BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 040219
(100 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2LO1|A Chain A, Nmr Structure Of The Protein Bc008182, A Dnaj-Like
Domain From Homo Sapiens
Length = 71
Score = 55.5 bits (132), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 27/60 (45%), Positives = 35/60 (58%), Gaps = 1/60 (1%)
Query: 39 SLYEVLRIEPTTMISEIKTVYRSLVKVYHPDLSGN-GRDFTKIHNAYETLSDPKARVVYD 97
+ Y+VL ++P E+K YR L YHPD + N G F +I AYE LSD K R +YD
Sbjct: 7 TYYDVLGVKPNATQEELKKAYRKLALKYHPDKNPNEGEKFKQISQAYEVLSDAKKRELYD 66
>pdb|2OCH|A Chain A, J-domain Of Dnj-12 From Caenorhabditis Elegans
Length = 73
Score = 54.7 bits (130), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 28/68 (41%), Positives = 39/68 (57%), Gaps = 3/68 (4%)
Query: 32 MVPGTGGSLYEVLRIEPTTMISEIKTVYRSLVKVYHPDLSGNG-RDFTKIHNAYETLSDP 90
MV TG Y+VL ++P +E+K YR + +HPD + +G F +I AYE LSD
Sbjct: 4 MVKETG--YYDVLGVKPDASDNELKKAYRKMALKFHPDKNPDGAEQFKQISQAYEVLSDE 61
Query: 91 KARVVYDM 98
K R +YD
Sbjct: 62 KKRQIYDQ 69
>pdb|2O37|A Chain A, J-Domain Of Sis1 Protein, Hsp40 Co-Chaperone From
Saccharomyces Cerevisiae
Length = 92
Score = 50.4 bits (119), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 35/60 (58%), Gaps = 1/60 (1%)
Query: 40 LYEVLRIEPTTMISEIKTVYRSLVKVYHPDL-SGNGRDFTKIHNAYETLSDPKARVVYDM 98
LY++L + P+ E+K YR YHPD +G+ F +I A+E L+DP+ R +YD
Sbjct: 10 LYDLLGVSPSANEQELKKGYRKAALKYHPDKPTGDTEKFKEISEAFEILNDPQKREIYDQ 69
>pdb|2KQX|A Chain A, Nmr Structure Of The J-Domain (Residues 2-72) In The
Escherichia Coli Cbpa
Length = 73
Score = 48.5 bits (114), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 24/62 (38%), Positives = 35/62 (56%), Gaps = 5/62 (8%)
Query: 41 YEVLRIEPTTMISEIKTVYRSLVKVYHPDLS----GNGRDFTKIHNAYETLSDPKARVVY 96
Y ++ ++PT + IKT YR L + YHPD+S R F ++ A+E LSD + R Y
Sbjct: 8 YAIMGVKPTDDLKTIKTAYRRLARKYHPDVSKEPDAEAR-FKEVAEAWEVLSDEQRRAEY 66
Query: 97 DM 98
D
Sbjct: 67 DQ 68
>pdb|3LZ8|A Chain A, Structure Of A Putative Chaperone Dnaj From Klebsiella
Pneumoniae Subsp. Pneumoniae Mgh 78578 At 2.9 A
Resolution.
pdb|3LZ8|B Chain B, Structure Of A Putative Chaperone Dnaj From Klebsiella
Pneumoniae Subsp. Pneumoniae Mgh 78578 At 2.9 A
Resolution
Length = 329
Score = 47.4 bits (111), Expect = 2e-06, Method: Composition-based stats.
Identities = 23/60 (38%), Positives = 32/60 (53%), Gaps = 3/60 (5%)
Query: 41 YEVLRIEPTTMISEIKTVYRSLVKVYHPDLSGNG---RDFTKIHNAYETLSDPKARVVYD 97
Y +L ++PT + IKT YR L + YHPD+S F + A+E L D + R YD
Sbjct: 31 YAILGVQPTDDLKTIKTAYRRLARKYHPDVSKENDAEAKFKDLAEAWEVLKDEQRRAEYD 90
>pdb|1BQZ|A Chain A, J-Domain (Residues 1-77) Of The Escherichia Coli
N-Terminal Fragment (Residues 1-78) Of The Molecular
Chaperone Dnaj, Nmr, 20 Structures
Length = 77
Score = 47.0 bits (110), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 32/62 (51%), Gaps = 4/62 (6%)
Query: 41 YEVLRIEPTTMISEIKTVYRSLVKVYHPDLSGNGRD----FTKIHNAYETLSDPKARVVY 96
YE+L + T EI+ Y+ L YHPD + ++ F +I AYE L+D + R Y
Sbjct: 6 YEILGVSKTAEEREIRKAYKRLAMKYHPDRNQGDKEAEAKFKEIKEAYEVLTDSQKRAAY 65
Query: 97 DM 98
D
Sbjct: 66 DQ 67
>pdb|1XBL|A Chain A, Nmr Structure Of The J-Domain (Residues 2-76) In The
Escherichia Coli N-Terminal Fragment (Residues 2-108)
Of The Molecular Chaperone Dnaj, 20 Structures
Length = 107
Score = 47.0 bits (110), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 32/64 (50%), Gaps = 4/64 (6%)
Query: 39 SLYEVLRIEPTTMISEIKTVYRSLVKVYHPDLSGNGRD----FTKIHNAYETLSDPKARV 94
YE+L + T EI+ Y+ L YHPD + ++ F +I AYE L+D + R
Sbjct: 4 DYYEILGVSKTAEEREIRKAYKRLAMKYHPDRNQGDKEAEAKFKEIKEAYEVLTDSQKRA 63
Query: 95 VYDM 98
YD
Sbjct: 64 AYDQ 67
>pdb|1BQ0|A Chain A, J-Domain (Residues 1-77) Of The Escherichia Coli
N-Terminal Fragment (Residues 1-104) Of The Molecular
Chaperone Dnaj, Nmr, 20 Structures
Length = 103
Score = 46.6 bits (109), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 32/64 (50%), Gaps = 4/64 (6%)
Query: 39 SLYEVLRIEPTTMISEIKTVYRSLVKVYHPDLSGNGRD----FTKIHNAYETLSDPKARV 94
YE+L + T EI+ Y+ L YHPD + ++ F +I AYE L+D + R
Sbjct: 4 DYYEILGVSKTAEEREIRKAYKRLAMKYHPDRNQGDKEAEAKFKEIKEAYEVLTDSQKRA 63
Query: 95 VYDM 98
YD
Sbjct: 64 AYDQ 67
>pdb|2DN9|A Chain A, Solution Structure Of J-Domain From The Dnaj Homolog,
Human Tid1 Protein
Length = 79
Score = 46.2 bits (108), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 33/67 (49%), Gaps = 4/67 (5%)
Query: 35 GTGGSLYEVLRIEPTTMISEIKTVYRSLVKVYHPDLSGNG----RDFTKIHNAYETLSDP 90
G+ G Y++L + EIK Y L K YHPD + + F+++ AYE LSD
Sbjct: 4 GSSGDYYQILGVPRNASQKEIKKAYYQLAKKYHPDTNKDDPKAKEKFSQLAEAYEVLSDE 63
Query: 91 KARVVYD 97
R YD
Sbjct: 64 VKRKQYD 70
>pdb|2DMX|A Chain A, Solution Structure Of The J Domain Of Dnaj Homolog
Subfamily B Member 8
Length = 92
Score = 46.2 bits (108), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 38/73 (52%), Gaps = 10/73 (13%)
Query: 35 GTGGS-----LYEVLRIEPTTMISEIKTVYRSLVKVYHPDLSGNGRD-----FTKIHNAY 84
G+ GS YEVL ++ + +IK YR L +HPD + + ++ F + AY
Sbjct: 1 GSSGSSGMANYYEVLGVQASASPEDIKKAYRKLALRWHPDKNPDNKEEAEKKFKLVSEAY 60
Query: 85 ETLSDPKARVVYD 97
E LSD K R +YD
Sbjct: 61 EVLSDSKKRSLYD 73
>pdb|2CTW|A Chain A, Solution Structure Of J-Domain From Mouse Dnaj Subfamily
C Menber 5
Length = 109
Score = 44.7 bits (104), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 36/66 (54%), Gaps = 4/66 (6%)
Query: 36 TGGSLYEVLRIEPTTMISEIKTVYRSLVKVYHPDLSGNGRD----FTKIHNAYETLSDPK 91
+G SLY VL ++ +IK YR L YHPD + + + F +I+NA+ L+D
Sbjct: 15 SGESLYHVLGLDKNATSDDIKKSYRKLALKYHPDKNPDNPEAADKFKEINNAHAILTDAT 74
Query: 92 ARVVYD 97
R +YD
Sbjct: 75 KRNIYD 80
>pdb|2EJ7|A Chain A, Solution Structure Of The Dnaj Domain Of The Human
Protein Hcg3, A Hypothetical Protein Tmp_locus_21
Length = 82
Score = 43.9 bits (102), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 35/73 (47%), Gaps = 10/73 (13%)
Query: 35 GTGGS-----LYEVLRIEPTTMISEIKTVYRSLVKVYHPDLSGNGRD-----FTKIHNAY 84
G+ GS YEVL + IK YR L +HPD + ++ F ++ AY
Sbjct: 1 GSSGSSGMVDYYEVLDVPRQASSEAIKKAYRKLALKWHPDKNPENKEEAERRFKQVAEAY 60
Query: 85 ETLSDPKARVVYD 97
E LSD K R +YD
Sbjct: 61 EVLSDAKKRDIYD 73
>pdb|1HDJ|A Chain A, Human Hsp40 (Hdj-1), Nmr
Length = 77
Score = 43.5 bits (101), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 31/64 (48%), Gaps = 3/64 (4%)
Query: 37 GGSLYEVLRIEPTTMISEIKTVYRSLVKVYHPDLS---GNGRDFTKIHNAYETLSDPKAR 93
G Y+ L + EIK YR YHPD + G F +I AY+ LSDP+ R
Sbjct: 2 GKDYYQTLGLARGASDEEIKRAYRRQALRYHPDKNKEPGAEEKFKEIAEAYDVLSDPRKR 61
Query: 94 VVYD 97
++D
Sbjct: 62 EIFD 65
>pdb|2CTP|A Chain A, Solution Structure Of J-Domain From Human Dnaj Subfamily
B Menber 12
Length = 78
Score = 43.1 bits (100), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 32/67 (47%), Gaps = 3/67 (4%)
Query: 35 GTGGSLYEVLRIEPTTMISEIKTVYRSLVKVYHPDLS---GNGRDFTKIHNAYETLSDPK 91
G+ G YE+L + ++K YR L +HPD + G F I AY LS+P+
Sbjct: 4 GSSGDYYEILGVSRGASDEDLKKAYRRLALKFHPDKNHAPGATEAFKAIGTAYAVLSNPE 63
Query: 92 ARVVYDM 98
R YD
Sbjct: 64 KRKQYDQ 70
>pdb|2LGW|A Chain A, Solution Structure Of The J Domain Of Hsj1a
Length = 99
Score = 42.7 bits (99), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 33/64 (51%), Gaps = 5/64 (7%)
Query: 39 SLYEVLRIEPTTMISEIKTVYRSLVKVYHPDLSGNGRDFT-----KIHNAYETLSDPKAR 93
S YE+L + + +IK YR +HPD + + ++F ++ AYE LSD R
Sbjct: 3 SYYEILDVPRSASADDIKKAYRRKALQWHPDKNPDNKEFAEKKFKEVAEAYEVLSDKHKR 62
Query: 94 VVYD 97
+YD
Sbjct: 63 EIYD 66
>pdb|2CUG|A Chain A, Solution Structure Of The J Domain Of The Pseudo Dnaj
Protein, Mouse Hypothetical Mkiaa0962
Length = 88
Score = 42.4 bits (98), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 32/60 (53%), Gaps = 3/60 (5%)
Query: 41 YEVLRIEPTTMISEIKTVYRSLVKVYHPDLS---GNGRDFTKIHNAYETLSDPKARVVYD 97
Y VL + T ++IK Y+ L + +HPD + G F +I AYE LS+ + R YD
Sbjct: 20 YRVLGVSRTASQADIKKAYKKLAREWHPDKNKDPGAEDRFIQISKAYEILSNEEKRTNYD 79
>pdb|3APO|A Chain A, Crystal Structure Of Full-Length Erdj5
Length = 780
Score = 39.7 bits (91), Expect = 4e-04, Method: Composition-based stats.
Identities = 22/63 (34%), Positives = 30/63 (47%), Gaps = 4/63 (6%)
Query: 39 SLYEVLRIEPTTMISEIKTVYRSLVKVYHPDLSGNGR----DFTKIHNAYETLSDPKARV 94
+ Y +L + T EI+ ++ L HPD + N DF KI+ AYE L D R
Sbjct: 22 NFYSLLGVSKTASSREIRQAFKKLALKLHPDKNPNNPNAHGDFLKINRAYEVLKDEDLRK 81
Query: 95 VYD 97
YD
Sbjct: 82 KYD 84
>pdb|3APQ|A Chain A, Crystal Structure Of J-Trx1 Fragment Of Erdj5
pdb|3APQ|B Chain B, Crystal Structure Of J-Trx1 Fragment Of Erdj5
Length = 210
Score = 38.9 bits (89), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 30/63 (47%), Gaps = 4/63 (6%)
Query: 39 SLYEVLRIEPTTMISEIKTVYRSLVKVYHPDLSGNG----RDFTKIHNAYETLSDPKARV 94
+ Y +L + T EI+ ++ L HPD + N DF KI+ AYE L D R
Sbjct: 3 NFYSLLGVSKTASSREIRQAFKKLALKLHPDKNPNNPNAHGDFLKINRAYEVLKDEDLRK 62
Query: 95 VYD 97
YD
Sbjct: 63 KYD 65
>pdb|2CTR|A Chain A, Solution Structure Of J-Domain From Human Dnaj Subfamily
B Menber 9
Length = 88
Score = 38.1 bits (87), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 30/60 (50%), Gaps = 3/60 (5%)
Query: 41 YEVLRIEPTTMISEIKTVYRSLVKVYHPDLSGN---GRDFTKIHNAYETLSDPKARVVYD 97
Y++L + + +IK + L YHPD + + F +I AYETLSD R YD
Sbjct: 10 YDILGVPKSASERQIKKAFHKLAMKYHPDKNKSPDAEAKFREIAEAYETLSDANRRKEYD 69
>pdb|2L6L|A Chain A, Solution Structure Of Human J-Protein Co-Chaperone, Dph4
Length = 155
Score = 37.4 bits (85), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 18/71 (25%), Positives = 34/71 (47%), Gaps = 10/71 (14%)
Query: 39 SLYEVLRIEPTTMISEIKTVYRSLVKVYHPDLSGNG----------RDFTKIHNAYETLS 88
Y +L +P+ IS++K Y+ L+ +YHPD + F +I A++ L
Sbjct: 11 DWYSILGADPSANISDLKQKYQKLILMYHPDKQSTDVPAGTVEECVQKFIEIDQAWKILG 70
Query: 89 DPKARVVYDMS 99
+ + + YD+
Sbjct: 71 NEETKREYDLQ 81
>pdb|1WJZ|A Chain A, Soluiotn Structure Of J-Domain Of Mouse Dnaj Like
Protein
Length = 94
Score = 37.4 bits (85), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 17/69 (24%), Positives = 35/69 (50%), Gaps = 10/69 (14%)
Query: 40 LYEVLRIEPTTMISEIKTVYRSLVKVYHPD----------LSGNGRDFTKIHNAYETLSD 89
Y +L +P+ +S++K Y+ L+ +YHPD + + F +I A++ L +
Sbjct: 18 WYSILGADPSANMSDLKQKYQKLILLYHPDKQSADVPAGTMEECMQKFIEIDQAWKILGN 77
Query: 90 PKARVVYDM 98
+ + YD+
Sbjct: 78 EETKKKYDL 86
>pdb|2YUA|A Chain A, Solution Structure Of The Dnaj Domain From Human Williams-
Beuren Syndrome Chromosome Region 18 Protein
Length = 99
Score = 37.0 bits (84), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 31/66 (46%), Gaps = 4/66 (6%)
Query: 39 SLYEVLRIEPTTMISEIKTVYRSLVKVYHPDLSGNGRD----FTKIHNAYETLSDPKARV 94
+LY++L + T ++IK Y +YHPD + + FT+I AY L R
Sbjct: 18 ALYDLLGVPSTATQAQIKAAYYRQCFLYHPDRNSGSAEAAERFTRISQAYVVLGSATLRR 77
Query: 95 VYDMSL 100
YD L
Sbjct: 78 KYDRGL 83
>pdb|2QSA|A Chain A, Crystal Structure Of J-Domain Of Dnaj Homolog Dnj-2
Precursor From C.Elegans
Length = 109
Score = 36.2 bits (82), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 33/70 (47%), Gaps = 8/70 (11%)
Query: 39 SLYEVLRIEPTTMISE-IKTVYRSLVKVYHPDLSGNGRD-------FTKIHNAYETLSDP 90
+ Y+VL + + + YR+L + +HPD N + F I AYETL D
Sbjct: 16 NCYDVLEVNREEFDKQKLAKAYRALARKHHPDRVKNKEEKLLAEERFRVIATAYETLKDD 75
Query: 91 KARVVYDMSL 100
+A+ YD L
Sbjct: 76 EAKTNYDYYL 85
>pdb|3UO3|A Chain A, Jac1 Co-Chaperone From Saccharomyces Cerevisiae, 5-182
Clone
pdb|3UO3|B Chain B, Jac1 Co-Chaperone From Saccharomyces Cerevisiae, 5-182
Clone
Length = 181
Score = 35.0 bits (79), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
Query: 53 SEIKTVYRSLVKVYHPDLSGNGRDFTK-IHNAYETLSDPKARVVYDMSL 100
S ++ YR L +HPD++ G + + ++ AY TL DP R Y + L
Sbjct: 33 SRLRKEYRQLQAQHHPDMAQQGSEQSSTLNQAYHTLKDPLRRSQYMLKL 81
>pdb|3UO2|A Chain A, Jac1 Co-Chaperone From Saccharomyces Cerevisiae
pdb|3UO2|B Chain B, Jac1 Co-Chaperone From Saccharomyces Cerevisiae
Length = 175
Score = 35.0 bits (79), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
Query: 53 SEIKTVYRSLVKVYHPDLSGNGRDFTK-IHNAYETLSDPKARVVYDMSL 100
S ++ YR L +HPD++ G + + ++ AY TL DP R Y + L
Sbjct: 25 SRLRKEYRQLQAQHHPDMAQQGSEQSSTLNQAYHTLKDPLRRSQYMLKL 73
>pdb|4IT5|A Chain A, Chaperone Hscb From Vibrio Cholerae
pdb|4IT5|B Chain B, Chaperone Hscb From Vibrio Cholerae
pdb|4IT5|C Chain C, Chaperone Hscb From Vibrio Cholerae
pdb|4IT5|D Chain D, Chaperone Hscb From Vibrio Cholerae
Length = 174
Score = 34.7 bits (78), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 31/55 (56%), Gaps = 9/55 (16%)
Query: 55 IKTVYRSLVKVYHPD--LSGNGRD-------FTKIHNAYETLSDPKARVVYDMSL 100
+ + +R+L K +HPD + + RD +I++AY+TL DP R Y +SL
Sbjct: 23 LSSQFRALQKRFHPDNFATASERDRLXAVQQAAQINDAYQTLKDPLRRAEYLLSL 77
>pdb|2Y4U|A Chain A, Crystal Structure Of Human P58(Ipk) In Space Group P312
Length = 450
Score = 33.9 bits (76), Expect = 0.027, Method: Composition-based stats.
Identities = 21/64 (32%), Positives = 29/64 (45%), Gaps = 7/64 (10%)
Query: 41 YEVLRIEPTTMISEIKTVYRSLVKVYHPDLSGN-------GRDFTKIHNAYETLSDPKAR 93
Y++L ++ EI YR L +HPD N + F I A E LSDP+ R
Sbjct: 385 YKILGVKRNAKKQEIIKAYRKLALQWHPDNFQNEEEKKKAEKKFIDIAAAKEVLSDPEXR 444
Query: 94 VVYD 97
+D
Sbjct: 445 KKFD 448
>pdb|2Y4T|A Chain A, Crystal Structure Of The Human Co-Chaperone P58(Ipk)
pdb|2Y4T|B Chain B, Crystal Structure Of The Human Co-Chaperone P58(Ipk)
pdb|2Y4T|C Chain C, Crystal Structure Of The Human Co-Chaperone P58(Ipk)
Length = 450
Score = 33.5 bits (75), Expect = 0.031, Method: Composition-based stats.
Identities = 21/64 (32%), Positives = 29/64 (45%), Gaps = 7/64 (10%)
Query: 41 YEVLRIEPTTMISEIKTVYRSLVKVYHPDLSGN-------GRDFTKIHNAYETLSDPKAR 93
Y++L ++ EI YR L +HPD N + F I A E LSDP+ R
Sbjct: 385 YKILGVKRNAKKQEIIKAYRKLALQWHPDNFQNEEEKKKAEKKFIDIAAAKEVLSDPEMR 444
Query: 94 VVYD 97
+D
Sbjct: 445 KKFD 448
>pdb|1YDW|A Chain A, X-Ray Structure Of Gene Product From Arabidopsis
Thaliana At4g09670
pdb|1YDW|B Chain B, X-Ray Structure Of Gene Product From Arabidopsis
Thaliana At4g09670
pdb|2Q4E|A Chain A, Ensemble Refinement Of The Protein Crystal Structure Of
Gene Product From Arabidopsis Thaliana At4g09670
pdb|2Q4E|B Chain B, Ensemble Refinement Of The Protein Crystal Structure Of
Gene Product From Arabidopsis Thaliana At4g09670
Length = 362
Score = 27.3 bits (59), Expect = 2.0, Method: Composition-based stats.
Identities = 18/54 (33%), Positives = 28/54 (51%), Gaps = 3/54 (5%)
Query: 44 LRIEPTTMISEIKTVYRSLVKVYHPDLSGNGRDFTKIHNAYET-LSDPKARVVY 96
+ + P IS + + RSL K + N + TKIH +YE+ L DP+ +Y
Sbjct: 25 IHLAPNATISGVAS--RSLEKAKAFATANNYPESTKIHGSYESLLEDPEIDALY 76
>pdb|2YS8|A Chain A, Solution Structure Of The Dnaj-Like Domain From Human
Ras- Associated Protein Rap1
Length = 90
Score = 27.3 bits (59), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 14/50 (28%), Positives = 23/50 (46%), Gaps = 3/50 (6%)
Query: 41 YEVLRIEPTTMISEIKTVYRSLVKVYHPDLS---GNGRDFTKIHNAYETL 87
+++L ++P E+ YR L + HPD G+ F + NA L
Sbjct: 30 WDMLGVKPGASRDEVNKAYRKLAVLLHPDKCVAPGSEDAFKAVVNARTAL 79
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.133 0.376
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,014,893
Number of Sequences: 62578
Number of extensions: 107463
Number of successful extensions: 347
Number of sequences better than 100.0: 32
Number of HSP's better than 100.0 without gapping: 25
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 300
Number of HSP's gapped (non-prelim): 32
length of query: 100
length of database: 14,973,337
effective HSP length: 66
effective length of query: 34
effective length of database: 10,843,189
effective search space: 368668426
effective search space used: 368668426
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 45 (21.9 bits)