BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 040218
(334 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2VCE|A Chain A, Characterization And Engineering Of The Bifunctional N-
And O-glucosyltransferase Involved In Xenobiotic
Metabolism In Plants
pdb|2VCH|A Chain A, Characterization And Engineering Of The Bifunctional N-
And O-Glucosyltransferase Involved In Xenobiotic
Metabolism In Plants
pdb|2VG8|A Chain A, Characterization And Engineering Of The Bifunctional N-
And O-Glucosyltransferase Involved In Xenobiotic
Metabolism In Plants
Length = 480
Score = 117 bits (292), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 79/258 (30%), Positives = 121/258 (46%), Gaps = 46/258 (17%)
Query: 105 ADGILVNTIEELDKIGLEAKLEPA----------------KEHGISAEL--CKNWLDTKS 146
A+GILVNT EL+ ++A EP K+ E C WLD +
Sbjct: 207 AEGILVNTFFELEPNAIKALQEPGLDKPPVYPVGPLVNIGKQEAKQTEESECLKWLDNQP 266
Query: 147 CISVLYVSFGSQNKIAVSQKMQLAMALDASGKNFIWIVRPPIG------FDINSEFKANE 200
SVLYVSFGS + Q +LA+ L S + F+W++R P G FD +S+
Sbjct: 267 LGSVLYVSFGSGGTLTCEQLNELALGLADSEQRFLWVIRSPSGIANSSYFDSHSQTDPLT 326
Query: 201 WLPRGFEERVKGQGLVVHKWAPQVEILSHKSISAFLSHCGWN-----LICARSFVSW--- 252
+LP GF ER K +G V+ WAPQ ++L+H S FL+HCGWN ++ ++W
Sbjct: 327 FLPPGFLERTKKRGFVIPFWAPQAQVLAHPSTGGFLTHCGWNSTLESVVSGIPLIAWPLY 386
Query: 253 ----------GADNWVAIGSRADELCRLKEHIVVKMELVMNKTEKGEAVRMNALKVKEIT 302
D A+ RA + ++ V ++ + + E+G+ VR ++KE
Sbjct: 387 AEQKMNAVLLSEDIRAALRPRAGDDGLVRREEVARVVKGLMEGEEGKGVRNKMKELKEAA 446
Query: 303 DNAFTNEENCKGSSVKAM 320
++ G+S KA+
Sbjct: 447 CRVLKDD----GTSTKAL 460
>pdb|2C1X|A Chain A, Structure And Activity Of A Flavonoid 3-O
Glucosyltransferase Reveals The Basis For Plant Natural
Product Modification
pdb|2C1Z|A Chain A, Structure And Activity Of A Flavonoid 3-O
Glucosyltransferase Reveals The Basis For Plant Natural
Product Modification
pdb|2C9Z|A Chain A, Structure And Activity Of A Flavonoid 3-0
Glucosyltransferase Reveals The Basis For Plant Natural
Product Modification
Length = 456
Score = 96.3 bits (238), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 76/254 (29%), Positives = 122/254 (48%), Gaps = 49/254 (19%)
Query: 95 LQKVLPERTNADGILVNTIEELDKI---GLEAKLEPAKEHGI-----------SAELCKN 140
+ +VLP+ T + +N+ EELD L++KL+ G + C
Sbjct: 207 MGQVLPKAT---AVFINSFEELDDSLTNDLKSKLKTYLNIGPFNLITPPPVVPNTTGCLQ 263
Query: 141 WLDTKSCISVLYVSFGSQNKIAVSQKMQLAMALDASGKNFIWIVRPPIGFDINSEFKANE 200
WL + SV+Y+SFG+ ++ + L+ AL+AS FIW +R KA
Sbjct: 264 WLKERKPTSVVYISFGTVTTPPPAEVVALSEALEASRVPFIWSLRD----------KARV 313
Query: 201 WLPRGFEERVKGQGLVVHKWAPQVEILSHKSISAFLSHCGWN-----------LICARSF 249
LP GF E+ +G G+VV WAPQ E+L+H+++ AF++HCGWN LIC F
Sbjct: 314 HLPEGFLEKTRGYGMVV-PWAPQAEVLAHEAVGAFVTHCGWNSLWESVAGGVPLICRPFF 372
Query: 250 VSWG-----ADNWVAIGSRADELCRLKEHIVVKMELVMNKTEKGEAVRMNALKVKEITDN 304
++ + IG R + K ++ + ++++ EKG+ +R N ++E D
Sbjct: 373 GDQRLNGRMVEDVLEIGVRIEGGVFTKSGLMSCFDQILSQ-EKGKKLRENLRALRETADR 431
Query: 305 AFTNEENCKGSSVK 318
A KGSS +
Sbjct: 432 AV----GPKGSSTE 441
>pdb|3HBF|A Chain A, Structure Of Ugt78g1 Complexed With Myricetin And Udp
pdb|3HBJ|A Chain A, Structure Of Ugt78g1 Complexed With Udp
Length = 454
Score = 91.3 bits (225), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 67/189 (35%), Positives = 87/189 (46%), Gaps = 33/189 (17%)
Query: 128 AKEHGISAELCKNWLDTKSCISVLYVSFGSQNKIAVSQKMQLAMALDASGKNFIWIVRPP 187
+ EHG C WLD SV+Y+SFGS + LA +L+ G FIW R
Sbjct: 258 SDEHG-----CLEWLDQHENSSVVYISFGSVVTPPPHELTALAESLEECGFPFIWSFRG- 311
Query: 188 IGFDINSEFKANEWLPRGFEERVKGQGLVVHKWAPQVEILSHKSISAFLSHCGWNLIC-- 245
E LP+GF ER K +G +V WAPQVEIL H S+ FL+H GWN +
Sbjct: 312 ---------DPKEKLPKGFLERTKTKGKIV-AWAPQVEILKHSSVGVFLTHSGWNSVLEC 361
Query: 246 --------ARSFVSWGADNWV------AIGSRADELCRLKEHIVVKMELVMNKTEKGEAV 291
+R F N + IG D KE I +EL M+ +EKG +
Sbjct: 362 IVGGVPMISRPFFGDQGLNTILTESVLEIGVGVDNGVLTKESIKKALELTMS-SEKGGIM 420
Query: 292 RMNALKVKE 300
R +K+KE
Sbjct: 421 RQKIVKLKE 429
>pdb|2PQ6|A Chain A, Crystal Structure Of Medicago Truncatula Ugt85h2- Insights
Into The Structural Basis Of A Multifunctional (Iso)
Flavonoid Glycosyltransferase
Length = 482
Score = 80.9 bits (198), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 69/272 (25%), Positives = 122/272 (44%), Gaps = 43/272 (15%)
Query: 78 LAYYLRVADGSDSISTVLQKVLPE-RTNADGILVNTIEELDKIG-----LEAKLEPAKEH 131
L +++ VAD + +T+L E ++ L +TI + IG L+ + +
Sbjct: 213 LEFFIEVADRVNKDTTILLNTFNELESDVINALSSTIPSIYPIGPLPSLLKQTPQIHQLD 272
Query: 132 GISAEL------CKNWLDTKSCISVLYVSFGSQNKIAVSQKMQLAMALDASGKNFIWIVR 185
+ + L C +WL++K SV+YV+FGS + Q ++ A L K+F+WI+R
Sbjct: 273 SLDSNLWKEDTECLDWLESKEPGSVVYVNFGSTTVMTPEQLLEFAWGLANCKKSFLWIIR 332
Query: 186 PPIGFDINSEFKANEWLPRGFEERVKGQGLVVHKWAPQVEILSHKSISAFLSHCGWN--- 242
P + + F + F + +GL+ W PQ ++L+H SI FL+HCGWN
Sbjct: 333 PDLVIGGSVIFSSE------FTNEIADRGLIA-SWCPQDKVLNHPSIGGFLTHCGWNSTT 385
Query: 243 --------LICARSFVSWGAD-----NWVAIGSRADELCRLKEHIVVKMELVMNKTEKGE 289
++C F D N IG D + +E + E++ +KG+
Sbjct: 386 ESICAGVPMLCWPFFADQPTDCRFICNEWEIGMEIDTNVKREELAKLINEVIAG--DKGK 443
Query: 290 AVRMNALKVKEITDNAFTNEENCKGSSVKAMD 321
++ A+++K+ EEN + M+
Sbjct: 444 KMKQKAMELKK------KAEENTRPGGCSYMN 469
>pdb|2ACW|A Chain A, Crystal Structure Of Medicago Truncatula Ugt71g1 Complexed
With Udp-Glucose
pdb|2ACW|B Chain B, Crystal Structure Of Medicago Truncatula Ugt71g1 Complexed
With Udp-Glucose
Length = 465
Score = 76.3 bits (186), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 55/171 (32%), Positives = 82/171 (47%), Gaps = 37/171 (21%)
Query: 99 LPER-TNADGILVNTIEELDKIGLEA------KLEPAKEHG---------------ISAE 136
L ER + GI+VNT +L++ ++A K+ P G +
Sbjct: 205 LAERFRDTKGIIVNTFSDLEQSSIDALYDHDEKIPPIYAVGPLLDLKGQPNPKLDQAQHD 264
Query: 137 LCKNWLDTKSCISVLYVSFGSQN-KIAVSQKMQLAMALDASGKNFIWIVRPPIGFDINSE 195
L WLD + SV+++ FGS SQ ++A+ L SG F+W S
Sbjct: 265 LILKWLDEQPDKSVVFLCFGSMGVSFGPSQIREIALGLKHSGVRFLW-----------SN 313
Query: 196 FKANEWLPRGFEE--RVKGQGLVVHKWAPQVEILSHKSISAFLSHCGWNLI 244
+ P GF E ++G+G++ WAPQVE+L+HK+I F+SHCGWN I
Sbjct: 314 SAEKKVFPEGFLEWMELEGKGMIC-GWAPQVEVLAHKAIGGFVSHCGWNSI 363
>pdb|2ACV|A Chain A, Crystal Structure Of Medicago Truncatula Ugt71g1
pdb|2ACV|B Chain B, Crystal Structure Of Medicago Truncatula Ugt71g1
Length = 463
Score = 75.9 bits (185), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 55/171 (32%), Positives = 82/171 (47%), Gaps = 37/171 (21%)
Query: 99 LPER-TNADGILVNTIEELDKIGLEA------KLEPAKEHG---------------ISAE 136
L ER + GI+VNT +L++ ++A K+ P G +
Sbjct: 205 LAERFRDTKGIIVNTFSDLEQSSIDALYDHDEKIPPIYAVGPLLDLKGQPNPKLDQAQHD 264
Query: 137 LCKNWLDTKSCISVLYVSFGSQN-KIAVSQKMQLAMALDASGKNFIWIVRPPIGFDINSE 195
L WLD + SV+++ FGS SQ ++A+ L SG F+W S
Sbjct: 265 LILKWLDEQPDKSVVFLCFGSMGVSFGPSQIREIALGLKHSGVRFLW-----------SN 313
Query: 196 FKANEWLPRGFEE--RVKGQGLVVHKWAPQVEILSHKSISAFLSHCGWNLI 244
+ P GF E ++G+G++ WAPQVE+L+HK+I F+SHCGWN I
Sbjct: 314 SAEKKVFPEGFLEWMELEGKGMIC-GWAPQVEVLAHKAIGGFVSHCGWNSI 363
>pdb|2O6L|A Chain A, Crystal Structure Of The Udp-Glucuronic Acid Binding
Domain Of The Human Drug Metabolizing
Udp-Glucuronosyltransferase 2b7
pdb|2O6L|B Chain B, Crystal Structure Of The Udp-Glucuronic Acid Binding
Domain Of The Human Drug Metabolizing
Udp-Glucuronosyltransferase 2b7
Length = 170
Score = 33.5 bits (75), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 22/44 (50%)
Query: 201 WLPRGFEERVKGQGLVVHKWAPQVEILSHKSISAFLSHCGWNLI 244
W G + G ++KW PQ ++L H AF++H G N I
Sbjct: 56 WRFDGNKPDTLGLNTRLYKWIPQNDLLGHPKTRAFITHGGANGI 99
>pdb|2IYA|A Chain A, The Crystal Structure Of Macrolide Glycosyltransferases: A
Blueprint For Antibiotic Engineering
pdb|2IYA|B Chain B, The Crystal Structure Of Macrolide Glycosyltransferases: A
Blueprint For Antibiotic Engineering
Length = 424
Score = 30.8 bits (68), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 12/24 (50%), Positives = 18/24 (75%), Gaps = 2/24 (8%)
Query: 217 VHKWAPQVEILSHKSISAFLSHCG 240
VH+W PQ++IL+ SAF++H G
Sbjct: 309 VHQWVPQLDILTKA--SAFITHAG 330
>pdb|2J6B|A Chain A, Crystal Structure Of Afv3-109, A Highly Conserved Protein
From Crenarchaeal Viruses
pdb|2J6C|A Chain A, Crystal Structure Of Afv3-109, A Highly Conserved Protein
From Crenarchaeal Viruses
Length = 109
Score = 30.4 bits (67), Expect = 1.4, Method: Composition-based stats.
Identities = 16/41 (39%), Positives = 26/41 (63%), Gaps = 5/41 (12%)
Query: 82 LRVADGSDSISTVLQKVLPERTNADGILVNTIEELDKIGLE 122
++V G ++ +L++ LPE G++V T EEL+KIG E
Sbjct: 67 IKVTHGDRILAFMLKQRLPE-----GVVVKTTEELEKIGYE 102
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.134 0.408
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,608,319
Number of Sequences: 62578
Number of extensions: 371373
Number of successful extensions: 914
Number of sequences better than 100.0: 10
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 895
Number of HSP's gapped (non-prelim): 11
length of query: 334
length of database: 14,973,337
effective HSP length: 99
effective length of query: 235
effective length of database: 8,778,115
effective search space: 2062857025
effective search space used: 2062857025
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.6 bits)