BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 040216
         (265 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q9S7C9|ESCA_ARATH Putative DNA-binding protein ESCAROLA OS=Arabidopsis thaliana
           GN=ESC PE=2 SV=1
          Length = 311

 Score =  159 bits (403), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 104/159 (65%), Positives = 125/159 (78%), Gaps = 9/159 (5%)

Query: 59  RRPRGRPAGSKNKPKPPIIVTRDSANALRAHAMEVSSGCDVSESLANFARRKQRGICILS 118
           +RPRGRP GSKNK KPPIIVTRDS NALR+H +EVS G D+ ES++ +ARR+ RG+ +L 
Sbjct: 86  KRPRGRPPGSKNKAKPPIIVTRDSPNALRSHVLEVSPGADIVESVSTYARRRGRGVSVLG 145

Query: 119 GSGCVTNVTLRQPAT---------SGSIVTLHGRFEILSLLGSILPPPAPPGITGLTIYL 169
           G+G V+NVTLRQP T          G +VTLHGRFEILSL G++LPPPAPPG  GL+I+L
Sbjct: 146 GNGTVSNVTLRQPVTPGNGGGVSGGGGVVTLHGRFEILSLTGTVLPPPAPPGAGGLSIFL 205

Query: 170 AGAQGQVVGGVVVGALIASGPVVIMAASFMNATFDRLPL 208
           AG QGQVVGG VV  LIAS PV++MAASF NA F+RLP+
Sbjct: 206 AGGQGQVVGGSVVAPLIASAPVILMAASFSNAVFERLPI 244


>sp|P38439|LEO1_YEAST RNA polymerase-associated protein LEO1 OS=Saccharomyces cerevisiae
           (strain ATCC 204508 / S288c) GN=LEO1 PE=1 SV=1
          Length = 464

 Score = 33.5 bits (75), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 23/72 (31%), Positives = 31/72 (43%), Gaps = 6/72 (8%)

Query: 4   GTDLNVHSVATKAAVDRNQELDKGNHQRPGTDAMLMPPRVAKAVSPVSAADGETLRRPRG 63
            T+  +H   +KA + RNQ   KG    PGT  + M P V K    +     + LR  R 
Sbjct: 294 STNSKIHQKLSKAVIRRNQRQSKG----PGTYIVSMDPEVEKK--ELERKQSQILRDRRR 347

Query: 64  RPAGSKNKPKPP 75
           R    K K + P
Sbjct: 348 RQLKEKEKQESP 359


>sp|Q01012|BRLF1_SHV21 Putative transcription activator BRLF1 homolog OS=Saimiriine
           herpesvirus 2 (strain 11) GN=50 PE=1 SV=1
          Length = 535

 Score = 32.3 bits (72), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 14/21 (66%), Positives = 15/21 (71%)

Query: 54  DGETLRRPRGRPAGSKNKPKP 74
           D  T RRPRGRP GSK K +P
Sbjct: 399 DPNTPRRPRGRPKGSKTKKRP 419


>sp|C1FN26|GCH1_CLOBJ GTP cyclohydrolase 1 OS=Clostridium botulinum (strain Kyoto / Type
           A2) GN=folE PE=3 SV=1
          Length = 196

 Score = 31.6 bits (70), Expect = 5.9,   Method: Compositional matrix adjust.
 Identities = 21/77 (27%), Positives = 33/77 (42%), Gaps = 4/77 (5%)

Query: 72  PKPPII----VTRDSANALRAHAMEVSSGCDVSESLANFARRKQRGICILSGSGCVTNVT 127
           PK  II    + R +    R   ++   G D++E L      +   + I    GC+T   
Sbjct: 104 PKKKIIGLSKIARIADMVGRRLQLQERIGSDIAEILQKITGSEDVAVIIEGEHGCMTTRG 163

Query: 128 LRQPATSGSIVTLHGRF 144
           +++P T     TL GRF
Sbjct: 164 IKKPGTKTITTTLRGRF 180


>sp|Q97D54|GCH1_CLOAB GTP cyclohydrolase 1 OS=Clostridium acetobutylicum (strain ATCC 824
           / DSM 792 / JCM 1419 / LMG 5710 / VKM B-1787) GN=folE
           PE=3 SV=1
          Length = 195

 Score = 31.2 bits (69), Expect = 8.2,   Method: Compositional matrix adjust.
 Identities = 14/50 (28%), Positives = 26/50 (52%)

Query: 96  GCDVSESLANFARRKQRGICILSGSGCVTNVTLRQPATSGSIVTLHGRFE 145
           G D++E +      K   + I    GC+T+  +++P    + +TL GRF+
Sbjct: 131 GKDIAEIMEKVTASKDIAVIIKGEHGCMTSRGIKKPGALTTTMTLKGRFK 180


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.316    0.133    0.392 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 103,798,821
Number of Sequences: 539616
Number of extensions: 4331314
Number of successful extensions: 13966
Number of sequences better than 100.0: 29
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 22
Number of HSP's that attempted gapping in prelim test: 13951
Number of HSP's gapped (non-prelim): 31
length of query: 265
length of database: 191,569,459
effective HSP length: 115
effective length of query: 150
effective length of database: 129,513,619
effective search space: 19427042850
effective search space used: 19427042850
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 60 (27.7 bits)