Query 040215
Match_columns 123
No_of_seqs 106 out of 217
Neff 5.0
Searched_HMMs 29240
Date Mon Mar 25 09:37:23 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040215.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/040215hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2zqm_A Prefoldin beta subunit 99.9 1.3E-22 4.6E-27 142.1 15.2 110 7-116 3-113 (117)
2 1fxk_A Prefoldin; archaeal pro 99.9 9.6E-23 3.3E-27 141.2 14.0 104 12-115 3-107 (107)
3 1fxk_C Protein (prefoldin); ar 97.9 0.00043 1.5E-08 48.9 13.0 98 13-110 4-125 (133)
4 2zdi_C Prefoldin subunit alpha 97.9 0.00028 9.5E-09 51.3 11.8 101 10-110 9-135 (151)
5 3aei_A Prefoldin beta subunit 94.7 0.58 2E-05 31.8 10.1 83 26-110 16-98 (99)
6 2zqm_A Prefoldin beta subunit 88.3 0.87 3E-05 30.6 5.0 88 16-105 19-109 (117)
7 1fxk_A Prefoldin; archaeal pro 86.7 5 0.00017 26.3 8.2 89 14-104 12-103 (107)
8 2yy0_A C-MYC-binding protein; 85.7 2.2 7.5E-05 26.1 5.3 31 80-110 19-49 (53)
9 1ik9_A DNA repair protein XRCC 85.2 5.2 0.00018 30.6 8.5 58 57-114 103-180 (213)
10 1l8d_A DNA double-strand break 85.2 6.4 0.00022 26.2 10.1 39 73-111 64-102 (112)
11 1t2k_D Cyclic-AMP-dependent tr 83.4 3.4 0.00012 25.3 5.6 37 75-111 24-60 (61)
12 1go4_E MAD1 (mitotic arrest de 76.9 15 0.00053 25.2 9.4 80 18-98 13-93 (100)
13 2pnv_A Small conductance calci 76.8 4.9 0.00017 23.8 4.4 33 73-105 9-41 (43)
14 3nmd_A CGMP dependent protein 75.9 13 0.00046 24.2 6.7 29 82-110 35-63 (72)
15 2wt7_A Proto-oncogene protein 75.7 12 0.0004 23.1 6.5 38 75-112 25-62 (63)
16 1ci6_A Transcription factor AT 74.9 12 0.00042 23.2 6.2 36 75-110 25-60 (63)
17 3s4r_A Vimentin; alpha-helix, 72.3 19 0.00064 24.0 8.6 79 16-110 15-93 (93)
18 1g6u_A Domain swapped dimer; d 70.6 9.3 0.00032 22.7 4.5 27 87-113 20-46 (48)
19 3l4q_C Phosphatidylinositol 3- 69.2 33 0.0011 25.6 8.8 101 10-112 24-142 (170)
20 1bh9_A TAFII18; histone fold, 66.3 3.7 0.00013 24.3 2.2 15 104-119 4-18 (45)
21 1jnm_A Proto-oncogene C-JUN; B 66.2 9.6 0.00033 23.4 4.2 37 75-111 24-60 (62)
22 1gmj_A ATPase inhibitor; coile 65.7 24 0.00083 23.6 6.4 29 80-108 51-79 (84)
23 2l5g_B Putative uncharacterize 64.1 20 0.00068 21.2 5.1 29 80-108 9-37 (42)
24 3sja_C Golgi to ER traffic pro 62.8 7.3 0.00025 25.0 3.2 30 13-42 28-57 (65)
25 3d5a_X RF1, peptide chain rele 61.4 44 0.0015 27.6 8.5 39 9-47 24-62 (354)
26 1zbt_A RF-1, peptide chain rel 60.8 26 0.00089 29.1 7.1 39 9-47 38-76 (371)
27 1zxa_A CGMP-dependent protein 60.7 17 0.00059 23.3 4.7 40 72-111 10-49 (67)
28 1gqe_A Release factor 2, RF2; 57.9 23 0.0008 29.3 6.3 39 9-47 46-84 (365)
29 1kd8_B GABH BLL, GCN4 acid bas 56.2 25 0.00087 20.0 4.4 28 83-110 4-31 (36)
30 1m1j_C Fibrinogen gamma chain; 55.0 63 0.0021 27.0 8.5 29 82-110 100-128 (409)
31 2wuj_A Septum site-determining 54.6 19 0.00065 21.8 4.0 42 65-110 16-57 (57)
32 3viq_B Mating-type switching p 54.2 15 0.0005 24.7 3.7 28 83-110 4-31 (85)
33 2y7c_A Type-1 restriction enzy 54.0 42 0.0014 26.1 6.9 52 62-113 365-416 (464)
34 2wt7_B Transcription factor MA 53.8 47 0.0016 22.3 6.8 38 75-112 50-87 (90)
35 3q0x_A Centriole protein; cent 53.5 54 0.0019 25.4 7.4 48 63-110 154-201 (228)
36 2oqq_A Transcription factor HY 53.4 32 0.0011 20.2 6.2 35 76-110 6-40 (42)
37 3na7_A HP0958; flagellar bioge 53.4 71 0.0024 24.2 8.2 27 18-44 40-66 (256)
38 2fxo_A Myosin heavy chain, car 52.4 45 0.0015 23.1 6.2 19 92-110 102-120 (129)
39 2xi5_A RNA polymerase L, L-pro 52.3 6.1 0.00021 30.1 1.7 15 103-117 162-176 (184)
40 2lw1_A ABC transporter ATP-bin 52.1 28 0.00095 22.6 4.8 19 77-95 26-44 (89)
41 3okg_A Restriction endonucleas 51.0 21 0.00071 27.5 4.7 52 62-113 355-406 (412)
42 1uo4_A General control protein 49.8 26 0.00089 19.8 3.7 28 83-110 4-31 (34)
43 1t3j_A Mitofusin 1; coiled coi 49.3 52 0.0018 22.4 5.9 39 76-115 43-81 (96)
44 2pnv_A Small conductance calci 48.9 21 0.00073 20.9 3.4 27 19-45 11-37 (43)
45 3oa7_A Head morphogenesis prot 48.8 67 0.0023 24.7 7.1 46 71-116 28-73 (206)
46 1gmj_A ATPase inhibitor; coile 48.7 57 0.002 21.7 6.5 37 74-110 38-74 (84)
47 2ocy_A RAB guanine nucleotide 48.3 59 0.002 23.8 6.5 40 72-111 107-146 (154)
48 2e7s_A RAB guanine nucleotide 48.1 15 0.00053 26.5 3.2 39 73-111 96-134 (135)
49 2dgc_A Protein (GCN4); basic d 47.9 32 0.0011 21.3 4.4 29 82-110 32-60 (63)
50 1l8d_A DNA double-strand break 47.5 57 0.0019 21.4 6.5 36 76-111 6-41 (112)
51 3c3f_A Alpha/beta peptide with 47.5 36 0.0012 19.1 4.4 28 83-110 4-31 (34)
52 3sjb_C Golgi to ER traffic pro 47.2 16 0.00055 24.9 3.0 30 13-42 45-74 (93)
53 3okg_A Restriction endonucleas 46.2 71 0.0024 24.5 7.1 55 62-116 164-219 (412)
54 1hjb_A Ccaat/enhancer binding 46.1 62 0.0021 21.4 6.2 35 78-112 41-75 (87)
55 2wq1_A General control protein 46.0 38 0.0013 18.9 5.0 28 83-110 3-30 (33)
56 3lss_A Seryl-tRNA synthetase; 45.7 1.4E+02 0.0048 25.4 9.7 23 82-104 113-135 (484)
57 4dzn_A Coiled-coil peptide CC- 45.4 37 0.0013 18.6 4.6 27 83-109 5-31 (33)
58 2fxo_A Myosin heavy chain, car 44.9 32 0.0011 23.8 4.4 27 80-106 97-123 (129)
59 3oja_A Leucine-rich immune mol 44.2 1.2E+02 0.0042 24.3 10.4 34 75-108 444-477 (487)
60 4abx_A DNA repair protein RECN 43.6 86 0.0029 22.3 7.8 46 72-118 90-145 (175)
61 3gpv_A Transcriptional regulat 42.9 45 0.0016 23.3 5.1 41 70-110 92-132 (148)
62 3m48_A General control protein 42.8 36 0.0012 19.1 3.5 27 84-110 4-30 (33)
63 2y7c_A Type-1 restriction enzy 42.4 81 0.0028 24.4 6.9 52 62-113 152-203 (464)
64 1hjb_A Ccaat/enhancer binding 41.8 55 0.0019 21.7 5.0 39 73-111 43-81 (87)
65 1kd8_A GABH AIV, GCN4 acid bas 41.4 49 0.0017 18.8 4.8 27 84-110 5-31 (36)
66 2oxj_A Hybrid alpha/beta pepti 41.1 48 0.0016 18.7 4.4 28 83-110 4-31 (34)
67 2bni_A General control protein 41.0 38 0.0013 19.1 3.4 28 83-110 4-31 (34)
68 3onj_A T-snare VTI1; helix, HA 40.9 19 0.00066 23.9 2.7 28 19-46 67-95 (97)
69 3mq9_A Bone marrow stromal ant 40.4 72 0.0025 25.6 6.5 37 73-109 429-465 (471)
70 1uii_A Geminin; human, DNA rep 40.3 38 0.0013 22.6 4.0 32 19-50 48-79 (83)
71 3c3g_A Alpha/beta peptide with 39.2 51 0.0017 18.4 5.0 28 83-110 3-30 (33)
72 3gp4_A Transcriptional regulat 38.5 88 0.003 21.7 6.0 39 70-108 78-116 (142)
73 2yy0_A C-MYC-binding protein; 38.4 64 0.0022 19.4 4.8 35 70-104 16-50 (53)
74 3mq7_A Bone marrow stromal ant 38.2 65 0.0022 22.9 5.2 29 81-109 72-100 (121)
75 2zxx_A Geminin; coiled-coil, c 37.7 31 0.001 22.8 3.2 32 19-50 36-67 (79)
76 1fxk_C Protein (prefoldin); ar 37.4 85 0.0029 21.2 5.7 33 77-109 85-117 (133)
77 3twe_A Alpha4H; unknown functi 36.5 48 0.0017 17.4 3.6 21 91-111 5-25 (27)
78 1gu4_A CAAT/enhancer binding p 35.6 68 0.0023 20.8 4.6 33 78-110 41-73 (78)
79 3ghg_C Fibrinogen gamma chain; 35.5 1.7E+02 0.006 24.4 8.2 90 22-111 29-129 (411)
80 4fla_A Regulation of nuclear P 35.2 61 0.0021 23.4 4.8 23 71-93 77-99 (152)
81 3v86_A De novo design helix; c 35.0 52 0.0018 17.3 3.4 23 85-107 5-27 (27)
82 3nmd_A CGMP dependent protein 34.9 38 0.0013 22.0 3.3 31 79-109 39-69 (72)
83 3u06_A Protein claret segregat 34.8 78 0.0027 26.1 6.0 35 78-112 8-42 (412)
84 2zdi_C Prefoldin subunit alpha 34.6 94 0.0032 21.6 5.7 41 75-115 107-148 (151)
85 3hnw_A Uncharacterized protein 34.6 95 0.0032 21.9 5.7 9 22-30 37-45 (138)
86 2wg5_A General control protein 34.4 36 0.0012 23.0 3.3 37 23-65 6-43 (109)
87 3vlc_E Golgi to ER traffic pro 34.2 16 0.00054 25.0 1.4 30 13-42 52-81 (94)
88 2dfs_A Myosin-5A; myosin-V, in 33.7 2.9E+02 0.01 25.6 11.4 18 76-93 1026-1043(1080)
89 4etp_A Kinesin-like protein KA 33.5 98 0.0033 25.3 6.3 32 79-110 9-40 (403)
90 2lw1_A ABC transporter ATP-bin 33.1 77 0.0026 20.4 4.6 25 80-104 22-46 (89)
91 1r8e_A Multidrug-efflux transp 32.9 1.3E+02 0.0044 22.1 6.5 38 72-109 78-115 (278)
92 2v71_A Nuclear distribution pr 32.8 1.6E+02 0.0053 22.2 8.8 72 22-111 15-87 (189)
93 1vcs_A Vesicle transport throu 31.8 40 0.0014 22.5 3.1 27 20-46 70-96 (102)
94 3pp5_A BRK1, protein brick1; t 31.1 54 0.0018 21.3 3.5 29 16-44 36-65 (73)
95 3hnw_A Uncharacterized protein 30.7 74 0.0025 22.5 4.6 30 78-107 108-137 (138)
96 2l5g_B Putative uncharacterize 30.6 84 0.0029 18.4 4.9 34 15-48 7-40 (42)
97 3okq_A BUD site selection prot 30.5 1.4E+02 0.0047 21.7 6.0 43 72-114 6-48 (141)
98 2ynz_A General control protein 30.3 63 0.0022 23.8 4.2 29 84-112 3-31 (154)
99 3ghg_A Fibrinogen alpha chain; 30.2 2E+02 0.0068 25.2 7.9 26 87-112 131-156 (562)
100 2ihr_1 Peptide chain release f 30.2 15 0.00052 30.5 0.9 43 9-51 38-80 (365)
101 2r2v_A GCN4 leucine zipper; co 30.1 77 0.0026 17.8 5.0 28 83-110 4-31 (34)
102 1lrz_A FEMA, factor essential 30.0 1.6E+02 0.0055 23.5 7.0 29 66-94 240-268 (426)
103 3da5_A Argonaute; PAZ domain, 29.6 21 0.00074 25.2 1.5 16 101-116 79-94 (128)
104 3a2a_A Voltage-gated hydrogen 28.5 1.1E+02 0.0037 19.0 5.8 42 70-111 8-49 (58)
105 1jcd_A Major outer membrane li 28.4 1E+02 0.0035 18.6 5.6 29 83-111 7-35 (52)
106 1lwu_C Fibrinogen gamma chain; 27.8 1.3E+02 0.0044 24.3 6.0 31 78-108 17-47 (323)
107 1rq0_A RF-1, peptide chain rel 27.8 1.5E+02 0.0052 24.2 6.5 35 12-51 18-52 (342)
108 1yf2_A Type I restriction-modi 27.5 1.6E+02 0.0054 22.3 6.3 48 62-113 368-415 (425)
109 3vkg_A Dynein heavy chain, cyt 27.4 3.7E+02 0.013 28.4 10.3 42 69-110 2010-2051(3245)
110 1q08_A Zn(II)-responsive regul 27.4 1.2E+02 0.004 19.0 7.0 33 71-103 37-69 (99)
111 2e62_A Protein AT5G25060; CWF2 26.4 1E+02 0.0036 19.3 4.1 21 96-116 40-60 (61)
112 4dyl_A Tyrosine-protein kinase 26.3 1.7E+02 0.0058 23.5 6.5 83 17-106 309-392 (406)
113 1t2k_D Cyclic-AMP-dependent tr 26.2 1.1E+02 0.0037 18.3 5.3 29 82-110 24-52 (61)
114 2xdj_A Uncharacterized protein 26.0 1.4E+02 0.0048 19.4 6.6 39 76-114 23-64 (83)
115 3htk_A Structural maintenance 26.0 1E+02 0.0036 18.0 6.8 31 79-109 25-55 (60)
116 1x8y_A Lamin A/C; structural p 25.8 1.4E+02 0.0047 19.3 5.5 34 72-105 20-53 (86)
117 1go4_E MAD1 (mitotic arrest de 25.4 1.6E+02 0.0055 20.0 5.3 31 81-111 13-43 (100)
118 3oja_B Anopheles plasmodium-re 24.9 1.9E+02 0.0066 23.6 6.7 40 71-110 528-567 (597)
119 2ocy_A RAB guanine nucleotide 24.6 2E+02 0.007 20.9 10.5 36 15-50 11-46 (154)
120 1nkp_B MAX protein, MYC proto- 24.6 1.4E+02 0.0046 18.8 7.0 45 68-112 35-79 (83)
121 2r32_A GCN4-PII/tumor necrosis 24.4 55 0.0019 24.3 2.9 42 75-116 9-53 (166)
122 1r8d_A Transcription activator 24.4 94 0.0032 20.2 3.9 27 75-101 77-103 (109)
123 3hh0_A Transcriptional regulat 24.3 1.6E+02 0.0054 20.4 5.3 37 71-107 78-114 (146)
124 3trt_A Vimentin; cytoskeleton, 24.2 1.3E+02 0.0045 18.5 6.2 38 73-110 28-65 (77)
125 1zme_C Proline utilization tra 24.0 1E+02 0.0035 18.0 3.8 14 85-98 49-62 (70)
126 3p8c_E Probable protein brick1 23.6 1.2E+02 0.0041 19.7 4.2 29 16-44 36-65 (75)
127 1ezj_A Nucleocapsid phosphopro 23.6 1.3E+02 0.0045 20.9 4.6 30 84-114 63-92 (115)
128 1nlw_A MAD protein, MAX dimeri 23.3 1.5E+02 0.0051 18.9 6.0 29 82-110 49-77 (80)
129 2v71_A Nuclear distribution pr 23.2 1.6E+02 0.0055 22.1 5.4 37 73-109 42-78 (189)
130 3u1c_A Tropomyosin alpha-1 cha 23.2 1.7E+02 0.0057 19.4 9.1 70 26-110 4-74 (101)
131 3hhm_B NISH2 P85alpha; PI3KCA, 23.0 2E+02 0.0067 23.5 6.3 99 12-112 135-251 (373)
132 3iv1_A Tumor susceptibility ge 23.0 1.6E+02 0.0056 19.2 6.5 32 76-107 42-73 (78)
133 3cqx_C BAG family molecular ch 22.7 36 0.0012 23.0 1.5 13 6-18 59-71 (88)
134 1uii_A Geminin; human, DNA rep 22.2 1.7E+02 0.0059 19.3 4.8 25 84-108 50-74 (83)
135 1jnm_A Proto-oncogene C-JUN; B 22.1 1.4E+02 0.0047 17.9 5.3 30 81-110 23-52 (62)
136 1q1v_A DEK protein; winged-hel 21.8 56 0.0019 20.6 2.3 17 102-120 34-51 (70)
137 4e61_A Protein BIM1; EB1-like 21.8 1.9E+02 0.0065 19.9 5.2 24 84-107 15-38 (106)
138 1yf2_A Type I restriction-modi 21.7 2.6E+02 0.0089 21.0 7.1 51 62-112 158-208 (425)
139 3viq_B Mating-type switching p 21.6 1.1E+02 0.0037 20.4 3.7 26 76-101 4-29 (85)
140 3tnu_A Keratin, type I cytoske 21.4 2E+02 0.0069 19.6 9.3 31 19-49 40-70 (131)
141 2pjw_V Vacuolar protein sortin 21.2 75 0.0026 21.2 2.9 22 6-27 1-22 (91)
142 1gk4_A Vimentin; intermediate 21.2 1.7E+02 0.0058 18.6 5.7 33 73-105 19-51 (84)
143 2wt7_A Proto-oncogene protein 21.1 1.5E+02 0.005 17.9 5.3 26 83-108 26-51 (63)
144 2ve7_A Kinetochore protein HEC 21.0 2.4E+02 0.0082 22.2 6.3 28 81-108 186-213 (315)
145 3rrk_A V-type ATPase 116 kDa s 20.8 1.2E+02 0.0041 23.6 4.5 49 66-114 210-260 (357)
146 3mq9_A Bone marrow stromal ant 20.8 1.8E+02 0.0061 23.3 5.6 29 79-107 442-470 (471)
147 2no2_A HIP-I, huntingtin-inter 20.7 2E+02 0.0069 19.4 6.4 14 78-91 27-40 (107)
148 3m91_A Proteasome-associated A 20.6 1.5E+02 0.005 17.7 5.7 34 77-110 13-46 (51)
No 1
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=99.90 E-value=1.3e-22 Score=142.14 Aligned_cols=110 Identities=14% Similarity=0.228 Sum_probs=107.3
Q ss_pred cccHHHHHHhHHHHhHHhhHHHHHHHHHHHHHhhhhhhhhhhhh-hcCCCccceeeecceeeecChhHHHHHHHHHHHHH
Q 040215 7 VVTWEDQQNINKFSKLNNRFHELEDEIKFAKETNDNLEDAGNEL-ILTDEDIVRFQIGEVFAHVPREEVEIRIEEMKEVN 85 (123)
Q Consensus 7 eVt~EDQqkIN~FsrLn~r~~~l~~~l~~~k~~le~L~Da~~El-L~ddd~~i~ykiGe~Fv~~~~~~a~e~LE~~~e~~ 85 (123)
++..++|++||+|+++++++..+..++..++.++..++++.+|| ++++|..|++.||.|||+.+.++|...|+..++.+
T Consensus 3 ~~~~e~Q~~i~~~~~l~~~~~~l~~q~~~l~~~~~e~~~~~~eL~~l~~d~~vy~~iG~vfv~~~~~ea~~~L~~~~e~i 82 (117)
T 2zqm_A 3 NIPPQVQAMLGQLESYQQQLQLVVQQKQKVQLELTEAKKALDEIESLPDDAVVYKTVGTLIVKTTKDKAVAELKEKIETL 82 (117)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCTTCCEEEEETTEEEEECHHHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCcHhHHHhhHHHhhccHHHHHHHHHHHHHHH
Confidence 57889999999999999999999999999999999999999999 88888889999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 040215 86 SKTLEKLEKEKETVLAQMNELKKILYGKFRD 116 (123)
Q Consensus 86 ~~ei~~le~~~~~i~~~m~eLK~~LYaKFG~ 116 (123)
+.+|+.|+.++..+..+|.+||..||++||.
T Consensus 83 e~~i~~le~~~~~l~~~l~~lk~~l~~~~~~ 113 (117)
T 2zqm_A 83 EVRLNALERQEKKLNEKLKELTAQIQSALRP 113 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 9999999999999999999999999999986
No 2
>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B
Probab=99.90 E-value=9.6e-23 Score=141.18 Aligned_cols=104 Identities=16% Similarity=0.271 Sum_probs=101.7
Q ss_pred HHHHhHHHHhHHhhHHHHHHHHHHHHHhhhhhhhhhhhh-hcCCCccceeeecceeeecChhHHHHHHHHHHHHHHHHHH
Q 040215 12 DQQNINKFSKLNNRFHELEDEIKFAKETNDNLEDAGNEL-ILTDEDIVRFQIGEVFAHVPREEVEIRIEEMKEVNSKTLE 90 (123)
Q Consensus 12 DQqkIN~FsrLn~r~~~l~~~l~~~k~~le~L~Da~~El-L~ddd~~i~ykiGe~Fv~~~~~~a~e~LE~~~e~~~~ei~ 90 (123)
=|+.||+|+++++++..+..++..++.++..++++.+|| ++++|.+|++.||.|||+.+.++|...|+..++.++.+|+
T Consensus 3 ~Q~~i~~f~~lq~~~~~l~~q~~~l~~~~~e~~~~~~EL~~l~~d~~vy~~iG~vfv~~~~~e~~~~L~~~~e~i~~~i~ 82 (107)
T 1fxk_A 3 VQHQLAQFQQLQQQAQAISVQKQTVEMQINETQKALEELSRAADDAEVYKSSGNILIRVAKDELTEELQEKLETLQLREK 82 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCTTCCEEEEETTEEEEECHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCchHHHHHhHHHHhccHHHHHHHHHHHHHHHHHHHH
Confidence 389999999999999999999999999999999999999 9898888999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcC
Q 040215 91 KLEKEKETVLAQMNELKKILYGKFR 115 (123)
Q Consensus 91 ~le~~~~~i~~~m~eLK~~LYaKFG 115 (123)
.|+.++..+..+|.+||..||++||
T Consensus 83 ~le~~~~~~~~~l~~lk~~l~~~~~ 107 (107)
T 1fxk_A 83 TIERQEERVMKKLQEMQVNIQEAMK 107 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 9999999999999999999999996
No 3
>1fxk_C Protein (prefoldin); archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1
Probab=97.91 E-value=0.00043 Score=48.94 Aligned_cols=98 Identities=17% Similarity=0.196 Sum_probs=71.4
Q ss_pred HHHhHHHHhHHhhHHHHHHHHHHHHHhhhhhhhhhhhh--hcC-CC--------------------ccceeeecc-eeee
Q 040215 13 QQNINKFSKLNNRFHELEDEIKFAKETNDNLEDAGNEL--ILT-DE--------------------DIVRFQIGE-VFAH 68 (123)
Q Consensus 13 QqkIN~FsrLn~r~~~l~~~l~~~k~~le~L~Da~~El--L~d-dd--------------------~~i~ykiGe-~Fv~ 68 (123)
|+....+..+-.....+...+..++..+..+..+.+.| |.. ++ +.|..-||. +||.
T Consensus 4 ~~l~~~~q~l~~~~~~l~~~~~~l~~~i~e~~~~~e~l~~l~~~~~~~~lvplg~~~yv~a~i~~~~~V~v~lG~g~~vE 83 (133)
T 1fxk_C 4 AEIVAQLNIYQSQVELIQQQMEAVRATISELEILEKTLSDIQGKDGSETLVPVGAGSFIKAELKDTSEVIMSVGAGVAIK 83 (133)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCTTCEEEEEEETTEEEEEECCSTTEEEEEEETTEEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCeEEEEcCCCcEEEEEECCCCEEEEEcCCCEEEE
Confidence 44555555555555666666666655555555555555 321 11 125566994 9999
Q ss_pred cChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040215 69 VPREEVEIRIEEMKEVNSKTLEKLEKEKETVLAQMNELKKIL 110 (123)
Q Consensus 69 ~~~~~a~e~LE~~~e~~~~ei~~le~~~~~i~~~m~eLK~~L 110 (123)
.+.++|.+.|++..+.++..++.++..+..+..++..+-..|
T Consensus 84 ~~~~eA~~~l~~r~~~l~~~~~~l~~~l~~l~~~i~~~~~~l 125 (133)
T 1fxk_C 84 KNFEDAMESIKSQKNELESTLQKMGENLRAITDIMMKLSPQA 125 (133)
T ss_dssp EEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred eeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999998887665
No 4
>2zdi_C Prefoldin subunit alpha; chaperone, cytoplasm; 3.00A {Pyrococcus horikoshii}
Probab=97.88 E-value=0.00028 Score=51.30 Aligned_cols=101 Identities=11% Similarity=0.134 Sum_probs=79.7
Q ss_pred HHHHHHhHHHHhHHhhHHHHHHHHHHH---HHhhhhhhhhhhhh-hcC-CCccceeeec---------------------
Q 040215 10 WEDQQNINKFSKLNNRFHELEDEIKFA---KETNDNLEDAGNEL-ILT-DEDIVRFQIG--------------------- 63 (123)
Q Consensus 10 ~EDQqkIN~FsrLn~r~~~l~~~l~~~---k~~le~L~Da~~El-L~d-dd~~i~ykiG--------------------- 63 (123)
.+=|+....+..+-.....+...+..+ ...+..+..+-+.| ... ++..+++.+|
T Consensus 9 ~~l~ql~~~~qql~~~~~~l~~~~~~L~~a~~~~~e~~~~l~~l~~l~~~~~~ilvplg~~~yv~g~i~~~~~V~v~lG~ 88 (151)
T 2zdi_C 9 KELEKLAYEYQVLQAQAQILAQNLELLNLAKAEVQTVRETLENLKKIEEEKPEILVPIGAGSFLKGVIVDKNNAIVSVGS 88 (151)
T ss_dssp THHHHHHHHHHHHTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCSSCEEEEECSSSCEEEEECSCTTEEEEEEET
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCceEEEEcCCCeEEEEEECCCCEEEEEeCC
Confidence 344566666677777777777777777 77777777777777 444 4444666655
Q ss_pred ceeeecChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040215 64 EVFAHVPREEVEIRIEEMKEVNSKTLEKLEKEKETVLAQMNELKKIL 110 (123)
Q Consensus 64 e~Fv~~~~~~a~e~LE~~~e~~~~ei~~le~~~~~i~~~m~eLK~~L 110 (123)
.+||..+.++|.+.|++..+.+...++.++..+..+..++..+...|
T Consensus 89 g~~vE~~~~eA~~~l~~ri~~l~~~l~~l~~~l~~l~~~i~~~~~~l 135 (151)
T 2zdi_C 89 GYAVERSIDEAISFLEKRLKEYDEAIKKTQGALAELEKRIGEVARKA 135 (151)
T ss_dssp TEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHH
T ss_pred CeEEEecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 69999999999999999999999999999999999999988887765
No 5
>3aei_A Prefoldin beta subunit 2; double helix, coiled coil, chaperone; 1.70A {Thermococcus SP}
Probab=94.69 E-value=0.58 Score=31.85 Aligned_cols=83 Identities=17% Similarity=0.322 Sum_probs=61.4
Q ss_pred HHHHHHHHHHHHHhhhhhhhhhhhhhcCCCccceeeecceeeecChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040215 26 FHELEDEIKFAKETNDNLEDAGNELILTDEDIVRFQIGEVFAHVPREEVEIRIEEMKEVNSKTLEKLEKEKETVLAQMNE 105 (123)
Q Consensus 26 ~~~l~~~l~~~k~~le~L~Da~~ElL~ddd~~i~ykiGe~Fv~~~~~~a~e~LE~~~e~~~~ei~~le~~~~~i~~~m~e 105 (123)
...|...++-+-++++|-+-..+-+ -.+-.+.--+.|..|.++.++|-+++|.+--....+|++|..+-.+|-.+++.
T Consensus 16 ir~lr~~~elkmkeleyaegiit~~--k~er~~yraf~dllveitkdeaiehier~rl~ykreie~l~~~ekeime~ls~ 93 (99)
T 3aei_A 16 IRTLRQSLELKMKELEYAEGIITSL--KSERRIYRAFSDLLVEITKDEAIEHIERSRLVYKREIEKLKKREKEIMEELSK 93 (99)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTSS--CSCCCEEEEETTEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4456666666777777755544333 11223444589999999999999999999999999999999999999999988
Q ss_pred HHHHH
Q 040215 106 LKKIL 110 (123)
Q Consensus 106 LK~~L 110 (123)
|.+-|
T Consensus 94 l~~pl 98 (99)
T 3aei_A 94 LRAPL 98 (99)
T ss_dssp C----
T ss_pred hccCC
Confidence 87543
No 6
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=88.34 E-value=0.87 Score=30.62 Aligned_cols=88 Identities=16% Similarity=0.145 Sum_probs=38.2
Q ss_pred hHHHHhHHhhHHHHHHHHHHHHHhhhhhhhhhhh--h-hcCCCccceeeecceeeecChhHHHHHHHHHHHHHHHHHHHH
Q 040215 16 INKFSKLNNRFHELEDEIKFAKETNDNLEDAGNE--L-ILTDEDIVRFQIGEVFAHVPREEVEIRIEEMKEVNSKTLEKL 92 (123)
Q Consensus 16 IN~FsrLn~r~~~l~~~l~~~k~~le~L~Da~~E--l-L~ddd~~i~ykiGe~Fv~~~~~~a~e~LE~~~e~~~~ei~~l 92 (123)
-+++..+.+++..++.++.....-++.|+.+.++ + -.-++.-|.--+++ +.-..+.-.+.++...+.+.+.+..+
T Consensus 19 ~~~~~~l~~q~~~l~~~~~e~~~~~~eL~~l~~d~~vy~~iG~vfv~~~~~e--a~~~L~~~~e~ie~~i~~le~~~~~l 96 (117)
T 2zqm_A 19 QQQLQLVVQQKQKVQLELTEAKKALDEIESLPDDAVVYKTVGTLIVKTTKDK--AVAELKEKIETLEVRLNALERQEKKL 96 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCTTCCEEEEETTEEEEECHHH--HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCcHhHHHhhHHHhhccHHH--HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445555555555554444433333333221 3 11121112222222 33334444555555555555555555
Q ss_pred HHHHHHHHHHHHH
Q 040215 93 EKEKETVLAQMNE 105 (123)
Q Consensus 93 e~~~~~i~~~m~e 105 (123)
+.++.+++..+.+
T Consensus 97 ~~~l~~lk~~l~~ 109 (117)
T 2zqm_A 97 NEKLKELTAQIQS 109 (117)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 5555555555443
No 7
>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B
Probab=86.68 E-value=5 Score=26.35 Aligned_cols=89 Identities=11% Similarity=0.127 Sum_probs=44.5
Q ss_pred HHhHHHHhHHhhHHHHHHHHHHHHHhhhhhhhhhhh--h-hcCCCccceeeecceeeecChhHHHHHHHHHHHHHHHHHH
Q 040215 14 QNINKFSKLNNRFHELEDEIKFAKETNDNLEDAGNE--L-ILTDEDIVRFQIGEVFAHVPREEVEIRIEEMKEVNSKTLE 90 (123)
Q Consensus 14 qkIN~FsrLn~r~~~l~~~l~~~k~~le~L~Da~~E--l-L~ddd~~i~ykiGe~Fv~~~~~~a~e~LE~~~e~~~~ei~ 90 (123)
+.-++...+.+++..++.++.....-++.|+.+.++ + -.-++.-|.--.++ +.-..+.-.+.++...+.+++.+.
T Consensus 12 ~lq~~~~~l~~q~~~l~~~~~e~~~~~~EL~~l~~d~~vy~~iG~vfv~~~~~e--~~~~L~~~~e~i~~~i~~le~~~~ 89 (107)
T 1fxk_A 12 QLQQQAQAISVQKQTVEMQINETQKALEELSRAADDAEVYKSSGNILIRVAKDE--LTEELQEKLETLQLREKTIERQEE 89 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCTTCCEEEEETTEEEEECHHH--HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCchHHHHHhHHHHhccHHH--HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334455555556666665555555444444433322 3 11221223333333 334445555666666666666666
Q ss_pred HHHHHHHHHHHHHH
Q 040215 91 KLEKEKETVLAQMN 104 (123)
Q Consensus 91 ~le~~~~~i~~~m~ 104 (123)
.++.++.+++..+.
T Consensus 90 ~~~~~l~~lk~~l~ 103 (107)
T 1fxk_A 90 RVMKKLQEMQVNIQ 103 (107)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 66666666665543
No 8
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=85.69 E-value=2.2 Score=26.11 Aligned_cols=31 Identities=19% Similarity=0.262 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040215 80 EMKEVNSKTLEKLEKEKETVLAQMNELKKIL 110 (123)
Q Consensus 80 ~~~e~~~~ei~~le~~~~~i~~~m~eLK~~L 110 (123)
.+.+.+..+.+.|..++..+..+..+|++.|
T Consensus 19 ~d~eaLk~E~~eLk~k~~~L~~~~~el~~~l 49 (53)
T 2yy0_A 19 PEIELLRLELAEMKEKYEAIVEENKKLKAKL 49 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456777788888888888888888888766
No 9
>1ik9_A DNA repair protein XRCC4; DNA END joining, double-strand break repair, V(D)J recombination, protein-protein complex, coiled coil; HET: DNA; 2.30A {Homo sapiens} SCOP: b.59.1.1 h.1.11.1 PDB: 3ii6_A* 1fu1_A* 3rwr_A*
Probab=85.21 E-value=5.2 Score=30.65 Aligned_cols=58 Identities=19% Similarity=0.276 Sum_probs=38.1
Q ss_pred cceeeecceeeec--ChhHH------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 040215 57 IVRFQIGEVFAHV--PREEV------------------EIRIEEMKEVNSKTLEKLEKEKETVLAQMNELKKILYGKF 114 (123)
Q Consensus 57 ~i~ykiGe~Fv~~--~~~~a------------------~e~LE~~~e~~~~ei~~le~~~~~i~~~m~eLK~~LYaKF 114 (123)
.|-+++|..=+.- +..++ ...|.+....++..++.+.++++++-..-.++=..||+||
T Consensus 103 ~I~~rLGsi~L~~~~d~~e~i~elfd~~~~~~~~~~~~~~~L~~e~~~l~~~~~~l~~qlE~~v~~K~~~E~~L~~KF 180 (213)
T 1ik9_A 103 DVSFRLGSFNLEKVENPAEVIRELIAYALDTIAENQAKNEHLQKENERLLRDWNDVQGRFEKAVSAKEALETDLYKRF 180 (213)
T ss_dssp SCEEEEEEEECEECSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ceEEEEEEEEeecCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4677778766663 33444 2334444455666667777777777777777778899999
No 10
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=85.20 E-value=6.4 Score=26.21 Aligned_cols=39 Identities=15% Similarity=0.126 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040215 73 EVEIRIEEMKEVNSKTLEKLEKEKETVLAQMNELKKILY 111 (123)
Q Consensus 73 ~a~e~LE~~~e~~~~ei~~le~~~~~i~~~m~eLK~~LY 111 (123)
......+.....+..++..+..++..+..++..|...+-
T Consensus 64 ~~i~~~~~~l~~l~~~i~~l~~~i~~l~~~~~~l~~~~~ 102 (112)
T 1l8d_A 64 ELLSKYHLDLNNSKNTLAKLIDRKSELERELRRIDMEIK 102 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445566677777788888888888888888888877644
No 11
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=83.43 E-value=3.4 Score=25.35 Aligned_cols=37 Identities=22% Similarity=0.218 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040215 75 EIRIEEMKEVNSKTLEKLEKEKETVLAQMNELKKILY 111 (123)
Q Consensus 75 ~e~LE~~~e~~~~ei~~le~~~~~i~~~m~eLK~~LY 111 (123)
...|+...+.+..+...|..++..+..++..||..|-
T Consensus 24 ~~~Le~~~~~L~~~n~~L~~~i~~L~~e~~~Lk~~ll 60 (61)
T 1t2k_D 24 VQSLEKKAEDLSSLNGQLQSEVTLLRNEVAQLKQLLL 60 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 5667888888888888888999999999999988774
No 12
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=76.92 E-value=15 Score=25.21 Aligned_cols=80 Identities=20% Similarity=0.150 Sum_probs=48.3
Q ss_pred HHHhHHhhHHHHHHHHHHHHHhhhhhhhhhhhh-hcCCCccceeeecceeeecChhHHHHHHHHHHHHHHHHHHHHHHHH
Q 040215 18 KFSKLNNRFHELEDEIKFAKETNDNLEDAGNEL-ILTDEDIVRFQIGEVFAHVPREEVEIRIEEMKEVNSKTLEKLEKEK 96 (123)
Q Consensus 18 ~FsrLn~r~~~l~~~l~~~k~~le~L~Da~~El-L~ddd~~i~ykiGe~Fv~~~~~~a~e~LE~~~e~~~~ei~~le~~~ 96 (123)
....|-.++..|+.+...+.++++.|+-=-.=. |-.|-++...||=- |..=|...|.+......++++++++.|...+
T Consensus 13 ~~~~lr~ei~~Le~E~~rLr~~~~~LE~~Le~~~l~Gd~~~~~TKVlH-~~~NPa~~a~~~~~~~~e~Lq~E~erLr~~v 91 (100)
T 1go4_E 13 EADTLRLKVEELEGERSRLEEEKRMLEAQLERRALQGDYDQSRTKVLH-MSLNPTSVARQRLREDHSQLQAECERLRGLL 91 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCSCCCTTTEEEEE-ESSCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCccCeeee-ecCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666667777777777777766654322111 32332334455432 5555667777777888888888888877766
Q ss_pred HH
Q 040215 97 ET 98 (123)
Q Consensus 97 ~~ 98 (123)
..
T Consensus 92 ~~ 93 (100)
T 1go4_E 92 RA 93 (100)
T ss_dssp TT
T ss_pred HH
Confidence 43
No 13
>2pnv_A Small conductance calcium-activated potassium channel protein 2; leucine zipper, SKCA channel, membrane protein; 2.10A {Rattus norvegicus}
Probab=76.77 E-value=4.9 Score=23.79 Aligned_cols=33 Identities=21% Similarity=0.294 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040215 73 EVEIRIEEMKEVNSKTLEKLEKEKETVLAQMNE 105 (123)
Q Consensus 73 ~a~e~LE~~~e~~~~ei~~le~~~~~i~~~m~e 105 (123)
+...-+....+.++++|..|+.+++.+...+..
T Consensus 9 dlvsel~~r~e~LE~Ri~~LE~KLd~L~~~l~a 41 (43)
T 2pnv_A 9 DMISDLNERSEDFEKRIVTLETKLETLIGSIHA 41 (43)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHc
Confidence 344556666777777777777777777766553
No 14
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=75.88 E-value=13 Score=24.19 Aligned_cols=29 Identities=17% Similarity=0.161 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040215 82 KEVNSKTLEKLEKEKETVLAQMNELKKIL 110 (123)
Q Consensus 82 ~e~~~~ei~~le~~~~~i~~~m~eLK~~L 110 (123)
....+..|..++.++.+.+..+.+|+.+|
T Consensus 35 Lr~kd~~I~eLEk~L~ekd~eI~~LqseL 63 (72)
T 3nmd_A 35 LRQRDALIDELELELDQKDELIQMLQNEL 63 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556789999999999999999999887
No 15
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=75.69 E-value=12 Score=23.15 Aligned_cols=38 Identities=16% Similarity=0.167 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040215 75 EIRIEEMKEVNSKTLEKLEKEKETVLAQMNELKKILYG 112 (123)
Q Consensus 75 ~e~LE~~~e~~~~ei~~le~~~~~i~~~m~eLK~~LYa 112 (123)
...|+...+.+..+-..|..++..+..+...||..|-+
T Consensus 25 ~~~Le~~v~~L~~~n~~L~~ei~~L~~e~~~Lk~~l~~ 62 (63)
T 2wt7_A 25 TDTLQAETDQLEDEKSALQTEIANLLKEKEKLEFILAA 62 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45677777788888888888888888888888877753
No 16
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=74.88 E-value=12 Score=23.17 Aligned_cols=36 Identities=14% Similarity=0.204 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040215 75 EIRIEEMKEVNSKTLEKLEKEKETVLAQMNELKKIL 110 (123)
Q Consensus 75 ~e~LE~~~e~~~~ei~~le~~~~~i~~~m~eLK~~L 110 (123)
...|+...+.+..+...|..++..+..+..-||..|
T Consensus 25 ~~~le~~~~~L~~~N~~L~~~i~~L~~E~~~Lk~ll 60 (63)
T 1ci6_A 25 QEALTGECKELEKKNEALKERADSLAKEIQYLKDLI 60 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355777777888888888888888888888888665
No 17
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=72.26 E-value=19 Score=24.01 Aligned_cols=79 Identities=18% Similarity=0.352 Sum_probs=47.7
Q ss_pred hHHHHhHHhhHHHHHHHHHHHHHhhhhhhhhhhhhhcCCCccceeeecceeeecChhHHHHHHHHHHHHHHHHHHHHHHH
Q 040215 16 INKFSKLNNRFHELEDEIKFAKETNDNLEDAGNELILTDEDIVRFQIGEVFAHVPREEVEIRIEEMKEVNSKTLEKLEKE 95 (123)
Q Consensus 16 IN~FsrLn~r~~~l~~~l~~~k~~le~L~Da~~ElL~ddd~~i~ykiGe~Fv~~~~~~a~e~LE~~~e~~~~ei~~le~~ 95 (123)
=++||....|..-|+.+-+.+..++..+..-. +-.++..| +.-...|-.....+..+-..++.+
T Consensus 15 NdRlAsyIdKVR~LEqqN~~Le~~i~~l~~~~-----------~~~~~~~y-----e~~i~~Lr~~i~~~~~ek~~l~~e 78 (93)
T 3s4r_A 15 NDRFANLIDKVRFLEQQNKILLAELEQLKGQG-----------KSRLGDLY-----EEEMRELRRQVDQLTNDKARVEVE 78 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc-----------CCCcHHHH-----HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35899999999999988888877766554321 11233322 122333444444555566666666
Q ss_pred HHHHHHHHHHHHHHH
Q 040215 96 KETVLAQMNELKKIL 110 (123)
Q Consensus 96 ~~~i~~~m~eLK~~L 110 (123)
++.+......+|..|
T Consensus 79 ~dnl~~~~~~~k~KL 93 (93)
T 3s4r_A 79 RDNLAEDIMRLREKL 93 (93)
T ss_dssp HHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhhC
Confidence 666777777777654
No 18
>1g6u_A Domain swapped dimer; designed three helix bundle, de novo protein; 1.48A {Synthetic} SCOP: k.9.1.1
Probab=70.56 E-value=9.3 Score=22.70 Aligned_cols=27 Identities=26% Similarity=0.306 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 040215 87 KTLEKLEKEKETVLAQMNELKKILYGK 113 (123)
Q Consensus 87 ~ei~~le~~~~~i~~~m~eLK~~LYaK 113 (123)
.++..|++++..++.++..||+.|.|-
T Consensus 20 eelaaleselqalekklaalksklqal 46 (48)
T 1g6u_A 20 EELAALESELQALEKKLAALKSKLQAL 46 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 467788888888888888888888763
No 19
>3l4q_C Phosphatidylinositol 3-kinase regulatory subunit beta; PI3K, phosphoinositide-3-kinase, influenza virus, NS1; 2.30A {Bos taurus} PDB: 2v1y_B
Probab=69.25 E-value=33 Score=25.57 Aligned_cols=101 Identities=14% Similarity=0.223 Sum_probs=68.2
Q ss_pred HHHHHHhHHHHhHHhhHHHHHHHHHHHHHhhhhhhhhhhhhhcCCCccceeeecc----e-----------eeecChhHH
Q 040215 10 WEDQQNINKFSKLNNRFHELEDEIKFAKETNDNLEDAGNELILTDEDIVRFQIGE----V-----------FAHVPREEV 74 (123)
Q Consensus 10 ~EDQqkIN~FsrLn~r~~~l~~~l~~~k~~le~L~Da~~ElL~ddd~~i~ykiGe----~-----------Fv~~~~~~a 74 (123)
.+=|.+.+.|-+|...++....++..+++-++.+..+.- |.-+-...+=+.+. - =+..+.+..
T Consensus 24 ~qy~~ks~~yd~l~e~y~r~sqEiq~Kr~AieAF~E~ik--~FeeQ~~~qer~~~~~~~~f~~e~~~~E~~~l~~N~e~L 101 (170)
T 3l4q_C 24 QQYQDKSREYDQLYEEYTRTSQELQMKRTAIEAFNETIK--IFEEQGQTQEKSSKEYLERFRREGNEKEMQRILLNSERL 101 (170)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHSSSTTGGGSSSSSCCCSSSTTTTTHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHhHHHHHHHHhhcCHHHHHHHHHHHHHH
Confidence 345788999999999999999999999888887766531 21110001111110 0 133344555
Q ss_pred HHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040215 75 EIRIE---EMKEVNSKTLEKLEKEKETVLAQMNELKKILYG 112 (123)
Q Consensus 75 ~e~LE---~~~e~~~~ei~~le~~~~~i~~~m~eLK~~LYa 112 (123)
..+|. ..+..+...+.......-+++.+|+.||-.|+.
T Consensus 102 ksRL~~l~~sk~~L~e~L~~q~~~~relERemnsLKPeL~q 142 (170)
T 3l4q_C 102 KSRIAEIHESRTKLEQELRAQASDNREIDKRMNSLKPDLMQ 142 (170)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHH
Confidence 55544 477888888888888888999999999988874
No 20
>1bh9_A TAFII18; histone fold, tata binding protein, transcription regulation complex; HET: PMB; 2.60A {Homo sapiens} SCOP: a.22.1.3 PDB: 1bh8_A*
Probab=66.31 E-value=3.7 Score=24.31 Aligned_cols=15 Identities=47% Similarity=0.913 Sum_probs=12.5
Q ss_pred HHHHHHHHHhcCCCCC
Q 040215 104 NELKKILYGKFRDSIN 119 (123)
Q Consensus 104 ~eLK~~LYaKFG~~IN 119 (123)
++|+..+|| ||+.-|
T Consensus 4 ~ei~~mMy~-fGD~~~ 18 (45)
T 1bh9_A 4 KELRCMMYG-FGDDQN 18 (45)
T ss_dssp HHHHHHHHH-TTSCSS
T ss_pred HHHHHHHHH-hCCCCC
Confidence 578899999 999754
No 21
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=66.20 E-value=9.6 Score=23.38 Aligned_cols=37 Identities=19% Similarity=0.198 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040215 75 EIRIEEMKEVNSKTLEKLEKEKETVLAQMNELKKILY 111 (123)
Q Consensus 75 ~e~LE~~~e~~~~ei~~le~~~~~i~~~m~eLK~~LY 111 (123)
...|+...+.+..+-..|..++..+..+...||..|-
T Consensus 24 ~~~Le~~v~~L~~~n~~L~~~v~~L~~e~~~Lk~~l~ 60 (62)
T 1jnm_A 24 IARLEEKVKTLKAQNSELASTANMLREQVAQLKQKVM 60 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456666667777777777777777777777776553
No 22
>1gmj_A ATPase inhibitor; coiled-coil structure, P dependent oligomerization, ATP hydrolysis; 2.2A {Bos taurus} SCOP: h.4.8.1 PDB: 1ohh_H* 1hf9_A
Probab=65.72 E-value=24 Score=23.59 Aligned_cols=29 Identities=28% Similarity=0.374 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040215 80 EMKEVNSKTLEKLEKEKETVLAQMNELKK 108 (123)
Q Consensus 80 ~~~e~~~~ei~~le~~~~~i~~~m~eLK~ 108 (123)
.....-.++|+.++..++..+..+.+||.
T Consensus 51 ~el~~h~~ei~~le~~i~rhk~~i~~l~~ 79 (84)
T 1gmj_A 51 NEISHHAKEIERLQKEIERHKQSIKKLKQ 79 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 33445556666666666666667776664
No 23
>2l5g_B Putative uncharacterized protein NCOR2, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=64.08 E-value=20 Score=21.16 Aligned_cols=29 Identities=7% Similarity=0.190 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040215 80 EMKEVNSKTLEKLEKEKETVLAQMNELKK 108 (123)
Q Consensus 80 ~~~e~~~~ei~~le~~~~~i~~~m~eLK~ 108 (123)
....+++.+|++.++++.+++.++.+|..
T Consensus 9 qkI~kVdrEI~Kte~kI~~lqkKlkeLee 37 (42)
T 2l5g_B 9 QNMDRVDREITMVEQQISKLKKKQQQLEE 37 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34558888888888888888888887754
No 24
>3sja_C Golgi to ER traffic protein 1; coiled-coil, receptor complex, TA-protein biogenesis, GET PA hydrolase-transport protein complex; 3.00A {Saccharomyces cerevisiae} PDB: 3sjc_C
Probab=62.83 E-value=7.3 Score=24.99 Aligned_cols=30 Identities=30% Similarity=0.450 Sum_probs=25.8
Q ss_pred HHHhHHHHhHHhhHHHHHHHHHHHHHhhhh
Q 040215 13 QQNINKFSKLNNRFHELEDEIKFAKETNDN 42 (123)
Q Consensus 13 QqkIN~FsrLn~r~~~l~~~l~~~k~~le~ 42 (123)
|.-.-++++||.+++-+.++|+.+++.+..
T Consensus 28 QDeFAKWaKL~Rk~DKl~~ele~l~~~l~~ 57 (65)
T 3sja_C 28 QDNYAKWTKNNRKLDSLDKEINNLKDEIQS 57 (65)
T ss_dssp TTTHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 556778999999999999999999988754
No 25
>3d5a_X RF1, peptide chain release factor 1; ribosome, ribonucleoprotein, ribosomal protein, RNA-binding, binding, metal-binding, zinc-finger; 3.21A {Thermus thermophilus} PDB: 2b64_Y 3d5c_X 3mr8_V 3ms0_V
Probab=61.40 E-value=44 Score=27.56 Aligned_cols=39 Identities=18% Similarity=0.226 Sum_probs=24.5
Q ss_pred cHHHHHHhHHHHhHHhhHHHHHHHHHHHHHhhhhhhhhh
Q 040215 9 TWEDQQNINKFSKLNNRFHELEDEIKFAKETNDNLEDAG 47 (123)
Q Consensus 9 t~EDQqkIN~FsrLn~r~~~l~~~l~~~k~~le~L~Da~ 47 (123)
-|.||.+..+.++=++.+..+-..+...+..++.+.++.
T Consensus 24 ~~~d~~~~~~~~ke~~~l~~~v~~~~~~~~~~~~~~~~~ 62 (354)
T 3d5a_X 24 VLKDKGRYQSLSRRYAEMGEVIGLIREYRKVLEDLEQAE 62 (354)
T ss_dssp TTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 366777776666666666666666666666665555543
No 26
>1zbt_A RF-1, peptide chain release factor 1; peptide chain release factor 1 (RF-1), structural joint center for structural genomics, JCSG; 2.34A {Streptococcus mutans}
Probab=60.83 E-value=26 Score=29.13 Aligned_cols=39 Identities=18% Similarity=0.150 Sum_probs=14.8
Q ss_pred cHHHHHHhHHHHhHHhhHHHHHHHHHHHHHhhhhhhhhh
Q 040215 9 TWEDQQNINKFSKLNNRFHELEDEIKFAKETNDNLEDAG 47 (123)
Q Consensus 9 t~EDQqkIN~FsrLn~r~~~l~~~l~~~k~~le~L~Da~ 47 (123)
-|.||.+..+.++=.+.+..+-..+...+..++.+.++.
T Consensus 38 ~~~d~~~~~~~~ke~~~l~~~v~~~~~~~~~~~d~~~~~ 76 (371)
T 1zbt_A 38 VVSDTKRFMELSREEANSRETVAVYREYKQVVQNIADAQ 76 (371)
T ss_dssp ------------CCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 377877666655555555555555555555555555443
No 27
>1zxa_A CGMP-dependent protein kinase 1, alpha isozyme; parallel coiled coil dimer, transferase; NMR {Homo sapiens}
Probab=60.73 E-value=17 Score=23.30 Aligned_cols=40 Identities=23% Similarity=0.323 Sum_probs=28.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040215 72 EEVEIRIEEMKEVNSKTLEKLEKEKETVLAQMNELKKILY 111 (123)
Q Consensus 72 ~~a~e~LE~~~e~~~~ei~~le~~~~~i~~~m~eLK~~LY 111 (123)
....+.+-+....-+..|..|+..+..-+.+..+|+.+|-
T Consensus 10 ~~~~e~~~~~i~~Kde~I~eLE~~L~~kd~eI~eLr~~Ld 49 (67)
T 1zxa_A 10 SELEEDFAKILMLKEERIKELEKRLSEKEEEIQELKRKLH 49 (67)
T ss_dssp -------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445666667777888899999999999999999998773
No 28
>1gqe_A Release factor 2, RF2; protein synthesis, ribosome, macromolecular mimicry, translation; 1.81A {Escherichia coli} SCOP: e.38.1.1 PDB: 1mi6_A 1ml5_Z*
Probab=57.91 E-value=23 Score=29.30 Aligned_cols=39 Identities=10% Similarity=0.275 Sum_probs=25.8
Q ss_pred cHHHHHHhHHHHhHHhhHHHHHHHHHHHHHhhhhhhhhh
Q 040215 9 TWEDQQNINKFSKLNNRFHELEDEIKFAKETNDNLEDAG 47 (123)
Q Consensus 9 t~EDQqkIN~FsrLn~r~~~l~~~l~~~k~~le~L~Da~ 47 (123)
-|.||.+..+.++=++.+..+-..++..+..++.+.++.
T Consensus 46 ~w~d~~~~~~~~ke~~~l~~~v~~~~~~~~~~~d~~~~~ 84 (365)
T 1gqe_A 46 VWNEPERAQALGKERSSLEAVVDTLDQMKQGLEDVSGLL 84 (365)
T ss_dssp GGGSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 377888777766666666666666666666666665554
No 29
>1kd8_B GABH BLL, GCN4 acid base heterodimer base-D12LA16L; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kd9_B 1kdd_B
Probab=56.25 E-value=25 Score=20.03 Aligned_cols=28 Identities=18% Similarity=0.131 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040215 83 EVNSKTLEKLEKEKETVLAQMNELKKIL 110 (123)
Q Consensus 83 e~~~~ei~~le~~~~~i~~~m~eLK~~L 110 (123)
.+++..+++|-.+..+++.+...||..|
T Consensus 4 nQLE~KVEeLl~~~~~Le~eV~RLk~ll 31 (36)
T 1kd8_B 4 KQLKAKVEELKSKLWHLKNKVARLKKKN 31 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhHHHHHHHHHHHHHh
Confidence 3455556666666666666666666554
No 30
>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C
Probab=54.99 E-value=63 Score=26.97 Aligned_cols=29 Identities=14% Similarity=0.193 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040215 82 KEVNSKTLEKLEKEKETVLAQMNELKKIL 110 (123)
Q Consensus 82 ~e~~~~ei~~le~~~~~i~~~m~eLK~~L 110 (123)
.......|..|+..+...+.++..|+.++
T Consensus 100 ~~~~~~~i~~l~~~~~~~~~~i~~l~~~i 128 (409)
T 1m1j_C 100 ILAHENTIQQLTDMHIMNSNKITQLKQKI 128 (409)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hcchHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 33444577777777777777888887644
No 31
>2wuj_A Septum site-determining protein diviva; bacterial cell division, septation, cell cycle, sporulation; 1.40A {Bacillus subtilis} PDB: 2wuk_A
Probab=54.61 E-value=19 Score=21.85 Aligned_cols=42 Identities=24% Similarity=0.278 Sum_probs=26.8
Q ss_pred eeeecChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040215 65 VFAHVPREEVEIRIEEMKEVNSKTLEKLEKEKETVLAQMNELKKIL 110 (123)
Q Consensus 65 ~Fv~~~~~~a~e~LE~~~e~~~~ei~~le~~~~~i~~~m~eLK~~L 110 (123)
.|-=.+.+++-..|+ .+...++.+..+..+++.++..|+..|
T Consensus 16 ~~rGY~~~EVD~FLd----~v~~~~~~l~~e~~~L~~~~~~l~~~l 57 (57)
T 2wuj_A 16 SFRGYDEDEVNEFLA----QVRKDYEIVLRKKTELEAKVNELDERI 57 (57)
T ss_dssp ETTEEEHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHC-----
T ss_pred CCCCcCHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 455667777777777 566677777777777777777776554
No 32
>3viq_B Mating-type switching protein SWI5; recombination activator; 2.20A {Schizosaccharomyces pombe} PDB: 3vir_A*
Probab=54.20 E-value=15 Score=24.69 Aligned_cols=28 Identities=18% Similarity=0.218 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040215 83 EVNSKTLEKLEKEKETVLAQMNELKKIL 110 (123)
Q Consensus 83 e~~~~ei~~le~~~~~i~~~m~eLK~~L 110 (123)
+.+++++..|+++...+..+..+++..|
T Consensus 4 ~~L~~~i~~L~~q~~~L~~ei~~~~a~L 31 (85)
T 3viq_B 4 SQLESRVHLLEQQKEQLESSLQDALAKL 31 (85)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4556666666666666666666666554
No 33
>2y7c_A Type-1 restriction enzyme ecoki specificity prote; transferase; 18.00A {Escherichia coli} PDB: 2y7h_A*
Probab=53.96 E-value=42 Score=26.12 Aligned_cols=52 Identities=21% Similarity=0.242 Sum_probs=44.5
Q ss_pred ecceeeecChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 040215 62 IGEVFAHVPREEVEIRIEEMKEVNSKTLEKLEKEKETVLAQMNELKKILYGK 113 (123)
Q Consensus 62 iGe~Fv~~~~~~a~e~LE~~~e~~~~ei~~le~~~~~i~~~m~eLK~~LYaK 113 (123)
|...-|.+|.-+-|.++-+..+.+.+.++.+..........+.+||..|-.+
T Consensus 365 l~~~~i~lPpl~EQ~~Iv~~l~~~~~~id~l~~~~~~~~~~l~~lk~sLL~~ 416 (464)
T 2y7c_A 365 IKSQVVLLPPVKEQAEIVRRVEQLFAYADTIEKQVNNALARVNNLTQSILAK 416 (464)
T ss_dssp HHHCEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhcCcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5667788888888888888888888999999999988888999999888765
No 34
>2wt7_B Transcription factor MAFB; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 2wty_A* 1k1v_A
Probab=53.82 E-value=47 Score=22.28 Aligned_cols=38 Identities=16% Similarity=0.129 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040215 75 EIRIEEMKEVNSKTLEKLEKEKETVLAQMNELKKILYG 112 (123)
Q Consensus 75 ~e~LE~~~e~~~~ei~~le~~~~~i~~~m~eLK~~LYa 112 (123)
...||..+..+..+++.|..+...+..++..+|..+-+
T Consensus 50 ~~~LE~e~~~L~~e~~~L~~e~~~~~~e~d~~k~k~~~ 87 (90)
T 2wt7_B 50 KHHLENEKTQLIQQVEQLKQEVSRLARERDAYKVKSEK 87 (90)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46788999999999999999999999999999977654
No 35
>3q0x_A Centriole protein; centrosome protein, coiled coil mediated dimer, structural P; 3.02A {Chlamydomonas reinhardtii}
Probab=53.51 E-value=54 Score=25.40 Aligned_cols=48 Identities=10% Similarity=-0.038 Sum_probs=40.5
Q ss_pred cceeeecChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040215 63 GEVFAHVPREEVEIRIEEMKEVNSKTLEKLEKEKETVLAQMNELKKIL 110 (123)
Q Consensus 63 Ge~Fv~~~~~~a~e~LE~~~e~~~~ei~~le~~~~~i~~~m~eLK~~L 110 (123)
-=.|..-+.+.+..+|......+++++..|+.+++.+..+.+.+.++|
T Consensus 154 SL~f~~asde~Ik~yLa~R~~~lK~kl~~l~~~L~~~~~e~~s~~~~~ 201 (228)
T 3q0x_A 154 TLAFRPGNDSVVKQFLAFRLSEVKGTCHDLSDDLSRTRDDRDSMVAQL 201 (228)
T ss_dssp EEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEeecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 335788888999999999999999999888888888888888887776
No 36
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=53.39 E-value=32 Score=20.23 Aligned_cols=35 Identities=20% Similarity=0.197 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040215 76 IRIEEMKEVNSKTLEKLEKEKETVLAQMNELKKIL 110 (123)
Q Consensus 76 e~LE~~~e~~~~ei~~le~~~~~i~~~m~eLK~~L 110 (123)
..||.....++....+|+++++.++.+=.=|+..|
T Consensus 6 ~eLE~r~k~le~~naeLEervstLq~EN~mLRqvl 40 (42)
T 2oqq_A 6 SELENRVKDLENKNSELEERLSTLQNENQMLRHIL 40 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHh
Confidence 46788888899999999999999998888887766
No 37
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=53.35 E-value=71 Score=24.18 Aligned_cols=27 Identities=22% Similarity=0.067 Sum_probs=12.0
Q ss_pred HHHhHHhhHHHHHHHHHHHHHhhhhhh
Q 040215 18 KFSKLNNRFHELEDEIKFAKETNDNLE 44 (123)
Q Consensus 18 ~FsrLn~r~~~l~~~l~~~k~~le~L~ 44 (123)
.++.++.++..+...+..++.++..++
T Consensus 40 ~~~~l~~~~~~~~~~l~d~~~~~~~~e 66 (256)
T 3na7_A 40 DKEAKNKAILNLEEEKLALKLQVSKNE 66 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444443333
No 38
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=52.42 E-value=45 Score=23.06 Aligned_cols=19 Identities=26% Similarity=0.375 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 040215 92 LEKEKETVLAQMNELKKIL 110 (123)
Q Consensus 92 le~~~~~i~~~m~eLK~~L 110 (123)
|......+.....+||..|
T Consensus 102 L~~~kkkle~e~~~Lk~~l 120 (129)
T 2fxo_A 102 LTAKKRKLEDECSELKRDI 120 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333333555555565554
No 39
>2xi5_A RNA polymerase L, L-protein; transferase, bunyaviridae, orthobunyavirus, aedes triseriatu hydrolase; 2.20A {Bunyavirus la crosse} PDB: 2xi7_A*
Probab=52.31 E-value=6.1 Score=30.09 Aligned_cols=15 Identities=47% Similarity=0.846 Sum_probs=12.3
Q ss_pred HHHHHHHHHHhcCCC
Q 040215 103 MNELKKILYGKFRDS 117 (123)
Q Consensus 103 m~eLK~~LYaKFG~~ 117 (123)
-=+||+.||.|||+.
T Consensus 162 ff~Lr~~L~dkF~Dd 176 (184)
T 2xi5_A 162 FFDLKQLLYEKFGDD 176 (184)
T ss_dssp HHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHhcCh
Confidence 458999999999974
No 40
>2lw1_A ABC transporter ATP-binding protein UUP; ABC REG subfamily, DNA binding protein; NMR {Escherichia coli}
Probab=52.12 E-value=28 Score=22.60 Aligned_cols=19 Identities=21% Similarity=0.326 Sum_probs=8.1
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 040215 77 RIEEMKEVNSKTLEKLEKE 95 (123)
Q Consensus 77 ~LE~~~e~~~~ei~~le~~ 95 (123)
.|+...+.++.++..|+..
T Consensus 26 ~le~~Ie~LE~~i~~le~~ 44 (89)
T 2lw1_A 26 QLPQLLEDLEAKLEALQTQ 44 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444433
No 41
>3okg_A Restriction endonuclease S subunits; coiled-coil, type I methyltransferase, DNA binding, DNA BIND protein; 1.95A {Thermoanaerobacter tengcongensis}
Probab=50.96 E-value=21 Score=27.53 Aligned_cols=52 Identities=19% Similarity=0.325 Sum_probs=40.6
Q ss_pred ecceeeecChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 040215 62 IGEVFAHVPREEVEIRIEEMKEVNSKTLEKLEKEKETVLAQMNELKKILYGK 113 (123)
Q Consensus 62 iGe~Fv~~~~~~a~e~LE~~~e~~~~ei~~le~~~~~i~~~m~eLK~~LYaK 113 (123)
++..-|.+|.-+-|.++-+....+++.++.+..........+.+||..|..|
T Consensus 355 l~~~~I~lP~l~eQ~~I~~~l~~~d~~i~~l~~~~~~~~~~L~~lk~~LL~k 406 (412)
T 3okg_A 355 LQNVFIPLPPLEEQRRIVAYLDQIQQQVAALKRAQAETEAELKRLEQAILDK 406 (412)
T ss_dssp HHHCEEEECCHHHHHHHHHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHH
T ss_pred HhcCcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455677777778888888888888888888887767778888888887765
No 42
>1uo4_A General control protein GCN4; four helix bundle, cavity, iodobenzene; 1.70A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1uo3_A 1unt_A 1uo5_A 1unu_A 1unv_A 1uo1_A 2ccf_A 2cce_A 1unx_A 1unw_A 1w5j_A* 1w5k_A* 1u9f_A* 3f86_A* 3f87_A* 3hez_A* 3c3f_A*
Probab=49.76 E-value=26 Score=19.75 Aligned_cols=28 Identities=14% Similarity=0.179 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040215 83 EVNSKTLEKLEKEKETVLAQMNELKKIL 110 (123)
Q Consensus 83 e~~~~ei~~le~~~~~i~~~m~eLK~~L 110 (123)
.+++..++.|=.+..+++.+...||..|
T Consensus 4 ~QLEdKVEeLl~~n~~Le~EV~RLk~LL 31 (34)
T 1uo4_A 4 KQIEDKGEEILSKLYHIENELARIKKLL 31 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 4566667777777777777777787665
No 43
>1t3j_A Mitofusin 1; coiled coil antiparallel, dimer, membrane protein; 2.50A {Mus musculus} SCOP: h.4.16.1
Probab=49.27 E-value=52 Score=22.38 Aligned_cols=39 Identities=18% Similarity=0.221 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 040215 76 IRIEEMKEVNSKTLEKLEKEKETVLAQMNELKKILYGKFR 115 (123)
Q Consensus 76 e~LE~~~e~~~~ei~~le~~~~~i~~~m~eLK~~LYaKFG 115 (123)
.....-...++.+|+.|+.++..++.-.+.+| .|-.|++
T Consensus 43 ~~Vd~t~~eL~~EI~~L~~eI~~LE~iqs~aK-~LRnKA~ 81 (96)
T 1t3j_A 43 QQVDMTQKHLEEEIARLSKEIDQLEKMQNNSK-LLRNKAV 81 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH-HHHHHHH
Confidence 34455566777788888888888777777777 4555553
No 44
>2pnv_A Small conductance calcium-activated potassium channel protein 2; leucine zipper, SKCA channel, membrane protein; 2.10A {Rattus norvegicus}
Probab=48.87 E-value=21 Score=20.94 Aligned_cols=27 Identities=26% Similarity=0.318 Sum_probs=23.0
Q ss_pred HHhHHhhHHHHHHHHHHHHHhhhhhhh
Q 040215 19 FSKLNNRFHELEDEIKFAKETNDNLED 45 (123)
Q Consensus 19 FsrLn~r~~~l~~~l~~~k~~le~L~D 45 (123)
-|-+|.|..+++..|..+...++.|..
T Consensus 11 vsel~~r~e~LE~Ri~~LE~KLd~L~~ 37 (43)
T 2pnv_A 11 ISDLNERSEDFEKRIVTLETKLETLIG 37 (43)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 367899999999999999988887754
No 45
>3oa7_A Head morphogenesis protein, chaotic nuclear migra protein 67 fusion protein; coiled coils, structural protein, spindle POLE BODY; 2.30A {Bacillus phage PHI29}
Probab=48.84 E-value=67 Score=24.72 Aligned_cols=46 Identities=13% Similarity=0.102 Sum_probs=40.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 040215 71 REEVEIRIEEMKEVNSKTLEKLEKEKETVLAQMNELKKILYGKFRD 116 (123)
Q Consensus 71 ~~~a~e~LE~~~e~~~~ei~~le~~~~~i~~~m~eLK~~LYaKFG~ 116 (123)
..+|..+|++..-..-++...|+...++...+.++||..|..=-||
T Consensus 28 ~~~~~~~~~a~~~s~~s~~~dl~~s~~~l~ae~~~L~~~l~kLeGn 73 (206)
T 3oa7_A 28 RTEALQQLRVNYGSFVSEYNDLTKSHNTLSKELDNLRSRFGNLEGN 73 (206)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHccCC
Confidence 4567788999999999999999999999999999999998877776
No 46
>1gmj_A ATPase inhibitor; coiled-coil structure, P dependent oligomerization, ATP hydrolysis; 2.2A {Bos taurus} SCOP: h.4.8.1 PDB: 1ohh_H* 1hf9_A
Probab=48.67 E-value=57 Score=21.73 Aligned_cols=37 Identities=14% Similarity=0.260 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040215 74 VEIRIEEMKEVNSKTLEKLEKEKETVLAQMNELKKIL 110 (123)
Q Consensus 74 a~e~LE~~~e~~~~ei~~le~~~~~i~~~m~eLK~~L 110 (123)
..+.|.+.++.+..+|+.-..+++.++..+...|..+
T Consensus 38 ekEqL~~LKkkl~~el~~h~~ei~~le~~i~rhk~~i 74 (84)
T 1gmj_A 38 AKEQLAALKKHKENEISHHAKEIERLQKEIERHKQSI 74 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566777788888888888888988888888887765
No 47
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=48.31 E-value=59 Score=23.81 Aligned_cols=40 Identities=20% Similarity=0.287 Sum_probs=33.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040215 72 EEVEIRIEEMKEVNSKTLEKLEKEKETVLAQMNELKKILY 111 (123)
Q Consensus 72 ~~a~e~LE~~~e~~~~ei~~le~~~~~i~~~m~eLK~~LY 111 (123)
-.....++.....+...+..-+..++.++.++.+||.+++
T Consensus 107 r~~~~~~e~r~~~L~~ql~e~~~~l~~lq~ql~~LK~v~~ 146 (154)
T 2ocy_A 107 RKEKYAIEILNKRLTEQLREKDTLLDTLTLQLKNLKKVMH 146 (154)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445667777788889999999999999999999998765
No 48
>2e7s_A RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=48.05 E-value=15 Score=26.52 Aligned_cols=39 Identities=21% Similarity=0.250 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040215 73 EVEIRIEEMKEVNSKTLEKLEKEKETVLAQMNELKKILY 111 (123)
Q Consensus 73 ~a~e~LE~~~e~~~~ei~~le~~~~~i~~~m~eLK~~LY 111 (123)
.....++.....+...+..-+.-++..+.++.+||.+++
T Consensus 96 ~~~~~~e~r~~~L~~ql~e~e~ll~~lq~QL~~LK~v~~ 134 (135)
T 2e7s_A 96 MEKYAIEILNKRLTEQLREKDMLLDTLTLQLKNLKKVMH 134 (135)
T ss_dssp HHHHHHHHHHHHHHHTTTHHHHCC---------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 344556666667777777777888888899999998876
No 49
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=47.91 E-value=32 Score=21.28 Aligned_cols=29 Identities=17% Similarity=0.233 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040215 82 KEVNSKTLEKLEKEKETVLAQMNELKKIL 110 (123)
Q Consensus 82 ~e~~~~ei~~le~~~~~i~~~m~eLK~~L 110 (123)
...++.+++.|+.+-..+..++..|+..|
T Consensus 32 ~~~Le~~v~~L~~eN~~L~~ev~~Lr~~l 60 (63)
T 2dgc_A 32 MKQLEDKVEELLSKNYHLENEVARLKKLV 60 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667777777777777777777777654
No 50
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=47.52 E-value=57 Score=21.37 Aligned_cols=36 Identities=11% Similarity=0.176 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040215 76 IRIEEMKEVNSKTLEKLEKEKETVLAQMNELKKILY 111 (123)
Q Consensus 76 e~LE~~~e~~~~ei~~le~~~~~i~~~m~eLK~~LY 111 (123)
..++...+.+..++..|......+..++..|+..|.
T Consensus 6 ~~~~~~~~~~~~~l~~L~~~~~~l~~~i~~l~~~l~ 41 (112)
T 1l8d_A 6 EELETKKTTIEEERNEITQRIGELKNKIGDLKTAIE 41 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345556667777888888888888888888886653
No 51
>3c3f_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-alpha-beta) backbone...; helix bundle, foldamer, unknown function, de novo protein; HET: B3K B3D B3E BIL B3L BAL; 2.00A {Synthetic} SCOP: h.1.3.1
Probab=47.52 E-value=36 Score=19.13 Aligned_cols=28 Identities=14% Similarity=0.085 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040215 83 EVNSKTLEKLEKEKETVLAQMNELKKIL 110 (123)
Q Consensus 83 e~~~~ei~~le~~~~~i~~~m~eLK~~L 110 (123)
.+++..++.|=.+..+++.+...||..|
T Consensus 4 nQLEdKVEeLl~~~~~Le~EV~RLk~ll 31 (34)
T 3c3f_A 4 XQIEXKLEXILSXLYHXENEXARIXKLL 31 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 4556666666666677777777777665
No 52
>3sjb_C Golgi to ER traffic protein 1; coiled-coil, receptor complex, TA-protein biogenesis, GET PA hydrolase-transport protein complex; 3.30A {Saccharomyces cerevisiae}
Probab=47.16 E-value=16 Score=24.92 Aligned_cols=30 Identities=30% Similarity=0.450 Sum_probs=25.5
Q ss_pred HHHhHHHHhHHhhHHHHHHHHHHHHHhhhh
Q 040215 13 QQNINKFSKLNNRFHELEDEIKFAKETNDN 42 (123)
Q Consensus 13 QqkIN~FsrLn~r~~~l~~~l~~~k~~le~ 42 (123)
|.-.-++++||.+++-+.++|+.+++.+..
T Consensus 45 QDeFAKWaKL~Rk~DKl~~ele~l~~~l~~ 74 (93)
T 3sjb_C 45 QDNYAKWTKNNRKLDSLDKEINNLKDEIQS 74 (93)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455678999999999999999999887754
No 53
>3okg_A Restriction endonuclease S subunits; coiled-coil, type I methyltransferase, DNA binding, DNA BIND protein; 1.95A {Thermoanaerobacter tengcongensis}
Probab=46.20 E-value=71 Score=24.45 Aligned_cols=55 Identities=13% Similarity=0.159 Sum_probs=43.3
Q ss_pred ecceeeecChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCC
Q 040215 62 IGEVFAHVPREEVEIRIEEMKEVNSKTLEKLEKEKETVLAQMNELKKILYGK-FRD 116 (123)
Q Consensus 62 iGe~Fv~~~~~~a~e~LE~~~e~~~~ei~~le~~~~~i~~~m~eLK~~LYaK-FG~ 116 (123)
+...-|.+|.-+-|.++-+....+.+.|+.+......+......|+..++.+ |++
T Consensus 164 l~~~~i~lP~l~eQ~~I~~~l~~~~~~i~~~~~~~~~~~~~~~~l~q~~~~~~f~~ 219 (412)
T 3okg_A 164 VYNTLIPLPPLEEQRRIVAKVEALMERVREVRRLRAEAQKDTELLMQTALAEVFPH 219 (412)
T ss_dssp HHTSEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCC
T ss_pred HhcCcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC
Confidence 5666788888889999999999999999999877777777777777666554 544
No 54
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=46.11 E-value=62 Score=21.42 Aligned_cols=35 Identities=14% Similarity=0.198 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040215 78 IEEMKEVNSKTLEKLEKEKETVLAQMNELKKILYG 112 (123)
Q Consensus 78 LE~~~e~~~~ei~~le~~~~~i~~~m~eLK~~LYa 112 (123)
++...+.|..+-..|..++..+..++..||..|..
T Consensus 41 ~~~r~~~Le~EN~~Lr~~v~~L~~E~~~Lr~ll~~ 75 (87)
T 1hjb_A 41 TQHKVLELTAENERLQKKVEQLSRELSTLRNLFKQ 75 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444455555555555566666666666655543
No 55
>2wq1_A General control protein GCN4; TAA, nucleus, coiled coil, DNA-binding, protein export, ION coordination, polar core residues; 1.08A {Saccharomyces cerevisiae} PDB: 2wq0_A 2wq2_A 2wq3_A 2wpz_A 2wpy_A 1ij0_A 1ij1_A 1gcm_A 1rb5_A 1rb6_A 1rb1_A 1rb4_A 1swi_A 3k7z_A 1zii_A 1zij_A 1ij2_A 1ij3_A 1zil_A 1zim_A ...
Probab=45.99 E-value=38 Score=18.94 Aligned_cols=28 Identities=7% Similarity=0.045 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040215 83 EVNSKTLEKLEKEKETVLAQMNELKKIL 110 (123)
Q Consensus 83 e~~~~ei~~le~~~~~i~~~m~eLK~~L 110 (123)
.+++..+++|-.+..++..+...||..|
T Consensus 3 nQLEdKVEell~~~~~le~EV~Rl~~ll 30 (33)
T 2wq1_A 3 KQLEDKIEENTSKIYHNTNEIARNTKLV 30 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 3556666666667777777777777654
No 56
>3lss_A Seryl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, serrs, translation, ATP-binding, nucleotide-binding, structural genomics; HET: ATP; 1.95A {Trypanosoma brucei} PDB: 3lsq_A*
Probab=45.69 E-value=1.4e+02 Score=25.35 Aligned_cols=23 Identities=17% Similarity=0.177 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 040215 82 KEVNSKTLEKLEKEKETVLAQMN 104 (123)
Q Consensus 82 ~e~~~~ei~~le~~~~~i~~~m~ 104 (123)
...+..++..++.++..++.++.
T Consensus 113 ~~~l~~~i~~le~~~~~~~~~~~ 135 (484)
T 3lss_A 113 SKDLSDQVAGLAKEAQQLEEERD 135 (484)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555566666665555555554
No 57
>4dzn_A Coiled-coil peptide CC-PIL; de novo protein; HET: PHI; 1.59A {Synthetic} PDB: 4dzm_A* 4dzl_A* 4dzk_A 1u0i_A 1u0i_B
Probab=45.43 E-value=37 Score=18.63 Aligned_cols=27 Identities=19% Similarity=0.212 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040215 83 EVNSKTLEKLEKEKETVLAQMNELKKI 109 (123)
Q Consensus 83 e~~~~ei~~le~~~~~i~~~m~eLK~~ 109 (123)
..+..+|..|..++..++-++..||.-
T Consensus 5 aalkqeiaalkkeiaalkfeiaalkqg 31 (33)
T 4dzn_A 5 AALKQEIAALKKEIAALKFEIAALKQG 31 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 456677777777777777777777753
No 58
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=44.86 E-value=32 Score=23.84 Aligned_cols=27 Identities=26% Similarity=0.334 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040215 80 EMKEVNSKTLEKLEKEKETVLAQMNEL 106 (123)
Q Consensus 80 ~~~e~~~~ei~~le~~~~~i~~~m~eL 106 (123)
.....+.+.-.+++.++.++...+.++
T Consensus 97 e~~~~L~~~kkkle~e~~~Lk~~led~ 123 (129)
T 2fxo_A 97 EMNAELTAKKRKLEDECSELKRDIDDL 123 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444444443
No 59
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=44.25 E-value=1.2e+02 Score=24.34 Aligned_cols=34 Identities=18% Similarity=0.101 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040215 75 EIRIEEMKEVNSKTLEKLEKEKETVLAQMNELKK 108 (123)
Q Consensus 75 ~e~LE~~~e~~~~ei~~le~~~~~i~~~m~eLK~ 108 (123)
.+.+.+.++.++.++.++...+.+......++.+
T Consensus 444 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 477 (487)
T 3oja_A 444 ETQLAEENARLKKLNGEADLALASANATLQELVV 477 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhhhhhhhhhhhhhHhcccHHHHHHH
Confidence 4445557777777777777777777777777654
No 60
>4abx_A DNA repair protein RECN; DNA binding protein, ATP binding protein, double break repair, coiled-coil; HET: DNA; 2.04A {Deinococcus radiodurans}
Probab=43.64 E-value=86 Score=22.34 Aligned_cols=46 Identities=15% Similarity=0.215 Sum_probs=30.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHhcCCCC
Q 040215 72 EEVEIRIEEMKEVNSKTLEKLE----------KEKETVLAQMNELKKILYGKFRDSI 118 (123)
Q Consensus 72 ~~a~e~LE~~~e~~~~ei~~le----------~~~~~i~~~m~eLK~~LYaKFG~~I 118 (123)
..+.++|+...-.++.-...|. .++..+..+|..|. .|--|||.+|
T Consensus 90 ~~~~e~l~~a~~~l~d~~~~L~~y~~~le~DP~rL~~ie~RL~~l~-~L~RKyg~~~ 145 (175)
T 4abx_A 90 MQLQNELRAALESVQAIAGELRDVAEGSAADPEALDRVEARLSALS-KLKNKYGPTL 145 (175)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHH-HHHHHHCSSH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHH-HHHHHcCCCH
Confidence 3455555555555554444442 45778899999998 7888999654
No 61
>3gpv_A Transcriptional regulator, MERR family; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 1.90A {Bacillus thuringiensis serovarkonkukian}
Probab=42.86 E-value=45 Score=23.28 Aligned_cols=41 Identities=5% Similarity=0.036 Sum_probs=29.1
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040215 70 PREEVEIRIEEMKEVNSKTLEKLEKEKETVLAQMNELKKIL 110 (123)
Q Consensus 70 ~~~~a~e~LE~~~e~~~~ei~~le~~~~~i~~~m~eLK~~L 110 (123)
+.++....|+.....++.++..|+..+..+...+..++..+
T Consensus 92 ~~~~~~~~l~~~~~~l~~~i~~L~~~~~~L~~~i~~~~~~~ 132 (148)
T 3gpv_A 92 TILHRLKLMKQQEANVLQLIQDTEKNLKKIQQKIAKYEDEI 132 (148)
T ss_dssp GHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC----
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566778888888888888888888888888777766544
No 62
>3m48_A General control protein GCN4; leucine zipper, synthetic peptide, alpha helix, activa amino-acid biosynthesis, DNA-binding, nucleus; 1.45A {Synthetic} PDB: 3i1g_A 2ahp_A* 2o7h_A
Probab=42.77 E-value=36 Score=19.06 Aligned_cols=27 Identities=19% Similarity=0.232 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040215 84 VNSKTLEKLEKEKETVLAQMNELKKIL 110 (123)
Q Consensus 84 ~~~~ei~~le~~~~~i~~~m~eLK~~L 110 (123)
+++.+++.|-.+-.+++.+...||..|
T Consensus 4 QLE~kVEeLl~~n~~Le~EV~RLk~Ll 30 (33)
T 3m48_A 4 QLEAKVEELLSKNWNLENEVARLKKLV 30 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHh
Confidence 455566666666666666666776654
No 63
>2y7c_A Type-1 restriction enzyme ecoki specificity prote; transferase; 18.00A {Escherichia coli} PDB: 2y7h_A*
Probab=42.38 E-value=81 Score=24.43 Aligned_cols=52 Identities=10% Similarity=0.132 Sum_probs=44.1
Q ss_pred ecceeeecChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 040215 62 IGEVFAHVPREEVEIRIEEMKEVNSKTLEKLEKEKETVLAQMNELKKILYGK 113 (123)
Q Consensus 62 iGe~Fv~~~~~~a~e~LE~~~e~~~~ei~~le~~~~~i~~~m~eLK~~LYaK 113 (123)
+...-|.+|.-.-|.++-+....+.+.++.+...++.....+.++|..|..+
T Consensus 152 l~~~~iplPpl~EQ~~Iv~~Ld~~~~~id~~~~~~~~~~~~l~~~k~~ll~~ 203 (464)
T 2y7c_A 152 FDLINIPIPPLAEQKIIAEKLDTLLAQVDSTKARFEQIPQILKRFRQAVLGG 203 (464)
T ss_dssp HHHCEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hccCeeecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6677788888888888888888888899999999988888999999887765
No 64
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=41.83 E-value=55 Score=21.71 Aligned_cols=39 Identities=21% Similarity=0.253 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040215 73 EVEIRIEEMKEVNSKTLEKLEKEKETVLAQMNELKKILY 111 (123)
Q Consensus 73 ~a~e~LE~~~e~~~~ei~~le~~~~~i~~~m~eLK~~LY 111 (123)
.-.+.|+.....|..+|+.|..++..+..-+..+-..+.
T Consensus 43 ~r~~~Le~EN~~Lr~~v~~L~~E~~~Lr~ll~~~p~~~~ 81 (87)
T 1hjb_A 43 HKVLELTAENERLQKKVEQLSRELSTLRNLFKQLPEPLL 81 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCcHHHh
Confidence 345778888999999999999999888877776554433
No 65
>1kd8_A GABH AIV, GCN4 acid base heterodimer acid-D12IA16V; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kdd_A 1kd9_A
Probab=41.36 E-value=49 Score=18.83 Aligned_cols=27 Identities=19% Similarity=0.131 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040215 84 VNSKTLEKLEKEKETVLAQMNELKKIL 110 (123)
Q Consensus 84 ~~~~ei~~le~~~~~i~~~m~eLK~~L 110 (123)
+++.+++.|-.+...++.+...||..|
T Consensus 5 QLE~kVEeLl~~~~~Le~EV~RL~~ll 31 (36)
T 1kd8_A 5 QLEAEVEEIESEVWHLENEVARLEKEN 31 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 344455555555555555555555443
No 66
>2oxj_A Hybrid alpha/beta peptide based on the GCN4-P1 Se heptad positions B and F substituted...; helix bundle, foldamer, unknown function; HET: B3K B3D B3E B3S B3Y B3X B3A BAL; 2.00A {Synthetic} PDB: 2oxk_A*
Probab=41.13 E-value=48 Score=18.65 Aligned_cols=28 Identities=11% Similarity=0.177 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040215 83 EVNSKTLEKLEKEKETVLAQMNELKKIL 110 (123)
Q Consensus 83 e~~~~ei~~le~~~~~i~~~m~eLK~~L 110 (123)
.+++..++.|=.+-++++.+...||..|
T Consensus 4 nQLE~kVEeLl~~n~~Le~eV~rLk~ll 31 (34)
T 2oxj_A 4 XQLEXKVXELLXKNXHLEXEVXRLKXLV 31 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 3555666666666667777777777655
No 67
>2bni_A General control protein GCN4; four helix bundle, antiparallel four helix bundle acyl transferase; HET: TYZ; 1.5A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2ccn_A 1w5k_A* 2ccf_A 2cce_A 1w5j_A* 1uo2_A 1gcl_A 1uo1_A 1unv_A 1uo0_A 1unt_A 1uo5_A 1unz_A 1unx_A 1unu_A 1unw_A 1uo4_A 1uo3_A 1uny_A 1u9f_A* ...
Probab=40.96 E-value=38 Score=19.08 Aligned_cols=28 Identities=18% Similarity=0.343 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040215 83 EVNSKTLEKLEKEKETVLAQMNELKKIL 110 (123)
Q Consensus 83 e~~~~ei~~le~~~~~i~~~m~eLK~~L 110 (123)
.+++..++.|=.+-.++..+...||..|
T Consensus 4 nQLEdKvEeLl~~~~~L~~EV~RLk~lL 31 (34)
T 2bni_A 4 KQIEDKLEEILSKGHHICNELARIKKLL 31 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred hHHHHHHHHHHHccHHHHHHHHHHHHHh
Confidence 4566677777777777777778887665
No 68
>3onj_A T-snare VTI1; helix, HABC, protein transport; 1.92A {Saccharomyces cerevisiae} PDB: 3onl_C
Probab=40.88 E-value=19 Score=23.87 Aligned_cols=28 Identities=18% Similarity=0.247 Sum_probs=24.8
Q ss_pred HHhHHhhHHHHHHHHHH-HHHhhhhhhhh
Q 040215 19 FSKLNNRFHELEDEIKF-AKETNDNLEDA 46 (123)
Q Consensus 19 FsrLn~r~~~l~~~l~~-~k~~le~L~Da 46 (123)
=+.+|+|+..++.++.. +|.++..|-|.
T Consensus 67 R~~~~~klr~Yk~dl~~~lk~~lk~l~d~ 95 (97)
T 3onj_A 67 RATYKAKLREWKKTIQSDIKRPLQSLVDS 95 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHTHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 37899999999999999 99999988775
No 69
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=40.38 E-value=72 Score=25.64 Aligned_cols=37 Identities=19% Similarity=0.240 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040215 73 EVEIRIEEMKEVNSKTLEKLEKEKETVLAQMNELKKI 109 (123)
Q Consensus 73 ~a~e~LE~~~e~~~~ei~~le~~~~~i~~~m~eLK~~ 109 (123)
..++.|++.+..-+++|.+++.++.++..++.++..+
T Consensus 429 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 465 (471)
T 3mq9_A 429 ALMASLDAEKAQGQKKVEELEGEITTLNHKLQDASAE 465 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456666666666666666666666666666555543
No 70
>1uii_A Geminin; human, DNA replication, cell cycle; 2.00A {Homo sapiens} SCOP: h.1.28.1
Probab=40.28 E-value=38 Score=22.58 Aligned_cols=32 Identities=22% Similarity=0.369 Sum_probs=26.7
Q ss_pred HHhHHhhHHHHHHHHHHHHHhhhhhhhhhhhh
Q 040215 19 FSKLNNRFHELEDEIKFAKETNDNLEDAGNEL 50 (123)
Q Consensus 19 FsrLn~r~~~l~~~l~~~k~~le~L~Da~~El 50 (123)
=-.||.+...+++++..+|.+.+.|..++..+
T Consensus 48 N~~Lh~~ie~l~eEi~~lk~en~eL~elae~~ 79 (83)
T 1uii_A 48 NEKLHKEIEQKDNEIARLKKENKELAEVAEHV 79 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34688889999999999999999988877654
No 71
>3c3g_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-beta) backbone; helix bundle, foldamer, unknown function protein; HET: HMR B3Q B3D B3E B3L BIL B3K BAL GOL; 1.80A {Synthetic} PDB: 3heu_A* 3het_A* 3hev_A* 3hew_A* 3hey_A* 3hex_A* 3c3h_A*
Probab=39.20 E-value=51 Score=18.42 Aligned_cols=28 Identities=11% Similarity=0.204 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040215 83 EVNSKTLEKLEKEKETVLAQMNELKKIL 110 (123)
Q Consensus 83 e~~~~ei~~le~~~~~i~~~m~eLK~~L 110 (123)
.+++..+++|=.+-.+++.+...||..|
T Consensus 3 nQLEdKvEeLl~~~~~Le~EV~RLk~lL 30 (33)
T 3c3g_A 3 KXIEXKLXEIXSKXYHXENXLARIKXLL 30 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 3455666666666667777777777665
No 72
>3gp4_A Transcriptional regulator, MERR family; structural genomics, DNA-BI transcription regulator, PSI-2; 1.85A {Listeria monocytogenes str}
Probab=38.55 E-value=88 Score=21.68 Aligned_cols=39 Identities=3% Similarity=0.068 Sum_probs=26.3
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040215 70 PREEVEIRIEEMKEVNSKTLEKLEKEKETVLAQMNELKK 108 (123)
Q Consensus 70 ~~~~a~e~LE~~~e~~~~ei~~le~~~~~i~~~m~eLK~ 108 (123)
+.+...+.|....+.++++|..|+.....+...+.....
T Consensus 78 ~~~~~~~~L~~~~~~l~~~i~~L~~~~~~L~~~i~~~~~ 116 (142)
T 3gp4_A 78 TLEARAELLKKQRIELKNRIDVMQEALDRLDFKIDNYDT 116 (142)
T ss_dssp GHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566777777777777777777777766666665543
No 73
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=38.38 E-value=64 Score=19.35 Aligned_cols=35 Identities=11% Similarity=0.094 Sum_probs=27.2
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040215 70 PREEVEIRIEEMKEVNSKTLEKLEKEKETVLAQMN 104 (123)
Q Consensus 70 ~~~~a~e~LE~~~e~~~~ei~~le~~~~~i~~~m~ 104 (123)
|...=.+.|-.....++.+++.|..+.+++..++.
T Consensus 16 p~~~d~eaLk~E~~eLk~k~~~L~~~~~el~~~l~ 50 (53)
T 2yy0_A 16 PENPEIELLRLELAEMKEKYEAIVEENKKLKAKLA 50 (53)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33344567788888899999999999988888765
No 74
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=38.22 E-value=65 Score=22.86 Aligned_cols=29 Identities=14% Similarity=0.179 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040215 81 MKEVNSKTLEKLEKEKETVLAQMNELKKI 109 (123)
Q Consensus 81 ~~e~~~~ei~~le~~~~~i~~~m~eLK~~ 109 (123)
..++++.+|..|..++.+...++..|++.
T Consensus 72 ~vqeLqgEI~~Lnq~Lq~a~ae~erlr~~ 100 (121)
T 3mq7_A 72 KVEELEGEITTLNHKLQDASAEVERLRRE 100 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 35566666666666666666666666654
No 75
>2zxx_A Geminin; coiled-coil, cell cycle, coiled coil, DNA replication inhibitor, phosphoprotein, DNA-binding, nucleus, proto-oncogene; HET: DNA; 2.80A {Mus musculus}
Probab=37.68 E-value=31 Score=22.80 Aligned_cols=32 Identities=19% Similarity=0.360 Sum_probs=26.5
Q ss_pred HHhHHhhHHHHHHHHHHHHHhhhhhhhhhhhh
Q 040215 19 FSKLNNRFHELEDEIKFAKETNDNLEDAGNEL 50 (123)
Q Consensus 19 FsrLn~r~~~l~~~l~~~k~~le~L~Da~~El 50 (123)
=.+||.++..+.++|..++.+-..|..++++.
T Consensus 36 N~~Lh~~ie~~~eEi~~LkeEN~~L~el~~~~ 67 (79)
T 2zxx_A 36 NEKLHKEIEQKDSEIARLRKENKDLAEVAEHV 67 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35788888999999999999888888777776
No 76
>1fxk_C Protein (prefoldin); archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1
Probab=37.41 E-value=85 Score=21.19 Aligned_cols=33 Identities=15% Similarity=0.216 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040215 77 RIEEMKEVNSKTLEKLEKEKETVLAQMNELKKI 109 (123)
Q Consensus 77 ~LE~~~e~~~~ei~~le~~~~~i~~~m~eLK~~ 109 (123)
-+++..+-++.+++.++..++.+...+..++.+
T Consensus 85 ~~~eA~~~l~~r~~~l~~~~~~l~~~l~~l~~~ 117 (133)
T 1fxk_C 85 NFEDAMESIKSQKNELESTLQKMGENLRAITDI 117 (133)
T ss_dssp EHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred eHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555555555555555555555555543
No 77
>3twe_A Alpha4H; unknown function; HET: PGE; 1.36A {Synthetic} PDB: 3twf_A* 4g4m_A*
Probab=36.52 E-value=48 Score=17.41 Aligned_cols=21 Identities=33% Similarity=0.426 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 040215 91 KLEKEKETVLAQMNELKKILY 111 (123)
Q Consensus 91 ~le~~~~~i~~~m~eLK~~LY 111 (123)
+|-.++++++.++..|++.|-
T Consensus 5 elykeledlqerlrklrkklr 25 (27)
T 3twe_A 5 ELYKELEDLQERLRKLRKKLR 25 (27)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhc
Confidence 445556666666666666653
No 78
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Probab=35.60 E-value=68 Score=20.77 Aligned_cols=33 Identities=15% Similarity=0.241 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040215 78 IEEMKEVNSKTLEKLEKEKETVLAQMNELKKIL 110 (123)
Q Consensus 78 LE~~~e~~~~ei~~le~~~~~i~~~m~eLK~~L 110 (123)
++.....|..+-..|..++..+..++..||..|
T Consensus 41 ~~~r~~~L~~eN~~L~~~v~~L~~E~~~Lr~ll 73 (78)
T 1gu4_A 41 TQHKVLELTAENERLQKKVEQLSRELSTLRNLF 73 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444445566666666666666666666666544
No 79
>3ghg_C Fibrinogen gamma chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 1deq_C
Probab=35.54 E-value=1.7e+02 Score=24.43 Aligned_cols=90 Identities=10% Similarity=0.168 Sum_probs=53.0
Q ss_pred HHhhHHHHHHHHHHHHHhhhhhhhhhhhh--hcC-------CCccceeeecceeeecChhHHHH--HHHHHHHHHHHHHH
Q 040215 22 LNNRFHELEDEIKFAKETNDNLEDAGNEL--ILT-------DEDIVRFQIGEVFAHVPREEVEI--RIEEMKEVNSKTLE 90 (123)
Q Consensus 22 Ln~r~~~l~~~l~~~k~~le~L~Da~~El--L~d-------dd~~i~ykiGe~Fv~~~~~~a~e--~LE~~~e~~~~ei~ 90 (123)
|+.....+...|..++..++.+...+.+. ++- .+.+.+=--.+++..-+..-..+ +++.........|.
T Consensus 29 L~kye~~V~~~l~~L~~~l~~isn~Ts~~~~~v~~ik~~~~~~q~~~~~n~~~~~q~Skkml~~~~~~~~~~~~~~~~i~ 108 (411)
T 3ghg_C 29 LSTYQTKVDKDLQSLEDILHQVENKTSEVKQLIKAIQLTYNPDESSKPNMIDAATLKSRKMLEEIMKYEASILTHDSSIR 108 (411)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTTCCCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhccchhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhccccCCCCcchhhHHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 45556667777777777777777776665 221 12211111123333333322222 24555666677888
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 040215 91 KLEKEKETVLAQMNELKKILY 111 (123)
Q Consensus 91 ~le~~~~~i~~~m~eLK~~LY 111 (123)
.|+..+......+..|+..+-
T Consensus 109 ~l~~~~~~~~~~i~~L~~~v~ 129 (411)
T 3ghg_C 109 YLQEIYNSNNQKIVNLKEKVA 129 (411)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 888888888888888886653
No 80
>4fla_A Regulation of nuclear PRE-mRNA domain-containing 1B; structural genomics consortium, SGC, transcription; 2.20A {Homo sapiens}
Probab=35.22 E-value=61 Score=23.38 Aligned_cols=23 Identities=17% Similarity=0.148 Sum_probs=13.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHH
Q 040215 71 REEVEIRIEEMKEVNSKTLEKLE 93 (123)
Q Consensus 71 ~~~a~e~LE~~~e~~~~ei~~le 93 (123)
.++|...|++....+.++++.-.
T Consensus 77 veeA~~~L~eYn~rL~~E~~dR~ 99 (152)
T 4fla_A 77 VDEACLLLAEYNGRLAAELEDRR 99 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 35566666666666666665433
No 81
>3v86_A De novo design helix; computational design of A protein crystal, helical coil, DE designed helix, de novo protein; 2.91A {Synthetic}
Probab=35.05 E-value=52 Score=17.30 Aligned_cols=23 Identities=17% Similarity=0.293 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 040215 85 NSKTLEKLEKEKETVLAQMNELK 107 (123)
Q Consensus 85 ~~~ei~~le~~~~~i~~~m~eLK 107 (123)
+..++-+|..+...++.+.+.||
T Consensus 5 lkdevgelkgevralkdevkdlk 27 (27)
T 3v86_A 5 LKDEVGELKGEVRALKDEVKDLK 27 (27)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHC
T ss_pred hhHHHHHHHhHHHHHHHHHhccC
Confidence 44555555555555555555553
No 82
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=34.85 E-value=38 Score=21.98 Aligned_cols=31 Identities=3% Similarity=0.207 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040215 79 EEMKEVNSKTLEKLEKEKETVLAQMNELKKI 109 (123)
Q Consensus 79 E~~~e~~~~ei~~le~~~~~i~~~m~eLK~~ 109 (123)
+.....+++++...+..+..++.++..++++
T Consensus 39 d~~I~eLEk~L~ekd~eI~~LqseLDKfrSV 69 (72)
T 3nmd_A 39 DALIDELELELDQKDELIQMLQNELDKYRSV 69 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 4445566666666666666666666655543
No 83
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=34.85 E-value=78 Score=26.11 Aligned_cols=35 Identities=17% Similarity=0.157 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040215 78 IEEMKEVNSKTLEKLEKEKETVLAQMNELKKILYG 112 (123)
Q Consensus 78 LE~~~e~~~~ei~~le~~~~~i~~~m~eLK~~LYa 112 (123)
|+.....+.++..+++.++.....++..++.+||.
T Consensus 8 l~~el~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~ 42 (412)
T 3u06_A 8 LSTEVVHLRQRTEELLRCNEQQAAELETCKEQLFQ 42 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555666666666666666666666665543
No 84
>2zdi_C Prefoldin subunit alpha; chaperone, cytoplasm; 3.00A {Pyrococcus horikoshii}
Probab=34.59 E-value=94 Score=21.61 Aligned_cols=41 Identities=20% Similarity=0.194 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hcC
Q 040215 75 EIRIEEMKEVNSKTLEKLEKEKETVLAQMNELKKILYG-KFR 115 (123)
Q Consensus 75 ~e~LE~~~e~~~~ei~~le~~~~~i~~~m~eLK~~LYa-KFG 115 (123)
.+.|+...+.++..+..+...+..+...|.++-....+ .||
T Consensus 107 i~~l~~~l~~l~~~l~~l~~~i~~~~~~l~~l~~~~~~~~~~ 148 (151)
T 2zdi_C 107 LKEYDEAIKKTQGALAELEKRIGEVARKAQEVQQKQSMTSFK 148 (151)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHTTTTTTCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 34445555577777777777777777777776655554 444
No 85
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=34.56 E-value=95 Score=21.93 Aligned_cols=9 Identities=33% Similarity=0.752 Sum_probs=3.5
Q ss_pred HHhhHHHHH
Q 040215 22 LNNRFHELE 30 (123)
Q Consensus 22 Ln~r~~~l~ 30 (123)
+|.|+.++.
T Consensus 37 vd~km~ei~ 45 (138)
T 3hnw_A 37 INNKITEFN 45 (138)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHHHH
Confidence 344444333
No 86
>2wg5_A General control protein GCN4, proteasome-activating nucleotidase; transcription hydrolase complex, nucleotide-binding; 2.10A {Saccharomyces cerevisiae} PDB: 2wg6_A
Probab=34.36 E-value=36 Score=23.04 Aligned_cols=37 Identities=30% Similarity=0.432 Sum_probs=18.1
Q ss_pred HhhHHHHHHHHHHHHHhhhhhhhhhhhh-hcCCCccceeeecce
Q 040215 23 NNRFHELEDEIKFAKETNDNLEDAGNEL-ILTDEDIVRFQIGEV 65 (123)
Q Consensus 23 n~r~~~l~~~l~~~k~~le~L~Da~~El-L~ddd~~i~ykiGe~ 65 (123)
|.|+..|+.+++.+++++..+.+ |+ ..- .+|+.||.|
T Consensus 6 ~~~~~~l~~~~~~l~~~i~~lke---el~~L~---~~P~~Vg~v 43 (109)
T 2wg5_A 6 HHRMKQLEDKVEELLSKNYHLEN---EVARLR---SPPLLVGVV 43 (109)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHH---HHHHHH---SCCEEEEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH---HHHHHh---CCCceEEEE
Confidence 45566666666666665544433 33 211 256666663
No 87
>3vlc_E Golgi to ER traffic protein 1; ATPase, membrane protein insertion, ATP binding, membrane PR binding; HET: ADP; 4.50A {Saccharomyces cerevisiae}
Probab=34.23 E-value=16 Score=24.98 Aligned_cols=30 Identities=30% Similarity=0.450 Sum_probs=24.6
Q ss_pred HHHhHHHHhHHhhHHHHHHHHHHHHHhhhh
Q 040215 13 QQNINKFSKLNNRFHELEDEIKFAKETNDN 42 (123)
Q Consensus 13 QqkIN~FsrLn~r~~~l~~~l~~~k~~le~ 42 (123)
|.-.-++++||.+++-+.++|+.+++.+..
T Consensus 52 QDEFAKWAKL~Rk~DKl~~ele~l~~~L~s 81 (94)
T 3vlc_E 52 QDNYAKWTKNNRKLDSLDKEINNLKDEIQS 81 (94)
T ss_dssp TTCHHHHHHHHHHHHHHHHHTTTHHHHTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455678899999999999999988877654
No 88
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=33.75 E-value=2.9e+02 Score=25.59 Aligned_cols=18 Identities=17% Similarity=0.231 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 040215 76 IRIEEMKEVNSKTLEKLE 93 (123)
Q Consensus 76 e~LE~~~e~~~~ei~~le 93 (123)
..|++.+..++..++.|+
T Consensus 1026 ~~L~~e~~~L~qq~~~l~ 1043 (1080)
T 2dfs_A 1026 SELKEQNTLLKTEKEELN 1043 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 334444444444444444
No 89
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=33.52 E-value=98 Score=25.33 Aligned_cols=32 Identities=22% Similarity=0.279 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040215 79 EEMKEVNSKTLEKLEKEKETVLAQMNELKKIL 110 (123)
Q Consensus 79 E~~~e~~~~ei~~le~~~~~i~~~m~eLK~~L 110 (123)
+.....++.+..+++.++..++.++.+|+..|
T Consensus 9 ~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~ 40 (403)
T 4etp_A 9 KEKIAALKEKIAALKEKIKDTELGMKELNEIL 40 (403)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444555555555555554444433
No 90
>2lw1_A ABC transporter ATP-binding protein UUP; ABC REG subfamily, DNA binding protein; NMR {Escherichia coli}
Probab=33.12 E-value=77 Score=20.39 Aligned_cols=25 Identities=28% Similarity=0.260 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 040215 80 EMKEVNSKTLEKLEKEKETVLAQMN 104 (123)
Q Consensus 80 ~~~e~~~~ei~~le~~~~~i~~~m~ 104 (123)
+..+.+..+|+.|+.++..++..|+
T Consensus 22 rEle~le~~Ie~LE~~i~~le~~la 46 (89)
T 2lw1_A 22 RELEQLPQLLEDLEAKLEALQTQVA 46 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3445666666666666666666664
No 91
>1r8e_A Multidrug-efflux transporter regulator; protein-DNA complex, MERR-family transcription activator, MU binding protein; HET: P4P; 2.40A {Bacillus subtilis} SCOP: a.6.1.3 d.60.1.1 PDB: 1exi_A* 1exj_A* 3iao_A 3q5p_A* 3d71_A* 3q3d_A* 3q1m_A* 3q2y_A* 3q5r_A* 3q5s_A* 3d70_A 3d6z_A* 3d6y_A* 1bow_A 2bow_A*
Probab=32.95 E-value=1.3e+02 Score=22.11 Aligned_cols=38 Identities=18% Similarity=0.142 Sum_probs=29.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040215 72 EEVEIRIEEMKEVNSKTLEKLEKEKETVLAQMNELKKI 109 (123)
Q Consensus 72 ~~a~e~LE~~~e~~~~ei~~le~~~~~i~~~m~eLK~~ 109 (123)
+.+.+.|....+.+++++..|+..+..++..+..++..
T Consensus 78 ~~~~~~l~~~~~~l~~~i~~l~~~~~~l~~~~~~~~~~ 115 (278)
T 1r8e_A 78 EELFAFYTEQERQIREKLDFLSALEQTISLVKKRMKRQ 115 (278)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 46677888888888888888888888888777766644
No 92
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=32.81 E-value=1.6e+02 Score=22.16 Aligned_cols=72 Identities=11% Similarity=0.124 Sum_probs=39.0
Q ss_pred HHhhHHHHHHHHHHHHHhhhhhhhhhhhh-hcCCCccceeeecceeeecChhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040215 22 LNNRFHELEDEIKFAKETNDNLEDAGNEL-ILTDEDIVRFQIGEVFAHVPREEVEIRIEEMKEVNSKTLEKLEKEKETVL 100 (123)
Q Consensus 22 Ln~r~~~l~~~l~~~k~~le~L~Da~~El-L~ddd~~i~ykiGe~Fv~~~~~~a~e~LE~~~e~~~~ei~~le~~~~~i~ 100 (123)
+..+...+...+..++.++..+-..|-|| ---+ .-.+.+++....+...+..|..+++..+
T Consensus 15 wk~~~~~~~q~~~~le~El~EFqesSrELE~ELE------------------~eL~~~Ek~~~~L~~~~~~L~~E~e~~k 76 (189)
T 2v71_A 15 WKELSMKYKQSFQEARDELVEFQEGSRELEAELE------------------AQLVQAEQRNRDLQADNQRLKYEVEALK 76 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455566667777777777777777777 3222 1233444444455555555555555555
Q ss_pred HHHHHHHHHHH
Q 040215 101 AQMNELKKILY 111 (123)
Q Consensus 101 ~~m~eLK~~LY 111 (123)
.+....++..|
T Consensus 77 ~K~~~~~~e~~ 87 (189)
T 2v71_A 77 EKLEHQYAQSY 87 (189)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 44444444433
No 93
>1vcs_A Vesicle transport through interaction with T- snares homolog 1A; HABC domain, VTI1, UP and DOWN three helix bundle, LEFT-handed twist; NMR {Mus musculus} SCOP: a.47.2.1
Probab=31.83 E-value=40 Score=22.47 Aligned_cols=27 Identities=15% Similarity=0.115 Sum_probs=22.9
Q ss_pred HhHHhhHHHHHHHHHHHHHhhhhhhhh
Q 040215 20 SKLNNRFHELEDEIKFAKETNDNLEDA 46 (123)
Q Consensus 20 srLn~r~~~l~~~l~~~k~~le~L~Da 46 (123)
+.+|+|+..++.++..++.++..+.+.
T Consensus 70 ~~~~~klr~Yk~dL~~lk~elk~~~~~ 96 (102)
T 1vcs_A 70 GMYSNRMRSYKQEMGKLETDFKRSRIA 96 (102)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 578999999999999999998876553
No 94
>3pp5_A BRK1, protein brick1; triple coiled-coil, precursor of the SCAR-WAVE complex, ABI, structural protein; 1.50A {Dictyostelium discoideum}
Probab=31.12 E-value=54 Score=21.30 Aligned_cols=29 Identities=28% Similarity=0.529 Sum_probs=16.2
Q ss_pred hHHHHh-HHhhHHHHHHHHHHHHHhhhhhh
Q 040215 16 INKFSK-LNNRFHELEDEIKFAKETNDNLE 44 (123)
Q Consensus 16 IN~Fsr-Ln~r~~~l~~~l~~~k~~le~L~ 44 (123)
+|+|+. --.|+..++..|..+...+.+|+
T Consensus 36 LN~F~~sce~KLa~ln~kL~~lE~~L~iLE 65 (73)
T 3pp5_A 36 LNKFELSTRNKLSDLNEKLTILDRQVDYLE 65 (73)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 366654 34555556666655555555554
No 95
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=30.71 E-value=74 Score=22.50 Aligned_cols=30 Identities=13% Similarity=0.138 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040215 78 IEEMKEVNSKTLEKLEKEKETVLAQMNELK 107 (123)
Q Consensus 78 LE~~~e~~~~ei~~le~~~~~i~~~m~eLK 107 (123)
+.+..+++..++..|+.++..+++++.+.|
T Consensus 108 ~~~e~~~l~~~~~~l~~~~~~le~~~~~~~ 137 (138)
T 3hnw_A 108 SAKEIKELKSEINKYQKNIVKLETELNDSK 137 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 344445666666666666666666665543
No 96
>2l5g_B Putative uncharacterized protein NCOR2, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=30.63 E-value=84 Score=18.40 Aligned_cols=34 Identities=18% Similarity=0.350 Sum_probs=26.8
Q ss_pred HhHHHHhHHhhHHHHHHHHHHHHHhhhhhhhhhh
Q 040215 15 NINKFSKLNNRFHELEDEIKFAKETNDNLEDAGN 48 (123)
Q Consensus 15 kIN~FsrLn~r~~~l~~~l~~~k~~le~L~Da~~ 48 (123)
.|-+..|.+....-.+.+|..+++.+..|+.++.
T Consensus 7 l~qkI~kVdrEI~Kte~kI~~lqkKlkeLee~a~ 40 (42)
T 2l5g_B 7 LIQNMDRVDREITMVEQQISKLKKKQQQLEEEAA 40 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 3555667777888888899999999999988763
No 97
>3okq_A BUD site selection protein 6; coiled-coil, protein binding; 2.04A {Saccharomyces cerevisiae} PDB: 3onx_A
Probab=30.46 E-value=1.4e+02 Score=21.67 Aligned_cols=43 Identities=7% Similarity=0.063 Sum_probs=36.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 040215 72 EEVEIRIEEMKEVNSKTLEKLEKEKETVLAQMNELKKILYGKF 114 (123)
Q Consensus 72 ~~a~e~LE~~~e~~~~ei~~le~~~~~i~~~m~eLK~~LYaKF 114 (123)
+....+++.-+.++..+.+.|-.++++++.-+..||+-.+-|.
T Consensus 6 ~~~R~y~~~~k~kL~~~sd~LvtkVDDLQD~VE~LRkDV~~Rg 48 (141)
T 3okq_A 6 SSNRMYMEKSQTELGDLSDTLLSKVDDLQDVIEIMRKDVAERR 48 (141)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred CCchHHHHHhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHcC
Confidence 3456678888999999999999999999999999998877653
No 98
>2ynz_A General control protein GCN4, putative inner MEMB protein; membrane protein, DALL domain, DALL2, trimeric autotransport adhesin, TAA; 1.40A {Saccharomyces cerevisiae} PDB: 1uo2_A 1gcl_A 2ccn_A 1uo0_A 1unz_A 1uny_A 2bni_A* 1u9h_A*
Probab=30.33 E-value=63 Score=23.82 Aligned_cols=29 Identities=14% Similarity=0.305 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040215 84 VNSKTLEKLEKEKETVLAQMNELKKILYG 112 (123)
Q Consensus 84 ~~~~ei~~le~~~~~i~~~m~eLK~~LYa 112 (123)
.++..|+++-+++=.|+.++..+.++||+
T Consensus 3 ~~~~~~~~~~~~~~~~~~~i~~~GSQL~~ 31 (154)
T 2ynz_A 3 QIEDKIEEILSKIYHIENEIARIKKLIYE 31 (154)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhhhHHHh
Confidence 35566777777788888888999999986
No 99
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=30.22 E-value=2e+02 Score=25.22 Aligned_cols=26 Identities=19% Similarity=0.219 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040215 87 KTLEKLEKEKETVLAQMNELKKILYG 112 (123)
Q Consensus 87 ~ei~~le~~~~~i~~~m~eLK~~LYa 112 (123)
+.|..|+.-++++..+|+.|=+..=+
T Consensus 131 snIrvLQsnLedq~~kIQRLEvDIdi 156 (562)
T 3ghg_A 131 QHIQLLQKNVRAQLVDMKRLEVDIDI 156 (562)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55666777777777777777665433
No 100
>2ihr_1 Peptide chain release factor 2; mixed alpha-beta, translation; 2.50A {Thermus thermophilus} PDB: 2b9m_Y* 3f1e_X 3f1g_X 2x9r_Y* 2x9t_Y* 2jl5_Y 2jl7_Y 2wh1_Y 2wh3_Y
Probab=30.18 E-value=15 Score=30.47 Aligned_cols=43 Identities=21% Similarity=0.284 Sum_probs=30.3
Q ss_pred cHHHHHHhHHHHhHHhhHHHHHHHHHHHHHhhhhhhhhhhhhh
Q 040215 9 TWEDQQNINKFSKLNNRFHELEDEIKFAKETNDNLEDAGNELI 51 (123)
Q Consensus 9 t~EDQqkIN~FsrLn~r~~~l~~~l~~~k~~le~L~Da~~ElL 51 (123)
-|.||.+..+.++=++.+..+-..++.++..++.+.++..+|+
T Consensus 38 ~w~d~~~~~~~~ke~~~l~~~v~~~~~~~~~~~d~~~~~e~l~ 80 (365)
T 2ihr_1 38 LWNDPEAARKVSQEAARLRRTVDTFRSLESDLQGLLELMEELP 80 (365)
T ss_dssp GTTTGGGSSSTTHHHHHTHHHHHHHHHHHHHTTTHHHHTTCSC
T ss_pred cccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4778887777777677777777777777777777777764454
No 101
>2r2v_A GCN4 leucine zipper; coiled coils, anti-parallel tetramer, protein design, de novo protein; HET: CIT; 1.90A {Saccharomyces cerevisiae} SCOP: h.1.3.1
Probab=30.12 E-value=77 Score=17.78 Aligned_cols=28 Identities=14% Similarity=0.220 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040215 83 EVNSKTLEKLEKEKETVLAQMNELKKIL 110 (123)
Q Consensus 83 e~~~~ei~~le~~~~~i~~~m~eLK~~L 110 (123)
.++...+++|-++...+..+...|+..|
T Consensus 4 nQledKvEel~~~~~~l~nEv~Rl~~lL 31 (34)
T 2r2v_A 4 KQVADKLEEVASKLYHNANELARVAKLL 31 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhHHHHHHHHHHHHHh
Confidence 4566667777777777777777777665
No 102
>1lrz_A FEMA, factor essential for expression of methicillin resistance; peptidoglycan, X-RAY crystallography, multiple anomalous dispersion; 2.10A {Staphylococcus aureus} SCOP: a.2.7.4 d.108.1.4 d.108.1.4
Probab=30.00 E-value=1.6e+02 Score=23.54 Aligned_cols=29 Identities=24% Similarity=0.280 Sum_probs=23.0
Q ss_pred eeecChhHHHHHHHHHHHHHHHHHHHHHH
Q 040215 66 FAHVPREEVEIRIEEMKEVNSKTLEKLEK 94 (123)
Q Consensus 66 Fv~~~~~~a~e~LE~~~e~~~~ei~~le~ 94 (123)
++.++.++..+.|+...+++.+++++++.
T Consensus 240 lA~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (426)
T 1lrz_A 240 LAYINFDEYIKELNEERDILNKDLNKALK 268 (426)
T ss_dssp EEEEEHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEecHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44677888888888888888888888853
No 103
>3da5_A Argonaute; PAZ domain, RNA binding, SH3-like barrel, RNA binding protein; 1.94A {Thermococcus thioreducens}
Probab=29.61 E-value=21 Score=25.16 Aligned_cols=16 Identities=44% Similarity=0.503 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHhcCC
Q 040215 101 AQMNELKKILYGKFRD 116 (123)
Q Consensus 101 ~~m~eLK~~LYaKFG~ 116 (123)
+.--++|...|.|||.
T Consensus 79 wntpe~k~efy~kfg~ 94 (128)
T 3da5_A 79 WNTPELKKEFYKKFGP 94 (128)
T ss_dssp SCSHHHHHHHHHHHCS
T ss_pred hCCHHHHHHHHHHcCC
Confidence 3346899999999995
No 104
>3a2a_A Voltage-gated hydrogen channel 1; voltage-gated proton channel, alternative splicing, coiled C transport, ionic channel, membrane, transmembrane; 2.00A {Homo sapiens}
Probab=28.55 E-value=1.1e+02 Score=19.02 Aligned_cols=42 Identities=19% Similarity=0.256 Sum_probs=34.0
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040215 70 PREEVEIRIEEMKEVNSKTLEKLEKEKETVLAQMNELKKILY 111 (123)
Q Consensus 70 ~~~~a~e~LE~~~e~~~~ei~~le~~~~~i~~~m~eLK~~LY 111 (123)
..+.-..+|-.....+-..|..|+..+.+.+.+...|.+.|-
T Consensus 8 Rse~q~~kLKq~n~~L~~kv~~Le~~c~e~eQEieRL~~LLk 49 (58)
T 3a2a_A 8 RSERQLLRLKQMNVQLAAKIQHLEFSCSEKEQEIERLNKLLR 49 (58)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344456778888889999999999999999999999988774
No 105
>1jcd_A Major outer membrane lipoprotein; protein folding, coiled coil, helix capping, alanine-zipper, membrane protein; 1.30A {Escherichia coli} SCOP: h.1.16.1 PDB: 1eq7_A 1t8z_A* 2guv_A 2gus_A 1jcc_A 1kfn_A 1kfm_A
Probab=28.37 E-value=1e+02 Score=18.60 Aligned_cols=29 Identities=7% Similarity=0.039 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040215 83 EVNSKTLEKLEKEKETVLAQMNELKKILY 111 (123)
Q Consensus 83 e~~~~ei~~le~~~~~i~~~m~eLK~~LY 111 (123)
..|...+..|..+++.+....+.|+...+
T Consensus 7 ~~Lss~V~~L~~kVdqLssdV~al~~~v~ 35 (52)
T 1jcd_A 7 DQASSDAQTANAKADQASNDANAARSDAQ 35 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556666666666666666666666554
No 106
>1lwu_C Fibrinogen gamma chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB: 1n73_C*
Probab=27.83 E-value=1.3e+02 Score=24.28 Aligned_cols=31 Identities=10% Similarity=0.183 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040215 78 IEEMKEVNSKTLEKLEKEKETVLAQMNELKK 108 (123)
Q Consensus 78 LE~~~e~~~~ei~~le~~~~~i~~~m~eLK~ 108 (123)
||.........|..|+..+...+.++.+|+.
T Consensus 17 ~e~~i~~~~~~i~~L~~~l~~~~~~i~~l~~ 47 (323)
T 1lwu_C 17 LEQIGVSHDAQIQELSEMWRVNQQFVTRLQQ 47 (323)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444455555555555555555555554
No 107
>1rq0_A RF-1, peptide chain release factor 1; X-RAY, crystal, peptide release factor 1, ribosome, structural genomics, BSGC structure funded by NIH; 2.65A {Thermotoga maritima} SCOP: e.38.1.1 PDB: 2fvo_A
Probab=27.80 E-value=1.5e+02 Score=24.22 Aligned_cols=35 Identities=14% Similarity=0.254 Sum_probs=18.8
Q ss_pred HHHHhHHHHhHHhhHHHHHHHHHHHHHhhhhhhhhhhhhh
Q 040215 12 DQQNINKFSKLNNRFHELEDEIKFAKETNDNLEDAGNELI 51 (123)
Q Consensus 12 DQqkIN~FsrLn~r~~~l~~~l~~~k~~le~L~Da~~ElL 51 (123)
||.+..+.++=++.+..+-..+...+ .++|+. +|+
T Consensus 18 d~~~~~~~~ke~~~l~~~v~~~~~~~----~~~~~~-~l~ 52 (342)
T 1rq0_A 18 TPEQMKNYGMEYAKIEEIENITNRIK----ETQEFI-ELL 52 (342)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHH-TTT
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHH----hHHHHH-HHH
Confidence 66666555555555555555555544 555554 444
No 108
>1yf2_A Type I restriction-modification enzyme, S subunit; structura genomics, PSI, protein structure initiative; 2.40A {Methanocaldococcus jannaschii} SCOP: d.287.1.2 d.287.1.2
Probab=27.46 E-value=1.6e+02 Score=22.31 Aligned_cols=48 Identities=19% Similarity=0.264 Sum_probs=37.7
Q ss_pred ecceeeecChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 040215 62 IGEVFAHVPREEVEIRIEEMKEVNSKTLEKLEKEKETVLAQMNELKKILYGK 113 (123)
Q Consensus 62 iGe~Fv~~~~~~a~e~LE~~~e~~~~ei~~le~~~~~i~~~m~eLK~~LYaK 113 (123)
+...-|.+|.-+-|.++......+++.++.++.+++. +.+||..|-.+
T Consensus 368 l~~~~i~lPpl~eQ~~I~~~l~~ld~~i~~~~~~~~~----l~~~k~~Ll~~ 415 (425)
T 1yf2_A 368 LENFKIPLPPLEEQKQIAKILSSVDKSIELKKQKKEK----LQRMKKKIMEL 415 (425)
T ss_dssp HHHCEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHH
T ss_pred HhcCeecCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHH
Confidence 5666788888888999999888999888888877754 56677776655
No 109
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=27.41 E-value=3.7e+02 Score=28.39 Aligned_cols=42 Identities=10% Similarity=0.043 Sum_probs=35.5
Q ss_pred cChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040215 69 VPREEVEIRIEEMKEVNSKTLEKLEKEKETVLAQMNELKKIL 110 (123)
Q Consensus 69 ~~~~~a~e~LE~~~e~~~~ei~~le~~~~~i~~~m~eLK~~L 110 (123)
-|...+...+++.....++++.++++++.+++.++..||..+
T Consensus 2010 ~Pkr~~l~~ae~~l~~~~~~L~~~~~~L~~le~~l~~L~~~~ 2051 (3245)
T 3vkg_A 2010 GPLREEVEQLENAANELKLKQDEIVATITALEKSIATYKEEY 2051 (3245)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 788888888888888888899999999999999998888654
No 110
>1q08_A Zn(II)-responsive regulator of ZNTA; MERR family transcriptional regulator; 1.90A {Escherichia coli} SCOP: a.6.1.3 PDB: 1q09_A 1q0a_A
Probab=27.35 E-value=1.2e+02 Score=19.02 Aligned_cols=33 Identities=9% Similarity=0.055 Sum_probs=19.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040215 71 REEVEIRIEEMKEVNSKTLEKLEKEKETVLAQM 103 (123)
Q Consensus 71 ~~~a~e~LE~~~e~~~~ei~~le~~~~~i~~~m 103 (123)
.......|+.....++.++..|+.....+...+
T Consensus 37 ~~~~~~~L~~~~~~l~~~i~~L~~~~~~L~~~~ 69 (99)
T 1q08_A 37 CQESKGIVQERLQEVEARIAELQSMQRSLQRLN 69 (99)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566666666666666666655555554433
No 111
>2e62_A Protein AT5G25060; CWF21 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Arabidopsis thaliana}
Probab=26.36 E-value=1e+02 Score=19.30 Aligned_cols=21 Identities=14% Similarity=0.050 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHHHHhcCC
Q 040215 96 KETVLAQMNELKKILYGKFRD 116 (123)
Q Consensus 96 ~~~i~~~m~eLK~~LYaKFG~ 116 (123)
-.+|..+-..+++.|.+.+|=
T Consensus 40 ~~eI~~kV~~~RkkL~~~~~~ 60 (61)
T 2e62_A 40 PEEIERKVEINRKRLEVDYGL 60 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHhcCC
Confidence 467899999999999999883
No 112
>4dyl_A Tyrosine-protein kinase FES/FPS; structural genomics, structural genomics consortium, BCR, CR associated substrate, transferase; 2.18A {Homo sapiens}
Probab=26.27 E-value=1.7e+02 Score=23.53 Aligned_cols=83 Identities=12% Similarity=0.097 Sum_probs=43.2
Q ss_pred HHHHhHHhhHHHHHHHHHHHHHhhhhhhhhhhhh-hcCCCccceeeecceeeecChhHHHHHHHHHHHHHHHHHHHHHHH
Q 040215 17 NKFSKLNNRFHELEDEIKFAKETNDNLEDAGNEL-ILTDEDIVRFQIGEVFAHVPREEVEIRIEEMKEVNSKTLEKLEKE 95 (123)
Q Consensus 17 N~FsrLn~r~~~l~~~l~~~k~~le~L~Da~~El-L~ddd~~i~ykiGe~Fv~~~~~~a~e~LE~~~e~~~~ei~~le~~ 95 (123)
|+.+++...+.++...+..+..+++.|.-..... -.-+-..-.+.++ .-.+...+-.....+.-.-.+|..+
T Consensus 309 ~~L~~~~~~l~~~~~~~~~k~~~v~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~e~~~~~~~~~~~~~~~~~q 381 (406)
T 4dyl_A 309 HTLTSVTDELAVATEMVFRRQEMVTQLQQELRNEEENTHPRERVQLLG-------KRQVLQEALQGLQVALCSQAKLQAQ 381 (406)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCTTCGGGGHH-------HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcchHHHHHh-------HHhhHHHHHHHHHHHHhHHHHHHHH
Confidence 5677777777777777777777777776655544 3222100022233 3333333333334444444555555
Q ss_pred HHHHHHHHHHH
Q 040215 96 KETVLAQMNEL 106 (123)
Q Consensus 96 ~~~i~~~m~eL 106 (123)
.+-|+..|++|
T Consensus 382 ~~~~~~~~~~~ 392 (406)
T 4dyl_A 382 QELLQTKLEHL 392 (406)
T ss_dssp HHHHHHHHHTT
T ss_pred HHHHHHHHHhc
Confidence 55555555543
No 113
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=26.18 E-value=1.1e+02 Score=18.27 Aligned_cols=29 Identities=14% Similarity=0.149 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040215 82 KEVNSKTLEKLEKEKETVLAQMNELKKIL 110 (123)
Q Consensus 82 ~e~~~~ei~~le~~~~~i~~~m~eLK~~L 110 (123)
...++.++..|+.+-..+..++..|+..+
T Consensus 24 ~~~Le~~~~~L~~~n~~L~~~i~~L~~e~ 52 (61)
T 1t2k_D 24 VQSLEKKAEDLSSLNGQLQSEVTLLRNEV 52 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556666666666666666666665543
No 114
>2xdj_A Uncharacterized protein YBGF; unknown function; 1.82A {Escherichia coli} PDB: 2wz7_A
Probab=25.96 E-value=1.4e+02 Score=19.42 Aligned_cols=39 Identities=10% Similarity=0.180 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHhc
Q 040215 76 IRIEEMKEVNSKTLEKLEKEKETVLAQMNELKK---ILYGKF 114 (123)
Q Consensus 76 e~LE~~~e~~~~ei~~le~~~~~i~~~m~eLK~---~LYaKF 114 (123)
-.|-...+.++.+|..|...++...-+++.|+. .+|.-.
T Consensus 23 ~~Lq~Ql~~Lq~Ev~~LRGqiE~~~~~l~ql~~rQrd~Y~dL 64 (83)
T 2xdj_A 23 TQLQQQLSDNQSDIDSLRGQIQENQYQLNQVVERQKQILLQI 64 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555668888888888888999888888888 677543
No 115
>3htk_A Structural maintenance of chromosomes protein 5; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=25.96 E-value=1e+02 Score=17.98 Aligned_cols=31 Identities=6% Similarity=0.042 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040215 79 EEMKEVNSKTLEKLEKEKETVLAQMNELKKI 109 (123)
Q Consensus 79 E~~~e~~~~ei~~le~~~~~i~~~m~eLK~~ 109 (123)
......+...+..+.+.+..+...+..+|.+
T Consensus 25 ~~~~~~~k~~~~~~~~~l~~~~~~I~~~k~q 55 (60)
T 3htk_A 25 TDEFLKAKEKINEIFEKLNTIRDEVIKKKNQ 55 (60)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344455555666666666666666666544
No 116
>1x8y_A Lamin A/C; structural protein, intermediate filament protein; 2.20A {Homo sapiens} SCOP: h.1.20.1 PDB: 3v5b_A 3v4w_A 3v4q_A
Probab=25.85 E-value=1.4e+02 Score=19.25 Aligned_cols=34 Identities=18% Similarity=0.342 Sum_probs=22.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040215 72 EEVEIRIEEMKEVNSKTLEKLEKEKETVLAQMNE 105 (123)
Q Consensus 72 ~~a~e~LE~~~e~~~~ei~~le~~~~~i~~~m~e 105 (123)
.+++.+.+...+.++..|..++.++..++..|..
T Consensus 20 ~e~E~~~~~~l~~~q~~i~~lE~el~~~r~e~~~ 53 (86)
T 1x8y_A 20 RDLEDSLARERDTSRRLLAEKEREMAEMRARMQQ 53 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455566666667777777777777776666653
No 117
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=25.41 E-value=1.6e+02 Score=19.98 Aligned_cols=31 Identities=19% Similarity=0.177 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040215 81 MKEVNSKTLEKLEKEKETVLAQMNELKKILY 111 (123)
Q Consensus 81 ~~e~~~~ei~~le~~~~~i~~~m~eLK~~LY 111 (123)
....+..+|+.|+.+.+.+..+...|...|=
T Consensus 13 ~~~~lr~ei~~Le~E~~rLr~~~~~LE~~Le 43 (100)
T 1go4_E 13 EADTLRLKVEELEGERSRLEEEKRMLEAQLE 43 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3446777778888888888888777777763
No 118
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=24.87 E-value=1.9e+02 Score=23.60 Aligned_cols=40 Identities=20% Similarity=0.093 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040215 71 REEVEIRIEEMKEVNSKTLEKLEKEKETVLAQMNELKKIL 110 (123)
Q Consensus 71 ~~~a~e~LE~~~e~~~~ei~~le~~~~~i~~~m~eLK~~L 110 (123)
..+..+...+..+.+++++.+++..++..+.++.+||..+
T Consensus 528 ~~~~~~~~~~~~~~~~~~~~~le~~~~~~~~~~~~l~~e~ 567 (597)
T 3oja_B 528 RRTEADAKQKETEDLEQENIALEKQLDNKRAKQAELRQET 567 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhhhhhcchhhHHhhhHHHHHHHhhhhhHHHHHHHHH
No 119
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=24.62 E-value=2e+02 Score=20.86 Aligned_cols=36 Identities=17% Similarity=0.261 Sum_probs=28.0
Q ss_pred HhHHHHhHHhhHHHHHHHHHHHHHhhhhhhhhhhhh
Q 040215 15 NINKFSKLNNRFHELEDEIKFAKETNDNLEDAGNEL 50 (123)
Q Consensus 15 kIN~FsrLn~r~~~l~~~l~~~k~~le~L~Da~~El 50 (123)
-||+-|.|--.+.....++...+.....|+.+..++
T Consensus 11 Ain~qs~LeD~L~~~R~el~~~~~ri~~lE~~r~~~ 46 (154)
T 2ocy_A 11 SVDKQSHLEEQLNKSLKTIASQKAAIENYNQLKEDY 46 (154)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHH
T ss_pred HHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 477777777778888888887777777888877777
No 120
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=24.56 E-value=1.4e+02 Score=18.76 Aligned_cols=45 Identities=9% Similarity=0.091 Sum_probs=33.6
Q ss_pred ecChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040215 68 HVPREEVEIRIEEMKEVNSKTLEKLEKEKETVLAQMNELKKILYG 112 (123)
Q Consensus 68 ~~~~~~a~e~LE~~~e~~~~ei~~le~~~~~i~~~m~eLK~~LYa 112 (123)
.++.-.+...--.....++.++..++.+++.+..+...|+..|=+
T Consensus 35 k~sK~~iL~~Ai~YI~~L~~~~~~l~~e~~~L~~~~~~L~~~l~~ 79 (83)
T 1nkp_B 35 KASRAQILDKATEYIQYMRRKNHTHQQDIDDLKRQNALLEQQVRA 79 (83)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355555555555566688888888889999999998888887743
No 121
>2r32_A GCN4-PII/tumor necrosis factor ligand superfamily member 18 fusion protein; gitrl, glucocorticoid-induced TNF receptor ligand, cytokine; 1.95A {Saccharomyces cerevisiae} SCOP: b.22.1.1 PDB: 1ce0_A 3f86_A* 3f87_A*
Probab=24.39 E-value=55 Score=24.33 Aligned_cols=42 Identities=19% Similarity=0.168 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHhcCC
Q 040215 75 EIRIEEMKEVNSKTLEKLEKEKETVLAQMNELKKIL---YGKFRD 116 (123)
Q Consensus 75 ~e~LE~~~e~~~~ei~~le~~~~~i~~~m~eLK~~L---YaKFG~ 116 (123)
..++|...+++-+.|=.++.++..|+.-+.+||+.- -||||-
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ta~e~c~~kf~~ 53 (166)
T 2r32_A 9 MKQIEDKIEEILSKIYHIENEIARIKKLIGERETAKEPCMAKFGP 53 (166)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHC---------CCEEEECS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccchhhhcCc
Confidence 345666677777778888888888888888888764 466663
No 122
>1r8d_A Transcription activator MTAN; protein-DNA complex, transcription/DNA complex; 2.70A {Bacillus subtilis} SCOP: a.6.1.3 PDB: 1jbg_A
Probab=24.35 E-value=94 Score=20.20 Aligned_cols=27 Identities=15% Similarity=0.247 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040215 75 EIRIEEMKEVNSKTLEKLEKEKETVLA 101 (123)
Q Consensus 75 ~e~LE~~~e~~~~ei~~le~~~~~i~~ 101 (123)
...|+...+.+.+++..|+..+..+..
T Consensus 77 ~~~l~~~~~~l~~~i~~l~~~~~~l~~ 103 (109)
T 1r8d_A 77 KAALQSQKEILMKKKQRMDEMIQTIDR 103 (109)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555566665555555555444
No 123
>3hh0_A Transcriptional regulator, MERR family; protein structure initiative II(PSI II), NYSGXRC, 11183J, structural genomics; 2.67A {Bacillus cereus atcc 14579}
Probab=24.30 E-value=1.6e+02 Score=20.42 Aligned_cols=37 Identities=14% Similarity=0.075 Sum_probs=26.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040215 71 REEVEIRIEEMKEVNSKTLEKLEKEKETVLAQMNELK 107 (123)
Q Consensus 71 ~~~a~e~LE~~~e~~~~ei~~le~~~~~i~~~m~eLK 107 (123)
.+.....|....+.+.+++..++.-++.++..+..++
T Consensus 78 ~~~~~~~L~~q~~~L~~~i~~l~~~l~~l~~~i~~~~ 114 (146)
T 3hh0_A 78 TEVFLRQMHFQREVLLAEQERIAKVLSHMDEMTKKFQ 114 (146)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4556667777778888888888877777777665543
No 124
>3trt_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural protein; 2.30A {Homo sapiens} PDB: 3klt_A*
Probab=24.19 E-value=1.3e+02 Score=18.47 Aligned_cols=38 Identities=11% Similarity=0.035 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040215 73 EVEIRIEEMKEVNSKTLEKLEKEKETVLAQMNELKKIL 110 (123)
Q Consensus 73 ~a~e~LE~~~e~~~~ei~~le~~~~~i~~~m~eLK~~L 110 (123)
+|..+.....+.+...+..-...+...+.++.+|+..+
T Consensus 28 EaE~~y~~k~eel~~~~~~~~~~l~~~k~Ei~elrr~i 65 (77)
T 3trt_A 28 EAEEWYKSKFADLSEAANRNNDALRQAKQESTEYRRQV 65 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 34444444444455555555555555555555555443
No 125
>1zme_C Proline utilization transcription activator; complex (transcription regulation/DNA), PUT3, Zn2Cys6, binuclear cluster; HET: DNA 5IU; 2.50A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1 PDB: 1ajy_A
Probab=23.98 E-value=1e+02 Score=18.04 Aligned_cols=14 Identities=21% Similarity=0.238 Sum_probs=5.5
Q ss_pred HHHHHHHHHHHHHH
Q 040215 85 NSKTLEKLEKEKET 98 (123)
Q Consensus 85 ~~~ei~~le~~~~~ 98 (123)
++.++..|+..+..
T Consensus 49 L~~ri~~Le~~l~~ 62 (70)
T 1zme_C 49 LQKDLNDKTEENNR 62 (70)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 33344444443333
No 126
>3p8c_E Probable protein brick1; actin polymerization, protein binding; 2.29A {Homo sapiens}
Probab=23.65 E-value=1.2e+02 Score=19.72 Aligned_cols=29 Identities=17% Similarity=0.378 Sum_probs=16.2
Q ss_pred hHHHHh-HHhhHHHHHHHHHHHHHhhhhhh
Q 040215 16 INKFSK-LNNRFHELEDEIKFAKETNDNLE 44 (123)
Q Consensus 16 IN~Fsr-Ln~r~~~l~~~l~~~k~~le~L~ 44 (123)
.|+|+. --.|+..++.+|..+...+.+|+
T Consensus 36 LN~F~~sce~KLa~ln~KL~~LEr~L~iLE 65 (75)
T 3p8c_E 36 LNSFDMSCRSRLATLNEKLTALERRIEYIE 65 (75)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455554 34555566666666655555554
No 127
>1ezj_A Nucleocapsid phosphoprotein; four stranded coiled coil, viral polymerase, T viral protein, transferase; 1.90A {Sendai virus} SCOP: h.1.14.1
Probab=23.63 E-value=1.3e+02 Score=20.86 Aligned_cols=30 Identities=7% Similarity=0.335 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 040215 84 VNSKTLEKLEKEKETVLAQMNELKKILYGKF 114 (123)
Q Consensus 84 ~~~~ei~~le~~~~~i~~~m~eLK~~LYaKF 114 (123)
.+...+++-...+..|+.+|..+| .+|.||
T Consensus 63 ~~~~kv~en~~~L~QIQ~ei~s~r-d~hkR~ 92 (115)
T 1ezj_A 63 SSARKVDENKQLLKQIQESVESFR-DIYKRF 92 (115)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHH
T ss_pred hhhhhhhhhHHHHHHHHHHHHHHH-HHHHHH
Confidence 344566677777888888888888 788877
No 128
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1
Probab=23.33 E-value=1.5e+02 Score=18.86 Aligned_cols=29 Identities=14% Similarity=0.106 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040215 82 KEVNSKTLEKLEKEKETVLAQMNELKKIL 110 (123)
Q Consensus 82 ~e~~~~ei~~le~~~~~i~~~m~eLK~~L 110 (123)
...++.+...+..+.+.+..+...|+..|
T Consensus 49 I~~L~~~~~~l~~e~~~L~~e~~~L~~~L 77 (80)
T 1nlw_A 49 IKKLEDSDRKAVHQIDQLQREQRHLKRQL 77 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33666677777777777777777777765
No 129
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=23.24 E-value=1.6e+02 Score=22.08 Aligned_cols=37 Identities=16% Similarity=0.235 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040215 73 EVEIRIEEMKEVNSKTLEKLEKEKETVLAQMNELKKI 109 (123)
Q Consensus 73 ~a~e~LE~~~e~~~~ei~~le~~~~~i~~~m~eLK~~ 109 (123)
+....||+..+.+++....|..++..+..+...+|..
T Consensus 42 ELE~ELE~eL~~~Ek~~~~L~~~~~~L~~E~e~~k~K 78 (189)
T 2v71_A 42 ELEAELEAQLVQAEQRNRDLQADNQRLKYEVEALKEK 78 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555555555555555555555555555543
No 130
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=23.24 E-value=1.7e+02 Score=19.35 Aligned_cols=70 Identities=17% Similarity=0.241 Sum_probs=42.0
Q ss_pred HHHHHHHHHHHHHhhhhhhhhhhhh-hcCCCccceeeecceeeecChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040215 26 FHELEDEIKFAKETNDNLEDAGNEL-ILTDEDIVRFQIGEVFAHVPREEVEIRIEEMKEVNSKTLEKLEKEKETVLAQMN 104 (123)
Q Consensus 26 ~~~l~~~l~~~k~~le~L~Da~~El-L~ddd~~i~ykiGe~Fv~~~~~~a~e~LE~~~e~~~~ei~~le~~~~~i~~~m~ 104 (123)
++.++..+..++.++++..|-+..+ ---. ..+.....++.....++..+..++.+++.....+.
T Consensus 4 MdaIKkKm~~lk~e~e~a~drae~~e~~~k---------------~~e~~~~~~E~Ei~sL~kk~~~lE~eld~~ee~L~ 68 (101)
T 3u1c_A 4 MDAIKKKMQMLKLDKENALDRAEQAEADKK---------------AAEERSKQLEDDIVQLEKQLRVTEDSRDQVLEELH 68 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567777777887777766666554 1000 01334455666666666666666666666666666
Q ss_pred HHHHHH
Q 040215 105 ELKKIL 110 (123)
Q Consensus 105 eLK~~L 110 (123)
+.+..|
T Consensus 69 ea~~kL 74 (101)
T 3u1c_A 69 KSEDSL 74 (101)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 665544
No 131
>3hhm_B NISH2 P85alpha; PI3KCA, PI3K, PIK3R1, phosphatidilynositol 3,4,5- triphosphate, wortmannin, H1047R, ATP-binding, disease mutation, kinase; HET: KWT; 2.80A {Homo sapiens} PDB: 3hiz_B 2rd0_B 4a55_B* 3mtt_A
Probab=23.04 E-value=2e+02 Score=23.45 Aligned_cols=99 Identities=16% Similarity=0.245 Sum_probs=51.2
Q ss_pred HHHHhHHHHhHHhhHHHHHHHHHHHHHhhhhhhhhhhhhhcCCCccceeeec----ceee-----------ecChhHHHH
Q 040215 12 DQQNINKFSKLNNRFHELEDEIKFAKETNDNLEDAGNELILTDEDIVRFQIG----EVFA-----------HVPREEVEI 76 (123)
Q Consensus 12 DQqkIN~FsrLn~r~~~l~~~l~~~k~~le~L~Da~~ElL~ddd~~i~ykiG----e~Fv-----------~~~~~~a~e 76 (123)
=|.+.+.|-+|...+.....++..+++-++.+..|.- |..+-...+=+.. +-|- ..+.+....
T Consensus 135 ~~~~~~~~~~~~~~~~~~~~e~~~k~~a~~af~~~~~--~f~~q~~~~e~~~~~~~~~~~~~~~~~e~~~~~~n~~~l~~ 212 (373)
T 3hhm_B 135 FQEKSREYDRLYEEYTRTSQEIQMKRTAIEAFNETIK--IFEEQCQTQERYSKEYIEKFKREGNEKEIQRIMHNYDKLKS 212 (373)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHTTTTCCSHHHHHHHHHHHHHH
T ss_pred HHhcccHHHHHHHHhccchHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHhhhhhhhhhhhcChHHHHHHHHhHHHHHH
Confidence 3456777778888888888888877777665544321 2211000000000 0111 111112222
Q ss_pred H---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040215 77 R---IEEMKEVNSKTLEKLEKEKETVLAQMNELKKILYG 112 (123)
Q Consensus 77 ~---LE~~~e~~~~ei~~le~~~~~i~~~m~eLK~~LYa 112 (123)
+ |...+.+++..+..-....-+++.+|+.||-.|+.
T Consensus 213 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~lkp~l~q 251 (373)
T 3hhm_B 213 RISEIIDSRRRLEEDLKKQAAEYREIDKRMNSIKPDLIQ 251 (373)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccChHHHH
Confidence 2 23444555555666566666788888888877653
No 132
>3iv1_A Tumor susceptibility gene 101 protein; coiled_COIL, tumorigenesis, CELL_cycle regulation, alternative splicing, cell cycle, cell division; HET: MSE; 2.50A {Homo sapiens}
Probab=23.03 E-value=1.6e+02 Score=19.16 Aligned_cols=32 Identities=22% Similarity=0.297 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040215 76 IRIEEMKEVNSKTLEKLEKEKETVLAQMNELK 107 (123)
Q Consensus 76 e~LE~~~e~~~~ei~~le~~~~~i~~~m~eLK 107 (123)
..|+.....++.+...++..+..++.+-.+|.
T Consensus 42 ~KL~~mi~~l~~E~~~l~~ni~~lk~K~~EL~ 73 (78)
T 3iv1_A 42 QKLEEMVTRLDQEVAEVDKNIELLKKKDEELS 73 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555555555555555555555554
No 133
>3cqx_C BAG family molecular chaperone regulator 2; protein-protein complex, ATP-binding, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; 2.30A {Mus musculus} PDB: 3d0t_A
Probab=22.66 E-value=36 Score=22.98 Aligned_cols=13 Identities=31% Similarity=0.432 Sum_probs=10.7
Q ss_pred ccccHHHHHHhHH
Q 040215 6 TVVTWEDQQNINK 18 (123)
Q Consensus 6 veVt~EDQqkIN~ 18 (123)
+.-|.+||+||.+
T Consensus 59 i~CtlDDQKkIkk 71 (88)
T 3cqx_C 59 IGCALEDQKKIKR 71 (88)
T ss_dssp HTSCHHHHHHHHH
T ss_pred hcccHhhHHHHHH
Confidence 3568999999976
No 134
>1uii_A Geminin; human, DNA replication, cell cycle; 2.00A {Homo sapiens} SCOP: h.1.28.1
Probab=22.21 E-value=1.7e+02 Score=19.32 Aligned_cols=25 Identities=20% Similarity=0.226 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 040215 84 VNSKTLEKLEKEKETVLAQMNELKK 108 (123)
Q Consensus 84 ~~~~ei~~le~~~~~i~~~m~eLK~ 108 (123)
.+-..|+.+++++..++.+..+||.
T Consensus 50 ~Lh~~ie~l~eEi~~lk~en~eL~e 74 (83)
T 1uii_A 50 KLHKEIEQKDNEIARLKKENKELAE 74 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555666666666666666666653
No 135
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=22.10 E-value=1.4e+02 Score=17.92 Aligned_cols=30 Identities=10% Similarity=0.155 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040215 81 MKEVNSKTLEKLEKEKETVLAQMNELKKIL 110 (123)
Q Consensus 81 ~~e~~~~ei~~le~~~~~i~~~m~eLK~~L 110 (123)
....++.++..|+.+-..+..++..|...+
T Consensus 23 ~~~~Le~~v~~L~~~n~~L~~~v~~L~~e~ 52 (62)
T 1jnm_A 23 RIARLEEKVKTLKAQNSELASTANMLREQV 52 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666677777777777777777766554
No 136
>1q1v_A DEK protein; winged-helix motif, DNA binding protein; NMR {Homo sapiens} SCOP: a.159.4.1
Probab=21.83 E-value=56 Score=20.62 Aligned_cols=17 Identities=24% Similarity=0.548 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHhc-CCCCCc
Q 040215 102 QMNELKKILYGKF-RDSINL 120 (123)
Q Consensus 102 ~m~eLK~~LYaKF-G~~INL 120 (123)
-++..+.+|+.+| | ++|
T Consensus 34 T~K~VR~~Le~~~pg--~dL 51 (70)
T 1q1v_A 34 TMKQICKKVYENYPT--YDL 51 (70)
T ss_dssp CHHHHHHHHHHHCSS--SCC
T ss_pred hHHHHHHHHHHHccC--CCC
Confidence 4577999999999 5 554
No 137
>4e61_A Protein BIM1; EB1-like motif, coiled-coil, spindle orientation, mitosis, K phosphorylation, mitotic spindle, microtubules, cell cycle; 2.45A {Saccharomyces cerevisiae}
Probab=21.83 E-value=1.9e+02 Score=19.88 Aligned_cols=24 Identities=21% Similarity=0.297 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 040215 84 VNSKTLEKLEKEKETVLAQMNELK 107 (123)
Q Consensus 84 ~~~~ei~~le~~~~~i~~~m~eLK 107 (123)
..+.++..|..++.+++..+..|.
T Consensus 15 ~~~~ei~~L~~ei~eLk~~ve~lE 38 (106)
T 4e61_A 15 KSQETIGSLNEEIEQYKGTVSTLE 38 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445555555555555555544
No 138
>1yf2_A Type I restriction-modification enzyme, S subunit; structura genomics, PSI, protein structure initiative; 2.40A {Methanocaldococcus jannaschii} SCOP: d.287.1.2 d.287.1.2
Probab=21.73 E-value=2.6e+02 Score=21.04 Aligned_cols=51 Identities=16% Similarity=0.128 Sum_probs=36.9
Q ss_pred ecceeeecChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040215 62 IGEVFAHVPREEVEIRIEEMKEVNSKTLEKLEKEKETVLAQMNELKKILYG 112 (123)
Q Consensus 62 iGe~Fv~~~~~~a~e~LE~~~e~~~~ei~~le~~~~~i~~~m~eLK~~LYa 112 (123)
+...-|.+|.-+-|.++-+-...+++.++.++..++.++..-+.|=..+..
T Consensus 158 l~~~~i~lPpl~EQ~~I~~~l~~ld~~i~~~~~~i~~l~~~k~~l~~~~~~ 208 (425)
T 1yf2_A 158 VKSFKIPLPPLEEQKQIAKILTKIDEGIEIIEKSINKLERIKKGLMHKLLT 208 (425)
T ss_dssp HHTCEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhcCccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 667778888888899998888888888888887776665544444444443
No 139
>3viq_B Mating-type switching protein SWI5; recombination activator; 2.20A {Schizosaccharomyces pombe} PDB: 3vir_A*
Probab=21.56 E-value=1.1e+02 Score=20.36 Aligned_cols=26 Identities=23% Similarity=0.268 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040215 76 IRIEEMKEVNSKTLEKLEKEKETVLA 101 (123)
Q Consensus 76 e~LE~~~e~~~~ei~~le~~~~~i~~ 101 (123)
+.|+...+.++.++..|+.++.....
T Consensus 4 ~~L~~~i~~L~~q~~~L~~ei~~~~a 29 (85)
T 3viq_B 4 SQLESRVHLLEQQKEQLESSLQDALA 29 (85)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555666666666666655544
No 140
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=21.43 E-value=2e+02 Score=19.61 Aligned_cols=31 Identities=26% Similarity=0.336 Sum_probs=20.1
Q ss_pred HHhHHhhHHHHHHHHHHHHHhhhhhhhhhhh
Q 040215 19 FSKLNNRFHELEDEIKFAKETNDNLEDAGNE 49 (123)
Q Consensus 19 FsrLn~r~~~l~~~l~~~k~~le~L~Da~~E 49 (123)
.+.++..+..|+.+|..++.....|+....|
T Consensus 40 i~elrr~iq~L~~el~~l~~~~~sLE~~l~e 70 (131)
T 3tnu_A 40 ISELRRTMQNLEIELQSQLSMKASLENSLEE 70 (131)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 4566677777777777777776666655433
No 141
>2pjw_V Vacuolar protein sorting-associated protein 27; GAT domain, core complex, doamin SWAP, endocytosis/exocytosis complex; 3.01A {Saccharomyces cerevisiae}
Probab=21.23 E-value=75 Score=21.22 Aligned_cols=22 Identities=18% Similarity=0.332 Sum_probs=18.0
Q ss_pred ccccHHHHHHhHHHHhHHhhHH
Q 040215 6 TVVTWEDQQNINKFSKLNNRFH 27 (123)
Q Consensus 6 veVt~EDQqkIN~FsrLn~r~~ 27 (123)
.++|..|=..||.||.|-.|+.
T Consensus 1 ~dLt~~e~d~I~lF~~lv~~~k 22 (91)
T 2pjw_V 1 VDLSDEEKDSIYMFASLVEKMK 22 (91)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHHHHHH
Confidence 3678889999999999977654
No 142
>1gk4_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, stutter; 2.3A {Homo sapiens} SCOP: h.1.20.1
Probab=21.16 E-value=1.7e+02 Score=18.63 Aligned_cols=33 Identities=18% Similarity=0.233 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040215 73 EVEIRIEEMKEVNSKTLEKLEKEKETVLAQMNE 105 (123)
Q Consensus 73 ~a~e~LE~~~e~~~~ei~~le~~~~~i~~~m~e 105 (123)
++..+.+......+..|..++.++..++..|..
T Consensus 19 e~e~~~~~~~~~~q~~i~~lE~eL~~~r~e~~~ 51 (84)
T 1gk4_A 19 EMEENFAVEAANYQDTIGRLQDEIQNMKEEMAR 51 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555556666666666666666666666643
No 143
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=21.14 E-value=1.5e+02 Score=17.92 Aligned_cols=26 Identities=23% Similarity=0.369 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040215 83 EVNSKTLEKLEKEKETVLAQMNELKK 108 (123)
Q Consensus 83 e~~~~ei~~le~~~~~i~~~m~eLK~ 108 (123)
..++.+++.|+.+-..+..++..|+.
T Consensus 26 ~~Le~~v~~L~~~n~~L~~ei~~L~~ 51 (63)
T 2wt7_A 26 DTLQAETDQLEDEKSALQTEIANLLK 51 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555555555543
No 144
>2ve7_A Kinetochore protein HEC1, kinetochore protein SPC; mitosis, centromere, cell cycle, microtubule, C division, calponin homology; 2.88A {Homo sapiens} PDB: 3iz0_C*
Probab=20.96 E-value=2.4e+02 Score=22.19 Aligned_cols=28 Identities=11% Similarity=0.013 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040215 81 MKEVNSKTLEKLEKEKETVLAQMNELKK 108 (123)
Q Consensus 81 ~~e~~~~ei~~le~~~~~i~~~m~eLK~ 108 (123)
..+.+.+++..|++++++++.+...+++
T Consensus 186 eie~L~~~~~~L~eEi~~Le~~~e~~~k 213 (315)
T 2ve7_A 186 KLESLEAKNRALNEQIARLEQERSTANK 213 (315)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 3444445555555555555444444443
No 145
>3rrk_A V-type ATPase 116 kDa subunit; alpha beta fold, proton pump, subunit I/A, V-ATPase, proton; HET: NHE; 2.64A {Meiothermus ruber}
Probab=20.82 E-value=1.2e+02 Score=23.56 Aligned_cols=49 Identities=6% Similarity=-0.063 Sum_probs=0.0
Q ss_pred eeecChhHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 040215 66 FAHVPREEVEI--RIEEMKEVNSKTLEKLEKEKETVLAQMNELKKILYGKF 114 (123)
Q Consensus 66 Fv~~~~~~a~e--~LE~~~e~~~~ei~~le~~~~~i~~~m~eLK~~LYaKF 114 (123)
|-.++.++... .-......++.++..++..+..+..++..+...-+..+
T Consensus 210 f~~~~~p~~~~~~~p~~~l~~l~~~i~~l~~~l~~~~~~l~~~~~~~~~~l 260 (357)
T 3rrk_A 210 LAELRFPGAYGAMPLGKAAARMKERARLAPEELVGIREEVARLSRESGEAL 260 (357)
T ss_dssp CCBCCCCGGGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CeeccCCcccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 146
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=20.76 E-value=1.8e+02 Score=23.25 Aligned_cols=29 Identities=14% Similarity=0.212 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040215 79 EEMKEVNSKTLEKLEKEKETVLAQMNELK 107 (123)
Q Consensus 79 E~~~e~~~~ei~~le~~~~~i~~~m~eLK 107 (123)
++..++++.+|.+++.++++...+..+||
T Consensus 442 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 470 (471)
T 3mq9_A 442 QKKVEELEGEITTLNHKLQDASAEVERLR 470 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 36777899999999999999999998887
No 147
>2no2_A HIP-I, huntingtin-interacting protein 1; clathrin light chain binding, HIP1 coiled-coil domain, endocytosis, clathrin SELF-assembly, cell adhesion; 2.80A {Homo sapiens}
Probab=20.71 E-value=2e+02 Score=19.38 Aligned_cols=14 Identities=29% Similarity=0.401 Sum_probs=5.3
Q ss_pred HHHHHHHHHHHHHH
Q 040215 78 IEEMKEVNSKTLEK 91 (123)
Q Consensus 78 LE~~~e~~~~ei~~ 91 (123)
++..+..+..+|..
T Consensus 27 ~e~~k~eL~~~~~~ 40 (107)
T 2no2_A 27 LEREKKELEDSLER 40 (107)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 33333333333333
No 148
>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A
Probab=20.63 E-value=1.5e+02 Score=17.75 Aligned_cols=34 Identities=15% Similarity=0.130 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040215 77 RIEEMKEVNSKTLEKLEKEKETVLAQMNELKKIL 110 (123)
Q Consensus 77 ~LE~~~e~~~~ei~~le~~~~~i~~~m~eLK~~L 110 (123)
.|......+.+.-.+|.+-+.....++..||.+|
T Consensus 13 ~l~~~l~~L~~rN~rL~~~L~~AR~el~~Lkeel 46 (51)
T 3m91_A 13 QLEARIDSLAARNSKLMETLKEARQQLLALREEV 46 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3555666777777888888888888888888776
Done!