Query 040216
Match_columns 265
No_of_seqs 250 out of 608
Neff 4.8
Searched_HMMs 29240
Date Mon Mar 25 09:38:21 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040216.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/040216hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2hx0_A Putative DNA-binding pr 100.0 4.2E-30 1.5E-34 217.0 17.2 127 78-210 10-137 (154)
2 2dt4_A Hypothetical protein PH 100.0 2.3E-30 7.9E-35 215.4 12.4 120 87-210 10-132 (143)
3 2p6y_A Hypothetical protein VC 100.0 1.3E-29 4.3E-34 211.3 16.7 119 86-210 2-121 (142)
4 3htn_A Putative DNA binding pr 100.0 5.4E-30 1.9E-34 215.3 12.6 121 87-210 16-139 (149)
5 2h6l_A Hypothetical protein; N 100.0 5.1E-30 1.7E-34 214.1 11.9 120 87-210 10-132 (146)
6 3hwu_A Putative DNA-binding pr 99.9 1.4E-27 4.7E-32 200.0 13.2 121 87-210 13-136 (147)
7 2ezd_A High mobility group pro 97.5 4.5E-05 1.5E-09 46.3 2.1 17 57-73 3-19 (26)
8 1xv2_A ALDC, hypothetical prot 61.3 17 0.00058 32.2 6.5 108 97-210 97-216 (237)
9 4i95_A Putative uncharacterize 34.8 29 0.00098 28.8 3.3 34 113-148 37-70 (142)
10 2k9i_A Plasmid PRN1, complete 28.9 41 0.0014 21.8 2.8 24 90-113 11-34 (55)
11 1t3g_A X-linked interleukin-1 24.4 48 0.0017 26.8 3.0 27 93-119 51-77 (159)
12 4gzv_A Hypothetical protein; A 21.1 70 0.0024 26.4 3.3 34 113-148 37-70 (142)
No 1
>2hx0_A Putative DNA-binding protein; NESG, PSI-2, SCR59, structural genomics, protein structure initiative; 1.55A {Salmonella choleraesuis} SCOP: d.290.1.3 PDB: 2nmu_A
Probab=99.97 E-value=4.2e-30 Score=216.98 Aligned_cols=127 Identities=24% Similarity=0.361 Sum_probs=114.6
Q ss_pred EecCCcCccceEEEEeCCCCcHHHHHHHHHHHcCC-cEEEEEeeeeeeeEEEeccCCCCceEEeeceEEEEEeeeeecCC
Q 040216 78 VTRDSANALRAHAMEVSSGCDVSESLANFARRKQR-GICILSGSGCVTNVTLRQPATSGSIVTLHGRFEILSLLGSILPP 156 (265)
Q Consensus 78 i~~~s~~~~r~hVirl~~GeDIvesI~~far~~~~-~~~VLSaiGaVsnVtLr~~~~~~~~~tleG~fEILSLsGni~~~ 156 (265)
++.++++.+|+|++||++||||+++|.+||+++++ ++||++++|+|++|+|+|++... +++++|+|||+||+|||++.
T Consensus 10 ~~~~~~~~~r~~vlrL~~Gedl~~~i~~~~~~~gi~~a~v~s~iGsl~~~~l~~~~~~~-~~~~~g~~EIlsl~Gti~~~ 88 (154)
T 2hx0_A 10 VSHHNASTARFYALRLLPGQEVFSQLHAFVQQNQLRAAWIAGCTGSLTDVALRYAGQEA-TTSLTGTFEVISLNGTLELT 88 (154)
T ss_dssp --CCSCCCCEEEEEEECTTCBHHHHHHHHHHHHTCSSEEEEEEEEEEEEEEEECTTCSS-CEEEEEEEEEEEEEEEEETT
T ss_pred eccCCCCCccEEEEEECCCCcHHHHHHHHHHHhCCCEEEEEEeEeeeEEeEEEccCCCc-cEecCCcEEEEEeeeeEeCC
Confidence 45678899999999999999999999999999996 67888999999999999998754 78899999999999999985
Q ss_pred CCCCCCceEEEEEeCCCCeEEceeccCceEeeccEEEEEEeccCCceeeccCCh
Q 040216 157 PAPPGITGLTIYLAGAQGQVVGGVVVGALIASGPVVIMAASFMNATFDRLPLDD 210 (265)
Q Consensus 157 ~~~~~~~HLHIsLa~~dGqVvGGHL~g~lIAa~tVEVvi~sf~~~~~~Rlp~e~ 210 (265)
..|||++|++.||+++||||.+.+++..|+||++.+|.+..++|++|++
T Consensus 89 -----~~HlHisl~~~~G~v~GGHL~~g~~V~~t~Ev~i~~~~~~~~~R~~D~e 137 (154)
T 2hx0_A 89 -----GEHLHLAVSDPYGVMLGGHMMPGCTVRTTLELVIGELPALTFSRQPCAI 137 (154)
T ss_dssp -----EEEEEEEEECTTSCEEEEEECTTCEEEEEEEEEEEECTTEEEEEEECTT
T ss_pred -----CCEEEEEEECCCCCEEccccCCCCcEEEEEEEEEEEccCceEEEecCCC
Confidence 4899999999999999999997555557999999999998999999886
No 2
>2dt4_A Hypothetical protein PH0802; PPC domain, structural genomics, unknown function; 1.60A {Pyrococcus horikoshii}
Probab=99.97 E-value=2.3e-30 Score=215.44 Aligned_cols=120 Identities=20% Similarity=0.353 Sum_probs=110.4
Q ss_pred ceEEEEeCCCCcHHHHHHHHHHHcCCcEEEEEeeeeeeeEEEeccCCC---CceEEeeceEEEEEeeeeecCCCCCCCCc
Q 040216 87 RAHAMEVSSGCDVSESLANFARRKQRGICILSGSGCVTNVTLRQPATS---GSIVTLHGRFEILSLLGSILPPPAPPGIT 163 (265)
Q Consensus 87 r~hVirl~~GeDIvesI~~far~~~~~~~VLSaiGaVsnVtLr~~~~~---~~~~tleG~fEILSLsGni~~~~~~~~~~ 163 (265)
++|++||++||||+++|.+||+++++..|+++++|+|++|+|++++.. |..++++|+|||+||+|||++.+++ ++.
T Consensus 10 r~~~lrl~~Gedl~~~i~~~~~~~~i~~a~vs~iGsl~~~~l~~~~~~~~~~~~~~~~g~~EIlsl~Gti~~~~g~-p~~ 88 (143)
T 2dt4_A 10 RTYLFRVPEGEELLTYIKNFCKKEGIETAIINGIGTLKNPKIGYFLEEKKEYKVIPLKGSYELISLIGNVSLKDGE-PFV 88 (143)
T ss_dssp EEEEEEECTTCBHHHHHHHHHHHHTCCSEEEEEEEEEEEEEEEEEETTTTEEEEEECCSEEEEEEEEEEEEEETTE-EEE
T ss_pred CEEEEEECCCCcHHHHHHHHHHHcCCCEEEEEEEEEEEEEEEEeecCccCcceeEeecCCEEEEEeEEEEECCCCC-cee
Confidence 799999999999999999999999988888899999999999998864 3578999999999999999997654 489
Q ss_pred eEEEEEeCCCCeEEceeccCceEeeccEEEEEEeccCCceeeccCCh
Q 040216 164 GLTIYLAGAQGQVVGGVVVGALIASGPVVIMAASFMNATFDRLPLDD 210 (265)
Q Consensus 164 HLHIsLa~~dGqVvGGHL~g~lIAa~tVEVvi~sf~~~~~~Rlp~e~ 210 (265)
|+|++++|.||+++||||..++ .+ ++||++.+|.+..|+|++ ++
T Consensus 89 HlHi~l~~~~G~v~GGHl~~g~-v~-t~Ev~i~~~~~~~~~R~~-~e 132 (143)
T 2dt4_A 89 HAHVSLGNEEGIVFGGHLVEGE-VF-VAEIFLQELKGEKIERKP-TK 132 (143)
T ss_dssp EEEEEEECTTSCEEEEEEEEEE-EE-EEEEEEEEEEESCCEEBC-CT
T ss_pred eEEEEEECCCCCEeCCCCCCCc-eE-EEEEEEEEcCCCeEEEeC-CC
Confidence 9999999999999999999877 56 999999999999999999 65
No 3
>2p6y_A Hypothetical protein VCA0587; NESG, Q9KM02_vibch, VCR80, structural genomics, PSI-2, prote structure initiative; 1.63A {Vibrio cholerae}
Probab=99.97 E-value=1.3e-29 Score=211.34 Aligned_cols=119 Identities=24% Similarity=0.377 Sum_probs=108.3
Q ss_pred cceEEEEeCCCCcHHHHHHHHHHHcCC-cEEEEEeeeeeeeEEEeccCCCCceEEeeceEEEEEeeeeecCCCCCCCCce
Q 040216 86 LRAHAMEVSSGCDVSESLANFARRKQR-GICILSGSGCVTNVTLRQPATSGSIVTLHGRFEILSLLGSILPPPAPPGITG 164 (265)
Q Consensus 86 ~r~hVirl~~GeDIvesI~~far~~~~-~~~VLSaiGaVsnVtLr~~~~~~~~~tleG~fEILSLsGni~~~~~~~~~~H 164 (265)
|++|++||++||||+++|.+||+++++ ++||++++|+|++++|++++.. .+++++|+|||+||+|||++. ..|
T Consensus 2 ~r~~~lrL~~Gedl~~~i~~~~~~~~i~~a~v~~~iGsl~~~~l~~~~~~-~~~~~~g~~EIlsl~Gti~~~-----~~H 75 (142)
T 2p6y_A 2 IHLIALRLTRGMDLKQQIVQLVQQHRIHAGSIASCVGCLSTLHIRLADSV-STLQVSAPFEILSLSGTLTYQ-----HCH 75 (142)
T ss_dssp CEEEEEEECTTCBHHHHHHHHHHHTTCSSEEEEEEEEEEEEEEEECTTSS-CEEEECSCEEEEEEEEEECSS-----CEE
T ss_pred CcEEEEEECCCCcHHHHHHHHHHHhCCCEEEEEEeEEEEEeEEEECCCCC-ccEecCCcEEEEEeEEEEeCC-----CCE
Confidence 799999999999999999999999996 6788899999999999999875 368899999999999999984 489
Q ss_pred EEEEEeCCCCeEEceeccCceEeeccEEEEEEeccCCceeeccCCh
Q 040216 165 LTIYLAGAQGQVVGGVVVGALIASGPVVIMAASFMNATFDRLPLDD 210 (265)
Q Consensus 165 LHIsLa~~dGqVvGGHL~g~lIAa~tVEVvi~sf~~~~~~Rlp~e~ 210 (265)
||++++|.||+++||||.+.+++..|+||++.+|.+..|+|++|++
T Consensus 76 lHisl~~~~G~v~GGHl~~g~~V~~t~Ev~i~~~~~~~~~R~~D~e 121 (142)
T 2p6y_A 76 LHIAVADAQGRVWGGHLLEGNLINTTAELMIHHYPQHHFTREFDPN 121 (142)
T ss_dssp EEEEEECTTSCEEEEEECTTCEECC-EEEEEEECTTEEEEEEEETT
T ss_pred EEEEEECCCCCEEccccCCCCeEEEEEEEEEEEccCCeEEEeeCCC
Confidence 9999999999999999997555577999999999998999999876
No 4
>3htn_A Putative DNA binding protein; DUF269 family protein, structural genomics, joint center for structural genomics, JCSG; HET: MSE 1PE; 1.50A {Bacteroides thetaiotaomicron vpi-5482} SCOP: d.290.1.0
Probab=99.96 E-value=5.4e-30 Score=215.28 Aligned_cols=121 Identities=17% Similarity=0.215 Sum_probs=111.0
Q ss_pred ceEEEEeCCCCcHHHHHHHHHHHcCCcEEEEEeeeeeeeEEEeccCCC---CceEEeeceEEEEEeeeeecCCCCCCCCc
Q 040216 87 RAHAMEVSSGCDVSESLANFARRKQRGICILSGSGCVTNVTLRQPATS---GSIVTLHGRFEILSLLGSILPPPAPPGIT 163 (265)
Q Consensus 87 r~hVirl~~GeDIvesI~~far~~~~~~~VLSaiGaVsnVtLr~~~~~---~~~~tleG~fEILSLsGni~~~~~~~~~~ 163 (265)
|.|++||++||||+++|.+||+++++..|+++++|+|++|+|++++.. |..++++|+|||+||+|||++.+++ ++.
T Consensus 16 r~~~lrl~~Gedl~~~l~~~~~~~~i~~a~vs~iGsl~~~~l~~~~~~~~~y~~~~~~g~~EI~sl~Gti~~~dG~-p~~ 94 (149)
T 3htn_A 16 NKYIVSINNHTEIVKALNAFCKEKGILSGSINGIGAIGELTLRFFNPKTKAYDDKTFREQMEISNLTGNISSMNEQ-VYL 94 (149)
T ss_dssp TEEEEEECTTCBHHHHHHHHHHHHTCCSEEEEEEEEEEEEEEEEECTTTCCEEEEEECSCEEEEEEEEEEEEETTE-EEE
T ss_pred CEEEEEECCCChHHHHHHHHHHHcCCcEEEEEEEEEeeeEEEEccCCCcccceeEEecCceEEEEeEEEEEccCCC-ceE
Confidence 899999999999999999999999998888899999999999998763 4578999999999999999998665 489
Q ss_pred eEEEEEeCCCCeEEceeccCceEeeccEEEEEEeccCCceeeccCCh
Q 040216 164 GLTIYLAGAQGQVVGGVVVGALIASGPVVIMAASFMNATFDRLPLDD 210 (265)
Q Consensus 164 HLHIsLa~~dGqVvGGHL~g~lIAa~tVEVvi~sf~~~~~~Rlp~e~ 210 (265)
|||++|++.||+++||||..+.+ ..|+||+|.++.+ .++|.+|++
T Consensus 95 HlH~sl~~~~G~v~gGHl~~g~V-~~t~Ei~i~~~~~-~~~R~~D~~ 139 (149)
T 3htn_A 95 HLHITVGRSDYSALAGHLLSAIQ-NGAGEFVVEDYSE-RISRTYNPD 139 (149)
T ss_dssp EEEEEEECTTSBEEEEEEEEEEE-EEEEEEEEEECCS-CCEEEEETT
T ss_pred EEEEEEECCCCCEEeEEeCCCEE-EEEEEEEEEEcCC-eeEEeeCCc
Confidence 99999999999999999998844 5699999999988 799999876
No 5
>2h6l_A Hypothetical protein; NESG GR103, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.00A {Archaeoglobus fulgidus} SCOP: d.290.1.3
Probab=99.96 E-value=5.1e-30 Score=214.05 Aligned_cols=120 Identities=18% Similarity=0.233 Sum_probs=110.6
Q ss_pred ceEEEEeCCCCcHHHHHHHHHHHcCCcEEEEEeeeeeeeEEEeccCCCC---ceEEeeceEEEEEeeeeecCCCCCCCCc
Q 040216 87 RAHAMEVSSGCDVSESLANFARRKQRGICILSGSGCVTNVTLRQPATSG---SIVTLHGRFEILSLLGSILPPPAPPGIT 163 (265)
Q Consensus 87 r~hVirl~~GeDIvesI~~far~~~~~~~VLSaiGaVsnVtLr~~~~~~---~~~tleG~fEILSLsGni~~~~~~~~~~ 163 (265)
++|++||++||||+++|.+||+++++..|+++++|+|++++|++++... .+++++|+|||+||+|||++.+++ ++.
T Consensus 10 r~~~lrl~~Gedl~~~i~~~~~~~~i~~a~vs~iGsl~~~~l~~~~~~~~~y~~~~~~g~~EIlsl~Gti~~~dg~-p~~ 88 (146)
T 2h6l_A 10 KGFLLRLDYGKDLVRQIEEFLEEKGIHAAHISAIGAVRSAVIGYYDQEKKEYVKKELMEPLEILSLSGNVSMKDSK-PFC 88 (146)
T ss_dssp EEEEEECCTTSBHHHHHHHHHHHHTCCSEEEEEEEEEEEEEEEEEETTTTEEEEEEECSCEEEEEEEEEEEEETTE-EEE
T ss_pred CEEEEEECCCCCHHHHHHHHHHHcCCCEEEEEEEEEEEEEEEECCCCCCcceeEEEecCcEEEEEeEEEEECCCCC-cee
Confidence 7999999999999999999999999887777999999999999998753 578999999999999999997664 489
Q ss_pred eEEEEEeCCCCeEEceeccCceEeeccEEEEEEeccCCceeeccCCh
Q 040216 164 GLTIYLAGAQGQVVGGVVVGALIASGPVVIMAASFMNATFDRLPLDD 210 (265)
Q Consensus 164 HLHIsLa~~dGqVvGGHL~g~lIAa~tVEVvi~sf~~~~~~Rlp~e~ 210 (265)
|||++|+ .||+++||||.+++| .|+||++.+|.+..|+|++|++
T Consensus 89 HlHi~l~-~~G~v~gGHl~~g~V--~t~Evvi~~~~~~~~~R~~D~e 132 (146)
T 2h6l_A 89 HIHVLLG-KDGEVYGGHLFSAEV--FACEVFVLPLSGEAPERAFDEQ 132 (146)
T ss_dssp EEEEEEE-EBTEEEEEEEEEEEE--EEEEEEEEECBSCCCBEEECTT
T ss_pred eEEEEEC-CCCcEEeeecCCCEE--EEEEEEEEEcCCCcEEEeECCC
Confidence 9999999 999999999998886 5999999999999999999986
No 6
>3hwu_A Putative DNA-binding protein; YP_299413.1, structural genomi center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.30A {Ralstonia eutropha}
Probab=99.95 E-value=1.4e-27 Score=200.04 Aligned_cols=121 Identities=18% Similarity=0.183 Sum_probs=108.7
Q ss_pred ceEEEEeCCCCcHHHHHHHHHHHcCCcEEEEEeeeeeeeEEEeccCCC---CceEEeeceEEEEEeeeeecCCCCCCCCc
Q 040216 87 RAHAMEVSSGCDVSESLANFARRKQRGICILSGSGCVTNVTLRQPATS---GSIVTLHGRFEILSLLGSILPPPAPPGIT 163 (265)
Q Consensus 87 r~hVirl~~GeDIvesI~~far~~~~~~~VLSaiGaVsnVtLr~~~~~---~~~~tleG~fEILSLsGni~~~~~~~~~~ 163 (265)
+.+++||++|+||+++|.+||+++++..++++++|++++++|++++.. +...+++ ++||+||+|||++.++. ++.
T Consensus 13 ~~~~~rL~~Gedl~~~l~~~~~~~~i~~a~v~~iGsl~~~~l~~~~~~~~~y~~~~~~-~~Ei~sl~Gtis~~dG~-p~~ 90 (147)
T 3hwu_A 13 TGYLMVLRHGDNVLQNLEQLARDEHIPSASFVGIGFMSEATFGFYDFGRKQFDPKTYR-NVEMANMTGSIAWKEGK-PSI 90 (147)
T ss_dssp TEEEEEEETTCBHHHHHHHHHHHTTCSEEEEEEEEEEEEEEEEEEETTTTEEEEEEEE-EEEEEEEEEEEEEETTE-EEE
T ss_pred CEEEEEECCCChHHHHHHHHHHHcCCCEEEEEEEecccEEEEEeecCCcCccccEEec-CcEEEEEEEEEEcCCCC-ceE
Confidence 779999999999999999999999999999999999999999998864 4567788 89999999999987654 589
Q ss_pred eEEEEEeCCCCeEEceeccCceEeeccEEEEEEeccCCceeeccCCh
Q 040216 164 GLTIYLAGAQGQVVGGVVVGALIASGPVVIMAASFMNATFDRLPLDD 210 (265)
Q Consensus 164 HLHIsLa~~dGqVvGGHL~g~lIAa~tVEVvi~sf~~~~~~Rlp~e~ 210 (265)
|||++++|.+|+++||||..+.|...|+||+|..+. ..+.|.+|++
T Consensus 91 HlH~~~~d~~g~v~GGHL~~g~V~~~t~Ei~i~~~~-~~~~R~~D~~ 136 (147)
T 3hwu_A 91 HAHGTVTDGTFQGAGGHLLGLTVGTGSCEITVTVYP-QRLDRFVDPE 136 (147)
T ss_dssp EEEEEEECTTCCEEEEEEEEEEEEEEEEEEEEEEES-SCCBEEEETT
T ss_pred EEEEEEECCCCcEEeeEecCcEEEeEeEEEEEEEcC-CeEEEEECCc
Confidence 999999999999999999988665459999999875 4899999876
No 7
>2ezd_A High mobility group protein HMG-I/HMG-Y; DNA binding protein, minor groove DNA binding, transcriptional CO-activator, architectural factor; HET: DNA; NMR {Homo sapiens} SCOP: j.10.1.1 PDB: 2eze_A*
Probab=97.49 E-value=4.5e-05 Score=46.27 Aligned_cols=17 Identities=71% Similarity=1.085 Sum_probs=15.0
Q ss_pred CCCCCCCCCCCCCCCCC
Q 040216 57 TLRRPRGRPAGSKNKPK 73 (265)
Q Consensus 57 ~~~r~rGRP~GSknK~k 73 (265)
..|||||||.|||||.-
T Consensus 3 tpKrpRgRpkGSKNk~~ 19 (26)
T 2ezd_A 3 TPKRPRGRPKGSKNKGA 19 (26)
T ss_dssp SCCCCSSCCTTCCCCSC
T ss_pred CCcCCCCCcCcccccCc
Confidence 46999999999999964
No 8
>1xv2_A ALDC, hypothetical protein, similar to alpha- acetolactate decarboxylase; structural genomics, MCSG; 2.00A {Staphylococcus aureus subsp} SCOP: d.290.1.1
Probab=61.29 E-value=17 Score=32.23 Aligned_cols=108 Identities=15% Similarity=0.210 Sum_probs=59.4
Q ss_pred CcHHHHHHHHHHHcCCcEEEEEeeeeeeeEEEeccCC---CCc----eEEeeceEEEEEeeeeec----CCC-CCCCCce
Q 040216 97 CDVSESLANFARRKQRGICILSGSGCVTNVTLRQPAT---SGS----IVTLHGRFEILSLLGSIL----PPP-APPGITG 164 (265)
Q Consensus 97 eDIvesI~~far~~~~~~~VLSaiGaVsnVtLr~~~~---~~~----~~tleG~fEILSLsGni~----~~~-~~~~~~H 164 (265)
+++-+.|.+.. ..--.+-+---|..++|+.|-... +|. .+.-+-.|++=..+|++. |.- ..-...+
T Consensus 97 ~~l~~~i~~~~--s~N~f~airi~G~F~~v~~R~vp~Q~~Py~~l~e~~~~Q~~f~~~~v~GTivGF~tP~~~~Gi~v~G 174 (237)
T 1xv2_A 97 DVFAQIKNEML--SENLFSAVKIYGTFKHMHVRMMPAQQPPYTRLIDSARRQPEEKRQDIRGAIVGFFTPELFHGVGSAG 174 (237)
T ss_dssp HHHHHHHHHSS--CTTSCEEEEEEEEEEEEEEECCCCCCSSCCCTHHHHTTCCEEEEEEEEEEEEEEEECGGGBTTBCSE
T ss_pred HHHHHHHHhhh--ccccEEEEEEEEEeCeEEEEecCCCCCCCCCHHHHhcCCceEEEeccEEEEEEEecchhhcccCCce
Confidence 34444444433 234567778889999999997532 121 111222366667777764 321 0111344
Q ss_pred EEEEEeCCCCeEEceeccCceEeeccEEEEEEeccCCceeeccCCh
Q 040216 165 LTIYLAGAQGQVVGGVVVGALIASGPVVIMAASFMNATFDRLPLDD 210 (265)
Q Consensus 165 LHIsLa~~dGqVvGGHL~g~lIAa~tVEVvi~sf~~~~~~Rlp~e~ 210 (265)
+|+.+-+.| +.+||||.+-.+.. +.+-+..+.+-. -++|.++
T Consensus 175 ~HlHFisdD-r~~GGHVldf~~~~--~~~~~~~~~~~~-l~lP~~~ 216 (237)
T 1xv2_A 175 FHIHFADDE-RAYGGHVLDFEVDD--VVVEIQNFETFQ-QHFPVNN 216 (237)
T ss_dssp EEEEEEETT-SSCEEEEEEEEEEE--EEEEEEECSEEE-EECCTTC
T ss_pred eEEEEEcCC-CCCCcceEEEEecc--eEEEEeecccEE-EECCCCC
Confidence 555555555 44899999865544 455555544433 3677633
No 9
>4i95_A Putative uncharacterized protein; lipocalin-like domain of PF13924 family, structural genomics center for structural genomics, JCSG; HET: MSE; 1.81A {Bacteroides eggerthii} PDB: 4gzv_A
Probab=34.82 E-value=29 Score=28.78 Aligned_cols=34 Identities=29% Similarity=0.470 Sum_probs=29.1
Q ss_pred cEEEEEeeeeeeeEEEeccCCCCceEEeeceEEEEE
Q 040216 113 GICILSGSGCVTNVTLRQPATSGSIVTLHGRFEILS 148 (265)
Q Consensus 113 ~~~VLSaiGaVsnVtLr~~~~~~~~~tleG~fEILS 148 (265)
..=|||.=|+..|+++.. ...++++..|.||+.|
T Consensus 37 ~lKIlSdDgtF~Ni~m~~--~~~aiIt~~GtY~~~S 70 (142)
T 4i95_A 37 TFKVLSDDGRIVNFTIRP--GTDAIITGYGTYRQIS 70 (142)
T ss_dssp EEEEECTTSEEEEEECCT--TSCCEEEEEEEEEEEE
T ss_pred cEEEEcCCCcEEEEEEec--CCCcEEEEeEEEEecC
Confidence 456899999999999993 2578999999999997
No 10
>2k9i_A Plasmid PRN1, complete sequence; plasmid COPY control protein, ribbon helix helix protein, DNA binding protein; NMR {Sulfolobus islandicus} PDB: 3ft7_A
Probab=28.94 E-value=41 Score=21.77 Aligned_cols=24 Identities=17% Similarity=0.155 Sum_probs=18.6
Q ss_pred EEEeCCCCcHHHHHHHHHHHcCCc
Q 040216 90 AMEVSSGCDVSESLANFARRKQRG 113 (265)
Q Consensus 90 Virl~~GeDIvesI~~far~~~~~ 113 (265)
.+.|.=-+|+.+.|..+|++.+++
T Consensus 11 ~i~vrl~~el~~~l~~~a~~~g~s 34 (55)
T 2k9i_A 11 KLGVYIPQEWHDRLMEIAKEKNLT 34 (55)
T ss_dssp EEEEEECHHHHHHHHHHHHHHTCC
T ss_pred eEEEEcCHHHHHHHHHHHHHhCCC
Confidence 444555589999999999998754
No 11
>1t3g_A X-linked interleukin-1 receptor accessory protein-like 1; TIR, IL-1RAPL, IL-1R, TLR, membrane protein; 2.30A {Homo sapiens}
Probab=24.43 E-value=48 Score=26.82 Aligned_cols=27 Identities=15% Similarity=0.176 Sum_probs=24.0
Q ss_pred eCCCCcHHHHHHHHHHHcCCcEEEEEe
Q 040216 93 VSSGCDVSESLANFARRKQRGICILSG 119 (265)
Q Consensus 93 l~~GeDIvesI~~far~~~~~~~VLSa 119 (265)
+.+|++|.+.|.+-.++-.+.++|||-
T Consensus 51 ~~~G~~i~~~i~~~I~~Sr~~IvVlS~ 77 (159)
T 1t3g_A 51 LIPTGTYIEDVARCVDQSKRLIIVMTP 77 (159)
T ss_dssp CCCCTTHHHHHHHHHHTBSEEEEEECH
T ss_pred ccCccchHHHHHHHHHHcCEEEEEEcc
Confidence 679999999999999888889999874
No 12
>4gzv_A Hypothetical protein; AN eight-stranded beta barrel, lipocalin family, structural joint center for structural genomics, JCSG; 1.95A {Bacteroides ovatus}
Probab=21.12 E-value=70 Score=26.45 Aligned_cols=34 Identities=26% Similarity=0.404 Sum_probs=27.5
Q ss_pred cEEEEEeeeeeeeEEEeccCCCCceEEeeceEEEEE
Q 040216 113 GICILSGSGCVTNVTLRQPATSGSIVTLHGRFEILS 148 (265)
Q Consensus 113 ~~~VLSaiGaVsnVtLr~~~~~~~~~tleG~fEILS 148 (265)
..=|||.=|+..|.++..- +.++++..|.||+.|
T Consensus 37 ~~KIlS~DgtF~N~~m~~~--~~aiIt~yGtY~l~S 70 (142)
T 4gzv_A 37 TFKVLSDDGRIVNFTIIPG--ADAIITGYGTYKQLT 70 (142)
T ss_dssp EEEEECTTSEEEEEECCTT--SCCEEEEEEEEEEEE
T ss_pred ceEEECCCCcEEEEEEeCC--CCcEEEEeEEEEecC
Confidence 3558899999999998432 367899999999997
Done!