Query 040219
Match_columns 100
No_of_seqs 173 out of 1301
Neff 7.7
Searched_HMMs 46136
Date Fri Mar 29 06:16:27 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040219.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/040219hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0484 DnaJ DnaJ-class molecu 99.9 2.7E-25 5.9E-30 165.2 7.5 63 37-99 3-69 (371)
2 KOG0713 Molecular chaperone (D 99.9 7.5E-24 1.6E-28 154.9 7.0 65 35-99 13-81 (336)
3 PTZ00037 DnaJ_C chaperone prot 99.9 4.1E-22 8.9E-27 151.2 7.8 62 37-98 27-88 (421)
4 PRK14288 chaperone protein Dna 99.9 5.5E-22 1.2E-26 148.4 6.6 62 38-99 3-68 (369)
5 PRK14296 chaperone protein Dna 99.8 1.7E-21 3.7E-26 145.9 7.1 63 37-99 3-68 (372)
6 PF00226 DnaJ: DnaJ domain; I 99.8 2.8E-21 6.1E-26 111.6 5.4 59 39-97 1-64 (64)
7 KOG0712 Molecular chaperone (D 99.8 3.3E-21 7.1E-26 141.9 7.0 63 37-99 3-66 (337)
8 PRK14279 chaperone protein Dna 99.8 4.9E-21 1.1E-25 144.2 6.7 63 37-99 8-74 (392)
9 PRK14286 chaperone protein Dna 99.8 1E-20 2.2E-25 141.6 7.0 63 37-99 3-69 (372)
10 PRK14282 chaperone protein Dna 99.8 2.1E-20 4.6E-25 139.8 7.0 63 37-99 3-70 (369)
11 PRK14287 chaperone protein Dna 99.8 2.6E-20 5.6E-25 139.4 7.1 62 37-98 3-67 (371)
12 PRK14299 chaperone protein Dna 99.8 3.3E-20 7.2E-25 135.0 7.1 63 37-99 3-68 (291)
13 PRK14276 chaperone protein Dna 99.8 3.1E-20 6.8E-25 139.3 7.0 62 37-98 3-67 (380)
14 PRK14298 chaperone protein Dna 99.8 2.9E-20 6.3E-25 139.4 6.8 63 37-99 4-69 (377)
15 PRK14285 chaperone protein Dna 99.8 3.7E-20 8.1E-25 138.3 6.9 62 38-99 3-68 (365)
16 PRK14283 chaperone protein Dna 99.8 4.2E-20 9.1E-25 138.5 7.0 62 37-98 4-68 (378)
17 PRK14291 chaperone protein Dna 99.8 5.4E-20 1.2E-24 138.1 7.2 63 37-99 2-67 (382)
18 PRK14295 chaperone protein Dna 99.8 4.8E-20 1E-24 138.7 6.9 62 37-98 8-73 (389)
19 PRK14278 chaperone protein Dna 99.8 5.4E-20 1.2E-24 138.0 7.1 61 38-98 3-66 (378)
20 PRK14277 chaperone protein Dna 99.8 6.3E-20 1.4E-24 138.0 7.3 61 38-98 5-69 (386)
21 PRK14280 chaperone protein Dna 99.8 6.9E-20 1.5E-24 137.3 7.2 62 38-99 4-68 (376)
22 PRK14294 chaperone protein Dna 99.8 9E-20 1.9E-24 136.3 7.3 63 37-99 3-69 (366)
23 PRK14301 chaperone protein Dna 99.8 8.4E-20 1.8E-24 136.8 6.8 63 37-99 3-69 (373)
24 PRK14284 chaperone protein Dna 99.8 9.5E-20 2.1E-24 137.2 7.1 62 38-99 1-66 (391)
25 PRK14297 chaperone protein Dna 99.8 7.9E-20 1.7E-24 137.1 6.4 62 38-99 4-69 (380)
26 KOG0715 Molecular chaperone (D 99.8 1.4E-19 3.1E-24 131.6 7.1 63 37-99 42-107 (288)
27 PRK14281 chaperone protein Dna 99.8 1.6E-19 3.5E-24 136.2 6.8 62 38-99 3-68 (397)
28 PRK10767 chaperone protein Dna 99.8 2.2E-19 4.7E-24 134.4 7.2 63 37-99 3-69 (371)
29 KOG0716 Molecular chaperone (D 99.8 2.8E-19 6.1E-24 127.8 5.9 63 37-99 30-96 (279)
30 PRK14300 chaperone protein Dna 99.8 3.9E-19 8.4E-24 133.1 6.7 62 38-99 3-67 (372)
31 KOG0717 Molecular chaperone (D 99.8 3E-19 6.5E-24 135.0 6.1 65 34-98 4-73 (508)
32 PRK14290 chaperone protein Dna 99.8 4.4E-19 9.6E-24 132.5 6.8 61 38-98 3-68 (365)
33 TIGR02349 DnaJ_bact chaperone 99.8 4.9E-19 1.1E-23 131.7 7.0 60 39-98 1-63 (354)
34 smart00271 DnaJ DnaJ molecular 99.8 6.4E-19 1.4E-23 100.3 5.5 54 38-91 1-59 (60)
35 PRK10266 curved DNA-binding pr 99.8 6E-19 1.3E-23 129.2 6.7 61 38-98 4-67 (306)
36 PRK14292 chaperone protein Dna 99.8 6.4E-19 1.4E-23 131.8 6.8 61 38-98 2-65 (371)
37 PRK14293 chaperone protein Dna 99.8 8.5E-19 1.9E-23 131.3 7.2 61 38-98 3-66 (374)
38 PRK14289 chaperone protein Dna 99.8 9.9E-19 2.1E-23 131.4 7.2 62 37-98 4-69 (386)
39 KOG0691 Molecular chaperone (D 99.8 1.4E-18 3.1E-23 126.5 6.3 63 37-99 4-70 (296)
40 cd06257 DnaJ DnaJ domain or J- 99.7 3.2E-18 6.9E-23 95.7 5.6 51 39-89 1-55 (55)
41 PHA03102 Small T antigen; Revi 99.7 2.4E-18 5.3E-23 115.1 5.5 62 38-99 5-68 (153)
42 KOG0718 Molecular chaperone (D 99.7 3.1E-18 6.8E-23 129.9 5.9 63 36-98 7-76 (546)
43 PTZ00341 Ring-infected erythro 99.7 1.3E-17 2.8E-22 135.1 7.4 64 36-99 571-637 (1136)
44 KOG0719 Molecular chaperone (D 99.7 1.4E-17 3E-22 117.3 6.0 65 35-99 11-81 (264)
45 KOG0721 Molecular chaperone (D 99.7 2.2E-17 4.7E-22 115.0 6.2 63 36-98 97-163 (230)
46 PRK05014 hscB co-chaperone Hsc 99.7 4.5E-17 9.7E-22 110.9 6.8 62 38-99 1-73 (171)
47 PRK01356 hscB co-chaperone Hsc 99.7 5.2E-17 1.1E-21 110.1 6.9 63 38-100 2-73 (166)
48 COG2214 CbpA DnaJ-class molecu 99.7 1.1E-16 2.3E-21 109.1 6.4 63 36-98 4-71 (237)
49 PRK00294 hscB co-chaperone Hsc 99.7 2.5E-16 5.4E-21 107.4 7.3 64 36-99 2-76 (173)
50 TIGR03835 termin_org_DnaJ term 99.7 1.8E-16 4E-21 126.1 7.3 62 38-99 2-66 (871)
51 PRK03578 hscB co-chaperone Hsc 99.7 3.1E-16 6.7E-21 107.2 7.0 63 37-99 5-78 (176)
52 PTZ00100 DnaJ chaperone protei 99.6 9.6E-16 2.1E-20 98.2 5.8 53 36-88 63-115 (116)
53 KOG0624 dsRNA-activated protei 99.6 1.2E-15 2.6E-20 113.5 5.2 65 34-98 390-461 (504)
54 KOG0720 Molecular chaperone (D 99.6 1.8E-15 4E-20 114.6 5.1 65 36-100 233-300 (490)
55 PHA02624 large T antigen; Prov 99.5 1.4E-14 3.1E-19 113.7 5.7 61 36-96 9-71 (647)
56 KOG0722 Molecular chaperone (D 99.5 6.4E-15 1.4E-19 105.3 3.2 65 35-99 30-97 (329)
57 PRK01773 hscB co-chaperone Hsc 99.5 8.3E-14 1.8E-18 95.0 6.9 62 38-99 2-74 (173)
58 PRK09430 djlA Dna-J like membr 99.4 1E-13 2.2E-18 100.1 5.0 54 36-89 198-262 (267)
59 KOG0550 Molecular chaperone (D 99.4 1.1E-13 2.4E-18 104.4 4.2 65 34-98 369-438 (486)
60 KOG0714 Molecular chaperone (D 99.4 3.5E-13 7.5E-18 95.6 4.3 63 37-99 2-69 (306)
61 COG5407 SEC63 Preprotein trans 99.3 1.4E-12 3E-17 99.4 4.7 62 37-98 97-167 (610)
62 TIGR00714 hscB Fe-S protein as 99.3 7.7E-12 1.7E-16 84.1 6.3 51 50-100 3-62 (157)
63 COG5269 ZUO1 Ribosome-associat 99.1 1.3E-10 2.7E-15 84.2 4.4 65 34-98 39-112 (379)
64 KOG1150 Predicted molecular ch 99.0 3.7E-10 8.1E-15 78.5 5.3 60 36-95 51-115 (250)
65 KOG0723 Molecular chaperone (D 98.9 2.9E-09 6.3E-14 67.0 5.5 54 37-90 55-108 (112)
66 KOG0568 Molecular chaperone (D 98.7 1.5E-08 3.3E-13 72.2 4.2 54 36-89 45-102 (342)
67 KOG1789 Endocytosis protein RM 98.5 1.8E-07 4E-12 77.9 5.1 52 37-88 1280-1336(2235)
68 KOG3192 Mitochondrial J-type c 98.3 7.9E-07 1.7E-11 59.6 4.1 63 36-98 6-79 (168)
69 PF03656 Pam16: Pam16; InterP 97.5 0.00023 5E-09 46.5 5.1 54 38-91 58-111 (127)
70 COG1076 DjlA DnaJ-domain-conta 97.5 6.3E-05 1.4E-09 51.2 1.8 50 38-87 113-173 (174)
71 COG1076 DjlA DnaJ-domain-conta 97.3 0.00019 4.2E-09 48.8 2.6 60 39-98 2-72 (174)
72 KOG0431 Auxilin-like protein a 96.9 0.0011 2.4E-08 51.4 4.1 29 45-73 395-423 (453)
73 PF11833 DUF3353: Protein of u 94.5 0.13 2.8E-06 35.9 5.4 38 47-88 1-38 (194)
74 PF13446 RPT: A repeated domai 94.4 0.11 2.4E-06 29.3 4.2 44 38-88 5-48 (62)
75 KOG3442 Uncharacterized conser 90.9 0.5 1.1E-05 30.8 4.0 50 38-87 59-108 (132)
76 KOG0724 Zuotin and related mol 89.6 0.43 9.4E-06 35.3 3.3 48 50-97 4-59 (335)
77 COG5552 Uncharacterized conser 89.2 2.9 6.4E-05 25.0 6.0 36 37-72 2-37 (88)
78 PF14687 DUF4460: Domain of un 89.0 0.72 1.6E-05 29.4 3.6 41 49-89 5-53 (112)
79 PF10041 DUF2277: Uncharacteri 77.5 13 0.00027 22.2 6.0 37 37-73 2-38 (78)
80 cd01388 SOX-TCF_HMG-box SOX-TC 61.5 26 0.00056 19.8 4.3 40 57-97 14-53 (72)
81 PF07709 SRR: Seven Residue Re 60.5 9.7 0.00021 15.1 1.6 13 76-88 2-14 (14)
82 PF07739 TipAS: TipAS antibiot 55.9 39 0.00085 20.5 4.7 48 45-97 51-99 (118)
83 cd01390 HMGB-UBF_HMG-box HMGB- 48.6 43 0.00094 18.0 4.1 35 59-94 15-49 (66)
84 COG0089 RplW Ribosomal protein 45.5 22 0.00048 22.0 2.3 21 43-63 25-45 (94)
85 cd01389 MATA_HMG-box MATA_HMG- 45.5 58 0.0012 18.6 4.3 38 56-94 13-50 (77)
86 PF08447 PAS_3: PAS fold; Int 44.8 4.9 0.00011 22.9 -0.7 30 38-71 6-36 (91)
87 cd00084 HMG-box High Mobility 43.3 52 0.0011 17.5 4.1 39 56-95 12-50 (66)
88 CHL00030 rpl23 ribosomal prote 41.6 29 0.00062 21.4 2.3 21 43-63 23-43 (93)
89 KOG0527 HMG-box transcription 38.9 50 0.0011 25.0 3.6 41 57-98 75-115 (331)
90 TIGR03636 L23_arch archaeal ri 38.4 36 0.00077 20.2 2.3 21 43-63 18-38 (77)
91 PF00076 RRM_1: RNA recognitio 36.6 30 0.00065 18.4 1.7 23 43-65 3-25 (70)
92 PF12725 DUF3810: Protein of u 36.6 1.2E+02 0.0026 22.6 5.4 54 37-90 81-149 (318)
93 PF15178 TOM_sub5: Mitochondri 35.4 55 0.0012 17.7 2.5 24 41-64 2-25 (51)
94 PRK05738 rplW 50S ribosomal pr 33.3 46 0.001 20.2 2.3 21 43-63 24-44 (92)
95 PF00505 HMG_box: HMG (high mo 32.5 69 0.0015 17.4 2.9 39 56-96 12-50 (69)
96 PF12434 Malate_DH: Malate deh 30.7 71 0.0015 15.3 2.6 18 51-68 9-26 (28)
97 PF11207 DUF2989: Protein of u 30.6 1.5E+02 0.0032 20.9 4.7 55 44-98 3-57 (203)
98 PF03820 Mtc: Tricarboxylate c 29.8 62 0.0013 24.2 2.9 26 47-72 45-70 (308)
99 KOG3960 Myogenic helix-loop-he 29.7 39 0.00085 24.8 1.8 13 76-88 129-141 (284)
100 PRK14548 50S ribosomal protein 29.3 60 0.0013 19.5 2.3 21 43-63 25-45 (84)
101 PF04282 DUF438: Family of unk 29.1 31 0.00068 20.2 1.0 28 43-70 6-33 (71)
102 PF06767 Sif: Sif protein; In 28.6 1.3E+02 0.0027 22.9 4.3 41 56-96 44-84 (337)
103 PF14893 PNMA: PNMA 27.7 53 0.0012 24.8 2.2 20 43-62 23-42 (331)
104 COG2879 Uncharacterized small 27.2 1.3E+02 0.0029 17.3 3.7 18 56-73 25-42 (65)
105 PF00276 Ribosomal_L23: Riboso 25.9 75 0.0016 19.1 2.3 21 43-63 24-44 (91)
106 PF04967 HTH_10: HTH DNA bindi 25.3 24 0.00051 19.4 0.0 26 38-63 27-52 (53)
107 PF12515 CaATP_NAI: Ca2+-ATPas 24.7 73 0.0016 17.2 1.8 26 71-96 12-37 (47)
108 PF10475 DUF2450: Protein of u 24.6 1.5E+02 0.0033 21.5 4.2 34 52-91 181-214 (291)
109 smart00362 RRM_2 RNA recogniti 24.6 86 0.0019 16.0 2.3 21 43-63 4-24 (72)
110 smart00360 RRM RNA recognition 24.5 85 0.0018 15.9 2.2 20 44-63 2-21 (71)
111 KOG2320 RAS effector RIN1 (con 24.0 1.1E+02 0.0024 25.3 3.4 38 45-87 396-433 (651)
112 cd01780 PLC_epsilon_RA Ubiquit 23.3 1.1E+02 0.0023 19.0 2.6 34 38-71 11-44 (93)
113 PF00880 Nebulin: Nebulin repe 23.1 96 0.0021 14.2 2.0 24 76-99 4-27 (29)
114 PF01388 ARID: ARID/BRIGHT DNA 22.9 1E+02 0.0022 18.0 2.6 9 59-67 60-68 (92)
115 PRK10613 hypothetical protein; 22.8 34 0.00073 20.2 0.3 11 51-61 64-74 (74)
116 PTZ00191 60S ribosomal protein 21.7 92 0.002 20.8 2.3 20 44-63 87-106 (145)
117 PF10769 DUF2594: Protein of u 21.5 37 0.0008 20.0 0.3 11 51-61 64-74 (74)
118 cd00590 RRM RRM (RNA recogniti 20.9 1.1E+02 0.0025 15.6 2.3 20 43-62 4-23 (74)
119 PRK09498 sifA secreted effecto 20.5 2.8E+02 0.0061 20.9 4.7 41 56-96 44-84 (336)
120 COG3195 Uncharacterized protei 20.4 2.5E+02 0.0054 19.4 4.1 39 47-85 41-117 (176)
No 1
>COG0484 DnaJ DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones]
Probab=99.92 E-value=2.7e-25 Score=165.24 Aligned_cols=63 Identities=41% Similarity=0.694 Sum_probs=60.0
Q ss_pred ccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCC-C---hHHHHHHHHHHHHhCChhHHHHhhcc
Q 040219 37 GGSLYEVLRIEPTTMISEIKTVYRSLVKVYHPDLSG-N---GRDFTKIHNAYETLSDPKARVVYDMS 99 (100)
Q Consensus 37 ~~~~y~iLgv~~~a~~~eIk~ayr~l~~~~hPD~~~-~---~~~~~~i~~Ay~~L~dp~~R~~Yd~~ 99 (100)
.+|||+||||+++||.+|||+|||+|+++||||+++ + +++|++|++||+|||||++|+.||++
T Consensus 3 ~~dyYeiLGV~k~As~~EIKkAYRkLA~kyHPD~n~g~~~AeeKFKEI~eAYEVLsD~eKRa~YD~f 69 (371)
T COG0484 3 KRDYYEILGVSKDASEEEIKKAYRKLAKKYHPDRNPGDKEAEEKFKEINEAYEVLSDPEKRAAYDQF 69 (371)
T ss_pred ccchhhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHhCCHHHHHHhhcc
Confidence 589999999999999999999999999999999999 3 67999999999999999999999975
No 2
>KOG0713 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.90 E-value=7.5e-24 Score=154.93 Aligned_cols=65 Identities=40% Similarity=0.650 Sum_probs=61.3
Q ss_pred CCccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCCC----hHHHHHHHHHHHHhCChhHHHHhhcc
Q 040219 35 GTGGSLYEVLRIEPTTMISEIKTVYRSLVKVYHPDLSGN----GRDFTKIHNAYETLSDPKARVVYDMS 99 (100)
Q Consensus 35 ~~~~~~y~iLgv~~~a~~~eIk~ayr~l~~~~hPD~~~~----~~~~~~i~~Ay~~L~dp~~R~~Yd~~ 99 (100)
...+|||+||||+.+|+..|||+|||+|++++|||++++ ++.|+.|+.||+|||||.+|+.||++
T Consensus 13 ~~~rDfYelLgV~k~Asd~eIKkAYRKLALk~HPDkNpddp~A~e~F~~in~AYEVLsDpekRk~YD~~ 81 (336)
T KOG0713|consen 13 LAGRDFYELLGVPKNASDQEIKKAYRKLALKYHPDKNPDDPNANEKFKEINAAYEVLSDPEKRKHYDTY 81 (336)
T ss_pred hcCCCHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHhh
Confidence 356999999999999999999999999999999999997 56899999999999999999999974
No 3
>PTZ00037 DnaJ_C chaperone protein; Provisional
Probab=99.87 E-value=4.1e-22 Score=151.15 Aligned_cols=62 Identities=45% Similarity=0.722 Sum_probs=60.1
Q ss_pred ccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHhCChhHHHHhhc
Q 040219 37 GGSLYEVLRIEPTTMISEIKTVYRSLVKVYHPDLSGNGRDFTKIHNAYETLSDPKARVVYDM 98 (100)
Q Consensus 37 ~~~~y~iLgv~~~a~~~eIk~ayr~l~~~~hPD~~~~~~~~~~i~~Ay~~L~dp~~R~~Yd~ 98 (100)
..|||+||||+++||.+|||+|||+++++||||++++.++|++|++||++|+||.+|..||+
T Consensus 27 ~~d~Y~vLGV~~~As~~eIKkAYrkla~k~HPDk~~~~e~F~~i~~AYevLsD~~kR~~YD~ 88 (421)
T PTZ00037 27 NEKLYEVLNLSKDCTTSEIKKAYRKLAIKHHPDKGGDPEKFKEISRAYEVLSDPEKRKIYDE 88 (421)
T ss_pred chhHHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCchHHHHHHHHHHHHHhccHHHHHHHhh
Confidence 47999999999999999999999999999999999888999999999999999999999996
No 4
>PRK14288 chaperone protein DnaJ; Provisional
Probab=99.86 E-value=5.5e-22 Score=148.35 Aligned_cols=62 Identities=40% Similarity=0.614 Sum_probs=58.5
Q ss_pred cCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCCC----hHHHHHHHHHHHHhCChhHHHHhhcc
Q 040219 38 GSLYEVLRIEPTTMISEIKTVYRSLVKVYHPDLSGN----GRDFTKIHNAYETLSDPKARVVYDMS 99 (100)
Q Consensus 38 ~~~y~iLgv~~~a~~~eIk~ayr~l~~~~hPD~~~~----~~~~~~i~~Ay~~L~dp~~R~~Yd~~ 99 (100)
.|||+||||+++||.+|||+|||+++++||||+++. .++|++|++||+||+||.+|+.||+.
T Consensus 3 ~dyY~vLgv~~~As~~eIkkayrkla~k~HPD~~~~~~~a~~~f~~i~~AYevLsd~~kR~~YD~~ 68 (369)
T PRK14288 3 LSYYEILEVEKHSNQETIKKSYRKLALKYHPDRNAGDKEAEEKFKLINEAYGVLSDEKKRALYDRY 68 (369)
T ss_pred CChHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCccHHHHHHHHHHHHHHHhccHHHHHHHHHh
Confidence 799999999999999999999999999999999873 57899999999999999999999973
No 5
>PRK14296 chaperone protein DnaJ; Provisional
Probab=99.85 E-value=1.7e-21 Score=145.85 Aligned_cols=63 Identities=37% Similarity=0.554 Sum_probs=59.0
Q ss_pred ccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCCC---hHHHHHHHHHHHHhCChhHHHHhhcc
Q 040219 37 GGSLYEVLRIEPTTMISEIKTVYRSLVKVYHPDLSGN---GRDFTKIHNAYETLSDPKARVVYDMS 99 (100)
Q Consensus 37 ~~~~y~iLgv~~~a~~~eIk~ayr~l~~~~hPD~~~~---~~~~~~i~~Ay~~L~dp~~R~~Yd~~ 99 (100)
..|||+||||+++|+.+|||+|||+++++||||++++ .++|++|++||++|+||.+|+.||+.
T Consensus 3 ~~dyY~~Lgv~~~a~~~eik~ayrkla~~~HPD~n~~~~a~~~F~~i~~AyevLsD~~KR~~YD~~ 68 (372)
T PRK14296 3 KKDYYEVLGVSKTASEQEIRQAYRKLAKQYHPDLNKSPDAHDKMVEINEAADVLLDKDKRKQYDQF 68 (372)
T ss_pred CCCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchHHHHHHHHHHHHHHhcCHHHhhhhhhc
Confidence 3799999999999999999999999999999999864 57899999999999999999999973
No 6
>PF00226 DnaJ: DnaJ domain; InterPro: IPR001623 The prokaryotic heat shock protein DnaJ interacts with the chaperone hsp70-like DnaK protein []. Structurally, the DnaJ protein consists of an N-terminal conserved domain (called 'J' domain) of about 70 amino acids, a glycine-rich region ('G' domain') of about 30 residues, a central domain containing four repeats of a CXXCXGXG motif ('CRR' domain) and a C-terminal region of 120 to 170 residues. Such a structure is shown in the following schematic representation: +------------+-+-------+-----+-----------+--------------------------------+ | N-terminal | | Gly-R | | CXXCXGXG | C-terminal | +------------+-+-------+-----+-----------+--------------------------------+ It is thought that the 'J' domain of DnaJ mediates the interaction with the dnaK protein and consists of four helices, the second of which has a charged surface that includes at least one pair of basic residues that are essential for interaction with the ATPase domain of Hsp70. The J- and CRR-domains are found in many prokaryotic and eukaryotic proteins [], either together or separately. In yeast, J-domains have been classified into 3 groups; the class III proteins are functionally distinct and do not appear to act as molecular chaperones []. ; GO: 0031072 heat shock protein binding; PDB: 2GUZ_C 2L6L_A 1HDJ_A 2EJ7_A 1FPO_C 2CUG_A 2QSA_A 2OCH_A 3BVO_B 3APQ_A ....
Probab=99.84 E-value=2.8e-21 Score=111.64 Aligned_cols=59 Identities=46% Similarity=0.776 Sum_probs=55.7
Q ss_pred CcccccccCCCCCHHHHHHHHHHHHHHhCCCCCCC-h----HHHHHHHHHHHHhCChhHHHHhh
Q 040219 39 SLYEVLRIEPTTMISEIKTVYRSLVKVYHPDLSGN-G----RDFTKIHNAYETLSDPKARVVYD 97 (100)
Q Consensus 39 ~~y~iLgv~~~a~~~eIk~ayr~l~~~~hPD~~~~-~----~~~~~i~~Ay~~L~dp~~R~~Yd 97 (100)
|||+||||+++++.++|+++|+++++.+|||+++. . +.|..|++||++|+||.+|+.||
T Consensus 1 ~~y~iLgl~~~~~~~eik~~y~~l~~~~HPD~~~~~~~~~~~~~~~i~~Ay~~L~~~~~R~~YD 64 (64)
T PF00226_consen 1 NPYEILGLPPDASDEEIKKAYRRLSKQYHPDKNSGDEAEAEEKFARINEAYEILSDPERRRRYD 64 (64)
T ss_dssp HHHHHCTSTTTSSHHHHHHHHHHHHHHTSTTTGTSTHHHHHHHHHHHHHHHHHHHSHHHHHHHH
T ss_pred ChHHHCCCCCCCCHHHHHHHHHhhhhccccccchhhhhhhhHHHHHHHHHHHHhCCHHHHHhcC
Confidence 68999999999999999999999999999999765 3 58999999999999999999998
No 7
>KOG0712 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.84 E-value=3.3e-21 Score=141.94 Aligned_cols=63 Identities=43% Similarity=0.772 Sum_probs=60.0
Q ss_pred ccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCCC-hHHHHHHHHHHHHhCChhHHHHhhcc
Q 040219 37 GGSLYEVLRIEPTTMISEIKTVYRSLVKVYHPDLSGN-GRDFTKIHNAYETLSDPKARVVYDMS 99 (100)
Q Consensus 37 ~~~~y~iLgv~~~a~~~eIk~ayr~l~~~~hPD~~~~-~~~~~~i~~Ay~~L~dp~~R~~Yd~~ 99 (100)
...+|+||||+++|+.+|||+|||+|+++||||++++ .++|++|.+||++||||++|..||+.
T Consensus 3 ~~~~y~il~v~~~As~~eikkayrkla~k~HpDkn~~~~ekfkei~~AyevLsd~ekr~~yD~~ 66 (337)
T KOG0712|consen 3 NTKLYDILGVSPDASEEEIKKAYRKLALKYHPDKNPDAGEKFKEISQAYEVLSDPEKREIYDQY 66 (337)
T ss_pred ccccceeeccCCCcCHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHhcCHHHHHHHHhh
Confidence 5789999999999999999999999999999999997 57999999999999999999999974
No 8
>PRK14279 chaperone protein DnaJ; Provisional
Probab=99.83 E-value=4.9e-21 Score=144.19 Aligned_cols=63 Identities=32% Similarity=0.539 Sum_probs=59.1
Q ss_pred ccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCCC----hHHHHHHHHHHHHhCChhHHHHhhcc
Q 040219 37 GGSLYEVLRIEPTTMISEIKTVYRSLVKVYHPDLSGN----GRDFTKIHNAYETLSDPKARVVYDMS 99 (100)
Q Consensus 37 ~~~~y~iLgv~~~a~~~eIk~ayr~l~~~~hPD~~~~----~~~~~~i~~Ay~~L~dp~~R~~Yd~~ 99 (100)
..|||+||||+++|+.+|||+|||+++++||||++++ .++|++|++||++|+||.+|+.||+.
T Consensus 8 ~~Dyy~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vLsD~~KR~~YD~~ 74 (392)
T PRK14279 8 EKDFYKELGVSSDASAEEIKKAYRKLARELHPDANPGDPAAEERFKAVSEAHDVLSDPAKRKEYDET 74 (392)
T ss_pred ccCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCChHHHHHHHHHHHHHHHhcchhhhhHHHHh
Confidence 4799999999999999999999999999999999873 47899999999999999999999973
No 9
>PRK14286 chaperone protein DnaJ; Provisional
Probab=99.83 E-value=1e-20 Score=141.65 Aligned_cols=63 Identities=38% Similarity=0.624 Sum_probs=58.8
Q ss_pred ccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCCC----hHHHHHHHHHHHHhCChhHHHHhhcc
Q 040219 37 GGSLYEVLRIEPTTMISEIKTVYRSLVKVYHPDLSGN----GRDFTKIHNAYETLSDPKARVVYDMS 99 (100)
Q Consensus 37 ~~~~y~iLgv~~~a~~~eIk~ayr~l~~~~hPD~~~~----~~~~~~i~~Ay~~L~dp~~R~~Yd~~ 99 (100)
..|||+||||+++|+.+|||+|||+++++||||+++. .++|++|++||+||+||.+|+.||+.
T Consensus 3 ~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~kR~~YD~~ 69 (372)
T PRK14286 3 ERSYYDILGVSKSANDEEIKSAYRKLAIKYHPDKNKGNKESEEKFKEATEAYEILRDPKKRQAYDQF 69 (372)
T ss_pred CCCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchHHHHHHHHHHHHHHHhccHHHHHHHHHh
Confidence 3699999999999999999999999999999999863 47999999999999999999999963
No 10
>PRK14282 chaperone protein DnaJ; Provisional
Probab=99.82 E-value=2.1e-20 Score=139.79 Aligned_cols=63 Identities=40% Similarity=0.685 Sum_probs=58.7
Q ss_pred ccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCCC-----hHHHHHHHHHHHHhCChhHHHHhhcc
Q 040219 37 GGSLYEVLRIEPTTMISEIKTVYRSLVKVYHPDLSGN-----GRDFTKIHNAYETLSDPKARVVYDMS 99 (100)
Q Consensus 37 ~~~~y~iLgv~~~a~~~eIk~ayr~l~~~~hPD~~~~-----~~~~~~i~~Ay~~L~dp~~R~~Yd~~ 99 (100)
..|||+||||+++|+.+|||+|||+++++||||+++. .++|++|++||++|+||.+|+.||+.
T Consensus 3 ~~d~y~~lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~~a~~~f~~i~~Ay~vL~d~~kR~~YD~~ 70 (369)
T PRK14282 3 KKDYYEILGVSRNATQEEIKRAYKRLVKEWHPDRHPENRKEAEQKFKEIQEAYEVLSDPQKRAMYDRF 70 (369)
T ss_pred CCChHHhcCCCCCCCHHHHHHHHHHHHHHHCCCCCccchhHHHHHHHHHHHHHHHhcChhhHHHHhhc
Confidence 3799999999999999999999999999999999864 46899999999999999999999963
No 11
>PRK14287 chaperone protein DnaJ; Provisional
Probab=99.82 E-value=2.6e-20 Score=139.44 Aligned_cols=62 Identities=37% Similarity=0.748 Sum_probs=58.4
Q ss_pred ccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCCC---hHHHHHHHHHHHHhCChhHHHHhhc
Q 040219 37 GGSLYEVLRIEPTTMISEIKTVYRSLVKVYHPDLSGN---GRDFTKIHNAYETLSDPKARVVYDM 98 (100)
Q Consensus 37 ~~~~y~iLgv~~~a~~~eIk~ayr~l~~~~hPD~~~~---~~~~~~i~~Ay~~L~dp~~R~~Yd~ 98 (100)
..|||+||||+++|+.+|||+|||+++++||||++++ +++|++|++||++|+||.+|+.||+
T Consensus 3 ~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HpD~~~~~~~~~~f~~i~~Ay~~L~d~~kR~~YD~ 67 (371)
T PRK14287 3 KRDYYEVLGVDRNASVDEVKKAYRKLARKYHPDVNKAPDAEDKFKEVKEAYDTLSDPQKKAHYDQ 67 (371)
T ss_pred CCCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCChhHHHHHHHHHHHHHHhCcHhHHHHHHh
Confidence 3699999999999999999999999999999999864 4689999999999999999999996
No 12
>PRK14299 chaperone protein DnaJ; Provisional
Probab=99.82 E-value=3.3e-20 Score=135.00 Aligned_cols=63 Identities=33% Similarity=0.645 Sum_probs=59.0
Q ss_pred ccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCCC---hHHHHHHHHHHHHhCChhHHHHhhcc
Q 040219 37 GGSLYEVLRIEPTTMISEIKTVYRSLVKVYHPDLSGN---GRDFTKIHNAYETLSDPKARVVYDMS 99 (100)
Q Consensus 37 ~~~~y~iLgv~~~a~~~eIk~ayr~l~~~~hPD~~~~---~~~~~~i~~Ay~~L~dp~~R~~Yd~~ 99 (100)
..|||+||||+++|+.+|||+|||+++++||||++++ .++|++|++||++|+||.+|..||+.
T Consensus 3 ~~d~y~vLgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~~~~f~~i~~Ay~~L~d~~kr~~yD~~ 68 (291)
T PRK14299 3 YKDYYAILGVPKNASQDEIKKAFKKLARKYHPDVNKSPGAEEKFKEINEAYTVLSDPEKRRIYDTY 68 (291)
T ss_pred CCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCChhHHHHHHHHHHHHHHhcCHHHHHHHHhc
Confidence 3799999999999999999999999999999999864 57899999999999999999999963
No 13
>PRK14276 chaperone protein DnaJ; Provisional
Probab=99.81 E-value=3.1e-20 Score=139.33 Aligned_cols=62 Identities=39% Similarity=0.716 Sum_probs=58.6
Q ss_pred ccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCCC---hHHHHHHHHHHHHhCChhHHHHhhc
Q 040219 37 GGSLYEVLRIEPTTMISEIKTVYRSLVKVYHPDLSGN---GRDFTKIHNAYETLSDPKARVVYDM 98 (100)
Q Consensus 37 ~~~~y~iLgv~~~a~~~eIk~ayr~l~~~~hPD~~~~---~~~~~~i~~Ay~~L~dp~~R~~Yd~ 98 (100)
..|||+||||+++|+.+|||+|||+++++||||++++ .++|++|++||++|+||.+|+.||+
T Consensus 3 ~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HpD~~~~~~a~~~f~~i~~Ay~vL~d~~kR~~YD~ 67 (380)
T PRK14276 3 NTEYYDRLGVSKDASQDEIKKAYRKLSKKYHPDINKEPGAEEKYKEVQEAYETLSDPQKRAAYDQ 67 (380)
T ss_pred CCCHHHhhCCCCCCCHHHHHHHHHHHHHHHCcCCCCCcCHHHHHHHHHHHHHHhcCHhhhhhHhh
Confidence 3799999999999999999999999999999999864 5789999999999999999999996
No 14
>PRK14298 chaperone protein DnaJ; Provisional
Probab=99.81 E-value=2.9e-20 Score=139.43 Aligned_cols=63 Identities=35% Similarity=0.613 Sum_probs=58.9
Q ss_pred ccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCCC---hHHHHHHHHHHHHhCChhHHHHhhcc
Q 040219 37 GGSLYEVLRIEPTTMISEIKTVYRSLVKVYHPDLSGN---GRDFTKIHNAYETLSDPKARVVYDMS 99 (100)
Q Consensus 37 ~~~~y~iLgv~~~a~~~eIk~ayr~l~~~~hPD~~~~---~~~~~~i~~Ay~~L~dp~~R~~Yd~~ 99 (100)
..|||+||||+++|+.+|||+|||+++++||||++++ .++|++|++||++|+||.+|+.||+.
T Consensus 4 ~~d~y~iLgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~~~~f~~i~~Ay~vL~d~~kR~~YD~~ 69 (377)
T PRK14298 4 TRDYYEILGLSKDASVEDIKKAYRKLAMKYHPDKNKEPDAEEKFKEISEAYAVLSDAEKRAQYDRF 69 (377)
T ss_pred CCCHHHhhCCCCCCCHHHHHHHHHHHHHHhCccccCChhHHHHHHHHHHHHHHhcchHhhhhhhhc
Confidence 3699999999999999999999999999999999864 56899999999999999999999973
No 15
>PRK14285 chaperone protein DnaJ; Provisional
Probab=99.81 E-value=3.7e-20 Score=138.34 Aligned_cols=62 Identities=34% Similarity=0.527 Sum_probs=58.4
Q ss_pred cCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCCC----hHHHHHHHHHHHHhCChhHHHHhhcc
Q 040219 38 GSLYEVLRIEPTTMISEIKTVYRSLVKVYHPDLSGN----GRDFTKIHNAYETLSDPKARVVYDMS 99 (100)
Q Consensus 38 ~~~y~iLgv~~~a~~~eIk~ayr~l~~~~hPD~~~~----~~~~~~i~~Ay~~L~dp~~R~~Yd~~ 99 (100)
.|||+||||+++|+.+|||+|||+++++||||++++ .++|++|++||++|+||.+|..||+.
T Consensus 3 ~d~y~iLgv~~~a~~~eIk~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~kr~~yd~~ 68 (365)
T PRK14285 3 RDYYEILGLSKGASKDEIKKAYRKIAIKYHPDKNKGNKEAESIFKEATEAYEVLIDDNKRAQYDRF 68 (365)
T ss_pred CCHHHhcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHcCcchhHHHHhc
Confidence 699999999999999999999999999999999874 46899999999999999999999973
No 16
>PRK14283 chaperone protein DnaJ; Provisional
Probab=99.81 E-value=4.2e-20 Score=138.55 Aligned_cols=62 Identities=40% Similarity=0.662 Sum_probs=58.6
Q ss_pred ccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCCC---hHHHHHHHHHHHHhCChhHHHHhhc
Q 040219 37 GGSLYEVLRIEPTTMISEIKTVYRSLVKVYHPDLSGN---GRDFTKIHNAYETLSDPKARVVYDM 98 (100)
Q Consensus 37 ~~~~y~iLgv~~~a~~~eIk~ayr~l~~~~hPD~~~~---~~~~~~i~~Ay~~L~dp~~R~~Yd~ 98 (100)
..|||+||||+++|+.+|||+|||+++++||||++++ .++|++|++||++|+||.+|..||+
T Consensus 4 ~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~a~~~f~~i~~Ay~~Lsd~~kR~~YD~ 68 (378)
T PRK14283 4 KRDYYEVLGVDRNADKKEIKKAYRKLARKYHPDVSEEEGAEEKFKEISEAYAVLSDDEKRQRYDQ 68 (378)
T ss_pred cCChHHhhCCCCCCCHHHHHHHHHHHHHHHCcCCCCCccHHHHHHHHHHHHHHhchhHHHHHHhh
Confidence 4799999999999999999999999999999999863 5799999999999999999999996
No 17
>PRK14291 chaperone protein DnaJ; Provisional
Probab=99.81 E-value=5.4e-20 Score=138.12 Aligned_cols=63 Identities=40% Similarity=0.721 Sum_probs=59.1
Q ss_pred ccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCCC---hHHHHHHHHHHHHhCChhHHHHhhcc
Q 040219 37 GGSLYEVLRIEPTTMISEIKTVYRSLVKVYHPDLSGN---GRDFTKIHNAYETLSDPKARVVYDMS 99 (100)
Q Consensus 37 ~~~~y~iLgv~~~a~~~eIk~ayr~l~~~~hPD~~~~---~~~~~~i~~Ay~~L~dp~~R~~Yd~~ 99 (100)
..|||+||||+++|+.++||+|||+++++||||++++ .++|++|++||++|+||.+|..||+.
T Consensus 2 ~~d~Y~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~~~~~~~~~f~~i~~Ay~vLsd~~kR~~YD~~ 67 (382)
T PRK14291 2 KKDYYEILGVSRNATQEEIKKAYRRLARKYHPDFNKNPEAEEKFKEINEAYQVLSDPEKRKLYDQF 67 (382)
T ss_pred CCCHHHhhCCCCCCCHHHHHHHHHHHHHHHCCCCCCCccHHHHHHHHHHHHHHhcCHHHHHHHhhh
Confidence 3799999999999999999999999999999999864 57899999999999999999999974
No 18
>PRK14295 chaperone protein DnaJ; Provisional
Probab=99.81 E-value=4.8e-20 Score=138.74 Aligned_cols=62 Identities=39% Similarity=0.635 Sum_probs=58.5
Q ss_pred ccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCCC----hHHHHHHHHHHHHhCChhHHHHhhc
Q 040219 37 GGSLYEVLRIEPTTMISEIKTVYRSLVKVYHPDLSGN----GRDFTKIHNAYETLSDPKARVVYDM 98 (100)
Q Consensus 37 ~~~~y~iLgv~~~a~~~eIk~ayr~l~~~~hPD~~~~----~~~~~~i~~Ay~~L~dp~~R~~Yd~ 98 (100)
..|||+||||+++|+.+|||+|||+++++||||++++ +++|++|++||++|+||.+|+.||+
T Consensus 8 ~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~~r~~yD~ 73 (389)
T PRK14295 8 EKDYYKVLGVPKDATEAEIKKAYRKLAREYHPDANKGDAKAEERFKEISEAYDVLSDEKKRKEYDE 73 (389)
T ss_pred ccCHHHhcCCCCCCCHHHHHHHHHHHHHHHCCCcCCCchhHHHHHHHHHHHHHHHCchhhHHHHHH
Confidence 3699999999999999999999999999999999863 4789999999999999999999997
No 19
>PRK14278 chaperone protein DnaJ; Provisional
Probab=99.81 E-value=5.4e-20 Score=137.99 Aligned_cols=61 Identities=36% Similarity=0.632 Sum_probs=58.1
Q ss_pred cCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCCC---hHHHHHHHHHHHHhCChhHHHHhhc
Q 040219 38 GSLYEVLRIEPTTMISEIKTVYRSLVKVYHPDLSGN---GRDFTKIHNAYETLSDPKARVVYDM 98 (100)
Q Consensus 38 ~~~y~iLgv~~~a~~~eIk~ayr~l~~~~hPD~~~~---~~~~~~i~~Ay~~L~dp~~R~~Yd~ 98 (100)
.|||+||||+++|+.+|||+|||+++++||||++++ .++|++|++||++|+||.+|..||+
T Consensus 3 ~d~y~iLgv~~~a~~~eik~ayr~la~~~hpD~~~~~~a~~~f~~i~~Ay~vL~d~~~r~~YD~ 66 (378)
T PRK14278 3 RDYYGLLGVSRNASDAEIKRAYRKLARELHPDVNPDEEAQEKFKEISVAYEVLSDPEKRRIVDL 66 (378)
T ss_pred CCcceecCCCCCCCHHHHHHHHHHHHHHHCCCCCCcHHHHHHHHHHHHHHHHhchhhhhhhhhc
Confidence 699999999999999999999999999999999875 4589999999999999999999996
No 20
>PRK14277 chaperone protein DnaJ; Provisional
Probab=99.81 E-value=6.3e-20 Score=137.95 Aligned_cols=61 Identities=44% Similarity=0.774 Sum_probs=58.0
Q ss_pred cCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCCC----hHHHHHHHHHHHHhCChhHHHHhhc
Q 040219 38 GSLYEVLRIEPTTMISEIKTVYRSLVKVYHPDLSGN----GRDFTKIHNAYETLSDPKARVVYDM 98 (100)
Q Consensus 38 ~~~y~iLgv~~~a~~~eIk~ayr~l~~~~hPD~~~~----~~~~~~i~~Ay~~L~dp~~R~~Yd~ 98 (100)
.|||+||||+++|+.+|||+|||+++++||||++++ +++|++|++||++|+||.+|..||+
T Consensus 5 ~d~y~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~kr~~yD~ 69 (386)
T PRK14277 5 KDYYEILGVDRNATEEEIKKAYRRLAKKYHPDLNPGDKEAEQKFKEINEAYEILSDPQKRAQYDQ 69 (386)
T ss_pred CCHHHhcCCCCCCCHHHHHHHHHHHHHHHCCCcCCCchHHHHHHHHHHHHHHHhCCHHHHHHHHh
Confidence 699999999999999999999999999999999874 4689999999999999999999996
No 21
>PRK14280 chaperone protein DnaJ; Provisional
Probab=99.80 E-value=6.9e-20 Score=137.33 Aligned_cols=62 Identities=42% Similarity=0.688 Sum_probs=58.6
Q ss_pred cCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCCC---hHHHHHHHHHHHHhCChhHHHHhhcc
Q 040219 38 GSLYEVLRIEPTTMISEIKTVYRSLVKVYHPDLSGN---GRDFTKIHNAYETLSDPKARVVYDMS 99 (100)
Q Consensus 38 ~~~y~iLgv~~~a~~~eIk~ayr~l~~~~hPD~~~~---~~~~~~i~~Ay~~L~dp~~R~~Yd~~ 99 (100)
.|||+||||+++|+.+|||+|||+++++||||++++ .++|++|++||++|+||.+|+.||+.
T Consensus 4 ~~~y~iLgv~~~a~~~eik~ayr~la~~~HpD~~~~~~a~~~f~~i~~Ay~vL~d~~kr~~yD~~ 68 (376)
T PRK14280 4 RDYYEVLGVSKSASKDEIKKAYRKLSKKYHPDINKEEGADEKFKEISEAYEVLSDDQKRAQYDQF 68 (376)
T ss_pred CChHHhhCCCCCCCHHHHHHHHHHHHHHHCcCCCCCccHHHHHHHHHHHHHHhccHhHHHHHHhc
Confidence 699999999999999999999999999999999864 57999999999999999999999973
No 22
>PRK14294 chaperone protein DnaJ; Provisional
Probab=99.80 E-value=9e-20 Score=136.28 Aligned_cols=63 Identities=40% Similarity=0.605 Sum_probs=58.9
Q ss_pred ccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCCC----hHHHHHHHHHHHHhCChhHHHHhhcc
Q 040219 37 GGSLYEVLRIEPTTMISEIKTVYRSLVKVYHPDLSGN----GRDFTKIHNAYETLSDPKARVVYDMS 99 (100)
Q Consensus 37 ~~~~y~iLgv~~~a~~~eIk~ayr~l~~~~hPD~~~~----~~~~~~i~~Ay~~L~dp~~R~~Yd~~ 99 (100)
..|||+||||+++|+.+|||+|||+++++||||++++ .+.|++|++||++|+||.+|+.||+.
T Consensus 3 ~~d~y~~lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~~~~~f~~~~~Ay~vL~d~~~r~~yD~~ 69 (366)
T PRK14294 3 KRDYYEILGVTRDASEEEIKKSYRKLAMKYHPDRNPGDKEAEELFKEAAEAYEVLSDPKKRGIYDQY 69 (366)
T ss_pred CCChHHHhCCCCCCCHHHHHHHHHHHHHHHCCCCCCCchHHHHHHHHHHHHHHHhccHHHHHHHHhh
Confidence 3799999999999999999999999999999999874 46899999999999999999999963
No 23
>PRK14301 chaperone protein DnaJ; Provisional
Probab=99.80 E-value=8.4e-20 Score=136.78 Aligned_cols=63 Identities=37% Similarity=0.573 Sum_probs=58.8
Q ss_pred ccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCCC----hHHHHHHHHHHHHhCChhHHHHhhcc
Q 040219 37 GGSLYEVLRIEPTTMISEIKTVYRSLVKVYHPDLSGN----GRDFTKIHNAYETLSDPKARVVYDMS 99 (100)
Q Consensus 37 ~~~~y~iLgv~~~a~~~eIk~ayr~l~~~~hPD~~~~----~~~~~~i~~Ay~~L~dp~~R~~Yd~~ 99 (100)
..|||+||||+++|+.++||+|||+++++||||++++ .++|++|++||++|+||.+|+.||+.
T Consensus 3 ~~~~y~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~kr~~yD~~ 69 (373)
T PRK14301 3 QRDYYEVLGVSRDASEDEIKKAYRKLALQYHPDRNPDNPEAEQKFKEAAEAYEVLRDAEKRARYDRF 69 (373)
T ss_pred CCChHHhcCCCCCCCHHHHHHHHHHHHHHhCCCcCCCChHHHHHHHHHHHHHHHhcchhhhhhhhhc
Confidence 3799999999999999999999999999999999874 45899999999999999999999963
No 24
>PRK14284 chaperone protein DnaJ; Provisional
Probab=99.80 E-value=9.5e-20 Score=137.16 Aligned_cols=62 Identities=37% Similarity=0.599 Sum_probs=58.2
Q ss_pred cCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCCC----hHHHHHHHHHHHHhCChhHHHHhhcc
Q 040219 38 GSLYEVLRIEPTTMISEIKTVYRSLVKVYHPDLSGN----GRDFTKIHNAYETLSDPKARVVYDMS 99 (100)
Q Consensus 38 ~~~y~iLgv~~~a~~~eIk~ayr~l~~~~hPD~~~~----~~~~~~i~~Ay~~L~dp~~R~~Yd~~ 99 (100)
.|||+||||+++|+.+|||+|||+++++||||++++ .++|++|++||++|+||.+|+.||+.
T Consensus 1 ~d~y~iLgv~~~a~~~eikkayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~kR~~YD~~ 66 (391)
T PRK14284 1 MDYYTILGVSKTASPEEIKKAYRKLAVKYHPDKNPGDAEAEKRFKEVSEAYEVLSDAQKRESYDRY 66 (391)
T ss_pred CCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchHHHHHHHHHHHHHHHhcCHHHHHHHHhc
Confidence 489999999999999999999999999999999874 56899999999999999999999963
No 25
>PRK14297 chaperone protein DnaJ; Provisional
Probab=99.80 E-value=7.9e-20 Score=137.14 Aligned_cols=62 Identities=39% Similarity=0.641 Sum_probs=58.5
Q ss_pred cCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCCC----hHHHHHHHHHHHHhCChhHHHHhhcc
Q 040219 38 GSLYEVLRIEPTTMISEIKTVYRSLVKVYHPDLSGN----GRDFTKIHNAYETLSDPKARVVYDMS 99 (100)
Q Consensus 38 ~~~y~iLgv~~~a~~~eIk~ayr~l~~~~hPD~~~~----~~~~~~i~~Ay~~L~dp~~R~~Yd~~ 99 (100)
.|||+||||+++|+.+|||+|||+++++||||++++ +++|++|++||++|+||.+|+.||+.
T Consensus 4 ~d~y~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~~r~~yD~~ 69 (380)
T PRK14297 4 KDYYEVLGLEKGASDDEIKKAFRKLAIKYHPDKNKGNKEAEEKFKEINEAYQVLSDPQKKAQYDQF 69 (380)
T ss_pred CChHHhhCCCCCCCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHhcCHhhhCchhhc
Confidence 699999999999999999999999999999999874 46899999999999999999999973
No 26
>KOG0715 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.80 E-value=1.4e-19 Score=131.64 Aligned_cols=63 Identities=40% Similarity=0.710 Sum_probs=59.3
Q ss_pred ccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCCC---hHHHHHHHHHHHHhCChhHHHHhhcc
Q 040219 37 GGSLYEVLRIEPTTMISEIKTVYRSLVKVYHPDLSGN---GRDFTKIHNAYETLSDPKARVVYDMS 99 (100)
Q Consensus 37 ~~~~y~iLgv~~~a~~~eIk~ayr~l~~~~hPD~~~~---~~~~~~i~~Ay~~L~dp~~R~~Yd~~ 99 (100)
..|||+||||+++|+..|||+||++|+++||||.+.+ .+.|++|.+||++|+|+++|.+||..
T Consensus 42 ~~d~Y~vLgv~~~At~~EIK~Af~~LaKkyHPD~n~~~~a~~kF~eI~~AYEiLsd~eKR~~YD~~ 107 (288)
T KOG0715|consen 42 KEDYYKVLGVSRNATLSEIKSAFRKLAKKYHPDVNKDKEASKKFKEISEAYEILSDEEKRQEYDVY 107 (288)
T ss_pred CcchhhhhCcCCCCCHHHHHHHHHHHHHhhCCCCCCCcchhhHHHHHHHHHHHhcCHHHHHHHHHh
Confidence 3499999999999999999999999999999999886 56899999999999999999999975
No 27
>PRK14281 chaperone protein DnaJ; Provisional
Probab=99.79 E-value=1.6e-19 Score=136.18 Aligned_cols=62 Identities=37% Similarity=0.598 Sum_probs=58.5
Q ss_pred cCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCCC----hHHHHHHHHHHHHhCChhHHHHhhcc
Q 040219 38 GSLYEVLRIEPTTMISEIKTVYRSLVKVYHPDLSGN----GRDFTKIHNAYETLSDPKARVVYDMS 99 (100)
Q Consensus 38 ~~~y~iLgv~~~a~~~eIk~ayr~l~~~~hPD~~~~----~~~~~~i~~Ay~~L~dp~~R~~Yd~~ 99 (100)
.|||+||||+++|+.+|||+|||+++++||||++++ .+.|++|++||++|+||.+|..||+.
T Consensus 3 ~d~y~iLgv~~~a~~~eikkayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~~r~~yD~~ 68 (397)
T PRK14281 3 RDYYEVLGVSRSADKDEIKKAYRKLALKYHPDKNPDNKEAEEHFKEVNEAYEVLSNDDKRRRYDQF 68 (397)
T ss_pred CChhhhcCCCCCCCHHHHHHHHHHHHHHHCCCcCCCchHHHHHHHHHHHHHHHhhhhhhhhhhhhc
Confidence 699999999999999999999999999999999874 46899999999999999999999963
No 28
>PRK10767 chaperone protein DnaJ; Provisional
Probab=99.79 E-value=2.2e-19 Score=134.35 Aligned_cols=63 Identities=41% Similarity=0.667 Sum_probs=58.7
Q ss_pred ccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCCC----hHHHHHHHHHHHHhCChhHHHHhhcc
Q 040219 37 GGSLYEVLRIEPTTMISEIKTVYRSLVKVYHPDLSGN----GRDFTKIHNAYETLSDPKARVVYDMS 99 (100)
Q Consensus 37 ~~~~y~iLgv~~~a~~~eIk~ayr~l~~~~hPD~~~~----~~~~~~i~~Ay~~L~dp~~R~~Yd~~ 99 (100)
..|||+||||+++|+.+|||+|||+++++||||++++ .+.|++|++||++|+||.+|..||+.
T Consensus 3 ~~d~y~iLgv~~~as~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~~L~d~~~r~~yd~~ 69 (371)
T PRK10767 3 KRDYYEVLGVSRNASEDEIKKAYRKLAMKYHPDRNPGDKEAEEKFKEIKEAYEVLSDPQKRAAYDQY 69 (371)
T ss_pred CCChHHhcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCcHHHHHHHHHHHHHHHHhcchhhhhHhhhc
Confidence 3799999999999999999999999999999999873 46899999999999999999999963
No 29
>KOG0716 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.78 E-value=2.8e-19 Score=127.79 Aligned_cols=63 Identities=44% Similarity=0.696 Sum_probs=59.6
Q ss_pred ccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCCC----hHHHHHHHHHHHHhCChhHHHHhhcc
Q 040219 37 GGSLYEVLRIEPTTMISEIKTVYRSLVKVYHPDLSGN----GRDFTKIHNAYETLSDPKARVVYDMS 99 (100)
Q Consensus 37 ~~~~y~iLgv~~~a~~~eIk~ayr~l~~~~hPD~~~~----~~~~~~i~~Ay~~L~dp~~R~~Yd~~ 99 (100)
..++|+||||+++++.++||++||++++++|||++++ .++|++||+||+||+||.+|..||..
T Consensus 30 ~~~LYdVLgl~k~at~d~IKKaYR~L~~k~HPD~~gd~P~~~dkf~eIN~Ay~ILsD~~kR~~YD~~ 96 (279)
T KOG0716|consen 30 RLDLYDVLGLPKTATKDEIKKAYRKLALKYHPDKNGDNPEATDKFKEINTAYAILSDPTKRNVYDEY 96 (279)
T ss_pred hhHHHHHhCCCcccchHHHHHHHHHHHHHhCCCcCCCCchhHHHHHHHHHHHHHhcChhhhhhHHHh
Confidence 5789999999999999999999999999999999886 46899999999999999999999975
No 30
>PRK14300 chaperone protein DnaJ; Provisional
Probab=99.78 E-value=3.9e-19 Score=133.15 Aligned_cols=62 Identities=32% Similarity=0.624 Sum_probs=58.3
Q ss_pred cCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCCC---hHHHHHHHHHHHHhCChhHHHHhhcc
Q 040219 38 GSLYEVLRIEPTTMISEIKTVYRSLVKVYHPDLSGN---GRDFTKIHNAYETLSDPKARVVYDMS 99 (100)
Q Consensus 38 ~~~y~iLgv~~~a~~~eIk~ayr~l~~~~hPD~~~~---~~~~~~i~~Ay~~L~dp~~R~~Yd~~ 99 (100)
.|||+||||+++|+.+|||+|||+++++||||++++ .++|++|++||++|+|+.+|..||++
T Consensus 3 ~~~y~iLgv~~~as~~eik~ayr~la~~~HPD~~~~~~~~~~f~~i~~Ay~~L~d~~~r~~yD~~ 67 (372)
T PRK14300 3 QDYYQILGVSKTASQADLKKAYLKLAKQYHPDTTDAKDAEKKFKEINAAYDVLKDEQKRAAYDRF 67 (372)
T ss_pred CChHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCcCHHHHHHHHHHHHHHhhhHhHhhHHHhc
Confidence 699999999999999999999999999999999863 56899999999999999999999973
No 31
>KOG0717 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.78 E-value=3e-19 Score=135.04 Aligned_cols=65 Identities=43% Similarity=0.636 Sum_probs=60.7
Q ss_pred CCCccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCCC-----hHHHHHHHHHHHHhCChhHHHHhhc
Q 040219 34 PGTGGSLYEVLRIEPTTMISEIKTVYRSLVKVYHPDLSGN-----GRDFTKIHNAYETLSDPKARVVYDM 98 (100)
Q Consensus 34 ~~~~~~~y~iLgv~~~a~~~eIk~ayr~l~~~~hPD~~~~-----~~~~~~i~~Ay~~L~dp~~R~~Yd~ 98 (100)
+...+.||+||||..+++..+||++||+++++||||+++. .++|+.|+.||+|||||..|+.||.
T Consensus 4 ~~~~~c~YE~L~v~~~a~d~eik~~YRklALq~HPDknpd~ieeat~~F~~i~aAYeVLSdp~eR~wyd~ 73 (508)
T KOG0717|consen 4 PFKKRCYYEVLGVERDADDDEIKKNYRKLALQYHPDKNPDRIEEATQQFQLIQAAYEVLSDPQERAWYDS 73 (508)
T ss_pred chhhhHHHHHhcccccCCHHHHHHHHHHHHHhhCCCCCCccHHHHHHHHHHHHHHHHHhcChHhhhhHHH
Confidence 4466899999999999999999999999999999999885 5689999999999999999999995
No 32
>PRK14290 chaperone protein DnaJ; Provisional
Probab=99.78 E-value=4.4e-19 Score=132.52 Aligned_cols=61 Identities=38% Similarity=0.696 Sum_probs=57.8
Q ss_pred cCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCCC-----hHHHHHHHHHHHHhCChhHHHHhhc
Q 040219 38 GSLYEVLRIEPTTMISEIKTVYRSLVKVYHPDLSGN-----GRDFTKIHNAYETLSDPKARVVYDM 98 (100)
Q Consensus 38 ~~~y~iLgv~~~a~~~eIk~ayr~l~~~~hPD~~~~-----~~~~~~i~~Ay~~L~dp~~R~~Yd~ 98 (100)
.|||+||||+++|+.+|||+|||++++++|||++++ .++|++|++||++|+||.+|..||.
T Consensus 3 ~d~y~vLgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~~a~~~f~~i~~Ay~~L~d~~~r~~yd~ 68 (365)
T PRK14290 3 KDYYKILGVDRNASQEDIKKAFRELAKKWHPDLHPGNKAEAEEKFKEISEAYEVLSDPQKRRQYDQ 68 (365)
T ss_pred CChhhhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchhHHHHHHHHHHHHHHHhcChhhhhhhcc
Confidence 699999999999999999999999999999999864 3689999999999999999999996
No 33
>TIGR02349 DnaJ_bact chaperone protein DnaJ. This model represents bacterial forms of DnaJ, part of the DnaK-DnaJ-GrpE chaperone system. The three components typically are encoded by consecutive genes. DnaJ homologs occur in many genomes, typically not near DnaK and GrpE-like genes; most such genes are not included by this family. Eukaryotic (mitochondrial and chloroplast) forms are not included in the scope of this family.
Probab=99.78 E-value=4.9e-19 Score=131.66 Aligned_cols=60 Identities=43% Similarity=0.749 Sum_probs=57.0
Q ss_pred CcccccccCCCCCHHHHHHHHHHHHHHhCCCCCCC---hHHHHHHHHHHHHhCChhHHHHhhc
Q 040219 39 SLYEVLRIEPTTMISEIKTVYRSLVKVYHPDLSGN---GRDFTKIHNAYETLSDPKARVVYDM 98 (100)
Q Consensus 39 ~~y~iLgv~~~a~~~eIk~ayr~l~~~~hPD~~~~---~~~~~~i~~Ay~~L~dp~~R~~Yd~ 98 (100)
|||+||||+++|+.+|||+||++++++||||+++. .++|++|++||++|+|+.+|..||+
T Consensus 1 d~y~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~~~~~~~~~f~~i~~Ay~vL~d~~~R~~yd~ 63 (354)
T TIGR02349 1 DYYEILGVSKDASEEEIKKAYRKLAKKYHPDRNKDKEAEEKFKEINEAYEVLSDPEKRAQYDQ 63 (354)
T ss_pred ChHHhCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCccHHHHHHHHHHHHHHhhChHHHHhhhh
Confidence 79999999999999999999999999999999863 5789999999999999999999996
No 34
>smart00271 DnaJ DnaJ molecular chaperone homology domain.
Probab=99.77 E-value=6.4e-19 Score=100.25 Aligned_cols=54 Identities=41% Similarity=0.720 Sum_probs=50.5
Q ss_pred cCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCCC-----hHHHHHHHHHHHHhCChh
Q 040219 38 GSLYEVLRIEPTTMISEIKTVYRSLVKVYHPDLSGN-----GRDFTKIHNAYETLSDPK 91 (100)
Q Consensus 38 ~~~y~iLgv~~~a~~~eIk~ayr~l~~~~hPD~~~~-----~~~~~~i~~Ay~~L~dp~ 91 (100)
+|||+||||+++++.++||++|+++++.+|||++++ .+.|..|++||++|+||.
T Consensus 1 ~~~y~vLgl~~~~~~~~ik~ay~~l~~~~HPD~~~~~~~~~~~~~~~l~~Ay~~L~~~~ 59 (60)
T smart00271 1 TDYYEILGVPRDASLDEIKKAYRKLALKYHPDKNPGDKEEAEEKFKEINEAYEVLSDPE 59 (60)
T ss_pred CCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchHHHHHHHHHHHHHHHHHcCCC
Confidence 489999999999999999999999999999999883 578999999999999985
No 35
>PRK10266 curved DNA-binding protein CbpA; Provisional
Probab=99.77 E-value=6e-19 Score=129.16 Aligned_cols=61 Identities=38% Similarity=0.705 Sum_probs=57.9
Q ss_pred cCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCCC---hHHHHHHHHHHHHhCChhHHHHhhc
Q 040219 38 GSLYEVLRIEPTTMISEIKTVYRSLVKVYHPDLSGN---GRDFTKIHNAYETLSDPKARVVYDM 98 (100)
Q Consensus 38 ~~~y~iLgv~~~a~~~eIk~ayr~l~~~~hPD~~~~---~~~~~~i~~Ay~~L~dp~~R~~Yd~ 98 (100)
.|||+||||+++++.+|||+|||++++++|||+++. ++.|++|++||++|+||.+|+.||.
T Consensus 4 ~d~y~~Lgv~~~a~~~eik~ayr~la~k~HPD~~~~~~~~~~f~~i~~Ay~~L~~~~kr~~yD~ 67 (306)
T PRK10266 4 KDYYAIMGVKPTDDLKTIKTAYRRLARKYHPDVSKEPDAEARFKEVAEAWEVLSDEQRRAEYDQ 67 (306)
T ss_pred CChHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCccHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 699999999999999999999999999999999863 6799999999999999999999996
No 36
>PRK14292 chaperone protein DnaJ; Provisional
Probab=99.77 E-value=6.4e-19 Score=131.84 Aligned_cols=61 Identities=39% Similarity=0.652 Sum_probs=58.1
Q ss_pred cCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCCC---hHHHHHHHHHHHHhCChhHHHHhhc
Q 040219 38 GSLYEVLRIEPTTMISEIKTVYRSLVKVYHPDLSGN---GRDFTKIHNAYETLSDPKARVVYDM 98 (100)
Q Consensus 38 ~~~y~iLgv~~~a~~~eIk~ayr~l~~~~hPD~~~~---~~~~~~i~~Ay~~L~dp~~R~~Yd~ 98 (100)
.|||+||||+++|+.++||+||+++++++|||++++ +++|++|++||++|+||.+|+.||+
T Consensus 2 ~d~y~~Lgv~~~a~~~~ik~ayr~l~~~~hpD~~~~~~a~~~~~~i~~Ay~vL~d~~~r~~yd~ 65 (371)
T PRK14292 2 MDYYELLGVSRTASADEIKSAYRKLALKYHPDRNKEKGAAEKFAQINEAYAVLSDAEKRAHYDR 65 (371)
T ss_pred CChHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCCChhHHHHHHHHHHHHHHhcchhhhhhHhh
Confidence 589999999999999999999999999999999874 5789999999999999999999996
No 37
>PRK14293 chaperone protein DnaJ; Provisional
Probab=99.77 E-value=8.5e-19 Score=131.34 Aligned_cols=61 Identities=39% Similarity=0.728 Sum_probs=58.0
Q ss_pred cCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCCC---hHHHHHHHHHHHHhCChhHHHHhhc
Q 040219 38 GSLYEVLRIEPTTMISEIKTVYRSLVKVYHPDLSGN---GRDFTKIHNAYETLSDPKARVVYDM 98 (100)
Q Consensus 38 ~~~y~iLgv~~~a~~~eIk~ayr~l~~~~hPD~~~~---~~~~~~i~~Ay~~L~dp~~R~~Yd~ 98 (100)
.|||+||||+++++.+|||+|||++++++|||++++ .++|++|++||++|+||.+|+.||.
T Consensus 3 ~d~y~vLgv~~~a~~~eik~ayr~la~~~HPD~~~~~~a~~~f~~i~~Ay~vL~~~~~R~~yd~ 66 (374)
T PRK14293 3 ADYYEILGVSRDADKDELKRAYRRLARKYHPDVNKEPGAEDRFKEINRAYEVLSDPETRARYDQ 66 (374)
T ss_pred CChhhhcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCcCHHHHHHHHHHHHHHHhchHHHHHHhh
Confidence 699999999999999999999999999999999864 5789999999999999999999996
No 38
>PRK14289 chaperone protein DnaJ; Provisional
Probab=99.77 E-value=9.9e-19 Score=131.42 Aligned_cols=62 Identities=39% Similarity=0.641 Sum_probs=58.5
Q ss_pred ccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCCC----hHHHHHHHHHHHHhCChhHHHHhhc
Q 040219 37 GGSLYEVLRIEPTTMISEIKTVYRSLVKVYHPDLSGN----GRDFTKIHNAYETLSDPKARVVYDM 98 (100)
Q Consensus 37 ~~~~y~iLgv~~~a~~~eIk~ayr~l~~~~hPD~~~~----~~~~~~i~~Ay~~L~dp~~R~~Yd~ 98 (100)
..|||+||||+++|+.+|||+|||+++++||||++++ .++|++|++||++|+||.+|+.||+
T Consensus 4 ~~~~y~~Lgv~~~a~~~eik~ayr~la~~~HpD~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~yD~ 69 (386)
T PRK14289 4 KRDYYEVLGVSKTATVDEIKKAYRKKAIQYHPDKNPGDKEAEEKFKEAAEAYDVLSDPDKRSRYDQ 69 (386)
T ss_pred cCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCChHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 3799999999999999999999999999999999874 4689999999999999999999996
No 39
>KOG0691 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.75 E-value=1.4e-18 Score=126.52 Aligned_cols=63 Identities=35% Similarity=0.588 Sum_probs=59.9
Q ss_pred ccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCCC----hHHHHHHHHHHHHhCChhHHHHhhcc
Q 040219 37 GGSLYEVLRIEPTTMISEIKTVYRSLVKVYHPDLSGN----GRDFTKIHNAYETLSDPKARVVYDMS 99 (100)
Q Consensus 37 ~~~~y~iLgv~~~a~~~eIk~ayr~l~~~~hPD~~~~----~~~~~~i~~Ay~~L~dp~~R~~Yd~~ 99 (100)
..|||.||||+.+++..+|+++|+..+++||||++++ .+.|+.+.+||+||+|+..|..||..
T Consensus 4 ~~dyY~lLgi~~~at~~eIkKaYr~kaL~~HPDKNp~dP~A~ekFq~L~eAy~VL~D~~~R~~YDk~ 70 (296)
T KOG0691|consen 4 DTDYYDLLGISEDATDAEIKKAYRKKALQYHPDKNPGDPQAAEKFQELSEAYEVLSDEESRAAYDKL 70 (296)
T ss_pred cchHHHHhCCCCCCCHHHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 5899999999999999999999999999999999997 46899999999999999999999974
No 40
>cd06257 DnaJ DnaJ domain or J-domain. DnaJ/Hsp40 (heat shock protein 40) proteins are highly conserved and play crucial roles in protein translation, folding, unfolding, translocation, and degradation. They act primarily by stimulating the ATPase activity of Hsp70s, an important chaperonine family. Hsp40 proteins are characterized by the presence of a J domain, which mediates the interaction with Hsp70. They may contain other domains as well, and the architectures provide a means of classification.
Probab=99.75 E-value=3.2e-18 Score=95.72 Aligned_cols=51 Identities=41% Similarity=0.729 Sum_probs=48.2
Q ss_pred CcccccccCCCCCHHHHHHHHHHHHHHhCCCCCCC----hHHHHHHHHHHHHhCC
Q 040219 39 SLYEVLRIEPTTMISEIKTVYRSLVKVYHPDLSGN----GRDFTKIHNAYETLSD 89 (100)
Q Consensus 39 ~~y~iLgv~~~a~~~eIk~ayr~l~~~~hPD~~~~----~~~~~~i~~Ay~~L~d 89 (100)
|||+||||+++++.++||++|+++++.+|||++++ .+.|..|++||++|+|
T Consensus 1 ~~y~vLgl~~~~~~~~ik~~y~~l~~~~HPD~~~~~~~~~~~~~~l~~Ay~~L~d 55 (55)
T cd06257 1 DYYDILGVPPDASDEEIKKAYRKLALKYHPDKNPDDPEAEEKFKEINEAYEVLSD 55 (55)
T ss_pred ChHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHhcC
Confidence 68999999999999999999999999999999885 5689999999999986
No 41
>PHA03102 Small T antigen; Reviewed
Probab=99.74 E-value=2.4e-18 Score=115.07 Aligned_cols=62 Identities=13% Similarity=0.301 Sum_probs=59.1
Q ss_pred cCcccccccCCCC--CHHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHhCChhHHHHhhcc
Q 040219 38 GSLYEVLRIEPTT--MISEIKTVYRSLVKVYHPDLSGNGRDFTKIHNAYETLSDPKARVVYDMS 99 (100)
Q Consensus 38 ~~~y~iLgv~~~a--~~~eIk~ayr~l~~~~hPD~~~~~~~~~~i~~Ay~~L~dp~~R~~Yd~~ 99 (100)
..+|+||||++++ |.++||+|||++++++|||++++++.|++|++||++|+|+..|..||..
T Consensus 5 ~~l~~vLGl~~~A~~s~~eIKkAYr~la~~~HPDkgg~~e~~k~in~Ay~~L~d~~~r~~yd~~ 68 (153)
T PHA03102 5 KELMDLLGLPRSAWGNLPLMRKAYLRKCLEFHPDKGGDEEKMKELNTLYKKFRESVKSLRDLDG 68 (153)
T ss_pred HHHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCchhHHHHHHHHHHHHHhhHHHhcccccc
Confidence 5679999999999 9999999999999999999999999999999999999999999999863
No 42
>KOG0718 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.74 E-value=3.1e-18 Score=129.85 Aligned_cols=63 Identities=38% Similarity=0.692 Sum_probs=58.8
Q ss_pred CccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCCC-------hHHHHHHHHHHHHhCChhHHHHhhc
Q 040219 36 TGGSLYEVLRIEPTTMISEIKTVYRSLVKVYHPDLSGN-------GRDFTKIHNAYETLSDPKARVVYDM 98 (100)
Q Consensus 36 ~~~~~y~iLgv~~~a~~~eIk~ayr~l~~~~hPD~~~~-------~~~~~~i~~Ay~~L~dp~~R~~Yd~ 98 (100)
.+.+||.+|+|+++||.+||++|||++++.+|||+..+ ++.|+.|.+||+||+||.+|+.||.
T Consensus 7 ~e~e~Ya~LNlpkdAt~eeI~~AYrr~~~lfHPDkh~dpd~K~~AE~~F~~i~~AyEVLsDp~kRaIYD~ 76 (546)
T KOG0718|consen 7 DEIELYALLNLPKDATDEEIKKAYRRLSRLFHPDKHTDPDQKKAAEEKFQRIQRAYEVLSDPQKRAIYDN 76 (546)
T ss_pred chhhHHHHhCCCcccCHHHHHHHHHHHHHhcCCcccCChhHHHHHHHHHHHHHHHHHHhcChHHHHHHHH
Confidence 35699999999999999999999999999999999874 5689999999999999999999995
No 43
>PTZ00341 Ring-infected erythrocyte surface antigen; Provisional
Probab=99.72 E-value=1.3e-17 Score=135.05 Aligned_cols=64 Identities=25% Similarity=0.417 Sum_probs=59.7
Q ss_pred CccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCCC---hHHHHHHHHHHHHhCChhHHHHhhcc
Q 040219 36 TGGSLYEVLRIEPTTMISEIKTVYRSLVKVYHPDLSGN---GRDFTKIHNAYETLSDPKARVVYDMS 99 (100)
Q Consensus 36 ~~~~~y~iLgv~~~a~~~eIk~ayr~l~~~~hPD~~~~---~~~~~~i~~Ay~~L~dp~~R~~Yd~~ 99 (100)
...+||+||||+++|+..+||+|||+++++||||++++ ..+|+.|++||++|+||.+|..||..
T Consensus 571 ~d~dYYdILGVs~dAS~~EIKKAYRKLAlkyHPDKN~~~~A~ekFq~I~EAYeVLSDp~kRk~YD~~ 637 (1136)
T PTZ00341 571 PDTLFYDILGVGVNADMKEISERYFKLAENYYPPKRSGNEGFHKFKKINEAYQILGDIDKKKMYNKF 637 (1136)
T ss_pred CCCChHHHcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHhhc
Confidence 45899999999999999999999999999999999874 46899999999999999999999973
No 44
>KOG0719 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.71 E-value=1.4e-17 Score=117.26 Aligned_cols=65 Identities=35% Similarity=0.559 Sum_probs=59.6
Q ss_pred CCccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCCC------hHHHHHHHHHHHHhCChhHHHHhhcc
Q 040219 35 GTGGSLYEVLRIEPTTMISEIKTVYRSLVKVYHPDLSGN------GRDFTKIHNAYETLSDPKARVVYDMS 99 (100)
Q Consensus 35 ~~~~~~y~iLgv~~~a~~~eIk~ayr~l~~~~hPD~~~~------~~~~~~i~~Ay~~L~dp~~R~~Yd~~ 99 (100)
....|+|+||||..+|+..+|++||+++++++|||++.. .+.|++++.+|.||+|..+|+.||.+
T Consensus 11 f~~~d~YevLGVer~a~~~eIrkAY~klal~~HPDk~~eed~~ea~~kFq~l~k~y~iLsDeekR~~YDet 81 (264)
T KOG0719|consen 11 FNKKDLYEVLGVERDATDKEIRKAYHKLALRLHPDKNHEEDKVEATEKFQQLQKAYQILSDEEKRAVYDET 81 (264)
T ss_pred ccccCHHHHhhhcccCCHHHHHHHHHHHHHHhCCCcchhhhHHHHHHHHHHHHHHHHHhhHHHHHHHHhcc
Confidence 345699999999999999999999999999999999963 45899999999999999999999964
No 45
>KOG0721 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.70 E-value=2.2e-17 Score=115.04 Aligned_cols=63 Identities=35% Similarity=0.547 Sum_probs=58.0
Q ss_pred CccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCC----ChHHHHHHHHHHHHhCChhHHHHhhc
Q 040219 36 TGGSLYEVLRIEPTTMISEIKTVYRSLVKVYHPDLSG----NGRDFTKIHNAYETLSDPKARVVYDM 98 (100)
Q Consensus 36 ~~~~~y~iLgv~~~a~~~eIk~ayr~l~~~~hPD~~~----~~~~~~~i~~Ay~~L~dp~~R~~Yd~ 98 (100)
..-|+||||||+++++..|||++||+|++++|||+.+ +++.+..|.+||+.|+|+..|+.|..
T Consensus 97 ~~fDPyEILGl~pgas~~eIKkaYR~LSik~HPDK~~~~~~~e~~~~~I~KAY~aLTD~~sreN~ek 163 (230)
T KOG0721|consen 97 QKFDPYEILGLDPGASEKEIKKAYRRLSIKYHPDKQPPEEGDEEFFEAIAKAYQALTDKKSRENWEK 163 (230)
T ss_pred hcCCcHHhhCCCCCCCHHHHHHHHHHhhhhhCCCcCCCcchhHHHHHHHHHHHHHhcchhhHHHHHH
Confidence 4579999999999999999999999999999999954 46689999999999999999999975
No 46
>PRK05014 hscB co-chaperone HscB; Provisional
Probab=99.70 E-value=4.5e-17 Score=110.88 Aligned_cols=62 Identities=24% Similarity=0.425 Sum_probs=55.3
Q ss_pred cCcccccccCCC--CCHHHHHHHHHHHHHHhCCCCCCC---------hHHHHHHHHHHHHhCChhHHHHhhcc
Q 040219 38 GSLYEVLRIEPT--TMISEIKTVYRSLVKVYHPDLSGN---------GRDFTKIHNAYETLSDPKARVVYDMS 99 (100)
Q Consensus 38 ~~~y~iLgv~~~--a~~~eIk~ayr~l~~~~hPD~~~~---------~~~~~~i~~Ay~~L~dp~~R~~Yd~~ 99 (100)
.|||+||||+++ ++..+|+++|+++++++|||+..+ .+.+..|++||++|+||.+|+.|+..
T Consensus 1 ~~yf~llgl~~~~~~d~~~L~~~yr~l~~~~HPDk~~~~~~~~~~~a~~~s~~iN~AY~~L~dp~~Ra~Yll~ 73 (171)
T PRK05014 1 MDYFTLFGLPARYDIDTQLLASRYQELQRQFHPDKFANASERERLLAVQQAATINDAYQTLKHPLKRAEYLLS 73 (171)
T ss_pred CCHHHHCCCCCCCCCCHHHHHHHHHHHHHHhCcCCCCCCcHHHHHHHHHHHHHHHHHHHHHCChhHHHHHHHH
Confidence 489999999996 688999999999999999999764 23688999999999999999999854
No 47
>PRK01356 hscB co-chaperone HscB; Provisional
Probab=99.70 E-value=5.2e-17 Score=110.10 Aligned_cols=63 Identities=24% Similarity=0.373 Sum_probs=55.9
Q ss_pred cCcccccccCCC--CCHHHHHHHHHHHHHHhCCCCCCCh-------HHHHHHHHHHHHhCChhHHHHhhccC
Q 040219 38 GSLYEVLRIEPT--TMISEIKTVYRSLVKVYHPDLSGNG-------RDFTKIHNAYETLSDPKARVVYDMSL 100 (100)
Q Consensus 38 ~~~y~iLgv~~~--a~~~eIk~ayr~l~~~~hPD~~~~~-------~~~~~i~~Ay~~L~dp~~R~~Yd~~l 100 (100)
.|||+||||+++ ++..+|+++|+++.+++|||+..+. +.+..|++||+||+||.+|+.|+..|
T Consensus 2 ~~yf~llgl~~~f~id~~~L~~aYr~lq~~~HPDk~~~~~~k~~~~~~s~~in~AY~~L~dp~~Ra~YlL~l 73 (166)
T PRK01356 2 QNYFQLLGLPQEYNIDLKILEKQYFAMQVKYHPDKAKTLQEKEQNLIIASELNNAYSTLKDALKRAEYMLLL 73 (166)
T ss_pred CCHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCCCHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHc
Confidence 589999999987 6899999999999999999998752 24679999999999999999997643
No 48
>COG2214 CbpA DnaJ-class molecular chaperone [Posttranslational modification, protein turnover, chaperones]
Probab=99.67 E-value=1.1e-16 Score=109.06 Aligned_cols=63 Identities=41% Similarity=0.690 Sum_probs=59.0
Q ss_pred CccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCCC-----hHHHHHHHHHHHHhCChhHHHHhhc
Q 040219 36 TGGSLYEVLRIEPTTMISEIKTVYRSLVKVYHPDLSGN-----GRDFTKIHNAYETLSDPKARVVYDM 98 (100)
Q Consensus 36 ~~~~~y~iLgv~~~a~~~eIk~ayr~l~~~~hPD~~~~-----~~~~~~i~~Ay~~L~dp~~R~~Yd~ 98 (100)
...+||+||||+++++..||+++|+++++++|||+++. .+.|..|++||++|+|+..|..||.
T Consensus 4 ~~~~~y~iLgv~~~as~~eik~ayrkla~~~HPD~~~~~~~~a~~~f~~i~~Ay~vLsd~~~r~~yd~ 71 (237)
T COG2214 4 DLLDYYEILGVPPNASLEEIKKAYRKLALKYHPDRNPGDPKVAEEKFKEINEAYEILSDPERRAEYDK 71 (237)
T ss_pred hhhhHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchhHHHHHHHHHHHHHHHhhCHHHHHHhhh
Confidence 35799999999999999999999999999999999885 3789999999999999999999996
No 49
>PRK00294 hscB co-chaperone HscB; Provisional
Probab=99.66 E-value=2.5e-16 Score=107.38 Aligned_cols=64 Identities=23% Similarity=0.455 Sum_probs=57.2
Q ss_pred CccCcccccccCCC--CCHHHHHHHHHHHHHHhCCCCCCC---------hHHHHHHHHHHHHhCChhHHHHhhcc
Q 040219 36 TGGSLYEVLRIEPT--TMISEIKTVYRSLVKVYHPDLSGN---------GRDFTKIHNAYETLSDPKARVVYDMS 99 (100)
Q Consensus 36 ~~~~~y~iLgv~~~--a~~~eIk~ayr~l~~~~hPD~~~~---------~~~~~~i~~Ay~~L~dp~~R~~Yd~~ 99 (100)
+..|||++|||++. .+..+|+++|+++++++|||+..+ .+.+..||+||++|+||.+|+.|+..
T Consensus 2 ~~~~~F~l~~l~~~f~id~~~L~~~Yr~Lq~~~HPDk~~~~~~~e~~~a~~~s~~IN~AY~~L~~p~~Ra~YlL~ 76 (173)
T PRK00294 2 GTPCHFALFDLQPSFRLDLDQLATRYRELAREVHPDRFADAPEREQRLALERSASLNEAYQTLKSPPRRARYLLA 76 (173)
T ss_pred CCCChhhhcCcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCcHHHHHHHHHHHHHHHHHHHHhCChhhhHHHHHH
Confidence 45899999999998 578999999999999999999764 23689999999999999999999864
No 50
>TIGR03835 termin_org_DnaJ terminal organelle assembly protein TopJ. This model describes TopJ (MG_200, CbpA), a DnaJ homolog and probable assembly protein of the Mycoplasma terminal organelle. The terminal organelle is involved in both cytadherence and gliding motility.
Probab=99.66 E-value=1.8e-16 Score=126.10 Aligned_cols=62 Identities=40% Similarity=0.612 Sum_probs=58.0
Q ss_pred cCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCCC---hHHHHHHHHHHHHhCChhHHHHhhcc
Q 040219 38 GSLYEVLRIEPTTMISEIKTVYRSLVKVYHPDLSGN---GRDFTKIHNAYETLSDPKARVVYDMS 99 (100)
Q Consensus 38 ~~~y~iLgv~~~a~~~eIk~ayr~l~~~~hPD~~~~---~~~~~~i~~Ay~~L~dp~~R~~Yd~~ 99 (100)
.|||+||||+++++..+||++||++++++|||++++ ...|+.|++||++|+||.+|..||..
T Consensus 2 ~DYYeVLGVs~dAS~eEIKKAYRKLAKKyHPDKn~~~eAeekFqeINEAYEVLSDP~KRa~YD~f 66 (871)
T TIGR03835 2 RDYYEVLGIDRDADEQEIKKAFRKLAKKYHPDRNKAPDAASIFAEINEANDVLSNPKKRANYDKY 66 (871)
T ss_pred CChhHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCChhHHHHHHHHHHHHHHhCCHHHHHHHhhh
Confidence 689999999999999999999999999999999875 35799999999999999999999963
No 51
>PRK03578 hscB co-chaperone HscB; Provisional
Probab=99.66 E-value=3.1e-16 Score=107.18 Aligned_cols=63 Identities=22% Similarity=0.346 Sum_probs=55.6
Q ss_pred ccCcccccccCCC--CCHHHHHHHHHHHHHHhCCCCCCC---------hHHHHHHHHHHHHhCChhHHHHhhcc
Q 040219 37 GGSLYEVLRIEPT--TMISEIKTVYRSLVKVYHPDLSGN---------GRDFTKIHNAYETLSDPKARVVYDMS 99 (100)
Q Consensus 37 ~~~~y~iLgv~~~--a~~~eIk~ayr~l~~~~hPD~~~~---------~~~~~~i~~Ay~~L~dp~~R~~Yd~~ 99 (100)
..|||+||||+++ ++..+|+++|+++++++|||++++ .+.+..||+||++|+||.+|+.|+..
T Consensus 5 ~~dyf~llglp~~f~~d~~~L~~~yr~lq~~~HPD~~~~~~~~e~~~a~~~s~~iN~AY~tL~~p~~Ra~Yll~ 78 (176)
T PRK03578 5 KDDHFSLFGLPARFALDEAALDAAYRTVQAQVHPDRFAAAGDAEKRVAMQWATRANEAYQTLRDPLKRARYLLH 78 (176)
T ss_pred CCCHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCCHHHHHHHHHHHHHHHHHHHHhCChhhHHHHHHH
Confidence 3799999999986 589999999999999999999764 22468999999999999999999854
No 52
>PTZ00100 DnaJ chaperone protein; Provisional
Probab=99.62 E-value=9.6e-16 Score=98.24 Aligned_cols=53 Identities=26% Similarity=0.400 Sum_probs=50.3
Q ss_pred CccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHhC
Q 040219 36 TGGSLYEVLRIEPTTMISEIKTVYRSLVKVYHPDLSGNGRDFTKIHNAYETLS 88 (100)
Q Consensus 36 ~~~~~y~iLgv~~~a~~~eIk~ayr~l~~~~hPD~~~~~~~~~~i~~Ay~~L~ 88 (100)
...++|+||||+++++.+||+++||++++++|||++++.+.+.+|++||++|.
T Consensus 63 s~~eAy~ILGv~~~As~~eIkkaYRrLa~~~HPDkgGs~~~~~kIneAyevL~ 115 (116)
T PTZ00100 63 SKSEAYKILNISPTASKERIREAHKQLMLRNHPDNGGSTYIASKVNEAKDLLL 115 (116)
T ss_pred CHHHHHHHcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHh
Confidence 45799999999999999999999999999999999988999999999999985
No 53
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.59 E-value=1.2e-15 Score=113.46 Aligned_cols=65 Identities=31% Similarity=0.503 Sum_probs=60.1
Q ss_pred CCCccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCCChH-------HHHHHHHHHHHhCChhHHHHhhc
Q 040219 34 PGTGGSLYEVLRIEPTTMISEIKTVYRSLVKVYHPDLSGNGR-------DFTKIHNAYETLSDPKARVVYDM 98 (100)
Q Consensus 34 ~~~~~~~y~iLgv~~~a~~~eIk~ayr~l~~~~hPD~~~~~~-------~~~~i~~Ay~~L~dp~~R~~Yd~ 98 (100)
....+|||+||||.++|+..||.+|||+++.+||||...+++ +|..|..|-+||+||++|..||.
T Consensus 390 qs~kRDYYKILGVkRnAsKqEI~KAYRKlAqkWHPDNFqdEeEKKkAEKKFIDIAAAKEVLsd~EkRrqFDn 461 (504)
T KOG0624|consen 390 QSGKRDYYKILGVKRNASKQEITKAYRKLAQKWHPDNFQDEEEKKKAEKKFIDIAAAKEVLSDPEKRRQFDN 461 (504)
T ss_pred HhccchHHHHhhhcccccHHHHHHHHHHHHHhcCCccccCHHHHHHHHHhhhhHHHHHHhhcCHHHHhhccC
Confidence 346799999999999999999999999999999999988743 69999999999999999999996
No 54
>KOG0720 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.58 E-value=1.8e-15 Score=114.61 Aligned_cols=65 Identities=26% Similarity=0.395 Sum_probs=61.2
Q ss_pred CccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCCC---hHHHHHHHHHHHHhCChhHHHHhhccC
Q 040219 36 TGGSLYEVLRIEPTTMISEIKTVYRSLVKVYHPDLSGN---GRDFTKIHNAYETLSDPKARVVYDMSL 100 (100)
Q Consensus 36 ~~~~~y~iLgv~~~a~~~eIk~ayr~l~~~~hPD~~~~---~~~~~~i~~Ay~~L~dp~~R~~Yd~~l 100 (100)
...|+|.+|||+.+++.++||+.||+++...||||+.. +|.|+.++.||++|+|+.+|..||.++
T Consensus 233 ~~~daYsvlGl~~d~sd~~lKk~Yrk~A~LVhPDKn~~~~A~Eafk~Lq~Afevig~~~kR~eYd~e~ 300 (490)
T KOG0720|consen 233 NILDAYSALGLPSDCSDADLKKNYRKKAMLVHPDKNMIPRAEEAFKKLQVAFEVIGDSVKRKEYDLEL 300 (490)
T ss_pred cCCCchhhcCCCCCCCHHHHHHHHHhhceEeCCCccCChhHHHHHHHHHHHHHHhcchhhhhHHHHHH
Confidence 37999999999999999999999999999999999874 789999999999999999999999764
No 55
>PHA02624 large T antigen; Provisional
Probab=99.52 E-value=1.4e-14 Score=113.73 Aligned_cols=61 Identities=18% Similarity=0.383 Sum_probs=58.4
Q ss_pred CccCcccccccCCCC--CHHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHhCChhHHHHh
Q 040219 36 TGGSLYEVLRIEPTT--MISEIKTVYRSLVKVYHPDLSGNGRDFTKIHNAYETLSDPKARVVY 96 (100)
Q Consensus 36 ~~~~~y~iLgv~~~a--~~~eIk~ayr~l~~~~hPD~~~~~~~~~~i~~Ay~~L~dp~~R~~Y 96 (100)
...++|++|||++++ +.++||+|||++++++|||++++.+.|++|++||++|+|+.++..|
T Consensus 9 e~~elyelLGL~~~A~gs~~eIKkAYRkLAkkyHPDKgGdeekfk~Ln~AYevL~d~~k~~r~ 71 (647)
T PHA02624 9 ESKELMDLLGLPMAAWGNLPLMRKAYLRKCKEYHPDKGGDEEKMKRLNSLYKKLQEGVKSARQ 71 (647)
T ss_pred HHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCCcHHHHHHHHHHHHHHhcHHHhhhc
Confidence 357899999999999 9999999999999999999999999999999999999999999998
No 56
>KOG0722 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.52 E-value=6.4e-15 Score=105.28 Aligned_cols=65 Identities=35% Similarity=0.541 Sum_probs=60.2
Q ss_pred CCccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCCC---hHHHHHHHHHHHHhCChhHHHHhhcc
Q 040219 35 GTGGSLYEVLRIEPTTMISEIKTVYRSLVKVYHPDLSGN---GRDFTKIHNAYETLSDPKARVVYDMS 99 (100)
Q Consensus 35 ~~~~~~y~iLgv~~~a~~~eIk~ayr~l~~~~hPD~~~~---~~~~~~i~~Ay~~L~dp~~R~~Yd~~ 99 (100)
++..|+|+||||.+.++..||.+|||+|++++|||++.+ .+.|..|..||++|.|.+.|..||-.
T Consensus 30 CG~enCYdVLgV~Rea~KseIakAYRqLARrhHPDr~r~~e~k~~F~~iAtayeilkd~e~rt~ydya 97 (329)
T KOG0722|consen 30 CGAENCYDVLGVAREANKSEIAKAYRQLARRHHPDRNRDPESKKLFVKIATAYEILKDNETRTQYDYA 97 (329)
T ss_pred ccchhHHHHhhhhhhccHHHHHHHHHHHHHHhCCcccCCchhhhhhhhhhcccccccchhhHHhHHHH
Confidence 467899999999999999999999999999999999886 45799999999999999999999853
No 57
>PRK01773 hscB co-chaperone HscB; Provisional
Probab=99.49 E-value=8.3e-14 Score=95.00 Aligned_cols=62 Identities=19% Similarity=0.267 Sum_probs=55.5
Q ss_pred cCcccccccCCC--CCHHHHHHHHHHHHHHhCCCCCCC---------hHHHHHHHHHHHHhCChhHHHHhhcc
Q 040219 38 GSLYEVLRIEPT--TMISEIKTVYRSLVKVYHPDLSGN---------GRDFTKIHNAYETLSDPKARVVYDMS 99 (100)
Q Consensus 38 ~~~y~iLgv~~~--a~~~eIk~ayr~l~~~~hPD~~~~---------~~~~~~i~~Ay~~L~dp~~R~~Yd~~ 99 (100)
.|||++|||++. .+...+++.|+++.+.+|||+..+ .+....||+||.+|+||.+|+.|-..
T Consensus 2 ~nyF~lf~lp~~F~iD~~~L~~~y~~Lq~~~HPD~f~~~~~~eq~~a~~~ss~iN~AY~tLkdPl~RA~YLL~ 74 (173)
T PRK01773 2 NNPFALFDLPVDFQLDNALLSERYLALQKSLHPDNFANSSAQEQRLAMQKSAEVNDALQILKDPILRAEAIIA 74 (173)
T ss_pred CChHHhcCCCCCCCCCHHHHHHHHHHHHHHhCcCcccCCCHHHHHHHHHHHHHHHHHHHHHCChHHHHHHHHH
Confidence 689999999987 799999999999999999999764 23578999999999999999999654
No 58
>PRK09430 djlA Dna-J like membrane chaperone protein; Provisional
Probab=99.45 E-value=1e-13 Score=100.11 Aligned_cols=54 Identities=31% Similarity=0.400 Sum_probs=48.7
Q ss_pred CccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCCC-----------hHHHHHHHHHHHHhCC
Q 040219 36 TGGSLYEVLRIEPTTMISEIKTVYRSLVKVYHPDLSGN-----------GRDFTKIHNAYETLSD 89 (100)
Q Consensus 36 ~~~~~y~iLgv~~~a~~~eIk~ayr~l~~~~hPD~~~~-----------~~~~~~i~~Ay~~L~d 89 (100)
...++|+||||++++|.++||++||+++++||||+..+ .++|++|++||++|+.
T Consensus 198 ~~~~ay~vLgv~~~as~~eIk~aYr~L~~~~HPDk~~~~g~~~~~~~~a~ek~~~I~~AYe~L~~ 262 (267)
T PRK09430 198 TLEDAYKVLGVSESDDDQEIKRAYRKLMSEHHPDKLVAKGLPPEMMEMAKEKAQEIQAAYELIKK 262 (267)
T ss_pred cHHhHHHHcCCCCCCCHHHHHHHHHHHHHHhCcCCCCCCCCChhhHHHHHHHHHHHHHHHHHHHH
Confidence 45899999999999999999999999999999999632 3689999999999974
No 59
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.43 E-value=1.1e-13 Score=104.41 Aligned_cols=65 Identities=35% Similarity=0.560 Sum_probs=59.9
Q ss_pred CCCccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCCCh-----HHHHHHHHHHHHhCChhHHHHhhc
Q 040219 34 PGTGGSLYEVLRIEPTTMISEIKTVYRSLVKVYHPDLSGNG-----RDFTKIHNAYETLSDPKARVVYDM 98 (100)
Q Consensus 34 ~~~~~~~y~iLgv~~~a~~~eIk~ayr~l~~~~hPD~~~~~-----~~~~~i~~Ay~~L~dp~~R~~Yd~ 98 (100)
.++..+||.||||..+++..||+++||++++.+|||++.+. ..|+++.+||.+|+||.+|.+||.
T Consensus 369 kSkRkd~ykilGi~~~as~~eikkayrk~AL~~Hpd~~agsq~eaE~kFkevgeAy~il~d~~kr~r~ds 438 (486)
T KOG0550|consen 369 KSKRKDWYKILGISRNASDDEIKKAYRKLALVHHPDKNAGSQKEAEAKFKEVGEAYTILSDPMKRVRFDS 438 (486)
T ss_pred HhhhhhHHHHhhhhhhcccchhhhHHHHHHHHhCCCcCcchhHHHHHHHHHHHHHHHHhcCHHHHhhccc
Confidence 34578999999999999999999999999999999998863 379999999999999999999985
No 60
>KOG0714 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.39 E-value=3.5e-13 Score=95.59 Aligned_cols=63 Identities=41% Similarity=0.694 Sum_probs=57.3
Q ss_pred ccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCCCh-----HHHHHHHHHHHHhCChhHHHHhhcc
Q 040219 37 GGSLYEVLRIEPTTMISEIKTVYRSLVKVYHPDLSGNG-----RDFTKIHNAYETLSDPKARVVYDMS 99 (100)
Q Consensus 37 ~~~~y~iLgv~~~a~~~eIk~ayr~l~~~~hPD~~~~~-----~~~~~i~~Ay~~L~dp~~R~~Yd~~ 99 (100)
..++|+||||.++++..+|++||+++++.+|||+++.. .+|.+|.+||++|+|+.+|..||+.
T Consensus 2 ~~d~~~~l~i~~~as~~~i~ka~~~~a~~~hpdk~~~~~~~~~~~~~~~~ea~~~ls~~~kr~~~d~~ 69 (306)
T KOG0714|consen 2 GKDYYKILGIARSASEEDIKKAYRKLALKYHPDKNPSPKEVAEAKFKEIAEAYEVLSDPKKRKIYDQY 69 (306)
T ss_pred cccHHHHhCccccccHHHHHHHHHHHHHhhCCCCCCCchhhHHHHHhhhhccccccCCHHHhhhcccc
Confidence 46899999999999999999999999999999997754 3588999999999999999999974
No 61
>COG5407 SEC63 Preprotein translocase subunit Sec63 [Intracellular trafficking and secretion]
Probab=99.33 E-value=1.4e-12 Score=99.37 Aligned_cols=62 Identities=35% Similarity=0.501 Sum_probs=57.6
Q ss_pred ccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCCC---------hHHHHHHHHHHHHhCChhHHHHhhc
Q 040219 37 GGSLYEVLRIEPTTMISEIKTVYRSLVKVYHPDLSGN---------GRDFTKIHNAYETLSDPKARVVYDM 98 (100)
Q Consensus 37 ~~~~y~iLgv~~~a~~~eIk~ayr~l~~~~hPD~~~~---------~~~~~~i~~Ay~~L~dp~~R~~Yd~ 98 (100)
.-|+||||||..+++..+||++||+|+.++|||+.+. ++.+.+|++||..|+|...|+.|-.
T Consensus 97 ~fDPyEILGI~~~ts~rdik~~yr~Ls~KfhpdK~~~mvn~~rse~Ee~y~~ItkAY~~lTd~k~renyl~ 167 (610)
T COG5407 97 GFDPYEILGIDQDTSERDIKKRYRMLSMKFHPDKAPPMVNELRSEYEEKYKTITKAYGLLTDKKRRENYLN 167 (610)
T ss_pred CCChHHhhcccCCCcHHHHHHHHHhheeecChhhcCCCChhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHh
Confidence 4689999999999999999999999999999999876 5679999999999999999999864
No 62
>TIGR00714 hscB Fe-S protein assembly co-chaperone HscB. This model describes the small subunit, Hsc20 (20K heat shock cognate protein) of a pair of proteins Hsc66-Hsc20, related to the DnaK-DnaJ heat shock proteins, which also serve as molecular chaperones. Hsc20, unlike DnaJ, appears not to have chaperone activity on its own, but to act solely as a regulatory subunit for Hsc66 (i.e., to be a co-chaperone). The gene for Hsc20 in E. coli, hscB, is not induced by heat shock.
Probab=99.29 E-value=7.7e-12 Score=84.14 Aligned_cols=51 Identities=33% Similarity=0.519 Sum_probs=44.7
Q ss_pred CCHHHHHHHHHHHHHHhCCCCCCC---------hHHHHHHHHHHHHhCChhHHHHhhccC
Q 040219 50 TMISEIKTVYRSLVKVYHPDLSGN---------GRDFTKIHNAYETLSDPKARVVYDMSL 100 (100)
Q Consensus 50 a~~~eIk~ayr~l~~~~hPD~~~~---------~~~~~~i~~Ay~~L~dp~~R~~Yd~~l 100 (100)
.+..+|+++|+++++++|||+.++ .+.+..||+||++|+||.+|+.|+..|
T Consensus 3 iD~~~L~~~yr~lq~~~HPD~~~~~~~~~~~~a~~~s~~iN~AY~~L~~p~~Ra~ylL~l 62 (157)
T TIGR00714 3 LDTQALSLRYQDLQRQYHPDKFASGSAQEQLAAVQQSTTLNQAYQTLKDPLMRAEYMLSL 62 (157)
T ss_pred CCHHHHHHHHHHHHHHHCcCCCCCCChhhhHHHHHHHHHHHHHHHHhCChhhhHHHHHHh
Confidence 478899999999999999998653 246899999999999999999998653
No 63
>COG5269 ZUO1 Ribosome-associated chaperone zuotin [Translation, ribosomal structure and biogenesis / Posttranslational modification, protein turnover, chaperones]
Probab=99.08 E-value=1.3e-10 Score=84.21 Aligned_cols=65 Identities=29% Similarity=0.385 Sum_probs=57.7
Q ss_pred CCCccCcccccccCC---CCCHHHHHHHHHHHHHHhCCCCCC------ChHHHHHHHHHHHHhCChhHHHHhhc
Q 040219 34 PGTGGSLYEVLRIEP---TTMISEIKTVYRSLVKVYHPDLSG------NGRDFTKIHNAYETLSDPKARVVYDM 98 (100)
Q Consensus 34 ~~~~~~~y~iLgv~~---~a~~~eIk~ayr~l~~~~hPD~~~------~~~~~~~i~~Ay~~L~dp~~R~~Yd~ 98 (100)
.++..|+|.+|||+. .++..+|.++.++.+.+||||+.. ..+.|..|+.||++|+|+..|.+||-
T Consensus 39 ~Wk~~DlYa~lgLskyR~ka~~~qi~kah~kkv~kyHPDk~aa~g~~~~d~fFk~iqkA~evL~D~~~R~qyDS 112 (379)
T COG5269 39 NWKKVDLYALLGLSKYRTKAIPPQILKAHKKKVYKYHPDKTAAGGNKGCDEFFKLIQKAREVLGDRKLRLQYDS 112 (379)
T ss_pred hhhhhhHHHHhchHhhhcCCCcHHHHHHHHHHHHHhCccchhccCCCCcHHHHHHHHHHHHHhccHHHHhhccc
Confidence 446699999999975 588999999999999999999963 26789999999999999999999983
No 64
>KOG1150 consensus Predicted molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.04 E-value=3.7e-10 Score=78.52 Aligned_cols=60 Identities=32% Similarity=0.506 Sum_probs=54.1
Q ss_pred CccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCCCh-----HHHHHHHHHHHHhCChhHHHH
Q 040219 36 TGGSLYEVLRIEPTTMISEIKTVYRSLVKVYHPDLSGNG-----RDFTKIHNAYETLSDPKARVV 95 (100)
Q Consensus 36 ~~~~~y~iLgv~~~a~~~eIk~ayr~l~~~~hPD~~~~~-----~~~~~i~~Ay~~L~dp~~R~~ 95 (100)
-+-|+|+||.|.|..+.++||+.||+++...|||+++++ ..|.-+.+||..|-|+..|..
T Consensus 51 fnLNpfeVLqIdpev~~edikkryRklSilVHPDKN~Dd~~rAqkAFdivkKA~k~l~n~~~rkr 115 (250)
T KOG1150|consen 51 FNLNPFEVLQIDPEVTDEDIKKRYRKLSILVHPDKNPDDAERAQKAFDIVKKAYKLLENDKIRKR 115 (250)
T ss_pred cccChHHHHhcCCCCCHHHHHHHHHhhheeecCCCCcccHHHHHHHHHHHHHHHHHHhCHHHHHH
Confidence 357999999999999999999999999999999999974 468999999999999986654
No 65
>KOG0723 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.92 E-value=2.9e-09 Score=67.05 Aligned_cols=54 Identities=24% Similarity=0.293 Sum_probs=49.7
Q ss_pred ccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHhCCh
Q 040219 37 GGSLYEVLRIEPTTMISEIKTVYRSLVKVYHPDLSGNGRDFTKIHNAYETLSDP 90 (100)
Q Consensus 37 ~~~~y~iLgv~~~a~~~eIk~ayr~l~~~~hPD~~~~~~~~~~i~~Ay~~L~dp 90 (100)
.+..-.||||.+.++.+.||.++|+++...|||++++......||+|+++|...
T Consensus 55 r~EA~lIL~v~~s~~k~KikeaHrriM~~NHPD~GGSPYlAsKINEAKdlLe~~ 108 (112)
T KOG0723|consen 55 RREAALILGVTPSLDKDKIKEAHRRIMLANHPDRGGSPYLASKINEAKDLLEGT 108 (112)
T ss_pred hHHHHHHhCCCccccHHHHHHHHHHHHHcCCCcCCCCHHHHHHHHHHHHHHhcc
Confidence 356677999999999999999999999999999999999999999999999753
No 66
>KOG0568 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.72 E-value=1.5e-08 Score=72.17 Aligned_cols=54 Identities=22% Similarity=0.437 Sum_probs=48.2
Q ss_pred CccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCCC---hHHHHHHHHHHH-HhCC
Q 040219 36 TGGSLYEVLRIEPTTMISEIKTVYRSLVKVYHPDLSGN---GRDFTKIHNAYE-TLSD 89 (100)
Q Consensus 36 ~~~~~y~iLgv~~~a~~~eIk~ayr~l~~~~hPD~~~~---~~~~~~i~~Ay~-~L~d 89 (100)
.-..+|.||||+.+|+.++++.+|..+++++|||.+.+ .+.|.+|.+||. +|+.
T Consensus 45 ~~~e~fril~v~e~~~adevr~af~~lakq~hpdsgs~~adaa~f~qideafrkvlq~ 102 (342)
T KOG0568|consen 45 KIMECFRILGVEEGADADEVREAFHDLAKQVHPDSGSEEADAARFIQIDEAFRKVLQE 102 (342)
T ss_pred HHHHHHHHhcccccCchhHHHHHHHHHHHHcCCCCCCccccHHHHHHHHHHHHHHHHH
Confidence 35679999999999999999999999999999998775 568999999998 6653
No 67
>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]
Probab=98.49 E-value=1.8e-07 Score=77.87 Aligned_cols=52 Identities=31% Similarity=0.473 Sum_probs=45.7
Q ss_pred ccCcccccccCCC----CCHHHHHHHHHHHHHHhCCCCCCC-hHHHHHHHHHHHHhC
Q 040219 37 GGSLYEVLRIEPT----TMISEIKTVYRSLVKVYHPDLSGN-GRDFTKIHNAYETLS 88 (100)
Q Consensus 37 ~~~~y~iLgv~~~----a~~~eIk~ayr~l~~~~hPD~~~~-~~~~~~i~~Ay~~L~ 88 (100)
.-+.|+||.|+-+ ...++||++|++++.+|||||++. -+.|..+++||+.|.
T Consensus 1280 ~d~A~eiL~i~l~n~~hD~~~KirrqY~kLA~kYHPDKNPEGRemFe~VnKAYE~L~ 1336 (2235)
T KOG1789|consen 1280 VDLAREILSVDLTNEEHDKPAKIRRQYYKLAAKYHPDKNPEGREMFERVNKAYELLS 1336 (2235)
T ss_pred hHHHHHHhccccCCCCcccHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHHH
Confidence 3568999999765 345889999999999999999996 679999999999997
No 68
>KOG3192 consensus Mitochondrial J-type chaperone [Posttranslational modification, protein turnover, chaperones]
Probab=98.32 E-value=7.9e-07 Score=59.64 Aligned_cols=63 Identities=27% Similarity=0.517 Sum_probs=52.6
Q ss_pred CccCcccccccCCC--CCHHHHHHHHHHHHHHhCCCCCCC---------hHHHHHHHHHHHHhCChhHHHHhhc
Q 040219 36 TGGSLYEVLRIEPT--TMISEIKTVYRSLVKVYHPDLSGN---------GRDFTKIHNAYETLSDPKARVVYDM 98 (100)
Q Consensus 36 ~~~~~y~iLgv~~~--a~~~eIk~ayr~l~~~~hPD~~~~---------~~~~~~i~~Ay~~L~dp~~R~~Yd~ 98 (100)
...+||.+||.... .++..++.-|....+++|||+.+. .+...++++||.+|.||-+|+.|-.
T Consensus 6 ~~~~ff~~Fg~e~~~~~~p~~l~~~~~~~skkL~~d~~~~~~~~~~d~a~eqSa~lnkAY~TLk~pL~RA~Yil 79 (168)
T KOG3192|consen 6 SPSRFFDIFGMELSFKIDPDKLKEKYTDISKKLHPDRPGLSFAGDTDQASEQSAELNKAYDTLKDPLARARYLL 79 (168)
T ss_pred hHHHHHHHhccccCCCCCcchhhHHHHHHHHhhCcccccccccccchhHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 35789999987554 567777779999999999998542 5679999999999999999999964
No 69
>PF03656 Pam16: Pam16; InterPro: IPR005341 The Pam16 protein is the fifth essential subunit of the pre-sequence translocase-associated protein import motor (PAM) []. In Saccharomyces cerevisiae (Baker's yeast), Pam16 is required for preprotein translocation into the matrix, but not for protein insertion into the inner membrane [].; PDB: 2GUZ_J.
Probab=97.54 E-value=0.00023 Score=46.47 Aligned_cols=54 Identities=22% Similarity=0.271 Sum_probs=42.4
Q ss_pred cCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHhCChh
Q 040219 38 GSLYEVLRIEPTTMISEIKTVYRSLVKVYHPDLSGNGRDFTKIHNAYETLSDPK 91 (100)
Q Consensus 38 ~~~y~iLgv~~~a~~~eIk~ayr~l~~~~hPD~~~~~~~~~~i~~Ay~~L~dp~ 91 (100)
..-.+||||++..+.++|.+.|..|....+|+++++...-..|..|.+.|....
T Consensus 58 ~EA~~ILnv~~~~~~eeI~k~y~~Lf~~Nd~~kGGSfYLQSKV~rAKErl~~El 111 (127)
T PF03656_consen 58 DEARQILNVKEELSREEIQKRYKHLFKANDPSKGGSFYLQSKVFRAKERLEQEL 111 (127)
T ss_dssp HHHHHHHT--G--SHHHHHHHHHHHHHHT-CCCTS-HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCCCccCHHHHHHHHHHHHhccCCCcCCCHHHHHHHHHHHHHHHHHH
Confidence 466899999999999999999999999999999999888888889988886443
No 70
>COG1076 DjlA DnaJ-domain-containing proteins 1 [Posttranslational modification, protein turnover, chaperones]
Probab=97.47 E-value=6.3e-05 Score=51.23 Aligned_cols=50 Identities=30% Similarity=0.481 Sum_probs=43.4
Q ss_pred cCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCCC-----------hHHHHHHHHHHHHh
Q 040219 38 GSLYEVLRIEPTTMISEIKTVYRSLVKVYHPDLSGN-----------GRDFTKIHNAYETL 87 (100)
Q Consensus 38 ~~~y~iLgv~~~a~~~eIk~ayr~l~~~~hPD~~~~-----------~~~~~~i~~Ay~~L 87 (100)
.+.|.+||+....+..+|+++|+++....|||+-.+ .+++++|++||+.+
T Consensus 113 ~~~l~~l~~~~~~~~~~i~~~~r~l~~e~~~d~a~~~~~~~e~~~~~~~~~~~i~~a~~~~ 173 (174)
T COG1076 113 EDALKVLGVEIKADQDAIKKAYRKLLSEQHPDKAAAKGLKLEFIEKLKEKLQEIQEAYEDI 173 (174)
T ss_pred hhHHHHhcCchhhhHHHHHHHHHHHHHhcCHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhc
Confidence 688999999999999999999999999999998543 45688888888753
No 71
>COG1076 DjlA DnaJ-domain-containing proteins 1 [Posttranslational modification, protein turnover, chaperones]
Probab=97.29 E-value=0.00019 Score=48.83 Aligned_cols=60 Identities=28% Similarity=0.497 Sum_probs=48.9
Q ss_pred CcccccccCCCC--CHHHHHHHHHHHHHHhCCCCCCC---------hHHHHHHHHHHHHhCChhHHHHhhc
Q 040219 39 SLYEVLRIEPTT--MISEIKTVYRSLVKVYHPDLSGN---------GRDFTKIHNAYETLSDPKARVVYDM 98 (100)
Q Consensus 39 ~~y~iLgv~~~a--~~~eIk~ayr~l~~~~hPD~~~~---------~~~~~~i~~Ay~~L~dp~~R~~Yd~ 98 (100)
+++..+|..+.+ ..+.++..|+.+.+.+|||+... -+.+..++.||.+|.||..|+.|-.
T Consensus 2 ~~~~~~~~~~~f~~~~~~l~~~~~~~~~~~~~dr~~~~~~~~~~~~l~~~~~~~~a~~tLk~~l~ra~~~l 72 (174)
T COG1076 2 DGFVLFGLPRAFQIDLDALKLQYRELQRAYHPDRFGKASEAEQRKALQQSAEVNPAYQTLKDPLLRAEYLL 72 (174)
T ss_pred CcccccccHHHHHHHHhHhhhhHHHHHHhhCcccccccchHHHHHHHHHHHHhcchHHHHHHHHHHHHHHH
Confidence 456667776654 56678999999999999999774 2367889999999999999999964
No 72
>KOG0431 consensus Auxilin-like protein and related proteins containing DnaJ domain [General function prediction only]
Probab=96.95 E-value=0.0011 Score=51.44 Aligned_cols=29 Identities=24% Similarity=0.369 Sum_probs=24.6
Q ss_pred ccCCCCCHHHHHHHHHHHHHHhCCCCCCC
Q 040219 45 RIEPTTMISEIKTVYRSLVKVYHPDLSGN 73 (100)
Q Consensus 45 gv~~~a~~~eIk~ayr~l~~~~hPD~~~~ 73 (100)
++..-.+.++||++||+.++.+||||.+.
T Consensus 395 sltDLVtp~~VKKaYrKA~L~VHPDKlqq 423 (453)
T KOG0431|consen 395 SLTDLVTPAQVKKAYRKAVLCVHPDKLQQ 423 (453)
T ss_pred chhhccCHHHHHHHHHhhhheeCcccccC
Confidence 34445799999999999999999999764
No 73
>PF11833 DUF3353: Protein of unknown function (DUF3353); InterPro: IPR021788 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 205 to 258 amino acids in length.
Probab=94.50 E-value=0.13 Score=35.86 Aligned_cols=38 Identities=21% Similarity=0.412 Sum_probs=32.3
Q ss_pred CCCCCHHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHhC
Q 040219 47 EPTTMISEIKTVYRSLVKVYHPDLSGNGRDFTKIHNAYETLS 88 (100)
Q Consensus 47 ~~~a~~~eIk~ayr~l~~~~hPD~~~~~~~~~~i~~Ay~~L~ 88 (100)
+++|+.+||.+|+.++..+| .++++....|..||+.+.
T Consensus 1 S~~ASfeEIq~Arn~ll~~y----~gd~~~~~~IEaAYD~IL 38 (194)
T PF11833_consen 1 SEDASFEEIQAARNRLLAQY----AGDEKSREAIEAAYDAIL 38 (194)
T ss_pred CCCCCHHHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHHH
Confidence 47899999999999999988 445667889999999864
No 74
>PF13446 RPT: A repeated domain in UCH-protein
Probab=94.41 E-value=0.11 Score=29.31 Aligned_cols=44 Identities=23% Similarity=0.322 Sum_probs=33.3
Q ss_pred cCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHhC
Q 040219 38 GSLYEVLRIEPTTMISEIKTVYRSLVKVYHPDLSGNGRDFTKIHNAYETLS 88 (100)
Q Consensus 38 ~~~y~iLgv~~~a~~~eIk~ayr~l~~~~hPD~~~~~~~~~~i~~Ay~~L~ 88 (100)
.+.|++|||+++.+.+.|-.+|+.... ..| .....+.+|..++.
T Consensus 5 ~~Ay~~Lgi~~~~~Dd~Ii~~f~~~~~-~~P------~~~~~~r~AL~~Ia 48 (62)
T PF13446_consen 5 EEAYEILGIDEDTDDDFIISAFQSKVN-DDP------SQKDTLREALRVIA 48 (62)
T ss_pred HHHHHHhCcCCCCCHHHHHHHHHHHHH-cCh------HhHHHHHHHHHHHH
Confidence 467999999999999999999999888 222 34445566666654
No 75
>KOG3442 consensus Uncharacterized conserved protein [Function unknown]
Probab=90.93 E-value=0.5 Score=30.79 Aligned_cols=50 Identities=22% Similarity=0.228 Sum_probs=38.1
Q ss_pred cCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHh
Q 040219 38 GSLYEVLRIEPTTMISEIKTVYRSLVKVYHPDLSGNGRDFTKIHNAYETL 87 (100)
Q Consensus 38 ~~~y~iLgv~~~a~~~eIk~ayr~l~~~~hPD~~~~~~~~~~i~~Ay~~L 87 (100)
..--+||+|++..+.++|.+.|..|-....+.++++...-..+-.|-+-|
T Consensus 59 qEa~qILnV~~~ln~eei~k~yehLFevNdkskGGSFYLQSKVfRAkErl 108 (132)
T KOG3442|consen 59 QEAQQILNVKEPLNREEIEKRYEHLFEVNDKSKGGSFYLQSKVFRAKERL 108 (132)
T ss_pred HHHhhHhCCCCCCCHHHHHHHHHHHHhccCcccCcceeehHHHHHHHHHH
Confidence 45678999999999999999999999988888888744333344444333
No 76
>KOG0724 consensus Zuotin and related molecular chaperones (DnaJ superfamily), contains DNA-binding domains [Posttranslational modification, protein turnover, chaperones]
Probab=89.58 E-value=0.43 Score=35.29 Aligned_cols=48 Identities=27% Similarity=0.445 Sum_probs=38.6
Q ss_pred CCHHHHHHHHHHHHHHhCCCCCC--------ChHHHHHHHHHHHHhCChhHHHHhh
Q 040219 50 TMISEIKTVYRSLVKVYHPDLSG--------NGRDFTKIHNAYETLSDPKARVVYD 97 (100)
Q Consensus 50 a~~~eIk~ayr~l~~~~hPD~~~--------~~~~~~~i~~Ay~~L~dp~~R~~Yd 97 (100)
++..+|..+|+......||++.. ..+.+..|.+||.+|++...|...|
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~i~ka~~i~~~~~~~~t~~ 59 (335)
T KOG0724|consen 4 ASEDELRLAYREMALKSHPEKKSFYEKLSLWTEEEFKKIEKALAILDDDEPRRTPD 59 (335)
T ss_pred ccHHHHHHHHHHHhhhcCcHHHHHHHHhhhhHHHHHHHHHHHHHHHhccccccchh
Confidence 56788999999999999999873 2567999999999999865544433
No 77
>COG5552 Uncharacterized conserved protein [Function unknown]
Probab=89.15 E-value=2.9 Score=24.96 Aligned_cols=36 Identities=11% Similarity=0.195 Sum_probs=29.4
Q ss_pred ccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCC
Q 040219 37 GGSLYEVLRIEPTTMISEIKTVYRSLVKVYHPDLSG 72 (100)
Q Consensus 37 ~~~~y~iLgv~~~a~~~eIk~ayr~l~~~~hPD~~~ 72 (100)
++|.-+++|+++.++..||+.+-.+.++++.--..+
T Consensus 2 CRNIk~LfnfdPPAT~~EvrdAAlQfVRKlSGtT~P 37 (88)
T COG5552 2 CRNIKELFNFDPPATPVEVRDAALQFVRKLSGTTHP 37 (88)
T ss_pred ccchHHHhCCCCCCCcHHHHHHHHHHHHHhcCCCCc
Confidence 456778999999999999999999999988544433
No 78
>PF14687 DUF4460: Domain of unknown function (DUF4460)
Probab=88.96 E-value=0.72 Score=29.39 Aligned_cols=41 Identities=17% Similarity=0.378 Sum_probs=29.5
Q ss_pred CCCHHHHHHHHHHHHHHhCCCCCCC--------hHHHHHHHHHHHHhCC
Q 040219 49 TTMISEIKTVYRSLVKVYHPDLSGN--------GRDFTKIHNAYETLSD 89 (100)
Q Consensus 49 ~a~~~eIk~ayr~l~~~~hPD~~~~--------~~~~~~i~~Ay~~L~d 89 (100)
..+..+++.+.|..-+..|||..+. ++-++.++.-.+.|..
T Consensus 5 ~~~~~~l~~aLr~Fy~~VHPDlF~~~P~~k~~Ne~SLk~Ln~~Ld~l~~ 53 (112)
T PF14687_consen 5 NLSSPDLRSALRPFYFAVHPDLFGQHPEEKQVNEESLKLLNSYLDSLKK 53 (112)
T ss_pred hhhhHHHHHHHHHHHHHhCCcccccChHHHHhhHHHHHHHHHHHHHHhc
Confidence 4567899999999999999998765 2335555555555544
No 79
>PF10041 DUF2277: Uncharacterized conserved protein (DUF2277); InterPro: IPR018735 Members of this family of hypothetical bacterial proteins have no known function.
Probab=77.55 E-value=13 Score=22.25 Aligned_cols=37 Identities=14% Similarity=0.075 Sum_probs=29.5
Q ss_pred ccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCCC
Q 040219 37 GGSLYEVLRIEPTTMISEIKTVYRSLVKVYHPDLSGN 73 (100)
Q Consensus 37 ~~~~y~iLgv~~~a~~~eIk~ayr~l~~~~hPD~~~~ 73 (100)
++|--.+.|+.|.++.+||..|=.+.+++..=-..++
T Consensus 2 CRnI~~L~~fePpaT~~EI~aAAlQyVRKvSG~~~Ps 38 (78)
T PF10041_consen 2 CRNIKTLRNFEPPATDEEIRAAALQYVRKVSGFRKPS 38 (78)
T ss_pred CcchhhhcCCCCCCCHHHHHHHHHHHHHHHccCCCcc
Confidence 3556677889999999999999999999886554443
No 80
>cd01388 SOX-TCF_HMG-box SOX-TCF_HMG-box, class I member of the HMG-box superfamily of DNA-binding proteins. These proteins contain a single HMG box, and bind the minor groove of DNA in a highly sequence-specific manner. Members include SRY and its homologs in insects and vertebrates, and transcription factor-like proteins, TCF-1, -3, -4, and LEF-1. They appear to bind the minor groove of the A/T C A A A G/C-motif.
Probab=61.47 E-value=26 Score=19.82 Aligned_cols=40 Identities=18% Similarity=0.120 Sum_probs=29.0
Q ss_pred HHHHHHHHHhCCCCCCChHHHHHHHHHHHHhCChhHHHHhh
Q 040219 57 TVYRSLVKVYHPDLSGNGRDFTKIHNAYETLSDPKARVVYD 97 (100)
Q Consensus 57 ~ayr~l~~~~hPD~~~~~~~~~~i~~Ay~~L~dp~~R~~Yd 97 (100)
+..+...+.-||+. ...+....|.+.|..|++.++...++
T Consensus 14 ~~~r~~~~~~~p~~-~~~eisk~l~~~Wk~ls~~eK~~y~~ 53 (72)
T cd01388 14 KRHRRKVLQEYPLK-ENRAISKILGDRWKALSNEEKQPYYE 53 (72)
T ss_pred HHHHHHHHHHCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 44566667779984 45678889999999999776654443
No 81
>PF07709 SRR: Seven Residue Repeat; InterPro: IPR011714 This repeat is found in some Plasmodium and Theileria proteins.
Probab=60.47 E-value=9.7 Score=15.09 Aligned_cols=13 Identities=62% Similarity=0.976 Sum_probs=8.5
Q ss_pred HHHHHHHHHHHhC
Q 040219 76 DFTKIHNAYETLS 88 (100)
Q Consensus 76 ~~~~i~~Ay~~L~ 88 (100)
.|..+..||+.|+
T Consensus 2 ~~~~V~~aY~~l~ 14 (14)
T PF07709_consen 2 KFEKVKNAYEQLS 14 (14)
T ss_pred cHHHHHHHHHhcC
Confidence 3566777777663
No 82
>PF07739 TipAS: TipAS antibiotic-recognition domain; InterPro: IPR012925 TipAL is a bacterial transcriptional regulator of the MerR family. The tipA gene can be expressed as a long form, TipAL, and a short form, TipAS, which constitutes the C-terminal part of TipAL. TipAS forms the antibiotic-recognition domain []. This domain, which has an alpha-helical globin-like fold, is also found at the C terminus of other MerR family transcription factors, including Mta, a central regulator of multidrug resistance in Bacillus subtilis [], and SkgA from Caulobacter crescentus []. ; GO: 0003677 DNA binding, 0045892 negative regulation of transcription, DNA-dependent; PDB: 1NY9_A 3HH0_A 3QAO_A.
Probab=55.89 E-value=39 Score=20.53 Aligned_cols=48 Identities=19% Similarity=0.513 Sum_probs=30.8
Q ss_pred ccCCCC-CHHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHhCChhHHHHhh
Q 040219 45 RIEPTT-MISEIKTVYRSLVKVYHPDLSGNGRDFTKIHNAYETLSDPKARVVYD 97 (100)
Q Consensus 45 gv~~~a-~~~eIk~ayr~l~~~~hPD~~~~~~~~~~i~~Ay~~L~dp~~R~~Yd 97 (100)
|++|+. .-.+|-+.+..++..+++ .+.+.+..|.+.| +.||.-+..||
T Consensus 51 g~~p~s~evq~l~~~~~~~~~~~~~---~~~~~~~~l~~~y--~~~~~~~~~~~ 99 (118)
T PF07739_consen 51 GVDPDSPEVQELAERWMELINQFTG---GDPELLRGLAQMY--VEDPRFAAMYD 99 (118)
T ss_dssp T--TT-HHHHHHHHHHHHHHHHSS------HHHHHHHHHHT--TSTHHHHHHHG
T ss_pred CCCcCCHHHHHHHHHHHHHHHHHhC---CCHHHHHHHHHHH--HcCHHHHhhcc
Confidence 455554 334566777777776666 4567888888888 78888888877
No 83
>cd01390 HMGB-UBF_HMG-box HMGB-UBF_HMG-box, class II and III members of the HMG-box superfamily of DNA-binding proteins. These proteins bind the minor groove of DNA in a non-sequence specific fashion and contain two or more tandem HMG boxes. Class II members include non-histone chromosomal proteins, HMG1 and HMG2, which bind to bent or distorted DNA such as four-way DNA junctions, synthetic DNA cruciforms, kinked cisplatin-modified DNA, DNA bulges, cross-overs in supercoiled DNA, and can cause looping of linear DNA. Class III members include nucleolar and mitochondrial transcription factors, UBF and mtTF1, which bind four-way DNA junctions.
Probab=48.59 E-value=43 Score=18.02 Aligned_cols=35 Identities=17% Similarity=0.210 Sum_probs=25.0
Q ss_pred HHHHHHHhCCCCCCChHHHHHHHHHHHHhCChhHHH
Q 040219 59 YRSLVKVYHPDLSGNGRDFTKIHNAYETLSDPKARV 94 (100)
Q Consensus 59 yr~l~~~~hPD~~~~~~~~~~i~~Ay~~L~dp~~R~ 94 (100)
.+...+.-||+. ...+....|.+.|..|++..+..
T Consensus 15 ~r~~~~~~~p~~-~~~~i~~~~~~~W~~ls~~eK~~ 49 (66)
T cd01390 15 QRPKLKKENPDA-SVTEVTKILGEKWKELSEEEKKK 49 (66)
T ss_pred HHHHHHHHCcCC-CHHHHHHHHHHHHHhCCHHHHHH
Confidence 455556678873 35678899999999999755443
No 84
>COG0089 RplW Ribosomal protein L23 [Translation, ribosomal structure and biogenesis]
Probab=45.54 E-value=22 Score=21.98 Aligned_cols=21 Identities=29% Similarity=0.474 Sum_probs=18.4
Q ss_pred ccccCCCCCHHHHHHHHHHHH
Q 040219 43 VLRIEPTTMISEIKTVYRSLV 63 (100)
Q Consensus 43 iLgv~~~a~~~eIk~ayr~l~ 63 (100)
+|-|+++|+..+||+|...+-
T Consensus 25 vF~V~~~AtK~~IK~AvE~lF 45 (94)
T COG0089 25 VFIVDPDATKPEIKAAVEELF 45 (94)
T ss_pred EEEECCCCCHHHHHHHHHHHh
Confidence 678999999999999998764
No 85
>cd01389 MATA_HMG-box MATA_HMG-box, class I member of the HMG-box superfamily of DNA-binding proteins. These proteins contain a single HMG box, and bind the minor groove of DNA in a highly sequence-specific manner. Members include the fungal mating type gene products MC, MATA1 and Ste11.
Probab=45.46 E-value=58 Score=18.56 Aligned_cols=38 Identities=16% Similarity=0.092 Sum_probs=28.0
Q ss_pred HHHHHHHHHHhCCCCCCChHHHHHHHHHHHHhCChhHHH
Q 040219 56 KTVYRSLVKVYHPDLSGNGRDFTKIHNAYETLSDPKARV 94 (100)
Q Consensus 56 k~ayr~l~~~~hPD~~~~~~~~~~i~~Ay~~L~dp~~R~ 94 (100)
.+.++..++.-+|+. ...+....|.+.|..|++.++..
T Consensus 13 ~~~~r~~~~~~~p~~-~~~eisk~~g~~Wk~ls~eeK~~ 50 (77)
T cd01389 13 RQDKHAQLKTENPGL-TNNEISRIIGRMWRSESPEVKAY 50 (77)
T ss_pred HHHHHHHHHHHCCCC-CHHHHHHHHHHHHhhCCHHHHHH
Confidence 455677778889985 35678888999999999655443
No 86
>PF08447 PAS_3: PAS fold; InterPro: IPR013655 The PAS fold corresponds to the structural domain that has previously been defined as PAS and PAC motifs []. The PAS fold appears in archaea, eubacteria and eukarya. The PAS domain contains a sensory box, or S-box domain that occupies the central portion of the PAS domain but is more widely distributed. It is often tandemly repeated. Known prosthetic groups bound in the S-box domain include haem in the oxygen sensor FixL [], FAD in the redox potential sensor NifL [], and a 4-hydroxycinnamyl chromophore in photoactive yellow protein []. Proteins containing the domain often contain other regulatory domains such as response regulator or sensor histidine kinase domains. Other S-box proteins include phytochromes and the aryl hydrocarbon receptor nuclear translocator. This domain has been found in the gene product of the madA gene of the filamentous zygomycete fungus Phycomyces blakesleeanus. It has been shown that MadA encodes a blue-light photoreceptor for phototropism and other light responses. The gene is involved in the phototropic responses associated with sporangiophore growth; they exhibit phototropism by bending toward near-UV and blue wavelengths and away from far-UV wavelengths in a manner that is physiologically similar to plant phototropic responses [].; GO: 0005515 protein binding; PDB: 3NJA_D 3H9W_A 3GDI_B 3ICY_A 3EEH_A 3MR0_B.
Probab=44.82 E-value=4.9 Score=22.93 Aligned_cols=30 Identities=30% Similarity=0.592 Sum_probs=20.5
Q ss_pred cCcccccccCCCCCHHHH-HHHHHHHHHHhCCCCC
Q 040219 38 GSLYEVLRIEPTTMISEI-KTVYRSLVKVYHPDLS 71 (100)
Q Consensus 38 ~~~y~iLgv~~~a~~~eI-k~ayr~l~~~~hPD~~ 71 (100)
.+++++||.++ +++ ......+....|||-.
T Consensus 6 ~~~~~i~G~~~----~~~~~~~~~~~~~~ihpdD~ 36 (91)
T PF08447_consen 6 DNFYEIFGYSP----EEIGKPDFEEWLERIHPDDR 36 (91)
T ss_dssp THHHHHHTS-H----HHHTCBEHHHHHHHB-TTTH
T ss_pred HHHHHHhCCCH----HHhccCCHHHHHhhcCHHHH
Confidence 56789999854 566 5566777888899843
No 87
>cd00084 HMG-box High Mobility Group (HMG)-box is found in a variety of eukaryotic chromosomal proteins and transcription factors. HMGs bind to the minor groove of DNA and have been classified by DNA binding preferences. Two phylogenically distinct groups of Class I proteins bind DNA in a sequence specific fashion and contain a single HMG box. One group (SOX-TCF) includes transcription factors, TCF-1, -3, -4; and also SRY and LEF-1, which bind four-way DNA junctions and duplex DNA targets. The second group (MATA) includes fungal mating type gene products MC, MATA1 and Ste11. Class II and III proteins (HMGB-UBF) bind DNA in a non-sequence specific fashion and contain two or more tandem HMG boxes. Class II members include non-histone chromosomal proteins, HMG1 and HMG2, which bind to bent or distorted DNA such as four-way DNA junctions, synthetic DNA cruciforms, kinked cisplatin-modified DNA, DNA bulges, cross-overs in supercoiled DNA, and can cause looping of linear DNA. Class III member
Probab=43.34 E-value=52 Score=17.49 Aligned_cols=39 Identities=23% Similarity=0.273 Sum_probs=26.9
Q ss_pred HHHHHHHHHHhCCCCCCChHHHHHHHHHHHHhCChhHHHH
Q 040219 56 KTVYRSLVKVYHPDLSGNGRDFTKIHNAYETLSDPKARVV 95 (100)
Q Consensus 56 k~ayr~l~~~~hPD~~~~~~~~~~i~~Ay~~L~dp~~R~~ 95 (100)
.+.++...+.-||+.. ..+....+.+.|..|++.++...
T Consensus 12 ~~~~~~~~~~~~~~~~-~~~i~~~~~~~W~~l~~~~k~~y 50 (66)
T cd00084 12 SQEHRAEVKAENPGLS-VGEISKILGEMWKSLSEEEKKKY 50 (66)
T ss_pred HHHHHHHHHHHCcCCC-HHHHHHHHHHHHHhCCHHHHHHH
Confidence 3455666777788833 45678889999999997554433
No 88
>CHL00030 rpl23 ribosomal protein L23
Probab=41.64 E-value=29 Score=21.36 Aligned_cols=21 Identities=14% Similarity=0.235 Sum_probs=18.2
Q ss_pred ccccCCCCCHHHHHHHHHHHH
Q 040219 43 VLRIEPTTMISEIKTVYRSLV 63 (100)
Q Consensus 43 iLgv~~~a~~~eIk~ayr~l~ 63 (100)
+|-|+++++..|||+|...+-
T Consensus 23 ~F~V~~~anK~eIK~avE~lf 43 (93)
T CHL00030 23 TFDVDSGSTKTEIKHWIELFF 43 (93)
T ss_pred EEEECCCCCHHHHHHHHHHHh
Confidence 577999999999999998763
No 89
>KOG0527 consensus HMG-box transcription factor [Transcription]
Probab=38.93 E-value=50 Score=24.99 Aligned_cols=41 Identities=17% Similarity=0.212 Sum_probs=32.8
Q ss_pred HHHHHHHHHhCCCCCCChHHHHHHHHHHHHhCChhHHHHhhc
Q 040219 57 TVYRSLVKVYHPDLSGNGRDFTKIHNAYETLSDPKARVVYDM 98 (100)
Q Consensus 57 ~ayr~l~~~~hPD~~~~~~~~~~i~~Ay~~L~dp~~R~~Yd~ 98 (100)
+..|+.+.+--||. .+.|..+.|-+-|..|++.++|-.+|.
T Consensus 75 q~~RRkma~qnP~m-HNSEISK~LG~~WK~Lse~EKrPFi~E 115 (331)
T KOG0527|consen 75 QGQRRKLAKQNPKM-HNSEISKRLGAEWKLLSEEEKRPFVDE 115 (331)
T ss_pred HHHHHHHHHhCcch-hhHHHHHHHHHHHhhcCHhhhccHHHH
Confidence 45566666677775 467999999999999999999877763
No 90
>TIGR03636 L23_arch archaeal ribosomal protein L23. This model describes the archaeal ribosomal protein L23P and rigorously excludes the bacterial counterpart L23. In order to capture every known instance of archaeal L23P, the trusted cutoff is set lower than a few of the highest scoring eukaryotic cytosolic ribosomal counterparts.
Probab=38.43 E-value=36 Score=20.17 Aligned_cols=21 Identities=14% Similarity=0.259 Sum_probs=18.1
Q ss_pred ccccCCCCCHHHHHHHHHHHH
Q 040219 43 VLRIEPTTMISEIKTVYRSLV 63 (100)
Q Consensus 43 iLgv~~~a~~~eIk~ayr~l~ 63 (100)
.|-|+++++..|||++...+-
T Consensus 18 ~F~V~~~anK~eIK~avE~lf 38 (77)
T TIGR03636 18 TFIVDRKATKGDIKRAVEKLF 38 (77)
T ss_pred EEEECCCCCHHHHHHHHHHHh
Confidence 567899999999999988763
No 91
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=36.63 E-value=30 Score=18.42 Aligned_cols=23 Identities=17% Similarity=0.369 Sum_probs=18.3
Q ss_pred ccccCCCCCHHHHHHHHHHHHHH
Q 040219 43 VLRIEPTTMISEIKTVYRSLVKV 65 (100)
Q Consensus 43 iLgv~~~a~~~eIk~ayr~l~~~ 65 (100)
|=||+++++.++|++.|.+....
T Consensus 3 v~nlp~~~t~~~l~~~f~~~g~i 25 (70)
T PF00076_consen 3 VGNLPPDVTEEELRDFFSQFGKI 25 (70)
T ss_dssp EESETTTSSHHHHHHHHHTTSTE
T ss_pred EcCCCCcCCHHHHHHHHHHhhhc
Confidence 44789999999999998875443
No 92
>PF12725 DUF3810: Protein of unknown function (DUF3810); InterPro: IPR024294 This family of bacterial proteins is functionally uncharacterised. Proteins in this family are typically between 333 and 377 amino acids in length and contain a conserved HEXXH sequence motif that is characteristic of metallopeptidases. This family may therefore belong to an as yet uncharacterised family of peptidase enzymes.
Probab=36.63 E-value=1.2e+02 Score=22.61 Aligned_cols=54 Identities=24% Similarity=0.320 Sum_probs=38.1
Q ss_pred ccCcccccccCC-CCCHHHHHHHHHHHHHHh-------CCCCCC-------ChHHHHHHHHHHHHhCCh
Q 040219 37 GGSLYEVLRIEP-TTMISEIKTVYRSLVKVY-------HPDLSG-------NGRDFTKIHNAYETLSDP 90 (100)
Q Consensus 37 ~~~~y~iLgv~~-~a~~~eIk~ayr~l~~~~-------hPD~~~-------~~~~~~~i~~Ay~~L~dp 90 (100)
..++++-||++. ..+.+|+.+-.+.++.+. ++|..+ ..+.+.++.++|+.|++.
T Consensus 81 R~pl~~~l~l~~~~~~~~eL~~l~~~li~~~N~l~~~i~~~~~~~~~~~~~~~~i~~~~~~~y~~l~~~ 149 (318)
T PF12725_consen 81 RPPLSERLGLETEEYSTEELKELTEYLIEKANELREQITEDDNGVVDIPYDKEEIFEEAREGYENLAER 149 (318)
T ss_pred CcCHHHHcCCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCCCccccccCCCCHHHHHHHHHHHHHHHHHh
Confidence 356778899987 679999887776665543 444332 156789999999988753
No 93
>PF15178 TOM_sub5: Mitochondrial import receptor subunit TOM5 homolog
Probab=35.43 E-value=55 Score=17.74 Aligned_cols=24 Identities=21% Similarity=0.250 Sum_probs=19.2
Q ss_pred ccccccCCCCCHHHHHHHHHHHHH
Q 040219 41 YEVLRIEPTTMISEIKTVYRSLVK 64 (100)
Q Consensus 41 y~iLgv~~~a~~~eIk~ayr~l~~ 64 (100)
|.+=|+.|..+++|.|+.-|+-+.
T Consensus 2 ~~~egl~pk~DPeE~k~kmR~dvi 25 (51)
T PF15178_consen 2 FRIEGLGPKMDPEEMKRKMREDVI 25 (51)
T ss_pred cccccCCCCCCHHHHHHHHHHHHH
Confidence 456788999999999988876544
No 94
>PRK05738 rplW 50S ribosomal protein L23; Reviewed
Probab=33.34 E-value=46 Score=20.22 Aligned_cols=21 Identities=29% Similarity=0.474 Sum_probs=17.9
Q ss_pred ccccCCCCCHHHHHHHHHHHH
Q 040219 43 VLRIEPTTMISEIKTVYRSLV 63 (100)
Q Consensus 43 iLgv~~~a~~~eIk~ayr~l~ 63 (100)
.|-|++.++..|||++...+-
T Consensus 24 ~F~V~~~a~K~eIK~aie~lf 44 (92)
T PRK05738 24 VFEVAPDATKPEIKAAVEKLF 44 (92)
T ss_pred EEEECCCCCHHHHHHHHHHHc
Confidence 567899999999999988763
No 95
>PF00505 HMG_box: HMG (high mobility group) box; InterPro: IPR000910 High mobility group (HMG or HMGB) proteins are a family of relatively low molecular weight non-histone components in chromatin. HMG1 (also called HMG-T in fish) and HMG2 are two highly related proteins that bind single-stranded DNA preferentially and unwind double-stranded DNA. Although they have no sequence specificity, they have a high affinity for bent or distorted DNA, and bend linear DNA. HMG1 and HMG2 contain two DNA-binding HMG-box domains (A and B) that show structural and functional differences, and have a long acidic C-terminal domain rich in aspartic and glutamic acid residues. The acidic tail modulates the affinity of the tandem HMG boxes in HMG1 and 2 for a variety of DNA targets. HMG1 and 2 appear to play important architectural roles in the assembly of nucleoprotein complexes in a variety of biological processes, for example V(D)J recombination, the initiation of transcription, and DNA repair []. The profile in this entry describing the HMG-domains is much more general than the signature. In addition to the HMG1 and HMG2 proteins, HMG-domains occur in single or multiple copies in the following protein classes; the SOX family of transcription factors; SRY sex determining region Y protein and related proteins []; LEF1 lymphoid enhancer binding factor 1 []; SSRP recombination signal recognition protein; MTF1 mitochondrial transcription factor 1; UBF1/2 nucleolar transcription factors; Abf2 yeast ARS-binding factor []; and Saccharomyces cerevisiae transcription factors Ixr1, Rox1, Nhp6a, Nhp6b and Spp41.; GO: 0003677 DNA binding; PDB: 1I11_A 1J3C_A 1J3D_A 1WZ6_A 1WGF_A 2D7L_A 1GT0_D 3U2B_C 2CRJ_A 2CS1_A ....
Probab=32.49 E-value=69 Score=17.37 Aligned_cols=39 Identities=26% Similarity=0.314 Sum_probs=26.4
Q ss_pred HHHHHHHHHHhCCCCCCChHHHHHHHHHHHHhCChhHHHHh
Q 040219 56 KTVYRSLVKVYHPDLSGNGRDFTKIHNAYETLSDPKARVVY 96 (100)
Q Consensus 56 k~ayr~l~~~~hPD~~~~~~~~~~i~~Ay~~L~dp~~R~~Y 96 (100)
.+.++...+..||+.. ..+....|.+.|.-|++. .|..|
T Consensus 12 ~~~~~~~~k~~~p~~~-~~~i~~~~~~~W~~l~~~-eK~~y 50 (69)
T PF00505_consen 12 CKEKRAKLKEENPDLS-NKEISKILAQMWKNLSEE-EKAPY 50 (69)
T ss_dssp HHHHHHHHHHHSTTST-HHHHHHHHHHHHHCSHHH-HHHHH
T ss_pred HHHHHHHHHHHhcccc-cccchhhHHHHHhcCCHH-HHHHH
Confidence 3445566667799866 557788888899888754 44444
No 96
>PF12434 Malate_DH: Malate dehydrogenase enzyme
Probab=30.67 E-value=71 Score=15.25 Aligned_cols=18 Identities=17% Similarity=0.213 Sum_probs=14.6
Q ss_pred CHHHHHHHHHHHHHHhCC
Q 040219 51 MISEIKTVYRSLVKVYHP 68 (100)
Q Consensus 51 ~~~eIk~ayr~l~~~~hP 68 (100)
..++.+.+-|+.++.||-
T Consensus 9 ~~~~~r~~lR~AALeYHe 26 (28)
T PF12434_consen 9 NKEDKRAQLRQAALEYHE 26 (28)
T ss_pred chHHHHHHHHHHHHHhcc
Confidence 347788899999999983
No 97
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=30.59 E-value=1.5e+02 Score=20.94 Aligned_cols=55 Identities=15% Similarity=0.061 Sum_probs=44.8
Q ss_pred cccCCCCCHHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHhCChhHHHHhhc
Q 040219 44 LRIEPTTMISEIKTVYRSLVKVYHPDLSGNGRDFTKIHNAYETLSDPKARVVYDM 98 (100)
Q Consensus 44 Lgv~~~a~~~eIk~ayr~l~~~~hPD~~~~~~~~~~i~~Ay~~L~dp~~R~~Yd~ 98 (100)
.|...+.+.++|.+..=.++..+|.|-----++-..|..=|+++.+|.-...|+.
T Consensus 3 ~GC~~~~~t~~iC~~nP~LC~dLn~Dg~Cr~eRtdLI~~Ry~~~~~pt~~~ky~~ 57 (203)
T PF11207_consen 3 SGCFENPNTEQICENNPELCEDLNDDGWCRYERTDLIWHRYELKKNPTDKNKYQL 57 (203)
T ss_pred cCcCCCCCHHHHHccCHHHHHHhCcchhhccHhHHHHHHHHHHhcCCchHHHHHH
Confidence 4666677889999999999999996655556788888888999999988888764
No 98
>PF03820 Mtc: Tricarboxylate carrier; InterPro: IPR004686 The MTC family consists of a limited number of homologues, all from eukaryotes. One member of the family has been functionally characterised as a tricarboxylate carrier from rat liver mitochondria. The rat liver mitochondrial tricarboxylate carrier has been reported to transport citrate, cis-aconitate, threo-D-isocitrate, D- and L-tartrate, malate, succinate and phosphoenolpyruvate. It presumably functions by a proton symport mechanism. The rest of the characterised proteins appear to be sideroflexins involved in iron transport.; GO: 0008324 cation transmembrane transporter activity, 0006812 cation transport, 0055085 transmembrane transport, 0016020 membrane
Probab=29.81 E-value=62 Score=24.20 Aligned_cols=26 Identities=19% Similarity=0.276 Sum_probs=22.2
Q ss_pred CCCCCHHHHHHHHHHHHHHhCCCCCC
Q 040219 47 EPTTMISEIKTVYRSLVKVYHPDLSG 72 (100)
Q Consensus 47 ~~~a~~~eIk~ayr~l~~~~hPD~~~ 72 (100)
+++.+.+||-+|.+-.-..+|||.+.
T Consensus 45 ~~~~~~~~lw~Ak~l~~Sa~HPDTge 70 (308)
T PF03820_consen 45 PPGLTDDELWKAKKLYDSAFHPDTGE 70 (308)
T ss_pred CCCCCHHHHHHHHHHhhcccCCCCCC
Confidence 34469999999999999999999765
No 99
>KOG3960 consensus Myogenic helix-loop-helix transcription factor [Transcription]
Probab=29.69 E-value=39 Score=24.79 Aligned_cols=13 Identities=38% Similarity=0.715 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHhC
Q 040219 76 DFTKIHNAYETLS 88 (100)
Q Consensus 76 ~~~~i~~Ay~~L~ 88 (100)
+.++||+|+|+|.
T Consensus 129 RLkKVNEAFE~LK 141 (284)
T KOG3960|consen 129 RLKKVNEAFETLK 141 (284)
T ss_pred HHHHHHHHHHHHH
Confidence 6899999999984
No 100
>PRK14548 50S ribosomal protein L23P; Provisional
Probab=29.34 E-value=60 Score=19.53 Aligned_cols=21 Identities=14% Similarity=0.256 Sum_probs=18.1
Q ss_pred ccccCCCCCHHHHHHHHHHHH
Q 040219 43 VLRIEPTTMISEIKTVYRSLV 63 (100)
Q Consensus 43 iLgv~~~a~~~eIk~ayr~l~ 63 (100)
.|-|++.++..|||+|...+-
T Consensus 25 ~F~V~~~anK~eIK~AvE~lf 45 (84)
T PRK14548 25 TFIVDRRATKPDIKRAVEELF 45 (84)
T ss_pred EEEECCCCCHHHHHHHHHHHh
Confidence 467899999999999998773
No 101
>PF04282 DUF438: Family of unknown function (DUF438); InterPro: IPR007380 This is a a group of uncharacterised proteins.
Probab=29.08 E-value=31 Score=20.18 Aligned_cols=28 Identities=14% Similarity=0.188 Sum_probs=22.0
Q ss_pred ccccCCCCCHHHHHHHHHHHHHHhCCCC
Q 040219 43 VLRIEPTTMISEIKTVYRSLVKVYHPDL 70 (100)
Q Consensus 43 iLgv~~~a~~~eIk~ayr~l~~~~hPD~ 70 (100)
|+.++.+.+.++||+.|.+......|--
T Consensus 6 i~~Lh~G~~~e~vk~~F~~~~~~Vs~~E 33 (71)
T PF04282_consen 6 IKRLHEGEDPEEVKEEFKKLFSDVSASE 33 (71)
T ss_pred HHHHhCCCCHHHHHHHHHHHHCCCCHHH
Confidence 3457788899999999999988666643
No 102
>PF06767 Sif: Sif protein; InterPro: IPR010637 This family consists of several SifA and SifB and SseJ proteins, which seem to be specific to the Salmonella species. SifA, SifB and SseJ have been demonstrated to localise to the Salmonella-containing vacuole (SCV) and to Salmonella-induced filaments (Sifs). Trafficking of SseJ and SifB away from the SCV requires the SPI-2 effector SifA. SseJ trafficking away from the SCV along Sifs is unnecessary for its virulence function [].; PDB: 3HW2_A 3CXB_A.
Probab=28.62 E-value=1.3e+02 Score=22.91 Aligned_cols=41 Identities=15% Similarity=0.302 Sum_probs=30.7
Q ss_pred HHHHHHHHHHhCCCCCCChHHHHHHHHHHHHhCChhHHHHh
Q 040219 56 KTVYRSLVKVYHPDLSGNGRDFTKIHNAYETLSDPKARVVY 96 (100)
Q Consensus 56 k~ayr~l~~~~hPD~~~~~~~~~~i~~Ay~~L~dp~~R~~Y 96 (100)
.+|..-+...+|||..+..+.+..+-.....|.-|..|..|
T Consensus 44 aeA~~cI~eLc~~~~~pT~~~l~~iF~~LKeLAspg~Kd~F 84 (337)
T PF06767_consen 44 AEALECIFELCHPDPPPTRERLEDIFFELKELASPGYKDRF 84 (337)
T ss_dssp HHHHHHHHHHHSSSS---HHHHHHHHHHHHHHC-HHHHTTE
T ss_pred HHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHhcCchhhhce
Confidence 56788888999999998888888888888888888888764
No 103
>PF14893 PNMA: PNMA
Probab=27.74 E-value=53 Score=24.81 Aligned_cols=20 Identities=25% Similarity=0.260 Sum_probs=17.3
Q ss_pred ccccCCCCCHHHHHHHHHHH
Q 040219 43 VLRIEPTTMISEIKTVYRSL 62 (100)
Q Consensus 43 iLgv~~~a~~~eIk~ayr~l 62 (100)
|+||+.+++..||..+-+.-
T Consensus 23 v~giP~dc~~~ei~e~l~~~ 42 (331)
T PF14893_consen 23 VLGIPEDCEEAEIEEALQAA 42 (331)
T ss_pred eecCCCCCCHHHHHHHHHHh
Confidence 88999999999999886653
No 104
>COG2879 Uncharacterized small protein [Function unknown]
Probab=27.17 E-value=1.3e+02 Score=17.28 Aligned_cols=18 Identities=22% Similarity=0.244 Sum_probs=14.2
Q ss_pred HHHHHHHHHHhCCCCCCC
Q 040219 56 KTVYRSLVKVYHPDLSGN 73 (100)
Q Consensus 56 k~ayr~l~~~~hPD~~~~ 73 (100)
-..|-.-+++.|||+.+-
T Consensus 25 YdnYVehmr~~hPd~p~m 42 (65)
T COG2879 25 YDNYVEHMRKKHPDKPPM 42 (65)
T ss_pred HHHHHHHHHHhCcCCCcc
Confidence 346778889999999774
No 105
>PF00276 Ribosomal_L23: Ribosomal protein L23; InterPro: IPR013025 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This domain is found in both eukaryotic L25 and prokaryotic and eukaryotic L23 proteins.; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 3DF4_T 3DF2_T 4A1E_R 4A1A_R 4A1C_R 4A17_R 2HGU_W 2HGQ_W 1N88_A 2HGJ_W ....
Probab=25.88 E-value=75 Score=19.14 Aligned_cols=21 Identities=19% Similarity=0.434 Sum_probs=17.9
Q ss_pred ccccCCCCCHHHHHHHHHHHH
Q 040219 43 VLRIEPTTMISEIKTVYRSLV 63 (100)
Q Consensus 43 iLgv~~~a~~~eIk~ayr~l~ 63 (100)
.+.|+++++..|||++...+-
T Consensus 24 tF~V~~~atK~~Ik~aie~iy 44 (91)
T PF00276_consen 24 TFEVDPRATKTEIKEAIEKIY 44 (91)
T ss_dssp EEEETTTSTHHHHHHHHHHHH
T ss_pred EEEEeCCCCHHHHHHHHHhhc
Confidence 577899999999999987763
No 106
>PF04967 HTH_10: HTH DNA binding domain; InterPro: IPR007050 Numerous bacterial transcription regulatory proteins bind DNA via a helix-turn-helix (HTH) motif. This entry represents the HTH DNA binding domain found in Halobacterium salinarium (Halobacterium halobium) and described as a putative bacterio-opsin activator.
Probab=25.30 E-value=24 Score=19.40 Aligned_cols=26 Identities=27% Similarity=0.367 Sum_probs=18.8
Q ss_pred cCcccccccCCCCCHHHHHHHHHHHH
Q 040219 38 GSLYEVLRIEPTTMISEIKTVYRSLV 63 (100)
Q Consensus 38 ~~~y~iLgv~~~a~~~eIk~ayr~l~ 63 (100)
.+.=+.|||++.+-.+.|+++-++++
T Consensus 27 ~elA~~lgis~st~~~~LRrae~kli 52 (53)
T PF04967_consen 27 EELAEELGISKSTVSEHLRRAERKLI 52 (53)
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHHHh
Confidence 34456788888777777888877764
No 107
>PF12515 CaATP_NAI: Ca2+-ATPase N terminal autoinhibitory domain; InterPro: IPR024750 This entry represents the N-terminal autoinhibitory calmodulin-binding domain characteristic of certain calcium-transporting ATPases []. This domain binds calmodulin in a calcium-dependent fashion and has a conserved RRFR sequence motif. There are two completely conserved residues (F and W) that may be functionally important.; GO: 0005516 calmodulin binding
Probab=24.71 E-value=73 Score=17.19 Aligned_cols=26 Identities=12% Similarity=0.281 Sum_probs=12.4
Q ss_pred CCChHHHHHHHHHHHHhCChhHHHHh
Q 040219 71 SGNGRDFTKIHNAYETLSDPKARVVY 96 (100)
Q Consensus 71 ~~~~~~~~~i~~Ay~~L~dp~~R~~Y 96 (100)
+++.+..+.-.+|..+..++.+|-.|
T Consensus 12 n~s~e~l~rWR~a~~lv~N~~RRFR~ 37 (47)
T PF12515_consen 12 NSSEEALRRWRQAVGLVKNARRRFRY 37 (47)
T ss_pred CCCHHHHHHHHHHhHHhccccceeee
Confidence 34444444444555445555554444
No 108
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known.
Probab=24.57 E-value=1.5e+02 Score=21.46 Aligned_cols=34 Identities=15% Similarity=0.460 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHhCChh
Q 040219 52 ISEIKTVYRSLVKVYHPDLSGNGRDFTKIHNAYETLSDPK 91 (100)
Q Consensus 52 ~~eIk~ayr~l~~~~hPD~~~~~~~~~~i~~Ay~~L~dp~ 91 (100)
.+.+...+.+++..+.| +.|..|.+||..|++..
T Consensus 181 ~~~ld~~l~~~~~~Fd~------~~Y~~v~~AY~lLgk~~ 214 (291)
T PF10475_consen 181 EEQLDSDLSKVCQDFDP------DKYSKVQEAYQLLGKTQ 214 (291)
T ss_pred HHHHHHHHHHHHHhCCH------HHHHHHHHHHHHHhhhH
Confidence 34455666666665544 67889999999999653
No 109
>smart00362 RRM_2 RNA recognition motif.
Probab=24.56 E-value=86 Score=16.00 Aligned_cols=21 Identities=14% Similarity=0.322 Sum_probs=17.0
Q ss_pred ccccCCCCCHHHHHHHHHHHH
Q 040219 43 VLRIEPTTMISEIKTVYRSLV 63 (100)
Q Consensus 43 iLgv~~~a~~~eIk~ayr~l~ 63 (100)
|-||+.+.+.++|++.+.+..
T Consensus 4 i~~l~~~~~~~~l~~~~~~~g 24 (72)
T smart00362 4 VGNLPPDVTEEDLKELFSKFG 24 (72)
T ss_pred EcCCCCcCCHHHHHHHHHhcC
Confidence 557888999999999887653
No 110
>smart00360 RRM RNA recognition motif.
Probab=24.53 E-value=85 Score=15.91 Aligned_cols=20 Identities=10% Similarity=0.288 Sum_probs=16.2
Q ss_pred cccCCCCCHHHHHHHHHHHH
Q 040219 44 LRIEPTTMISEIKTVYRSLV 63 (100)
Q Consensus 44 Lgv~~~a~~~eIk~ayr~l~ 63 (100)
-||+...+.++|+..+....
T Consensus 2 ~~l~~~~~~~~l~~~f~~~g 21 (71)
T smart00360 2 GNLPPDVTEEELRELFSKFG 21 (71)
T ss_pred CCCCcccCHHHHHHHHHhhC
Confidence 46788889999999988654
No 111
>KOG2320 consensus RAS effector RIN1 (contains VPS domain) [Intracellular trafficking, secretion, and vesicular transport]
Probab=23.98 E-value=1.1e+02 Score=25.25 Aligned_cols=38 Identities=13% Similarity=0.410 Sum_probs=26.7
Q ss_pred ccCCCCCHHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHh
Q 040219 45 RIEPTTMISEIKTVYRSLVKVYHPDLSGNGRDFTKIHNAYETL 87 (100)
Q Consensus 45 gv~~~a~~~eIk~ayr~l~~~~hPD~~~~~~~~~~i~~Ay~~L 87 (100)
-++..+..++||.++..+.+.|||. .+.+.+.+|++.|
T Consensus 396 ~~Ps~~~mEqvk~k~~~m~r~YSP~-----kkl~~Llk~ckLl 433 (651)
T KOG2320|consen 396 STPSDVLMEQVKQKFTAMQRRYSPS-----KKLHALLKACKLL 433 (651)
T ss_pred cCCcHHHHHHHHHHHHHHHHhhChH-----HHHHHHHHHHHHH
Confidence 3445567888999999999999995 3444455554443
No 112
>cd01780 PLC_epsilon_RA Ubiquitin-like domain of Phosphatidylinositide-specific phospholipase. PLC_epsilon_RA Phosphatidylinositide-specific phospholipase C (PLC) is a signaling enzyme that hydrolyzes membrane phospholipids to generate inositol triphosphate. PLC-epsilon represents a novel forth class of PLC that has a PLC catalytic core domain, a CDC25 guanine nucleotide exchange factor domain and two RA (Ras-association) domains of which the second is critical for Ras activation of the enzyme.
Probab=23.31 E-value=1.1e+02 Score=18.98 Aligned_cols=34 Identities=15% Similarity=0.214 Sum_probs=23.3
Q ss_pred cCcccccccCCCCCHHHHHHHHHHHHHHhCCCCC
Q 040219 38 GSLYEVLRIEPTTMISEIKTVYRSLVKVYHPDLS 71 (100)
Q Consensus 38 ~~~y~iLgv~~~a~~~eIk~ayr~l~~~~hPD~~ 71 (100)
..+|.||.++...|..+|-+.=-..+++-+||..
T Consensus 11 dqP~~il~a~~~STa~Dvi~Qal~KA~rs~~~~~ 44 (93)
T cd01780 11 DQPYAILRAPRVSTAQDVIQQTLCKARRSNPNPS 44 (93)
T ss_pred CCCeeEEEccccccHHHHHHHHHHHhccCCCCcc
Confidence 5789999999998877755444444444466643
No 113
>PF00880 Nebulin: Nebulin repeat; InterPro: IPR000900 Nebulin is a 600-800kDa protein found in the thin filaments of striated vertebrate muscle. It is presumed to play a role in binding and stabilising F-actin [], essentially by providing a template for actin polymerisation (i.e., acting as an "actin zipper"). The amino acid sequence shows a uniform repeating pattern along its length, a repeated 35-residue motif constituting up to 97% of the polypeptide. Analysis of individual repeats reveals a progressive N- to C-terminal divergence, coupled with an increasing alpha-helix propensity. This correlates with a higher binding affinity for F-actin at the C terminus. Thus, it is postulated that once the repeats have formed an initiation complex, the whole length of the nebulin molecule may then associate in a highly co-operative process with the thin filament, in a manner similar to the closing of a zipper [].
Probab=23.08 E-value=96 Score=14.23 Aligned_cols=24 Identities=25% Similarity=0.277 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHhCChhHHHHhhcc
Q 040219 76 DFTKIHNAYETLSDPKARVVYDMS 99 (100)
Q Consensus 76 ~~~~i~~Ay~~L~dp~~R~~Yd~~ 99 (100)
.+....++.+++||-.-|..|+..
T Consensus 4 ~~~~ak~~~~~~Sd~~Yk~~~ek~ 27 (29)
T PF00880_consen 4 EMVHAKKAAQLQSDVKYKEDYEKS 27 (29)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHc
Confidence 466778888999999888888764
No 114
>PF01388 ARID: ARID/BRIGHT DNA binding domain; InterPro: IPR001606 Members of the recently discovered ARID (AT-rich interaction domain; also known as BRIGHT domain)) family of DNA-binding proteins are found in fungi and invertebrate and vertebrate metazoans. ARID-encoding genes are involved in a variety of biological processes including embryonic development, cell lineage gene regulation and cell cycle control. Although the specific roles of this domain and of ARID-containing proteins in transcriptional regulation are yet to be elucidated, they include both positive and negative transcriptional regulation and a likely involvement in the modification of chromatin structure []. The basic structure of the ARID domain domain appears to be a series of six alpha-helices separated by beta-strands, loops, or turns, but the structured region may extend to an additional helix at either or both ends of the basic six. Based on primary sequence homology, they can be partitioned into three structural classes: Minimal ARID proteins that consist of a core domain formed by six alpha helices; ARID proteins that supplement the core domain with an N-terminal alpha-helix; and Extended-ARID proteins, which contain the core domain and additional alpha-helices at their N- and C-termini. The human SWI-SNF complex protein p270 is an ARID family member with non-sequence-specific DNA binding activity. The ARID consensus and other structural features are common to both p270 and yeast SWI1, suggesting that p270 is a human counterpart of SWI1 []. The approximately 100-residue ARID sequence is present in a series of proteins strongly implicated in the regulation of cell growth, development, and tissue-specific gene expression. Although about a dozen ARID proteins can be identified from database searches, to date, only Bright (a regulator of B-cell-specific gene expression), dead ringer (a Drosophila melanogaster gene product required for normal development), and MRF-2 (which represses expression from the Cytomegalovirus enhancer) have been analyzed directly in regard to their DNA binding properties. Each binds preferentially to AT-rich sites. In contrast, p270 shows no sequence preference in its DNA binding activity, thereby demonstrating that AT-rich binding is not an intrinsic property of ARID domains and that ARID family proteins may be involved in a wider range of DNA interactions [].; GO: 0003677 DNA binding, 0005622 intracellular; PDB: 1C20_A 1KQQ_A 2JRZ_A 2LM1_A 2YQE_A 2JXJ_A 2EH9_A 2CXY_A 2LI6_A 1KN5_A ....
Probab=22.94 E-value=1e+02 Score=18.01 Aligned_cols=9 Identities=11% Similarity=0.390 Sum_probs=4.9
Q ss_pred HHHHHHHhC
Q 040219 59 YRSLVKVYH 67 (100)
Q Consensus 59 yr~l~~~~h 67 (100)
+..++....
T Consensus 60 W~~va~~lg 68 (92)
T PF01388_consen 60 WREVARKLG 68 (92)
T ss_dssp HHHHHHHTT
T ss_pred HHHHHHHhC
Confidence 555555553
No 115
>PRK10613 hypothetical protein; Provisional
Probab=22.81 E-value=34 Score=20.20 Aligned_cols=11 Identities=36% Similarity=0.736 Sum_probs=8.3
Q ss_pred CHHHHHHHHHH
Q 040219 51 MISEIKTVYRS 61 (100)
Q Consensus 51 ~~~eIk~ayr~ 61 (100)
+.++||.+||+
T Consensus 64 Tv~QIK~aYRq 74 (74)
T PRK10613 64 TVKQIKQAYRQ 74 (74)
T ss_pred HHHHHHHHhcC
Confidence 56788888874
No 116
>PTZ00191 60S ribosomal protein L23a; Provisional
Probab=21.74 E-value=92 Score=20.81 Aligned_cols=20 Identities=15% Similarity=0.238 Sum_probs=15.4
Q ss_pred cccCCCCCHHHHHHHHHHHH
Q 040219 44 LRIEPTTMISEIKTVYRSLV 63 (100)
Q Consensus 44 Lgv~~~a~~~eIk~ayr~l~ 63 (100)
|-|+..++..|||+|..++-
T Consensus 87 F~Vd~kAnK~qIK~AVEklf 106 (145)
T PTZ00191 87 FIVDQRANKTQIKKAVEKLY 106 (145)
T ss_pred EEEcCCCCHHHHHHHHHHHh
Confidence 33667889999999988763
No 117
>PF10769 DUF2594: Protein of unknown function (DUF2594); InterPro: IPR019705 This entry represents proteins with unknown function and appear to be restricted to Enterobacteriaceae.
Probab=21.50 E-value=37 Score=20.02 Aligned_cols=11 Identities=55% Similarity=0.839 Sum_probs=8.3
Q ss_pred CHHHHHHHHHH
Q 040219 51 MISEIKTVYRS 61 (100)
Q Consensus 51 ~~~eIk~ayr~ 61 (100)
+..+||.+||+
T Consensus 64 Ti~QIK~aYRq 74 (74)
T PF10769_consen 64 TIKQIKTAYRQ 74 (74)
T ss_pred HHHHHHHHhcC
Confidence 56788888874
No 118
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=20.87 E-value=1.1e+02 Score=15.60 Aligned_cols=20 Identities=10% Similarity=0.385 Sum_probs=17.1
Q ss_pred ccccCCCCCHHHHHHHHHHH
Q 040219 43 VLRIEPTTMISEIKTVYRSL 62 (100)
Q Consensus 43 iLgv~~~a~~~eIk~ayr~l 62 (100)
|-|++.+.+.++|+.-+...
T Consensus 4 i~~l~~~~~~~~i~~~~~~~ 23 (74)
T cd00590 4 VGNLPPDVTEEDLRELFSKF 23 (74)
T ss_pred EeCCCCccCHHHHHHHHHhc
Confidence 55888899999999999885
No 119
>PRK09498 sifA secreted effector protein SifA; Reviewed
Probab=20.48 E-value=2.8e+02 Score=20.94 Aligned_cols=41 Identities=17% Similarity=0.189 Sum_probs=30.3
Q ss_pred HHHHHHHHHHhCCCCCCChHHHHHHHHHHHHhCChhHHHHh
Q 040219 56 KTVYRSLVKVYHPDLSGNGRDFTKIHNAYETLSDPKARVVY 96 (100)
Q Consensus 56 k~ayr~l~~~~hPD~~~~~~~~~~i~~Ay~~L~dp~~R~~Y 96 (100)
.+|.+-+...+|||..+..+....+-+....|.-|..|..+
T Consensus 44 aeA~~CI~eLchp~~~~trE~i~~~F~~Lk~LA~p~y~dnf 84 (336)
T PRK09498 44 AKADRCLHEMLFADRAPTRERLTEIFFELKELACASQRDRF 84 (336)
T ss_pred HHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHhcCchhhhce
Confidence 35667777888999988877777777777778777776543
No 120
>COG3195 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=20.39 E-value=2.5e+02 Score=19.39 Aligned_cols=39 Identities=26% Similarity=0.401 Sum_probs=26.1
Q ss_pred CCCCCHHHHHHHHHHH-----------HHHhCCCCCCC---------------------------hHHHHHHHHHHH
Q 040219 47 EPTTMISEIKTVYRSL-----------VKVYHPDLSGN---------------------------GRDFTKIHNAYE 85 (100)
Q Consensus 47 ~~~a~~~eIk~ayr~l-----------~~~~hPD~~~~---------------------------~~~~~~i~~Ay~ 85 (100)
.+.++.+++..+.... +..-|||..+- .+.|..+|++|.
T Consensus 41 ~pf~s~~~l~~am~~~v~~A~~~~rl~liraHPdLAgk~a~a~elta~S~~EQasAGLd~Ls~~E~a~f~~LN~aY~ 117 (176)
T COG3195 41 RPFASAEGLHAAMCRAVRAASEEERLALIRAHPDLAGKAAIAGELTAESTSEQASAGLDRLSPEEFARFTELNAAYV 117 (176)
T ss_pred CCcCCHHHHHHHHHHHHHcCCHHHHHHHHHhChhhHHHHHHHHHhhhhhHHHHHhcCcccCCHHHHHHHHHHHHHHH
Confidence 5566777777666443 34569997641 246999999995
Done!