BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 040217
(326 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1GP5|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana Complexed
With Trans-Dihydroquercetin
pdb|1GP6|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana Complexed
With Trans-Dihydroquercetin (With 30 Min Exposure To O2)
Length = 356
Score = 49.3 bits (116), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 52/214 (24%), Positives = 84/214 (39%), Gaps = 43/214 (20%)
Query: 27 VKGLAEMGLKSLQKQFHQPLQER-------LSEKKILGQVSIPFINKLKWESPE------ 73
V+ LA+ G+ S+ K++ +P +E L EKK G +P I+ ES +
Sbjct: 7 VESLAKSGIISIPKEYIRPKEELESINDVFLEEKKEDGP-QVPTIDLKNIESDDEKIREN 65
Query: 74 VAKSICDAAESWGFFQIVNHGVPLTLAATWRIFNGFWLSFYLFMILGHLGACLRRKKAFH 133
+ + A+ WG ++NHG+P L R KKA
Sbjct: 66 CIEELKKASLDWGVMHLINHGIPADLME-------------------------RVKKAGE 100
Query: 134 DIFYPFGYEKRKYSKENSPTNNVRFGSSFVRHVERALDWKDS-LSLFYVSEEETAAFWPP 192
+ F EK KY+ + + +GS + L+W+D L Y E+ + WP
Sbjct: 101 EFFSLSVEEKEKYANDQATGKIQGYGSKLANNASGQLEWEDYFFHLAYPEEKRDLSIWPK 160
Query: 193 VCKD---EMLEYRKSSEVLIKRLMHVLVKGLNVK 223
D EY K +L ++ L GL ++
Sbjct: 161 TPSDYIEATSEYAKCLRLLATKVFKALSVGLGLE 194
>pdb|2BRT|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana Complexed
With Naringenin
Length = 355
Score = 49.3 bits (116), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 52/214 (24%), Positives = 84/214 (39%), Gaps = 43/214 (20%)
Query: 27 VKGLAEMGLKSLQKQFHQPLQER-------LSEKKILGQVSIPFINKLKWESPE------ 73
V+ LA+ G+ S+ K++ +P +E L EKK G +P I+ ES +
Sbjct: 6 VESLAKSGIISIPKEYIRPKEELESINDVFLEEKKEDGP-QVPTIDLKNIESDDEKIREN 64
Query: 74 VAKSICDAAESWGFFQIVNHGVPLTLAATWRIFNGFWLSFYLFMILGHLGACLRRKKAFH 133
+ + A+ WG ++NHG+P L R KKA
Sbjct: 65 CIEELKKASLDWGVMHLINHGIPADLME-------------------------RVKKAGE 99
Query: 134 DIFYPFGYEKRKYSKENSPTNNVRFGSSFVRHVERALDWKDS-LSLFYVSEEETAAFWPP 192
+ F EK KY+ + + +GS + L+W+D L Y E+ + WP
Sbjct: 100 EFFSLSVEEKEKYANDQATGKIQGYGSKLANNASGQLEWEDYFFHLAYPEEKRDLSIWPK 159
Query: 193 VCKD---EMLEYRKSSEVLIKRLMHVLVKGLNVK 223
D EY K +L ++ L GL ++
Sbjct: 160 TPSDYIEATSEYAKCLRLLATKVFKALSVGLGLE 193
>pdb|1GP4|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana
(Selenomethionine Substituted)
Length = 356
Score = 48.5 bits (114), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 52/214 (24%), Positives = 84/214 (39%), Gaps = 43/214 (20%)
Query: 27 VKGLAEMGLKSLQKQFHQPLQER-------LSEKKILGQVSIPFINKLKWESPE------ 73
V+ LA+ G+ S+ K++ +P +E L EKK G +P I+ ES +
Sbjct: 7 VESLAKSGIISIPKEYIRPKEELESINDVFLEEKKEDGP-QVPTIDLKNIESDDEKIREN 65
Query: 74 VAKSICDAAESWGFFQIVNHGVPLTLAATWRIFNGFWLSFYLFMILGHLGACLRRKKAFH 133
+ + A+ WG ++NHG+P L R KKA
Sbjct: 66 CIEELKKASLDWGVXHLINHGIPADLXE-------------------------RVKKAGE 100
Query: 134 DIFYPFGYEKRKYSKENSPTNNVRFGSSFVRHVERALDWKDS-LSLFYVSEEETAAFWPP 192
+ F EK KY+ + + +GS + L+W+D L Y E+ + WP
Sbjct: 101 EFFSLSVEEKEKYANDQATGKIQGYGSKLANNASGQLEWEDYFFHLAYPEEKRDLSIWPK 160
Query: 193 VCKD---EMLEYRKSSEVLIKRLMHVLVKGLNVK 223
D EY K +L ++ L GL ++
Sbjct: 161 TPSDYIEATSEYAKCLRLLATKVFKALSVGLGLE 194
Score = 34.3 bits (77), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 34/68 (50%), Gaps = 1/68 (1%)
Query: 235 DALQIIRNGRYKSFEHYVIGNGSQNRISVPLFVN-LKPEAILCPFPKVLANGEKPLYKPV 293
D L+I+ NG+YKS H + N + RIS +F K + +L P P+ ++ + P
Sbjct: 273 DTLEILSNGKYKSILHRGLVNKEKVRISWAVFCEPPKDKIVLKPLPEXVSVESPAKFPPR 332
Query: 294 LCADYSRH 301
A + H
Sbjct: 333 TFAQHIEH 340
>pdb|1W9Y|A Chain A, The Structure Of Acc Oxidase
pdb|1WA6|X Chain X, The Structure Of Acc Oxidase
Length = 319
Score = 42.0 bits (97), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 37/73 (50%), Gaps = 3/73 (4%)
Query: 233 LLDALQIIRNGRYKSFEHYVIGNGSQNRISVPLFVNLKPEAILCPFPKVL---ANGEKPL 289
L D L++I NG+YKS H VI R S+ F N +A++ P P ++ A K +
Sbjct: 217 LGDQLEVITNGKYKSVXHRVIAQKDGARXSLASFYNPGSDAVIYPAPALVEKEAEENKQV 276
Query: 290 YKPVLCADYSRHF 302
Y + DY + +
Sbjct: 277 YPKFVFDDYXKLY 289
Score = 38.5 bits (88), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 21/33 (63%)
Query: 70 ESPEVAKSICDAAESWGFFQIVNHGVPLTLAAT 102
E + I DA E+WGFF++VNHG+P + T
Sbjct: 16 ERAATXEXIKDACENWGFFELVNHGIPREVXDT 48
>pdb|3ON7|A Chain A, Crystal Structure Of A Putative Oxygenase (So_2589) From
Shewanella Oneidensis At 2.20 A Resolution
pdb|3ON7|B Chain B, Crystal Structure Of A Putative Oxygenase (So_2589) From
Shewanella Oneidensis At 2.20 A Resolution
pdb|3ON7|C Chain C, Crystal Structure Of A Putative Oxygenase (So_2589) From
Shewanella Oneidensis At 2.20 A Resolution
pdb|3ON7|D Chain D, Crystal Structure Of A Putative Oxygenase (So_2589) From
Shewanella Oneidensis At 2.20 A Resolution
Length = 280
Score = 30.8 bits (68), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 26/46 (56%), Gaps = 4/46 (8%)
Query: 235 DALQIIRNGRYKSFEHYVIG----NGSQNRISVPLFVNLKPEAILC 276
D LQ +G + S H VI + +++RIS+PLF++ P +L
Sbjct: 216 DXLQEASDGYFPSTSHRVINPEGTDKTKSRISLPLFLHPHPSVVLS 261
>pdb|1UYS|A Chain A, Acetyl-Coa Carboxylase Carboxyltransferase Domain In
Complex With Inhibitor Haloxyfop
pdb|1UYS|B Chain B, Acetyl-Coa Carboxylase Carboxyltransferase Domain In
Complex With Inhibitor Haloxyfop
pdb|1UYS|C Chain C, Acetyl-Coa Carboxylase Carboxyltransferase Domain In
Complex With Inhibitor Haloxyfop
Length = 737
Score = 28.5 bits (62), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 16/60 (26%), Positives = 31/60 (51%), Gaps = 5/60 (8%)
Query: 31 AEMGLKSLQKQFHQPLQERLSEKK-----ILGQVSIPFINKLKWESPEVAKSICDAAESW 85
+++ KSL + HQ + ++L++++ I GQ+S+ F + S VAK + W
Sbjct: 575 SQLSNKSLAPEVHQQISKQLADRERELLPIYGQISLQFADLHDRSSRXVAKGVISKELEW 634
>pdb|1OD2|A Chain A, Acetyl-Coa Carboxylase Carboxyltransferase Domain
pdb|1OD2|B Chain B, Acetyl-Coa Carboxylase Carboxyltransferase Domain
pdb|1OD4|A Chain A, Acetyl-Coa Carboxylase Carboxyltransferase Domain
pdb|1OD4|B Chain B, Acetyl-Coa Carboxylase Carboxyltransferase Domain
pdb|1OD4|C Chain C, Acetyl-Coa Carboxylase Carboxyltransferase Domain
Length = 805
Score = 28.5 bits (62), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 16/60 (26%), Positives = 31/60 (51%), Gaps = 5/60 (8%)
Query: 31 AEMGLKSLQKQFHQPLQERLSEKK-----ILGQVSIPFINKLKWESPEVAKSICDAAESW 85
+++ KSL + HQ + ++L++++ I GQ+S+ F + S VAK + W
Sbjct: 628 SQLSNKSLAPEVHQQISKQLADRERELLPIYGQISLQFADLHDRSSRXVAKGVISKELEW 687
>pdb|3DUL|A Chain A, Crystal Structure Analysis Of The O-Methyltransferase From
Bacillus Cereus
pdb|3DUL|B Chain B, Crystal Structure Analysis Of The O-Methyltransferase From
Bacillus Cereus
pdb|3DUW|A Chain A, Crystal Structural Analysis Of The O-Methyltransferase
From Bacillus Cereus In Complex Sah
pdb|3DUW|B Chain B, Crystal Structural Analysis Of The O-Methyltransferase
From Bacillus Cereus In Complex Sah
Length = 223
Score = 28.5 bits (62), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 26/51 (50%), Gaps = 5/51 (9%)
Query: 214 HVLVKGLNVKRID-----EIRALMLLDALQIIRNGRYKSFEHYVIGNGSQN 259
H + N++R + E+R + LD+LQ I N +Y+ F+ I QN
Sbjct: 95 HADIARSNIERANLNDRVEVRTGLALDSLQQIENEKYEPFDFIFIDADKQN 145
>pdb|2VOB|A Chain A, Trypanothione Synthetase
pdb|2VOB|B Chain B, Trypanothione Synthetase
pdb|2VPS|A Chain A, Structure Of The Bifunctional Leishmania Major
Trypanothione Synthetase-Amidase
Length = 652
Score = 27.7 bits (60), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 11/36 (30%), Positives = 21/36 (58%)
Query: 163 VRHVERALDWKDSLSLFYVSEEETAAFWPPVCKDEM 198
VR+V + W+ +++ +Y + EE W P KD++
Sbjct: 451 VRNVWKTWMWESAITDYYAAREERGENWKPSPKDKV 486
>pdb|2VPM|A Chain A, Trypanothione Synthetase
pdb|2VPM|B Chain B, Trypanothione Synthetase
Length = 653
Score = 27.7 bits (60), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 11/36 (30%), Positives = 21/36 (58%)
Query: 163 VRHVERALDWKDSLSLFYVSEEETAAFWPPVCKDEM 198
VR+V + W+ +++ +Y + EE W P KD++
Sbjct: 452 VRNVWKTWMWESAITDYYAAREERGENWKPSPKDKV 487
>pdb|2XN0|A Chain A, Structure Of Alpha-Galactosidase From Lactobacillus
Acidophilus Ncfm, Ptcl4 Derivative
pdb|2XN0|B Chain B, Structure Of Alpha-Galactosidase From Lactobacillus
Acidophilus Ncfm, Ptcl4 Derivative
pdb|2XN1|A Chain A, Structure Of Alpha-Galactosidase From Lactobacillus
Acidophilus Ncfm With Tris
pdb|2XN1|B Chain B, Structure Of Alpha-Galactosidase From Lactobacillus
Acidophilus Ncfm With Tris
pdb|2XN1|C Chain C, Structure Of Alpha-Galactosidase From Lactobacillus
Acidophilus Ncfm With Tris
pdb|2XN1|D Chain D, Structure Of Alpha-Galactosidase From Lactobacillus
Acidophilus Ncfm With Tris
Length = 732
Score = 27.7 bits (60), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 17/67 (25%), Positives = 29/67 (43%), Gaps = 8/67 (11%)
Query: 31 AEMGLKSLQKQFHQPLQERLSEKKILGQVSIPFINKLKWESP------EVAKSICDAAES 84
++ GL + + FH + ER+ K Q+ +N WE+ + K+I D A+
Sbjct: 304 SDQGLNKMSQAFHSLIHERIMRSKFKDQIRPVLVN--NWEATYFDFNEDKLKTIVDKAKK 361
Query: 85 WGFFQIV 91
G V
Sbjct: 362 LGLEMFV 368
>pdb|2XN2|A Chain A, Structure Of Alpha-Galactosidase From Lactobacillus
Acidophilus Ncfm With Galactose
Length = 732
Score = 27.7 bits (60), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 17/67 (25%), Positives = 29/67 (43%), Gaps = 8/67 (11%)
Query: 31 AEMGLKSLQKQFHQPLQERLSEKKILGQVSIPFINKLKWESP------EVAKSICDAAES 84
++ GL + + FH + ER+ K Q+ +N WE+ + K+I D A+
Sbjct: 304 SDQGLNKMSQAFHSLIHERIMRSKFKDQIRPVLVN--NWEATYFDFNEDKLKTIVDKAKK 361
Query: 85 WGFFQIV 91
G V
Sbjct: 362 LGLEMFV 368
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.138 0.429
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,964,777
Number of Sequences: 62578
Number of extensions: 401999
Number of successful extensions: 909
Number of sequences better than 100.0: 14
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 893
Number of HSP's gapped (non-prelim): 20
length of query: 326
length of database: 14,973,337
effective HSP length: 99
effective length of query: 227
effective length of database: 8,778,115
effective search space: 1992632105
effective search space used: 1992632105
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 51 (24.3 bits)