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 040215 84 VNSKTLEKLEKEKETVLAQMNELKK 108 (123)
Q Consensus 84 ~~~~ei~~le~~~~~i~~~m~eLK~ 108 (123)
.+..+++.+...+.....+++.||.
T Consensus 91 ~~~~~~~~l~~~~~~~~~~~k~lk~ 115 (118)
T PF13815_consen 91 ELQQEIEKLKQKLKKQKEEIKKLKK 115 (118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444443
No 117
>PF06825 HSBP1: Heat shock factor binding protein 1; InterPro: IPR009643 Heat shock factor binding protein 1 (HSBP1) appears to be a negative regulator of the heat shock response [].; PDB: 3CI9_A.
Probab=41.86 E-value=26 Score=22.41 Aligned_cols=44 Identities=7% Similarity=0.188 Sum_probs=27.6
Q ss_pred eeecChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040215 66 FAHVPREEVEIRIEEMKEVNSKTLEKLEKEKETVLAQMNELKKI 109 (123)
Q Consensus 66 Fv~~~~~~a~e~LE~~~e~~~~ei~~le~~~~~i~~~m~eLK~~ 109 (123)
||.--..+.+.+.......+-.+|+....++++++.-+.+|..+
T Consensus 7 ~v~~lL~qmq~kFq~mS~~I~~riDeM~~RIDdLE~si~dl~~q 50 (54)
T PF06825_consen 7 FVQNLLQQMQDKFQTMSDQILGRIDEMSSRIDDLEKSIADLMTQ 50 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHH------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 33333456667777777778888888888888888888877653
No 118
>PF05103 DivIVA: DivIVA protein; InterPro: IPR007793 The Bacillus subtilis divIVA1 mutation causes misplacement of the septum during cell division, resulting in the formation of small, circular, anucleate minicells []. Inactivation of divIVA produces a minicell phenotype, whereas overproduction of DivIVA results in a filamentation phenotype []. These proteins appear to contain coiled-coils.; PDB: 2WUK_C 2WUJ_A.
Probab=40.94 E-value=15 Score=25.63 Aligned_cols=45 Identities=27% Similarity=0.358 Sum_probs=0.0
Q ss_pred ceeeecChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040215 64 EVFAHVPREEVEIRIEEMKEVNSKTLEKLEKEKETVLAQMNELKK 108 (123)
Q Consensus 64 e~Fv~~~~~~a~e~LE~~~e~~~~ei~~le~~~~~i~~~m~eLK~ 108 (123)
+--+..-..+|...+.........-++.-..+...+..++..||.
T Consensus 77 ~~~~~~A~~eA~~i~~~A~~~a~~i~~~A~~~~~~l~~~~~~lk~ 121 (131)
T PF05103_consen 77 DEIKAEAEEEAEEIIEEAQKEAEEIIEEARAEAERLREEIEELKR 121 (131)
T ss_dssp ---------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445566677777777777777777777777777777777774
No 119
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=40.89 E-value=66 Score=23.87 Aligned_cols=50 Identities=16% Similarity=0.175 Sum_probs=32.0
Q ss_pred ecceeeecCh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040215 62 IGEVFAHVPR-EEVEIRIEEMKEVNSKTLEKLEKEKETVLAQMNELKKILY 111 (123)
Q Consensus 62 iGe~Fv~~~~-~~a~e~LE~~~e~~~~ei~~le~~~~~i~~~m~eLK~~LY 111 (123)
+|-.=|.+.. +.....=......++.++..|.+++..+....+.|.+.|=
T Consensus 53 ~GKqkiY~~~Q~~~~~~s~eel~~ld~ei~~L~~el~~l~~~~k~l~~eL~ 103 (169)
T PF07106_consen 53 YGKQKIYFANQDELEVPSPEELAELDAEIKELREELAELKKEVKSLEAELA 103 (169)
T ss_pred ecceEEEeeCccccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5655444433 3322222344667788888888888888888888887763
No 120
>PF06698 DUF1192: Protein of unknown function (DUF1192); InterPro: IPR009579 This family consists of several short, hypothetical, bacterial proteins of around 60 residues in length. The function of this family is unknown.
Probab=40.50 E-value=1e+02 Score=19.99 Aligned_cols=38 Identities=29% Similarity=0.358 Sum_probs=25.7
Q ss_pred eeecceeeecChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040215 60 FQIGEVFAHVPREEVEIRIEEMKEVNSKTLEKLEKEKETVLA 101 (123)
Q Consensus 60 ykiGe~Fv~~~~~~a~e~LE~~~e~~~~ei~~le~~~~~i~~ 101 (123)
..||.-.=.++.++..+++. .++.||..++..+..-..
T Consensus 12 ~~ig~dLs~lSv~EL~~RIa----~L~aEI~R~~~~~~~K~a 49 (59)
T PF06698_consen 12 HEIGEDLSLLSVEELEERIA----LLEAEIARLEAAIAKKSA 49 (59)
T ss_pred cccCCCchhcCHHHHHHHHH----HHHHHHHHHHHHHHHHHH
Confidence 34666666677766665555 788888888877765443
No 121
>PRK09737 EcoKI restriction-modification system protein HsdS; Provisional
Probab=40.39 E-value=1.3e+02 Score=24.82 Aligned_cols=52 Identities=23% Similarity=0.256 Sum_probs=41.3
Q ss_pred ecceeeecChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 040215 62 IGEVFAHVPREEVEIRIEEMKEVNSKTLEKLEKEKETVLAQMNELKKILYGK 113 (123)
Q Consensus 62 iGe~Fv~~~~~~a~e~LE~~~e~~~~ei~~le~~~~~i~~~m~eLK~~LYaK 113 (123)
+...-|.+|.-+-|+++......+.+.++.++..+....+.+.+||..|=.|
T Consensus 362 l~~l~IplPpl~EQ~kI~~~l~~l~~~~d~i~~~~~~~l~~L~~lKqslLqk 413 (461)
T PRK09737 362 LANYPIRVPPLEEQAEIVRRVEQLFAYADTIEKQVNNALARVNNLTQSILAK 413 (461)
T ss_pred HhcCcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5566788888888888888888888888888887777778888888877544
No 122
>PRK11637 AmiB activator; Provisional
Probab=40.18 E-value=2.3e+02 Score=24.06 Aligned_cols=39 Identities=10% Similarity=0.090 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040215 74 VEIRIEEMKEVNSKTLEKLEKEKETVLAQMNELKKILYG 112 (123)
Q Consensus 74 a~e~LE~~~e~~~~ei~~le~~~~~i~~~m~eLK~~LYa 112 (123)
....++.....++.+|+.++.++...+.++..++..|-.
T Consensus 90 ~i~~~~~~i~~~~~ei~~l~~eI~~~q~~l~~~~~~l~~ 128 (428)
T PRK11637 90 KLRETQNTLNQLNKQIDELNASIAKLEQQQAAQERLLAA 128 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455666667777777777777777777666655543
No 123
>PF05531 NPV_P10: Nucleopolyhedrovirus P10 protein; InterPro: IPR008702 This family consists of several nucleopolyhedrovirus P10 proteins which are thought to be involved in the morphogenesis of the polyhedra [].; GO: 0019028 viral capsid
Probab=40.02 E-value=81 Score=21.48 Aligned_cols=42 Identities=19% Similarity=0.255 Sum_probs=27.7
Q ss_pred HHHhHHHHhHHhhHHHHHHHHHHHHHhhhhhhhhhhhh--hcCC
Q 040215 13 QQNINKFSKLNNRFHELEDEIKFAKETNDNLEDAGNEL--ILTD 54 (123)
Q Consensus 13 QqkIN~FsrLn~r~~~l~~~l~~~k~~le~L~Da~~El--L~dd 54 (123)
|+.++.-..-.....+|..++......+..|+....+| ++..
T Consensus 24 q~~V~~l~~~~~~v~~l~~klDa~~~~l~~l~~~V~~I~~iL~~ 67 (75)
T PF05531_consen 24 QTQVDDLESNLPDVTELNKKLDAQSAQLTTLNTKVNEIQDILNP 67 (75)
T ss_pred HHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 55566666655666667777777777777777777777 5443
No 124
>TIGR02209 ftsL_broad cell division protein FtsL. This model represents FtsL, both forms similar to that in E. coli and similar to that in B. subtilis. FtsL is one of the later proteins active in cell division septum formation. FtsL is small, low in complexity, and highly divergent. The scope of this model is broader than that of the Pfam model pfam04999.3 for FtsL, as this one includes FtsL from Bacillus subtilis and related species.
Probab=39.88 E-value=59 Score=21.12 Aligned_cols=40 Identities=18% Similarity=0.242 Sum_probs=26.0
Q ss_pred cChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040215 69 VPREEVEIRIEEMKEVNSKTLEKLEKEKETVLAQMNELKK 108 (123)
Q Consensus 69 ~~~~~a~e~LE~~~e~~~~ei~~le~~~~~i~~~m~eLK~ 108 (123)
+..--....+......++.+++.++.+-+.++.+.+.|..
T Consensus 20 v~~~~~~~~~~~~~~~~~~~~~~l~~en~~L~~ei~~l~~ 59 (85)
T TIGR02209 20 VSAQHQTRQLNNELQKLQLEIDKLQKEWRDLQLEVAELSR 59 (85)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 3333344466666677777777777777777777776654
No 125
>KOG1760 consensus Molecular chaperone Prefoldin, subunit 4 [Posttranslational modification, protein turnover, chaperones]
Probab=39.77 E-value=1e+02 Score=23.21 Aligned_cols=65 Identities=11% Similarity=0.187 Sum_probs=43.4
Q ss_pred HHhhhhhhhhhhhh-hcCCCccceeeecceeeecChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040215 37 KETNDNLEDAGNEL-ILTDEDIVRFQIGEVFAHVPREEVEIRIEEMKEVNSKTLEKLEKEKETVLAQM 103 (123)
Q Consensus 37 k~~le~L~Da~~El-L~ddd~~i~ykiGe~Fv~~~~~~a~e~LE~~~e~~~~ei~~le~~~~~i~~~m 103 (123)
..+++-+++=+..| ..-.|.-+..+.-. +.--.++..+.+++..+.+.++++.+..++++++..+
T Consensus 53 ~~EieL~Dedd~~Ip~~vGdvF~~~~~~~--~~~~LEe~ke~l~k~i~~les~~e~I~~~m~~LK~~L 118 (131)
T KOG1760|consen 53 SNEIELLDEDDEDIPFKVGDVFIHVKLDK--LQDQLEEKKETLEKEIEELESELESISARMDELKKVL 118 (131)
T ss_pred HhhHhhcCccccccceehhhhheeccHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566666655455 44444434444333 3344677888888888899999999999988887754
No 126
>PF11336 DUF3138: Protein of unknown function (DUF3138); InterPro: IPR021485 This family of proteins with unknown function appear to be restricted to Proteobacteria.
Probab=39.52 E-value=43 Score=30.13 Aligned_cols=29 Identities=24% Similarity=0.345 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 040215 86 SKTLEKLEKEKETVLAQMNELKKILYGKF 114 (123)
Q Consensus 86 ~~ei~~le~~~~~i~~~m~eLK~~LYaKF 114 (123)
-.+|+.|..++..++.+|++|++.|=+|=
T Consensus 24 a~~i~~L~~ql~aLq~~v~eL~~~laa~~ 52 (514)
T PF11336_consen 24 ADQIKALQAQLQALQDQVNELRAKLAAKP 52 (514)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 35677888888888888899988887764
No 127
>PF10458 Val_tRNA-synt_C: Valyl tRNA synthetase tRNA binding arm; InterPro: IPR019499 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the C-terminal domain of Valyl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Valyl-tRNA synthetase (6.1.1.9 from EC) is an alpha monomer that belongs to class Ia.; GO: 0000166 nucleotide binding, 0004832 valine-tRNA ligase activity, 0005524 ATP binding, 0006438 valyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 1IVS_B 1GAX_B.
Probab=39.48 E-value=85 Score=20.00 Aligned_cols=18 Identities=39% Similarity=0.453 Sum_probs=7.4
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 040215 76 IRIEEMKEVNSKTLEKLE 93 (123)
Q Consensus 76 e~LE~~~e~~~~ei~~le 93 (123)
.+|++..+.++..+..++
T Consensus 7 ~rL~Kel~kl~~~i~~~~ 24 (66)
T PF10458_consen 7 ERLEKELEKLEKEIERLE 24 (66)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 334444444444444433
No 128
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=39.44 E-value=1.1e+02 Score=28.56 Aligned_cols=45 Identities=24% Similarity=0.351 Sum_probs=31.9
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 040215 70 PREEVEIRIEEMKEVNSKTLEKLEKEKETVLAQMNELKKILYGKF 114 (123)
Q Consensus 70 ~~~~a~e~LE~~~e~~~~ei~~le~~~~~i~~~m~eLK~~LYaKF 114 (123)
+.+...+.|+.....|+.+++++..+++.++.++.+++...+.+-
T Consensus 426 ~~~~~ve~l~~e~~~L~~~~ee~k~eie~L~~~l~~~~r~~~~~~ 470 (652)
T COG2433 426 KLEETVERLEEENSELKRELEELKREIEKLESELERFRREVRDKV 470 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445566677777777777777777777777777777777777543
No 129
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=38.95 E-value=1.6e+02 Score=24.56 Aligned_cols=36 Identities=33% Similarity=0.430 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040215 76 IRIEEMKEVNSKTLEKLEKEKETVLAQMNELKKILY 111 (123)
Q Consensus 76 e~LE~~~e~~~~ei~~le~~~~~i~~~m~eLK~~LY 111 (123)
..|+...+.+.+++..|+.+...+..++..|+..+.
T Consensus 53 ~~le~Ee~~l~~eL~~LE~e~~~l~~el~~le~e~~ 88 (314)
T PF04111_consen 53 EKLEQEEEELLQELEELEKEREELDQELEELEEELE 88 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555566666666666666666666666665544
No 130
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=38.87 E-value=83 Score=22.72 Aligned_cols=35 Identities=23% Similarity=0.154 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040215 75 EIRIEEMKEVNSKTLEKLEKEKETVLAQMNELKKI 109 (123)
Q Consensus 75 ~e~LE~~~e~~~~ei~~le~~~~~i~~~m~eLK~~ 109 (123)
...++.....+-+++..|...+.++-.+=..|+..
T Consensus 10 l~~le~~l~~l~~el~~LK~~~~el~EEN~~L~iE 44 (110)
T PRK13169 10 LDDLEQNLGVLLKELGALKKQLAELLEENTALRLE 44 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555566666666666666665555555543
No 131
>PF13166 AAA_13: AAA domain
Probab=38.54 E-value=1.3e+02 Score=26.97 Aligned_cols=32 Identities=22% Similarity=0.290 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040215 78 IEEMKEVNSKTLEKLEKEKETVLAQMNELKKI 109 (123)
Q Consensus 78 LE~~~e~~~~ei~~le~~~~~i~~~m~eLK~~ 109 (123)
++.....+...+..+...+..+..+..+|+..
T Consensus 422 ~~~~i~~~~~~~~~~~~~~~~~~~~i~~l~~~ 453 (712)
T PF13166_consen 422 LEKEINSLEKKLKKAKEEIKKIEKEIKELEAQ 453 (712)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444555555555555555555544
No 132
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=38.36 E-value=3.3e+02 Score=26.91 Aligned_cols=28 Identities=14% Similarity=0.214 Sum_probs=14.9
Q ss_pred HhhHHHHHHHHHHHHHhhhhhhhhhhhh
Q 040215 23 NNRFHELEDEIKFAKETNDNLEDAGNEL 50 (123)
Q Consensus 23 n~r~~~l~~~l~~~k~~le~L~Da~~El 50 (123)
..+...+..++...+..+..|..+..+|
T Consensus 933 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i 960 (1311)
T TIGR00606 933 ETSNKKAQDKVNDIKEKVKNIHGYMKDI 960 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344445555555555555555555555
No 133
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=37.96 E-value=58 Score=27.60 Aligned_cols=31 Identities=19% Similarity=0.137 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040215 82 KEVNSKTLEKLEKEKETVLAQMNELKKILYG 112 (123)
Q Consensus 82 ~e~~~~ei~~le~~~~~i~~~m~eLK~~LYa 112 (123)
.--+.+++.+-+.++.+-+.++.+||.+||-
T Consensus 70 iRHLkakLkes~~~l~dRetEI~eLksQL~R 100 (305)
T PF15290_consen 70 IRHLKAKLKESENRLHDRETEIDELKSQLAR 100 (305)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 3346666777777777788889999999984
No 134
>PRK10869 recombination and repair protein; Provisional
Probab=37.92 E-value=1.8e+02 Score=26.06 Aligned_cols=45 Identities=16% Similarity=0.022 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHhcCCCC
Q 040215 73 EVEIRIEEMKEVNSKTLEKLE----------KEKETVLAQMNELKKILYGKFRDSI 118 (123)
Q Consensus 73 ~a~e~LE~~~e~~~~ei~~le----------~~~~~i~~~m~eLK~~LYaKFG~~I 118 (123)
.+.+.|+.....++.-...|. .+++.++.++..|. .|--|||.+|
T Consensus 265 ~~~~~l~~~~~~l~~~~~~l~~~~~~~~~dp~~l~~ie~Rl~~l~-~L~rKyg~~~ 319 (553)
T PRK10869 265 GVLDMLEEALIQIQEASDELRHYLDRLDLDPNRLAELEQRLSKQI-SLARKHHVSP 319 (553)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHH-HHHHHhCCCH
Confidence 344444444444444444442 34577888888887 6788888765
No 135
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=37.12 E-value=1.2e+02 Score=19.74 Aligned_cols=31 Identities=29% Similarity=0.358 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040215 78 IEEMKEVNSKTLEKLEKEKETVLAQMNELKK 108 (123)
Q Consensus 78 LE~~~e~~~~ei~~le~~~~~i~~~m~eLK~ 108 (123)
.+......+.....|..++..++.+|.+++.
T Consensus 30 ~e~kLqeaE~rn~eL~~ei~~L~~e~ee~r~ 60 (61)
T PF08826_consen 30 FESKLQEAEKRNRELEQEIERLKKEMEELRS 60 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 4444556667777777777777777777764
No 136
>PF02096 60KD_IMP: 60Kd inner membrane protein; InterPro: IPR001708 This family of proteins is required for the insertion of integral membrane proteins into cellular membranes. Many of these integral membrane proteins are associated with respiratory chain complexes, for example a large number of members of this family play an essential role in the activity and assembly of cytochrome c oxidase. Stage III sporulation protein J (SP3J) is a probable lipoprotein, rich in basic and hydrophobic amino acids. Mutations in the protein abolish the transcription of prespore-specific genes transcribed by the sigma G form of RNA polymerase []. SP3J could be involved in a signal transduction pathway coupling gene expression in the prespore to events in the mother cell, or it may be necessary for essential metabolic interactions between the two cells []. The protein shows a high degree of similarity to Bacillus subtilis YQJG, to yeast OXA1 and also to bacterial 60 kDa inner-membrane proteins [, , , ]. ; GO: 0051205 protein insertion into membrane, 0016021 integral to membrane
Probab=37.11 E-value=1.2e+02 Score=22.72 Aligned_cols=42 Identities=14% Similarity=0.149 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 040215 74 VEIRIEEMKEVNSKTLEKLEKEKETVLAQMNELKKILYGKFR 115 (123)
Q Consensus 74 a~e~LE~~~e~~~~ei~~le~~~~~i~~~m~eLK~~LYaKFG 115 (123)
.+.+-.+....++-++.++.++..+-..++..-...||.|.|
T Consensus 24 ~~~~~~~k~~~~~P~l~~i~~k~~~~~~~~~~~~~~l~k~~~ 65 (198)
T PF02096_consen 24 KQQRSSAKMQELQPELKEIQEKYKEDQQKMQQEMQKLYKKHG 65 (198)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHcC
Confidence 344445666678888888888887777778877889999988
No 137
>PHA02562 46 endonuclease subunit; Provisional
Probab=36.56 E-value=2.8e+02 Score=23.90 Aligned_cols=42 Identities=14% Similarity=0.116 Sum_probs=24.5
Q ss_pred ceeeecceeeecChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040215 58 VRFQIGEVFAHVPREEVEIRIEEMKEVNSKTLEKLEKEKETVLA 101 (123)
Q Consensus 58 i~ykiGe~Fv~~~~~~a~e~LE~~~e~~~~ei~~le~~~~~i~~ 101 (123)
....+|..|-.. +.....|......++.++..++..+.++..
T Consensus 286 ~Cp~C~~~~~~~--~~~~~~l~d~i~~l~~~l~~l~~~i~~~~~ 327 (562)
T PHA02562 286 VCPTCTQQISEG--PDRITKIKDKLKELQHSLEKLDTAIDELEE 327 (562)
T ss_pred CCCCCCCcCCCc--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344566666554 455556666666666666666666653333
No 138
>PRK05589 peptide chain release factor 2; Provisional
Probab=36.36 E-value=2.5e+02 Score=23.94 Aligned_cols=39 Identities=10% Similarity=0.256 Sum_probs=23.7
Q ss_pred cHHHHHHhHHHHhHHhhHHHHHHHHHHHHHhhhhhhhhh
Q 040215 9 TWEDQQNINKFSKLNNRFHELEDEIKFAKETNDNLEDAG 47 (123)
Q Consensus 9 t~EDQqkIN~FsrLn~r~~~l~~~l~~~k~~le~L~Da~ 47 (123)
-|.|+.+..+.++=.+.+..+-..++.++...+.+.++.
T Consensus 6 ~w~d~~~~~~~~ke~~~l~~~v~~~~~~~~~~~~~~~~~ 44 (325)
T PRK05589 6 FWNDIKEAQEITSEEKYLKDKLDKYNHLRNRIEDIEVLC 44 (325)
T ss_pred hhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 378888877766655555555555555555555555444
No 139
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=36.29 E-value=1.5e+02 Score=22.13 Aligned_cols=39 Identities=23% Similarity=0.302 Sum_probs=30.5
Q ss_pred HhHHHHhHHhhHHHHHHHHHHHHHhhhhhhhhhhhh-hcC
Q 040215 15 NINKFSKLNNRFHELEDEIKFAKETNDNLEDAGNEL-ILT 53 (123)
Q Consensus 15 kIN~FsrLn~r~~~l~~~l~~~k~~le~L~Da~~El-L~d 53 (123)
+=|..+.+..+..-+...+......+...+++++-| +.|
T Consensus 4 k~~~i~~~Rl~~~~lk~~l~k~~~ql~~ke~lge~L~~iD 43 (177)
T PF13870_consen 4 KRNEISKLRLKNITLKHQLAKLEEQLRQKEELGEGLHLID 43 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHH
Confidence 345667777888888888888888888888888777 665
No 140
>PRK15335 type III secretion system protein SpaM; Provisional
Probab=36.28 E-value=1.9e+02 Score=22.04 Aligned_cols=43 Identities=21% Similarity=0.159 Sum_probs=36.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 040215 71 REEVEIRIEEMKEVNSKTLEKLEKEKETVLAQMNELKKILYGK 113 (123)
Q Consensus 71 ~~~a~e~LE~~~e~~~~ei~~le~~~~~i~~~m~eLK~~LYaK 113 (123)
+.-++.+++...-.+..+=..|..+.+.|..+.+-||..||+-
T Consensus 14 C~~~qsrC~~~l~q~~~~e~~ld~e~Eai~~q~agLk~LL~~~ 56 (147)
T PRK15335 14 CTVFHSQCESILLRYQDEDRGLQAEEEAILEQIAGLKLLLDTL 56 (147)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhHHHHHHHHh
Confidence 3446778888888888888899999999999999999999973
No 141
>KOG4010 consensus Coiled-coil protein TPD52 [General function prediction only]
Probab=35.99 E-value=1.3e+02 Score=24.27 Aligned_cols=33 Identities=15% Similarity=0.107 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040215 78 IEEMKEVNSKTLEKLEKEKETVLAQMNELKKIL 110 (123)
Q Consensus 78 LE~~~e~~~~ei~~le~~~~~i~~~m~eLK~~L 110 (123)
|-....+++.||..|..-+..-+....+||..|
T Consensus 49 lr~EL~kvEeEI~TLrqVLaAKerH~~ELKRKL 81 (208)
T KOG4010|consen 49 LRTELAKVEEEIVTLRQVLAAKERHAAELKRKL 81 (208)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 333344444444444444444445556777655
No 142
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=35.74 E-value=1.7e+02 Score=21.23 Aligned_cols=70 Identities=9% Similarity=0.178 Sum_probs=40.0
Q ss_pred hhHHHHHHHHHHHHHhhhhhhhhhhhhhcCCCccceeeecceeeecChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040215 24 NRFHELEDEIKFAKETNDNLEDAGNELILTDEDIVRFQIGEVFAHVPREEVEIRIEEMKEVNSKTLEKLEKEKETVLAQM 103 (123)
Q Consensus 24 ~r~~~l~~~l~~~k~~le~L~Da~~ElL~ddd~~i~ykiGe~Fv~~~~~~a~e~LE~~~e~~~~ei~~le~~~~~i~~~m 103 (123)
+...++...+..+...++..--.-.||...-|. ...+...|..........+..|+.++.++...+
T Consensus 9 as~~el~n~La~Le~slE~~K~S~~eL~kqkd~--------------L~~~l~~L~~q~~s~~qr~~eLqaki~ea~~~l 74 (107)
T PF09304_consen 9 ASQNELQNRLASLERSLEDEKTSQGELAKQKDQ--------------LRNALQSLQAQNASRNQRIAELQAKIDEARRNL 74 (107)
T ss_dssp -----HHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHhhHHHHHHhHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555666666555554444444222221 556667777777777777777777777777766
Q ss_pred HHHH
Q 040215 104 NELK 107 (123)
Q Consensus 104 ~eLK 107 (123)
..=|
T Consensus 75 e~eK 78 (107)
T PF09304_consen 75 EDEK 78 (107)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6543
No 143
>PF14193 DUF4315: Domain of unknown function (DUF4315)
Probab=35.68 E-value=1.1e+02 Score=20.95 Aligned_cols=26 Identities=19% Similarity=0.201 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040215 78 IEEMKEVNSKTLEKLEKEKETVLAQM 103 (123)
Q Consensus 78 LE~~~e~~~~ei~~le~~~~~i~~~m 103 (123)
+.+..++....|..++.++..+..+.
T Consensus 6 i~~eieK~k~Kiae~Q~rlK~Le~qk 31 (83)
T PF14193_consen 6 IRAEIEKTKEKIAELQARLKELEAQK 31 (83)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444433
No 144
>PF04728 LPP: Lipoprotein leucine-zipper; InterPro: IPR006817 This repeating sequence, NAKVDQLSNDV, is found in the enterobacterial outer membrane lipoprotein LPP. The outer membrane lipoprotein is the most abundant protein in an Escherichia coli cell. The messenger RNA for the lipoprotein of the E. coli outer membrane codes for a putative precursor, prolipoprotein, which has 20 additional amino acid residues extending from the amino terminus of the lipoprotein.; GO: 0019867 outer membrane; PDB: 1JCC_A 2GUV_C 2GUS_A 1JCD_A 1KFM_A 1T8Z_D 1KFN_A 1EQ7_A.
Probab=35.48 E-value=1.2e+02 Score=19.51 Aligned_cols=27 Identities=15% Similarity=0.249 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040215 84 VNSKTLEKLEKEKETVLAQMNELKKIL 110 (123)
Q Consensus 84 ~~~~ei~~le~~~~~i~~~m~eLK~~L 110 (123)
.|...|..|..+++.+...++.|+...
T Consensus 7 ~Ls~dVq~L~~kvdqLs~dv~~lr~~v 33 (56)
T PF04728_consen 7 QLSSDVQTLNSKVDQLSSDVNALRADV 33 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444444444444443
No 145
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins.
Probab=34.92 E-value=2e+02 Score=21.67 Aligned_cols=34 Identities=18% Similarity=0.337 Sum_probs=18.3
Q ss_pred HHHHhHHhhHHHHHHHHHHHHHhhhh-hhhhhhhh
Q 040215 17 NKFSKLNNRFHELEDEIKFAKETNDN-LEDAGNEL 50 (123)
Q Consensus 17 N~FsrLn~r~~~l~~~l~~~k~~le~-L~Da~~El 50 (123)
+.|+.+.+....|..++..++.++.. +..+..++
T Consensus 73 ~~~~~lr~~~e~L~~eie~l~~~L~~ei~~l~a~~ 107 (177)
T PF07798_consen 73 SEFAELRSENEKLQREIEKLRQELREEINKLRAEV 107 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566666666666666666655433 33344444
No 146
>PF14193 DUF4315: Domain of unknown function (DUF4315)
Probab=34.81 E-value=1.4e+02 Score=20.49 Aligned_cols=28 Identities=21% Similarity=0.242 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040215 82 KEVNSKTLEKLEKEKETVLAQMNELKKI 109 (123)
Q Consensus 82 ~e~~~~ei~~le~~~~~i~~~m~eLK~~ 109 (123)
.+++.++|++...++.+++.++.+|-.+
T Consensus 3 leKi~~eieK~k~Kiae~Q~rlK~Le~q 30 (83)
T PF14193_consen 3 LEKIRAEIEKTKEKIAELQARLKELEAQ 30 (83)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3578888888888888888888887654
No 147
>PF11315 Med30: Mediator complex subunit 30; InterPro: IPR021019 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. Med30 is a metazoan-specific subunit of Mediator [], having no homologues in yeasts.
Probab=34.24 E-value=2.1e+02 Score=21.79 Aligned_cols=95 Identities=11% Similarity=0.210 Sum_probs=40.4
Q ss_pred HhHHHHhHHhhHHHHHHHHHHHHHhhhhhhhhhhhh-hcCCCccceeeecceeeecChhHHHHHHHHHHHHHHHHHHHHH
Q 040215 15 NINKFSKLNNRFHELEDEIKFAKETNDNLEDAGNEL-ILTDEDIVRFQIGEVFAHVPREEVEIRIEEMKEVNSKTLEKLE 93 (123)
Q Consensus 15 kIN~FsrLn~r~~~l~~~l~~~k~~le~L~Da~~El-L~ddd~~i~ykiGe~Fv~~~~~~a~e~LE~~~e~~~~ei~~le 93 (123)
-.-+|+++...+..++.-.+.+.---+..++.+-.+ -.+=+..|||+ ++...........+......++-..-++.+.
T Consensus 43 aqdr~~kl~e~lr~i~~LFkkLRlIYekCne~~~~l~~~~iEsLIP~~-~~~~~k~e~~~~s~~~~~~~~er~el~e~v~ 121 (150)
T PF11315_consen 43 AQDRRNKLQEQLRTIKVLFKKLRLIYEKCNENCQGLEPTPIESLIPYK-EEPRNKEEERDSSEEYRQLLEERKELIEQVK 121 (150)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCHHHhcccc-CCccccccccccchhhHHHHHHHHHHHHHHH
Confidence 334556665555555555555533344444443334 22223368886 2223333221112122222222223333455
Q ss_pred HHHHHHHHHHHHHHHHH
Q 040215 94 KEKETVLAQMNELKKIL 110 (123)
Q Consensus 94 ~~~~~i~~~m~eLK~~L 110 (123)
.+-..++.-|..|+..+
T Consensus 122 ~KN~qLk~iid~lR~~i 138 (150)
T PF11315_consen 122 QKNQQLKEIIDQLRNII 138 (150)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 55555555555555443
No 148
>PF04568 IATP: Mitochondrial ATPase inhibitor, IATP; InterPro: IPR007648 ATP synthase inhibitor prevents the enzyme from switching to ATP hydrolysis during collapse of the electrochemical gradient, for example during oxygen deprivation [] ATP synthase inhibitor forms a one to one complex with the F1 ATPase, possibly by binding at the alpha-beta interface. It is thought to inhibit ATP synthesis by preventing the release of ATP []. The minimum inhibitory region for bovine inhibitor (P01096 from SWISSPROT) is from residues 39 to 72 []. The inhibitor has two oligomeric states, dimer (the active state) and tetramer. At low pH , the inhibitor forms a dimer via antiparallel coiled coil interactions between the C-terminal regions of two monomers. At high pH, the inhibitor forms tetramers and higher oligomers by coiled coil interactions involving the N terminus and inhibitory region, thus preventing the inhibitory activity []. ; GO: 0004857 enzyme inhibitor activity, 0045980 negative regulation of nucleotide metabolic process, 0005739 mitochondrion; PDB: 1GMJ_B 1OHH_H 1HF9_B 2V7Q_J.
Probab=34.04 E-value=1.4e+02 Score=21.28 Aligned_cols=26 Identities=19% Similarity=0.277 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040215 76 IRIEEMKEVNSKTLEKLEKEKETVLA 101 (123)
Q Consensus 76 e~LE~~~e~~~~ei~~le~~~~~i~~ 101 (123)
+.|++.++++..+++.-+.+++.++.
T Consensus 72 EqL~~Lk~kl~~e~~~~~k~i~~le~ 97 (100)
T PF04568_consen 72 EQLKKLKEKLKEEIEHHRKEIDELEK 97 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444443
No 149
>PF06386 GvpL_GvpF: Gas vesicle synthesis protein GvpL/GvpF; InterPro: IPR009430 Gas vesicles provide cells with buoyancy, enabling them to remain at the water surface. These organelles are generally synthesized by halophilic archaea and cyanobacteria, as well as some other prokaryotes. A cluster of 12-14 gvp genes (gvpMLKJIHGFEDACNO)is responsible for gas vesicle synthesis in Halobacterium sp. []. GvpF and GvpL are essential for gas vesicle formation and display sequence similarity to one another, both containing predicted coiled-coil domains that are often involved in self-oligomerisation; and are structural components of the vesicle [].; GO: 0031412 gas vesicle organization, 0031411 gas vesicle
Probab=33.96 E-value=27 Score=27.47 Aligned_cols=39 Identities=23% Similarity=0.389 Sum_probs=34.0
Q ss_pred CccceeeecceeeecChhHHHHHHHHHHHHHHHHHHHHHHH
Q 040215 55 EDIVRFQIGEVFAHVPREEVEIRIEEMKEVNSKTLEKLEKE 95 (123)
Q Consensus 55 d~~i~ykiGe~Fv~~~~~~a~e~LE~~~e~~~~ei~~le~~ 95 (123)
...+|+++|-+| -+.+.+.+.|......+.+.++.|..+
T Consensus 76 ~tvLP~rFGtv~--~~~~~l~~~L~~~~~~~~~~L~~l~g~ 114 (249)
T PF06386_consen 76 GTVLPMRFGTVF--SSEEELRELLAENYDEFRAALDRLEGK 114 (249)
T ss_pred CCeeeeeCcccc--CCHHHHHHHHHHhHHHHHHHHHHcCCc
Confidence 357999999999 778999999999999999999887654
No 150
>PF08657 DASH_Spc34: DASH complex subunit Spc34 ; InterPro: IPR013966 The DASH complex is a ~10 subunit microtubule-binding complex that is transferred to the kinetochore prior to mitosis []. In Saccharomyces cerevisiae (Baker's yeast) DASH forms both rings and spiral structures on microtubules in vitro [, ]. Components of the DASH complex, including Dam1, Duo1, Spc34, Dad1 and Ask1, are essential and connect the centromere to the plus end of spindle microtubules [].
Probab=33.73 E-value=1.6e+02 Score=24.07 Aligned_cols=24 Identities=17% Similarity=0.329 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 040215 75 EIRIEEMKEVNSKTLEKLEKEKET 98 (123)
Q Consensus 75 ~e~LE~~~e~~~~ei~~le~~~~~ 98 (123)
....++...+-+.+|.+|+.++..
T Consensus 234 ~~~~de~I~rEeeEIreLE~k~~~ 257 (259)
T PF08657_consen 234 SVDTDEDIRREEEEIRELERKKRE 257 (259)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHh
Confidence 445556666667777777777654
No 151
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=33.60 E-value=1.4e+02 Score=19.68 Aligned_cols=40 Identities=15% Similarity=0.213 Sum_probs=28.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040215 71 REEVEIRIEEMKEVNSKTLEKLEKEKETVLAQMNELKKIL 110 (123)
Q Consensus 71 ~~~a~e~LE~~~e~~~~ei~~le~~~~~i~~~m~eLK~~L 110 (123)
...+...|-.....++..+..+..+++.....+..|+..|
T Consensus 31 ~~~~IKKLr~~~~e~e~~~~~l~~~~~~~e~~~~~l~~~l 70 (74)
T PF12329_consen 31 LNNTIKKLRAKIKELEKQIKELKKKLEELEKELESLEERL 70 (74)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3455666777777777777777777777777777777655
No 152
>PF11221 Med21: Subunit 21 of Mediator complex; InterPro: IPR021384 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. Med21 has been known as Srb7 in yeasts, hSrb7 in humans and Trap 19 in Drosophila. The heterodimer of the two subunits Med7 and Med21 appears to act as a hinge between the middle and the tail regions of Mediator []. ; PDB: 1YKE_B 1YKH_B.
Probab=33.58 E-value=1.6e+02 Score=21.59 Aligned_cols=44 Identities=25% Similarity=0.299 Sum_probs=31.2
Q ss_pred cccccHHHHHHhHHHHhHHhhHHHHHHHHHHHHHhhhhhhhhhhhh
Q 040215 5 DTVVTWEDQQNINKFSKLNNRFHELEDEIKFAKETNDNLEDAGNEL 50 (123)
Q Consensus 5 dveVt~EDQqkIN~FsrLn~r~~~l~~~l~~~k~~le~L~Da~~El 50 (123)
.+++|.++|. .+..+|+........++...-++.+.|-.-..++
T Consensus 94 g~~~see~Q~--~~i~~L~~E~~~~~~el~~~v~e~e~ll~~v~~~ 137 (144)
T PF11221_consen 94 GIEVSEEEQL--KRIKELEEENEEAEEELQEAVKEAEELLKQVQEL 137 (144)
T ss_dssp TSSS-HHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3578888887 6788888888888888877777666655544444
No 153
>PF02994 Transposase_22: L1 transposable element; InterPro: IPR004244 Many human L1 elements are capable of retrotransposition. Some of these have been shown to exhibit reverse transcriptase (RT) activity [] although the function of many are, as yet, unknown. More information about these proteins can be found at Protein of the Month: Transposase [].; PDB: 2LDY_A 3SOO_A 2YKQ_A 2YKO_C 2YKP_B 2W7A_B 2JRB_A.
Probab=33.54 E-value=1.8e+02 Score=24.74 Aligned_cols=27 Identities=30% Similarity=0.559 Sum_probs=0.4
Q ss_pred HHHHhHHHHhHHhhHHHHHHHHHHHHH
Q 040215 12 DQQNINKFSKLNNRFHELEDEIKFAKE 38 (123)
Q Consensus 12 DQqkIN~FsrLn~r~~~l~~~l~~~k~ 38 (123)
.++.|..+..++.+..+++.+++.+++
T Consensus 93 ~ek~~k~l~el~~~~~elkkEie~IKk 119 (370)
T PF02994_consen 93 KEKSIKELNELKKRIKELKKEIENIKK 119 (370)
T ss_dssp -------------------------H-
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHhh
Confidence 344444565565555555555555443
No 154
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=33.03 E-value=2.4e+02 Score=22.13 Aligned_cols=23 Identities=22% Similarity=0.372 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 040215 84 VNSKTLEKLEKEKETVLAQMNEL 106 (123)
Q Consensus 84 ~~~~ei~~le~~~~~i~~~m~eL 106 (123)
.+...+..|+.++..+...|..|
T Consensus 138 ~~E~ki~eLE~el~~~~~~lk~l 160 (237)
T PF00261_consen 138 AAESKIKELEEELKSVGNNLKSL 160 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhchhHHHHHHHHHHHHHHHHHh
Confidence 55555555555555555554443
No 155
>PRK12765 flagellar capping protein; Provisional
Probab=32.77 E-value=87 Score=28.47 Aligned_cols=37 Identities=14% Similarity=0.256 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 040215 78 IEEMKEVNSKTLEKLEKEKETVLAQMNELKKILYGKF 114 (123)
Q Consensus 78 LE~~~e~~~~ei~~le~~~~~i~~~m~eLK~~LYaKF 114 (123)
|....+.+...+..|..+.+..+.+|..+...|+.+|
T Consensus 530 l~~~~~~l~~~~~~l~~~~~~~~~rl~~~~~r~~~qf 566 (595)
T PRK12765 530 LTKYDESLTNEIKSLTTSKESTQELIDTKYETMANKW 566 (595)
T ss_pred chhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556677888888888888888888888888888887
No 156
>PRK00846 hypothetical protein; Provisional
Probab=32.60 E-value=1.5e+02 Score=20.14 Aligned_cols=34 Identities=9% Similarity=0.053 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040215 74 VEIRIEEMKEVNSKTLEKLEKEKETVLAQMNELK 107 (123)
Q Consensus 74 a~e~LE~~~e~~~~ei~~le~~~~~i~~~m~eLK 107 (123)
+.+.|.......+..|+.|...+.-+..++.++.
T Consensus 28 tIe~LN~~v~~qq~~I~~L~~ql~~L~~rL~~~~ 61 (77)
T PRK00846 28 ALTELSEALADARLTGARNAELIRHLLEDLGKVR 61 (77)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3344444444445555555555555555554444
No 157
>PF04325 DUF465: Protein of unknown function (DUF465); InterPro: IPR007420 Family members are found in small bacterial proteins, and also in the heavy chains of eukaryotic myosin and kinesin, C-terminal of the motor domain. Members of this family may form coiled coil structures.; PDB: 1ZHC_A.
Probab=32.57 E-value=1.2e+02 Score=18.31 Aligned_cols=31 Identities=29% Similarity=0.321 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040215 78 IEEMKEVNSKTLEKLEKEKETVLAQMNELKK 108 (123)
Q Consensus 78 LE~~~e~~~~ei~~le~~~~~i~~~m~eLK~ 108 (123)
|...-..++.+|..++..-......+..||+
T Consensus 4 L~~~h~~Ld~~I~~~e~~~~~~d~~l~~LKk 34 (49)
T PF04325_consen 4 LFEEHHELDKEIHRLEKRPEPDDEELERLKK 34 (49)
T ss_dssp HHHHHHHHHHHHHHHHTT--S-HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCCCCCHHHHHHHHH
Confidence 4445556777777777665555556666665
No 158
>PF13600 DUF4140: N-terminal domain of unknown function (DUF4140)
Probab=32.36 E-value=1.6e+02 Score=19.91 Aligned_cols=29 Identities=21% Similarity=0.216 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040215 81 MKEVNSKTLEKLEKEKETVLAQMNELKKI 109 (123)
Q Consensus 81 ~~e~~~~ei~~le~~~~~i~~~m~eLK~~ 109 (123)
....+.+++..++.++..+..++.-++..
T Consensus 71 ~~~~l~~~l~~l~~~~~~~~~~~~~~~~~ 99 (104)
T PF13600_consen 71 ELKELEEELEALEDELAALQDEIQALEAQ 99 (104)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44456666666666666666666655554
No 159
>PF14560 Ubiquitin_2: Ubiquitin-like domain; PDB: 1WJN_A 2KJ6_A 2KJR_A 1V6E_A 1T0Y_A.
Probab=32.28 E-value=40 Score=22.24 Aligned_cols=17 Identities=24% Similarity=0.034 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHhcCCCC
Q 040215 102 QMNELKKILYGKFRDSI 118 (123)
Q Consensus 102 ~m~eLK~~LYaKFG~~I 118 (123)
.+.+||..||..||-..
T Consensus 25 Tv~eLK~kl~~~~Gi~~ 41 (87)
T PF14560_consen 25 TVSELKQKLEKLTGIPP 41 (87)
T ss_dssp BHHHHHHHHHHHHTS-T
T ss_pred CHHHHHHHHHHHhCCCc
Confidence 36899999999999654
No 160
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=32.01 E-value=1.9e+02 Score=22.36 Aligned_cols=30 Identities=23% Similarity=0.425 Sum_probs=17.3
Q ss_pred hHHhhH-HHHHHHHHHHHHhhhhhhhhhhhh
Q 040215 21 KLNNRF-HELEDEIKFAKETNDNLEDAGNEL 50 (123)
Q Consensus 21 rLn~r~-~~l~~~l~~~k~~le~L~Da~~El 50 (123)
|.|+-. ..++..|...|++-....-+...|
T Consensus 50 RWNs~VRkqY~~~i~~AKkqRk~~~~~~~~l 80 (161)
T TIGR02894 50 RWNAYVRKQYEEAIELAKKQRKELKREAGSL 80 (161)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhccccCcccC
Confidence 455544 357777777777665544333334
No 161
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=31.84 E-value=1.7e+02 Score=22.01 Aligned_cols=41 Identities=39% Similarity=0.354 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-------HH-HHHHHHHHhcCC
Q 040215 76 IRIEEMKEVNSKTLEKLEKEKETVLAQ-------MN-ELKKILYGKFRD 116 (123)
Q Consensus 76 e~LE~~~e~~~~ei~~le~~~~~i~~~-------m~-eLK~~LYaKFG~ 116 (123)
.+++....+...++++|+.++...+.. |. .=+...|.+.|+
T Consensus 3 ~w~~~~~~~~~~~~~~Le~elk~~~~n~~kesir~~~~~l~~~~~~~Gd 51 (177)
T PF10602_consen 3 EWIEETKAKNAEELEKLEAELKDAKSNLGKESIRMALEDLADHYCKIGD 51 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhhh
Confidence 456666666677777777766653322 21 235677888886
No 162
>PF03234 CDC37_N: Cdc37 N terminal kinase binding; InterPro: IPR013855 In Saccharomyces cerevisiae (Baker's yeast), cell division control protein Cdc37 is required for the productive formation of Cdc28-cyclin complexes. Cdc37 may be a kinase targeting subunit of Hsp90 [].
Probab=31.78 E-value=1.2e+02 Score=23.50 Aligned_cols=60 Identities=15% Similarity=0.185 Sum_probs=40.8
Q ss_pred hh-hcCCC--ccceeeecceeeecChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040215 49 EL-ILTDE--DIVRFQIGEVFAHVPREEVEIRIEEMKEVNSKTLEKLEKEKETVLAQMNELKKILYG 112 (123)
Q Consensus 49 El-L~ddd--~~i~ykiGe~Fv~~~~~~a~e~LE~~~e~~~~ei~~le~~~~~i~~~m~eLK~~LYa 112 (123)
-| |.||. +..|--=-.+||.+.+-...++-+ ....+++.|..+.......+.+++..|=+
T Consensus 9 ~iElSDDeDie~HPniD~~S~~rwk~~~~~e~~~----~~~~~~~~l~~~~~~~~~~~~~~~~~l~~ 71 (177)
T PF03234_consen 9 HIELSDDEDIEVHPNIDKRSLFRWKHQARHERRE----ERKQEIEELKYERKINEKLLKRIQKLLSA 71 (177)
T ss_pred cccccCccccccCCCCChHHHHhHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35 66764 356665567899888877766666 45566777777777777777777766543
No 163
>PRK04325 hypothetical protein; Provisional
Probab=31.70 E-value=1.6e+02 Score=19.53 Aligned_cols=29 Identities=17% Similarity=0.272 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040215 77 RIEEMKEVNSKTLEKLEKEKETVLAQMNE 105 (123)
Q Consensus 77 ~LE~~~e~~~~ei~~le~~~~~i~~~m~e 105 (123)
.|......-+..|+.|+..+.-+..++.+
T Consensus 27 ~LN~vv~~Qq~~I~~L~~ql~~L~~rl~~ 55 (74)
T PRK04325 27 GLNATVARQQQTLDLLQAQLRLLYQQMRD 55 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333334444444444444444444433
No 164
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=31.34 E-value=2.9e+02 Score=22.45 Aligned_cols=41 Identities=12% Similarity=0.161 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCC
Q 040215 79 EEMKEVNSKTLEKLEKEKETVLAQMNELKKILYGKFRDSIN 119 (123)
Q Consensus 79 E~~~e~~~~ei~~le~~~~~i~~~m~eLK~~LYaKFG~~IN 119 (123)
-.+-+....+..+||+++......+..|+..+=.-=.|||.
T Consensus 85 tsQRDRFR~Rn~ELE~elr~~~~~~~~L~~Ev~~L~~DN~k 125 (248)
T PF08172_consen 85 TSQRDRFRQRNAELEEELRKQQQTISSLRREVESLRADNVK 125 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35556778888899999999999999888876544344433
No 165
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=31.33 E-value=3.9e+02 Score=26.70 Aligned_cols=38 Identities=29% Similarity=0.399 Sum_probs=33.9
Q ss_pred HHHhHHHHhHHhhHHHHHHHHHHHHHhhhhhhhhhhhh
Q 040215 13 QQNINKFSKLNNRFHELEDEIKFAKETNDNLEDAGNEL 50 (123)
Q Consensus 13 QqkIN~FsrLn~r~~~l~~~l~~~k~~le~L~Da~~El 50 (123)
-.++|.|-+|-....+++.++...+..+..+.+....|
T Consensus 811 ek~~~e~e~l~lE~e~l~~e~~~~k~~l~~~~~~~~~l 848 (1174)
T KOG0933|consen 811 EKRENEYERLQLEHEELEKEISSLKQQLEQLEKQISSL 848 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35789999999999999999999999999999888777
No 166
>PRK11546 zraP zinc resistance protein; Provisional
Probab=31.24 E-value=2.3e+02 Score=21.39 Aligned_cols=37 Identities=16% Similarity=0.162 Sum_probs=27.9
Q ss_pred cccHHHHHHhHH-HHhHHhhHHHHHHHHHHHHHhhhhh
Q 040215 7 VVTWEDQQNINK-FSKLNNRFHELEDEIKFAKETNDNL 43 (123)
Q Consensus 7 eVt~EDQqkIN~-FsrLn~r~~~l~~~l~~~k~~le~L 43 (123)
.+|.|.|+.+.+ +-....+...|..+|-.++.++..|
T Consensus 43 ~LT~EQQa~~q~I~~~f~~~t~~LRqqL~aKr~ELnAL 80 (143)
T PRK11546 43 PLTTEQQAAWQKIHNDFYAQTSALRQQLVSKRYEYNAL 80 (143)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 589999998833 2344567788888888888888765
No 167
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=31.08 E-value=3.5e+02 Score=25.36 Aligned_cols=31 Identities=26% Similarity=0.262 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040215 77 RIEEMKEVNSKTLEKLEKEKETVLAQMNELK 107 (123)
Q Consensus 77 ~LE~~~e~~~~ei~~le~~~~~i~~~m~eLK 107 (123)
.++.....|..++..-...++.++.++..|+
T Consensus 478 ~~~~~I~~L~~~L~e~~~~ve~L~~~l~~l~ 508 (652)
T COG2433 478 ARDRRIERLEKELEEKKKRVEELERKLAELR 508 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444455555555555555555555555
No 168
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=31.03 E-value=1.5e+02 Score=24.61 Aligned_cols=30 Identities=17% Similarity=0.267 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040215 80 EMKEVNSKTLEKLEKEKETVLAQMNELKKI 109 (123)
Q Consensus 80 ~~~e~~~~ei~~le~~~~~i~~~m~eLK~~ 109 (123)
+...+++++|..++.++..+...+.+.+..
T Consensus 73 ~~i~~~~~eik~l~~eI~~~~~~I~~r~~~ 102 (265)
T COG3883 73 KEIDQSKAEIKKLQKEIAELKENIVERQEL 102 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455566666666666655555555433
No 169
>PRK15355 type III secretion system protein SsaI; Provisional
Probab=30.95 E-value=32 Score=23.86 Aligned_cols=14 Identities=36% Similarity=0.479 Sum_probs=11.4
Q ss_pred HHHHHhHHHHhHHh
Q 040215 11 EDQQNINKFSKLNN 24 (123)
Q Consensus 11 EDQqkIN~FsrLn~ 24 (123)
+-|++||+|+.|-.
T Consensus 18 ~~~eqia~F~qLm~ 31 (82)
T PRK15355 18 PSQEQINFFEQLLK 31 (82)
T ss_pred cCHHHHHHHHHHhc
Confidence 56899999998754
No 170
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=30.93 E-value=1.6e+02 Score=20.75 Aligned_cols=35 Identities=20% Similarity=0.350 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040215 74 VEIRIEEMKEVNSKTLEKLEKEKETVLAQMNELKK 108 (123)
Q Consensus 74 a~e~LE~~~e~~~~ei~~le~~~~~i~~~m~eLK~ 108 (123)
.-..+.+....++.++++++.+-..+..++..||.
T Consensus 28 ~~~~l~~q~~~~~~e~~~l~~~n~~L~~eI~~L~~ 62 (105)
T PRK00888 28 DYWRVNDQVAAQQQTNAKLKARNDQLFAEIDDLKG 62 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 45566777777888888888888888888888876
No 171
>PF10158 LOH1CR12: Tumour suppressor protein; InterPro: IPR018780 This entry represents a region of 130 amino acids that is the most conserved part of some hypothetical proteins involved in loss of heterozygosity, and thus, tumour suppression []. The exact function of these proteins is not known.
Probab=30.87 E-value=2.2e+02 Score=21.00 Aligned_cols=35 Identities=23% Similarity=0.385 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 040215 81 MKEVNSKTLEKLEKEKETVLAQMNELKKILYGKFRD 116 (123)
Q Consensus 81 ~~e~~~~ei~~le~~~~~i~~~m~eLK~~LYaKFG~ 116 (123)
.+..+.+.+.+.+..+..+-..|.+= ...|+||-.
T Consensus 50 ~Q~~L~~riKevd~~~~~l~~~~~er-qk~~~k~ae 84 (131)
T PF10158_consen 50 DQNALAKRIKEVDQEIAKLLQQMVER-QKRFAKFAE 84 (131)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHH
Confidence 33333444444444444444444432 356777643
No 172
>PRK00295 hypothetical protein; Provisional
Probab=30.75 E-value=1.6e+02 Score=19.22 Aligned_cols=23 Identities=13% Similarity=0.329 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 040215 83 EVNSKTLEKLEKEKETVLAQMNE 105 (123)
Q Consensus 83 e~~~~ei~~le~~~~~i~~~m~e 105 (123)
..-+..|+.|+..+..+..++.+
T Consensus 29 ~~Qq~~I~~L~~ql~~L~~rl~~ 51 (68)
T PRK00295 29 VEQQRVIERLQLQMAALIKRQEE 51 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444333333
No 173
>cd08637 DNA_pol_A_pol_I_C Polymerase I functions primarily to fill DNA gaps that arise during DNA repair, recombination and replication. Family A polymerase (polymerase I) functions primarily to fill DNA gaps that arise during DNA repair, recombination and replication. DNA-dependent DNA polymerases can be classified in six main groups based upon phylogenetic relationships with E. coli polymerase I (classA), E. coli polymerase II (class B), E.coli polymerase III (class C), euryarchaaeota polymerase II (class D), human polymerase beta (class x), E. coli UmuC/DinB and eukaryotic RAP 30/Xeroderma pigmentosum variant (class Y). Family A polymerase are found primarily in organisms related to prokaryotes and include prokaryotic DNA polymerase I (pol I) ,mitochondrial polymerase delta, and several bacteriphage polymerases including those from odd-numbered phage (T3, T5, and T7). Prokaryotic Pol Is have two functional domains located on the same polypeptide; a 5'-3' polymerase and 5'-3' exonuc
Probab=30.65 E-value=1e+02 Score=26.10 Aligned_cols=40 Identities=28% Similarity=0.385 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHhcC
Q 040215 76 IRIEEMKEVNSKTLEKLEKEKETVLAQM------NELKKILYGKFR 115 (123)
Q Consensus 76 e~LE~~~e~~~~ei~~le~~~~~i~~~m------~eLK~~LYaKFG 115 (123)
++|.+..+++.+++++++.++-.+-..- .++...||.++|
T Consensus 3 ~~l~~~~~~~~~~~~~l~~~~~~l~g~~fn~~S~~qv~~~L~~~lg 48 (377)
T cd08637 3 EYLEELSEELEKELAELEEEIYELAGEEFNINSPKQLGEVLFEKLG 48 (377)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHhCC
Confidence 4566666777777777777765543311 456677777766
No 174
>PF15205 PLAC9: Placenta-specific protein 9
Probab=30.57 E-value=1.8e+02 Score=19.80 Aligned_cols=36 Identities=33% Similarity=0.451 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040215 73 EVEIRIEEMKEVNSKTLEKLEKEKETVLAQMNELKK 108 (123)
Q Consensus 73 ~a~e~LE~~~e~~~~ei~~le~~~~~i~~~m~eLK~ 108 (123)
.++.+|.-.-+.+++-++.|+.++..+-..+.+|--
T Consensus 22 av~~RLdviEe~veKTVEhLeaEvk~LLg~leelaw 57 (74)
T PF15205_consen 22 AVHSRLDVIEETVEKTVEHLEAEVKGLLGLLEELAW 57 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 457788888888888888888888888877777653
No 175
>cd01106 HTH_TipAL-Mta Helix-Turn-Helix DNA binding domain of the transcription regulators TipAL, Mta, and SkgA. Helix-turn-helix (HTH) TipAL, Mta, and SkgA transcription regulators, and related proteins, N-terminal domain. TipAL regulates resistance to and activation by numerous cyclic thiopeptide antibiotics, such as thiostrepton. Mta is a global transcriptional regulator; the N-terminal DNA-binding domain of Mta interacts directly with the promoters of mta, bmr, blt, and ydfK, and induces transcription of these multidrug-efflux transport genes. SkgA has been shown to control stationary-phase expression of catalase-peroxidase in Caulobacter crescentus. These proteins are comprised of distinct domains that harbor an N-terminal active (DNA-binding) site and a regulatory (effector-binding) site. The conserved N-terminal domain of these transcription regulators contains winged HTH motifs that mediate DNA binding. These proteins share the N-terminal DNA binding domain with other transcrip
Probab=30.55 E-value=1.7e+02 Score=19.77 Aligned_cols=25 Identities=28% Similarity=0.323 Sum_probs=10.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH
Q 040215 72 EEVEIRIEEMKEVNSKTLEKLEKEK 96 (123)
Q Consensus 72 ~~a~e~LE~~~e~~~~ei~~le~~~ 96 (123)
+++...|......+..++..++..+
T Consensus 72 ~~~~~~l~~~~~~l~~~i~~l~~~~ 96 (103)
T cd01106 72 EDLLEALREQKELLEEKKERLDKLI 96 (103)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444333
No 176
>PTZ00464 SNF-7-like protein; Provisional
Probab=30.31 E-value=2.8e+02 Score=22.00 Aligned_cols=38 Identities=21% Similarity=0.240 Sum_probs=29.3
Q ss_pred cChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040215 69 VPREEVEIRIEEMKEVNSKTLEKLEKEKETVLAQMNEL 106 (123)
Q Consensus 69 ~~~~~a~e~LE~~~e~~~~ei~~le~~~~~i~~~m~eL 106 (123)
.+..++...|....+.+++++..++.++...+..+...
T Consensus 14 ~t~~d~~~~l~~r~~~l~kKi~~ld~E~~~ak~~~k~~ 51 (211)
T PTZ00464 14 PTLEDASKRIGGRSEVVDARINKIDAELMKLKEQIQRT 51 (211)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45677788888888888888888888877777666433
No 177
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=30.21 E-value=3.8e+02 Score=23.53 Aligned_cols=89 Identities=17% Similarity=0.280 Sum_probs=56.5
Q ss_pred HHHhHHHHhHHhhHHHHHHHHHHHHHhhhhhhhhhhhhhcCCCccceeeecceeeecCh-----hHHHHHHHHHHHHHHH
Q 040215 13 QQNINKFSKLNNRFHELEDEIKFAKETNDNLEDAGNELILTDEDIVRFQIGEVFAHVPR-----EEVEIRIEEMKEVNSK 87 (123)
Q Consensus 13 QqkIN~FsrLn~r~~~l~~~l~~~k~~le~L~Da~~ElL~ddd~~i~ykiGe~Fv~~~~-----~~a~e~LE~~~e~~~~ 87 (123)
|.||.+..--|.-+..+.+.++..+.+-+.|.--..-|+ .-.+...++|+.+.- +.+.-++.+....++.
T Consensus 74 q~kirk~~e~~eglr~i~es~~e~q~e~~qL~~qnqkL~-----nqL~~~~~vf~k~k~~~q~LE~li~~~~EEn~~lql 148 (401)
T PF06785_consen 74 QTKIRKITEKDEGLRKIRESVEERQQESEQLQSQNQKLK-----NQLFHVREVFMKTKGDIQHLEGLIRHLREENQCLQL 148 (401)
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHhHHHHH-----HHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHH
Confidence 556666666666666666666666666665554443332 134556667776653 4556666777777777
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 040215 88 TLEKLEKEKETVLAQMNEL 106 (123)
Q Consensus 88 ei~~le~~~~~i~~~m~eL 106 (123)
.++.+..++.+...+-..|
T Consensus 149 qL~~l~~e~~Ekeeesq~L 167 (401)
T PF06785_consen 149 QLDALQQECGEKEEESQTL 167 (401)
T ss_pred hHHHHHHHHhHhHHHHHHH
Confidence 7777777777766666666
No 178
>PRK14160 heat shock protein GrpE; Provisional
Probab=30.11 E-value=1.7e+02 Score=23.45 Aligned_cols=34 Identities=21% Similarity=0.142 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040215 76 IRIEEMKEVNSKTLEKLEKEKETVLAQMNELKKI 109 (123)
Q Consensus 76 e~LE~~~e~~~~ei~~le~~~~~i~~~m~eLK~~ 109 (123)
+.-+.....++.++..|+.++..++.++.+||-.
T Consensus 50 ~~~~~~~~~l~~e~~~l~~~l~~l~~e~~elkd~ 83 (211)
T PRK14160 50 ESNEVKIEELKDENNKLKEENKKLENELEALKDR 83 (211)
T ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344455555555555555555555555543
No 179
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=30.06 E-value=3.5e+02 Score=23.69 Aligned_cols=78 Identities=17% Similarity=0.356 Sum_probs=50.6
Q ss_pred hHHHHhHHhhHHHHHHHHHHHHHhhhhhhh-hhhhh-hcCC---CccceeeecceeeecChhHHHHHHHHHHHHHHHHHH
Q 040215 16 INKFSKLNNRFHELEDEIKFAKETNDNLED-AGNEL-ILTD---EDIVRFQIGEVFAHVPREEVEIRIEEMKEVNSKTLE 90 (123)
Q Consensus 16 IN~FsrLn~r~~~l~~~l~~~k~~le~L~D-a~~El-L~dd---d~~i~ykiGe~Fv~~~~~~a~e~LE~~~e~~~~ei~ 90 (123)
=..|+.+...+.++++....+...++.|.+ ...|+ +.-. ++ .|+ .+..++.+....+--+.||.
T Consensus 211 ~~~l~~~~~el~eik~~~~~L~~~~e~Lk~~~~~e~~~~~~~LqEE--r~R---------~erLEeqlNd~~elHq~Ei~ 279 (395)
T PF10267_consen 211 NLGLQKILEELREIKESQSRLEESIEKLKEQYQREYQFILEALQEE--RYR---------YERLEEQLNDLTELHQNEIY 279 (395)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--HHH---------HHHHHHHHHHHHHHHHHHHH
Confidence 345777777788888877777777777775 56566 3321 22 222 24556666666667777777
Q ss_pred HHHHHHHHHHHHHH
Q 040215 91 KLEKEKETVLAQMN 104 (123)
Q Consensus 91 ~le~~~~~i~~~m~ 104 (123)
.|..++..++++|.
T Consensus 280 ~LKqeLa~~EEK~~ 293 (395)
T PF10267_consen 280 NLKQELASMEEKMA 293 (395)
T ss_pred HHHHHHHhHHHHHH
Confidence 77777777766665
No 180
>PF08154 NLE: NLE (NUC135) domain; InterPro: IPR012972 This domain is located N-terminal to WD40 repeats(IPR001680 from INTERPRO). It is found in the microtubule-associated protein Q12024 from SWISSPROT [].
Probab=30.00 E-value=70 Score=20.43 Aligned_cols=33 Identities=27% Similarity=0.320 Sum_probs=22.0
Q ss_pred hhhhhhhhhhhcCCCccceee--ecceeeecChhH
Q 040215 41 DNLEDAGNELILTDEDIVRFQ--IGEVFAHVPREE 73 (123)
Q Consensus 41 e~L~Da~~ElL~ddd~~i~yk--iGe~Fv~~~~~~ 73 (123)
..|+.+.+.||.+.++++||- |+..|+.-+..+
T Consensus 29 ~~Ls~LvN~LL~~~~~~vpfdF~i~~~~lr~sL~~ 63 (65)
T PF08154_consen 29 KELSELVNQLLDDEEEPVPFDFLINGEELRTSLEE 63 (65)
T ss_pred HHHHHHHHHHhccCCCCCcEEEEECCEEeechHHH
Confidence 456677777773445567765 788888877654
No 181
>PRK09039 hypothetical protein; Validated
Probab=29.83 E-value=3.4e+02 Score=22.83 Aligned_cols=34 Identities=15% Similarity=0.073 Sum_probs=24.6
Q ss_pred HHHHhHHhhHHHHHHHHHHHHHhhhhhhhhhhhh
Q 040215 17 NKFSKLNNRFHELEDEIKFAKETNDNLEDAGNEL 50 (123)
Q Consensus 17 N~FsrLn~r~~~l~~~l~~~k~~le~L~Da~~El 50 (123)
..++..|.+..-|+.+|..++.++..|+.+-++.
T Consensus 130 ~~~se~~~~V~~L~~qI~aLr~Qla~le~~L~~a 163 (343)
T PRK09039 130 QVSARALAQVELLNQQIAALRRQLAALEAALDAS 163 (343)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567777888888888888888877766655444
No 182
>KOG4603 consensus TBP-1 interacting protein [Signal transduction mechanisms]
Probab=29.76 E-value=2.1e+02 Score=22.84 Aligned_cols=74 Identities=18% Similarity=0.216 Sum_probs=36.0
Q ss_pred HHHhhhhhhhhhhhh-hcCCCccceeeecceeeecChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040215 36 AKETNDNLEDAGNEL-ILTDEDIVRFQIGEVFAHVPREEVEIRIEEMKEVNSKTLEKLEKEKETVLAQMNELKKIL 110 (123)
Q Consensus 36 ~k~~le~L~Da~~El-L~ddd~~i~ykiGe~Fv~~~~~~a~e~LE~~~e~~~~ei~~le~~~~~i~~~m~eLK~~L 110 (123)
..+-|+.|.++.-=. =.=.-.+|-+-=-|-| .++.++-...|......+++.+..|...+...+.++.+|-+.|
T Consensus 42 vqk~Ld~La~~Gki~~K~YGKqKIY~a~QDqF-~~~~~eel~~ld~~i~~l~ek~q~l~~t~s~veaEik~L~s~L 116 (201)
T KOG4603|consen 42 VQKTLDQLAQQGKIKEKMYGKQKIYFADQDQF-DMVSDEELQVLDGKIVALTEKVQSLQQTCSYVEAEIKELSSAL 116 (201)
T ss_pred HHHHHHHHHHcCchhHHhccceeeEeecHHhh-cCCChHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 344555665554211 1111123333333434 3444444455566666666666666666666666655555443
No 183
>PF00804 Syntaxin: Syntaxin; InterPro: IPR006011 Syntaxins A and B are nervous system-specific proteins implicated in the docking of synaptic vesicles with the presynaptic plasma membrane. Syntaxins are a family of receptors for intracellular transport vesicles. Each target membrane may be identified by a specific member of the syntaxin family []. Members of the syntaxin family [, ] have a size ranging from 30 Kd to 40 Kd; a C-terminal extremity which is highly hydrophobic and anchors the protein on the cytoplasmic surface of cellular membranes; a central, well conserved region, which seems to be in a coiled-coil conformation. ; GO: 0016020 membrane; PDB: 1S94_B 1EZ3_A 3C98_B 1BR0_A 1FIO_A 2XHE_B.
Probab=29.75 E-value=1.6e+02 Score=18.96 Aligned_cols=70 Identities=13% Similarity=0.332 Sum_probs=50.0
Q ss_pred HHhHHhhHHHHHHHHHHHHHhhhhhhhhhhhhhcCCCccceeeecceeeecChhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040215 19 FSKLNNRFHELEDEIKFAKETNDNLEDAGNELILTDEDIVRFQIGEVFAHVPREEVEIRIEEMKEVNSKTLEKLEKEKET 98 (123)
Q Consensus 19 FsrLn~r~~~l~~~l~~~k~~le~L~Da~~ElL~ddd~~i~ykiGe~Fv~~~~~~a~e~LE~~~e~~~~ei~~le~~~~~ 98 (123)
++.......++...|...+..+..|...-..+|...+. + ......++.....+......+...+..
T Consensus 2 ~~~f~~~v~~i~~~i~~i~~~~~~l~~l~~~~l~~~~~-------d-------~~~~~el~~l~~~i~~~~~~~~~~lk~ 67 (103)
T PF00804_consen 2 MPEFFDEVQEIREDIDKIKEKLNELRKLHKKILSSPDQ-------D-------SELKRELDELTDEIKQLFQKIKKRLKQ 67 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSH-------H-------HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCc-------c-------hhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667788899999999999999999988888433211 1 566777777777777666666666666
Q ss_pred HHHH
Q 040215 99 VLAQ 102 (123)
Q Consensus 99 i~~~ 102 (123)
+...
T Consensus 68 l~~~ 71 (103)
T PF00804_consen 68 LSKD 71 (103)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6655
No 184
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=29.49 E-value=1.6e+02 Score=21.66 Aligned_cols=39 Identities=10% Similarity=0.197 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040215 73 EVEIRIEEMKEVNSKTLEKLEKEKETVLAQMNELKKILY 111 (123)
Q Consensus 73 ~a~e~LE~~~e~~~~ei~~le~~~~~i~~~m~eLK~~LY 111 (123)
++.+...+....+...++.+..+++.++..+..|-..|+
T Consensus 82 ei~~~i~~eV~~v~~dv~~i~~dv~~v~~~V~~Le~ki~ 120 (126)
T PF07889_consen 82 EISKQIKDEVTEVREDVSQIGDDVDSVQQMVEGLEGKID 120 (126)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444555555555555555555555555555554443
No 185
>COG5509 Uncharacterized small protein containing a coiled-coil domain [Function unknown]
Probab=29.35 E-value=1.2e+02 Score=20.10 Aligned_cols=12 Identities=25% Similarity=0.445 Sum_probs=5.1
Q ss_pred HHHHHHHHHHHH
Q 040215 84 VNSKTLEKLEKE 95 (123)
Q Consensus 84 ~~~~ei~~le~~ 95 (123)
-++.+|+.|+.+
T Consensus 36 lLq~EIeRlkAe 47 (65)
T COG5509 36 LLQAEIERLKAE 47 (65)
T ss_pred HHHHHHHHHHHH
Confidence 444444444433
No 186
>PF11471 Sugarporin_N: Maltoporin periplasmic N-terminal extension; InterPro: IPR021570 This N-terminal domain is found in members of the sugar porin family 1.B.3 from TC, They are related to LamB - the well characterised maltoporin of Escherichia coli for which the three-dimensional structures with and without its substrate have been obtained by X-ray diffraction. The protein consists of an 18 beta-stranded beta-barrel in contrast to proteins of the general bacterial porin family (GBP) and the Rhodobacter PorCa Porin (RPP) family which consist of 16 beta-stranded beta-barrels. Although maltoporin contains a wider beta-barrel than the porins of the GBP and RPP families (1.B.1 from TC and 1.B.7 from TC), it exhibits a narrower channel, showing only 5% of the ionic conductance of the latter porins.
Probab=29.30 E-value=1.6e+02 Score=18.92 Aligned_cols=30 Identities=20% Similarity=0.231 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040215 78 IEEMKEVNSKTLEKLEKEKETVLAQMNELK 107 (123)
Q Consensus 78 LE~~~e~~~~ei~~le~~~~~i~~~m~eLK 107 (123)
+|...+.+++++...+.+...-+.+....|
T Consensus 30 iEqRLa~LE~rL~~ae~ra~~ae~~~~~~k 59 (60)
T PF11471_consen 30 IEQRLAALEQRLQAAEQRAQAAEARAKQAK 59 (60)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 555555666666666666666666555443
No 187
>PF04799 Fzo_mitofusin: fzo-like conserved region; InterPro: IPR006884 This entry represents the heptad repeat domain which is conserved at the C terminus of Fzo/mitofusion family of GTPases. Fzo is a mediator of mitochondrial fusion during spermatogenesis []. This conserved region is also found in the human mitofusin protein []. This domain forms a dimeric antiparallel coiled coil structure, which has been proposed to act as a mitochodrial tether before vesicle fusion [].; GO: 0003924 GTPase activity, 0006184 GTP catabolic process, 0008053 mitochondrial fusion, 0005741 mitochondrial outer membrane, 0016021 integral to membrane; PDB: 1T3J_A.
Probab=29.26 E-value=2.5e+02 Score=21.86 Aligned_cols=68 Identities=19% Similarity=0.276 Sum_probs=24.9
Q ss_pred hhhhhhhhhh-hcCC----Cc--cceeeecceeeecChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 040215 41 DNLEDAGNEL-ILTD----ED--IVRFQIGEVFAHVPREEVEIRIEEMKEVNSKTLEKLEKEKETVLAQMNELKKILYGK 113 (123)
Q Consensus 41 e~L~Da~~El-L~dd----d~--~i~ykiGe~Fv~~~~~~a~e~LE~~~e~~~~ei~~le~~~~~i~~~m~eLK~~LYaK 113 (123)
++.+-|+.-| +.-+ +. .|.--+-.+|-.+ ....+.-...++.+|+.|+.++..++.-...+| .|=.|
T Consensus 79 Qfv~hAt~KLr~iv~~tsancs~QVqqeL~~tf~rL-----~~~Vd~~~~eL~~eI~~L~~~i~~le~~~~~~k-~LrnK 152 (171)
T PF04799_consen 79 QFVDHATEKLRLIVSFTSANCSHQVQQELSSTFARL-----CQQVDQTKNELEDEIKQLEKEIQRLEEIQSKSK-TLRNK 152 (171)
T ss_dssp -------------------------------HHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHH
Confidence 5566677777 5432 11 2333333333322 233344555666777777777777766666666 34444
Q ss_pred c
Q 040215 114 F 114 (123)
Q Consensus 114 F 114 (123)
+
T Consensus 153 a 153 (171)
T PF04799_consen 153 A 153 (171)
T ss_dssp H
T ss_pred H
Confidence 4
No 188
>KOG3313 consensus Molecular chaperone Prefoldin, subunit 3 [Posttranslational modification, protein turnover, chaperones]
Probab=29.17 E-value=1.5e+02 Score=23.59 Aligned_cols=47 Identities=23% Similarity=0.278 Sum_probs=39.4
Q ss_pred cceeeec-ceeeecChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040215 57 IVRFQIG-EVFAHVPREEVEIRIEEMKEVNSKTLEKLEKEKETVLAQM 103 (123)
Q Consensus 57 ~i~ykiG-e~Fv~~~~~~a~e~LE~~~e~~~~ei~~le~~~~~i~~~m 103 (123)
+|.+-+| .+.+..+.++|++.|.+....+.+.+..++..++=++.+.
T Consensus 111 kV~LWLGAnVMlEY~leEAeaLLkknl~sa~k~l~~~~~DldfLrdQv 158 (187)
T KOG3313|consen 111 KVYLWLGANVMLEYDLEEAEALLKKNLTSAVKSLDVLEEDLDFLRDQV 158 (187)
T ss_pred eEEEEecceeEEEecHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhc
Confidence 4666666 4678899999999999999999999999999888777654
No 189
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=28.73 E-value=2.7e+02 Score=21.42 Aligned_cols=29 Identities=34% Similarity=0.462 Sum_probs=14.5
Q ss_pred HHHhHHHHhHHhhHHHHHHHHHHHHHhhh
Q 040215 13 QQNINKFSKLNNRFHELEDEIKFAKETND 41 (123)
Q Consensus 13 QqkIN~FsrLn~r~~~l~~~l~~~k~~le 41 (123)
+++-++..+|......++..+..++..++
T Consensus 65 ~~~~~~~~~l~~~~~~~~~~i~~l~~~i~ 93 (188)
T PF03962_consen 65 QKRQNKLEKLQKEIEELEKKIEELEEKIE 93 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445555555555555555554444443
No 190
>PF11598 COMP: Cartilage oligomeric matrix protein; InterPro: IPR024665 Thrombospondins are adhesive glycoproteins that mediate cell-to-cell and cell-to-matrix interactions. Cartilage oligomeric matrix protein may play a role in the structural integrity of cartilage via its interaction with other extracellular matrix proteins such as collagen and fibronectin [, ]. Thrombospondin 3 and 4 and cartilage oligomeric matrix proteins contain a five-stranded coiled-coil domain represented by this entry. This domain has a binding site between two internal rings formed by Leu37 and Thr40 [].; PDB: 1MZ9_D 1FBM_A 1VDF_E.
Probab=28.53 E-value=1.5e+02 Score=18.26 Aligned_cols=39 Identities=26% Similarity=0.313 Sum_probs=33.4
Q ss_pred HHHHhHHHHhHHhhHHHHHHHHHHHHHhhhhhhhhhhhh
Q 040215 12 DQQNINKFSKLNNRFHELEDEIKFAKETNDNLEDAGNEL 50 (123)
Q Consensus 12 DQqkIN~FsrLn~r~~~l~~~l~~~k~~le~L~Da~~El 50 (123)
+.+.|..++-+|+-+.++++.++..-++...|...-.|.
T Consensus 3 ~~~l~~ql~~l~~~l~elk~~l~~Q~kE~~~LRntI~eC 41 (45)
T PF11598_consen 3 DSQLIKQLSELNQMLQELKELLRQQIKETRFLRNTIMEC 41 (45)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 356788899999999999999999999999998887776
No 191
>PF08286 Spc24: Spc24 subunit of Ndc80; InterPro: IPR013252 Spc24 is a component of the evolutionarily conserved kinetochore-associated Ndc80 complex and is involved in chromosome segregation [].; PDB: 2VE7_D 2FV4_B 2FTX_B.
Probab=28.04 E-value=20 Score=25.50 Aligned_cols=33 Identities=33% Similarity=0.424 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040215 78 IEEMKEVNSKTLEKLEKEKETVLAQMNELKKIL 110 (123)
Q Consensus 78 LE~~~e~~~~ei~~le~~~~~i~~~m~eLK~~L 110 (123)
|+..+-.+-+++..|+.++..+..++.+||..|
T Consensus 4 Ld~~k~~laK~~~~LE~~l~~l~~el~~L~~~l 36 (118)
T PF08286_consen 4 LDNEKFRLAKELSDLESELESLQSELEELKEEL 36 (118)
T ss_dssp ---------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444455555555555555555555555443
No 192
>PF05103 DivIVA: DivIVA protein; InterPro: IPR007793 The Bacillus subtilis divIVA1 mutation causes misplacement of the septum during cell division, resulting in the formation of small, circular, anucleate minicells []. Inactivation of divIVA produces a minicell phenotype, whereas overproduction of DivIVA results in a filamentation phenotype []. These proteins appear to contain coiled-coils.; PDB: 2WUK_C 2WUJ_A.
Probab=28.03 E-value=57 Score=22.69 Aligned_cols=41 Identities=20% Similarity=0.336 Sum_probs=20.0
Q ss_pred cceeeecChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040215 63 GEVFAHVPREEVEIRIEEMKEVNSKTLEKLEKEKETVLAQMNELK 107 (123)
Q Consensus 63 Ge~Fv~~~~~~a~e~LE~~~e~~~~ei~~le~~~~~i~~~m~eLK 107 (123)
+-+|.=.+.+++-..|+ .+..++..|..+...+..++..|.
T Consensus 12 ~~~~rGYd~~eVD~fl~----~l~~~~~~l~~e~~~L~~~~~~l~ 52 (131)
T PF05103_consen 12 KKSMRGYDPDEVDDFLD----ELAEELERLQRENAELKEEIEELQ 52 (131)
T ss_dssp -EEEEEEEHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHCCC
T ss_pred CCCCCCcCHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455667777766665 333344444444444444444333
No 193
>TIGR01062 parC_Gneg DNA topoisomerase IV, A subunit, proteobacterial. Operationally, topoisomerase IV is a type II topoisomerase required for the decatenation of chromosome segregation. Not every bacterium has both a topo II and a topo IV. The topo IV families of the Gram-positive bacteria and the Gram-negative bacteria appear not to represent a single clade among the type II topoisomerases, and are represented by separate models for this reason.
Probab=27.98 E-value=4.5e+02 Score=24.80 Aligned_cols=42 Identities=12% Similarity=0.027 Sum_probs=23.7
Q ss_pred eecChhHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHH
Q 040215 67 AHVPREEVEIRIEEMKEVNSK-TLEKLEKEKETVLAQMNELKK 108 (123)
Q Consensus 67 v~~~~~~a~e~LE~~~e~~~~-ei~~le~~~~~i~~~m~eLK~ 108 (123)
|.++..+|+--|+=..-.+.. +..++..+.+++..+.++|+.
T Consensus 403 f~ls~~QaeaIL~mrL~~L~~le~~~i~~E~~~l~~e~~~l~~ 445 (735)
T TIGR01062 403 FKLSAIQAEAILNLRLRHLAKLEEHAIIDEQSELEKERAILEK 445 (735)
T ss_pred cCCCHHHHHHHHHhHHHHhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 568888888776655544432 444444444444444444443
No 194
>COG0497 RecN ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=27.87 E-value=1.1e+02 Score=27.89 Aligned_cols=46 Identities=33% Similarity=0.304 Sum_probs=33.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHhcCCCC
Q 040215 72 EEVEIRIEEMKEVNSKTLEKLEK---EKETVLAQMNELKKILYGKFRDSI 118 (123)
Q Consensus 72 ~~a~e~LE~~~e~~~~ei~~le~---~~~~i~~~m~eLK~~LYaKFG~~I 118 (123)
++|...|+....++..-++.++- +++.+..+|..|+ .|=-|||..|
T Consensus 272 ~ea~~~l~ea~~el~~~~~~le~Dp~~L~~ve~Rl~~L~-~l~RKY~~~~ 320 (557)
T COG0497 272 EEALYELEEASEELRAYLDELEFDPNRLEEVEERLFALK-SLARKYGVTI 320 (557)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHH-HHHHHhCCCH
Confidence 44555666666666666666654 5889999999998 7888898876
No 195
>PF10158 LOH1CR12: Tumour suppressor protein; InterPro: IPR018780 This entry represents a region of 130 amino acids that is the most conserved part of some hypothetical proteins involved in loss of heterozygosity, and thus, tumour suppression []. The exact function of these proteins is not known.
Probab=27.77 E-value=2.1e+02 Score=21.09 Aligned_cols=53 Identities=21% Similarity=0.310 Sum_probs=40.4
Q ss_pred cHHHHHHhHHHHhHHhhHHHHHHHHHHHHHhhhhhhhhhhhh--hcCCCc-cceee
Q 040215 9 TWEDQQNINKFSKLNNRFHELEDEIKFAKETNDNLEDAGNEL--ILTDED-IVRFQ 61 (123)
Q Consensus 9 t~EDQqkIN~FsrLn~r~~~l~~~l~~~k~~le~L~Da~~El--L~ddd~-~i~yk 61 (123)
..+=|+++.+|+---++.+++...|.....-+..+-...+-| ++.+++ ..|+.
T Consensus 72 ~~erqk~~~k~ae~L~kv~els~~L~~~~~lL~~~v~~ie~LN~~LP~~~RLep~~ 127 (131)
T PF10158_consen 72 MVERQKRFAKFAEQLEKVNELSQQLSRCQSLLNQTVPSIETLNEILPEEERLEPFV 127 (131)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCChhhcCCCCC
Confidence 346688999999999999999999999888888887777777 444444 34443
No 196
>PF15372 DUF4600: Domain of unknown function (DUF4600)
Probab=27.71 E-value=2.4e+02 Score=21.01 Aligned_cols=80 Identities=16% Similarity=0.237 Sum_probs=43.3
Q ss_pred CCccccccHHHHHHhHHHHhHHhhHHHHHHHHHHHHHhhhhhhhhhhhhhcCCCccceeeecceeeecChhHHHHHHHHH
Q 040215 2 EKSDTVVTWEDQQNINKFSKLNNRFHELEDEIKFAKETNDNLEDAGNELILTDEDIVRFQIGEVFAHVPREEVEIRIEEM 81 (123)
Q Consensus 2 ~~~dveVt~EDQqkIN~FsrLn~r~~~l~~~l~~~k~~le~L~Da~~ElL~ddd~~i~ykiGe~Fv~~~~~~a~e~LE~~ 81 (123)
++++--+.+|-|.-+|. .|+.++..+++.++.+.--+.+.+ .+++.|+ .||.+.. ...
T Consensus 2 e~nEWktRYEtQ~E~N~---------QLekqi~~l~~kiek~r~n~~drl------~siR~ye---~Ms~~~l----~~l 59 (129)
T PF15372_consen 2 EGNEWKTRYETQLELND---------QLEKQIIILREKIEKIRGNPSDRL------SSIRRYE---QMSVESL----NQL 59 (129)
T ss_pred cchhHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHhCCCcccc------HHHHHHh---hccHHHH----HHH
Confidence 45566677888888774 466677777766666554443332 3555544 4454433 222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 040215 82 KEVNSKTLEKLEKEKETVLAQM 103 (123)
Q Consensus 82 ~e~~~~ei~~le~~~~~i~~~m 103 (123)
...++++-..|++.+.++.+++
T Consensus 60 lkqLEkeK~~Le~qlk~~e~rL 81 (129)
T PF15372_consen 60 LKQLEKEKRSLENQLKDYEWRL 81 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444445554444444
No 197
>COG4717 Uncharacterized conserved protein [Function unknown]
Probab=27.60 E-value=54 Score=31.78 Aligned_cols=29 Identities=17% Similarity=0.389 Sum_probs=24.9
Q ss_pred CccceeeecceeeecChhHHHHHHHHHHH
Q 040215 55 EDIVRFQIGEVFAHVPREEVEIRIEEMKE 83 (123)
Q Consensus 55 d~~i~ykiGe~Fv~~~~~~a~e~LE~~~e 83 (123)
+.|.|+-+.|+|||++...+..+|+-..+
T Consensus 925 ~~~LP~i~DD~fVhFD~~R~~r~~e~l~d 953 (984)
T COG4717 925 REPLPFIADDIFVHFDDERAKRMLELLAD 953 (984)
T ss_pred CCCCCeeeccchhccCHHHHHHHHHHHHH
Confidence 55899999999999999999998885543
No 198
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=27.56 E-value=2.5e+02 Score=23.35 Aligned_cols=7 Identities=29% Similarity=0.563 Sum_probs=3.5
Q ss_pred hhhhhhh
Q 040215 44 EDAGNEL 50 (123)
Q Consensus 44 ~Da~~El 50 (123)
-++..+|
T Consensus 48 ~~~q~ei 54 (265)
T COG3883 48 KNIQNEI 54 (265)
T ss_pred HHHHHHH
Confidence 3445555
No 199
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=27.47 E-value=5.1e+02 Score=24.17 Aligned_cols=73 Identities=25% Similarity=0.269 Sum_probs=0.0
Q ss_pred HHHHhHHhhHHHHHHHHHHHHHhhhhhhhhhhhhhcCCCccceeeecceeeecChhHHHHHHHHHHHHHHHHHHHHHHHH
Q 040215 17 NKFSKLNNRFHELEDEIKFAKETNDNLEDAGNELILTDEDIVRFQIGEVFAHVPREEVEIRIEEMKEVNSKTLEKLEKEK 96 (123)
Q Consensus 17 N~FsrLn~r~~~l~~~l~~~k~~le~L~Da~~ElL~ddd~~i~ykiGe~Fv~~~~~~a~e~LE~~~e~~~~ei~~le~~~ 96 (123)
++...+..++..++.++..+..++..+.....++ ..-...++.....++..+..++.++
T Consensus 819 ~~~~~l~~~~~~l~~e~~~l~~~~~~l~~~~~~~---------------------~~~~~~l~~~~~~~~~~~~~~~~~~ 877 (1164)
T TIGR02169 819 QKLNRLTLEKEYLEKEIQELQEQRIDLKEQIKSI---------------------EKEIENLNGKKEELEEELEELEAAL 877 (1164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHH
Q 040215 97 ETVLAQMNELKKIL 110 (123)
Q Consensus 97 ~~i~~~m~eLK~~L 110 (123)
..+..++.++...+
T Consensus 878 ~~l~~~l~~l~~~~ 891 (1164)
T TIGR02169 878 RDLESRLGDLKKER 891 (1164)
T ss_pred HHHHHHHHHHHHHH
No 200
>PF04420 CHD5: CHD5-like protein; InterPro: IPR007514 Members of this family are probably coiled-coil proteins that are similar to the CHD5 (Congenital heart disease 5) protein. The exact molecular function of these eukaryotic proteins is unknown.; PDB: 3SJA_H 3SJC_D 3SJB_D 3ZS8_D 3VLC_E.
Probab=27.46 E-value=72 Score=23.94 Aligned_cols=30 Identities=27% Similarity=0.512 Sum_probs=23.5
Q ss_pred HHHhHHHHhHHhhHHHHHHHHHHHHHhhhh
Q 040215 13 QQNINKFSKLNNRFHELEDEIKFAKETNDN 42 (123)
Q Consensus 13 QqkIN~FsrLn~r~~~l~~~l~~~k~~le~ 42 (123)
|.-.-+++|||.+++.++++++.+++....
T Consensus 62 qDeFAkwaKl~Rk~~kl~~el~~~~~~~~~ 91 (161)
T PF04420_consen 62 QDEFAKWAKLNRKLDKLEEELEKLNKSLSS 91 (161)
T ss_dssp TTSHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334567889999999999999988776544
No 201
>PF13863 DUF4200: Domain of unknown function (DUF4200)
Probab=27.45 E-value=2.1e+02 Score=19.73 Aligned_cols=23 Identities=22% Similarity=0.433 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 040215 85 NSKTLEKLEKEKETVLAQMNELK 107 (123)
Q Consensus 85 ~~~ei~~le~~~~~i~~~m~eLK 107 (123)
...+|..|..+++.+......+.
T Consensus 79 k~~ei~~l~~~l~~l~~~~~k~e 101 (126)
T PF13863_consen 79 KEAEIKKLKAELEELKSEISKLE 101 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444443
No 202
>PRK13922 rod shape-determining protein MreC; Provisional
Probab=27.07 E-value=2e+02 Score=22.85 Aligned_cols=38 Identities=26% Similarity=0.277 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHh
Q 040215 76 IRIEEMKEVNSKTLEKLEKEKE---TVLAQMNELKKILYGK 113 (123)
Q Consensus 76 e~LE~~~e~~~~ei~~le~~~~---~i~~~m~eLK~~LYaK 113 (123)
..+.+..+.+++++..|+.+.. .+..+...||..|--+
T Consensus 72 ~~l~~en~~L~~e~~~l~~~~~~~~~l~~en~~L~~lL~~~ 112 (276)
T PRK13922 72 FDLREENEELKKELLELESRLQELEQLEAENARLRELLNLK 112 (276)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc
Confidence 3555666677777777777666 6677888888776443
No 203
>KOG4253 consensus Tryptophan-rich basic nuclear protein [General function prediction only]
Probab=26.97 E-value=1e+02 Score=24.09 Aligned_cols=28 Identities=25% Similarity=0.526 Sum_probs=23.0
Q ss_pred HHHHhHHHHhHHhhHHHHHHHHHHHHHh
Q 040215 12 DQQNINKFSKLNNRFHELEDEIKFAKET 39 (123)
Q Consensus 12 DQqkIN~FsrLn~r~~~l~~~l~~~k~~ 39 (123)
-|.+.-+.+|||.+++.+..+++...+-
T Consensus 65 ~qD~fAkwaRlnRKi~kl~~ele~qs~n 92 (175)
T KOG4253|consen 65 MQDNFAKWARLNRKINKLDKELETQSKN 92 (175)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4778889999999999999999665443
No 204
>cd01789 Alp11_N Ubiquitin-like domain of Alp11 tubulin-folding cofactor B. Alp11, also known as tubulin-folding cofactor B, is one of at least three proteins required for the proper folding of tubulins prior to their incorporation into microtubules. These cofactors are necessary for the biogenesis of microtubules and for cell viability. Alp11 has three domains including an N-terminal ubiquitin-like domain (represented by this CD) which executes the essential function, a central coiled-coil domain necessary for maintenance of cellular alpha-tubulin levels, and a C-terminal CLIP-170 domain is required for efficient binding to alpha-tubulin.
Probab=26.87 E-value=49 Score=22.02 Aligned_cols=16 Identities=31% Similarity=0.185 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHhcCCC
Q 040215 102 QMNELKKILYGKFRDS 117 (123)
Q Consensus 102 ~m~eLK~~LYaKFG~~ 117 (123)
-..+||..||..||-.
T Consensus 24 Tv~~lK~kl~~~~G~~ 39 (84)
T cd01789 24 TIAELKKKLELVVGTP 39 (84)
T ss_pred cHHHHHHHHHHHHCCC
Confidence 4678999999999964
No 205
>PF10046 BLOC1_2: Biogenesis of lysosome-related organelles complex-1 subunit 2 ; InterPro: IPR019269 This entry represents a family of proteins that play a role in cellular proliferation, as well as in the biogenesis of specialised organelles of the endosomal-lysosomal system [].
Probab=26.74 E-value=2.2e+02 Score=19.59 Aligned_cols=39 Identities=15% Similarity=0.307 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 040215 76 IRIEEMKEVNSKTLEKLEKEKETVLAQMNELKKILYGKFR 115 (123)
Q Consensus 76 e~LE~~~e~~~~ei~~le~~~~~i~~~m~eLK~~LYaKFG 115 (123)
..|++.......+..++......+...+..|+. .|+.|.
T Consensus 24 ~LLe~mN~~~~~kY~~~~~~~~~l~~~~~~l~~-k~~~l~ 62 (99)
T PF10046_consen 24 NLLENMNKATSLKYKKMKDIAAGLEKNLEDLNQ-KYEELQ 62 (99)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHH
Confidence 345666666666666666666666666666663 555553
No 206
>PRK02119 hypothetical protein; Provisional
Probab=26.72 E-value=1.9e+02 Score=19.05 Aligned_cols=20 Identities=5% Similarity=0.242 Sum_probs=7.9
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 040215 86 SKTLEKLEKEKETVLAQMNE 105 (123)
Q Consensus 86 ~~ei~~le~~~~~i~~~m~e 105 (123)
+..|+.|...+.-+..++.+
T Consensus 36 q~~id~L~~ql~~L~~rl~~ 55 (73)
T PRK02119 36 QFVIDKMQVQLRYMANKLKD 55 (73)
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 33344444444433333333
No 207
>PF10359 Fmp27_WPPW: RNA pol II promoter Fmp27 protein domain; InterPro: IPR019449 The function of the FMP27 protein is not known. FMP27 is the product of a nuclear encoded gene but it is detected in highly purified mitochondria in high-throughput studies []. This entry represents a domain within FMP27 that contains characteristic HQR and WPPW sequence motifs.
Probab=26.68 E-value=3.8e+02 Score=23.49 Aligned_cols=37 Identities=11% Similarity=0.126 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 040215 77 RIEEMKEVNSKTLEKLEKEKETVLAQMNELKKILYGK 113 (123)
Q Consensus 77 ~LE~~~e~~~~ei~~le~~~~~i~~~m~eLK~~LYaK 113 (123)
.+....+.+...+..|..++.-++..+..|+......
T Consensus 197 ~~~~~~~~l~~~~~~l~~~~~~l~~~l~~l~~~~~~~ 233 (475)
T PF10359_consen 197 ELKSDIEELERHISSLKERIEFLENMLEDLEDSESSS 233 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccc
Confidence 3446666788888888888888888888888766543
No 208
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]
Probab=26.68 E-value=2.6e+02 Score=22.40 Aligned_cols=29 Identities=21% Similarity=0.353 Sum_probs=16.6
Q ss_pred HHhHHhhHHHHHHHHHHHHHhhhhhhhhh
Q 040215 19 FSKLNNRFHELEDEIKFAKETNDNLEDAG 47 (123)
Q Consensus 19 FsrLn~r~~~l~~~l~~~k~~le~L~Da~ 47 (123)
-+.+..+...++.++.......+.++.=+
T Consensus 47 ~A~~~a~~k~~e~~~~~~~~~~~k~e~~A 75 (225)
T COG1842 47 LAQAIARQKQLERKLEEAQARAEKLEEKA 75 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555666666666666666655544
No 209
>PF05190 MutS_IV: MutS family domain IV C-terminus.; InterPro: IPR007861 Mismatch repair contributes to the overall fidelity of DNA replication and is essential for combating the adverse effects of damage to the genome. It involves the correction of mismatched base pairs that have been missed by the proofreading element of the DNA polymerase complex. The post-replicative Mismatch Repair System (MMRS) of Escherichia coli involves MutS (Mutator S), MutL and MutH proteins, and acts to correct point mutations or small insertion/deletion loops produced during DNA replication []. MutS and MutL are involved in preventing recombination between partially homologous DNA sequences. The assembly of MMRS is initiated by MutS, which recognises and binds to mispaired nucleotides and allows further action of MutL and MutH to eliminate a portion of newly synthesized DNA strand containing the mispaired base []. MutS can also collaborate with methyltransferases in the repair of O(6)-methylguanine damage, which would otherwise pair with thymine during replication to create an O(6)mG:T mismatch []. MutS exists as a dimer, where the two monomers have different conformations and form a heterodimer at the structural level []. Only one monomer recognises the mismatch specifically and has ADP bound. Non-specific major groove DNA-binding domains from both monomers embrace the DNA in a clamp-like structure. Mismatch binding induces ATP uptake and a conformational change in the MutS protein, resulting in a clamp that translocates on DNA. MutS is a modular protein with a complex structure [], and is composed of: N-terminal mismatch-recognition domain, which is similar in structure to tRNA endonuclease. Connector domain, which is similar in structure to Holliday junction resolvase ruvC. Core domain, which is composed of two separate subdomains that join together to form a helical bundle; from within the core domain, two helices act as levers that extend towards (but do not touch) the DNA. Clamp domain, which is inserted between the two subdomains of the core domain at the top of the lever helices; the clamp domain has a beta-sheet structure. ATPase domain (connected to the core domain), which has a classical Walker A motif. HTH (helix-turn-helix) domain, which is involved in dimer contacts. The MutS family of proteins is named after the Salmonella typhimurium MutS protein involved in mismatch repair. Homologues of MutS have been found in many species including eukaryotes (MSH 1, 2, 3, 4, 5, and 6 proteins), archaea and bacteria, and together these proteins have been grouped into the MutS family. Although many of these proteins have similar activities to the E. coli MutS, there is significant diversity of function among the MutS family members. Human MSH has been implicated in non-polyposis colorectal carcinoma (HNPCC) and is a mismatch binding protein [].This diversity is even seen within species, where many species encode multiple MutS homologues with distinct functions []. Inter-species homologues may have arisen through frequent ancient horizontal gene transfer of MutS (and MutL) from bacteria to archaea and eukaryotes via endosymbiotic ancestors of mitochondria and chloroplasts []. This entry represents the clamp domain (domain 4) found in proteins of the MutS family. The clamp domain is inserted within the core domain at the top of the lever helices. It has a beta-sheet structure [].; GO: 0005524 ATP binding, 0030983 mismatched DNA binding, 0006298 mismatch repair; PDB: 2WTU_A 1OH7_A 1OH5_B 1W7A_B 1NG9_A 1OH8_B 1WBD_A 1WB9_A 3K0S_A 1OH6_A ....
Probab=26.48 E-value=1.8e+02 Score=18.51 Aligned_cols=34 Identities=26% Similarity=0.388 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-CCCc
Q 040215 87 KTLEKLEKEKETVLAQMNELKKILYGKFRD-SINL 120 (123)
Q Consensus 87 ~ei~~le~~~~~i~~~m~eLK~~LYaKFG~-~INL 120 (123)
.+++.+...+..+...|.++-..+=.++|. +|.+
T Consensus 4 ~~Ld~~~~~~~~~~~~l~~~~~~~~~~~~~~~lk~ 38 (92)
T PF05190_consen 4 EELDELREEYEEIEEELEELLEEIRKKLGIPSLKL 38 (92)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCT-TTBEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcEEE
Confidence 466777777777777777777777777776 5544
No 210
>TIGR02977 phageshock_pspA phage shock protein A. Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.
Probab=26.35 E-value=3e+02 Score=21.41 Aligned_cols=88 Identities=14% Similarity=0.163 Sum_probs=48.3
Q ss_pred HHhHHhhHHHHHHHHHHHHHhhhhhhhhhhhhhcCCCc-cceeeecceeeecChhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040215 19 FSKLNNRFHELEDEIKFAKETNDNLEDAGNELILTDED-IVRFQIGEVFAHVPREEVEIRIEEMKEVNSKTLEKLEKEKE 97 (123)
Q Consensus 19 FsrLn~r~~~l~~~l~~~k~~le~L~Da~~ElL~ddd~-~i~ykiGe~Fv~~~~~~a~e~LE~~~e~~~~ei~~le~~~~ 97 (123)
-++..+....++.++.........+..=+.--|..+++ ...--+. =..........|+.....+...+..|...+.
T Consensus 47 lA~~~a~~k~~e~~~~~~~~~~~~~~~~A~~Al~~G~EdLAr~Al~---~k~~~~~~~~~l~~~~~~~~~~v~~l~~~l~ 123 (219)
T TIGR02977 47 SARTIADKKELERRVSRLEAQVADWQEKAELALSKGREDLARAALI---EKQKAQELAEALERELAAVEETLAKLQEDIA 123 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555566666667777666666666655222433322 1111111 1223344555666666666677777777777
Q ss_pred HHHHHHHHHHHH
Q 040215 98 TVLAQMNELKKI 109 (123)
Q Consensus 98 ~i~~~m~eLK~~ 109 (123)
.++.++.++|..
T Consensus 124 ~L~~ki~~~k~k 135 (219)
T TIGR02977 124 KLQAKLAEARAR 135 (219)
T ss_pred HHHHHHHHHHHH
Confidence 777776666654
No 211
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]
Probab=26.01 E-value=3.4e+02 Score=21.68 Aligned_cols=92 Identities=22% Similarity=0.172 Sum_probs=47.8
Q ss_pred HHhHHHHhHHhhHHHHHHHHHHHHHhhhhhhhhhhhhhcCCCccceeeeccee-eecChhHHHHHHHHHHHHHHHHHHHH
Q 040215 14 QNINKFSKLNNRFHELEDEIKFAKETNDNLEDAGNELILTDEDIVRFQIGEVF-AHVPREEVEIRIEEMKEVNSKTLEKL 92 (123)
Q Consensus 14 qkIN~FsrLn~r~~~l~~~l~~~k~~le~L~Da~~ElL~ddd~~i~ykiGe~F-v~~~~~~a~e~LE~~~e~~~~ei~~l 92 (123)
+-|-.+.++..++..+....+.....-..-=.+.+|=|+.. ....+-..= -.-..+.....+....+.+...+..|
T Consensus 49 ~~~a~~k~~e~~~~~~~~~~~k~e~~A~~Al~~g~E~LAr~---al~~~~~le~~~~~~~~~~~~~~~~~~~l~~~~~~L 125 (225)
T COG1842 49 QAIARQKQLERKLEEAQARAEKLEEKAELALQAGNEDLARE---ALEEKQSLEDLAKALEAELQQAEEQVEKLKKQLAAL 125 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677788888888888888777766544433333332221 011100000 00012333444455555666666666
Q ss_pred HHHHHHHHHHHHHHHH
Q 040215 93 EKEKETVLAQMNELKK 108 (123)
Q Consensus 93 e~~~~~i~~~m~eLK~ 108 (123)
+.++.+++.++..||.
T Consensus 126 e~Ki~e~~~~~~~l~a 141 (225)
T COG1842 126 EQKIAELRAKKEALKA 141 (225)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 6666666666666654
No 212
>TIGR00020 prfB peptide chain release factor 2. In many but not all taxa, there is a conserved real translational frameshift at a TGA codon. RF-2 helps terminate translation at TGA codons and can therefore regulate its own production by readthrough when RF-2 is insufficient. There is a Pfam model called "RF-1" for the superfamily of RF-1, RF-2, mitochondrial, RF-H, etc.
Probab=25.97 E-value=4.3e+02 Score=22.79 Aligned_cols=37 Identities=19% Similarity=0.378 Sum_probs=16.6
Q ss_pred HHHHHHhHHHHhHHhhHHHHHHHHHHHHHhhhhhhhh
Q 040215 10 WEDQQNINKFSKLNNRFHELEDEIKFAKETNDNLEDA 46 (123)
Q Consensus 10 ~EDQqkIN~FsrLn~r~~~l~~~l~~~k~~le~L~Da 46 (123)
|.|+.+.-+-++-++.+..+-..++..+...+.+.++
T Consensus 45 w~d~~~~~~~~ke~~~l~~~v~~~~~~~~~~~d~~~l 81 (364)
T TIGR00020 45 WNDQERAQAVIKERSSLEAVLDTLEELKNSLEDLSEL 81 (364)
T ss_pred ccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5566554444444444444444444444444444333
No 213
>PRK11239 hypothetical protein; Provisional
Probab=25.91 E-value=1.5e+02 Score=23.95 Aligned_cols=26 Identities=19% Similarity=0.167 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040215 83 EVNSKTLEKLEKEKETVLAQMNELKK 108 (123)
Q Consensus 83 e~~~~ei~~le~~~~~i~~~m~eLK~ 108 (123)
..++.++..|+.++..++..+.+|..
T Consensus 186 ~~Le~rv~~Le~eva~L~~~l~~l~~ 211 (215)
T PRK11239 186 GDLQARVEALEIEVAELKQRLDSLLA 211 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44666777777777777766666654
No 214
>COG2919 Septum formation initiator [Cell division and chromosome partitioning]
Probab=25.86 E-value=2.2e+02 Score=20.25 Aligned_cols=36 Identities=19% Similarity=0.283 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040215 74 VEIRIEEMKEVNSKTLEKLEKEKETVLAQMNELKKI 109 (123)
Q Consensus 74 a~e~LE~~~e~~~~ei~~le~~~~~i~~~m~eLK~~ 109 (123)
+...+..+.+...++++.|..+...+..+++.|+..
T Consensus 51 ~~~~l~~qi~~~~~e~~~L~~~~~~l~~ei~~L~dg 86 (117)
T COG2919 51 DVLQLQRQIAAQQAELEKLSARNTALEAEIKDLKDG 86 (117)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 345566666688888888888888888888887753
No 215
>cd01107 HTH_BmrR Helix-Turn-Helix DNA binding domain of the BmrR transcription regulator. Helix-turn-helix (HTH) multidrug-efflux transporter transcription regulator, BmrR and YdfL of Bacillus subtilis, and related proteins; N-terminal domain. Bmr is a membrane protein which causes the efflux of a variety of toxic substances and antibiotics. BmrR is comprised of two distinct domains that harbor a regulatory (effector-binding) site and an active (DNA-binding) site. The conserved N-terminal domain contains a winged HTH motif that mediates DNA binding, while the C-terminal domain binds coactivating, toxic compounds. BmrR shares the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements.
Probab=25.77 E-value=1.9e+02 Score=19.85 Aligned_cols=32 Identities=13% Similarity=0.165 Sum_probs=23.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040215 72 EEVEIRIEEMKEVNSKTLEKLEKEKETVLAQM 103 (123)
Q Consensus 72 ~~a~e~LE~~~e~~~~ei~~le~~~~~i~~~m 103 (123)
+++...+....+.++.++..++...+.+...+
T Consensus 74 ~~~~~~l~~~~~~l~~~i~~l~~~~~~l~~~l 105 (108)
T cd01107 74 DELRKLLREKLAELEAEIEELQRILRLLEDRL 105 (108)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77778888888888888888777776666544
No 216
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=25.72 E-value=2e+02 Score=22.11 Aligned_cols=29 Identities=31% Similarity=0.375 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040215 79 EEMKEVNSKTLEKLEKEKETVLAQMNELK 107 (123)
Q Consensus 79 E~~~e~~~~ei~~le~~~~~i~~~m~eLK 107 (123)
+.....+..++..+..+++.+.....+.+
T Consensus 133 ~~e~~~L~~~~~~l~~~~e~~ek~~~e~~ 161 (189)
T PF10211_consen 133 EEEKEELEKQVQELKNKCEQLEKREEELR 161 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333333333
No 217
>PF02873 MurB_C: UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain; InterPro: IPR011601 This entry represents a C-terminal conserved region of UDP-N-acetylenolpyruvoylglucosamine reductase 1.1.1.158 from EC, which is also called UDP-N-acetylmuramate dehydrogenase. It is a part of the pathway for the biosynthesis of the UDP-N-acetylmuramoyl-pentapeptide, which is a precursor of bacterial peptidoglycan. ; GO: 0008762 UDP-N-acetylmuramate dehydrogenase activity, 0055114 oxidation-reduction process; PDB: 1MBB_A 2Q85_A 2MBR_A 1UXY_A 1MBT_A 1HSK_A 2GQU_A 2GQT_A 3I99_A 3TX1_A.
Probab=25.46 E-value=93 Score=21.99 Aligned_cols=26 Identities=35% Similarity=0.489 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCCCcCC
Q 040215 95 EKETVLAQMNELKKILYGKFRDSINLEE 122 (123)
Q Consensus 95 ~~~~i~~~m~eLK~~LYaKFG~~INLE~ 122 (123)
...++..-+...+...|.+|| |.||.
T Consensus 74 ta~dv~~Li~~v~~~V~~~~G--i~Le~ 99 (105)
T PF02873_consen 74 TAADVLALIEEVRERVKEKFG--IELEP 99 (105)
T ss_dssp -HHHHHHHHHHHHHHHHHHHS----B-B
T ss_pred CHHHHHHHHHHHHHHHHHHHC--Ceeee
Confidence 344666677778888999998 55554
No 218
>PF15456 Uds1: Up-regulated During Septation
Probab=25.43 E-value=2.7e+02 Score=20.29 Aligned_cols=79 Identities=16% Similarity=0.286 Sum_probs=46.4
Q ss_pred HhHHhhHHHHHHHHHHHHHhhhhhhhhhhhh--hcCCCccceeeecceeeecChhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040215 20 SKLNNRFHELEDEIKFAKETNDNLEDAGNEL--ILTDEDIVRFQIGEVFAHVPREEVEIRIEEMKEVNSKTLEKLEKEKE 97 (123)
Q Consensus 20 srLn~r~~~l~~~l~~~k~~le~L~Da~~El--L~ddd~~i~ykiGe~Fv~~~~~~a~e~LE~~~e~~~~ei~~le~~~~ 97 (123)
..|.+|..-+...+... -.+.||+.-+ +... -+-+-.|.+-+..++.+.|. ..+..++++..++.
T Consensus 32 ~~L~~R~~~lr~kl~le----~k~RdAa~sl~~l~~~-----~~~~~~~~~~~~~~~eeel~----~~~rk~ee~~~eL~ 98 (124)
T PF15456_consen 32 RSLDSRLEYLRRKLALE----SKIRDAAHSLSRLYSS-----SSRRARFSRESSLKAEEELA----ESDRKCEELAQELW 98 (124)
T ss_pred HHHHHHHHHHHHHHHHH----HHHHHHHHHHHHhcCC-----CccccCCCcchHHHHHHHHH----HHHhhHHHHHHHHH
Confidence 33444444444444421 2345677666 3222 12224455555666665555 77778888888888
Q ss_pred HHHHHHHHHHHHHH
Q 040215 98 TVLAQMNELKKILY 111 (123)
Q Consensus 98 ~i~~~m~eLK~~LY 111 (123)
.++.++.++...|-
T Consensus 99 ~le~R~~~~~~rLL 112 (124)
T PF15456_consen 99 KLENRLAEVRQRLL 112 (124)
T ss_pred HHHHHHHHHHHHHH
Confidence 88888888877663
No 219
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=25.38 E-value=3.1e+02 Score=22.71 Aligned_cols=44 Identities=20% Similarity=0.335 Sum_probs=29.5
Q ss_pred eecChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040215 67 AHVPREEVEIRIEEMKEVNSKTLEKLEKEKETVLAQMNELKKIL 110 (123)
Q Consensus 67 v~~~~~~a~e~LE~~~e~~~~ei~~le~~~~~i~~~m~eLK~~L 110 (123)
.+-....|...|.+..++..+.+..|+.+++.+..++......|
T Consensus 61 ~~~~l~~ak~eLqe~eek~e~~l~~Lq~ql~~l~akI~k~~~el 104 (258)
T PF15397_consen 61 NHKQLQQAKAELQEWEEKEESKLSKLQQQLEQLDAKIQKTQEEL 104 (258)
T ss_pred ChHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33446677777777777777777777777777776666555443
No 220
>COG4467 Regulator of replication initiation timing [Replication, recombination, and repair]
Probab=25.36 E-value=1.8e+02 Score=21.42 Aligned_cols=27 Identities=26% Similarity=0.356 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040215 84 VNSKTLEKLEKEKETVLAQMNELKKIL 110 (123)
Q Consensus 84 ~~~~ei~~le~~~~~i~~~m~eLK~~L 110 (123)
.+=..+..++..+..+-.+++.||++|
T Consensus 5 eiFd~v~~le~~l~~l~~el~~lK~~l 31 (114)
T COG4467 5 EIFDQVDNLEEQLGVLLAELGGLKQHL 31 (114)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333445555555555555555555554
No 221
>PF07047 OPA3: Optic atrophy 3 protein (OPA3); InterPro: IPR010754 OPA3 deficiency causes type III 3-methylglutaconic aciduria (MGA) in humans. This disease manifests with early bilateral optic atrophy, spasticity, extrapyramidal dysfunction, ataxia, and cognitive deficits, but normal longevity []. This family consists of several optic atrophy 3 (OPA3) proteins and related proteins from other eukaryotic species, the function is unknown.
Probab=25.32 E-value=57 Score=23.83 Aligned_cols=50 Identities=16% Similarity=0.129 Sum_probs=26.2
Q ss_pred ceeeecceeeecChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040215 58 VRFQIGEVFAHVPREEVEIRIEEMKEVNSKTLEKLEKEKETVLAQMNELK 107 (123)
Q Consensus 58 i~ykiGe~Fv~~~~~~a~e~LE~~~e~~~~ei~~le~~~~~i~~~m~eLK 107 (123)
+.|-||-..+....-.....=.+.-+..+.+++.|+.++.++..++..++
T Consensus 83 fiF~Va~~li~~E~~Rs~~ke~~Ke~~~~~~l~~L~~~i~~L~~~~~~~~ 132 (134)
T PF07047_consen 83 FIFSVAAGLIIYEYWRSARKEAKKEEELQERLEELEERIEELEEQVEKQQ 132 (134)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44444444443333333333233334555667777777777776666654
No 222
>PF04859 DUF641: Plant protein of unknown function (DUF641); InterPro: IPR006943 This conserved region is found in a number of plant proteins of unknown function.
Probab=25.02 E-value=1.8e+02 Score=21.60 Aligned_cols=23 Identities=22% Similarity=0.317 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 040215 87 KTLEKLEKEKETVLAQMNELKKI 109 (123)
Q Consensus 87 ~ei~~le~~~~~i~~~m~eLK~~ 109 (123)
.-+.+|+.++..-+.++..||..
T Consensus 94 ~~~~kLe~e~~~Kdsei~~Lr~~ 116 (131)
T PF04859_consen 94 IVVKKLEAELRAKDSEIDRLREK 116 (131)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333444444444444444433
No 223
>KOG4010 consensus Coiled-coil protein TPD52 [General function prediction only]
Probab=24.98 E-value=1.5e+02 Score=23.77 Aligned_cols=35 Identities=31% Similarity=0.247 Sum_probs=19.3
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040215 70 PREEVEIRIEEMKEVNSKTLEKLEKEKETVLAQMN 104 (123)
Q Consensus 70 ~~~~a~e~LE~~~e~~~~ei~~le~~~~~i~~~m~ 104 (123)
+.+...-.=++.++.+..++.++++++..++..++
T Consensus 34 s~s~~~~LSe~Ekeelr~EL~kvEeEI~TLrqVLa 68 (208)
T KOG4010|consen 34 SASEFEALSEEEKEELRTELAKVEEEIVTLRQVLA 68 (208)
T ss_pred hhhHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444456666666666666666655444433
No 224
>PF03670 UPF0184: Uncharacterised protein family (UPF0184); InterPro: IPR022788 This family of proteins has no known function.
Probab=24.91 E-value=2.3e+02 Score=19.65 Aligned_cols=32 Identities=28% Similarity=0.397 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040215 75 EIRIEEMKEVNSKTLEKLEKEKETVLAQMNEL 106 (123)
Q Consensus 75 ~e~LE~~~e~~~~ei~~le~~~~~i~~~m~eL 106 (123)
-..|......+..-++.|+.+-+.+..++.+|
T Consensus 28 ~~~ins~LD~Lns~LD~LE~rnD~l~~~L~~L 59 (83)
T PF03670_consen 28 YAAINSMLDQLNSCLDHLEQRNDHLHAQLQEL 59 (83)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 35566666677777777777777777776655
No 225
>PF06103 DUF948: Bacterial protein of unknown function (DUF948); InterPro: IPR009293 This family consists of bacterial sequences several of which are thought to be general stress proteins.
Probab=24.88 E-value=2.1e+02 Score=18.84 Aligned_cols=43 Identities=14% Similarity=0.162 Sum_probs=27.0
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040215 70 PREEVEIRIEEMKEVNSKTLEKLEKEKETVLAQMNELKKILYG 112 (123)
Q Consensus 70 ~~~~a~e~LE~~~e~~~~ei~~le~~~~~i~~~m~eLK~~LYa 112 (123)
+...+...+.+....++.+++.+..+...+-.+.+++....-.
T Consensus 23 ~l~~~l~~~~~ti~~l~~~~~~i~~e~~~ll~~~n~l~~dv~~ 65 (90)
T PF06103_consen 23 KLKKTLDEVNKTIDTLQEQVDPITKEINDLLHNTNELLEDVNE 65 (90)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555666666677777777777777776666666554433
No 226
>KOG2266 consensus Chromatin-associated protein Dek and related proteins, contains SAP DNA binding domain [Chromatin structure and dynamics]
Probab=24.70 E-value=98 Score=28.31 Aligned_cols=30 Identities=40% Similarity=0.579 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCc
Q 040215 89 LEKLEKEKETVLAQMNELKKILYGKFRDSINL 120 (123)
Q Consensus 89 i~~le~~~~~i~~~m~eLK~~LYaKFG~~INL 120 (123)
|..+=.+.+=-..-|..+=++||++|| |.|
T Consensus 529 V~kILk~vdfntaTm~dIlKkl~~~f~--~dL 558 (594)
T KOG2266|consen 529 VKKILKEVDFNTATMKDILKKLYAKFP--IDL 558 (594)
T ss_pred HHHHHHhcCcchhhHHHHHHHHHHhCC--ccc
Confidence 333434444445567777789999999 877
No 227
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=24.66 E-value=3e+02 Score=20.59 Aligned_cols=32 Identities=31% Similarity=0.340 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040215 78 IEEMKEVNSKTLEKLEKEKETVLAQMNELKKI 109 (123)
Q Consensus 78 LE~~~e~~~~ei~~le~~~~~i~~~m~eLK~~ 109 (123)
|+.....+.++...|+.++..+..+...|-..
T Consensus 57 L~~el~~lt~el~~L~~EL~~l~sEk~~L~k~ 88 (140)
T PF10473_consen 57 LEEELEELTSELNQLELELDTLRSEKENLDKE 88 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444455555555555555555544444433
No 228
>COG3311 AlpA Predicted transcriptional regulator [Transcription]
Probab=24.60 E-value=99 Score=20.70 Aligned_cols=33 Identities=18% Similarity=0.137 Sum_probs=28.4
Q ss_pred hcCCCccceeeecceeeecChhHHHHHHHHHHH
Q 040215 51 ILTDEDIVRFQIGEVFAHVPREEVEIRIEEMKE 83 (123)
Q Consensus 51 L~ddd~~i~ykiGe~Fv~~~~~~a~e~LE~~~e 83 (123)
+.+...|-|.++|.-+|-...+++.+.++..+.
T Consensus 34 i~~~~FPkpvklG~r~v~W~~SEI~~Wi~~~~~ 66 (70)
T COG3311 34 IKDGTFPKPVKLGGRSVAWPESEIDEWIASRKA 66 (70)
T ss_pred HccCCCCCCeecCcccccccHHHHHHHHHHHHh
Confidence 556677999999999999999999999987654
No 229
>PF11853 DUF3373: Protein of unknown function (DUF3373); InterPro: IPR021803 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 472 to 574 amino acids in length.
Probab=24.54 E-value=68 Score=28.87 Aligned_cols=30 Identities=23% Similarity=0.338 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040215 80 EMKEVNSKTLEKLEKEKETVLAQMNELKKIL 110 (123)
Q Consensus 80 ~~~e~~~~ei~~le~~~~~i~~~m~eLK~~L 110 (123)
.+...++ +|++|+.+++++++++.+|...+
T Consensus 25 ~~~~~~q-kie~L~kql~~Lk~q~~~l~~~v 54 (489)
T PF11853_consen 25 DDIDLLQ-KIEALKKQLEELKAQQDDLNDRV 54 (489)
T ss_pred hhhHHHH-HHHHHHHHHHHHHHhhccccccc
No 230
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=24.26 E-value=7.5e+02 Score=25.21 Aligned_cols=34 Identities=32% Similarity=0.266 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040215 75 EIRIEEMKEVNSKTLEKLEKEKETVLAQMNELKK 108 (123)
Q Consensus 75 ~e~LE~~~e~~~~ei~~le~~~~~i~~~m~eLK~ 108 (123)
...-++....+.+++..+...++.+...+.+||+
T Consensus 979 ~~e~~~~~~E~k~~~~~~k~~~e~i~k~~~~lk~ 1012 (1293)
T KOG0996|consen 979 YKEAEESLKEIKKELRDLKSELENIKKSENELKA 1012 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455556777777777777777777777776
No 231
>PRK04863 mukB cell division protein MukB; Provisional
Probab=24.26 E-value=7.9e+02 Score=25.25 Aligned_cols=34 Identities=12% Similarity=0.241 Sum_probs=16.9
Q ss_pred HHHHhHHhhHHHHHHHHHHHHHhhhhhhhhhhhh
Q 040215 17 NKFSKLNNRFHELEDEIKFAKETNDNLEDAGNEL 50 (123)
Q Consensus 17 N~FsrLn~r~~~l~~~l~~~k~~le~L~Da~~El 50 (123)
..|...++.+..++..+..+.+.+..+...-.+|
T Consensus 1013 ~q~~q~~q~l~slksslq~~~e~L~E~eqe~~~~ 1046 (1486)
T PRK04863 1013 AQLAQYNQVLASLKSSYDAKRQMLQELKQELQDL 1046 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 4455555555555555555554444443333333
No 232
>KOG3856 consensus Uncharacterized conserved protein [Function unknown]
Probab=24.12 E-value=2.3e+02 Score=21.40 Aligned_cols=35 Identities=17% Similarity=0.246 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 040215 82 KEVNSKTLEKLEKEKETVLAQMNELKKILYGKFRD 116 (123)
Q Consensus 82 ~e~~~~ei~~le~~~~~i~~~m~eLK~~LYaKFG~ 116 (123)
.+.+.+++.++-.+..+..+.+..|-.+.|++=|.
T Consensus 12 ye~~kaEL~elikkrqe~eetl~nLe~qIY~~Egs 46 (135)
T KOG3856|consen 12 YEDTKAELAELIKKRQELEETLANLERQIYAFEGS 46 (135)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 35678888888889999999999999999997664
No 233
>PF14584 DUF4446: Protein of unknown function (DUF4446)
Probab=24.04 E-value=2.7e+02 Score=20.97 Aligned_cols=33 Identities=21% Similarity=0.375 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040215 78 IEEMKEVNSKTLEKLEKEKETVLAQMNELKKIL 110 (123)
Q Consensus 78 LE~~~e~~~~ei~~le~~~~~i~~~m~eLK~~L 110 (123)
||........+++.+..+.+.++.++..|+..+
T Consensus 44 lE~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 76 (151)
T PF14584_consen 44 LEDLLNELFDQIDELKEELEELEKRIEELEEKL 76 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444455566666666666666666666666655
No 234
>PF06120 Phage_HK97_TLTM: Tail length tape measure protein; InterPro: IPR009302 This entry consists of the tail length tape measure protein from Bacteriophage HK97 and related sequences from Escherichia coli (strain K12).
Probab=23.84 E-value=4.4e+02 Score=22.19 Aligned_cols=86 Identities=14% Similarity=0.161 Sum_probs=39.2
Q ss_pred HhHHhhHHHHHHHHHHHHHhhhhhhhhhhh--h-hcCCCccceeeecceeeecChhHHHHHHHHHHHHH---HHHHHHHH
Q 040215 20 SKLNNRFHELEDEIKFAKETNDNLEDAGNE--L-ILTDEDIVRFQIGEVFAHVPREEVEIRIEEMKEVN---SKTLEKLE 93 (123)
Q Consensus 20 srLn~r~~~l~~~l~~~k~~le~L~Da~~E--l-L~ddd~~i~ykiGe~Fv~~~~~~a~e~LE~~~e~~---~~ei~~le 93 (123)
++++.-+.+.+..|..++.+++.|.+.-.- . +.+....+...+-..| .+..++++.+......+ +.+++...
T Consensus 77 ~k~~~si~~q~~~i~~l~~~i~~l~~~i~~y~~~~~~~~~~~~~~~~n~~--~~~~~~t~~la~~t~~L~~~~~~l~q~~ 154 (301)
T PF06120_consen 77 AKAEESIAAQKRAIEDLQKKIDSLKDQIKNYQQQLAEKGITENGYIINHL--MSQADATRKLAEATRELAVAQERLEQMQ 154 (301)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCcchHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555666666666655554422 2 3333222222221111 23455665555544443 33444444
Q ss_pred HHHHHHHHHHHHHH
Q 040215 94 KEKETVLAQMNELK 107 (123)
Q Consensus 94 ~~~~~i~~~m~eLK 107 (123)
++...+...++.+.
T Consensus 155 ~k~~~~q~~l~~~~ 168 (301)
T PF06120_consen 155 SKASETQATLNDLT 168 (301)
T ss_pred HHHHHHHHHHHHHH
Confidence 45555555554443
No 235
>PRK15396 murein lipoprotein; Provisional
Probab=23.79 E-value=2.4e+02 Score=19.14 Aligned_cols=32 Identities=9% Similarity=0.162 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040215 81 MKEVNSKTLEKLEKEKETVLAQMNELKKILYG 112 (123)
Q Consensus 81 ~~e~~~~ei~~le~~~~~i~~~m~eLK~~LYa 112 (123)
..+++..++..|..+.+.+....+.++...++
T Consensus 26 kvd~LssqV~~L~~kvdql~~dv~~~~~~~~~ 57 (78)
T PRK15396 26 KIDQLSSDVQTLNAKVDQLSNDVNAMRSDVQA 57 (78)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34466677777777777777777777766654
No 236
>PRK07342 peptide chain release factor 2; Provisional
Probab=23.47 E-value=4.8e+02 Score=22.41 Aligned_cols=36 Identities=25% Similarity=0.425 Sum_probs=18.9
Q ss_pred cHHHHHHhHHHHhHHhhHHHHHHHHHHHHHhhhhhhhhh
Q 040215 9 TWEDQQNINKFSKLNNRFHELEDEIKFAKETNDNLEDAG 47 (123)
Q Consensus 9 t~EDQqkIN~FsrLn~r~~~l~~~l~~~k~~le~L~Da~ 47 (123)
-|.|+.+..+-++ ++..|+..+....+-...++|+.
T Consensus 8 ~w~d~~~~~~~~k---e~~~l~~~v~~~~~~~~~~~~~~ 43 (339)
T PRK07342 8 LWNDAQEAQKLMR---ERQQLDDSINGINHLEQTLNDNI 43 (339)
T ss_pred hhcCHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHH
Confidence 4788877555444 44444444444444444444443
No 237
>COG5019 CDC3 Septin family protein [Cell division and chromosome partitioning / Cytoskeleton]
Probab=23.46 E-value=2.6e+02 Score=24.44 Aligned_cols=37 Identities=24% Similarity=0.363 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040215 75 EIRIEEMKEVNSKTLEKLEKEKETVLAQMNELKKILY 111 (123)
Q Consensus 75 ~e~LE~~~e~~~~ei~~le~~~~~i~~~m~eLK~~LY 111 (123)
+..|++.-..+.+++..+..+++++..++..++.+|=
T Consensus 330 e~~l~~~E~~l~~e~~~~n~~Le~~~~~l~~~e~~l~ 366 (373)
T COG5019 330 EKRLEELEQNLIEERKELNSKLEEIQKKLEDLEKRLE 366 (373)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566667777888888888888888888888888764
No 238
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=23.39 E-value=5.6e+02 Score=23.16 Aligned_cols=23 Identities=30% Similarity=0.336 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 040215 84 VNSKTLEKLEKEKETVLAQMNEL 106 (123)
Q Consensus 84 ~~~~ei~~le~~~~~i~~~m~eL 106 (123)
.++.++.++..+++.+..++..+
T Consensus 432 ~l~~~l~~~~~~~~~~~~~~~~~ 454 (650)
T TIGR03185 432 EAQNELFRSEAEIEELLRQLETL 454 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333
No 239
>KOG0243 consensus Kinesin-like protein [Cytoskeleton]
Probab=23.34 E-value=7.5e+02 Score=24.64 Aligned_cols=73 Identities=23% Similarity=0.325 Sum_probs=38.1
Q ss_pred HhhHHHHHHHHHHHHHhhhhhhhhhhhh-hcCCCccceeeecceeeecChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040215 23 NNRFHELEDEIKFAKETNDNLEDAGNEL-ILTDEDIVRFQIGEVFAHVPREEVEIRIEEMKEVNSKTLEKLEKEKETVLA 101 (123)
Q Consensus 23 n~r~~~l~~~l~~~k~~le~L~Da~~El-L~ddd~~i~ykiGe~Fv~~~~~~a~e~LE~~~e~~~~ei~~le~~~~~i~~ 101 (123)
..++......|+.+..++++++.--.++ . +| +.+......|-..+..+++.+..-..++.....
T Consensus 440 e~e~~~~~~~ieele~el~~~~~~l~~~~e-------------~~--~~~~~~~~~l~~~~~~~k~~L~~~~~el~~~~e 504 (1041)
T KOG0243|consen 440 EKEKKEMAEQIEELEEELENLEKQLKDLTE-------------LY--MNQLEIKELLKEEKEKLKSKLQNKNKELESLKE 504 (1041)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------HH--hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555666666666655544444 2 11 334445555555555555555555555555555
Q ss_pred HHHHHHHHH
Q 040215 102 QMNELKKIL 110 (123)
Q Consensus 102 ~m~eLK~~L 110 (123)
+..+++..|
T Consensus 505 e~~~~~~~l 513 (1041)
T KOG0243|consen 505 ELQQAKATL 513 (1041)
T ss_pred HHHHHHHHH
Confidence 555555443
No 240
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=23.27 E-value=3.4e+02 Score=26.65 Aligned_cols=93 Identities=20% Similarity=0.228 Sum_probs=51.9
Q ss_pred HhHHhhHHHHHHHHHHHHHhhhhhhhhhhhh-hcCCCccceeeecceeeecC--hhHHHHHHHHHHHHHHHHHHHHHHHH
Q 040215 20 SKLNNRFHELEDEIKFAKETNDNLEDAGNEL-ILTDEDIVRFQIGEVFAHVP--REEVEIRIEEMKEVNSKTLEKLEKEK 96 (123)
Q Consensus 20 srLn~r~~~l~~~l~~~k~~le~L~Da~~El-L~ddd~~i~ykiGe~Fv~~~--~~~a~e~LE~~~e~~~~ei~~le~~~ 96 (123)
+++..+..+++..++...+.++.+....... -.-. ..+-.++....... ..+..+.++..+..+...+..++.++
T Consensus 617 ~~~~~~~~~~e~~l~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l 694 (1201)
T PF12128_consen 617 QSAEERQEELEKQLKQINKKIEELKREITQAEQELK--QAEQDLQRLKNEREQLKQEIEEAKEERKEQIEEQLNELEEEL 694 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555566666655555544444333322 1100 11222333332222 33456677777788888888888888
Q ss_pred HHHHHHHHHHHHHHHHhc
Q 040215 97 ETVLAQMNELKKILYGKF 114 (123)
Q Consensus 97 ~~i~~~m~eLK~~LYaKF 114 (123)
..+..++..++..+-..+
T Consensus 695 ~~~~~e~~~~~~~~~~~~ 712 (1201)
T PF12128_consen 695 KQLKQELEELLEELKEQL 712 (1201)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 888888887777665544
No 241
>cd01109 HTH_YyaN Helix-Turn-Helix DNA binding domain of the MerR-like transcription regulators YyaN and YraB. Putative helix-turn-helix (HTH) MerR-like transcription regulators of Bacillus subtilis, YyaN and YraB, and related proteins; N-terminal domain. Based on sequence similarity, these proteins are predicted to function as transcription regulators that mediate responses to stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules such as metal ions, drugs, and organic substrates.
Probab=23.17 E-value=2.6e+02 Score=19.20 Aligned_cols=33 Identities=15% Similarity=0.092 Sum_probs=21.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040215 71 REEVEIRIEEMKEVNSKTLEKLEKEKETVLAQM 103 (123)
Q Consensus 71 ~~~a~e~LE~~~e~~~~ei~~le~~~~~i~~~m 103 (123)
.++....|+.....++.++..|+..+..+...+
T Consensus 77 ~~~~~~~l~~~~~~l~~~i~~l~~~~~~l~~~~ 109 (113)
T cd01109 77 IPERLELLEEHREELEEQIAELQETLAYLDYKI 109 (113)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566777777777777777776666665544
No 242
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=22.81 E-value=2.2e+02 Score=18.34 Aligned_cols=27 Identities=11% Similarity=0.176 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040215 79 EEMKEVNSKTLEKLEKEKETVLAQMNE 105 (123)
Q Consensus 79 E~~~e~~~~ei~~le~~~~~i~~~m~e 105 (123)
+...+.+...|-....+++.+..++..
T Consensus 17 e~~ie~Ln~~v~~Qq~~I~~L~~~l~~ 43 (69)
T PF04102_consen 17 EDTIEELNDVVTEQQRQIDRLQRQLRL 43 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333334444444444444444444333
No 243
>PF11641 Antigen_Bd37: Glycosylphosphatidylinositol-anchored merozoite surface protein; InterPro: IPR021669 This family of proteins represents the core region of Bd37, a surface antigen of B.divergens which is GPI-anchored at the surface of the merozoite. The structure of the protein consists of mainly alpha folds and has three sub domains []. ; PDB: 2JO7_A.
Probab=22.72 E-value=1.4e+02 Score=24.13 Aligned_cols=28 Identities=29% Similarity=0.368 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 040215 86 SKTLEKLEKEKETVLAQMNELKKILYGKFRD 116 (123)
Q Consensus 86 ~~ei~~le~~~~~i~~~m~eLK~~LYaKFG~ 116 (123)
..++..|-.++=+.+..|-.| ||+.||.
T Consensus 196 ~~elk~Lia~lI~~Re~mMDL---lYGpiGh 223 (224)
T PF11641_consen 196 ATELKTLIAELIEQREKMMDL---LYGPIGH 223 (224)
T ss_dssp -HHHHHHHHHHHHHHHHHHHH---HH--SS-
T ss_pred hHHHHHHHHHHHHHHHHHHHH---hcCCcCC
Confidence 345555555555555555554 8999996
No 244
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=22.68 E-value=4.2e+02 Score=25.88 Aligned_cols=33 Identities=33% Similarity=0.485 Sum_probs=16.7
Q ss_pred HHHhHHhhHHHHHHHHHHHHHhhhhhhhhhhhh
Q 040215 18 KFSKLNNRFHELEDEIKFAKETNDNLEDAGNEL 50 (123)
Q Consensus 18 ~FsrLn~r~~~l~~~l~~~k~~le~L~Da~~El 50 (123)
+...+..++..+..++...+..+..+.+.-.++
T Consensus 675 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 707 (1163)
T COG1196 675 ELAELEAQLEKLEEELKSLKNELRSLEDLLEEL 707 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444445555555555555555555555444
No 245
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=22.66 E-value=2.8e+02 Score=25.44 Aligned_cols=7 Identities=57% Similarity=0.752 Sum_probs=2.5
Q ss_pred HHHHHHH
Q 040215 90 EKLEKEK 96 (123)
Q Consensus 90 ~~le~~~ 96 (123)
..|+.+.
T Consensus 160 ~~Le~e~ 166 (546)
T PF07888_consen 160 EQLEEEV 166 (546)
T ss_pred HHHHHHH
Confidence 3333333
No 246
>PF04508 Pox_A_type_inc: Viral A-type inclusion protein repeat ; InterPro: IPR007596 The repeat is found in the A-type inclusion protein of the Poxvirus family [].; GO: 0016032 viral reproduction
Probab=22.64 E-value=1.4e+02 Score=15.99 Aligned_cols=16 Identities=13% Similarity=0.187 Sum_probs=7.6
Q ss_pred HHHHHHHHHHHHHHHH
Q 040215 84 VNSKTLEKLEKEKETV 99 (123)
Q Consensus 84 ~~~~ei~~le~~~~~i 99 (123)
.+..+|..|+.++..|
T Consensus 5 rlr~rI~dLer~L~~C 20 (23)
T PF04508_consen 5 RLRNRISDLERQLSEC 20 (23)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3444455555554444
No 247
>PF06720 Phi-29_GP16_7: Bacteriophage phi-29 early protein GP16.7; InterPro: IPR009595 The early-expressed gene 16.7 is conserved in bacteriophage phi-29 and related phages. It encodes a membrane protein, GP16.7, consisting of an N-terminal transmembrane domain and a C-terminal DNA-binding and dimerisation domain. GP16.7 plays an important role in organising membrane-associated bacteriophage DNA replication [, ]. The C-terminal domain has a similar secondary structure similar to homeodomains, but forms a fundamentally different tertiary structure consisting of a six-helical dimeric fold []. Multimerisation of this dimer leads to efficient DNA binding.; PDB: 2C5R_B 2BNK_A 1ZAE_B.
Probab=22.62 E-value=37 Score=25.21 Aligned_cols=36 Identities=22% Similarity=0.456 Sum_probs=3.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCCCCCc
Q 040215 85 NSKTLEKLEKEKETVLAQMNELKKILYGK-FRDSINL 120 (123)
Q Consensus 85 ~~~ei~~le~~~~~i~~~m~eLK~~LYaK-FG~~INL 120 (123)
++..++.|...+......+++|--++|+| +|++||+
T Consensus 32 ~edyiEdL~k~i~q~~qil~elne~i~nR~id~t~~~ 68 (130)
T PF06720_consen 32 LEDYIEDLNKRIQQRTQILSELNEVIYNRSIDKTVNL 68 (130)
T ss_dssp -------------------------------SS-SSS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCcchhH
Confidence 44557777777777777888888899987 6778886
No 248
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=22.41 E-value=1.8e+02 Score=22.41 Aligned_cols=24 Identities=42% Similarity=0.522 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 040215 84 VNSKTLEKLEKEKETVLAQMNELK 107 (123)
Q Consensus 84 ~~~~ei~~le~~~~~i~~~m~eLK 107 (123)
.+..+|..|+.+...+..++.+|+
T Consensus 124 ~l~~~i~~L~~e~~~L~~~~~~l~ 147 (189)
T PF10211_consen 124 ELEEEIEELEEEKEELEKQVQELK 147 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444443
No 249
>PF06970 RepA_N: Replication initiator protein A (RepA) N-terminus; InterPro: IPR010724 This entry represents the N terminus (approximately 80 residues) of replication initiator protein A (RepA), a DNA replication initiator in plasmids []. Most proteins in this entry are bacterial, but archaeal and eukaryotic members are also included.
Probab=22.35 E-value=61 Score=21.64 Aligned_cols=26 Identities=23% Similarity=0.203 Sum_probs=20.8
Q ss_pred cceeeecChhHHHHHHHHHHHHHHHH
Q 040215 63 GEVFAHVPREEVEIRIEEMKEVNSKT 88 (123)
Q Consensus 63 Ge~Fv~~~~~~a~e~LE~~~e~~~~e 88 (123)
|.+||..+.++..+.|-.....+.+-
T Consensus 47 G~vYi~~s~eel~~~L~~s~~tv~~~ 72 (76)
T PF06970_consen 47 GNVYIIFSIEELMELLNCSKSTVIKA 72 (76)
T ss_pred CCEEEEeeHHHHHHHHCCCHHHHHHH
Confidence 99999999999999987666555443
No 250
>cd04779 HTH_MerR-like_sg4 Helix-Turn-Helix DNA binding domain of putative transcription regulators from the MerR superfamily. Putative helix-turn-helix (HTH) MerR-like transcription regulators (subgroup 4). Based on sequence similarity, these proteins are predicted to function as transcription regulators that mediate responses to stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules such as metal ions, drugs, and organic substrates.
Probab=22.33 E-value=3.2e+02 Score=19.94 Aligned_cols=31 Identities=6% Similarity=0.160 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040215 77 RIEEMKEVNSKTLEKLEKEKETVLAQMNELK 107 (123)
Q Consensus 77 ~LE~~~e~~~~ei~~le~~~~~i~~~m~eLK 107 (123)
.+......+...+..++.++..+..-...|.
T Consensus 78 ~~~~~~~~l~~~i~~Le~~l~~L~~~~~~l~ 108 (134)
T cd04779 78 EVAQEVQLVCDQIDGLEHRLKQLKPIASQTD 108 (134)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555666666666666666655555553
No 251
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=22.32 E-value=3.9e+02 Score=20.96 Aligned_cols=90 Identities=19% Similarity=0.180 Sum_probs=41.2
Q ss_pred HHHhHHhhHHHHHHHHHHHHHhhhhhhhhhhhhhcCCCccceeeecceeeecChhHH---HHHHHHHHHHHHHHHHHHHH
Q 040215 18 KFSKLNNRFHELEDEIKFAKETNDNLEDAGNELILTDEDIVRFQIGEVFAHVPREEV---EIRIEEMKEVNSKTLEKLEK 94 (123)
Q Consensus 18 ~FsrLn~r~~~l~~~l~~~k~~le~L~Da~~ElL~ddd~~i~ykiGe~Fv~~~~~~a---~e~LE~~~e~~~~ei~~le~ 94 (123)
+...+-++..+|+.+|......+..|+-.....-.-. +..--+|+ ++.-...+| -+..+.....++..|+.|+.
T Consensus 135 R~e~~E~ki~eLE~el~~~~~~lk~lE~~~~~~~~re-~~~e~~i~--~L~~~lkeaE~Rae~aE~~v~~Le~~id~le~ 211 (237)
T PF00261_consen 135 RAEAAESKIKELEEELKSVGNNLKSLEASEEKASERE-DEYEEKIR--DLEEKLKEAENRAEFAERRVKKLEKEIDRLED 211 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhhchhHHHHHHHHHHHHHHHHHhhhhhhhhhHHH-HHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555666666666666655555544433221000 01111221 222222222 23334445555556666666
Q ss_pred HHHHHHHHHHHHHHHH
Q 040215 95 EKETVLAQMNELKKIL 110 (123)
Q Consensus 95 ~~~~i~~~m~eLK~~L 110 (123)
++...+.....++..|
T Consensus 212 eL~~~k~~~~~~~~el 227 (237)
T PF00261_consen 212 ELEKEKEKYKKVQEEL 227 (237)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 6655555555555544
No 252
>PRK02654 putative inner membrane protein translocase component YidC; Provisional
Probab=22.32 E-value=1e+02 Score=26.89 Aligned_cols=32 Identities=16% Similarity=0.123 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 040215 84 VNSKTLEKLEKEKETVLAQMNELKKILYGKFR 115 (123)
Q Consensus 84 ~~~~ei~~le~~~~~i~~~m~eLK~~LYaKFG 115 (123)
++++.++++.++...-..+|++=-..||.++|
T Consensus 62 emqkk~~eIqeKYKdDpqk~QqEmmkLYKE~G 93 (375)
T PRK02654 62 VMQKRQAEIQERYKNDPQKQQEEMGKLMKEFG 93 (375)
T ss_pred hhhhHHHHHHHHhcCCHHHHHHHHHHHHHHcC
Confidence 45555566777666656666666679999999
No 253
>TIGR00019 prfA peptide chain release factor 1. This model describes peptide chain release factor 1 (PrfA, RF-1), and excludes the related peptide chain release factor 2 (PrfB, RF-2). RF-1 helps recognize and terminate translation at UAA and UAG stop codons. The mitochondrial release factors are prfA-like, although not included above the trusted cutoff for this model. RF-1 does not have a translational frameshift.
Probab=22.11 E-value=5.2e+02 Score=22.31 Aligned_cols=36 Identities=28% Similarity=0.435 Sum_probs=15.9
Q ss_pred cHHHHHHhHHHHhHHhhHHHHHHHHHHHHHhhhhhhhhh
Q 040215 9 TWEDQQNINKFSKLNNRFHELEDEIKFAKETNDNLEDAG 47 (123)
Q Consensus 9 t~EDQqkIN~FsrLn~r~~~l~~~l~~~k~~le~L~Da~ 47 (123)
-|.|+.+..+-++ ++..|+.-+.....-...+.|+.
T Consensus 28 ~w~d~~~~~~~~k---~~~~l~~~v~~~~~~~~~~~~~~ 63 (360)
T TIGR00019 28 VISDQDKLRKLSK---EYSQLEEIVDCYREYQQAQEDIK 63 (360)
T ss_pred cccCHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556655444443 44444444444333333334443
No 254
>COG2825 HlpA Outer membrane protein [Cell envelope biogenesis, outer membrane]
Probab=22.11 E-value=1.6e+02 Score=22.42 Aligned_cols=45 Identities=24% Similarity=0.445 Sum_probs=33.3
Q ss_pred eeecceeeecChh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040215 60 FQIGEVFAHVPRE-EVEIRIEEMKEVNSKTLEKLEKEKETVLAQMN 104 (123)
Q Consensus 60 ykiGe~Fv~~~~~-~a~e~LE~~~e~~~~ei~~le~~~~~i~~~m~ 104 (123)
.-.|-||.+.+.. .+...|+........++..++.++..+...+.
T Consensus 30 vn~~~i~~~~~~~k~~~~~le~~f~~~~~~lq~~~~el~~~~~kL~ 75 (170)
T COG2825 30 VNLGRIFQESPQAKKVSADLESEFKKRQKELQKMQKELKAKEAKLQ 75 (170)
T ss_pred ecHHHHHHHcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3467888888888 55777888887777777777777766666655
No 255
>PRK01318 membrane protein insertase; Provisional
Probab=21.97 E-value=2.8e+02 Score=24.93 Aligned_cols=49 Identities=14% Similarity=0.057 Sum_probs=37.1
Q ss_pred ecChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 040215 68 HVPREEVEIRIEEMKEVNSKTLEKLEKEKETVLAQMNELKKILYGKFRD 116 (123)
Q Consensus 68 ~~~~~~a~e~LE~~~e~~~~ei~~le~~~~~i~~~m~eLK~~LYaKFG~ 116 (123)
.+|..-.+-+--+....++-+++++.++..+-..+|+.--..||.|.|=
T Consensus 338 l~Pl~~~s~~s~~km~~lqP~~~~i~~kyk~d~~k~~~e~~~LYKk~~v 386 (521)
T PRK01318 338 LFPLTYKSYVSMAKMKVLQPKMQELKEKYKDDPQKMQQEMMELYKKEKV 386 (521)
T ss_pred HhhhHHHHHHHHHHHHHhhHHHHHHHHHhHhhHHHHHHHHHHHHHHcCC
Confidence 3455555555557777888999999999887777777777889999883
No 256
>PF07061 Swi5: Swi5; InterPro: IPR010760 This entry represents Swi5 and is involved in meiotic DNA repair synthesis and meiotic joint molecule formation []. It is known to interact with Swi2, Rhp51 and Swi6 [].
Probab=21.79 E-value=2.2e+02 Score=19.41 Aligned_cols=27 Identities=19% Similarity=0.303 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040215 84 VNSKTLEKLEKEKETVLAQMNELKKIL 110 (123)
Q Consensus 84 ~~~~ei~~le~~~~~i~~~m~eLK~~L 110 (123)
.+.+++.+|..+...+..++.+++..|
T Consensus 4 ~l~~~~~~L~~~~~~l~~~i~~~~~~l 30 (83)
T PF07061_consen 4 SLEAEIQELKEQIEQLEKEISELEAEL 30 (83)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 444555555555555555555555543
No 257
>PHA02107 hypothetical protein
Probab=21.56 E-value=1.7e+02 Score=23.26 Aligned_cols=31 Identities=6% Similarity=0.179 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040215 79 EEMKEVNSKTLEKLEKEKETVLAQMNELKKI 109 (123)
Q Consensus 79 E~~~e~~~~ei~~le~~~~~i~~~m~eLK~~ 109 (123)
.....+++.+|.+|+....+++.-|+-+|-.
T Consensus 183 S~Ri~EID~EI~~LQA~RKEiEDN~K~IKN~ 213 (216)
T PHA02107 183 SVRISEIDEEIKELQARRKEIEDNIKSIKNA 213 (216)
T ss_pred hhhHhHHhHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4566789999999999999999999998854
No 258
>cd04766 HTH_HspR Helix-Turn-Helix DNA binding domain of the HspR transcription regulator. Helix-turn-helix (HTH) transcription regulator HspR, N-terminal domain. Heat shock protein regulators (HspR) have been shown to regulate expression of specific regulons in response to high temperature or high osmolarity in Streptomyces and Helicobacter, respectively. These proteins share the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements. A typical MerR regulator is comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their conserved N-terminal domains contain predicted winged HTH motifs that mediate DNA binding, while the dissimilar C-terminal domains bind specific coactivator molecules.
Probab=21.56 E-value=2.5e+02 Score=18.51 Aligned_cols=19 Identities=37% Similarity=0.534 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 040215 92 LEKEKETVLAQMNELKKIL 110 (123)
Q Consensus 92 le~~~~~i~~~m~eLK~~L 110 (123)
|.+++..++.++.+|+..|
T Consensus 70 l~~~~~~l~~~l~~l~~~~ 88 (91)
T cd04766 70 LEEELAELRAELDELRARL 88 (91)
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 6667777777777776655
No 259
>KOG4571 consensus Activating transcription factor 4 [Transcription]
Probab=21.53 E-value=3.5e+02 Score=22.95 Aligned_cols=40 Identities=15% Similarity=0.165 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 040215 75 EIRIEEMKEVNSKTLEKLEKEKETVLAQMNELKKILYGKF 114 (123)
Q Consensus 75 ~e~LE~~~e~~~~ei~~le~~~~~i~~~m~eLK~~LYaKF 114 (123)
.|-|+...+.+.++-++|..+.++++.+|..||..+-+++
T Consensus 250 ~E~l~ge~~~Le~rN~~LK~qa~~lerEI~ylKqli~e~~ 289 (294)
T KOG4571|consen 250 KEALLGELEGLEKRNEELKDQASELEREIRYLKQLILEVY 289 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555566677777777788888888888886665543
No 260
>PF03148 Tektin: Tektin family; InterPro: IPR000435 Tektin heteropolymers form unique protofilaments of flagellar microtubules []. The proteins are predicted to form extended rods composed of 2 alpha- helical segments (~180 residues long) capable of forming coiled coils, interrupted by non-helical linkers []. The 2 segments are similar in sequence, indicating a gene duplication event. Along each tektin rod, cysteine residues occur with a periodicity of ~8nm, coincident with the axial repeat of tubulin dimers in microtubules []. It is proposed that the assembly of tektin heteropolymers produces filaments with repeats of 8, 16, 24, 32, 40, 48 and 96nm, generating the basis for the complex spatial arrangements of axonemal components [].; GO: 0000226 microtubule cytoskeleton organization, 0005874 microtubule
Probab=21.51 E-value=5.1e+02 Score=22.02 Aligned_cols=85 Identities=14% Similarity=0.171 Sum_probs=59.9
Q ss_pred HhHHhhHHHHHHHHHHHHHhhhhhhhhhhhhhcCCCccceeeec---------ceeeecChhHHHHHHHHHHHHHHHHHH
Q 040215 20 SKLNNRFHELEDEIKFAKETNDNLEDAGNELILTDEDIVRFQIG---------EVFAHVPREEVEIRIEEMKEVNSKTLE 90 (123)
Q Consensus 20 srLn~r~~~l~~~l~~~k~~le~L~Da~~ElL~ddd~~i~ykiG---------e~Fv~~~~~~a~e~LE~~~e~~~~ei~ 90 (123)
..|...+.....+|......+..|+.|..+-. -|.|+- -.=|.+-.|.++-.|-.....+..-+.
T Consensus 261 ~~Le~ql~~~~~ei~~~e~~i~~L~~ai~~k~------~~lkvaqTRL~~R~~RP~vElcrD~~q~~L~~Ev~~l~~~i~ 334 (384)
T PF03148_consen 261 NELEWQLKKTLQEIAEMEKNIEDLEKAIRDKE------GPLKVAQTRLENRTQRPNVELCRDPPQYGLIEEVKELRESIE 334 (384)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH------hhHHHHHHHHhhHhcCCchHHHHhhHHHHHHHHHHHHHHHHH
Confidence 35666677777777777777777777765441 122211 123456678888888888888999999
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 040215 91 KLEKEKETVLAQMNELKKIL 110 (123)
Q Consensus 91 ~le~~~~~i~~~m~eLK~~L 110 (123)
.|..++...+..++.|....
T Consensus 335 ~L~~~L~~a~~~l~~L~~~~ 354 (384)
T PF03148_consen 335 ALQEKLDEAEASLQKLERTR 354 (384)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 99999999888888887654
No 261
>PF08203 RNA_polI_A14: Yeast RNA polymerase I subunit RPA14; InterPro: IPR013239 Saccharomyces cerevisiae RNA polymerase I (Pol I) is a complex consisting of 14 subunits. Subunit RPA14 forms part of a Pol I subcomplex consisting of RPA14 and and RPA43. The RPA14 and RPA43 heterodimer is proposed to play a role in the recruitment of Pol I to the promoter []. ; PDB: 2RF4_F.
Probab=21.33 E-value=2.4e+02 Score=19.16 Aligned_cols=32 Identities=19% Similarity=0.256 Sum_probs=22.5
Q ss_pred cceeeecceeeecChhHHHHHHHHHHHHHHHHH
Q 040215 57 IVRFQIGEVFAHVPREEVEIRIEEMKEVNSKTL 89 (123)
Q Consensus 57 ~i~ykiGe~Fv~~~~~~a~e~LE~~~e~~~~ei 89 (123)
|+..+++.. -|++.++|...|+.-....+.-.
T Consensus 2 Pv~i~~~~~-~~v~k~ea~~fL~~FI~~~E~~~ 33 (76)
T PF08203_consen 2 PVVIHVRGS-QHVSKDEAEQFLTEFIDEKESIA 33 (76)
T ss_dssp --EEEESS--EE--HHHHHHHHHHHHHHHHSS-
T ss_pred CeEEEecCc-ccCCHHHHHHHHHHHHHHHHHHh
Confidence 567778888 89999999999999888777663
No 262
>PRK02201 putative inner membrane protein translocase component YidC; Provisional
Probab=21.11 E-value=2e+02 Score=24.72 Aligned_cols=48 Identities=13% Similarity=-0.022 Sum_probs=33.4
Q ss_pred cChhHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHhcCC
Q 040215 69 VPREEVEIRIEEMKEVNSKTLEKLEKEKETV------LAQMNELKKILYGKFRD 116 (123)
Q Consensus 69 ~~~~~a~e~LE~~~e~~~~ei~~le~~~~~i------~~~m~eLK~~LYaKFG~ 116 (123)
+|..-.+-+-.+....++-++++++++.... ..+++.--..||.+.|=
T Consensus 149 lPl~~k~~~s~~km~~lqPel~~Iq~Kyk~~~~d~~~~~k~q~e~~~Lykk~gi 202 (357)
T PRK02201 149 FLITFKSTFNQEKQEELQGKKAKIDAKYKDYKKDKQMKQRKQQEIQELYKKHNI 202 (357)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHcCC
Confidence 4444445555566667888888888888765 55566666789999883
No 263
>PRK11546 zraP zinc resistance protein; Provisional
Probab=21.06 E-value=2.2e+02 Score=21.48 Aligned_cols=19 Identities=21% Similarity=0.263 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHHHHh
Q 040215 95 EKETVLAQMNELKKILYGK 113 (123)
Q Consensus 95 ~~~~i~~~m~eLK~~LYaK 113 (123)
++..+..+|..|+.+||.+
T Consensus 90 kI~aL~kEI~~Lr~kL~e~ 108 (143)
T PRK11546 90 KINAVAKEMENLRQSLDEL 108 (143)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4666777788888877753
No 264
>TIGR01837 PHA_granule_1 poly(hydroxyalkanoate) granule-associated protein. This model describes a domain found in some proteins associated with polyhydroxyalkanoate (PHA) granules in a subset of species that have PHA inclusion granules. Included are two tandem proteins of Pseudomonas oleovorans, PhaI and PhaF, and their homologs in related species. PhaF proteins have a low-complexity C-terminal region with repeats similar to AAAKP.
Probab=21.04 E-value=1.3e+02 Score=21.45 Aligned_cols=22 Identities=27% Similarity=0.450 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 040215 86 SKTLEKLEKEKETVLAQMNELK 107 (123)
Q Consensus 86 ~~ei~~le~~~~~i~~~m~eLK 107 (123)
..+|+.|..+++.+..++.+|+
T Consensus 95 k~ev~~L~~RI~~Le~~l~~l~ 116 (118)
T TIGR01837 95 REEIEALSAKIEQLAVQVEELR 116 (118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 3666777777777777776665
No 265
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=21.00 E-value=3.4e+02 Score=21.35 Aligned_cols=32 Identities=16% Similarity=0.249 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040215 76 IRIEEMKEVNSKTLEKLEKEKETVLAQMNELK 107 (123)
Q Consensus 76 e~LE~~~e~~~~ei~~le~~~~~i~~~m~eLK 107 (123)
+.|+.....++..++..+.++.++..++.++.
T Consensus 66 e~L~~~~~~l~~~v~~q~~el~~L~~qi~~~~ 97 (251)
T PF11932_consen 66 ENLEVYNEQLERQVASQEQELASLEQQIEQIE 97 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444555555555555555555544443
No 266
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=21.00 E-value=4.6e+02 Score=21.31 Aligned_cols=23 Identities=17% Similarity=0.182 Sum_probs=12.1
Q ss_pred hHHhhHHHHHHHHHHHHHhhhhh
Q 040215 21 KLNNRFHELEDEIKFAKETNDNL 43 (123)
Q Consensus 21 rLn~r~~~l~~~l~~~k~~le~L 43 (123)
.+..++..++.++..++.++..|
T Consensus 78 ~~~~~l~~l~~~~~~l~a~~~~l 100 (423)
T TIGR01843 78 DVEADAAELESQVLRLEAEVARL 100 (423)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHH
Confidence 34445555556665555555444
No 267
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=20.99 E-value=5.1e+02 Score=25.66 Aligned_cols=76 Identities=24% Similarity=0.278 Sum_probs=48.0
Q ss_pred HHhhHHHHHHHHHHHHHhhhhhhhhhhhh-hcCCCccceeeecceeeecChhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040215 22 LNNRFHELEDEIKFAKETNDNLEDAGNEL-ILTDEDIVRFQIGEVFAHVPREEVEIRIEEMKEVNSKTLEKLEKEKETVL 100 (123)
Q Consensus 22 Ln~r~~~l~~~l~~~k~~le~L~Da~~El-L~ddd~~i~ykiGe~Fv~~~~~~a~e~LE~~~e~~~~ei~~le~~~~~i~ 100 (123)
|-..+.++.-.|...+...+.++|--.|| =--++ ..++.-. |-..++....+...|.....+.+
T Consensus 328 ltrqkadirc~LlEarrk~egfddk~~eLEKkrd~-----------al~dvr~----i~e~k~nve~elqsL~~l~aerq 392 (1265)
T KOG0976|consen 328 LTRQKADIRCALLEARRKAEGFDDKLNELEKKRDM-----------ALMDVRS----IQEKKENVEEELQSLLELQAERQ 392 (1265)
T ss_pred HHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHH-----------HHHhHHH----HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455566666667777778888888777 32221 1122223 33344466667777777778888
Q ss_pred HHHHHHHHHHHH
Q 040215 101 AQMNELKKILYG 112 (123)
Q Consensus 101 ~~m~eLK~~LYa 112 (123)
.+|.+||.+.++
T Consensus 393 eQidelKn~if~ 404 (1265)
T KOG0976|consen 393 EQIDELKNHIFR 404 (1265)
T ss_pred HHHHHHHHhhhh
Confidence 888888888764
No 268
>PRK00736 hypothetical protein; Provisional
Probab=20.95 E-value=2.5e+02 Score=18.23 Aligned_cols=30 Identities=20% Similarity=0.142 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040215 80 EMKEVNSKTLEKLEKEKETVLAQMNELKKI 109 (123)
Q Consensus 80 ~~~e~~~~ei~~le~~~~~i~~~m~eLK~~ 109 (123)
...+.+...|..-...++.+..++.-|...
T Consensus 19 ~tie~Ln~~v~~Qq~~i~~L~~ql~~L~~r 48 (68)
T PRK00736 19 KTIEELSDQLAEQWKTVEQMRKKLDALTER 48 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444444444444444444333
No 269
>PRK09039 hypothetical protein; Validated
Probab=20.92 E-value=3.4e+02 Score=22.84 Aligned_cols=25 Identities=16% Similarity=0.299 Sum_probs=12.2
Q ss_pred hHHhhHHHHHHHHHHHHHhhhhhhh
Q 040215 21 KLNNRFHELEDEIKFAKETNDNLED 45 (123)
Q Consensus 21 rLn~r~~~l~~~l~~~k~~le~L~D 45 (123)
.+..++..+..++...+.....|..
T Consensus 78 ~l~~~l~~l~~~l~~a~~~r~~Le~ 102 (343)
T PRK09039 78 DLQDSVANLRASLSAAEAERSRLQA 102 (343)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444555555555555444444444
No 270
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=20.79 E-value=7.1e+02 Score=23.38 Aligned_cols=40 Identities=15% Similarity=0.185 Sum_probs=26.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040215 71 REEVEIRIEEMKEVNSKTLEKLEKEKETVLAQMNELKKIL 110 (123)
Q Consensus 71 ~~~a~e~LE~~~e~~~~ei~~le~~~~~i~~~m~eLK~~L 110 (123)
...|+...-+..+.+..++..+...++.++.+++..+.++
T Consensus 630 LS~AEr~~~~EL~~~~~~l~~l~~si~~lk~k~~~Q~~~i 669 (717)
T PF10168_consen 630 LSEAEREFKKELERMKDQLQDLKASIEQLKKKLDYQQRQI 669 (717)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5566666666666666677777777777777776665544
No 271
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=20.77 E-value=3.3e+02 Score=21.10 Aligned_cols=27 Identities=22% Similarity=0.313 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040215 84 VNSKTLEKLEKEKETVLAQMNELKKIL 110 (123)
Q Consensus 84 ~~~~ei~~le~~~~~i~~~m~eLK~~L 110 (123)
.++.++..|..+...+..+...|+..+
T Consensus 108 ~l~~e~~~l~~~~e~Le~e~~~L~~~~ 134 (161)
T TIGR02894 108 RLKNQNESLQKRNEELEKELEKLRQRL 134 (161)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555555555555555554433
No 272
>PTZ00009 heat shock 70 kDa protein; Provisional
Probab=20.65 E-value=6.4e+02 Score=22.88 Aligned_cols=28 Identities=18% Similarity=0.246 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 040215 88 TLEKLEKEKETVLAQMNELKKILYGKFR 115 (123)
Q Consensus 88 ei~~le~~~~~i~~~m~eLK~~LYaKFG 115 (123)
..+.+..++.+++..+..+....|++=|
T Consensus 590 ~~~~~~~kl~eL~~~~~pi~~r~~~~~~ 617 (653)
T PTZ00009 590 EKEEFEHKQKEVESVCNPIMTKMYQAAG 617 (653)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 4556667777777777777767776644
No 273
>PF00012 HSP70: Hsp70 protein; InterPro: IPR013126 Heat shock proteins, Hsp70 chaperones help to fold many proteins. Hsp70 assisted folding involves repeated cycles of substrate binding and release. Hsp70 activity is ATP dependent. Hsp70 proteins are made up of two regions: the amino terminus is the ATPase domain and the carboxyl terminus is the substrate binding region []. Hsp70 proteins have an average molecular weight of 70 kDa [, , ]. In most species,there are many proteins that belong to the hsp70 family. Some of these are only expressed under stress conditions (strictly inducible), while some are present in cells under normal growth conditions and are not heat-inducible (constitutive or cognate) [, ]. Hsp70 proteins can be found in different cellular compartments(nuclear, cytosolic, mitochondrial, endoplasmic reticulum, for example).; PDB: 2P32_D 3D2F_A 2QXL_A 3D2E_C 3C7N_A 3FE1_C 4ANI_C 2V7Y_A 2KHO_A 3DPQ_B ....
Probab=20.54 E-value=5.6e+02 Score=22.16 Aligned_cols=37 Identities=14% Similarity=0.202 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHH
Q 040215 75 EIRIEEMKEVNSKT-----LEKLEKEKETVLAQMNELKKILY 111 (123)
Q Consensus 75 ~e~LE~~~e~~~~e-----i~~le~~~~~i~~~m~eLK~~LY 111 (123)
.+.+....+.+... .+.+..++++++..+..++...|
T Consensus 560 ~~~l~~~~~wl~~~~~~~~~~e~~~kl~~L~~~~~~i~~r~~ 601 (602)
T PF00012_consen 560 KKKLKETSDWLEDNGEDADKEEYKEKLEELKKVIEPIKKRYM 601 (602)
T ss_dssp HHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHHHhc
Confidence 44555555555444 66677777777777777666655
No 274
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=20.43 E-value=3.6e+02 Score=19.86 Aligned_cols=27 Identities=19% Similarity=0.272 Sum_probs=10.8
Q ss_pred hHHhhHHHHHHHHHHHHHhhhhhhhhh
Q 040215 21 KLNNRFHELEDEIKFAKETNDNLEDAG 47 (123)
Q Consensus 21 rLn~r~~~l~~~l~~~k~~le~L~Da~ 47 (123)
.|..|...++.++......+..+.++.
T Consensus 39 sL~~K~~~lE~eld~~~~~l~~~k~~l 65 (143)
T PF12718_consen 39 SLQKKNQQLEEELDKLEEQLKEAKEKL 65 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444444444433333333
No 275
>PF08336 P4Ha_N: Prolyl 4-Hydroxylase alpha-subunit, N-terminal region; InterPro: IPR013547 The members found in this entry are eukaryotic proteins, and include all three isoforms of the prolyl 4-hydroxylase alpha subunit. This enzyme (1.14.11.2 from EC) is important in the post-translational modification of collagen, as it catalyses the formation of 4-hydroxyproline. In vertebrates, the complete enzyme is an alpha2-beta2 tetramer; the beta-subunit is identical to protein disulphide isomerase [, , , ]. The function of the N-terminal region featured in this family does not seem to be known. ; GO: 0004656 procollagen-proline 4-dioxygenase activity, 0016702 oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen, 0055114 oxidation-reduction process, 0005783 endoplasmic reticulum
Probab=20.20 E-value=3e+02 Score=19.58 Aligned_cols=35 Identities=11% Similarity=0.139 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040215 74 VEIRIEEMKEVNSKTLEKLEKEKETVLAQMNELKK 108 (123)
Q Consensus 74 a~e~LE~~~e~~~~ei~~le~~~~~i~~~m~eLK~ 108 (123)
....|....+.++.+++.+..-++.++........
T Consensus 16 l~~~L~~Yi~~~~~kl~~l~~~~~~~~~~~~~~~~ 50 (134)
T PF08336_consen 16 LISNLRNYIEELQEKLDTLKRFLDEMKREHEKAKS 50 (134)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 34455555666666666666666555555554443
No 276
>PRK08453 fliD flagellar capping protein; Validated
Probab=20.15 E-value=2.2e+02 Score=26.69 Aligned_cols=38 Identities=16% Similarity=0.281 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 040215 78 IEEMKEVNSKTLEKLEKEKETVLAQMNELKKILYGKFR 115 (123)
Q Consensus 78 LE~~~e~~~~ei~~le~~~~~i~~~m~eLK~~LYaKFG 115 (123)
+......+..++..+..+++..+.+|...-..||++|-
T Consensus 619 l~~~~~sL~~q~k~L~~q~~~~e~rL~~ry~rl~~qFs 656 (673)
T PRK08453 619 LKIYEDSLTRDAKSLTKDKENAQELLKTRYDIMAERFA 656 (673)
T ss_pred ehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455567777888888888888888877788888883
No 277
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=20.13 E-value=3.4e+02 Score=22.62 Aligned_cols=15 Identities=20% Similarity=0.361 Sum_probs=6.2
Q ss_pred HHHHHHHHHHHhhhh
Q 040215 28 ELEDEIKFAKETNDN 42 (123)
Q Consensus 28 ~l~~~l~~~k~~le~ 42 (123)
++++.+...|..++.
T Consensus 132 d~ke~~ee~kekl~E 146 (290)
T COG4026 132 DLKEDYEELKEKLEE 146 (290)
T ss_pred HHHHHHHHHHHHHHH
Confidence 344444444443333
No 278
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=20.07 E-value=4.1e+02 Score=21.94 Aligned_cols=37 Identities=22% Similarity=0.222 Sum_probs=20.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040215 72 EEVEIRIEEMKEVNSKTLEKLEKEKETVLAQMNELKK 108 (123)
Q Consensus 72 ~~a~e~LE~~~e~~~~ei~~le~~~~~i~~~m~eLK~ 108 (123)
.++.+..+.....++.+++.|..++.....+++-|.+
T Consensus 73 qe~eek~e~~l~~Lq~ql~~l~akI~k~~~el~~L~T 109 (258)
T PF15397_consen 73 QEWEEKEESKLSKLQQQLEQLDAKIQKTQEELNFLST 109 (258)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555566666666665555555555544
Done!