Query 040216
Match_columns 265
No_of_seqs 250 out of 608
Neff 4.8
Searched_HMMs 46136
Date Fri Mar 29 06:14:43 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040216.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/040216hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF03479 DUF296: Domain of unk 100.0 9.2E-30 2E-34 207.6 11.9 118 86-205 1-120 (120)
2 COG1661 Predicted DNA-binding 99.9 5.9E-27 1.3E-31 197.6 14.9 122 85-210 8-132 (141)
3 PF02178 AT_hook: AT hook moti 89.0 0.18 3.8E-06 26.8 0.6 12 59-70 1-12 (13)
4 smart00384 AT_hook DNA binding 73.0 2.4 5.2E-05 26.6 1.4 15 59-73 1-15 (26)
5 TIGR01252 acetolac_decarb alph 48.0 92 0.002 28.7 7.7 92 112-207 106-209 (232)
6 PF03306 AAL_decarboxy: Alpha- 45.5 37 0.00081 30.9 4.7 112 91-207 84-207 (220)
7 COG3527 AlsD Alpha-acetolactat 29.7 40 0.00086 31.4 2.3 108 95-209 92-213 (234)
8 PF02196 RBD: Raf-like Ras-bin 26.9 2.7E+02 0.0058 20.7 6.6 43 86-130 10-54 (71)
9 cd01760 RBD Ubiquitin-like dom 26.0 1.2E+02 0.0025 23.0 3.9 36 87-122 10-47 (72)
10 smart00455 RBD Raf-like Ras-bi 25.3 1.3E+02 0.0028 22.4 4.0 36 86-121 9-46 (70)
11 PF14201 DUF4318: Domain of un 24.2 1.2E+02 0.0026 23.3 3.7 23 95-117 16-38 (74)
12 PF11906 DUF3426: Protein of u 22.9 1.5E+02 0.0033 24.3 4.4 40 142-181 65-105 (149)
13 cd01817 RGS12_RBD Ubiquitin do 22.7 2.6E+02 0.0055 21.6 5.2 37 87-123 10-48 (73)
14 PF14869 DUF4488: Domain of un 22.0 1.1E+02 0.0024 26.2 3.4 35 113-149 28-62 (133)
No 1
>PF03479 DUF296: Domain of unknown function (DUF296); InterPro: IPR005175 This putative conserved domain is found in proteins that contain AT-hook motifs IPR000637 from INTERPRO, suggesting a DNA-binding function for the proteins as a whole, however, the function of this domain is unknown. Overexpression of a protein containing this domain, Q9S7C9 from SWISSPROT, in Arabidopsis thaliana causes late flowering and modified leaf development []. ; PDB: 2DT4_A 2P6Y_A 3HWU_A 3HTN_A 2NMU_A 2H6L_A 2HX0_A.
Probab=99.96 E-value=9.2e-30 Score=207.57 Aligned_cols=118 Identities=31% Similarity=0.440 Sum_probs=104.6
Q ss_pred cceEEEEeCCCCcHHHHHHHHHHHcCCcEEEEEeeeeeeeEEEeccC--CCCceEEeeceEEEEEeeeeecCCCCCCCCc
Q 040216 86 LRAHAMEVSSGCDVSESLANFARRKQRGICILSGSGCVTNVTLRQPA--TSGSIVTLHGRFEILSLLGSILPPPAPPGIT 163 (265)
Q Consensus 86 ~r~hVirl~~GeDIvesI~~far~~~~~~~VLSaiGaVsnVtLr~~~--~~~~~~tleG~fEILSLsGni~~~~~~~~~~ 163 (265)
||+|++||++||||+++|.+||+++++.+|++||+|+|++|+|++++ ..+.+.+++|+|||+||+|||...++ .++.
T Consensus 1 ~r~~~~rl~~Gedl~~~l~~~~~~~~i~~~~is~iGsl~~~~l~~~~~~~~~~~~~~~g~~Ei~sl~G~i~~~~g-~~~~ 79 (120)
T PF03479_consen 1 GRVFVIRLDPGEDLLESLEAFAREHGIRSGVISGIGSLSNVTLGYYDPPSYYEPLEFEGPFEIISLSGTISPEDG-KPFV 79 (120)
T ss_dssp EEEEEEEEETTSBHHHHHHHHHHHHT-SSEEEEEEEEEEEEEEEEEETTTEEEEEEEESEEEEEEEEEEEEEETT-EEEE
T ss_pred CcEEEEEECCCCHHHHHHHHHHHHCCCcEEEEEEEeEEeEEEEEEecccCCcceEEecccEEEEEeEEEEECCCC-CCcc
Confidence 68999999999999999999999999999999999999999999984 34678999999999999999998444 3589
Q ss_pred eEEEEEeCCCCeEEceeccCceEeeccEEEEEEeccCCceee
Q 040216 164 GLTIYLAGAQGQVVGGVVVGALIASGPVVIMAASFMNATFDR 205 (265)
Q Consensus 164 HLHIsLa~~dGqVvGGHL~g~lIAa~tVEVvi~sf~~~~~~R 205 (265)
|+|++|++.||+++||||..+.+ ..++||+|.++....++|
T Consensus 80 HlHisl~~~~g~v~gGHl~~g~v-~~t~Ev~i~~~~~~~~~~ 120 (120)
T PF03479_consen 80 HLHISLADPDGQVFGGHLLEGTV-FATAEVVITELSGINFTR 120 (120)
T ss_dssp EEEEEEE-TTSEEEEEEEEEEEE-EEEEEEEEEEETTEEEEE
T ss_pred eEEEEEECCCCeEEeeEeCCCEE-eEEEEEEEEEecCccccC
Confidence 99999999999999999996666 448999999998887776
No 2
>COG1661 Predicted DNA-binding protein with PD1-like DNA-binding motif [General function prediction only]
Probab=99.95 E-value=5.9e-27 Score=197.58 Aligned_cols=122 Identities=20% Similarity=0.278 Sum_probs=114.7
Q ss_pred ccceEEEEeCCCCcHHHHHHHHHHHcCCcEEEEEeeeeeeeEEEeccCC---CCceEEeeceEEEEEeeeeecCCCCCCC
Q 040216 85 ALRAHAMEVSSGCDVSESLANFARRKQRGICILSGSGCVTNVTLRQPAT---SGSIVTLHGRFEILSLLGSILPPPAPPG 161 (265)
Q Consensus 85 ~~r~hVirl~~GeDIvesI~~far~~~~~~~VLSaiGaVsnVtLr~~~~---~~~~~tleG~fEILSLsGni~~~~~~~~ 161 (265)
.-|.|++||++|+|+++.|.+||+++++.+++++|+|++++++|++++. +|.++++.++|||+||.|||+..+ +
T Consensus 8 ~gr~~~~Rld~G~d~~~~l~~~a~~~~i~aa~v~~iGal~~~~l~~~~~~~~~y~~~~~~e~~EvlSL~G~i~~~~---p 84 (141)
T COG1661 8 SGRVIALRLDPGEDLFSELEAFAEQEDIHAAVVTAIGALRDAKLRYFDPEEKEYETIPVNEPLEVLSLLGNIALDD---P 84 (141)
T ss_pred cceEEEEEeCCCccHHHHHHHHHHhcCceEEEEEEeeeeeeeEEEEecCCCCceEEEecCCcEEEEEecceeecCC---C
Confidence 3589999999999999999999999999999999999999999999985 378999999999999999999987 5
Q ss_pred CceEEEEEeCCCCeEEceeccCceEeeccEEEEEEeccCCceeeccCCh
Q 040216 162 ITGLTIYLAGAQGQVVGGVVVGALIASGPVVIMAASFMNATFDRLPLDD 210 (265)
Q Consensus 162 ~~HLHIsLa~~dGqVvGGHL~g~lIAa~tVEVvi~sf~~~~~~Rlp~e~ 210 (265)
+.|||++|++++|+++||||.++.+.. |+||+|.++....+.|.+++.
T Consensus 85 ~~HlHa~l~~~~G~~~GGHL~~~~V~~-t~Ev~I~el~~~~~~R~~d~~ 132 (141)
T COG1661 85 FVHLHAALGDENGITLGGHLLEGEVFP-TAEVFIRELPGELFRREFDPT 132 (141)
T ss_pred cEEEEEEEecCCCcEEeeeecccEEeE-EEEEEEEEccccceeEecCCC
Confidence 899999999999999999999998877 999999999999999999873
No 3
>PF02178 AT_hook: AT hook motif; InterPro: IPR017956 AT hooks are DNA-binding motifs with a preference for A/T rich regions. These motifs are found in a variety of proteins, including the high mobility group (HMG) proteins [], in DNA-binding proteins from plants [] and in hBRG1 protein, a central ATPase of the human switching/sucrose non-fermenting (SWI/SNF) remodeling complex []. High mobility group (HMG) proteins are a family of relatively low molecular weight non-histone components in chromatin []. HMG-I and HMG-Y (HMGA) are proteins of about 100 amino acid residues which are produced by the alternative splicing of a single gene. HMG-I/Y proteins bind preferentially to the minor groove of AT-rich regions in double-stranded DNA in a non-sequence specific manner [, ]. It is suggested that these proteins could function in nucleosome phasing and in the 3' end processing of mRNA transcripts. They are also involved in the transcription regulation of genes containing, or in close proximity to, AT-rich regions. ; GO: 0003677 DNA binding; PDB: 2EZE_A 2EZD_A 2EZF_A 2EZG_A.
Probab=88.95 E-value=0.18 Score=26.84 Aligned_cols=12 Identities=42% Similarity=0.833 Sum_probs=3.2
Q ss_pred CCCCCCCCCCCC
Q 040216 59 RRPRGRPAGSKN 70 (265)
Q Consensus 59 ~r~rGRP~GSkn 70 (265)
+|+||||+.+..
T Consensus 1 ~r~RGRP~k~~~ 12 (13)
T PF02178_consen 1 KRKRGRPRKNAK 12 (13)
T ss_dssp S--SS--TT---
T ss_pred CCcCCCCccccC
Confidence 366777776554
No 4
>smart00384 AT_hook DNA binding domain with preference for A/T rich regions. Small DNA-binding motif first described in the high mobility group non-histone chromosomal protein HMG-I(Y).
Probab=72.99 E-value=2.4 Score=26.62 Aligned_cols=15 Identities=33% Similarity=0.687 Sum_probs=11.0
Q ss_pred CCCCCCCCCCCCCCC
Q 040216 59 RRPRGRPAGSKNKPK 73 (265)
Q Consensus 59 ~r~rGRP~GSknK~k 73 (265)
+|+||||+...+...
T Consensus 1 kRkRGRPrK~~~~~~ 15 (26)
T smart00384 1 KRKRGRPRKAPKDXX 15 (26)
T ss_pred CCCCCCCCCCCCccc
Confidence 578999987776543
No 5
>TIGR01252 acetolac_decarb alpha-acetolactate decarboxylase. Puruvate can be fermented to 2,3-butanediol. It is first converted to alpha-acetolactate by alpha-acetolactate synthase, then decarboxylated to acetoin by this enzyme. Acetoin can be reduced in some species to 2,3-butanediol by acetoin reductase.
Probab=48.02 E-value=92 Score=28.71 Aligned_cols=92 Identities=15% Similarity=0.195 Sum_probs=55.7
Q ss_pred CcEEEEEeeeeeeeEEEeccCC---CCc----eEEeeceEEEEEeeeeecCCCC-----CCCCceEEEEEeCCCCeEEce
Q 040216 112 RGICILSGSGCVTNVTLRQPAT---SGS----IVTLHGRFEILSLLGSILPPPA-----PPGITGLTIYLAGAQGQVVGG 179 (265)
Q Consensus 112 ~~~~VLSaiGaVsnVtLr~~~~---~~~----~~tleG~fEILSLsGni~~~~~-----~~~~~HLHIsLa~~dGqVvGG 179 (265)
-..+-+---|..++|+.|-.-. +|. .+.=+-.||+-..+|++.-.-. .-...++|+-+-+.| +.+||
T Consensus 106 N~f~Airi~G~F~~v~~Rsvp~Q~kPy~~l~e~~~~Q~~f~~~nv~GTlvGF~sP~~~~gi~v~G~HlHFisdD-r~~GG 184 (232)
T TIGR01252 106 NVFYAIRITGEFPKVQTRTVPKQEKPYPPFVEVVKGQPEFHFDNVTGTIVGFWTPAYAKGINVAGYHLHFISED-RTFGG 184 (232)
T ss_pred ccEEEEEEEEEeceeEEEecCCCCCCCcCHHHHhcCCceEEEeccEEEEEEEecchhccccCCceEEEEEecCC-CCCCc
Confidence 4577778889999999997432 232 1122445888888888752111 112345566565555 66799
Q ss_pred eccCceEeeccEEEEEEeccCCceeecc
Q 040216 180 VVVGALIASGPVVIMAASFMNATFDRLP 207 (265)
Q Consensus 180 HL~g~lIAa~tVEVvi~sf~~~~~~Rlp 207 (265)
||.+-.+.. +.+-+..+.+-. -++|
T Consensus 185 HVld~~~~~--~~~~i~~~~~~~-~~lP 209 (232)
T TIGR01252 185 HVLDYIIDN--GTLEIGQIQEFN-LQLP 209 (232)
T ss_pred ceeEEEeee--eEEEEeecccEE-EeCC
Confidence 999866544 455555555443 3556
No 6
>PF03306 AAL_decarboxy: Alpha-acetolactate decarboxylase; InterPro: IPR005128 Alpha-acetolactate decarboxylase plays a dual role in the cell: (i) it catalyzes the second step of the acetoin pathway, (S)-2-hydroxy-2-methyl-3-oxobutanoate = (R)-2-acetoin + CO2 and thus potentially the internal pH of cells and (ii) it controls the pool of alpha-acetolactate during leucine and valine synthesis.; GO: 0047605 acetolactate decarboxylase activity, 0019751 polyol metabolic process, 0005789 endoplasmic reticulum membrane; PDB: 1XV2_B.
Probab=45.46 E-value=37 Score=30.93 Aligned_cols=112 Identities=14% Similarity=0.205 Sum_probs=58.5
Q ss_pred EEeCCCCcHHHHHHHHHHHcCCcEEEEEeeeeeeeEEEeccCCC---Cc----eEEeeceEEEEEeeeeec----CCCC-
Q 040216 91 MEVSSGCDVSESLANFARRKQRGICILSGSGCVTNVTLRQPATS---GS----IVTLHGRFEILSLLGSIL----PPPA- 158 (265)
Q Consensus 91 irl~~GeDIvesI~~far~~~~~~~VLSaiGaVsnVtLr~~~~~---~~----~~tleG~fEILSLsGni~----~~~~- 158 (265)
.....-++|-+.|.+.....+. ...+---|..+.|++|-.... |. .+.-+-.||.=.++|++. |.--
T Consensus 84 ~~~~~~~~l~~~l~~~~~~~N~-f~airi~G~F~~v~~Rsv~~qe~Py~~l~e~~~~Q~~f~~~ni~GTlVGf~sP~~~~ 162 (220)
T PF03306_consen 84 DSPMSKEELEAKLDELLPSKNL-FYAIRIDGTFSSVKTRSVPKQEKPYPPLAEVAKNQPEFTFENIEGTLVGFYSPEYMG 162 (220)
T ss_dssp EEEEEHHHHHHHHHHHSS-TTS--EEEEEEEEEEEEEEE------SS---THHHHTT--EEEEEEEEEEEEEEEE-GGGB
T ss_pred CCCCCHHHHHHHHHHhcCCCce-EEEEEEEEEECeEEEEeccCccCCCCChhHHhccCceEEecCcEEEEEEEEcchhcc
Confidence 4445567777777777664443 566667999999999985432 21 111233577777777765 2210
Q ss_pred CCCCceEEEEEeCCCCeEEceeccCceEeeccEEEEEEeccCCceeecc
Q 040216 159 PPGITGLTIYLAGAQGQVVGGVVVGALIASGPVVIMAASFMNATFDRLP 207 (265)
Q Consensus 159 ~~~~~HLHIsLa~~dGqVvGGHL~g~lIAa~tVEVvi~sf~~~~~~Rlp 207 (265)
.-...++|+.+-+.| +.+||||.+-.+.. ++|-+..+.+-. -++|
T Consensus 163 gi~v~G~HlHFls~D-r~~GGHvld~~~~~--~~v~~~~~~~~~-l~lP 207 (220)
T PF03306_consen 163 GINVPGFHLHFLSDD-RTFGGHVLDFELDN--GTVEIDVFDDFE-LELP 207 (220)
T ss_dssp TTB-CEEEEEEEETT-SS-EEEEEEEEEEE--EEEEEEE-SEEE-EE--
T ss_pred ccCCceEEEEEecCC-CCCCCCeEEEEece--EEEEEEecCCEE-EECc
Confidence 001234444444444 67899999866644 555566655544 4677
No 7
>COG3527 AlsD Alpha-acetolactate decarboxylase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=29.69 E-value=40 Score=31.36 Aligned_cols=108 Identities=21% Similarity=0.250 Sum_probs=60.3
Q ss_pred CCCcHHHHHHHHHHHcCCcEEEEEeeeeeeeEEEeccCCC---C----ceEEeeceEEEEEeeeeec----CCCCC---C
Q 040216 95 SGCDVSESLANFARRKQRGICILSGSGCVTNVTLRQPATS---G----SIVTLHGRFEILSLLGSIL----PPPAP---P 160 (265)
Q Consensus 95 ~GeDIvesI~~far~~~~~~~VLSaiGaVsnVtLr~~~~~---~----~~~tleG~fEILSLsGni~----~~~~~---~ 160 (265)
.-+|+.+.|..+..-.+.. +-+...|.-..|..|..-.+ | .....+=-||.=...|+|. |.... -
T Consensus 92 s~e~~~~~i~~~~~s~NlF-~aiki~G~F~~v~~R~vp~q~~py~p~~e~~~~QPvf~~Env~GtiVGf~tP~~~~Gl~v 170 (234)
T COG3527 92 SSEDVFSGISGTMDSENLF-YAIKITGIFKYVHVRMVPKQTPPYTPLAEVVKIQPVFEFENVKGTIVGFWTPEYFEGLAV 170 (234)
T ss_pred cHHHHHHHhhcccCCCceE-EEEEEeccccceEEEEEeccCCCCccHhhhhccCCceEEeecCceEEEecChHHhccccc
Confidence 4569999998887777643 33455666666666653221 2 1222222245444555543 32211 1
Q ss_pred CCceEEEEEeCCCCeEEceeccCceEeeccEEEEEEeccCCceeeccCC
Q 040216 161 GITGLTIYLAGAQGQVVGGVVVGALIASGPVVIMAASFMNATFDRLPLD 209 (265)
Q Consensus 161 ~~~HLHIsLa~~dGqVvGGHL~g~lIAa~tVEVvi~sf~~~~~~Rlp~e 209 (265)
.-.|+|+ . .|++.+||||..-.+-.++|||-..+ +-. -++|..
T Consensus 171 ~GyHlHF--i-tDdrtfGGHV~D~~~~~~~veI~~~~--~l~-~e~Pv~ 213 (234)
T COG3527 171 AGYHLHF--I-TDDRTFGGHVLDFEIENGEVEIGAIE--NLR-QEFPVN 213 (234)
T ss_pred CceEEEE--e-ecCccccceEEEEEeeeEEEEEeeee--eee-ecCCcc
Confidence 1245555 4 56799999999877777666665543 322 345555
No 8
>PF02196 RBD: Raf-like Ras-binding domain; InterPro: IPR003116 This is the Ras-binding domain found in proteins related to Ras. It is found in association with the PE-bind and pkinase domains.; GO: 0005057 receptor signaling protein activity, 0007165 signal transduction; PDB: 1RFA_A 1C1Y_B 3KUD_B 1GUA_B 3KUC_B 2L05_A 3NY5_D 1RRB_A 1WFY_A 1WXM_A.
Probab=26.89 E-value=2.7e+02 Score=20.68 Aligned_cols=43 Identities=14% Similarity=0.270 Sum_probs=32.9
Q ss_pred cceEEEEeCCCCcHHHHHHHHHHHcC--CcEEEEEeeeeeeeEEEec
Q 040216 86 LRAHAMEVSSGCDVSESLANFARRKQ--RGICILSGSGCVTNVTLRQ 130 (265)
Q Consensus 86 ~r~hVirl~~GeDIvesI~~far~~~--~~~~VLSaiGaVsnVtLr~ 130 (265)
-+.-++.+.+|+-|-+.|...|++++ ...|.+-=.| .+-.|-+
T Consensus 10 ~q~t~V~vrpg~ti~d~L~~~~~kr~L~~~~~~V~~~~--~~k~l~~ 54 (71)
T PF02196_consen 10 GQRTVVQVRPGMTIRDALSKACKKRGLNPECCDVRLVG--EKKPLDW 54 (71)
T ss_dssp TEEEEEEE-TTSBHHHHHHHHHHTTT--CCCEEEEEEE--EEEEE-T
T ss_pred CCEEEEEEcCCCCHHHHHHHHHHHcCCCHHHEEEEEcC--CCccccC
Confidence 36678999999999999999999999 4677777777 4555554
No 9
>cd01760 RBD Ubiquitin-like domain of RBD-like S/T kinases. The ras-binding domain (RBD) of the serine/threonine kinase raf is structurally quite similar to the beta-grasp fold of ubiquitin. A raf-like RBD is also present in RGS12 and other members of a family of GTPase activating proteins and TIAM1, a guanine nucleotide exchange protein.
Probab=26.03 E-value=1.2e+02 Score=23.00 Aligned_cols=36 Identities=19% Similarity=0.281 Sum_probs=28.6
Q ss_pred ceEEEEeCCCCcHHHHHHHHHHHcCC--cEEEEEeeee
Q 040216 87 RAHAMEVSSGCDVSESLANFARRKQR--GICILSGSGC 122 (265)
Q Consensus 87 r~hVirl~~GeDIvesI~~far~~~~--~~~VLSaiGa 122 (265)
+..++.+.+|+-|.+.|...|++++. ..|.+--.|.
T Consensus 10 ~~t~V~vrpg~ti~d~L~~~c~kr~l~~~~~~v~~~~~ 47 (72)
T cd01760 10 QRTVVPVRPGMSVRDVLAKACKKRGLNPECCDVFLLGL 47 (72)
T ss_pred CeEEEEECCCCCHHHHHHHHHHHcCCCHHHEEEEEecC
Confidence 56689999999999999999999994 4555544444
No 10
>smart00455 RBD Raf-like Ras-binding domain.
Probab=25.26 E-value=1.3e+02 Score=22.37 Aligned_cols=36 Identities=19% Similarity=0.370 Sum_probs=29.5
Q ss_pred cceEEEEeCCCCcHHHHHHHHHHHcCC--cEEEEEeee
Q 040216 86 LRAHAMEVSSGCDVSESLANFARRKQR--GICILSGSG 121 (265)
Q Consensus 86 ~r~hVirl~~GeDIvesI~~far~~~~--~~~VLSaiG 121 (265)
-+...+.+.+|.-|.|.|...|++++. ..|.+.-.|
T Consensus 9 ~~~~~V~vrpg~tl~e~L~~~~~kr~l~~~~~~v~~~g 46 (70)
T smart00455 9 NQRTVVKVRPGKTVRDALAKALKKRGLNPECCVVRLRG 46 (70)
T ss_pred CCEEEEEECCCCCHHHHHHHHHHHcCCCHHHEEEEEcC
Confidence 367789999999999999999999994 456655555
No 11
>PF14201 DUF4318: Domain of unknown function (DUF4318)
Probab=24.16 E-value=1.2e+02 Score=23.32 Aligned_cols=23 Identities=9% Similarity=0.326 Sum_probs=18.6
Q ss_pred CCCcHHHHHHHHHHHcCCcEEEE
Q 040216 95 SGCDVSESLANFARRKQRGICIL 117 (265)
Q Consensus 95 ~GeDIvesI~~far~~~~~~~VL 117 (265)
.-++|.++|.+||.+++...=.+
T Consensus 16 s~e~i~~aIE~YC~~~~~~l~Fi 38 (74)
T PF14201_consen 16 SKEEICEAIEKYCIKNGESLEFI 38 (74)
T ss_pred CHHHHHHHHHHHHHHcCCceEEE
Confidence 55789999999999998765443
No 12
>PF11906 DUF3426: Protein of unknown function (DUF3426); InterPro: IPR021834 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 262 to 463 amino acids in length.
Probab=22.90 E-value=1.5e+02 Score=24.27 Aligned_cols=40 Identities=25% Similarity=0.263 Sum_probs=29.9
Q ss_pred ceEEEEEeeeeecCCCCC-CCCceEEEEEeCCCCeEEceec
Q 040216 142 GRFEILSLLGSILPPPAP-PGITGLTIYLAGAQGQVVGGVV 181 (265)
Q Consensus 142 G~fEILSLsGni~~~~~~-~~~~HLHIsLa~~dGqVvGGHL 181 (265)
+.-+++-++|++.+.... -.+.++.++|.|.+|+++.--+
T Consensus 65 ~~~~~l~v~g~i~N~~~~~~~~P~l~l~L~D~~g~~l~~r~ 105 (149)
T PF11906_consen 65 DGPGVLVVSGTIRNRADFPQALPALELSLLDAQGQPLARRV 105 (149)
T ss_pred CCCCEEEEEEEEEeCCCCcccCceEEEEEECCCCCEEEEEE
Confidence 345778888888876543 3589999999999998865444
No 13
>cd01817 RGS12_RBD Ubiquitin domain of RGS12 and RGS14. RGS12 (regulator of G signalling 12), and RGS14, are members of a family of GTPase-activating proteins (GAP's) specific for the G-alpha subunit, which act as key inhibitors of G-protein-mediated cell responses in eukaryotes. Their domain architecture includes tandem RBD domains as well as PDZ , PTB, and RGS, and GoLoco domains.
Probab=22.69 E-value=2.6e+02 Score=21.59 Aligned_cols=37 Identities=11% Similarity=0.118 Sum_probs=28.3
Q ss_pred ceEEEEeCCCCcHHHHHHHHHHHcCC--cEEEEEeeeee
Q 040216 87 RAHAMEVSSGCDVSESLANFARRKQR--GICILSGSGCV 123 (265)
Q Consensus 87 r~hVirl~~GeDIvesI~~far~~~~--~~~VLSaiGaV 123 (265)
..-++.+.+|+-|.+.|...|++++. ..|.+--.|.=
T Consensus 10 ~~T~V~vrpG~ti~d~L~kllekRgl~~~~~~vf~~g~~ 48 (73)
T cd01817 10 STTVVPTRPGESIRDLLSGLCEKRGINYAAVDLFLVGGD 48 (73)
T ss_pred CeEEEEecCCCCHHHHHHHHHHHcCCChhHEEEEEecCC
Confidence 34488999999999999999999994 45555444443
No 14
>PF14869 DUF4488: Domain of unknown function (DUF4488)
Probab=21.97 E-value=1.1e+02 Score=26.15 Aligned_cols=35 Identities=37% Similarity=0.429 Sum_probs=28.3
Q ss_pred cEEEEEeeeeeeeEEEeccCCCCceEEeeceEEEEEe
Q 040216 113 GICILSGSGCVTNVTLRQPATSGSIVTLHGRFEILSL 149 (265)
Q Consensus 113 ~~~VLSaiGaVsnVtLr~~~~~~~~~tleG~fEILSL 149 (265)
..=|||.=|+..|+++.. . +++.++..|.||+.|=
T Consensus 28 ~lKilS~Dgtf~Ni~~~~-~-~~aiIt~~GtY~~~sD 62 (133)
T PF14869_consen 28 VLKILSDDGTFVNITMIP-K-SGAIITGYGTYEQPSD 62 (133)
T ss_pred cEEEEcCCCcEEEEEEeC-C-CCcEEEEeEEEEEcCC
Confidence 356899999999999932 2 3589999999999873
Done!