Query 040219
Match_columns 100
No_of_seqs 173 out of 1301
Neff 7.7
Searched_HMMs 29240
Date Mon Mar 25 09:41:04 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040219.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/040219hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2yua_A Williams-beuren syndrom 99.9 1.6E-23 5.6E-28 130.1 8.0 67 34-100 13-83 (99)
2 2dn9_A DNAJ homolog subfamily 99.9 3.7E-23 1.3E-27 123.4 7.3 65 35-99 4-72 (79)
3 2och_A Hypothetical protein DN 99.9 4.3E-23 1.5E-27 121.6 7.3 64 36-99 6-70 (73)
4 2ctp_A DNAJ homolog subfamily 99.9 4.6E-23 1.6E-27 122.8 6.9 65 35-99 4-71 (78)
5 1wjz_A 1700030A21RIK protein; 99.9 1.9E-23 6.6E-28 128.2 5.2 66 35-100 13-88 (94)
6 1hdj_A Human HSP40, HDJ-1; mol 99.9 8.4E-23 2.9E-27 121.4 7.6 63 37-99 2-67 (77)
7 2ctr_A DNAJ homolog subfamily 99.9 7.4E-23 2.5E-27 124.6 7.1 65 35-99 4-71 (88)
8 2ej7_A HCG3 gene; HCG3 protein 99.9 1E-22 3.5E-27 122.3 7.4 64 36-99 7-75 (82)
9 2cug_A Mkiaa0962 protein; DNAJ 99.9 1.4E-22 4.7E-27 123.4 7.8 65 35-99 14-81 (88)
10 2o37_A Protein SIS1; HSP40, J- 99.9 1.4E-22 4.9E-27 124.3 6.9 64 36-99 6-70 (92)
11 2ctq_A DNAJ homolog subfamily 99.9 1.6E-22 5.4E-27 128.1 6.4 65 35-99 17-85 (112)
12 2ctw_A DNAJ homolog subfamily 99.9 6.2E-22 2.1E-26 124.9 8.6 65 35-99 14-82 (109)
13 2dmx_A DNAJ homolog subfamily 99.9 2.7E-22 9.2E-27 122.9 5.9 64 36-99 7-75 (92)
14 2lgw_A DNAJ homolog subfamily 99.9 5.1E-22 1.8E-26 123.5 6.3 62 38-99 2-68 (99)
15 2l6l_A DNAJ homolog subfamily 99.9 5.7E-22 1.9E-26 131.6 6.2 65 35-99 7-81 (155)
16 2qsa_A DNAJ homolog DNJ-2; J-d 99.9 2.7E-22 9.4E-27 126.3 4.3 65 35-99 12-84 (109)
17 1bq0_A DNAJ, HSP40; chaperone, 99.9 3.7E-22 1.2E-26 124.7 4.2 63 37-99 2-68 (103)
18 1faf_A Large T antigen; J doma 99.8 3.3E-21 1.1E-25 115.4 3.5 62 36-97 9-72 (79)
19 3hho_A CO-chaperone protein HS 99.8 9.5E-21 3.3E-25 128.1 4.9 63 37-99 3-76 (174)
20 2ys8_A RAB-related GTP-binding 99.8 5.9E-21 2E-25 116.7 3.5 59 37-95 26-87 (90)
21 1gh6_A Large T antigen; tumor 99.8 6.5E-22 2.2E-26 125.9 -1.0 62 37-98 7-70 (114)
22 1fpo_A HSC20, chaperone protei 99.8 1.4E-20 4.9E-25 127.0 4.4 63 38-100 1-74 (171)
23 3bvo_A CO-chaperone protein HS 99.8 6E-20 2.1E-24 127.2 7.2 67 33-99 38-115 (207)
24 2pf4_E Small T antigen; PP2A, 99.8 1.4E-21 4.7E-26 132.3 -1.1 64 36-99 9-74 (174)
25 3apq_A DNAJ homolog subfamily 99.8 4.1E-20 1.4E-24 126.2 6.2 62 38-99 2-67 (210)
26 2guz_A Mitochondrial import in 99.8 6.2E-20 2.1E-24 107.8 3.0 57 37-93 13-70 (71)
27 3uo3_A J-type CO-chaperone JAC 99.8 1.5E-19 5.1E-24 123.0 3.8 65 36-100 9-81 (181)
28 3lz8_A Putative chaperone DNAJ 99.8 4.4E-20 1.5E-24 135.4 0.0 63 37-99 27-92 (329)
29 1iur_A KIAA0730 protein; DNAJ 99.8 1.8E-19 6.1E-24 109.9 2.4 61 34-94 12-77 (88)
30 1n4c_A Auxilin; four helix bun 99.7 6.4E-19 2.2E-23 119.9 1.2 59 38-96 117-182 (182)
31 3ag7_A Putative uncharacterize 99.7 3.7E-18 1.3E-22 107.3 2.9 55 36-91 39-104 (106)
32 2qwo_B Putative tyrosine-prote 99.7 1.6E-17 5.3E-22 102.0 2.3 52 38-89 33-91 (92)
33 3apo_A DNAJ homolog subfamily 99.7 9.9E-18 3.4E-22 132.3 1.1 65 35-99 18-86 (780)
34 2guz_B Mitochondrial import in 99.4 6.9E-13 2.3E-17 76.5 4.6 52 38-89 4-58 (65)
35 2y4t_A DNAJ homolog subfamily 99.3 3.8E-12 1.3E-16 91.9 4.7 61 38-98 382-449 (450)
36 2pzi_A Probable serine/threoni 93.7 0.051 1.7E-06 42.2 3.5 47 36-86 627-675 (681)
37 2b7e_A PRE-mRNA processing pro 65.5 11 0.00037 20.6 3.8 47 53-99 3-55 (59)
38 2d7l_A WD repeat and HMG-box D 57.4 11 0.00039 21.4 3.1 41 56-96 17-57 (81)
39 4a3n_A Transcription factor SO 56.9 20 0.00069 19.1 4.1 38 56-94 14-51 (71)
40 1qqr_A Streptokinase domain B; 54.2 7.7 0.00026 24.7 2.1 31 39-69 33-63 (138)
41 3f27_D Transcription factor SO 48.1 33 0.0011 18.9 4.4 38 56-94 18-55 (83)
42 1uzc_A Hypothetical protein FL 46.4 37 0.0013 18.9 4.5 49 49-97 11-63 (71)
43 1ckt_A High mobility group 1 p 46.3 33 0.0011 18.2 4.2 37 58-94 15-52 (71)
44 1wgf_A Upstream binding factor 45.7 30 0.001 19.6 3.7 38 57-95 33-70 (90)
45 3nm9_A HMG-D, high mobility gr 45.3 35 0.0012 18.4 4.0 37 56-96 15-51 (73)
46 1i11_A Transcription factor SO 45.0 33 0.0011 18.9 3.8 40 57-97 17-56 (81)
47 2cqn_A Formin-binding protein 42.6 39 0.0013 19.0 3.8 48 50-98 6-60 (77)
48 2crj_A SWI/SNF-related matrix- 42.3 46 0.0016 18.8 4.5 38 57-95 20-57 (92)
49 2eqz_A High mobility group pro 41.9 37 0.0013 19.0 3.7 38 56-93 27-65 (86)
50 1wz6_A HMG-box transcription f 40.8 45 0.0015 18.3 4.4 37 56-93 19-55 (82)
51 1ug2_A 2610100B20RIK gene prod 39.7 21 0.00071 21.3 2.3 22 49-70 67-88 (95)
52 2lxi_A RNA-binding protein 10; 39.6 25 0.00086 19.6 2.7 21 43-63 6-26 (91)
53 1vq8_S 50S ribosomal protein L 39.6 22 0.00074 20.6 2.4 21 43-63 26-46 (85)
54 2yrq_A High mobility group pro 39.1 51 0.0018 20.9 4.5 39 56-94 27-66 (173)
55 1hme_A High mobility group pro 38.5 48 0.0016 17.9 4.5 37 57-94 19-55 (77)
56 2e6o_A HMG box-containing prot 37.7 52 0.0018 18.4 3.9 37 56-93 29-65 (87)
57 3r8s_T 50S ribosomal protein L 37.5 24 0.00082 20.8 2.4 20 43-62 31-50 (93)
58 1hry_A Human SRY; DNA, DNA-bin 37.2 50 0.0017 17.8 4.3 37 56-93 16-52 (76)
59 2cs1_A PMS1 protein homolog 1; 36.6 46 0.0016 18.8 3.6 38 56-94 19-56 (92)
60 3j21_T 50S ribosomal protein L 36.5 26 0.00089 20.4 2.4 21 43-63 27-47 (86)
61 2zjr_Q 50S ribosomal protein L 36.3 25 0.00087 20.8 2.4 21 43-63 26-46 (95)
62 3tve_T 50S ribosomal protein L 34.8 28 0.00097 20.4 2.4 20 43-62 25-44 (92)
63 2lef_A LEF-1 HMG, protein (lym 33.8 46 0.0016 18.5 3.2 36 57-93 15-50 (86)
64 1gt0_D Transcription factor SO 33.3 42 0.0014 18.3 3.0 36 57-93 15-50 (80)
65 1k99_A Upstream binding factor 32.4 74 0.0025 18.3 5.0 38 57-95 23-60 (99)
66 1iqt_A AUF1, heterogeneous nuc 31.9 42 0.0014 17.4 2.7 20 44-63 5-24 (75)
67 1aab_A High mobility group pro 30.8 30 0.001 19.2 2.0 38 57-94 20-58 (83)
68 1j46_A SRY, sex-determining re 30.4 55 0.0019 18.1 3.2 37 56-93 16-52 (85)
69 2co9_A Thymus high mobility gr 30.3 54 0.0018 19.0 3.2 37 57-94 30-66 (102)
70 3tmm_A Transcription factor A, 29.4 76 0.0026 21.4 4.2 40 56-96 53-92 (238)
71 3tq6_A Transcription factor A, 29.0 82 0.0028 20.9 4.3 39 57-96 22-60 (214)
72 2xpn_B SPT6, chromatin structu 27.5 14 0.00048 16.5 0.1 10 39-48 4-13 (26)
73 2gzk_A Sex-determining region 26.8 1.1E+02 0.0038 18.9 4.4 36 59-95 19-54 (159)
74 1r5q_A KAI A, circadian oscill 26.6 1.1E+02 0.0037 18.3 4.0 21 53-73 12-32 (102)
75 3u2b_C Transcription factor SO 26.4 83 0.0028 16.9 4.0 37 56-93 14-50 (79)
76 2hzc_A Splicing factor U2AF 65 25.5 62 0.0021 17.2 2.7 21 43-63 11-31 (87)
77 4euw_A Transcription factor SO 23.2 94 0.0032 18.1 3.4 38 56-94 41-78 (106)
78 3b0c_W CENP-W, centromere prot 22.8 1E+02 0.0035 16.9 3.3 29 58-86 9-37 (76)
79 2mss_A Protein (musashi1); RNA 22.4 55 0.0019 17.0 2.0 19 44-62 5-23 (75)
80 3bbz_A P protein, phosphoprote 21.7 70 0.0024 16.7 2.2 23 77-99 5-27 (49)
81 3u5e_X 60S ribosomal protein L 21.5 63 0.0022 20.6 2.4 19 45-63 85-103 (142)
82 1q38_A Fibronectin; amyloid fi 21.4 48 0.0017 19.3 1.7 16 36-51 35-50 (89)
83 2lr8_A CAsp8-associated protei 26.7 20 0.00069 20.2 0.0 31 40-70 38-68 (70)
84 1v2z_A Circadian clock protein 21.2 1.3E+02 0.0045 18.2 3.6 21 52-72 18-38 (111)
85 3ioz_B T-cell surface glycopro 21.1 36 0.0012 17.4 1.0 14 83-97 23-36 (45)
86 2dnp_A RNA-binding protein 14; 20.8 86 0.0029 16.9 2.7 20 43-62 14-33 (90)
87 1r4v_A Hypothetical protein AQ 20.0 1.6E+02 0.0054 19.3 4.1 29 55-83 138-166 (171)
No 1
>2yua_A Williams-beuren syndrome chromosome region 18 protein; J domain, all helix protein, chaperone, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.89 E-value=1.6e-23 Score=130.07 Aligned_cols=67 Identities=31% Similarity=0.522 Sum_probs=61.8
Q ss_pred CCCccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCCC----hHHHHHHHHHHHHhCChhHHHHhhccC
Q 040219 34 PGTGGSLYEVLRIEPTTMISEIKTVYRSLVKVYHPDLSGN----GRDFTKIHNAYETLSDPKARVVYDMSL 100 (100)
Q Consensus 34 ~~~~~~~y~iLgv~~~a~~~eIk~ayr~l~~~~hPD~~~~----~~~~~~i~~Ay~~L~dp~~R~~Yd~~l 100 (100)
.....|||+||||+++++.++||++|+++++++|||++++ .+.|+.|++||++|+||.+|..||+.|
T Consensus 13 ~~~~~~~Y~vLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~YD~~l 83 (99)
T 2yua_A 13 SYSRTALYDLLGVPSTATQAQIKAAYYRQCFLYHPDRNSGSAEAAERFTRISQAYVVLGSATLRRKYDRGL 83 (99)
T ss_dssp SSCSSHHHHHHTCCTTCCHHHHHHHHHHHHHHSCTTTCSSCSHHHHHHHHHHHHHHHTTSHHHHHHHHHTC
T ss_pred CCCccCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHhc
Confidence 3456899999999999999999999999999999999874 678999999999999999999999865
No 2
>2dn9_A DNAJ homolog subfamily A member 3; J-domain, TID1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.89 E-value=3.7e-23 Score=123.39 Aligned_cols=65 Identities=37% Similarity=0.650 Sum_probs=60.6
Q ss_pred CCccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCCC----hHHHHHHHHHHHHhCChhHHHHhhcc
Q 040219 35 GTGGSLYEVLRIEPTTMISEIKTVYRSLVKVYHPDLSGN----GRDFTKIHNAYETLSDPKARVVYDMS 99 (100)
Q Consensus 35 ~~~~~~y~iLgv~~~a~~~eIk~ayr~l~~~~hPD~~~~----~~~~~~i~~Ay~~L~dp~~R~~Yd~~ 99 (100)
....|||+||||+++++.++||++|+++++++|||++++ .+.|+.|++||++|+||.+|..||..
T Consensus 4 ~~~~~~y~iLgv~~~a~~~~Ik~ayr~l~~~~HPD~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~YD~~ 72 (79)
T 2dn9_A 4 GSSGDYYQILGVPRNASQKEIKKAYYQLAKKYHPDTNKDDPKAKEKFSQLAEAYEVLSDEVKRKQYDAY 72 (79)
T ss_dssp SCCSCHHHHHTCCTTCCHHHHHHHHHHHHHHTCTTTCSSCTTHHHHHHHHHHHHHHHHSHHHHHHHHHS
T ss_pred CCCCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHhc
Confidence 346899999999999999999999999999999999875 57899999999999999999999975
No 3
>2och_A Hypothetical protein DNJ-12; HSP40, J-domain, chaperone, APC90013.2, structural genomics, protein structure initiative; 1.86A {Caenorhabditis elegans} PDB: 2lo1_A
Probab=99.89 E-value=4.3e-23 Score=121.59 Aligned_cols=64 Identities=36% Similarity=0.667 Sum_probs=60.3
Q ss_pred CccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCCC-hHHHHHHHHHHHHhCChhHHHHhhcc
Q 040219 36 TGGSLYEVLRIEPTTMISEIKTVYRSLVKVYHPDLSGN-GRDFTKIHNAYETLSDPKARVVYDMS 99 (100)
Q Consensus 36 ~~~~~y~iLgv~~~a~~~eIk~ayr~l~~~~hPD~~~~-~~~~~~i~~Ay~~L~dp~~R~~Yd~~ 99 (100)
...|||+||||+++++.++||++|+++++++|||++++ .+.|+.|++||++|+||.+|..||..
T Consensus 6 ~~~~~y~iLgl~~~a~~~eIk~ayr~l~~~~HPD~~~~~~~~f~~i~~Ay~~L~d~~~R~~YD~~ 70 (73)
T 2och_A 6 KETGYYDVLGVKPDASDNELKKAYRKMALKFHPDKNPDGAEQFKQISQAYEVLSDEKKRQIYDQG 70 (73)
T ss_dssp CCCCHHHHHTCCTTCCHHHHHHHHHHHHHHTCTTTCTTCHHHHHHHHHHHHHHTSHHHHHHHHHT
T ss_pred CCCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCcCHHHHHHHHHHHHHHHCCHHHHHHHHhc
Confidence 35799999999999999999999999999999999886 68999999999999999999999974
No 4
>2ctp_A DNAJ homolog subfamily B member 12; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.88 E-value=4.6e-23 Score=122.80 Aligned_cols=65 Identities=34% Similarity=0.606 Sum_probs=60.5
Q ss_pred CCccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCCC---hHHHHHHHHHHHHhCChhHHHHhhcc
Q 040219 35 GTGGSLYEVLRIEPTTMISEIKTVYRSLVKVYHPDLSGN---GRDFTKIHNAYETLSDPKARVVYDMS 99 (100)
Q Consensus 35 ~~~~~~y~iLgv~~~a~~~eIk~ayr~l~~~~hPD~~~~---~~~~~~i~~Ay~~L~dp~~R~~Yd~~ 99 (100)
....|||+||||+++++.++||++|+++++++|||+++. .+.|+.|++||++|+||.+|..||+.
T Consensus 4 ~~~~~~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~~~~f~~i~~Ay~~L~d~~~R~~YD~~ 71 (78)
T 2ctp_A 4 GSSGDYYEILGVSRGASDEDLKKAYRRLALKFHPDKNHAPGATEAFKAIGTAYAVLSNPEKRKQYDQF 71 (78)
T ss_dssp SCSCCHHHHHTCCTTCCHHHHHHHHHHHHTTSCTTTCSSHHHHHHHHHHHHHHHHHTSHHHHHHHHHT
T ss_pred CCCCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCccHHHHHHHHHHHHHHHCCHHHHHHHHHc
Confidence 346899999999999999999999999999999999865 56899999999999999999999975
No 5
>1wjz_A 1700030A21RIK protein; J-domain, DNAJ like protein, structural genomics, riken structural genomics/proteomics initiative, RSGI, chaperone; NMR {Mus musculus} SCOP: a.2.3.1
Probab=99.88 E-value=1.9e-23 Score=128.24 Aligned_cols=66 Identities=26% Similarity=0.555 Sum_probs=60.7
Q ss_pred CCccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCCC----------hHHHHHHHHHHHHhCChhHHHHhhccC
Q 040219 35 GTGGSLYEVLRIEPTTMISEIKTVYRSLVKVYHPDLSGN----------GRDFTKIHNAYETLSDPKARVVYDMSL 100 (100)
Q Consensus 35 ~~~~~~y~iLgv~~~a~~~eIk~ayr~l~~~~hPD~~~~----------~~~~~~i~~Ay~~L~dp~~R~~Yd~~l 100 (100)
....|||+||||+++++.++||++|+++++++|||+++. .+.|++|++||++|+||.+|..||..|
T Consensus 13 ~~~~~~y~iLgv~~~as~~eIk~aYr~l~~~~HPDk~~~~~~~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~YD~~l 88 (94)
T 1wjz_A 13 TLKKDWYSILGADPSANMSDLKQKYQKLILLYHPDKQSADVPAGTMEECMQKFIEIDQAWKILGNEETKKKYDLQR 88 (94)
T ss_dssp SSCSCHHHHTTCCTTCCHHHHHHHHHHTTSSSCSTTCCTTCCHHHHHHHHHHHHHHHHHHHHHSSSSHHHHHHHHS
T ss_pred CCCCChHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCCChhhhHHHHHHHHHHHHHHHHHCCHHHHHHHHHHc
Confidence 356899999999999999999999999999999999763 468999999999999999999999864
No 6
>1hdj_A Human HSP40, HDJ-1; molecular chaperone; NMR {Homo sapiens} SCOP: a.2.3.1
Probab=99.88 E-value=8.4e-23 Score=121.40 Aligned_cols=63 Identities=35% Similarity=0.611 Sum_probs=59.1
Q ss_pred ccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCCC---hHHHHHHHHHHHHhCChhHHHHhhcc
Q 040219 37 GGSLYEVLRIEPTTMISEIKTVYRSLVKVYHPDLSGN---GRDFTKIHNAYETLSDPKARVVYDMS 99 (100)
Q Consensus 37 ~~~~y~iLgv~~~a~~~eIk~ayr~l~~~~hPD~~~~---~~~~~~i~~Ay~~L~dp~~R~~Yd~~ 99 (100)
..|||+||||+++++.++||++|+++++++|||++++ .+.|+.|++||++|+||.+|..||+.
T Consensus 2 ~~~~y~iLgv~~~as~~~Ik~ayr~l~~~~HPD~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~Yd~~ 67 (77)
T 1hdj_A 2 GKDYYQTLGLARGASDEEIKRAYRRQALRYHPDKNKEPGAEEKFKEIAEAYDVLSDPRKREIFDRY 67 (77)
T ss_dssp CCCSHHHHTCCTTCCHHHHHHHHHHHHHTTCTTTCCCTTHHHHHHHHHHHHHHTTCHHHHHHHHHT
T ss_pred CCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCccHHHHHHHHHHHHHHHCCHHHHHHHHHH
Confidence 3689999999999999999999999999999999864 57899999999999999999999975
No 7
>2ctr_A DNAJ homolog subfamily B member 9; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.88 E-value=7.4e-23 Score=124.60 Aligned_cols=65 Identities=37% Similarity=0.637 Sum_probs=60.7
Q ss_pred CCccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCCC---hHHHHHHHHHHHHhCChhHHHHhhcc
Q 040219 35 GTGGSLYEVLRIEPTTMISEIKTVYRSLVKVYHPDLSGN---GRDFTKIHNAYETLSDPKARVVYDMS 99 (100)
Q Consensus 35 ~~~~~~y~iLgv~~~a~~~eIk~ayr~l~~~~hPD~~~~---~~~~~~i~~Ay~~L~dp~~R~~Yd~~ 99 (100)
....|||+||||+++++.++||++|+++++++|||+++. .+.|+.|++||++|+||.+|..||..
T Consensus 4 ~~~~~~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~a~~~f~~i~~Ay~~L~d~~~R~~Yd~~ 71 (88)
T 2ctr_A 4 GSSGSYYDILGVPKSASERQIKKAFHKLAMKYHPDKNKSPDAEAKFREIAEAYETLSDANRRKEYDTL 71 (88)
T ss_dssp CCCCSHHHHHTCCTTCCHHHHHHHHHHHHHHTCTTTCCSHHHHHHHHHHHHHHHHHHSSHHHHHHHHT
T ss_pred CCCCCHHHHcCcCCCCCHHHHHHHHHHHHHHHCcCCCCChHHHHHHHHHHHHHHHHCCHHHHHHHHHh
Confidence 346899999999999999999999999999999999986 56899999999999999999999975
No 8
>2ej7_A HCG3 gene; HCG3 protein, DNAJ domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.88 E-value=1e-22 Score=122.27 Aligned_cols=64 Identities=38% Similarity=0.564 Sum_probs=59.8
Q ss_pred CccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCCC-----hHHHHHHHHHHHHhCChhHHHHhhcc
Q 040219 36 TGGSLYEVLRIEPTTMISEIKTVYRSLVKVYHPDLSGN-----GRDFTKIHNAYETLSDPKARVVYDMS 99 (100)
Q Consensus 36 ~~~~~y~iLgv~~~a~~~eIk~ayr~l~~~~hPD~~~~-----~~~~~~i~~Ay~~L~dp~~R~~Yd~~ 99 (100)
...|||+||||+++++.++||++|+++++++|||++++ .+.|+.|++||++|+||.+|..||..
T Consensus 7 ~~~~~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~YD~~ 75 (82)
T 2ej7_A 7 GMVDYYEVLDVPRQASSEAIKKAYRKLALKWHPDKNPENKEEAERRFKQVAEAYEVLSDAKKRDIYDRY 75 (82)
T ss_dssp SSCCHHHHTTCCTTCCHHHHHHHHHHHHTTSCTTTCSTTHHHHHHHHHHHHHHHHHHSSTTHHHHHHHT
T ss_pred CCcCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHHHCCHHHHHHHHHc
Confidence 45899999999999999999999999999999999876 35899999999999999999999975
No 9
>2cug_A Mkiaa0962 protein; DNAJ-like domain, structural genomics, molecular chaperone, NPPSFA; NMR {Mus musculus}
Probab=99.88 E-value=1.4e-22 Score=123.39 Aligned_cols=65 Identities=32% Similarity=0.528 Sum_probs=60.4
Q ss_pred CCccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCCC---hHHHHHHHHHHHHhCChhHHHHhhcc
Q 040219 35 GTGGSLYEVLRIEPTTMISEIKTVYRSLVKVYHPDLSGN---GRDFTKIHNAYETLSDPKARVVYDMS 99 (100)
Q Consensus 35 ~~~~~~y~iLgv~~~a~~~eIk~ayr~l~~~~hPD~~~~---~~~~~~i~~Ay~~L~dp~~R~~Yd~~ 99 (100)
....|||+||||+++++.++||++|+++++++|||++++ .+.|+.|++||++|+||.+|..||..
T Consensus 14 ~~~~d~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~~~~f~~i~~Ay~~L~d~~~R~~YD~~ 81 (88)
T 2cug_A 14 ALDFDPYRVLGVSRTASQADIKKAYKKLAREWHPDKNKDPGAEDRFIQISKAYEILSNEEKRTNYDHY 81 (88)
T ss_dssp SSSSCHHHHHTCCTTCCHHHHHHHHHHHHHHSCTTTCCSTTHHHHHHHHHHHHHHHHSHHHHHHHHHH
T ss_pred cCCCCHHHHcCcCCCCCHHHHHHHHHHHHHHHCcCCCCChhHHHHHHHHHHHHHHHCCHHHHHHHHHc
Confidence 356899999999999999999999999999999999874 57899999999999999999999974
No 10
>2o37_A Protein SIS1; HSP40, J-domain, cochaperone, APC90055.5, structural genomics, PSI-2, protein structure initiative; 1.25A {Saccharomyces cerevisiae}
Probab=99.87 E-value=1.4e-22 Score=124.28 Aligned_cols=64 Identities=34% Similarity=0.639 Sum_probs=59.9
Q ss_pred CccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCC-ChHHHHHHHHHHHHhCChhHHHHhhcc
Q 040219 36 TGGSLYEVLRIEPTTMISEIKTVYRSLVKVYHPDLSG-NGRDFTKIHNAYETLSDPKARVVYDMS 99 (100)
Q Consensus 36 ~~~~~y~iLgv~~~a~~~eIk~ayr~l~~~~hPD~~~-~~~~~~~i~~Ay~~L~dp~~R~~Yd~~ 99 (100)
...|||+||||+++++.++||++|+++++++|||+++ +.+.|++|++||++|+||.+|..||..
T Consensus 6 ~~~~~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~~f~~i~~Ay~~L~d~~~R~~YD~~ 70 (92)
T 2o37_A 6 KETKLYDLLGVSPSANEQELKKGYRKAALKYHPDKPTGDTEKFKEISEAFEILNDPQKREIYDQY 70 (92)
T ss_dssp SCCHHHHHHTCCTTCCHHHHHHHHHHHHHHHCTTSTTCCHHHHHHHHHHHHHHTSHHHHHHHHHH
T ss_pred cCCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCChHHHHHHHHHHHHHHCCHHHHHHHHHH
Confidence 3579999999999999999999999999999999985 477999999999999999999999974
No 11
>2ctq_A DNAJ homolog subfamily C member 12; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.87 E-value=1.6e-22 Score=128.12 Aligned_cols=65 Identities=22% Similarity=0.344 Sum_probs=60.7
Q ss_pred CCccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCCC----hHHHHHHHHHHHHhCChhHHHHhhcc
Q 040219 35 GTGGSLYEVLRIEPTTMISEIKTVYRSLVKVYHPDLSGN----GRDFTKIHNAYETLSDPKARVVYDMS 99 (100)
Q Consensus 35 ~~~~~~y~iLgv~~~a~~~eIk~ayr~l~~~~hPD~~~~----~~~~~~i~~Ay~~L~dp~~R~~Yd~~ 99 (100)
....|||+||||+++++.++||++|+++++++|||++++ .+.|++|++||++|+||.+|..||+.
T Consensus 17 ~~~~d~Y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~a~~~f~~i~~Ay~vL~d~~~R~~YD~~ 85 (112)
T 2ctq_A 17 EDTEDYYTLLGCDELSSVEQILAEFKVRALECHPDKHPENPKAVETFQKLQKAKEILTNEESRARYDHW 85 (112)
T ss_dssp CCCCCHHHHTTCCTTSCHHHHHHHHHHHHHTTCTTTCTTCSTHHHHHHHHHHHHHHHHSHHHHHHHHHH
T ss_pred cCCCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHHCCHHHHHHHHHh
Confidence 346899999999999999999999999999999999885 67999999999999999999999974
No 12
>2ctw_A DNAJ homolog subfamily C member 5; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.87 E-value=6.2e-22 Score=124.89 Aligned_cols=65 Identities=37% Similarity=0.621 Sum_probs=60.5
Q ss_pred CCccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCCC----hHHHHHHHHHHHHhCChhHHHHhhcc
Q 040219 35 GTGGSLYEVLRIEPTTMISEIKTVYRSLVKVYHPDLSGN----GRDFTKIHNAYETLSDPKARVVYDMS 99 (100)
Q Consensus 35 ~~~~~~y~iLgv~~~a~~~eIk~ayr~l~~~~hPD~~~~----~~~~~~i~~Ay~~L~dp~~R~~Yd~~ 99 (100)
....++|+||||+++++.++||++|+++++++|||++++ .+.|+.|++||++|+||.+|..||..
T Consensus 14 ~~~~~~Y~vLgv~~~as~~eIk~aYr~la~~~HPDk~~~~~~a~~~f~~i~~Ay~vL~d~~~R~~YD~~ 82 (109)
T 2ctw_A 14 TSGESLYHVLGLDKNATSDDIKKSYRKLALKYHPDKNPDNPEAADKFKEINNAHAILTDATKRNIYDKY 82 (109)
T ss_dssp SCSCCHHHHHTCCTTCCHHHHHHHHHHHHHHSCTTTSTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHT
T ss_pred CCCCCHHHHcCcCCCCCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHHcCHHHHHHHHHh
Confidence 345899999999999999999999999999999999985 56899999999999999999999974
No 13
>2dmx_A DNAJ homolog subfamily B member 8; DNAJ J domain, helix-turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.86 E-value=2.7e-22 Score=122.88 Aligned_cols=64 Identities=36% Similarity=0.620 Sum_probs=59.7
Q ss_pred CccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCCC-----hHHHHHHHHHHHHhCChhHHHHhhcc
Q 040219 36 TGGSLYEVLRIEPTTMISEIKTVYRSLVKVYHPDLSGN-----GRDFTKIHNAYETLSDPKARVVYDMS 99 (100)
Q Consensus 36 ~~~~~y~iLgv~~~a~~~eIk~ayr~l~~~~hPD~~~~-----~~~~~~i~~Ay~~L~dp~~R~~Yd~~ 99 (100)
...|||+||||+++++.++||++|+++++++|||+++. .+.|+.|++||++|+||.+|..||+.
T Consensus 7 ~~~~~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~Yd~~ 75 (92)
T 2dmx_A 7 GMANYYEVLGVQASASPEDIKKAYRKLALRWHPDKNPDNKEEAEKKFKLVSEAYEVLSDSKKRSLYDRA 75 (92)
T ss_dssp CCCCHHHHHTCCTTCCTTHHHHHHHHHHHHTCTTTCSSCSHHHHHHHHHHHHHHHHHHSHHHHHHHHHH
T ss_pred CCcCHHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCCccHHHHHHHHHHHHHHHHHHCCHHHHHHHHHh
Confidence 45799999999999999999999999999999999875 46899999999999999999999974
No 14
>2lgw_A DNAJ homolog subfamily B member 2; J domain, HSJ1A, CO-chaperon, chaperone; NMR {Homo sapiens}
Probab=99.86 E-value=5.1e-22 Score=123.48 Aligned_cols=62 Identities=34% Similarity=0.617 Sum_probs=58.3
Q ss_pred cCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCCC-----hHHHHHHHHHHHHhCChhHHHHhhcc
Q 040219 38 GSLYEVLRIEPTTMISEIKTVYRSLVKVYHPDLSGN-----GRDFTKIHNAYETLSDPKARVVYDMS 99 (100)
Q Consensus 38 ~~~y~iLgv~~~a~~~eIk~ayr~l~~~~hPD~~~~-----~~~~~~i~~Ay~~L~dp~~R~~Yd~~ 99 (100)
.|||+||||+++++.++||++|+++++++|||++++ .+.|+.|++||++|+||.+|..||..
T Consensus 2 ~d~Y~iLgv~~~as~~eIk~aYr~la~~~HPDk~~~~~~~a~~~f~~I~~AY~vL~d~~~R~~YD~~ 68 (99)
T 2lgw_A 2 ASYYEILDVPRSASADDIKKAYRRKALQWHPDKNPDNKEFAEKKFKEVAEAYEVLSDKHKREIYDRY 68 (99)
T ss_dssp CCHHHHSSSCTTSCHHHHHHHHHHHHHHTSTTTCCSCCHHHHHHHHHHHHHHHHHHSHHHHHHHHHH
T ss_pred CCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCccHHHHHHHHHHHHHHHHHHCCHHHHHHHHHh
Confidence 589999999999999999999999999999999875 46899999999999999999999964
No 15
>2l6l_A DNAJ homolog subfamily C member 24; DPH4, Zn-CSL, J-domain, chaperone; NMR {Homo sapiens}
Probab=99.85 E-value=5.7e-22 Score=131.58 Aligned_cols=65 Identities=28% Similarity=0.596 Sum_probs=60.0
Q ss_pred CCccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCCCh----------HHHHHHHHHHHHhCChhHHHHhhcc
Q 040219 35 GTGGSLYEVLRIEPTTMISEIKTVYRSLVKVYHPDLSGNG----------RDFTKIHNAYETLSDPKARVVYDMS 99 (100)
Q Consensus 35 ~~~~~~y~iLgv~~~a~~~eIk~ayr~l~~~~hPD~~~~~----------~~~~~i~~Ay~~L~dp~~R~~Yd~~ 99 (100)
....|||+||||+++++.++||++|+++++++|||++++. +.|..|++||++|+||.+|+.||..
T Consensus 7 ~~~~~~y~iLgv~~~a~~~eIk~aYr~l~~~~HPDk~~~~~~~~~~~~a~~~f~~i~~Ay~~L~dp~~R~~Yd~~ 81 (155)
T 2l6l_A 7 MPKKDWYSILGADPSANISDLKQKYQKLILMYHPDKQSTDVPAGTVEECVQKFIEIDQAWKILGNEETKREYDLQ 81 (155)
T ss_dssp CCCSHHHHHHTCCTTCCHHHHHHHHHHHHHHHSCCCCCCCCTTHHHHHHHHHHHHHHHHHHHSSSHHHHCHHHHH
T ss_pred CCCCChhHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCCchhHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 3468999999999999999999999999999999998752 6899999999999999999999964
No 16
>2qsa_A DNAJ homolog DNJ-2; J-domain, HSP40, APC90001.8, structural genomics, PSI-2, Pro structure initiative; 1.68A {Caenorhabditis elegans}
Probab=99.85 E-value=2.7e-22 Score=126.31 Aligned_cols=65 Identities=32% Similarity=0.475 Sum_probs=60.5
Q ss_pred CCccCcccccccCCCC-CHHHHHHHHHHHHHHhCCCCCCC-------hHHHHHHHHHHHHhCChhHHHHhhcc
Q 040219 35 GTGGSLYEVLRIEPTT-MISEIKTVYRSLVKVYHPDLSGN-------GRDFTKIHNAYETLSDPKARVVYDMS 99 (100)
Q Consensus 35 ~~~~~~y~iLgv~~~a-~~~eIk~ayr~l~~~~hPD~~~~-------~~~~~~i~~Ay~~L~dp~~R~~Yd~~ 99 (100)
....|||+||||++++ +.++||++|+++++++|||++++ .+.|++|++||++|+||.+|..||..
T Consensus 12 ~~~~~~y~iLgv~~~a~s~~eIk~aYr~l~~~~HPDk~~~~~~~~~a~~~f~~i~~AY~~L~d~~~R~~YD~~ 84 (109)
T 2qsa_A 12 CGLENCYDVLEVNREEFDKQKLAKAYRALARKHHPDRVKNKEEKLLAEERFRVIATAYETLKDDEAKTNYDYY 84 (109)
T ss_dssp TTTSCHHHHTTCCGGGCCHHHHHHHHHHHHHHTCGGGCCSHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHH
T ss_pred cCCCCHHHHcCCCCCCCCHHHHHHHHHHHHHHHCcCCCCCccccHHHHHHHHHHHHHHHHHCCHHHHHHHHHh
Confidence 3468999999999999 99999999999999999999876 56899999999999999999999974
No 17
>1bq0_A DNAJ, HSP40; chaperone, heat shock, protein folding, DNAK; NMR {Escherichia coli} SCOP: a.2.3.1 PDB: 1xbl_A 1bqz_A
Probab=99.85 E-value=3.7e-22 Score=124.68 Aligned_cols=63 Identities=35% Similarity=0.613 Sum_probs=59.1
Q ss_pred ccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCCC----hHHHHHHHHHHHHhCChhHHHHhhcc
Q 040219 37 GGSLYEVLRIEPTTMISEIKTVYRSLVKVYHPDLSGN----GRDFTKIHNAYETLSDPKARVVYDMS 99 (100)
Q Consensus 37 ~~~~y~iLgv~~~a~~~eIk~ayr~l~~~~hPD~~~~----~~~~~~i~~Ay~~L~dp~~R~~Yd~~ 99 (100)
..|||+||||+++++.++||++|+++++++|||++++ .+.|++|++||++|+||.+|..||..
T Consensus 2 ~~~~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~YD~~ 68 (103)
T 1bq0_A 2 KQDYYEILGVSKTAEEREIRKAYKRLAMKYHPDRNQGDKEAEAKFKEIKEAYEVLTDSQKRAAYDQY 68 (103)
T ss_dssp CCCSTTTTSSCSSCCHHHHHHHHHHHHTTTCTTTCTTTCTHHHHHHHHTTTTTSTTCSHHHHHTTTS
T ss_pred CCCHHHHcCcCCCCCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHHCCHHHHHHHHHH
Confidence 3799999999999999999999999999999999874 56899999999999999999999975
No 18
>1faf_A Large T antigen; J domain, HPD motif, anti-parallel hairpin of helices, viral protein; NMR {Murine polyomavirus} SCOP: a.2.3.1
Probab=99.82 E-value=3.3e-21 Score=115.39 Aligned_cols=62 Identities=15% Similarity=0.298 Sum_probs=58.3
Q ss_pred CccCcccccccCCC--CCHHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHhCChhHHHHhh
Q 040219 36 TGGSLYEVLRIEPT--TMISEIKTVYRSLVKVYHPDLSGNGRDFTKIHNAYETLSDPKARVVYD 97 (100)
Q Consensus 36 ~~~~~y~iLgv~~~--a~~~eIk~ayr~l~~~~hPD~~~~~~~~~~i~~Ay~~L~dp~~R~~Yd 97 (100)
...++|+||||+++ ++.++||++||++++++|||++++.+.|++|++||++|+|+.+|..++
T Consensus 9 ~~~~~y~iLgl~~~~~a~~~eIk~aYr~la~~~HPDk~~~~~~f~~i~~AYe~L~~~~~r~~~~ 72 (79)
T 1faf_A 9 DKERLLELLKLPRQLWGDFGRMQQAYKQQSLLLHPDKGGSHALMQELNSLWGTFKTEVYNLRMN 72 (79)
T ss_dssp HHHHHHHHHTCCSSSTTCHHHHHHHHHHHHHHSSGGGSCCHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred hHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCCCHHHHHHHHHHHHHHhhHHHHHHHh
Confidence 34689999999999 999999999999999999999999999999999999999999998764
No 19
>3hho_A CO-chaperone protein HSCB homolog; structural genomics, IDP01304, center for structural genomics of infectious diseases, CSGI; 2.15A {Vibrio cholerae}
Probab=99.81 E-value=9.5e-21 Score=128.12 Aligned_cols=63 Identities=29% Similarity=0.435 Sum_probs=57.7
Q ss_pred ccCcccccccCCCCC--HHHHHHHHHHHHHHhCCCCCCC---------hHHHHHHHHHHHHhCChhHHHHhhcc
Q 040219 37 GGSLYEVLRIEPTTM--ISEIKTVYRSLVKVYHPDLSGN---------GRDFTKIHNAYETLSDPKARVVYDMS 99 (100)
Q Consensus 37 ~~~~y~iLgv~~~a~--~~eIk~ayr~l~~~~hPD~~~~---------~~~~~~i~~Ay~~L~dp~~R~~Yd~~ 99 (100)
..|||+||||+++++ ..+||++|+++++++|||++++ .+.|..|++||++|+||.+|..||..
T Consensus 3 ~~d~Y~iLgl~~~a~id~~eIk~aYr~l~~~~HPDk~~~~~~~e~~~a~~~f~~In~AY~vL~dp~~R~~Yd~~ 76 (174)
T 3hho_A 3 AMNYFELFGLPIQFELDGSLLSSQFRALQKRFHPDNFATASERDRLMAVQQAAQINDAYQTLKDPLRRAEYLLS 76 (174)
T ss_dssp -CCHHHHTTCCSSSCCCHHHHHHHHHHHHHHHCGGGSTTSCHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHH
T ss_pred CCCHHHHcCcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCcHHHHHHHHHHHHHHHHHHHHHcChHHHHHHHHH
Confidence 579999999999987 9999999999999999999874 25799999999999999999999975
No 20
>2ys8_A RAB-related GTP-binding protein RABJ; DNAJ domain, RAS-associated protein RAP1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.81 E-value=5.9e-21 Score=116.71 Aligned_cols=59 Identities=22% Similarity=0.337 Sum_probs=54.6
Q ss_pred ccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCCC---hHHHHHHHHHHHHhCChhHHHH
Q 040219 37 GGSLYEVLRIEPTTMISEIKTVYRSLVKVYHPDLSGN---GRDFTKIHNAYETLSDPKARVV 95 (100)
Q Consensus 37 ~~~~y~iLgv~~~a~~~eIk~ayr~l~~~~hPD~~~~---~~~~~~i~~Ay~~L~dp~~R~~ 95 (100)
..|||+||||+++++.++||++|+++++++|||++++ .+.|++|++||++|+||.+|..
T Consensus 26 ~~~~y~iLgv~~~as~~eIk~aYr~la~~~HPDk~~~~~~~~~f~~i~~Ay~~L~d~~~R~~ 87 (90)
T 2ys8_A 26 SKDSWDMLGVKPGASRDEVNKAYRKLAVLLHPDKCVAPGSEDAFKAVVNARTALLKNIKSGP 87 (90)
T ss_dssp CSSHHHHHTCCTTCCHHHHHHHHHHHHHHHCTTTCCCTTHHHHHHHHHHHHHHHHHHHCCSC
T ss_pred CCCHHHHcCcCCCCCHHHHHHHHHHHHHHHCcCCCCCccHHHHHHHHHHHHHHHCCcccccC
Confidence 4899999999999999999999999999999999853 6799999999999999998753
No 21
>1gh6_A Large T antigen; tumor suppressor, oncoprotein, antitumor protein; 3.20A {Simian virus 40} SCOP: a.2.3.1
Probab=99.81 E-value=6.5e-22 Score=125.90 Aligned_cols=62 Identities=19% Similarity=0.324 Sum_probs=59.2
Q ss_pred ccCcccccccCCCCCH--HHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHhCChhHHHHhhc
Q 040219 37 GGSLYEVLRIEPTTMI--SEIKTVYRSLVKVYHPDLSGNGRDFTKIHNAYETLSDPKARVVYDM 98 (100)
Q Consensus 37 ~~~~y~iLgv~~~a~~--~eIk~ayr~l~~~~hPD~~~~~~~~~~i~~Ay~~L~dp~~R~~Yd~ 98 (100)
..++|+||||+++++. ++||++||++++++|||++++.+.|++|++||++|+||.+|..||.
T Consensus 7 ~~~~Y~iLgv~~~as~~~~eIk~aYr~la~~~HPDk~~~~e~f~~I~~AYevL~d~~~R~~~~~ 70 (114)
T 1gh6_A 7 SLQLMDLLGLERSAWGNIPLMRKAYLKKCKEFHPDKGGDEEKMKKMNTLYKKMEDGVKYAHQPD 70 (114)
T ss_dssp HHHHHHHTTCCTTSCSCHHHHHHHHHHTTTTCCTTTCCTTTTTHHHHHHHHHHHHHHHSCCSSC
T ss_pred hhhHHHHcCCCCCCCcCHHHHHHHHHHHHHHHCCCCCccHHHHHHHHHHHHHHCCHHHHHHhhh
Confidence 4689999999999998 9999999999999999999999999999999999999999999984
No 22
>1fpo_A HSC20, chaperone protein HSCB; molecular chaperone; 1.80A {Escherichia coli} SCOP: a.2.3.1 a.23.1.1
Probab=99.81 E-value=1.4e-20 Score=126.98 Aligned_cols=63 Identities=22% Similarity=0.388 Sum_probs=57.8
Q ss_pred cCcccccccCCCC--CHHHHHHHHHHHHHHhCCCCCCC---------hHHHHHHHHHHHHhCChhHHHHhhccC
Q 040219 38 GSLYEVLRIEPTT--MISEIKTVYRSLVKVYHPDLSGN---------GRDFTKIHNAYETLSDPKARVVYDMSL 100 (100)
Q Consensus 38 ~~~y~iLgv~~~a--~~~eIk~ayr~l~~~~hPD~~~~---------~~~~~~i~~Ay~~L~dp~~R~~Yd~~l 100 (100)
.|||+||||++++ +..+||++|+++++++|||++++ .+.|..|++||++|+||.+|..||..|
T Consensus 1 ~d~y~lLgl~~~a~i~~~eIk~aYr~L~~~~HPDk~~~~~~~e~~~a~~~f~~In~AY~vL~dp~~R~~Yd~~l 74 (171)
T 1fpo_A 1 MDYFTLFGLPARYQLDTQALSLRFQDLQRQYHPDKFASGSQAEQLAAVQQSATINQAWQTLRHPLMRAEYLLSL 74 (171)
T ss_dssp CHHHHHTTCCSSSCCCHHHHHHHHHHHHHHTCGGGGTTSCHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHT
T ss_pred CCHHHHCCCCCCCCCCHHHHHHHHHHHHHHhCcCCCCCCCHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHh
Confidence 3799999999999 99999999999999999999875 247999999999999999999999754
No 23
>3bvo_A CO-chaperone protein HSCB, mitochondrial precurso; structural genomics medical relev protein structure initiative, PSI-2; 3.00A {Homo sapiens}
Probab=99.80 E-value=6e-20 Score=127.22 Aligned_cols=67 Identities=21% Similarity=0.446 Sum_probs=59.0
Q ss_pred CCCCccCcccccccCCC--CCHHHHHHHHHHHHHHhCCCCCCC---------hHHHHHHHHHHHHhCChhHHHHhhcc
Q 040219 33 VPGTGGSLYEVLRIEPT--TMISEIKTVYRSLVKVYHPDLSGN---------GRDFTKIHNAYETLSDPKARVVYDMS 99 (100)
Q Consensus 33 ~~~~~~~~y~iLgv~~~--a~~~eIk~ayr~l~~~~hPD~~~~---------~~~~~~i~~Ay~~L~dp~~R~~Yd~~ 99 (100)
++....|||+||||+++ ++..+||++||++++++|||++++ .+.|..|++||++|+||.+|+.||..
T Consensus 38 ~~~~~~d~y~lLgv~~~~~a~~~eIk~aYr~L~~~~HPDk~~~~~~~e~~~a~~~f~~In~AY~vLsdp~~R~~Yd~~ 115 (207)
T 3bvo_A 38 APDPTRDYFSLMDCNRSFRVDTAKLQHRYQQLQRLVHPDFFSQRSQTEKDFSEKHSTLVNDAYKTLLAPLSRGLYLLK 115 (207)
T ss_dssp CCCTTCCHHHHTTSCSCSCCCHHHHHHHHHHHHHHHCGGGGTTSCHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHH
T ss_pred CCCCCCCHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHH
Confidence 33446899999999986 789999999999999999999874 24689999999999999999999854
No 24
>2pf4_E Small T antigen; PP2A, SV40, DNAJ, aalpha subunit, hydrolase regulat protein complex; 3.10A {Simian virus 40} PDB: 2pkg_C
Probab=99.80 E-value=1.4e-21 Score=132.28 Aligned_cols=64 Identities=20% Similarity=0.343 Sum_probs=57.5
Q ss_pred CccCcccccccCCCCC--HHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHhCChhHHHHhhcc
Q 040219 36 TGGSLYEVLRIEPTTM--ISEIKTVYRSLVKVYHPDLSGNGRDFTKIHNAYETLSDPKARVVYDMS 99 (100)
Q Consensus 36 ~~~~~y~iLgv~~~a~--~~eIk~ayr~l~~~~hPD~~~~~~~~~~i~~Ay~~L~dp~~R~~Yd~~ 99 (100)
...|+|+||||+++++ .++||+|||++++++|||++++++.|++|++||++|+||.+|+.||+.
T Consensus 9 ~~~d~Y~vLGl~~~as~~~~eIKkAYRkLa~~~HPDk~~~~e~F~~I~~AYevLsdp~kR~~YD~~ 74 (174)
T 2pf4_E 9 ESLQLMDLLGLERSAWGNIPLMRKAYLKKCKEFHPDKGGDEEKMKKMNTLYKKMEDGVKYAHQPDF 74 (174)
T ss_dssp HHHHHHHTTTCCGGGTTCHHHHHHHHHHHGGGCSCC---CCTTTTHHHHHHHHHHHHHHHHTSCGG
T ss_pred ccccHHHHcCCCCCCCcCHHHHHHHHHHHHHHHCcCCCCCHHHHHHHHHHHHHhCCHHHHHHHhcc
Confidence 3579999999999998 699999999999999999999999999999999999999999999973
No 25
>3apq_A DNAJ homolog subfamily C member 10; thioredoxin fold, DNAJ domain, endoplasmic reticulum, oxidor; 1.84A {Mus musculus}
Probab=99.80 E-value=4.1e-20 Score=126.17 Aligned_cols=62 Identities=35% Similarity=0.558 Sum_probs=58.2
Q ss_pred cCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCCC----hHHHHHHHHHHHHhCChhHHHHhhcc
Q 040219 38 GSLYEVLRIEPTTMISEIKTVYRSLVKVYHPDLSGN----GRDFTKIHNAYETLSDPKARVVYDMS 99 (100)
Q Consensus 38 ~~~y~iLgv~~~a~~~eIk~ayr~l~~~~hPD~~~~----~~~~~~i~~Ay~~L~dp~~R~~Yd~~ 99 (100)
.|||+||||+++++.++||++||++++++|||++++ .+.|+.|++||++|+||.+|..||..
T Consensus 2 ~~~y~~l~~~~~a~~~~ik~ay~~l~~~~HPD~~~~~~~~~~~f~~i~~Ay~~L~~~~~r~~yd~~ 67 (210)
T 3apq_A 2 QNFYSLLGVSKTASSREIRQAFKKLALKLHPDKNPNNPNAHGDFLKINRAYEVLKDEDLRKKYDKY 67 (210)
T ss_dssp CCHHHHHTCCTTCCHHHHHHHHHHHHHHHCGGGCTTCTTHHHHHHHHHHHHHHHTSHHHHHHHHHH
T ss_pred CCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHh
Confidence 589999999999999999999999999999999863 56899999999999999999999963
No 26
>2guz_A Mitochondrial import inner membrane translocase subunit TIM14; DNAJ-fold, chaperone, protein transport; HET: FLC; 2.00A {Saccharomyces cerevisiae}
Probab=99.78 E-value=6.2e-20 Score=107.75 Aligned_cols=57 Identities=25% Similarity=0.292 Sum_probs=53.1
Q ss_pred ccCcccccccCC-CCCHHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHhCChhHH
Q 040219 37 GGSLYEVLRIEP-TTMISEIKTVYRSLVKVYHPDLSGNGRDFTKIHNAYETLSDPKAR 93 (100)
Q Consensus 37 ~~~~y~iLgv~~-~a~~~eIk~ayr~l~~~~hPD~~~~~~~~~~i~~Ay~~L~dp~~R 93 (100)
..++|+||||++ +++.++||++||++++++|||++++.+.|++|++||++|+|+..|
T Consensus 13 ~~~~y~iLgl~~~~a~~~eIk~ayr~l~~~~HPDk~g~~~~f~~i~~Aye~L~~~~~r 70 (71)
T 2guz_A 13 SKEALQILNLTENTLTKKKLKEVHRKIMLANHPDKGGSPFLATKINEAKDFLEKRGIS 70 (71)
T ss_dssp HHHHHHHTTCCTTTCCHHHHHHHHHHHHHHHCGGGTCCHHHHHHHHHHHHHHHHHCCC
T ss_pred HHHHHHHcCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHhhhhhc
Confidence 478999999998 799999999999999999999999999999999999999987654
No 27
>3uo3_A J-type CO-chaperone JAC1, mitochondrial; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, J-protein; 1.85A {Saccharomyces cerevisiae} PDB: 3uo2_A
Probab=99.77 E-value=1.5e-19 Score=123.01 Aligned_cols=65 Identities=29% Similarity=0.514 Sum_probs=58.9
Q ss_pred CccCccccc------ccCC-CCCHHHHHHHHHHHHHHhCCCCCC-ChHHHHHHHHHHHHhCChhHHHHhhccC
Q 040219 36 TGGSLYEVL------RIEP-TTMISEIKTVYRSLVKVYHPDLSG-NGRDFTKIHNAYETLSDPKARVVYDMSL 100 (100)
Q Consensus 36 ~~~~~y~iL------gv~~-~a~~~eIk~ayr~l~~~~hPD~~~-~~~~~~~i~~Ay~~L~dp~~R~~Yd~~l 100 (100)
...|||+|| |+++ +++..+||++||++++++|||+++ +.+.|..|++||++|+||.+|..||..|
T Consensus 9 ~~~d~y~ll~~~~p~~~~~~~a~~~eIk~aYr~la~~~HPDk~~~a~~~f~~i~~AY~vL~dp~~R~~Yd~~l 81 (181)
T 3uo3_A 9 FTSTFYELFPKTFPKKLPIWTIDQSRLRKEYRQLQAQHHPDMAQQGSEQSSTLNQAYHTLKDPLRRSQYMLKL 81 (181)
T ss_dssp CSCCTGGGCTTTCTTCSCCSCCCHHHHHHHHHHHHHTCCTTSCCSCSSGGGSHHHHHHHHHSHHHHHHHHHHH
T ss_pred CCCCHHHHhccccccCCCCCCCCHHHHHHHHHHHHHHhCcCCCccHHHHHHHHHHHHHHHcChHHHHHHHHHH
Confidence 458999999 4665 899999999999999999999988 5779999999999999999999999753
No 28
>3lz8_A Putative chaperone DNAJ; structure genomics, structural genomics, PSI-2, protein STRU initiative; 2.90A {Klebsiella pneumoniae subsp} PDB: 2kqx_A
Probab=99.76 E-value=4.4e-20 Score=135.35 Aligned_cols=63 Identities=37% Similarity=0.645 Sum_probs=0.0
Q ss_pred ccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCCC---hHHHHHHHHHHHHhCChhHHHHhhcc
Q 040219 37 GGSLYEVLRIEPTTMISEIKTVYRSLVKVYHPDLSGN---GRDFTKIHNAYETLSDPKARVVYDMS 99 (100)
Q Consensus 37 ~~~~y~iLgv~~~a~~~eIk~ayr~l~~~~hPD~~~~---~~~~~~i~~Ay~~L~dp~~R~~Yd~~ 99 (100)
..|||+||||+++|+.+|||+|||+++++||||++++ .+.|++|++||++|+||.+|..||+.
T Consensus 27 ~~d~Y~vLgv~~~as~~eIk~aYr~la~~~HPDk~~~~~a~~~f~~i~~Ay~vL~d~~~R~~YD~~ 92 (329)
T 3lz8_A 27 LKDYYAILGVQPTDDLKTIKTAYRRLARKYHPDVSKENDAEAKFKDLAEAWEVLKDEQRRAEYDQL 92 (329)
T ss_dssp ------------------------------------------------------------------
T ss_pred ccCHHHHcCcCCCCCHHHHHHHHHHHHHHHCCCCCCChHHHHHHHHHHHHHHHhhhhhhhcccchh
Confidence 4799999999999999999999999999999999864 56899999999999999999999974
No 29
>1iur_A KIAA0730 protein; DNAJ like domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Homo sapiens} SCOP: a.2.3.1
Probab=99.76 E-value=1.8e-19 Score=109.91 Aligned_cols=61 Identities=20% Similarity=0.159 Sum_probs=54.9
Q ss_pred CCCccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCCC-----hHHHHHHHHHHHHhCChhHHH
Q 040219 34 PGTGGSLYEVLRIEPTTMISEIKTVYRSLVKVYHPDLSGN-----GRDFTKIHNAYETLSDPKARV 94 (100)
Q Consensus 34 ~~~~~~~y~iLgv~~~a~~~eIk~ayr~l~~~~hPD~~~~-----~~~~~~i~~Ay~~L~dp~~R~ 94 (100)
+....++|+||||+++++.++||++|++++++||||++++ .+.|++|++||++|+|...|.
T Consensus 12 ~~~~~~~y~vLgv~~~as~~eIKkaYrkla~~~HPDk~~~~~~~a~~~F~~I~~AYevL~~~~~r~ 77 (88)
T 1iur_A 12 GSILKEVTSVVEQAWKLPESERKKIIRRLYLKWHPDKNPENHDIANEVFKHLQNEINRLEKQAFLD 77 (88)
T ss_dssp SSCHHHHHHHHHHTTSSCSHHHHHHHHHHHHHTCTTTSSSCHHHHHHHHHHHHHHHHHHHHHTTCS
T ss_pred CccHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHCCCCCCCchHHHHHHHHHHHHHHHHHHhhcccc
Confidence 3456899999999999999999999999999999999986 468999999999999977663
No 30
>1n4c_A Auxilin; four helix bundle, protein binding; NMR {Bos taurus} SCOP: a.2.3.1 PDB: 1xi5_J
Probab=99.72 E-value=6.4e-19 Score=119.89 Aligned_cols=59 Identities=20% Similarity=0.401 Sum_probs=55.2
Q ss_pred cCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCCC-------hHHHHHHHHHHHHhCChhHHHHh
Q 040219 38 GSLYEVLRIEPTTMISEIKTVYRSLVKVYHPDLSGN-------GRDFTKIHNAYETLSDPKARVVY 96 (100)
Q Consensus 38 ~~~y~iLgv~~~a~~~eIk~ayr~l~~~~hPD~~~~-------~~~~~~i~~Ay~~L~dp~~R~~Y 96 (100)
.++|+||||+++++.++||++||++++++|||++++ .+.|+.|++||++|+|+.+|..|
T Consensus 117 ~d~Y~vLgv~~~As~~eIKkAYRklal~~HPDK~~~~~~e~~A~~~F~~I~eAYevLsD~~kR~~Y 182 (182)
T 1n4c_A 117 ETKWKPVGMADLVTPEQVKKVYRKAVLVVHPDKATGQPYEQYAKMIFMELNDAWSEFENQGQKPLY 182 (182)
T ss_dssp CCCCCCCCGGGGSSHHHHHHHHHHHHHHTCGGGGSSCTTHHHHHHHHHHHHHHHHHHHHHHSSCCC
T ss_pred cchhhcCCCCCCCCHHHHHHHHHHHHHHHCcCcCCCcchHHHHHHHHHHHHHHHHHHCCHHhhhhC
Confidence 699999999999999999999999999999999764 35899999999999999999877
No 31
>3ag7_A Putative uncharacterized protein F9E10.5; J-domain, AN auxilin-like J-domain containing protein, JAC1, chloroplast accumulation response; 1.80A {Arabidopsis thaliana}
Probab=99.70 E-value=3.7e-18 Score=107.26 Aligned_cols=55 Identities=15% Similarity=0.290 Sum_probs=49.5
Q ss_pred CccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCCC-----------hHHHHHHHHHHHHhCChh
Q 040219 36 TGGSLYEVLRIEPTTMISEIKTVYRSLVKVYHPDLSGN-----------GRDFTKIHNAYETLSDPK 91 (100)
Q Consensus 36 ~~~~~y~iLgv~~~a~~~eIk~ayr~l~~~~hPD~~~~-----------~~~~~~i~~Ay~~L~dp~ 91 (100)
...+||+|||++. ++.++||+|||++++++|||++++ .+.|+.|++||++|+|+.
T Consensus 39 ~~~d~Y~vl~~~~-As~~eIKkAYRklal~~HPDK~~~~~~~~e~~~~A~~~F~~I~~AYevLsd~~ 104 (106)
T 3ag7_A 39 SGSGWKPVPLMDM-IEGNAVRKSYQRALLILHPDKLQQKGASANQKYMAEKVFELLQEAWDHFNTLG 104 (106)
T ss_dssp TTSCCCCCCGGGS-CSHHHHHHHHHHHHHHHCHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred ccCCHHHHcCCCC-CCHHHHHHHHHHHHHHHCcCcCCCcccchhhHHHHHHHHHHHHHHHHHHcCcc
Confidence 3479999999996 999999999999999999999652 468999999999999985
No 32
>2qwo_B Putative tyrosine-protein phosphatase auxilin; chaperone-cochaperone complex, ATP-binding, nucleotide-bindi nucleus, phosphorylation, stress response; HET: ADP; 1.70A {Bos taurus} PDB: 2qwp_B* 2qwq_B* 2qwr_B* 2qwn_B* 1nz6_A
Probab=99.67 E-value=1.6e-17 Score=102.03 Aligned_cols=52 Identities=19% Similarity=0.346 Sum_probs=47.7
Q ss_pred cCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCCC-------hHHHHHHHHHHHHhCC
Q 040219 38 GSLYEVLRIEPTTMISEIKTVYRSLVKVYHPDLSGN-------GRDFTKIHNAYETLSD 89 (100)
Q Consensus 38 ~~~y~iLgv~~~a~~~eIk~ayr~l~~~~hPD~~~~-------~~~~~~i~~Ay~~L~d 89 (100)
.++|++|||+++++.++||+|||++++++|||++++ ++.|+.|++||++|.+
T Consensus 33 ~~~y~~Lgv~~~as~~eIKkAYRklal~~HPDK~~~~~~~~~A~~~F~~i~eAyevL~~ 91 (92)
T 2qwo_B 33 ETKWKPVGMADLVTPEQVKKVYRKAVLVVHPCKATGQPYEQYAKMIFMELNDAWSEFEN 91 (92)
T ss_dssp CCSCCCCCGGGSSSHHHHHHHHHHHHHHTCHHHHTTSTTHHHHHHHHHHHHHHHHHHHH
T ss_pred ccCCeecCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchhHhHHHHHHHHHHHHHHHHHh
Confidence 588999999999999999999999999999999764 3479999999999964
No 33
>3apo_A DNAJ homolog subfamily C member 10; PDI family, thioredoxin, endoplasmic reticulum, oxidoreducta; 2.40A {Mus musculus}
Probab=99.66 E-value=9.9e-18 Score=132.26 Aligned_cols=65 Identities=34% Similarity=0.526 Sum_probs=40.0
Q ss_pred CCccCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCCC----hHHHHHHHHHHHHhCChhHHHHhhcc
Q 040219 35 GTGGSLYEVLRIEPTTMISEIKTVYRSLVKVYHPDLSGN----GRDFTKIHNAYETLSDPKARVVYDMS 99 (100)
Q Consensus 35 ~~~~~~y~iLgv~~~a~~~eIk~ayr~l~~~~hPD~~~~----~~~~~~i~~Ay~~L~dp~~R~~Yd~~ 99 (100)
....|||+||||+++++.++||+|||++++++|||++++ .+.|++|++||++|+||.+|..||+.
T Consensus 18 ~~~~~~y~~lg~~~~a~~~~i~~ay~~l~~~~hpd~~~~~~~~~~~f~~i~~ay~~L~~~~~r~~yd~~ 86 (780)
T 3apo_A 18 RHDQNFYSLLGVSKTASSREIRQAFKKLALKLHPDKNPNNPNAHGDFLKINRAYEVLKDEDLRKKYDKY 86 (780)
T ss_dssp -----CHHHHTCCTTCCHHHHHHHHCC-----------------------CTHHHHHHSHHHHHHHTTC
T ss_pred CCCCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCChHHHHHHHHHHHHHHHHcChHHHHHHHhh
Confidence 346899999999999999999999999999999999863 56899999999999999999999974
No 34
>2guz_B Mitochondrial import inner membrane translocase subunit TIM16; DNAJ-fold, chaperone, protein transport; HET: FLC; 2.00A {Saccharomyces cerevisiae}
Probab=99.36 E-value=6.9e-13 Score=76.46 Aligned_cols=52 Identities=21% Similarity=0.212 Sum_probs=48.5
Q ss_pred cCcccccccCCC---CCHHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHhCC
Q 040219 38 GSLYEVLRIEPT---TMISEIKTVYRSLVKVYHPDLSGNGRDFTKIHNAYETLSD 89 (100)
Q Consensus 38 ~~~y~iLgv~~~---a~~~eIk~ayr~l~~~~hPD~~~~~~~~~~i~~Ay~~L~d 89 (100)
...|+||||+++ ++.++|+++||+++..+|||++++......|++|++.|..
T Consensus 4 ~EA~~ILgv~~~~~~a~~~~Ik~~yr~Lm~~nhPDkGGS~yl~~ki~~Ake~l~~ 58 (65)
T 2guz_B 4 DESCKILNIEESKGDLNMDKINNRFNYLFEVNDKEKGGSFYLQSKVYRAAERLKW 58 (65)
T ss_dssp HHHHHHTTCCGGGTCCSHHHHHHHHHHHHHHTCGGGTCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhCCCCCcCcCCHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHH
Confidence 356899999999 9999999999999999999999999999999999999864
No 35
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.26 E-value=3.8e-12 Score=91.89 Aligned_cols=61 Identities=34% Similarity=0.532 Sum_probs=52.5
Q ss_pred cCcccccccCCCCCHHHHHHHHHHHHHHhCCCCCCCh-------HHHHHHHHHHHHhCChhHHHHhhc
Q 040219 38 GSLYEVLRIEPTTMISEIKTVYRSLVKVYHPDLSGNG-------RDFTKIHNAYETLSDPKARVVYDM 98 (100)
Q Consensus 38 ~~~y~iLgv~~~a~~~eIk~ayr~l~~~~hPD~~~~~-------~~~~~i~~Ay~~L~dp~~R~~Yd~ 98 (100)
.++|++||+...++.++|+++|+++++++|||+.+.. +.|..|.+||++|+||.+|..||+
T Consensus 382 ~~~y~~lg~~~~~~~~~~~~~y~~~~l~~~pd~~~~~~~~~~a~~~~~~i~~ay~~L~d~~~r~~yd~ 449 (450)
T 2y4t_A 382 RDYYKILGVKRNAKKQEIIKAYRKLALQWHPDNFQNEEEKKKAEKKFIDIAAAKEVLSDPEMRKKFDD 449 (450)
T ss_dssp CCSGGGSCSSTTCCTTHHHHHHHHHHHHSCGGGCCSHHHHHHHHHHHHHHHHHHHHSSGGGGC-----
T ss_pred hhHHHHhCCCccCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHHHHhCCHHHHHhccC
Confidence 5899999999999999999999999999999998764 379999999999999999999996
No 36
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=93.66 E-value=0.051 Score=42.23 Aligned_cols=47 Identities=19% Similarity=0.179 Sum_probs=36.3
Q ss_pred CccCcccccccCCCCCH--HHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHH
Q 040219 36 TGGSLYEVLRIEPTTMI--SEIKTVYRSLVKVYHPDLSGNGRDFTKIHNAYET 86 (100)
Q Consensus 36 ~~~~~y~iLgv~~~a~~--~eIk~ayr~l~~~~hPD~~~~~~~~~~i~~Ay~~ 86 (100)
...++|.+||++-+... .+|+++||++++..+++ .+++..+..|+.|
T Consensus 627 ~~~~~~~~lG~~~~~~~lr~~~~~ayr~la~~~~~~----~~r~~lvd~a~~v 675 (681)
T 2pzi_A 627 NKASTNHILGFPFTSHGLRLGVEASLRSLARVAPTQ----RHRYTLVDMANKV 675 (681)
T ss_dssp CCCSSSEETTEESSHHHHHHHHHHHHHHHHHHCSSH----HHHHHHHHHHHHH
T ss_pred cCCCCcccCCCCCChHHHHHHHHHHHHHHHHhCCCh----HHHHHHHHHhccc
Confidence 34569999999766544 67999999999966554 4678888888765
No 37
>2b7e_A PRE-mRNA processing protein PRP40; structural protein; NMR {Saccharomyces cerevisiae} SCOP: a.159.2.1
Probab=65.52 E-value=11 Score=20.55 Aligned_cols=47 Identities=15% Similarity=0.275 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHHHhCCCCCCC-hHHHHHH---HHHHHHhCC-hh-HHHHhhcc
Q 040219 53 SEIKTVYRSLVKVYHPDLSGN-GRDFTKI---HNAYETLSD-PK-ARVVYDMS 99 (100)
Q Consensus 53 ~eIk~ayr~l~~~~hPD~~~~-~~~~~~i---~~Ay~~L~d-p~-~R~~Yd~~ 99 (100)
+|-.++|.++.+...=|..-+ +..+..| ..-|.+|.| |. ++..|+.+
T Consensus 3 eEae~aF~~lL~~~~V~s~wsweqamr~i~i~DPrY~al~d~~~eRK~~Fe~Y 55 (59)
T 2b7e_A 3 MEAEKEFITMLKENQVDSTWSFSRIISELGTRDPRYWMVDDDPLWKKEMFEKY 55 (59)
T ss_dssp THHHHHHHHHHHHTTCCSSCCHHHHHHHHHHHCTHHHHSCCCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHcCCCCCCcHHHHHHHhccCCCccccccCCHHHHHHHHHHH
Confidence 567899999999775554445 4456666 358999997 65 56666643
No 38
>2d7l_A WD repeat and HMG-box DNA binding protein 1; high mobility group box domain, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=57.44 E-value=11 Score=21.36 Aligned_cols=41 Identities=20% Similarity=0.139 Sum_probs=30.6
Q ss_pred HHHHHHHHHHhCCCCCCChHHHHHHHHHHHHhCChhHHHHh
Q 040219 56 KTVYRSLVKVYHPDLSGNGRDFTKIHNAYETLSDPKARVVY 96 (100)
Q Consensus 56 k~ayr~l~~~~hPD~~~~~~~~~~i~~Ay~~L~dp~~R~~Y 96 (100)
-+.+|..++.-||+.....+....|.+.|..|++.++....
T Consensus 17 ~~e~R~~ik~~~P~~~~~~eisK~lge~Wk~ls~eeK~~y~ 57 (81)
T 2d7l_A 17 LEENRSNILSDNPDFSDEADIIKEGMIRFRVLSTEERKVWA 57 (81)
T ss_dssp HHHHHHHHHHHCTTCCSHHHHHHHHHHHHSSSCHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCchhHHHHHHHHHHHHcCCHHHHHHHH
Confidence 45567778888999763467889999999999966554433
No 39
>4a3n_A Transcription factor SOX-17; 2.40A {Homo sapiens} SCOP: a.21.1.0
Probab=56.92 E-value=20 Score=19.07 Aligned_cols=38 Identities=18% Similarity=0.208 Sum_probs=27.8
Q ss_pred HHHHHHHHHHhCCCCCCChHHHHHHHHHHHHhCChhHHH
Q 040219 56 KTVYRSLVKVYHPDLSGNGRDFTKIHNAYETLSDPKARV 94 (100)
Q Consensus 56 k~ayr~l~~~~hPD~~~~~~~~~~i~~Ay~~L~dp~~R~ 94 (100)
.+.++..++.-||+.. ..+....|.+.|..|++.++..
T Consensus 14 ~~~~r~~~~~~~p~~~-~~eisk~lg~~Wk~ls~~eK~~ 51 (71)
T 4a3n_A 14 AKDERKRLAQQNPDLH-NAELSKMLGKSWKALTLAEKRP 51 (71)
T ss_dssp HHHHHHHHHTTCTTSC-HHHHHHHHHHHHHHSCHHHHHH
T ss_pred HHHHHHHHHHHCCCCC-HHHHHHHHHHHHhcCCHHHHHH
Confidence 4556777777888765 4578888999999998655443
No 40
>1qqr_A Streptokinase domain B; non-proteolytic, plasminogen activation, fibrinolysis, hydrolase activator; 2.30A {Streptococcus dysgalactiae subsp} SCOP: d.15.5.1 PDB: 1c4p_A
Probab=54.19 E-value=7.7 Score=24.73 Aligned_cols=31 Identities=26% Similarity=0.343 Sum_probs=27.4
Q ss_pred CcccccccCCCCCHHHHHHHHHHHHHHhCCC
Q 040219 39 SLYEVLRIEPTTMISEIKTVYRSLVKVYHPD 69 (100)
Q Consensus 39 ~~y~iLgv~~~a~~~eIk~ayr~l~~~~hPD 69 (100)
-++..+.|....+.+|++++=..+..+.||+
T Consensus 33 ~~l~~k~ig~~Its~eL~~~AqeiL~q~hp~ 63 (138)
T 1qqr_A 33 KLLKTLAIGDTITSQELLAQAQSILNKNHPG 63 (138)
T ss_dssp EEEEEECTTCEEEHHHHHHHHHHHHHHHSTT
T ss_pred hhhcccccCcccCHHHHHHHHHHHHHhcCCC
Confidence 3467778888889999999999999999998
No 41
>3f27_D Transcription factor SOX-17; protein-DNA complex, HMG domain, endodermal, activator, DNA- nucleus, transcription regulation, transcrip complex; HET: DNA; 2.75A {Mus musculus} SCOP: a.21.1.1 PDB: 2yul_A
Probab=48.09 E-value=33 Score=18.87 Aligned_cols=38 Identities=18% Similarity=0.208 Sum_probs=28.2
Q ss_pred HHHHHHHHHHhCCCCCCChHHHHHHHHHHHHhCChhHHH
Q 040219 56 KTVYRSLVKVYHPDLSGNGRDFTKIHNAYETLSDPKARV 94 (100)
Q Consensus 56 k~ayr~l~~~~hPD~~~~~~~~~~i~~Ay~~L~dp~~R~ 94 (100)
.+.++..++.-||+.. ..+....|.+.|..|++.++..
T Consensus 18 ~~~~r~~~~~~~p~~~-~~eisk~lg~~Wk~ls~~eK~~ 55 (83)
T 3f27_D 18 AKDERKRLAQQNPDLH-NAELSKMLGKSWKALTLAEKRP 55 (83)
T ss_dssp HHHHHHHHHHHCSSSC-HHHHHHHHHHHHHHSCHHHHHH
T ss_pred HHHHHHHHHHHCCCCC-HHHHHHHHHHHHhcCCHHHHHH
Confidence 4566777788899865 4678888999999998655443
No 42
>1uzc_A Hypothetical protein FLJ21157; nuclear protein, structure, transcription, phosphopeptide recognition, RNA polymerase II carboxyl- terminal domain; NMR {Homo sapiens} SCOP: a.159.2.1 PDB: 2kzg_A 2lks_A 2l9v_A
Probab=46.45 E-value=37 Score=18.88 Aligned_cols=49 Identities=14% Similarity=0.234 Sum_probs=31.5
Q ss_pred CCCHHHHHHHHHHHHHHhCCCCCCC-hHHHHHHH--HHHHHhCCh-hHHHHhh
Q 040219 49 TTMISEIKTVYRSLVKVYHPDLSGN-GRDFTKIH--NAYETLSDP-KARVVYD 97 (100)
Q Consensus 49 ~a~~~eIk~ayr~l~~~~hPD~~~~-~~~~~~i~--~Ay~~L~dp-~~R~~Yd 97 (100)
..+.++.+.+|+.|....+=+.... +..+..|. .-|.+|.++ .++..|+
T Consensus 11 ~~t~eea~~~F~~LL~e~~V~~~~tWe~~~~~i~~DpRY~al~~~~eRk~~F~ 63 (71)
T 1uzc_A 11 WNTKEEAKQAFKELLKEKRVPSNASWEQAMKMIINDPRYSALAKLSEKKQAFN 63 (71)
T ss_dssp CCSHHHHHHHHHHHHHHTTCCTTCCHHHHHHHHHTSGGGGGCSSHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHcCcCCCCCHHHHHHHHccCccccccCCHHHHHHHHH
Confidence 4689999999999999886554444 33333333 356677764 4444444
No 43
>1ckt_A High mobility group 1 protein; high-mobility group domain, BENT DNA, protein-drug-DNA compl regulation-DNA complex; HET: DNA 5IU; 2.50A {Rattus norvegicus} SCOP: a.21.1.1 PDB: 1j3x_A
Probab=46.26 E-value=33 Score=18.25 Aligned_cols=37 Identities=24% Similarity=0.162 Sum_probs=27.3
Q ss_pred HHHHHHHHhCCCCCC-ChHHHHHHHHHHHHhCChhHHH
Q 040219 58 VYRSLVKVYHPDLSG-NGRDFTKIHNAYETLSDPKARV 94 (100)
Q Consensus 58 ayr~l~~~~hPD~~~-~~~~~~~i~~Ay~~L~dp~~R~ 94 (100)
..|..++.-||+... ..+....|.+.|..|++..+..
T Consensus 15 ~~r~~~~~~~p~~~~~~~eisk~lg~~Wk~ls~~eK~~ 52 (71)
T 1ckt_A 15 TCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGK 52 (71)
T ss_dssp HHHHHHHHHCTTCCCCHHHHHHHHHHHHHTCCTTTSHH
T ss_pred HHHHHHHHHCCCCCCcHHHHHHHHHHHHhhCCHHHHHH
Confidence 445556677998654 3688899999999999876543
No 44
>1wgf_A Upstream binding factor 1; transcription factor, DNA binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: a.21.1.1
Probab=45.71 E-value=30 Score=19.64 Aligned_cols=38 Identities=16% Similarity=0.180 Sum_probs=27.3
Q ss_pred HHHHHHHHHhCCCCCCChHHHHHHHHHHHHhCChhHHHH
Q 040219 57 TVYRSLVKVYHPDLSGNGRDFTKIHNAYETLSDPKARVV 95 (100)
Q Consensus 57 ~ayr~l~~~~hPD~~~~~~~~~~i~~Ay~~L~dp~~R~~ 95 (100)
+.+|..++.-||+. ...+....|.+.|..|++.++...
T Consensus 33 ~~~r~~~k~~~P~~-~~~eisk~lg~~Wk~ls~eeK~~Y 70 (90)
T 1wgf_A 33 EEKRRQLQEERPEL-SESELTRLLARMWNDLSEKKKAKY 70 (90)
T ss_dssp HHTHHHHHHHCTTS-CHHHHHHHHHHHHHHSCHHHHHHH
T ss_pred HHHHHHHHHHCCCC-CHHHHHHHHHHHHHhCCHHHHHHH
Confidence 44566667778984 346788999999999996554433
No 45
>3nm9_A HMG-D, high mobility group protein D; DNA bending, non-sequence-specific, HMG chromosomal protein; HET: DNA; 2.85A {Drosophila melanogaster} SCOP: a.21.1.1 PDB: 1e7j_A* 1hma_A 1qrv_A*
Probab=45.29 E-value=35 Score=18.36 Aligned_cols=37 Identities=11% Similarity=0.151 Sum_probs=27.4
Q ss_pred HHHHHHHHHHhCCCCCCChHHHHHHHHHHHHhCChhHHHHh
Q 040219 56 KTVYRSLVKVYHPDLSGNGRDFTKIHNAYETLSDPKARVVY 96 (100)
Q Consensus 56 k~ayr~l~~~~hPD~~~~~~~~~~i~~Ay~~L~dp~~R~~Y 96 (100)
.+.+|..++.-||+.. ..+....|.+.|..|++ +..|
T Consensus 15 ~~~~r~~~~~~~p~~~-~~eisk~lg~~Wk~ls~---K~~y 51 (73)
T 3nm9_A 15 LNSARESIKRENPGIK-VTEVAKRGGELWRAMKD---KSEW 51 (73)
T ss_dssp HHHHHHHHHHHSSSCC-HHHHHHHHHHHHHHCSC---CHHH
T ss_pred HHHHHHHHHHHCCCCC-HHHHHHHHHHHHHcCCc---hHHH
Confidence 4456667777889864 46788899999999987 5444
No 46
>1i11_A Transcription factor SOX-5; HMG BOX, DNA bending, DNA recognition, chromatin, DNA binding protein, DNA sequence specific, testis determining.; NMR {Mus musculus} SCOP: a.21.1.1
Probab=45.04 E-value=33 Score=18.87 Aligned_cols=40 Identities=13% Similarity=0.223 Sum_probs=28.7
Q ss_pred HHHHHHHHHhCCCCCCChHHHHHHHHHHHHhCChhHHHHhh
Q 040219 57 TVYRSLVKVYHPDLSGNGRDFTKIHNAYETLSDPKARVVYD 97 (100)
Q Consensus 57 ~ayr~l~~~~hPD~~~~~~~~~~i~~Ay~~L~dp~~R~~Yd 97 (100)
+.++..++.-||+.. ..+....|.+.|..|++.++...++
T Consensus 17 ~~~r~~~~~~~p~~~-~~eisk~lg~~Wk~ls~eeK~~y~~ 56 (81)
T 1i11_A 17 KDERRKILQAFPDMH-NSNISKILGSRWKAMTNLEKQPYYE 56 (81)
T ss_dssp HHHHHHHHTTCSSCC-HHHHHHHHHHHHTTSCSGGGHHHHH
T ss_pred HHHHHHHHHHCCCCC-HHHHHHHHHhhhhhCCHHHHHHHHH
Confidence 445666677788754 4678889999999999876654443
No 47
>2cqn_A Formin-binding protein 3; FF domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.159.2.1
Probab=42.57 E-value=39 Score=19.05 Aligned_cols=48 Identities=15% Similarity=0.350 Sum_probs=31.7
Q ss_pred CCHHHHHHHHHHHHHHhCCCCCCCh---H---HHHHHHHHHHHhCCh-hHHHHhhc
Q 040219 50 TMISEIKTVYRSLVKVYHPDLSGNG---R---DFTKIHNAYETLSDP-KARVVYDM 98 (100)
Q Consensus 50 a~~~eIk~ayr~l~~~~hPD~~~~~---~---~~~~i~~Ay~~L~dp-~~R~~Yd~ 98 (100)
.-...++..|+.+.+...|...... + .|.. ..+|..+.+. .++..|+.
T Consensus 6 ~r~rrl~~~F~~mLk~~~p~I~~~s~We~vr~~~e~-~~~fkav~~E~eR~~lFee 60 (77)
T 2cqn_A 6 SGMKRKESAFKSMLKQAAPPIELDAVWEDIRERFVK-EPAFEDITLESERKRIFKD 60 (77)
T ss_dssp CSHHHHHHHHHHHHHTCSSCCCTTCCHHHHHHHHTT-SHHHHTCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHcc-CHHHHhcCCHHHHHHHHHH
Confidence 3567789999999998877665541 1 2222 2478888764 55566654
No 48
>2crj_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; structural DNA-binding protein BRAF35, DNA-bending; NMR {Mus musculus}
Probab=42.26 E-value=46 Score=18.83 Aligned_cols=38 Identities=16% Similarity=0.210 Sum_probs=27.9
Q ss_pred HHHHHHHHHhCCCCCCChHHHHHHHHHHHHhCChhHHHH
Q 040219 57 TVYRSLVKVYHPDLSGNGRDFTKIHNAYETLSDPKARVV 95 (100)
Q Consensus 57 ~ayr~l~~~~hPD~~~~~~~~~~i~~Ay~~L~dp~~R~~ 95 (100)
+.+|..++.-||+.. ..+....|.+.|..|++.++...
T Consensus 20 ~~~r~~~~~~~p~~~-~~eisk~lg~~Wk~ls~eeK~~Y 57 (92)
T 2crj_A 20 NERREQIRTRHPDLP-FPEITKMLGAEWSKLQPAEKQRY 57 (92)
T ss_dssp HHHHHHHHHHCTTCC-HHHHHHHHHHHHHTCCTTHHHHH
T ss_pred HHHHHHHHHHCCCCC-HHHHHHHHHHHHHcCCHHHHHHH
Confidence 456666777789854 46788899999999997665443
No 49
>2eqz_A High mobility group protein B3; HMG-box domain, mobility group protein 2A, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=41.89 E-value=37 Score=18.97 Aligned_cols=38 Identities=16% Similarity=0.120 Sum_probs=27.8
Q ss_pred HHHHHHHHHHhCCCCCC-ChHHHHHHHHHHHHhCChhHH
Q 040219 56 KTVYRSLVKVYHPDLSG-NGRDFTKIHNAYETLSDPKAR 93 (100)
Q Consensus 56 k~ayr~l~~~~hPD~~~-~~~~~~~i~~Ay~~L~dp~~R 93 (100)
.+..|..++.-||+... ..+....|.+.|..|++.++.
T Consensus 27 ~~~~r~~~k~~~p~~~~~~~eisk~lg~~Wk~ls~~eK~ 65 (86)
T 2eqz_A 27 VQTCREEHKKKNPEVPVNFAEFSKKCSERWKTMSGKEKS 65 (86)
T ss_dssp HHHHHHHHHHHCTTSCCCHHHHHHHHHHHHHSSCHHHHH
T ss_pred HHHHHHHHHHHCCCCCCcHHHHHHHHHHHHHhCCHHHHH
Confidence 34556666777998764 367889999999999865543
No 50
>1wz6_A HMG-box transcription factor BBX; bobby SOX homolog, HMG_BOX domain, structural genomics, NPPSFA, riken structural genomics/proteomics initiative; NMR {Mus musculus}
Probab=40.84 E-value=45 Score=18.32 Aligned_cols=37 Identities=24% Similarity=0.283 Sum_probs=27.0
Q ss_pred HHHHHHHHHHhCCCCCCChHHHHHHHHHHHHhCChhHH
Q 040219 56 KTVYRSLVKVYHPDLSGNGRDFTKIHNAYETLSDPKAR 93 (100)
Q Consensus 56 k~ayr~l~~~~hPD~~~~~~~~~~i~~Ay~~L~dp~~R 93 (100)
.+.++..++.-||+.. ..+....|.+.|..|++.++.
T Consensus 19 ~~~~r~~~~~~~p~~~-~~eisk~lg~~Wk~ls~~eK~ 55 (82)
T 1wz6_A 19 CKRHRSLVRQEHPRLD-NRGATKILADWWAVLDPKEKQ 55 (82)
T ss_dssp HHHHHHHHHHHCSSSC-TTHHHHHHHHHHHTCCHHHHH
T ss_pred HHHHHHHHHHHCCCCC-HHHHHHHHHHHHhhCCHHHHH
Confidence 3456667777889854 457888999999999865443
No 51
>1ug2_A 2610100B20RIK gene product; hypothetical protein, MYB-like DNA binding domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.4.1.3
Probab=39.68 E-value=21 Score=21.26 Aligned_cols=22 Identities=18% Similarity=0.443 Sum_probs=18.5
Q ss_pred CCCHHHHHHHHHHHHHHhCCCC
Q 040219 49 TTMISEIKTVYRSLVKVYHPDL 70 (100)
Q Consensus 49 ~a~~~eIk~ayr~l~~~~hPD~ 70 (100)
+-+.++|+..|++|++.+|-..
T Consensus 67 Nks~nqV~~RFq~Lm~Lf~~~~ 88 (95)
T 1ug2_A 67 NKTPVEVSHRFRELMQLFHTAC 88 (95)
T ss_dssp SCCHHHHHHHHHHHHHHHHHCS
T ss_pred cCCHHHHHHHHHHHHHHHHHHh
Confidence 4689999999999999887544
No 52
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=39.60 E-value=25 Score=19.62 Aligned_cols=21 Identities=10% Similarity=0.061 Sum_probs=18.0
Q ss_pred ccccCCCCCHHHHHHHHHHHH
Q 040219 43 VLRIEPTTMISEIKTVYRSLV 63 (100)
Q Consensus 43 iLgv~~~a~~~eIk~ayr~l~ 63 (100)
|=||+.+++.++|++.|.+.-
T Consensus 6 v~nLp~~~te~~l~~~F~~~G 26 (91)
T 2lxi_A 6 LRMLPQAATEDDIRGQLQSHG 26 (91)
T ss_dssp EETCCSSCCHHHHHHHHHHHT
T ss_pred EeCCCCCCCHHHHHHHHHHhC
Confidence 348999999999999998864
No 53
>1vq8_S 50S ribosomal protein L23P; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: d.12.1.1 PDB: 1vq4_S* 1vq5_S* 1vq6_S* 1vq7_S* 1s72_S* 1vq9_S* 1vqk_S* 1vql_S* 1vqm_S* 1vqn_S* 1vqo_S* 1vqp_S* 1yhq_S* 1yi2_S* 1yij_S* 1yit_S* 1yj9_S* 1yjn_S* 1yjw_S* 2otj_S* ...
Probab=39.56 E-value=22 Score=20.64 Aligned_cols=21 Identities=5% Similarity=0.090 Sum_probs=18.4
Q ss_pred ccccCCCCCHHHHHHHHHHHH
Q 040219 43 VLRIEPTTMISEIKTVYRSLV 63 (100)
Q Consensus 43 iLgv~~~a~~~eIk~ayr~l~ 63 (100)
+|-|+++++..|||+|-.++-
T Consensus 26 ~F~V~~~AnK~qIK~ave~lf 46 (85)
T 1vq8_S 26 QFAVDDRASKGEVADAVEEQY 46 (85)
T ss_dssp EEEECTTCCHHHHHHHHHHHH
T ss_pred EEEECCCCCHHHHHHHHHHHh
Confidence 678999999999999988763
No 54
>2yrq_A High mobility group protein B1; HMG box domain, DNA binding, helix-turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=39.14 E-value=51 Score=20.87 Aligned_cols=39 Identities=21% Similarity=0.143 Sum_probs=29.1
Q ss_pred HHHHHHHHHHhCCCC-CCChHHHHHHHHHHHHhCChhHHH
Q 040219 56 KTVYRSLVKVYHPDL-SGNGRDFTKIHNAYETLSDPKARV 94 (100)
Q Consensus 56 k~ayr~l~~~~hPD~-~~~~~~~~~i~~Ay~~L~dp~~R~ 94 (100)
.+.++..++.-||+. ....+....|.+.|..|++.++..
T Consensus 27 ~~~~r~~~k~~~p~~~~~~~eisk~lg~~Wk~ls~~eK~~ 66 (173)
T 2yrq_A 27 VQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGK 66 (173)
T ss_dssp HHHHHHHHHHHCTTCCCCHHHHHHHHHHHHHHSCHHHHHH
T ss_pred HHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHhCCHHHHHH
Confidence 445666677889996 345688899999999999766543
No 55
>1hme_A High mobility group protein fragment-B; DNA-binding; NMR {Rattus norvegicus} SCOP: a.21.1.1 PDB: 1hmf_A 1nhm_A 1nhn_A 1hsm_A 1hsn_A 1j3c_A 1j3d_A 2yqi_A
Probab=38.51 E-value=48 Score=17.90 Aligned_cols=37 Identities=24% Similarity=0.343 Sum_probs=26.8
Q ss_pred HHHHHHHHHhCCCCCCChHHHHHHHHHHHHhCChhHHH
Q 040219 57 TVYRSLVKVYHPDLSGNGRDFTKIHNAYETLSDPKARV 94 (100)
Q Consensus 57 ~ayr~l~~~~hPD~~~~~~~~~~i~~Ay~~L~dp~~R~ 94 (100)
+.++..++.-||+.. ..+....|.+.|..|++.++..
T Consensus 19 ~~~r~~~~~~~p~~~-~~eisk~lg~~Wk~ls~~eK~~ 55 (77)
T 1hme_A 19 SEYRPKIKGEHPGLS-IGDVAKKLGEMWNNTAADDKQP 55 (77)
T ss_dssp HHHHHHHHHHCTTCC-HHHHHHHHHHHHHHSCGGGSHH
T ss_pred HHHHHHHHHHCCCCC-HHHHHHHHHHHHHhCCHHHHHH
Confidence 445666667789743 4678899999999999765543
No 56
>2e6o_A HMG box-containing protein 1; HMG-box domain, HMG-box transcription factor 1, high mobility group box transcription factor 1, structural genomics; NMR {Homo sapiens}
Probab=37.74 E-value=52 Score=18.39 Aligned_cols=37 Identities=14% Similarity=0.176 Sum_probs=26.7
Q ss_pred HHHHHHHHHHhCCCCCCChHHHHHHHHHHHHhCChhHH
Q 040219 56 KTVYRSLVKVYHPDLSGNGRDFTKIHNAYETLSDPKAR 93 (100)
Q Consensus 56 k~ayr~l~~~~hPD~~~~~~~~~~i~~Ay~~L~dp~~R 93 (100)
.+.++..++.-||+. ...+....|.+.|..|++.++.
T Consensus 29 ~~~~r~~~~~~~P~~-~~~eisk~lg~~Wk~ls~eeK~ 65 (87)
T 2e6o_A 29 AKKYRVEYTQMYPGK-DNRAISVILGDRWKKMKNEERR 65 (87)
T ss_dssp HHHTHHHHHHHCTTS-CHHHHHHHHHHHHHHSCHHHHH
T ss_pred HHHHHHHHHHHCCCC-CHHHHHHHHHHHHhhCCHHHHH
Confidence 345666677778984 3457888899999999865544
No 57
>3r8s_T 50S ribosomal protein L23; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 3fik_T 3j19_T 2wwq_T 3oat_T* 3oas_T* 3ofd_T 3ofc_T 3ofr_T* 3ofz_T* 3og0_T 3ofq_T 3r8t_T 2j28_T 3e1b_M 3e1d_M 3iy9_T 3i1n_T 1p85_R 1p86_R 1vs8_T ...
Probab=37.49 E-value=24 Score=20.79 Aligned_cols=20 Identities=30% Similarity=0.461 Sum_probs=17.6
Q ss_pred ccccCCCCCHHHHHHHHHHH
Q 040219 43 VLRIEPTTMISEIKTVYRSL 62 (100)
Q Consensus 43 iLgv~~~a~~~eIk~ayr~l 62 (100)
+|-|+++|+..|||+|-..+
T Consensus 31 ~F~V~~~AnK~eIK~AVE~l 50 (93)
T 3r8s_T 31 VLKVAKDATKAEIKAAVQKL 50 (93)
T ss_dssp EEEECSSCCHHHHHHHHHHH
T ss_pred EEEECCCCCHHHHHHHHHHH
Confidence 47899999999999998776
No 58
>1hry_A Human SRY; DNA, DNA-binding protein, DNA binding protein/DNA complex; HET: DNA; NMR {Homo sapiens} SCOP: a.21.1.1 PDB: 1hrz_A*
Probab=37.23 E-value=50 Score=17.76 Aligned_cols=37 Identities=11% Similarity=0.190 Sum_probs=26.7
Q ss_pred HHHHHHHHHHhCCCCCCChHHHHHHHHHHHHhCChhHH
Q 040219 56 KTVYRSLVKVYHPDLSGNGRDFTKIHNAYETLSDPKAR 93 (100)
Q Consensus 56 k~ayr~l~~~~hPD~~~~~~~~~~i~~Ay~~L~dp~~R 93 (100)
.+.++..++.-||+.. ..+....|.+.|..|++.++.
T Consensus 16 ~~~~r~~~~~~~p~~~-~~eisk~lg~~Wk~ls~~eK~ 52 (76)
T 1hry_A 16 SRDQRRKMALENPRMR-NSEISKQLGYQWKMLTEAEKW 52 (76)
T ss_dssp HHHHHHHHHHHCSCCS-SSHHHHHHHHHHHTCCHHHHH
T ss_pred HHHHHHHHHHHCcCCC-HHHHHHHHHhHHHhCCHHHHH
Confidence 3455666777799864 457889999999999865443
No 59
>2cs1_A PMS1 protein homolog 1; DNA mismatch repair protein PMS1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=36.59 E-value=46 Score=18.83 Aligned_cols=38 Identities=18% Similarity=0.143 Sum_probs=27.3
Q ss_pred HHHHHHHHHHhCCCCCCChHHHHHHHHHHHHhCChhHHH
Q 040219 56 KTVYRSLVKVYHPDLSGNGRDFTKIHNAYETLSDPKARV 94 (100)
Q Consensus 56 k~ayr~l~~~~hPD~~~~~~~~~~i~~Ay~~L~dp~~R~ 94 (100)
.+..|..++.-||+.. ..+....|.+.|..|++.++..
T Consensus 19 ~~~~r~~~~~~~p~~~-~~eisk~lg~~Wk~ls~eeK~~ 56 (92)
T 2cs1_A 19 VQDHRPQFLIENPKTS-LEDATLQIEELWKTLSEEEKLK 56 (92)
T ss_dssp HHHHHHHHHHHCCSSC-HHHHHHHHHHHHHSSCHHHHHH
T ss_pred HHHHHHHHHHHCCCCC-HHHHHHHHHHHHhcCCHHHHHH
Confidence 3455666777789864 4678889999999998655443
No 60
>3j21_T 50S ribosomal protein L23P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=36.53 E-value=26 Score=20.37 Aligned_cols=21 Identities=10% Similarity=0.233 Sum_probs=18.1
Q ss_pred ccccCCCCCHHHHHHHHHHHH
Q 040219 43 VLRIEPTTMISEIKTVYRSLV 63 (100)
Q Consensus 43 iLgv~~~a~~~eIk~ayr~l~ 63 (100)
+|-|++.++..|||+|-.++-
T Consensus 27 ~F~Vd~~AnK~qIK~AVe~lf 47 (86)
T 3j21_T 27 TFIVDRRATKQDIKRAVEEIF 47 (86)
T ss_dssp EEEECTTCCHHHHHHHHHHHT
T ss_pred EEEEcCCCCHHHHHHHHHHHc
Confidence 478899999999999988763
No 61
>2zjr_Q 50S ribosomal protein L23; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: d.12.1.1 PDB: 1sm1_R* 2aar_R 2d3o_R 2zjp_Q* 2zjq_Q 1nkw_R 3cf5_Q* 3dll_Q* 3pio_Q* 3pip_Q* 1nwy_R* 1nwx_R* 1xbp_R* 1pnu_R 1pny_R 1vor_U 1vou_U 1vow_U 1voy_U 1vp0_U
Probab=36.27 E-value=25 Score=20.77 Aligned_cols=21 Identities=19% Similarity=0.328 Sum_probs=18.7
Q ss_pred ccccCCCCCHHHHHHHHHHHH
Q 040219 43 VLRIEPTTMISEIKTVYRSLV 63 (100)
Q Consensus 43 iLgv~~~a~~~eIk~ayr~l~ 63 (100)
+|.|+++++..|||+|-.++-
T Consensus 26 ~F~V~~~anK~eIK~aVE~lf 46 (95)
T 2zjr_Q 26 SFWVSPKATKTEIKDAIQQAF 46 (95)
T ss_dssp EEEECSSCTHHHHHHHHHHHH
T ss_pred EEEEcCCCCHHHHHHHHHHHh
Confidence 788999999999999988764
No 62
>3tve_T 50S ribosomal protein L23; RNA, ribosome, tRNA, translation, mRNA; 3.10A {Thermus thermophilus} PDB: 3pyr_T 3pyo_T 3pyv_T 3pyt_T 3tvh_T 1n88_A 1vsa_R 1vsp_R 2hgj_W 2hgq_W 2hgu_W 2j01_X 2j03_X 2jl6_X 2jl8_X 2v47_X 2v49_X 2wdi_X 2wdj_X 2wdl_X ...
Probab=34.77 E-value=28 Score=20.42 Aligned_cols=20 Identities=20% Similarity=0.368 Sum_probs=17.8
Q ss_pred ccccCCCCCHHHHHHHHHHH
Q 040219 43 VLRIEPTTMISEIKTVYRSL 62 (100)
Q Consensus 43 iLgv~~~a~~~eIk~ayr~l 62 (100)
+|-|++.++..|||+|-.++
T Consensus 25 ~F~V~~~AnK~qIK~aVe~l 44 (92)
T 3tve_T 25 TFWVHPKATKTEIKNAVETA 44 (92)
T ss_dssp EEEECTTCCHHHHHHHHHHH
T ss_pred EEEECCCCCHHHHHHHHHHH
Confidence 57899999999999998776
No 63
>2lef_A LEF-1 HMG, protein (lymphoid enhancer-binding factor); LEF1, HMG, TCR-A, transcription factor; HET: DNA; NMR {Mus musculus} SCOP: a.21.1.1
Probab=33.76 E-value=46 Score=18.50 Aligned_cols=36 Identities=11% Similarity=-0.028 Sum_probs=25.8
Q ss_pred HHHHHHHHHhCCCCCCChHHHHHHHHHHHHhCChhHH
Q 040219 57 TVYRSLVKVYHPDLSGNGRDFTKIHNAYETLSDPKAR 93 (100)
Q Consensus 57 ~ayr~l~~~~hPD~~~~~~~~~~i~~Ay~~L~dp~~R 93 (100)
+.++..++.-||+. ...+....|.+.|..|++.++.
T Consensus 15 ~~~r~~~~~~~P~~-~~~eisk~lg~~Wk~ls~eeK~ 50 (86)
T 2lef_A 15 KEMRANVVAESTLK-ESAAINQILGRRWHALSREEQA 50 (86)
T ss_dssp HHHHHHHHHHSSCC-CHHHHHHHHHHHHTTSCHHHHH
T ss_pred HHHHHHHHHHCCCC-CHHHHHHHHHHHHhcCCHHHHH
Confidence 44566667778985 3467888899999999865443
No 64
>1gt0_D Transcription factor SOX-2; POU factors, SOX proteins; 2.6A {Mus musculus} SCOP: a.21.1.1 PDB: 2le4_A 1o4x_B
Probab=33.34 E-value=42 Score=18.32 Aligned_cols=36 Identities=17% Similarity=0.247 Sum_probs=25.2
Q ss_pred HHHHHHHHHhCCCCCCChHHHHHHHHHHHHhCChhHH
Q 040219 57 TVYRSLVKVYHPDLSGNGRDFTKIHNAYETLSDPKAR 93 (100)
Q Consensus 57 ~ayr~l~~~~hPD~~~~~~~~~~i~~Ay~~L~dp~~R 93 (100)
+.++..++.-||+.. ..+....|.+.|..|++.++.
T Consensus 15 ~~~r~~~~~~~p~~~-~~eisk~lg~~Wk~ls~eeK~ 50 (80)
T 1gt0_D 15 RGQRRKMAQENPKMH-NSEISKRLGAEWKLLSETEKR 50 (80)
T ss_dssp HHHHHHHHTTSTTSC-HHHHHHHHHHHHTTSCHHHHH
T ss_pred HHHHHHHHHHCCCCC-HHHHHHHHHHHHHhCCHHHHH
Confidence 445666667788743 457788889999998865443
No 65
>1k99_A Upstream binding factor 1; alpha-helix, L-shape, DNA binding protein; NMR {Homo sapiens} SCOP: a.21.1.1
Probab=32.36 E-value=74 Score=18.31 Aligned_cols=38 Identities=21% Similarity=0.219 Sum_probs=28.2
Q ss_pred HHHHHHHHHhCCCCCCChHHHHHHHHHHHHhCChhHHHH
Q 040219 57 TVYRSLVKVYHPDLSGNGRDFTKIHNAYETLSDPKARVV 95 (100)
Q Consensus 57 ~ayr~l~~~~hPD~~~~~~~~~~i~~Ay~~L~dp~~R~~ 95 (100)
+..+..++.-+|+.. ..+....|.+.|..|++.++...
T Consensus 23 ~~~r~~ik~~~P~~~-~~eisk~lg~~Wk~ls~eeK~~Y 60 (99)
T 1k99_A 23 MEKRAKYAKLHPEMS-NLDLTKILSKKYKELPEKKKMKY 60 (99)
T ss_dssp HHHHHHHHTTCTTSC-SHHHHHHHHHHHHHSCSTTHHHH
T ss_pred HHHHHHHHHHCCCCC-HHHHHHHHHHHHHhCCHHHHHHH
Confidence 445666667788853 57889999999999998765443
No 66
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=31.91 E-value=42 Score=17.42 Aligned_cols=20 Identities=15% Similarity=0.213 Sum_probs=17.0
Q ss_pred cccCCCCCHHHHHHHHHHHH
Q 040219 44 LRIEPTTMISEIKTVYRSLV 63 (100)
Q Consensus 44 Lgv~~~a~~~eIk~ayr~l~ 63 (100)
=||+.+.+.++|+..|.+..
T Consensus 5 ~nLp~~~t~~~l~~~F~~~G 24 (75)
T 1iqt_A 5 GGLSPDTPEEKIREYFGGFG 24 (75)
T ss_dssp SCCCSSCCHHHHHHHHHHHS
T ss_pred eCCCCCCCHHHHHHHHHhcC
Confidence 47889999999999998763
No 67
>1aab_A High mobility group protein; HMG-BOX, DNA-binding; NMR {Rattus norvegicus} SCOP: a.21.1.1
Probab=30.75 E-value=30 Score=19.18 Aligned_cols=38 Identities=24% Similarity=0.145 Sum_probs=26.9
Q ss_pred HHHHHHHHHhCCCCCC-ChHHHHHHHHHHHHhCChhHHH
Q 040219 57 TVYRSLVKVYHPDLSG-NGRDFTKIHNAYETLSDPKARV 94 (100)
Q Consensus 57 ~ayr~l~~~~hPD~~~-~~~~~~~i~~Ay~~L~dp~~R~ 94 (100)
+..|..++.-||+... ..+....|.+.|..|++.++..
T Consensus 20 ~~~r~~~~~~~p~~~~~~~eisk~lg~~Wk~ls~~eK~~ 58 (83)
T 1aab_A 20 QTSREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGK 58 (83)
T ss_dssp HHHHHHHTTSCTTTCCCSSSSHHHHHHHHTTSCTTHHHH
T ss_pred HHHHHHHHHHCCCCCCcHHHHHHHHHHHHHhCCHHHHHH
Confidence 4456666677888653 4577888999999998765443
No 68
>1j46_A SRY, sex-determining region Y protein; MALE sex determining factor, SRY, sex-reversal mutation; NMR {Homo sapiens} SCOP: a.21.1.1 PDB: 1j47_A
Probab=30.40 E-value=55 Score=18.14 Aligned_cols=37 Identities=11% Similarity=0.190 Sum_probs=25.9
Q ss_pred HHHHHHHHHHhCCCCCCChHHHHHHHHHHHHhCChhHH
Q 040219 56 KTVYRSLVKVYHPDLSGNGRDFTKIHNAYETLSDPKAR 93 (100)
Q Consensus 56 k~ayr~l~~~~hPD~~~~~~~~~~i~~Ay~~L~dp~~R 93 (100)
.+.++..++.-||+.. ..+....|.+.|..|++.++.
T Consensus 16 ~~~~r~~~~~~~P~~~-~~eisk~lg~~Wk~ls~eeK~ 52 (85)
T 1j46_A 16 SRDQRRKMALENPRMR-NSEISKQLGYQWKMLTEAEKW 52 (85)
T ss_dssp HHHHHHHHHHHSTTSC-HHHHHHHHHHHHTTSCHHHHH
T ss_pred HHHHHHHHHHHCCCCC-HHHHHHHHHHHHHHCCHHHHH
Confidence 3455666677788753 457788889999999865443
No 69
>2co9_A Thymus high mobility group box protein TOX; TOX protein, HMG box domain, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=30.29 E-value=54 Score=18.99 Aligned_cols=37 Identities=14% Similarity=0.236 Sum_probs=26.0
Q ss_pred HHHHHHHHHhCCCCCCChHHHHHHHHHHHHhCChhHHH
Q 040219 57 TVYRSLVKVYHPDLSGNGRDFTKIHNAYETLSDPKARV 94 (100)
Q Consensus 57 ~ayr~l~~~~hPD~~~~~~~~~~i~~Ay~~L~dp~~R~ 94 (100)
+.++..++.-||+.. ..+....|.+.|..|++.++..
T Consensus 30 ~~~r~~i~~~~P~~~-~~eisk~lg~~Wk~ls~eeK~~ 66 (102)
T 2co9_A 30 RDTQAAIKGQNPNAT-FGEVSKIVASMWDGLGEEQKQV 66 (102)
T ss_dssp HHHHHHHHHHCTTSC-HHHHHHHHHHHHTTCCHHHHHH
T ss_pred HHHHHHHHHHCCCCC-HHHHHHHHHHHHccCCHHHHHH
Confidence 445666667789863 4577888889999888655443
No 70
>3tmm_A Transcription factor A, mitochondrial; HMG, high mobility group, transcription, LSP1, mitochon transcription-DNA complex; HET: DNA; 2.50A {Homo sapiens}
Probab=29.40 E-value=76 Score=21.40 Aligned_cols=40 Identities=18% Similarity=0.285 Sum_probs=29.0
Q ss_pred HHHHHHHHHHhCCCCCCChHHHHHHHHHHHHhCChhHHHHh
Q 040219 56 KTVYRSLVKVYHPDLSGNGRDFTKIHNAYETLSDPKARVVY 96 (100)
Q Consensus 56 k~ayr~l~~~~hPD~~~~~~~~~~i~~Ay~~L~dp~~R~~Y 96 (100)
-+.+|..++.-||+.. ..+....|.+.|..|++.++....
T Consensus 53 ~~e~r~~~k~~~P~~~-~~eisk~lge~Wk~Ls~~EK~~y~ 92 (238)
T 3tmm_A 53 SKEQLPIFKAQNPDAK-TTELIRRIAQRWRELPDSKKKIYQ 92 (238)
T ss_dssp HHHHHHHHHHHSTTSC-HHHHHHHHHHHHHHSCHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCC-HHHHHHHHHHHHHhCCHHHHHHHH
Confidence 3455666777899876 567888899999999976555443
No 71
>3tq6_A Transcription factor A, mitochondrial; transcription, transcription regulation, mitochondrion; HET: DNA BRU 1PE; 2.45A {Homo sapiens}
Probab=29.00 E-value=82 Score=20.87 Aligned_cols=39 Identities=18% Similarity=0.291 Sum_probs=28.3
Q ss_pred HHHHHHHHHhCCCCCCChHHHHHHHHHHHHhCChhHHHHh
Q 040219 57 TVYRSLVKVYHPDLSGNGRDFTKIHNAYETLSDPKARVVY 96 (100)
Q Consensus 57 ~ayr~l~~~~hPD~~~~~~~~~~i~~Ay~~L~dp~~R~~Y 96 (100)
+.++..++.-||+.. ..+....|.+.|..|++.++....
T Consensus 22 ~~~r~~~k~~~P~~~-~~eisk~lge~Wk~Ls~~EK~~y~ 60 (214)
T 3tq6_A 22 KEQLPIFKAQNPDAK-TTELIRRIAQRWRELPDSKKKIYQ 60 (214)
T ss_dssp HHHHHHHHHHCTTSC-HHHHHHHHHHHHHHSCHHHHHHHH
T ss_pred HHHHHHHHHhCCCCC-HHHHHHHHHHHHHccCHHhhhHHH
Confidence 455666777799865 567888889999999976554443
No 72
>2xpn_B SPT6, chromatin structure modulator; transcription, elongation, histone chaperone, RNA polymerase mRNA export; 1.95A {Encephalitozoon cuniculi} PDB: 2xpo_B
Probab=27.52 E-value=14 Score=16.54 Aligned_cols=10 Identities=10% Similarity=0.385 Sum_probs=7.5
Q ss_pred CcccccccCC
Q 040219 39 SLYEVLRIEP 48 (100)
Q Consensus 39 ~~y~iLgv~~ 48 (100)
=+|+|+|...
T Consensus 4 lFyEIFGtG~ 13 (26)
T 2xpn_B 4 MFFEIFGTGE 13 (26)
T ss_pred EEEEEecCCc
Confidence 4799999754
No 73
>2gzk_A Sex-determining region on Y / HMGB1; protein-DNA complex, HMG BOX, amphoterin, DNA/structural protein complex; NMR {Homo sapiens} SCOP: a.21.1.1 a.21.1.1
Probab=26.75 E-value=1.1e+02 Score=18.87 Aligned_cols=36 Identities=11% Similarity=0.161 Sum_probs=25.4
Q ss_pred HHHHHHHhCCCCCCChHHHHHHHHHHHHhCChhHHHH
Q 040219 59 YRSLVKVYHPDLSGNGRDFTKIHNAYETLSDPKARVV 95 (100)
Q Consensus 59 yr~l~~~~hPD~~~~~~~~~~i~~Ay~~L~dp~~R~~ 95 (100)
.+..+..-||+ ....+....|.+.|..|++.++...
T Consensus 19 ~~~ki~~~~P~-~~~~eisk~lg~~Wk~ls~~eK~~y 54 (159)
T 2gzk_A 19 QRRKMALENPR-MRNSEISKQLGYQWKMLTEAEKWPF 54 (159)
T ss_dssp HHHHHHHHCSS-CCHHHHHHHHHHHHHHSCHHHHHHH
T ss_pred HHHHHHHHCCC-CCHHHHHHHHHHHHHHhhHHHhccH
Confidence 34445567998 3456788899999999987655443
No 74
>1r5q_A KAI A, circadian oscillation regulator; four-helix-bundle, gene regulation; 2.00A {Nostoc SP} SCOP: a.186.1.1
Probab=26.59 E-value=1.1e+02 Score=18.29 Aligned_cols=21 Identities=19% Similarity=0.352 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHhCCCCCCC
Q 040219 53 SEIKTVYRSLVKVYHPDLSGN 73 (100)
Q Consensus 53 ~eIk~ayr~l~~~~hPD~~~~ 73 (100)
.+++..||.+.+.|-.+-..-
T Consensus 12 ~~L~~~YR~ill~YF~~d~~~ 32 (102)
T 1r5q_A 12 QQLKSDYRQILLSYFTTDKAL 32 (102)
T ss_dssp HHHHHHHHHHHHHTTSCC--C
T ss_pred HHHHHHHHHHHHHHhCCcHHH
Confidence 578999999999996654443
No 75
>3u2b_C Transcription factor SOX-4; HMG domain, transcriptional regulation, transcription-DNA CO; HET: DNA; 2.40A {Mus musculus} SCOP: a.21.1.1
Probab=26.36 E-value=83 Score=16.92 Aligned_cols=37 Identities=16% Similarity=0.264 Sum_probs=26.3
Q ss_pred HHHHHHHHHHhCCCCCCChHHHHHHHHHHHHhCChhHH
Q 040219 56 KTVYRSLVKVYHPDLSGNGRDFTKIHNAYETLSDPKAR 93 (100)
Q Consensus 56 k~ayr~l~~~~hPD~~~~~~~~~~i~~Ay~~L~dp~~R 93 (100)
.+.++..++.-||+.. ..+....|.+.|..|++.++.
T Consensus 14 ~~~~r~~~~~~~p~~~-~~eisk~lg~~Wk~ls~~eK~ 50 (79)
T 3u2b_C 14 SQIERRKIMEQSPDMH-NAEISKRLGKRWKLLKDSDKI 50 (79)
T ss_dssp HHHHHHHHHTTSTTSC-HHHHHHHHHHHHHHSCHHHHH
T ss_pred HHHHHHHHHHHCcCCC-HHHHHHHHHHHHHhCCHHHHH
Confidence 4456666777788754 457888899999999865443
No 76
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=25.52 E-value=62 Score=17.23 Aligned_cols=21 Identities=10% Similarity=0.033 Sum_probs=18.0
Q ss_pred ccccCCCCCHHHHHHHHHHHH
Q 040219 43 VLRIEPTTMISEIKTVYRSLV 63 (100)
Q Consensus 43 iLgv~~~a~~~eIk~ayr~l~ 63 (100)
|=||+.+++.++|+..|.+..
T Consensus 11 V~nLp~~~t~~~l~~~F~~~~ 31 (87)
T 2hzc_A 11 VGNIPFGITEEAMMDFFNAQM 31 (87)
T ss_dssp EESCCTTCCHHHHHHHHHHHH
T ss_pred EeCCCCCCCHHHHHHHHHHHh
Confidence 457899999999999998874
No 77
>4euw_A Transcription factor SOX-9; protein-DNA complex, HMG domain, activator, DNA-binding, NUC transcription; HET: DNA; 2.77A {Homo sapiens}
Probab=23.20 E-value=94 Score=18.10 Aligned_cols=38 Identities=16% Similarity=0.180 Sum_probs=27.6
Q ss_pred HHHHHHHHHHhCCCCCCChHHHHHHHHHHHHhCChhHHH
Q 040219 56 KTVYRSLVKVYHPDLSGNGRDFTKIHNAYETLSDPKARV 94 (100)
Q Consensus 56 k~ayr~l~~~~hPD~~~~~~~~~~i~~Ay~~L~dp~~R~ 94 (100)
.+.+|..++.-||+.. ..+....|.+.|..|++.++..
T Consensus 41 ~~~~r~~~k~~~P~~~-~~eisk~lg~~Wk~ls~eeK~~ 78 (106)
T 4euw_A 41 AQAARRKLADQYPHLH-NAELSKTLGKLWRLLNESEKRP 78 (106)
T ss_dssp HHHHHHHHHHHCTTSC-HHHHHHHHHHHHTTCCHHHHHH
T ss_pred HHHHHHHHHHHCCCCC-HHHHHHHHHHHHHcCCHHHHHH
Confidence 5566777788889754 3578888899999998655443
No 78
>3b0c_W CENP-W, centromere protein W; histone fold, DNA binding, DNA binding protein; HET: CIT; 2.20A {Gallus gallus} PDB: 3b0d_W* 3vh5_W 3vh6_W
Probab=22.80 E-value=1e+02 Score=16.92 Aligned_cols=29 Identities=17% Similarity=0.218 Sum_probs=17.6
Q ss_pred HHHHHHHHhCCCCCCChHHHHHHHHHHHH
Q 040219 58 VYRSLVKVYHPDLSGNGRDFTKIHNAYET 86 (100)
Q Consensus 58 ayr~l~~~~hPD~~~~~~~~~~i~~Ay~~ 86 (100)
.-.+++++.|||..-+.+....++++++.
T Consensus 9 ~V~rI~K~~~p~~~is~~A~~~i~~~~~~ 37 (76)
T 3b0c_W 9 TLRKIIKKHKPHLRLAANTDLLVHLSFLL 37 (76)
T ss_dssp HHHHHHHHHCTTCEECTTHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCccCHHHHHHHHHHHHH
Confidence 34678888999865454544455554444
No 79
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=22.41 E-value=55 Score=16.97 Aligned_cols=19 Identities=11% Similarity=0.296 Sum_probs=16.0
Q ss_pred cccCCCCCHHHHHHHHHHH
Q 040219 44 LRIEPTTMISEIKTVYRSL 62 (100)
Q Consensus 44 Lgv~~~a~~~eIk~ayr~l 62 (100)
=||+.+.+.++|+..|.+.
T Consensus 5 ~nlp~~~t~~~l~~~F~~~ 23 (75)
T 2mss_A 5 GGLSVNTTVEDVKHYFEQF 23 (75)
T ss_dssp ECCCSSCCHHHHHHHHHTT
T ss_pred ecCCCCCCHHHHHHHHHhc
Confidence 3788999999999988764
No 80
>3bbz_A P protein, phosphoprotein; molten globule, viral protein, replication; 2.10A {Mumps virus}
Probab=21.69 E-value=70 Score=16.65 Aligned_cols=23 Identities=4% Similarity=0.264 Sum_probs=16.6
Q ss_pred HHHHHHHHHHhCChhHHHHhhcc
Q 040219 77 FTKIHNAYETLSDPKARVVYDMS 99 (100)
Q Consensus 77 ~~~i~~Ay~~L~dp~~R~~Yd~~ 99 (100)
....+-+-+-+++|..|..|+..
T Consensus 5 ltl~~l~kdCi~np~~r~~Fe~k 27 (49)
T 3bbz_A 5 VMITKMITDSVANPQMKQAFEQR 27 (49)
T ss_dssp HHHHHHHHHHCCSHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHH
Confidence 44455667788889888888753
No 81
>3u5e_X 60S ribosomal protein L25; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 2wwa_K 2ww9_K 3izc_X 3izs_X 2wwb_K 3o5h_W 3o58_W 3u5i_X 4b6a_X 1s1i_T 3jyw_T
Probab=21.49 E-value=63 Score=20.56 Aligned_cols=19 Identities=16% Similarity=0.190 Sum_probs=14.5
Q ss_pred ccCCCCCHHHHHHHHHHHH
Q 040219 45 RIEPTTMISEIKTVYRSLV 63 (100)
Q Consensus 45 gv~~~a~~~eIk~ayr~l~ 63 (100)
-|+.+++..|||+|-..+-
T Consensus 85 ~Vd~~AnK~qIK~AVEklf 103 (142)
T 3u5e_X 85 QVSMKANKYQIKKAVKELY 103 (142)
T ss_dssp EECTTCCHHHHHHHHHHHH
T ss_pred EEcCCCCHHHHHHHHHHHh
Confidence 3667888888988887764
No 82
>1q38_A Fibronectin; amyloid fibril, anastellin, extracellular matrix, dynamic fluctuations, conformational exchange, chaps, cell adhesion; NMR {Homo sapiens} SCOP: b.1.2.1
Probab=21.37 E-value=48 Score=19.34 Aligned_cols=16 Identities=13% Similarity=0.245 Sum_probs=13.3
Q ss_pred CccCcccccccCCCCC
Q 040219 36 TGGSLYEVLRIEPTTM 51 (100)
Q Consensus 36 ~~~~~y~iLgv~~~a~ 51 (100)
+..|-|.|.||.|+.+
T Consensus 35 gh~nSYtIsGLkPGvt 50 (89)
T 1q38_A 35 GHLNSYTIKGLKPGVV 50 (89)
T ss_dssp SSSSCCCCCCCCTTCC
T ss_pred CccceEEEeccCCCcE
Confidence 4578899999999864
No 83
>2lr8_A CAsp8-associated protein 2; structural genomics, northeast structural genomics consortiu PSI-biology, apoptosis; NMR {Homo sapiens}
Probab=26.73 E-value=20 Score=20.17 Aligned_cols=31 Identities=10% Similarity=0.259 Sum_probs=21.5
Q ss_pred cccccccCCCCCHHHHHHHHHHHHHHhCCCC
Q 040219 40 LYEVLRIEPTTMISEIKTVYRSLVKVYHPDL 70 (100)
Q Consensus 40 ~y~iLgv~~~a~~~eIk~ayr~l~~~~hPD~ 70 (100)
-|..|--.-+-+.++|+..|++|++.+|-.+
T Consensus 38 tfa~iA~~Lnks~~QV~~RF~~Lm~Lf~kSk 68 (70)
T 2lr8_A 38 TFAYLAAKLDKNPNQVSERFQQLMKLFEKSK 68 (70)
Confidence 3444443335688999999999998887544
No 84
>1v2z_A Circadian clock protein KAIA homolog; all alpha, riken structural genomics/proteomics initiative, structural genomics; 1.80A {Thermosynechococcus elongatus} SCOP: a.186.1.1 PDB: 1q6a_A 1q6b_A 1suy_A 1sv1_A
Probab=21.18 E-value=1.3e+02 Score=18.21 Aligned_cols=21 Identities=24% Similarity=0.572 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHhCCCCCC
Q 040219 52 ISEIKTVYRSLVKVYHPDLSG 72 (100)
Q Consensus 52 ~~eIk~ayr~l~~~~hPD~~~ 72 (100)
-.+++..||.+++.|-.+-..
T Consensus 18 l~~L~~~YR~ill~YF~~d~~ 38 (111)
T 1v2z_A 18 LDELRSIYRTIVLEYFNTDAK 38 (111)
T ss_dssp HHHHHHHHHHHHHHTTCTTSC
T ss_pred HHHHHHHHHHHHHHHhCCchH
Confidence 457899999999999665544
No 85
>3ioz_B T-cell surface glycoprotein CD3 zeta chain; protein-protein complex, cell membrane, lipoprotein, membran myristate, viral immunoevasion, virulence; 3.70A {Homo sapiens}
Probab=21.13 E-value=36 Score=17.44 Aligned_cols=14 Identities=36% Similarity=0.517 Sum_probs=7.8
Q ss_pred HHHHhCChhHHHHhh
Q 040219 83 AYETLSDPKARVVYD 97 (100)
Q Consensus 83 Ay~~L~dp~~R~~Yd 97 (100)
-|.-|+ +..|.+||
T Consensus 23 ~YneLn-~grreeYD 36 (45)
T 3ioz_B 23 LYNELN-LGRREEYD 36 (45)
T ss_pred HHHHhC-cCchhhhh
Confidence 444444 56666666
No 86
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=20.83 E-value=86 Score=16.91 Aligned_cols=20 Identities=10% Similarity=0.273 Sum_probs=17.1
Q ss_pred ccccCCCCCHHHHHHHHHHH
Q 040219 43 VLRIEPTTMISEIKTVYRSL 62 (100)
Q Consensus 43 iLgv~~~a~~~eIk~ayr~l 62 (100)
|=||+.+.+.++|+..|.+.
T Consensus 14 V~nlp~~~t~~~l~~~F~~~ 33 (90)
T 2dnp_A 14 VGNVSAACTSQELRSLFERR 33 (90)
T ss_dssp EESCCTTCCHHHHHHHHHHH
T ss_pred EeCCCCCCCHHHHHHHHHcC
Confidence 55789999999999988765
No 87
>1r4v_A Hypothetical protein AQ_328; structural genomics, all-alpha, histon fold, PSI, protein ST initiative, midwest center for structural genomics; HET: MSE; 1.90A {Aquifex aeolicus} SCOP: a.22.1.4
Probab=20.02 E-value=1.6e+02 Score=19.31 Aligned_cols=29 Identities=3% Similarity=0.007 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHhCCCCCCChHHHHHHHHH
Q 040219 55 IKTVYRSLVKVYHPDLSGNGRDFTKIHNA 83 (100)
Q Consensus 55 Ik~ayr~l~~~~hPD~~~~~~~~~~i~~A 83 (100)
|--++-+..+..||++++..+.......-
T Consensus 138 L~valARv~K~l~Pernp~~ehwE~a~~v 166 (171)
T 1r4v_A 138 LLLMHADVIKKATGERKPSREAMEFVAQI 166 (171)
T ss_dssp HHHHHHHHHHHHCCCSSCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCCCCHHHHHHHHHH
Confidence 34566788899999988887765554443
Done!