Query 040217
Match_columns 326
No_of_seqs 224 out of 1970
Neff 6.2
Searched_HMMs 29240
Date Mon Mar 25 09:39:13 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040217.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/040217hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1gp6_A Leucoanthocyanidin diox 100.0 1.5E-58 5.2E-63 449.3 21.2 263 24-311 4-350 (356)
2 1w9y_A 1-aminocyclopropane-1-c 100.0 1E-52 3.6E-57 402.9 14.8 227 60-319 3-307 (319)
3 3oox_A Putative 2OG-Fe(II) oxy 100.0 2.3E-51 7.7E-56 392.0 20.7 221 59-306 5-309 (312)
4 1dcs_A Deacetoxycephalosporin 100.0 6.1E-48 2.1E-52 368.4 13.4 218 59-309 3-308 (311)
5 1odm_A Isopenicillin N synthas 100.0 3.9E-46 1.3E-50 358.6 20.2 212 59-307 7-325 (331)
6 3on7_A Oxidoreductase, iron/as 100.0 1.1E-43 3.8E-48 334.5 18.9 196 59-306 2-277 (280)
7 2opi_A L-fuculose-1-phosphate 48.3 11 0.00037 32.8 3.0 36 60-95 125-160 (212)
8 2fk5_A Fuculose-1-phosphate al 42.9 17 0.00057 31.5 3.3 36 60-95 117-153 (200)
9 1e4c_P L-fuculose 1-phosphate 41.7 16 0.00054 31.8 3.0 37 59-95 121-157 (215)
10 1pvt_A Sugar-phosphate aldolas 41.0 18 0.00062 32.0 3.3 37 59-95 160-196 (238)
11 2v9l_A Rhamnulose-1-phosphate 36.8 19 0.00066 32.6 2.9 36 60-95 179-214 (274)
12 4ay7_A Methylcobalamin\: coenz 36.1 44 0.0015 30.9 5.4 47 70-134 302-348 (348)
13 2irp_A Putative aldolase class 30.1 29 0.00097 29.9 2.7 36 59-95 138-176 (208)
14 2rg4_A Uncharacterized protein 26.8 34 0.0012 29.9 2.6 33 233-271 175-209 (216)
15 1m5a_B Insulin B chain; alpha 26.2 61 0.0021 19.9 2.9 18 72-89 9-26 (30)
16 2vf9_A Coat protein; virion, R 24.8 20 0.00068 28.0 0.6 18 237-254 49-66 (131)
17 2dbn_A Hypothetical protein YB 23.7 24 0.00081 34.9 1.1 46 56-102 96-141 (461)
18 3ocr_A Class II aldolase/adduc 23.1 50 0.0017 30.0 3.1 36 60-95 156-192 (273)
No 1
>1gp6_A Leucoanthocyanidin dioxygenase; 2-oxoglutarate dependent dioxygenase, flavonoid biosynthesis; HET: MES QUE DH2; 1.75A {Arabidopsis thaliana} SCOP: b.82.2.1 PDB: 1gp5_A* 1gp4_A* 2brt_A*
Probab=100.00 E-value=1.5e-58 Score=449.30 Aligned_cols=263 Identities=23% Similarity=0.389 Sum_probs=231.1
Q ss_pred CcchHHHHhcCCCcccccccCCCcccccccc---cC---CCCCcceeeCCC--C----CcHHHHHHHHHHHhhcCeEEEe
Q 040217 24 GHGVKGLAEMGLKSLQKQFHQPLQERLSEKK---IL---GQVSIPFINKLK--W----ESPEVAKSICDAAESWGFFQIV 91 (326)
Q Consensus 24 ~~~v~~l~~~~~~~~p~~y~~p~~~~~~~~~---~~---~~~~IPvIDls~--~----~~~~~~~~l~~A~~~~GFF~lv 91 (326)
.++||+|+++|+++||++|++|+++++.... .. ...+||||||+. . ++.+++++|.+||++||||||+
T Consensus 4 ~~~v~~l~~~~~~~vP~~~~~p~~~~~~~~~~~~~~~~~~~~~iPvIDls~l~~~~~~~~~~~~~~l~~A~~~~GFF~v~ 83 (356)
T 1gp6_A 4 VERVESLAKSGIISIPKEYIRPKEELESINDVFLEEKKEDGPQVPTIDLKNIESDDEKIRENCIEELKKASLDWGVMHLI 83 (356)
T ss_dssp CCCHHHHHHTTCSSCCGGGSCCHHHHTTCCCHHHHHHCCCSCCCCEEECTTTTCSCHHHHHHHHHHHHHHHHHTSEEEEE
T ss_pred cccHHHHHhcCCCCCCHHhcCCchhcccccccccccccccCCCCCEEEchhccCCChHHHHHHHHHHHHHHHhCCEEEEe
Confidence 4689999999999999999999888765321 11 124699999987 1 2456899999999999999999
Q ss_pred cCCCCHHHHhhhhhccccchhhHHHHHhhhHHHHHHHHHHhhccCCCChhhhhhcccCCCCCCccccccCccccccCCCC
Q 040217 92 NHGVPLTLAATWRIFNGFWLSFYLFMILGHLGACLRRKKAFHDIFYPFGYEKRKYSKENSPTNNVRFGSSFVRHVERALD 171 (326)
Q Consensus 92 nHGI~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~FF~L~~P~~eeK~~~~~~~~p~~~~Gy~~~~~~~~~~~~d 171 (326)
|||||.+++++ +++.+++||+| | .|+|++|.........+||+........+..|
T Consensus 84 nHGi~~~l~~~----------------------~~~~~~~FF~l--P-~eeK~~~~~~~~~~~~~Gy~~~~~~~~~~~~d 138 (356)
T 1gp6_A 84 NHGIPADLMER----------------------VKKAGEEFFSL--S-VEEKEKYANDQATGKIQGYGSKLANNASGQLE 138 (356)
T ss_dssp SCSCCHHHHHH----------------------HHHHHHHHHTS--C-HHHHGGGBCBGGGTBCSEEECCCCCSTTCCCC
T ss_pred CCCCCHHHHHH----------------------HHHHHHHHHCC--C-HHHHHhhcccccccCccccCcCcccCCCCCCC
Confidence 99999999999 99999999999 9 99999998753103578998876555667899
Q ss_pred ceecccccccchh-hhccCCCc---hhHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCC----------------------
Q 040217 172 WKDSLSLFYVSEE-ETAAFWPP---VCKDEMLEYRKSSEVLIKRLMHVLVKGLNVKRI---------------------- 225 (326)
Q Consensus 172 w~E~~~~~~~p~~-~~~~~wP~---~fr~~~~~y~~~~~~la~~lL~~la~~Lgl~~~---------------------- 225 (326)
|+|+|++...|.. ..++.||+ .||+.+++|+++|.+|+.+||++|+++||++++
T Consensus 139 ~kE~~~~~~~p~~~~~~~~wP~~~~~fr~~~~~y~~~~~~l~~~ll~~la~~Lgl~~~~f~~~~~~~~~~~~~lrl~~YP 218 (356)
T 1gp6_A 139 WEDYFFHLAYPEEKRDLSIWPKTPSDYIEATSEYAKCLRLLATKVFKALSVGLGLEPDRLEKEVGGLEELLLQMKINYYP 218 (356)
T ss_dssp SCEEEEEEEESGGGCCGGGSCCSSTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTHHHHHTTHHHHCEEEEEEEEEC
T ss_pred hhheeeeecCCccccccccCCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHhcccCCccceeeeeecC
Confidence 9999999876653 45788997 899999999999999999999999999999864
Q ss_pred -------------------------Ccccccc--------------------hhhhHHHhhCCccccccceeecCCCCCe
Q 040217 226 -------------------------DEIRALM--------------------LLDALQIIRNGRYKSFEHYVIGNGSQNR 260 (326)
Q Consensus 226 -------------------------d~v~GLQ--------------------vGD~Le~~SNG~~kS~~HRVv~~~~~~R 260 (326)
|+++||| +||+||+||||+|||++|||+++++++|
T Consensus 219 p~~~~~~~~g~~~HtD~g~lTlL~qd~v~GLQV~~~g~Wi~V~p~pgalvVNiGD~l~~~TnG~~kS~~HRVv~~~~~~R 298 (356)
T 1gp6_A 219 KCPQPELALGVEAHTDVSALTFILHNMVPGLQLFYEGKWVTAKCVPDSIVMHIGDTLEILSNGKYKSILHRGLVNKEKVR 298 (356)
T ss_dssp CCSSTTTCCSEEEECCCSSEEEEEECSCCCEEEEETTEEEECCCCTTCEEEEECHHHHHHTTTSSCCCCEEECCCSSCCE
T ss_pred CCCCcccccCcCCccCCCeEEEEEEcCCCCeEEecCCcEEECcCCCCeEEEEeccHHHHhcCCEeeccCceecCCCCCCE
Confidence 6799999 9999999999999999999999988999
Q ss_pred eEEEeeecCCCCc-eeecCcccccCCCCCCCCCccHHHHHHHHHHhccCCCC
Q 040217 261 ISVPLFVNLKPEA-ILCPFPKVLANGEKPLYKPVLCADYSRHFYTKAHVGNK 311 (326)
Q Consensus 261 ~Sia~F~~P~~d~-~I~Plp~~v~~~~p~~y~~vt~~dyl~~~~~~~~~g~~ 311 (326)
|||+||++|+.|+ +|+|+++++++++|++|+++|++||+..++.+++.|+.
T Consensus 299 ~Sia~F~~P~~d~~~i~pl~~~~~~~~p~~y~~~t~~eyl~~~~~~~~d~~~ 350 (356)
T 1gp6_A 299 ISWAVFCEPPKDKIVLKPLPEMVSVESPAKFPPRTFAQHIEHKLFGKEQEEL 350 (356)
T ss_dssp EEEEEEEECCTTTCEECCCGGGCCSSSCCSSCCEEHHHHHHHHHHHHHHHHC
T ss_pred EEEEEeecCCCCCcEEeCChhhcCCCCCccCCCccHHHHHHHHHHhccCcch
Confidence 9999999999999 99999999999999999999999999999988876654
No 2
>1w9y_A 1-aminocyclopropane-1-carboxylate oxidase 1; oxygenase, 2OG oxygenase, ACCO, ACC oxidase; 2.1A {Petunia hybrida} SCOP: b.82.2.1 PDB: 1wa6_X
Probab=100.00 E-value=1e-52 Score=402.85 Aligned_cols=227 Identities=25% Similarity=0.399 Sum_probs=199.8
Q ss_pred CcceeeCCC---CCcHHHHHHHHHHHhhcCeEEEecCCCCHHHHhhhhhccccchhhHHHHHhhhHHHHHHHHHHhhccC
Q 040217 60 SIPFINKLK---WESPEVAKSICDAAESWGFFQIVNHGVPLTLAATWRIFNGFWLSFYLFMILGHLGACLRRKKAFHDIF 136 (326)
Q Consensus 60 ~IPvIDls~---~~~~~~~~~l~~A~~~~GFF~lvnHGI~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~FF~L~ 136 (326)
+||||||+. .++.+++++|.+||++||||||+|||||.+++++ +++.+++||+|
T Consensus 3 ~iPvIDls~l~~~~~~~~~~~l~~A~~~~GFF~v~nHGi~~~l~~~----------------------~~~~~~~FF~l- 59 (319)
T 1w9y_A 3 NFPIISLDKVNGVERAATMEMIKDACENWGFFELVNHGIPREVMDT----------------------VEKMTKGHYKK- 59 (319)
T ss_dssp CCCEEEGGGGGSTTHHHHHHHHHHHHHHTSEEEEESCSSCHHHHHH----------------------HHHHHHHHHHH-
T ss_pred CCCEEECcccCcccHHHHHHHHHHHHHhCCEEEEEcCCCCHHHHHH----------------------HHHHHHHHHcC-
Confidence 699999986 3578899999999999999999999999999999 99999999999
Q ss_pred CCChhhhhhcccCCCCCCccccccCccccccCCCCceecccccccchhhhccCCCc---hhHHHHHHHHHHHHHHHHHHH
Q 040217 137 YPFGYEKRKYSKENSPTNNVRFGSSFVRHVERALDWKDSLSLFYVSEEETAAFWPP---VCKDEMLEYRKSSEVLIKRLM 213 (326)
Q Consensus 137 ~P~~eeK~~~~~~~~p~~~~Gy~~~~~~~~~~~~dw~E~~~~~~~p~~~~~~~wP~---~fr~~~~~y~~~~~~la~~lL 213 (326)
| .|+|+++... ..||.... ...+..||+|+|.+...|.. .++.||+ .||+++++|+++|.+|+.+||
T Consensus 60 -P-~e~K~~~~~~-----~~Gy~~~~--~e~~~~d~ke~~~~~~~p~~-~~~~wP~~~~~fr~~~~~y~~~~~~l~~~ll 129 (319)
T 1w9y_A 60 -C-MEQRFKELVA-----SKALEGVQ--AEVTDMDWESTFFLKHLPIS-NISEVPDLDEEYREVMRDFAKRLEKLAEELL 129 (319)
T ss_dssp -H-HHHHHHHHHH-----HHHHTTCC--CCGGGCCCCEEEEEEEESCC-GGGGCTTCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -C-HHHHhhhccC-----CCCCCccc--ccCCCCChhhheeeecCCcc-cccccccchhHHHHHHHHHHHHHHHHHHHHH
Confidence 9 9999998642 35887542 23467899999998776643 4678997 899999999999999999999
Q ss_pred HHHHhhcCCCCC-----------------------------------------------C-cccccc-------------
Q 040217 214 HVLVKGLNVKRI-----------------------------------------------D-EIRALM------------- 232 (326)
Q Consensus 214 ~~la~~Lgl~~~-----------------------------------------------d-~v~GLQ------------- 232 (326)
++|+++||++++ | +++|||
T Consensus 130 ~~la~~Lgl~~~~f~~~~~~~~~~~~~lrl~~YPp~~~~~~~~g~~~HtD~g~lTlL~qd~~v~GLQV~~~g~Wi~V~p~ 209 (319)
T 1w9y_A 130 DLLCENLGLEKGYLKNAFYGSKGPNFGTKVSNYPPCPKPDLIKGLRAHTDAGGIILLFQDDKVSGLQLLKDGQWIDVPPM 209 (319)
T ss_dssp HHHHHHHTCCTTHHHHHHHTTTCCEEEEEEEECCCCSCGGGGSSCCCBCCSSSEEEEEESSSCCCEEEEETTEEEECCCC
T ss_pred HHHHHHcCCCHHHHHHHhcCcCCccceeEEEecCCCcccccccccccccCCCceEEEEecCCCCeeeEeeCCeEEEcccC
Confidence 999999999854 3 699999
Q ss_pred -------hhhhHHHhhCCccccccceeecCCCCCeeEEEeeecCCCCceeecCcccccCC---CCCCCCCccHHHHHHHH
Q 040217 233 -------LLDALQIIRNGRYKSFEHYVIGNGSQNRISVPLFVNLKPEAILCPFPKVLANG---EKPLYKPVLCADYSRHF 302 (326)
Q Consensus 233 -------vGD~Le~~SNG~~kS~~HRVv~~~~~~R~Sia~F~~P~~d~~I~Plp~~v~~~---~p~~y~~vt~~dyl~~~ 302 (326)
+||+||+||||+|||++|||+++++++|||||||++|+.|++|.|++++++++ +|++|+++|++||+..+
T Consensus 210 pgalvVNiGD~l~~~SnG~~kS~~HRVv~~~~~~R~Sia~F~~p~~d~~i~pl~~l~~~~~~~~p~~Y~~~t~~ey~~~~ 289 (319)
T 1w9y_A 210 RHSIVVNLGDQLEVITNGKYKSVMHRVIAQKDGARMSLASFYNPGSDAVIYPAPALVEKEAEENKQVYPKFVFDDYMKLY 289 (319)
T ss_dssp TTCEEEEECHHHHHHTTTSSCCCCEEECCCSSSCCEEEEEEEECCTTCEECCCGGGC--------CCCCCEEHHHHHHTT
T ss_pred CCcEEEEhHHHHHHHhCCeeecccceecCCCCCCceEEEEEecCCCCCeEeCchhhcCcccccCccccCcEeHHHHHHHH
Confidence 99999999999999999999999889999999999999999999999999987 59999999999999999
Q ss_pred HHhccCCCCc-ccccccc
Q 040217 303 YTKAHVGNKT-IDFAKIS 319 (326)
Q Consensus 303 ~~~~~~g~~~-~d~~ki~ 319 (326)
++..+.++.. ++.+||.
T Consensus 290 ~~~~~~~~~~~~~~~~~~ 307 (319)
T 1w9y_A 290 AGLKFQAKEPRFEAMKAM 307 (319)
T ss_dssp TTTTCSSHHHHHHHHHHC
T ss_pred HhhhcCcchhHHHHHHHH
Confidence 9999988865 6888774
No 3
>3oox_A Putative 2OG-Fe(II) oxygenase family protein; structural genomics, joint center for structural genomics; HET: MSE; 1.44A {Caulobacter crescentus CB15}
Probab=100.00 E-value=2.3e-51 Score=391.97 Aligned_cols=221 Identities=15% Similarity=0.184 Sum_probs=194.3
Q ss_pred CCcceeeCCC--CCcHHHHHHHHHHHhhcCeEEEecCCCCHHHHhhhhhccccchhhHHHHHhhhHHHHHHHHHHhhccC
Q 040217 59 VSIPFINKLK--WESPEVAKSICDAAESWGFFQIVNHGVPLTLAATWRIFNGFWLSFYLFMILGHLGACLRRKKAFHDIF 136 (326)
Q Consensus 59 ~~IPvIDls~--~~~~~~~~~l~~A~~~~GFF~lvnHGI~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~FF~L~ 136 (326)
.+||||||+. .++++++++|.+||++||||||+|||||.+++++ +++.+++||+|
T Consensus 5 ~~iPvIDls~~~~~~~~~~~~l~~A~~~~GFf~v~nHGi~~~~~~~----------------------~~~~~~~fF~l- 61 (312)
T 3oox_A 5 SAIDPVSFSLYAKDFTRFAQELGASFERYGFAVLSDYDLDQARIDA----------------------AVDSAKAFFAL- 61 (312)
T ss_dssp CSSCCEETHHHHHCHHHHHHHHHHHHHHHSEEEEESCCSCHHHHHH----------------------HHHHHHHHHTS-
T ss_pred CCCCeEEChHhcccHHHHHHHHHHHHHhCcEEEEECCCCCHHHHHH----------------------HHHHHHHHHCC-
Confidence 5799999986 3678899999999999999999999999999999 99999999999
Q ss_pred CCChhhhhhcccCCCCCCccccccCcccc--ccCCCCceeccccccc-chh------hhccCCCc---hhHHHHHHHHHH
Q 040217 137 YPFGYEKRKYSKENSPTNNVRFGSSFVRH--VERALDWKDSLSLFYV-SEE------ETAAFWPP---VCKDEMLEYRKS 204 (326)
Q Consensus 137 ~P~~eeK~~~~~~~~p~~~~Gy~~~~~~~--~~~~~dw~E~~~~~~~-p~~------~~~~~wP~---~fr~~~~~y~~~ 204 (326)
| .|+|+++... +...+||....... ..+..||+|+|.+... +.. ..++.||+ .||+++++|+++
T Consensus 62 -P-~e~K~~~~~~--~~~~~Gy~~~g~e~~~~~~~~D~kE~~~~~~~~~~~~~~~~~~~~n~wP~~~p~fr~~~~~y~~~ 137 (312)
T 3oox_A 62 -P-VETKKQYAGV--KGGARGYIPFGVETAKGADHYDLKEFWHMGRDLPPGHRFRAHMADNVWPAEIPAFKHDVSWLYNS 137 (312)
T ss_dssp -C-HHHHGGGBSS--GGGTSEEECCCCCCSTTSCSCCCCEEEEECCCCCTTCGGGGTSCCCCCCTTSTTHHHHHHHHHHH
T ss_pred -C-HHHHhhhccC--CCCccccccccceecCCCCCCCceeeeEeecCCCcCCcchhccCCCCCCCcCHHHHHHHHHHHHH
Confidence 9 9999999874 24678996543221 2356899999988642 211 23678997 899999999999
Q ss_pred HHHHHHHHHHHHHhhcCCCCC--------------------------------------------Ccccccc--------
Q 040217 205 SEVLIKRLMHVLVKGLNVKRI--------------------------------------------DEIRALM-------- 232 (326)
Q Consensus 205 ~~~la~~lL~~la~~Lgl~~~--------------------------------------------d~v~GLQ-------- 232 (326)
|.+|+.+||++|+++||++++ |+++|||
T Consensus 138 ~~~l~~~ll~~la~~Lgl~~~~f~~~~~~~~~~lr~~~Ypp~~~~~~~~g~~~HtD~g~lTlL~qd~v~GLqV~~~~g~W 217 (312)
T 3oox_A 138 LDGMGGKVLEAIATYLKLERDFFKPTVQDGNSVLRLLHYPPIPKDATGVRAGAHGDINTITLLLGAEEGGLEVLDRDGQW 217 (312)
T ss_dssp HHHHHHHHHHHHHHHTTSCTTTTHHHHTTCCCEEEEEEECCCSSCCC--CEEEECCCSSEEEEECCTTSCEEEECTTSCE
T ss_pred HHHHHHHHHHHHHHHhCcCHHHHHHHhcCCcceeeeEecCCCCCCcCCcCccceecCceEEEEeEcCcCceEEECCCCcE
Confidence 999999999999999999875 6799999
Q ss_pred -------------hhhhHHHhhCCccccccceeecCC----CCCeeEEEeeecCCCCceeecCcccccCCCCCCCC-Ccc
Q 040217 233 -------------LLDALQIIRNGRYKSFEHYVIGNG----SQNRISVPLFVNLKPEAILCPFPKVLANGEKPLYK-PVL 294 (326)
Q Consensus 233 -------------vGD~Le~~SNG~~kS~~HRVv~~~----~~~R~Sia~F~~P~~d~~I~Plp~~v~~~~p~~y~-~vt 294 (326)
|||+||+||||+|||++|||+.++ ..+|||||||++|+.|++|+|+++++++++|++|+ ++|
T Consensus 218 ~~V~p~pg~~vVNiGD~l~~~TnG~~kS~~HRVv~~~~~~~~~~R~Sia~F~~P~~d~~i~pl~~~v~~~~p~~y~~~~t 297 (312)
T 3oox_A 218 LPINPPPGCLVINIGDMLERLTNNVLPSTVHRVVNPPPERRGVPRYSTPFFLHFASDYEIKTLQNCVTAENPDRYPESIT 297 (312)
T ss_dssp EECCCCSSCEEEEECHHHHHHTTTSSCCCCEEECCCCGGGTTSCEEECCEEECCCTTCEECCCGGGCCSSSCCSCSSCEE
T ss_pred EECCCCCCeEEEEhHHHHHHHhCCeecCCCceEeCCCccCCCCCEEEEEEEecCCCCcEEecCccccCCCCcccCCCCee
Confidence 999999999999999999998763 46799999999999999999999999999999999 999
Q ss_pred HHHHHHHHHHhc
Q 040217 295 CADYSRHFYTKA 306 (326)
Q Consensus 295 ~~dyl~~~~~~~ 306 (326)
++||+..++...
T Consensus 298 ~~eyl~~r~~~~ 309 (312)
T 3oox_A 298 ADEFLQQRLREI 309 (312)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh
Confidence 999999998753
No 4
>1dcs_A Deacetoxycephalosporin C synthase; ferrous oxygenase, 2-oxoglutarate, oxidoreduc antibiotics, merohedral twinning; 1.30A {Streptomyces clavuligerus} SCOP: b.82.2.1 PDB: 1rxf_A 1rxg_A* 1unb_A* 1uo9_A 1uob_A* 1uof_A* 1uog_A* 2jb8_A 1w28_A 1w2a_X 1w2n_A* 1w2o_A* 1hjg_A 1hjf_A 1e5h_A 1e5i_A*
Probab=100.00 E-value=6.1e-48 Score=368.38 Aligned_cols=218 Identities=13% Similarity=0.107 Sum_probs=182.4
Q ss_pred CCcceeeCCC--CCcHHHHHHHHHHHhhcCeEEEecCCCCHHHHhhhhhccccchhhHHHHHhhhHHHHHHHHHHhhccC
Q 040217 59 VSIPFINKLK--WESPEVAKSICDAAESWGFFQIVNHGVPLTLAATWRIFNGFWLSFYLFMILGHLGACLRRKKAFHDIF 136 (326)
Q Consensus 59 ~~IPvIDls~--~~~~~~~~~l~~A~~~~GFF~lvnHGI~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~FF~L~ 136 (326)
.+||||||+. .... .++|.+||++||||||+|||||.+++++ +++.+++||+|
T Consensus 3 ~~iPvIDls~l~~~~~--~~~l~~A~~~~GFf~l~nHGi~~~l~~~----------------------~~~~~~~fF~l- 57 (311)
T 1dcs_A 3 TTVPTFSLAELQQGLH--QDEFRRCLRDKGLFYLTDCGLTDTELKS----------------------AKDLVIDFFEH- 57 (311)
T ss_dssp CCCCEEEHHHHHTTCS--HHHHHHHHHHTCEEEEESSSCCHHHHHH----------------------HHHHHHHHHHH-
T ss_pred CCCcEEEchhhcCCCH--HHHHHHHHHhCcEEEEECCCCCHHHHHH----------------------HHHHHHHHHcC-
Confidence 4699999985 2222 2399999999999999999999999999 99999999999
Q ss_pred CCChhhhhhcccCCCCCCccccccCccc------cccCCCCceecccccccchhhhccCCCc-hhHHHHHHHHHHHHHHH
Q 040217 137 YPFGYEKRKYSKENSPTNNVRFGSSFVR------HVERALDWKDSLSLFYVSEEETAAFWPP-VCKDEMLEYRKSSEVLI 209 (326)
Q Consensus 137 ~P~~eeK~~~~~~~~p~~~~Gy~~~~~~------~~~~~~dw~E~~~~~~~p~~~~~~~wP~-~fr~~~~~y~~~~~~la 209 (326)
|..|+|+++.... ....+||...... ...+..||+|+|++... ++.||. .||+.+++|+++|.+|+
T Consensus 58 -P~~e~K~~~~~~~-~~~~~Gy~~~~~e~~~~~~~~~~~~d~~E~~~~~~~-----~n~wP~~~fr~~~~~y~~~~~~l~ 130 (311)
T 1dcs_A 58 -GSEAEKRAVTSPV-PTMRRGFTGLESESTAQITNTGSYSDYSMCYSMGTA-----DNLFPSGDFERIWTQYFDRQYTAS 130 (311)
T ss_dssp -CCHHHHHHTBCSS-CCSSSEEEEC-----------------CEEEEECSS-----SCCCSCHHHHHHHHHHHHHHHHHH
T ss_pred -CcHHHhHHhhccC-CCCCCceeeccccccccccCCCCCCCcceeeeccCC-----CCCCCChHHHHHHHHHHHHHHHHH
Confidence 7457899998754 2467899876532 23567899999998754 467986 99999999999999999
Q ss_pred HHHHHHHHhhcCC----CCC--------------------------------------------C-cccc---cc-----
Q 040217 210 KRLMHVLVKGLNV----KRI--------------------------------------------D-EIRA---LM----- 232 (326)
Q Consensus 210 ~~lL~~la~~Lgl----~~~--------------------------------------------d-~v~G---LQ----- 232 (326)
.+||++|+++||+ +++ | +++| ||
T Consensus 131 ~~ll~~la~~Lgl~~~~~~~~f~~~~~~lrl~~YPp~~~~~~~~~~~~g~~~HtD~g~lTlL~qd~~v~G~~~LqV~~~g 210 (311)
T 1dcs_A 131 RAVAREVLRATGTEPDGGVEAFLDCEPLLRFRYFPQVPEHRSAEEQPLRMAPHYDLSMVTLIQQTPCANGFVSLQAEVGG 210 (311)
T ss_dssp HHHHHHHHHHTTCCCTTCHHHHHSCCCEEEEEEECC-----------CCEEEEEECSSEEEEEEECCTTCCCCEEEEETT
T ss_pred HHHHHHHHHHcCCCCcCcHhHHhhcchhhheecCCCCCcccccCccccccccccCCCeEEEEecCCCCCCceeEEEEeCC
Confidence 9999999999999 421 4 6899 99
Q ss_pred ---------------hhhhHHHhhCCccccccceeecCC-----CCCeeEEEeeecCCCCceeecCcccccCCCCCCC--
Q 040217 233 ---------------LLDALQIIRNGRYKSFEHYVIGNG-----SQNRISVPLFVNLKPEAILCPFPKVLANGEKPLY-- 290 (326)
Q Consensus 233 ---------------vGD~Le~~SNG~~kS~~HRVv~~~-----~~~R~Sia~F~~P~~d~~I~Plp~~v~~~~p~~y-- 290 (326)
+||+||+||||+|||+.|||++++ .++||||+||++|+.|++|. +|+++++++|++|
T Consensus 211 ~W~~V~p~pg~lvVNiGD~l~~~TnG~~kS~~HRVv~~~~~~~~~~~R~Si~~F~~p~~d~~i~-l~~~~~~~~p~~y~~ 289 (311)
T 1dcs_A 211 AFTDLPYRPDAVLVFCGAIATLVTGGQVKAPRHHVAAPRRDQIAGSSRTSSVFFLRPNADFTFS-VPLARECGFDVSLDG 289 (311)
T ss_dssp EEEECCCCTTCEEEEECHHHHHHTTSCSCCCCEEECCC----CTTCCEEEEEEEECCCTTCEEE-HHHHHHTTCCCCCCS
T ss_pred EEEeCcCCCCeEEEEHHHHHHHHhCCcccCCCceEeCCCcccCCCCCeEEEEEEEcCCCCcEEe-CCcccCCCCccccCC
Confidence 999999999999999999999987 78999999999999999999 9999999999999
Q ss_pred CCccHHHHHHHHHHhccCC
Q 040217 291 KPVLCADYSRHFYTKAHVG 309 (326)
Q Consensus 291 ~~vt~~dyl~~~~~~~~~g 309 (326)
+++|++||+..++++.+..
T Consensus 290 ~~~t~~ey~~~~~~~~~~~ 308 (311)
T 1dcs_A 290 ETATFQDWIGGNYVNIRRT 308 (311)
T ss_dssp SEEEHHHHHCSSCCCEECC
T ss_pred CCccHHHHHHHHHHHHhcc
Confidence 9999999999988877653
No 5
>1odm_A Isopenicillin N synthase; antibiotic biosynthesis, B-lactam antibiotic, oxygenase, penicillin biosynthesis, oxidoreductase, iron; HET: ASV; 1.15A {Emericella nidulans} SCOP: b.82.2.1 PDB: 1blz_A* 1hb1_A* 1hb2_A* 1hb3_A* 1hb4_A* 1ips_A 1obn_A* 1oc1_A* 1bk0_A* 1odn_A* 1qiq_A* 1qje_A* 1qjf_A* 1uzw_A* 1w03_A* 1w04_A* 1w05_A* 1w06_A* 1w3v_A* 1w3x_A* ...
Probab=100.00 E-value=3.9e-46 Score=358.57 Aligned_cols=212 Identities=22% Similarity=0.228 Sum_probs=181.8
Q ss_pred CCcceeeCCC--C----CcHHHHHHHHHHHhhcCeEEEecCCCCHHHHhhhhhccccchhhHHHHHhhhHHHHHHHHHHh
Q 040217 59 VSIPFINKLK--W----ESPEVAKSICDAAESWGFFQIVNHGVPLTLAATWRIFNGFWLSFYLFMILGHLGACLRRKKAF 132 (326)
Q Consensus 59 ~~IPvIDls~--~----~~~~~~~~l~~A~~~~GFF~lvnHGI~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~F 132 (326)
.+||||||+. . ++.+++++|.+||++||||||+|||| ++++ +++.+++|
T Consensus 7 ~~iPvIDls~l~~~~~~~~~~~~~~l~~A~~~~GFf~v~nHGi---l~~~----------------------~~~~~~~F 61 (331)
T 1odm_A 7 ANVPKIDVSPLFGDDQAAKMRVAQQIDAASRDTGFFYAVNHGI---NVQR----------------------LSQKTKEF 61 (331)
T ss_dssp CCCCEEECGGGGSSCHHHHHHHHHHHHHHHHTTSEEEEESCCC---CHHH----------------------HHHHHHHH
T ss_pred CCCCEEEchHhcCCChHHHHHHHHHHHHHHHhCCEEEEEccce---eHHH----------------------HHHHHHhc
Confidence 4799999986 1 34668999999999999999999999 8999 99999999
Q ss_pred -hccCCCChhhhhhcccCCCCCCccccccCccc--cc------cCCCCceecccccccch-----------hhhccCCCc
Q 040217 133 -HDIFYPFGYEKRKYSKENSPTNNVRFGSSFVR--HV------ERALDWKDSLSLFYVSE-----------EETAAFWPP 192 (326)
Q Consensus 133 -F~L~~P~~eeK~~~~~~~~p~~~~Gy~~~~~~--~~------~~~~dw~E~~~~~~~p~-----------~~~~~~wP~ 192 (326)
|+| | .|+|+++.+ +||...... .. .+..||+|+|++...+. ...++.||+
T Consensus 62 ~F~l--P-~eeK~~~~~-------~Gy~~~~~e~~~~~~~~~~~~~~d~kE~~~~~~~~~~~~p~~~~~~~~~~~n~wP~ 131 (331)
T 1odm_A 62 HMSI--T-PEEKWDLAI-------RAYNKEHQDQVRAGYYLSIPGKKAVESFCYLNPNFTPDHPRIQAKTPTHEVNVWPD 131 (331)
T ss_dssp HHHC--C-HHHHHHHBC-------TTTCTTCTTCSSSEEECCBTTTBCCEEEEECCTTCCTTSHHHHTTCTTCCCCCCCC
T ss_pred cCCC--C-HHHHHhhhh-------cCCCcCCccccccccccccCCCCChhheEecccCCccccccccccccccCCCCCCC
Confidence 999 9 999999965 466543211 11 25789999999875321 123688996
Q ss_pred -----hhHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCC------------------------------------------
Q 040217 193 -----VCKDEMLEYRKSSEVLIKRLMHVLVKGLNVKRI------------------------------------------ 225 (326)
Q Consensus 193 -----~fr~~~~~y~~~~~~la~~lL~~la~~Lgl~~~------------------------------------------ 225 (326)
+||+++++|+++|.+|+.+||++|+++||++++
T Consensus 132 ~~~~p~fr~~~~~y~~~~~~l~~~ll~~la~~Lgl~~~~f~~~~~~~~~~lr~~l~~YP~~~~~~p~~~~~~~~~~~~g~ 211 (331)
T 1odm_A 132 ETKHPGFQDFAEQYYWDVFGLSSALLKGYALALGKEENFFARHFKPDDTLASVVLIRYPYLDPYPEAAIKTAADGTKLSF 211 (331)
T ss_dssp TTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTTTGGGCCTTTCCCEEEEEEECCCSSCCGGGCEECTTSCEEEE
T ss_pred CCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHhcCcHHHHHHHHhhCCCcccccccccCCCcccccccc
Confidence 799999999999999999999999999997521
Q ss_pred --------------Ccccccc--------------------hhhhHHHhhCCccccccceeecCCCCCeeEEEeeecCCC
Q 040217 226 --------------DEIRALM--------------------LLDALQIIRNGRYKSFEHYVIGNGSQNRISVPLFVNLKP 271 (326)
Q Consensus 226 --------------d~v~GLQ--------------------vGD~Le~~SNG~~kS~~HRVv~~~~~~R~Sia~F~~P~~ 271 (326)
|+++||| +||+||+||||+|||++|||+. ++++|||||||++|+.
T Consensus 212 ~~HtD~g~lTlL~qd~v~GLQV~~~~gWi~V~p~pgalvVNiGD~l~~~TnG~~kS~~HRVv~-~~~~R~Sia~F~~P~~ 290 (331)
T 1odm_A 212 EWHEDVSLITVLYQSNVQNLQVETAAGYQDIEADDTGYLINCGSYMAHLTNNYYKAPIHRVKW-VNAERQSLPFFVNLGY 290 (331)
T ss_dssp EEECCSSSEEEEEECSSCCEEEEETTEEEECCCCTTSEEEEECHHHHHHTTTSSCCCCEEEEC-CCSCEEEEEEEECCCT
T ss_pred ccccCCCeEEEEeeCCCCCEEEEcCCCeEECCCCCCeEEEEccHHHHHHhCCEeeCCCceeCC-CCCCEEEEEEEEcCCC
Confidence 4578888 9999999999999999999985 5789999999999999
Q ss_pred CceeecCcccccCCCCCCCCCccHHHHHHHHHHhcc
Q 040217 272 EAILCPFPKVLANGEKPLYKPVLCADYSRHFYTKAH 307 (326)
Q Consensus 272 d~~I~Plp~~v~~~~p~~y~~vt~~dyl~~~~~~~~ 307 (326)
|++|.|+++++++++ ++|+++|++||+..+++..+
T Consensus 291 d~~i~pl~~~~~~~~-~~y~~~t~~e~l~~~~~~~~ 325 (331)
T 1odm_A 291 DSVIDPFDPREPNGK-SDREPLSYGDYLQNGLVSLI 325 (331)
T ss_dssp TCBCCCCCTTSTTCC-CSSCCCBHHHHHHHHHHHHH
T ss_pred CCEEeCCCccccccc-cCCCCccHHHHHHHHHHHHH
Confidence 999999999998887 99999999999999988653
No 6
>3on7_A Oxidoreductase, iron/ascorbate family; structural genomics, joint center for structural genomics, J protein structure initiative; 2.20A {Shewanella oneidensis}
Probab=100.00 E-value=1.1e-43 Score=334.49 Aligned_cols=196 Identities=19% Similarity=0.237 Sum_probs=164.6
Q ss_pred CCcceeeCCCCCcHHHHHHHHHHHhhcCeEEEecCCCCHHHHhhhhhccccchhhHHHHHhhhHHHHHHHHHHhhccCCC
Q 040217 59 VSIPFINKLKWESPEVAKSICDAAESWGFFQIVNHGVPLTLAATWRIFNGFWLSFYLFMILGHLGACLRRKKAFHDIFYP 138 (326)
Q Consensus 59 ~~IPvIDls~~~~~~~~~~l~~A~~~~GFF~lvnHGI~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~FF~L~~P 138 (326)
.+||||||+. .+++++|.+||++||||||+|||||.+++++ +++.+++||+|
T Consensus 2 ~~IPvIDls~---~~~~~~l~~A~~~~GFF~v~nHGi~~~li~~----------------------~~~~~~~FF~l--- 53 (280)
T 3on7_A 2 MKLETIDYRA---ADSAKRFVESLRETGFGVLSNHPIDKELVER----------------------IYTEWQAFFNS--- 53 (280)
T ss_dssp --CCEEETTS---TTHHHHHHHHHHHHSEEEEESCSSCHHHHHH----------------------HHHHHHHHHTS---
T ss_pred CCCCEEECCC---hhHHHHHHHHHHhCCEEEEECCCCCHHHHHH----------------------HHHHHHHHhhh---
Confidence 3699999986 3468999999999999999999999999999 99999999988
Q ss_pred ChhhhhhcccCCCCCCccccccCc-cc--cccCCCCceecccccccchhhhccCCCchhHHHHHHHHHHHHHHHHHHHHH
Q 040217 139 FGYEKRKYSKENSPTNNVRFGSSF-VR--HVERALDWKDSLSLFYVSEEETAAFWPPVCKDEMLEYRKSSEVLIKRLMHV 215 (326)
Q Consensus 139 ~~eeK~~~~~~~~p~~~~Gy~~~~-~~--~~~~~~dw~E~~~~~~~p~~~~~~~wP~~fr~~~~~y~~~~~~la~~lL~~ 215 (326)
|+|++|... +...+||.... .. ......||+|+|.+. |. ..||+.||+.+++|+++|.+|+.+||++
T Consensus 54 --e~K~k~~~~--~~~~~GY~~~~~~e~~~~~~~~D~kE~~~~~--p~----~~~p~~fr~~~~~y~~~~~~l~~~ll~~ 123 (280)
T 3on7_A 54 --EAKNEFMFN--RETHDGFFPASISETAKGHTVKDIKEYYHVY--PW----GRIPDSLRANILAYYEKANTLASELLEW 123 (280)
T ss_dssp --GGGGGGBCC--TTTCCEEECCC--------CCCCSCEEEEEC--TT----SCCCGGGHHHHHHHHHHHHHHHHHHHHH
T ss_pred --HHHHHhccC--CCCCCccccCccccccCCCCcccHHHHHhcC--CC----CCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 578888764 35679998653 11 123468999999874 21 2356699999999999999999999999
Q ss_pred HHhhcCCCC-----------------C-----------------------------------Ccccccc-----------
Q 040217 216 LVKGLNVKR-----------------I-----------------------------------DEIRALM----------- 232 (326)
Q Consensus 216 la~~Lgl~~-----------------~-----------------------------------d~v~GLQ----------- 232 (326)
||++||++. . |+++|||
T Consensus 124 la~~Lgl~~~~~~~~~~~~~~~~~~~~~lr~~~YP~~~~~~~~~~~g~~~HtD~g~lTlL~qd~~~GLqV~~~~g~W~~V 203 (280)
T 3on7_A 124 IETYSPDEIKAKFSIPLPEMIANSHKTLLRILHYPPMTGDEEMGAIRAAAHEDINLITVLPTANEPGLQVKAKDGSWLDV 203 (280)
T ss_dssp HHHTSCHHHHTTCSSCHHHHHTTCSSCEEEEEEECCCCTTCCCCSEEEEEECCCSSEEEEECCSCCCEEEECTTSCEEEC
T ss_pred HHHHcCCcchhhhhHHHHHHhcCCccceEEEEECCCCCCccccCcccccCCCCCCeEEEEEecCCCCeEEEcCCCCEEEC
Confidence 999998541 0 6789999
Q ss_pred ----------hhhhHHHhhCCccccccceeecCC----CCCeeEEEeeecCCCCceeecCcccccCCCCCCCCCccHHHH
Q 040217 233 ----------LLDALQIIRNGRYKSFEHYVIGNG----SQNRISVPLFVNLKPEAILCPFPKVLANGEKPLYKPVLCADY 298 (326)
Q Consensus 233 ----------vGD~Le~~SNG~~kS~~HRVv~~~----~~~R~Sia~F~~P~~d~~I~Plp~~v~~~~p~~y~~vt~~dy 298 (326)
+||+||+||||+|||+.|||+.++ .++|||||||++|+.|++|+| ++|++||
T Consensus 204 ~p~pg~~vVNiGD~l~~~Tng~~kS~~HRVv~~~~~~~~~~R~Si~~F~~P~~d~~i~p--------------~ita~~~ 269 (280)
T 3on7_A 204 PSDFGNIIINIGDMLQEASDGYFPSTSHRVINPEGTDKTKSRISLPLFLHPHPSVVLSE--------------RYTADSY 269 (280)
T ss_dssp CCCTTCEEEEECHHHHHHTTTSSCCCCEEEECCTTCCTTSCEEECCEEECCCTTCBCSS--------------SCBHHHH
T ss_pred cCCCCEEEEEcChHHHHHhCCcccCCCceEeCCCCCCCCCCeEEEEEEEcCCCCCEECC--------------CccHHHH
Confidence 999999999999999999998874 458999999999999999985 5899999
Q ss_pred HHHHHHhc
Q 040217 299 SRHFYTKA 306 (326)
Q Consensus 299 l~~~~~~~ 306 (326)
+..+++..
T Consensus 270 l~~rl~~~ 277 (280)
T 3on7_A 270 LMERLREL 277 (280)
T ss_dssp HHHHHHHT
T ss_pred HHHHHHHh
Confidence 99998763
No 7
>2opi_A L-fuculose-1-phosphate aldolase; L-fuculose-1-phosphate aldolas structural genomics, PSI-2, protein structure initiative; 2.50A {Bacteroides thetaiotaomicron}
Probab=48.31 E-value=11 Score=32.83 Aligned_cols=36 Identities=33% Similarity=0.459 Sum_probs=31.1
Q ss_pred CcceeeCCCCCcHHHHHHHHHHHhhcCeEEEecCCC
Q 040217 60 SIPFINKLKWESPEVAKSICDAAESWGFFQIVNHGV 95 (326)
Q Consensus 60 ~IPvIDls~~~~~~~~~~l~~A~~~~GFF~lvnHGI 95 (326)
.||+++....+..++++.+.+++.+.-.+.+-|||+
T Consensus 125 ~v~~~~y~~~g~~~la~~i~~~l~~~~avll~nHG~ 160 (212)
T 2opi_A 125 EIPVIPYYRPGSPELAKAVVEAMLKHNSVLLTNHGQ 160 (212)
T ss_dssp CCCEECCCCTTCHHHHHHHHHHTSSCSEEEETTTEE
T ss_pred CeEEEcCCCCCcHHHHHHHHHHhccCCEEEEcCCCc
Confidence 799999876567789999999998888888999995
No 8
>2fk5_A Fuculose-1-phosphate aldolase; class II aldolase, metal binding, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 1.90A {Thermus thermophilus} PDB: 2flf_A
Probab=42.87 E-value=17 Score=31.49 Aligned_cols=36 Identities=22% Similarity=0.302 Sum_probs=30.8
Q ss_pred Cccee-eCCCCCcHHHHHHHHHHHhhcCeEEEecCCC
Q 040217 60 SIPFI-NKLKWESPEVAKSICDAAESWGFFQIVNHGV 95 (326)
Q Consensus 60 ~IPvI-Dls~~~~~~~~~~l~~A~~~~GFF~lvnHGI 95 (326)
.||++ +......+++++.+.+++.+.-.+.+-|||+
T Consensus 117 ~ip~~~~y~~~g~~ela~~i~~~l~~~~avll~nHG~ 153 (200)
T 2fk5_A 117 EVPVLAPKTVSATEEAALSVAEALREHRACLLRGHGA 153 (200)
T ss_dssp CEEEECCSCCSSSHHHHHHHHHHHHHCSEEEETTTEE
T ss_pred CceEecCCCCCCcHHHHHHHHHHhCcCCEEEECCCCc
Confidence 79999 7766567789999999998888888999995
No 9
>1e4c_P L-fuculose 1-phosphate aldolase; aldolase (class II), bacterial L-fucose metabolism; 1.66A {Escherichia coli} SCOP: c.74.1.1 PDB: 1fua_A 2fua_A 3fua_A 4fua_A* 1dzv_P 1e4b_P 1e47_P* 1e48_P* 1dzz_P 1e46_P 1dzu_P 1dzy_P 1dzx_P 1dzw_P 1e49_P 1e4a_P
Probab=41.66 E-value=16 Score=31.82 Aligned_cols=37 Identities=19% Similarity=0.252 Sum_probs=31.1
Q ss_pred CCcceeeCCCCCcHHHHHHHHHHHhhcCeEEEecCCC
Q 040217 59 VSIPFINKLKWESPEVAKSICDAAESWGFFQIVNHGV 95 (326)
Q Consensus 59 ~~IPvIDls~~~~~~~~~~l~~A~~~~GFF~lvnHGI 95 (326)
..||+++....+..++++.+.+++.+.-.+.+-|||+
T Consensus 121 ~~ip~~~y~~~g~~~la~~i~~~l~~~~avll~nHG~ 157 (215)
T 1e4c_P 121 NSIPCAPYATFGTRELSEHVALALKNRKATLLQHHGL 157 (215)
T ss_dssp SCBCEECCCCTTCHHHHHHHHHHTSSCSEEEETTTEE
T ss_pred CCcceeeCCCCCcHHHHHHHHHHhccCCEEEEcCCCc
Confidence 3699999876567789999999998888888999995
No 10
>1pvt_A Sugar-phosphate aldolase; structural genomics, PSI, protein initiative, midwest center for structural genomics, MCSG; 2.50A {Thermotoga maritima} SCOP: c.74.1.1
Probab=41.01 E-value=18 Score=31.99 Aligned_cols=37 Identities=22% Similarity=0.135 Sum_probs=31.6
Q ss_pred CCcceeeCCCCCcHHHHHHHHHHHhhcCeEEEecCCC
Q 040217 59 VSIPFINKLKWESPEVAKSICDAAESWGFFQIVNHGV 95 (326)
Q Consensus 59 ~~IPvIDls~~~~~~~~~~l~~A~~~~GFF~lvnHGI 95 (326)
..||+++.......++++.+.+++++.-.+.+-|||+
T Consensus 160 ~~v~~~~y~~~g~~ela~~i~~~l~~~~avll~nHG~ 196 (238)
T 1pvt_A 160 QGISVVEFEKPGSVELGLKTVEKSEGKDAVLWDKHGV 196 (238)
T ss_dssp SCCEEECCCSTTCHHHHHHHHHHTSSCSEEEETTSCE
T ss_pred CCceEecCCCCCcHHHHHHHHHHhccCCEEEEcCCCc
Confidence 3699999876567889999999998888888999996
No 11
>2v9l_A Rhamnulose-1-phosphate aldolase; entropy index, metal-binding, oligomerization, zinc, lyase, class II, cytoplasm; HET: PGO; 1.23A {Escherichia coli} PDB: 2uyv_A* 1ojr_A 2v9g_A* 1gt7_A* 2v9n_A* 2uyu_A* 2v9m_A* 2v9o_A 2v9e_A 2v9f_A 2v9i_A 2v29_A 2v2a_A* 2v2b_A
Probab=36.84 E-value=19 Score=32.65 Aligned_cols=36 Identities=8% Similarity=0.140 Sum_probs=31.3
Q ss_pred CcceeeCCCCCcHHHHHHHHHHHhhcCeEEEecCCC
Q 040217 60 SIPFINKLKWESPEVAKSICDAAESWGFFQIVNHGV 95 (326)
Q Consensus 60 ~IPvIDls~~~~~~~~~~l~~A~~~~GFF~lvnHGI 95 (326)
.||+++....+..++++.+.+++++.-.+.+-|||+
T Consensus 179 ~v~v~~y~~~g~~ela~~i~~~l~~~~avll~nHG~ 214 (274)
T 2v9l_A 179 GVGILPWMVPGTDAIGQATAQEMQKHSLVLWPFHGV 214 (274)
T ss_dssp CEEECCCCCSSSHHHHHHHHHHHTTCSEEEETTTEE
T ss_pred ceeEecCCCCCCHHHHHHHHHHHccCCEEEEcCCCc
Confidence 699998866567899999999999888888999995
No 12
>4ay7_A Methylcobalamin\: coenzyme M methyltransferase; TIM barrel; 1.80A {Methanosarcina mazei} PDB: 4ay8_A
Probab=36.07 E-value=44 Score=30.93 Aligned_cols=47 Identities=11% Similarity=0.029 Sum_probs=32.9
Q ss_pred CcHHHHHHHHHHHhhcCeEEEecCCCCHHHHhhhhhccccchhhHHHHHhhhHHHHHHHHHHhhc
Q 040217 70 ESPEVAKSICDAAESWGFFQIVNHGVPLTLAATWRIFNGFWLSFYLFMILGHLGACLRRKKAFHD 134 (326)
Q Consensus 70 ~~~~~~~~l~~A~~~~GFF~lvnHGI~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~FF~ 134 (326)
..+++.+++.+.++.-||..-.+|||+.+.=-+ .+.++++++++|++
T Consensus 302 ~~e~i~~~v~~~l~~~g~I~~~Ghgi~p~tp~e------------------nv~a~v~av~ey~A 348 (348)
T 4ay7_A 302 PVDKIKAEAKEALEGGIDVLAPGCGIAPMTPLE------------------NVKALVAARDEFYA 348 (348)
T ss_dssp CHHHHHHHHHHHHHTTCSEEEESSSCCTTCCHH------------------HHHHHHHHHHHHTC
T ss_pred CHHHHHHHHHHHHhCCCCEEeCCCccCCCCCHH------------------HHHHHHHHHHHhcC
Confidence 446677778888888888776789987532111 24449999999974
No 13
>2irp_A Putative aldolase class 2 protein AQ_1979; aldehyde, enzymatic mechanism; 2.40A {Aquifex aeolicus}
Probab=30.12 E-value=29 Score=29.90 Aligned_cols=36 Identities=25% Similarity=0.336 Sum_probs=29.0
Q ss_pred CCcceeeCCCCCcHHHHHHHHHHHhhcC---eEEEecCCC
Q 040217 59 VSIPFINKLKWESPEVAKSICDAAESWG---FFQIVNHGV 95 (326)
Q Consensus 59 ~~IPvIDls~~~~~~~~~~l~~A~~~~G---FF~lvnHGI 95 (326)
..||+++.. .+.+++++.+.+++.+.+ .+.+-|||+
T Consensus 138 ~~vp~~~~~-~g~~~La~~i~~~l~~~~~~~avll~nHG~ 176 (208)
T 2irp_A 138 IKIPIFPNE-QNIPLLAKEVENYFKTSEDKYGFLIRGHGL 176 (208)
T ss_dssp CEEEEECCC-SCHHHHHHHHHHHHHHCSCCSCEEETTTEE
T ss_pred cceeeecCC-CCHHHHHHHHHHHHhcCCCceEEEEcCCCC
Confidence 368998875 467789999999998765 678899995
No 14
>2rg4_A Uncharacterized protein; rhodobacterales, oceanicola granulosus HTCC2516, Q2CBJ1_9RHO structural genomics, PSI-2; 1.90A {Oceanicola granulosus} PDB: 3bvc_A
Probab=26.81 E-value=34 Score=29.88 Aligned_cols=33 Identities=30% Similarity=0.308 Sum_probs=23.0
Q ss_pred hhhhHHHhhCCcccc-ccceeecCCC-CCeeEEEeeecCCC
Q 040217 233 LLDALQIIRNGRYKS-FEHYVIGNGS-QNRISVPLFVNLKP 271 (326)
Q Consensus 233 vGD~Le~~SNG~~kS-~~HRVv~~~~-~~R~Sia~F~~P~~ 271 (326)
.||++= |.| ..|.|..+.. ++|+||+|-+.|..
T Consensus 175 ~G~lvl------FpS~l~H~V~p~~~~~~RiSIsFN~~~~~ 209 (216)
T 2rg4_A 175 VGDVLL------WESWLRHEVPMNMAEEDRISVSFNYAWGE 209 (216)
T ss_dssp TTEEEE------EETTSCEEECCCCSSSCEEEEEEEEEC--
T ss_pred CCeEEE------ECCCCEEeccCCCCCCCEEEEEEEeecCC
Confidence 677753 222 4699998754 68999999988764
No 15
>1m5a_B Insulin B chain; alpha helices, beta sheets, 3(10) helices, disulphide bridge hormone-growth factor complex; 1.20A {Sus scrofa} SCOP: g.1.1.1 PDB: 1aph_B 1b18_B 1b19_B 1b2a_B 1b2b_B 1b2c_B 1b2d_B 1b2e_B 1b2f_B 1b2g_B 1bph_B 1cph_B 1dph_B 1b17_B 1mpj_B 1wav_B 1zni_B 2a3g_B 2bn1_B 2bn3_B ...
Probab=26.19 E-value=61 Score=19.86 Aligned_cols=18 Identities=17% Similarity=0.383 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHhhcCeEE
Q 040217 72 PEVAKSICDAAESWGFFQ 89 (326)
Q Consensus 72 ~~~~~~l~~A~~~~GFF~ 89 (326)
.++++.|.-.|.+-|||+
T Consensus 9 s~LVdaL~~vCgdRGF~~ 26 (30)
T 1m5a_B 9 SHLVEALYLVCGERGFFY 26 (30)
T ss_dssp HHHHHHHHHHHGGGCEEE
T ss_pred HHHHHHHHHHhccCcccc
Confidence 578889999999999998
No 16
>2vf9_A Coat protein; virion, RNA-binding, capsid protein, structural protein, virus; 3.50A {Bacteriophage PRR1}
Probab=24.79 E-value=20 Score=27.96 Aligned_cols=18 Identities=44% Similarity=0.582 Sum_probs=14.9
Q ss_pred HHHhhCCccccccceeec
Q 040217 237 LQIIRNGRYKSFEHYVIG 254 (326)
Q Consensus 237 Le~~SNG~~kS~~HRVv~ 254 (326)
|.--|||+|||++.-|+.
T Consensus 49 lrktsngrykstlklvvp 66 (131)
T 2vf9_A 49 LRKTSNGRYKSTLKLVVP 66 (131)
T ss_dssp EEECTTSEEEEEEEEEEE
T ss_pred EEecCCCceeeeEEEEEE
Confidence 456799999999988774
No 17
>2dbn_A Hypothetical protein YBIU; alpha/beta structure, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.70A {Escherichia coli} PDB: 2dbi_A 2csg_A*
Probab=23.71 E-value=24 Score=34.91 Aligned_cols=46 Identities=17% Similarity=0.194 Sum_probs=32.7
Q ss_pred CCCCCcceeeCCCCCcHHHHHHHHHHHhhcCeEEEecCCCCHHHHhh
Q 040217 56 LGQVSIPFINKLKWESPEVAKSICDAAESWGFFQIVNHGVPLTLAAT 102 (326)
Q Consensus 56 ~~~~~IPvIDls~~~~~~~~~~l~~A~~~~GFF~lvnHGI~~~l~~~ 102 (326)
.++.-||.||++.-....+.++..+..++.|++.|.|+ ||.+....
T Consensus 96 ~G~~~iP~i~f~di~~~~~s~~~~~~ir~rG~vVIRgv-vp~e~A~~ 141 (461)
T 2dbn_A 96 QGDAVWPVLSYADIKAGHVTAEQREQIKRRGCAVIKGH-FPREQALG 141 (461)
T ss_dssp TTCCSSCEEEHHHHHHTCCCHHHHHHHHHHSEEEEETS-SCHHHHHH
T ss_pred cCCCCcceecHHHhcCCCCCHHHHHHHHhccEEEECCC-CCHHHHHH
Confidence 46678999999751111133556678889999977765 89988888
No 18
>3ocr_A Class II aldolase/adducin domain protein; PSI-2, midwest center for structural genomics, protein struc initiative, MCSG, lyase; 1.95A {Pseudomonas syringae PV}
Probab=23.14 E-value=50 Score=29.99 Aligned_cols=36 Identities=8% Similarity=0.113 Sum_probs=30.2
Q ss_pred CcceeeCCCCC-cHHHHHHHHHHHhhcCeEEEecCCC
Q 040217 60 SIPFINKLKWE-SPEVAKSICDAAESWGFFQIVNHGV 95 (326)
Q Consensus 60 ~IPvIDls~~~-~~~~~~~l~~A~~~~GFF~lvnHGI 95 (326)
.||++|..... ..++++.|.+++.+.-.+.+-|||+
T Consensus 156 ~v~~~~y~~~~~~~el~~~i~~~l~~~~avlL~nHG~ 192 (273)
T 3ocr_A 156 RVAYHGYEGIALDLSERERLVADLGDKSVMILRNHGL 192 (273)
T ss_dssp TEEEECCCCSSCCHHHHHHHHHHHTTCSEEEETTTEE
T ss_pred CEEEECCCCCCCCHHHHHHHHHHhCcCCEEEEcCCce
Confidence 68888886533 6788999999999988999999995
Done!