Query 040220
Match_columns 370
No_of_seqs 150 out of 1592
Neff 8.0
Searched_HMMs 29240
Date Mon Mar 25 09:42:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/040220.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/040220hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3kg2_A Glutamate receptor 2; I 100.0 2.6E-43 8.9E-48 375.8 15.8 327 3-352 391-814 (823)
2 1yae_A Glutamate receptor, ion 99.9 1.1E-22 3.8E-27 192.6 12.7 219 4-323 21-292 (312)
3 1pb7_A N-methyl-D-aspartate re 99.9 1.8E-22 6.2E-27 189.9 11.5 186 21-321 62-288 (292)
4 4h5g_A Amino acid ABC superfam 99.9 2.2E-22 7.5E-27 183.5 11.5 200 2-321 19-239 (243)
5 4gvo_A LMO2349 protein; struct 99.9 2.7E-22 9.2E-27 182.9 10.9 197 2-321 16-237 (243)
6 3g3k_A Glutamate receptor, ion 99.9 9.6E-22 3.3E-26 180.1 14.0 198 3-321 11-255 (259)
7 2a5s_A N-methyl-D-aspartate re 99.8 2.3E-20 7.9E-25 174.5 17.3 191 21-323 56-283 (284)
8 2rc8_A Glutamate [NMDA] recept 99.8 1.2E-20 4.2E-25 177.3 14.0 185 22-321 68-290 (294)
9 3i6v_A Periplasmic His/Glu/Gln 99.8 1.5E-20 5E-25 169.9 13.3 189 3-321 13-219 (232)
10 3kzg_A Arginine 3RD transport 99.8 9.1E-20 3.1E-24 164.5 13.7 196 3-322 11-233 (237)
11 3k4u_A Binding component of AB 99.8 2.2E-19 7.6E-24 162.8 15.0 197 3-321 13-230 (245)
12 2v3u_A Glutamate receptor delt 99.8 1.5E-19 5.2E-24 165.4 13.7 198 4-321 11-260 (265)
13 3hv1_A Polar amino acid ABC up 99.8 1.7E-19 5.9E-24 165.9 12.7 194 3-321 29-250 (268)
14 4f3p_A Glutamine-binding perip 99.8 3.5E-19 1.2E-23 162.1 14.4 195 3-322 32-245 (249)
15 1mqi_A Glutamate receptor 2; G 99.8 2.8E-19 9.5E-24 164.0 13.7 198 3-321 11-258 (263)
16 3kbr_A Cyclohexadienyl dehydra 99.8 1.6E-19 5.5E-24 162.7 10.9 195 3-320 23-238 (239)
17 3tql_A Arginine-binding protei 99.8 7.9E-19 2.7E-23 156.1 14.7 192 3-318 10-227 (227)
18 3del_B Arginine binding protei 99.8 4.6E-19 1.6E-23 160.0 13.0 194 2-322 18-235 (242)
19 1ii5_A SLR1257 protein; membra 99.8 2.2E-18 7.5E-23 154.0 15.2 197 4-321 12-228 (233)
20 1lst_A Lysine, arginine, ornit 99.8 1.8E-18 6.3E-23 155.5 13.2 196 2-321 11-234 (239)
21 3h7m_A Sensor protein; histidi 99.8 1.9E-18 6.5E-23 154.5 13.0 195 3-323 19-234 (234)
22 1wdn_A GLNBP, glutamine bindin 99.8 3.2E-18 1.1E-22 152.0 14.1 194 3-322 11-225 (226)
23 2y7i_A STM4351; arginine-bindi 99.8 6.5E-18 2.2E-22 150.7 15.3 191 3-320 14-229 (229)
24 4eq9_A ABC transporter substra 99.8 6E-18 2.1E-22 152.6 13.6 193 3-321 16-237 (246)
25 2iee_A ORF2, probable ABC tran 99.8 3.3E-18 1.1E-22 158.1 11.4 197 3-319 29-246 (271)
26 4dz1_A DALS D-alanine transpor 99.7 6.7E-18 2.3E-22 154.9 11.8 196 3-322 37-256 (259)
27 3mpk_A Virulence sensor protei 99.7 1.1E-17 3.7E-22 154.3 12.3 192 3-320 40-253 (267)
28 3qax_A Probable ABC transporte 99.7 2.6E-17 8.9E-22 150.3 13.3 199 3-328 39-262 (268)
29 4i62_A Amino acid ABC transpor 99.7 3.2E-17 1.1E-21 149.8 12.4 197 3-321 47-266 (269)
30 2yln_A Putative ABC transporte 99.7 5.3E-17 1.8E-21 151.3 13.0 194 3-321 65-279 (283)
31 2vha_A Periplasmic binding tra 99.7 6.6E-17 2.3E-21 150.2 13.4 196 3-323 25-252 (287)
32 2pyy_A Ionotropic glutamate re 99.7 4.2E-17 1.4E-21 144.9 11.3 196 4-321 11-224 (228)
33 1xt8_A Putative amino-acid tra 99.7 5.8E-17 2E-21 151.2 11.9 193 3-321 52-267 (292)
34 2pvu_A ARTJ; basic amino acid 99.7 2.4E-16 8.2E-21 145.4 15.2 195 3-323 50-266 (272)
35 2yjp_A Putative ABC transporte 99.7 1.3E-16 4.5E-21 149.1 13.3 192 3-320 63-277 (291)
36 2q88_A EHUB, putative ABC tran 99.7 1.1E-16 3.8E-21 145.8 11.3 193 4-318 21-239 (257)
37 2v25_A Major cell-binding fact 99.5 2.3E-14 7.8E-19 129.8 10.0 187 3-318 46-258 (259)
38 2ozz_A Hypothetical protein YH 98.5 2.8E-07 9.4E-12 83.1 8.6 73 20-99 28-108 (231)
39 3p7i_A PHND, subunit of alkylp 97.3 0.00073 2.5E-08 63.7 9.1 75 243-317 164-250 (321)
40 2k1e_A Water soluble analogue 97.2 0.00035 1.2E-08 54.7 4.8 77 121-218 18-95 (103)
41 3n5l_A Binding protein compone 97.1 0.00065 2.2E-08 63.7 6.9 75 243-317 155-241 (310)
42 2ih3_C Voltage-gated potassium 97.1 0.00074 2.5E-08 54.5 6.2 75 123-218 41-116 (122)
43 3eff_K Voltage-gated potassium 97.0 0.0022 7.6E-08 52.8 8.0 75 123-218 20-95 (139)
44 2a9h_A Voltage-gated potassium 96.9 0.0017 5.8E-08 54.7 6.5 79 122-221 63-142 (155)
45 4h33_A LMO2059 protein; bilaye 96.4 0.0077 2.6E-07 49.5 7.1 57 147-220 43-100 (137)
46 2x26_A Periplasmic aliphatic s 96.3 0.058 2E-06 49.4 13.2 63 32-99 24-95 (308)
47 3ldc_A Calcium-gated potassium 95.6 0.021 7.2E-07 42.4 5.8 65 123-215 15-80 (82)
48 3pjs_K KCSA, voltage-gated pot 95.2 0.0019 6.5E-08 55.0 -1.6 57 145-218 65-122 (166)
49 3ouf_A Potassium channel prote 95.0 0.031 1.1E-06 42.9 5.2 57 147-220 32-89 (97)
50 2q67_A Potassium channel prote 94.9 0.042 1.4E-06 43.5 5.8 56 147-219 49-105 (114)
51 3vou_A ION transport 2 domain 94.8 0.058 2E-06 44.7 6.7 55 147-218 52-107 (148)
52 1orq_C Potassium channel; volt 94.8 0.05 1.7E-06 48.0 6.7 73 124-217 146-219 (223)
53 1p7b_A Integral membrane chann 94.4 0.089 3E-06 49.7 7.5 59 145-220 94-153 (333)
54 3un6_A Hypothetical protein sa 94.0 0.23 8E-06 46.3 9.7 78 244-321 190-285 (341)
55 3uif_A Sulfonate ABC transport 93.7 0.34 1.2E-05 45.3 10.2 46 49-99 60-109 (348)
56 3ksx_A Nitrate transport prote 93.7 1.6 5.4E-05 40.1 14.7 58 37-99 57-121 (324)
57 1xl4_A Inward rectifier potass 93.5 0.14 4.8E-06 47.6 6.9 58 145-219 80-138 (301)
58 3ix1_A N-formyl-4-amino-5-amin 93.3 0.055 1.9E-06 49.5 3.8 74 21-99 16-96 (302)
59 3qsl_A Putative exported prote 92.8 1.6 5.6E-05 39.9 13.4 61 34-99 59-126 (346)
60 2qks_A KIR3.1-prokaryotic KIR 92.5 0.2 7E-06 46.9 6.5 57 147-220 78-135 (321)
61 3beh_A MLL3241 protein; transm 92.4 0.088 3E-06 49.8 4.0 74 123-217 141-215 (355)
62 2r9r_B Paddle chimera voltage 87.2 0.92 3.2E-05 45.3 6.6 54 146-216 374-428 (514)
63 1lnq_A MTHK channels, potassiu 86.5 0.082 2.8E-06 49.6 -1.5 57 147-220 45-102 (336)
64 4gx0_A TRKA domain protein; me 82.9 0.98 3.3E-05 45.4 4.5 48 147-211 51-99 (565)
65 4ddd_A Immunogenic protein; ss 82.5 2 6.9E-05 39.9 6.2 76 20-100 43-137 (327)
66 3ukm_A Potassium channel subfa 81.9 1.3 4.5E-05 40.5 4.5 57 147-220 201-265 (280)
67 2f5x_A BUGD; periplasmic bindi 80.4 13 0.00043 34.3 10.9 77 241-317 170-275 (312)
68 3um7_A Potassium channel subfa 79.2 1.1 3.6E-05 41.7 3.0 52 148-216 116-168 (309)
69 1zbm_A Hypothetical protein AF 76.7 8.2 0.00028 34.2 8.2 30 49-83 50-79 (280)
70 2dvz_A BUGE, putative exported 76.3 12 0.0004 34.6 9.3 77 241-317 174-279 (314)
71 3um7_A Potassium channel subfa 68.2 4.3 0.00015 37.6 4.2 54 147-217 224-284 (309)
72 3sya_A G protein-activated inw 64.4 18 0.00062 33.9 7.7 60 146-222 90-152 (340)
73 3ukm_A Potassium channel subfa 64.3 4 0.00014 37.3 3.1 53 147-216 93-146 (280)
74 2y7p_A LYSR-type regulatory pr 49.4 22 0.00076 29.7 5.2 64 27-100 24-91 (218)
75 3oxn_A Putative transcriptiona 47.3 35 0.0012 28.6 6.2 64 26-99 34-101 (241)
76 3spc_A Inward-rectifier K+ cha 45.7 52 0.0018 30.8 7.4 60 146-222 93-155 (343)
77 4ab5_A Transcriptional regulat 44.1 30 0.001 28.4 5.1 65 25-99 22-90 (222)
78 1twy_A ABC transporter, peripl 40.6 31 0.0011 29.8 4.9 66 28-99 44-113 (290)
79 3ho7_A OXYR; beta-alpha-barrel 38.0 41 0.0014 27.7 5.1 65 25-99 25-93 (232)
80 3jv9_A OXYR, transcriptional r 35.8 37 0.0013 27.6 4.4 66 25-99 18-86 (219)
81 3hhf_B Transcriptional regulat 34.7 47 0.0016 26.8 4.9 62 27-98 23-85 (213)
82 1atg_A MODA, periplasmic molyb 34.0 28 0.00096 28.8 3.4 68 28-100 16-91 (231)
83 4ecf_A ABC-type phosphate tran 33.9 55 0.0019 28.8 5.5 68 25-99 17-91 (264)
84 1i6a_A OXYR, hydrogen peroxide 33.8 59 0.002 26.7 5.4 65 25-99 19-87 (219)
85 2ql3_A Probable transcriptiona 32.8 69 0.0024 25.9 5.6 65 25-99 19-87 (209)
86 3lr1_A Tungstate ABC transport 32.4 34 0.0012 30.1 3.7 71 24-100 19-95 (236)
87 2czl_A Hypothetical protein TT 30.0 1.8E+02 0.0061 25.0 8.2 36 224-259 96-140 (272)
88 2qpq_A Protein BUG27; alpha/be 29.1 71 0.0024 28.9 5.4 77 241-317 161-266 (301)
89 2hxr_A HTH-type transcriptiona 27.1 68 0.0023 26.6 4.7 64 27-99 46-112 (238)
90 3muq_A Uncharacterized conserv 25.4 74 0.0025 27.9 4.6 72 24-100 19-95 (237)
91 3onm_A Transcriptional regulat 24.8 63 0.0022 27.0 4.0 62 27-99 43-107 (238)
92 2g29_A Nitrate transport prote 24.5 4.3E+02 0.015 24.5 11.2 62 33-99 56-134 (417)
93 3fzv_A Probable transcriptiona 23.5 1.3E+02 0.0043 26.1 6.0 63 27-99 111-178 (306)
94 2fyi_A HTH-type transcriptiona 22.7 1.3E+02 0.0043 24.8 5.6 64 27-99 30-97 (228)
95 2h9b_A HTH-type transcriptiona 22.7 1.1E+02 0.0038 26.8 5.4 64 26-99 105-172 (312)
96 4exl_A PBP 1, phosphate-bindin 22.5 1.2E+02 0.004 26.7 5.5 65 28-99 20-91 (265)
97 3rvy_A ION transport protein; 21.6 58 0.002 29.0 3.2 60 146-218 179-241 (285)
98 1uth_A LYSR-type regulatory pr 21.0 1.4E+02 0.0049 26.2 5.8 42 49-99 146-187 (315)
99 4gd5_A Phosphate ABC transport 21.0 73 0.0025 28.0 3.8 68 28-100 49-123 (279)
100 3ir1_A Outer membrane lipoprot 21.0 1.8E+02 0.0062 25.6 6.2 68 241-311 35-126 (245)
101 2esn_A Probable transcriptiona 20.6 1.2E+02 0.0041 26.4 5.2 62 28-99 118-186 (310)
102 1ixc_A CBNR, LYSR-type regulat 20.1 1.2E+02 0.0041 26.1 5.0 65 25-99 105-173 (294)
103 1pc3_A Phosphate-binding prote 20.1 72 0.0025 29.5 3.6 45 49-99 67-114 (350)
No 1
>3kg2_A Glutamate receptor 2; ION channel, membrane protein, cell membrane, glycoprotein, transport, membrane, postsynaptic cell membrane, editing; HET: ZK1 NAG BMA; 3.60A {Rattus norvegicus}
Probab=100.00 E-value=2.6e-43 Score=375.75 Aligned_cols=327 Identities=18% Similarity=0.281 Sum_probs=253.4
Q ss_pred CCCccceEEeecCC--CCCCceEEeeHHHHHHHHh-cCCceEEEE-e-------------hhhhhhhhccccccCCceeE
Q 040220 3 TSFGKFVKVKFSDN--PYENEYDGFCIELYYESQL-ACKGISILF-F-------------FLQLMMRIRHEENFLRNYDS 65 (370)
Q Consensus 3 ~~~~Pfv~~~~~~~--~~~~~~~G~~idl~~~la~-lg~~~~i~~-~-------------~~~li~~~~~~~L~~g~~Di 65 (370)
...|||++.+.+.+ ++++++.||++||++++++ ||+++++.. . +..++++ |.+|++|+
T Consensus 391 ~~~~P~~~~~~~~~~~~~~~~~~G~~~dl~~~~a~~l~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~-----l~~~~~D~ 465 (823)
T 3kg2_A 391 ILESPYVMMKANHAALAGNERYEGYCVDLAAEIAKHCGFKYKLTIVGDGKYGARDADTKIWNGMVGE-----LVYGKADI 465 (823)
T ss_dssp CCCTTTSEECTTGGGCCGGGGEESHHHHHHHHHHHHHTCCEEEEECSSCCCCCBCTTTCCBCHHHHH-----HHTTSCSE
T ss_pred ecCCCcEEEecCccccCCCCceEEEHHHHHHHHHHHcCCcEEEEEccCCcccccCCCCCchhhHHHh-----hccccCcE
Confidence 35799999832211 2346899999999999999 998887543 2 4448888 99999999
Q ss_pred EEecccccccccceeeecccccccceEEEEeCCCC--cCcceecccCchHHHHHHHHHHHHHHHHHHhccccCCCCCCCC
Q 040220 66 VVGDATILADRAKIVEFTQPCAESRLSMIVPAKTE--ESAWRFMKPCTWEMWVVTDAILVNTRFVVWFPEHQRNSEFNGP 143 (370)
Q Consensus 66 ai~~~tit~eR~~~vdFS~P~~~~~~~ilv~~~~~--~~~~~~l~PF~~~vW~~il~~~~~~~~~~~~~~r~~~~~~~~~ 143 (370)
+++++++|++|.+.+|||.||+.++.++++|++.. .+++.|++||++++|++++++++++++++|+++|..+.++..+
T Consensus 466 ~~~~~~~t~~R~~~~dfs~py~~~~~~~~v~~~~~~~~~~~~fl~Pf~~~vW~~i~~~~~~~~~~l~~~~~~~p~~w~~~ 545 (823)
T 3kg2_A 466 AIAPLTITLVREEVIDFSKPFMSLGISIMIKKPQKSKPGVFSFLDPLAYEIWMCIVFAYIGVSVVLFLVSRFSPYEWHTE 545 (823)
T ss_dssp ECSCCBCCHHHHTTEEECSCSEEECEEEEEECCCCCCCCGGGTTTTSCHHHHHHHHHHHHHHHTTGGGTC----------
T ss_pred EecceecchhheeeEEeccchhhCCEEEEEECCCcccccchHhhcCCchhHHHHHHHHHHHHHHHHHHHHhcChhhccCc
Confidence 99999999999999999999999999999999863 5688999999999999999999999999999999765433211
Q ss_pred C--------------CCCccchHHHHHHHhHhccCccceeeeeeccccCccccCcccchhhHHHHHHHHHHHHHHHHHhh
Q 040220 144 R--------------KDQIGTALWFNFSSILFAYGKEHVLHFIIMVNWKPIFGGRIDSNLTRLVVVVWLFVVLILTSSYT 209 (370)
Q Consensus 144 ~--------------~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~l~~~w~~~~lil~~~Yt 209 (370)
. ..++.+++|++++++++|+. ...|++.++|+++++||+++++++++|+
T Consensus 546 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~-----------------~~~p~~~~~R~~~~~w~~~~lil~~~Yt 608 (823)
T 3kg2_A 546 EFEDGRETQSSESTNEFGIFNSLWFSLGAFMQQGA-----------------DISPRSLSGRIVGGVWWFFTLIIISSYT 608 (823)
T ss_dssp -------------CHHHHHHHHHHHTTTTSCC-----------------------CCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccccccccccccccccHHHHHHHHHHHHHhcCC-----------------CcCCcchhhhhHHHHHHHHHHHHHHHHH
Confidence 1 11266889999999886654 1458999999999999999999999999
Q ss_pred cCCccccccccCCC------------CCeEeeeCChhHHHHHHh---------------------cCChHHHHHHhh--c
Q 040220 210 ASPSPMLTVQPLRP------------NPKVACDRDSFVRNYLQN---------------------FGSDYNYQGEFG--S 254 (370)
Q Consensus 210 a~L~s~Lt~~~~~~------------~~~vg~~~~s~~~~~l~~---------------------~~~~~~~~~~l~--~ 254 (370)
|+|+|+||.+++.+ ..++|+..++...++++. +.+.++++++++ .
T Consensus 609 a~L~s~Lt~~~~~~~I~s~~dL~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 688 (823)
T 3kg2_A 609 ANLAAFLTVERMVSPIESAEDLSKQTEIAYGTLDSGSTKEFFRRSKIAVFDKMWTYMRSAEPSVFVRTTAEGVARVRKSK 688 (823)
T ss_dssp HHHHHHHHHHHHCCCCCSSHHHHHCCSSEEECBSSSHHHHHHHHCCCHHHHHHHHHHHHCSSCCCBSSHHHHHHHHHTTT
T ss_pred HHHHHHhcccccCCCCCCHHHHhhCCCeeEEEEeCCcHHHHHHhccchHHHHHHHHHHhcCCccccCCHHHHHHHHhccC
Confidence 99999999877655 245787766655555541 247889999996 4
Q ss_pred ccccc---cchhHHHHhhc-ccceEEcCCCCCccceeee---CCcchHHHHHHHHHhhhcCchhHHHHhhcCCC------
Q 040220 255 NHIAG---PPYEKVFVSQY-CRIYAATTPTYGFGGLGFL---SSPIAADFSEAILKLSENKKLKSLEYNEKELE------ 321 (370)
Q Consensus 255 g~~~a---~~~~~~~~~~~-c~~~~~~~~~~~~~~~~~a---~spl~~~in~~i~~l~e~G~~~~l~~~w~~~~------ 321 (370)
|+.++ .+..+|..+++ |+ +.++++.+...+||++ +|||++.+|++|++|+|+|++++|+++|+.+.
T Consensus 689 ~~~A~~~~~~~~~y~~~~~~c~-l~~v~~~~~~~~~~~~~~k~spl~~~~~~~il~l~e~G~~~~~~~~w~~~~~~c~~~ 767 (823)
T 3kg2_A 689 GKYAYLLESTMNEYIEQRKPCD-TMKVGGNLDSKGYGIATPKGSSLGTPVNLAVLKLSEQGLLDKLKNKWWYDKGECGAK 767 (823)
T ss_dssp TSEEEEEEHHHHHHHHTSTTCC-EEEESCCSSCEEECCEEETTCSSHHHHHHHHHHHHHTTHHHHHHHHHHTTSCSCSST
T ss_pred CceEEEechHHHHHHHhcCCCc-eEEccccccccceeEeecCCChHHHHHHHHHHHHHhCCcHHHHHHhhCcCCCCCCCC
Confidence 55444 34556666655 88 8888999888888888 99999999999999999999999999998432
Q ss_pred --------CCcceeccchhHHhHhhhhh--------eeeeecCCCCC
Q 040220 322 --------PPGELYRLLGLLMYMSGALS--------RWEYVDPSNAS 352 (370)
Q Consensus 322 --------~~l~l~~l~G~f~~l~~g~~--------~~~~~~~~~~~ 352 (370)
.+|+++++.|+|++|++|++ |++|...+.++
T Consensus 768 ~~~~~~~~~~L~l~~l~g~f~il~~g~~la~~vf~~E~~~~~~~~~~ 814 (823)
T 3kg2_A 768 DSGSKEKTSALSLSNVAGVFYILVGGLGLAMLVALIEFCYKSRAEAK 814 (823)
T ss_dssp TTSTTTCCCSCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHC------
T ss_pred CccccccCCccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHcchhhh
Confidence 25899999999999988864 66665544444
No 2
>1yae_A Glutamate receptor, ionotropic kainate 2; kainate receptor, membrane protein; HET: NAG FUC DOQ; 3.11A {Rattus norvegicus} SCOP: c.94.1.1
Probab=99.88 E-value=1.1e-22 Score=192.60 Aligned_cols=219 Identities=16% Similarity=0.172 Sum_probs=149.5
Q ss_pred CCccceEEeecCCC----CCCceEEeeHHHHHHHHh-cCCceEEEE--------------ehhhhhhhhccccccCCcee
Q 040220 4 SFGKFVKVKFSDNP----YENEYDGFCIELYYESQL-ACKGISILF--------------FFLQLMMRIRHEENFLRNYD 64 (370)
Q Consensus 4 ~~~Pfv~~~~~~~~----~~~~~~G~~idl~~~la~-lg~~~~i~~--------------~~~~li~~~~~~~L~~g~~D 64 (370)
.+|||++. +... .++++.||++||++++++ +|+++++.. .+..++++ |.+|++|
T Consensus 21 ~~~P~~~~--~~~~~~~~~~g~~~G~~vdl~~~ia~~lg~~~~~~~~~~~~~g~~~~~~~~~~~~~~~-----l~~g~~D 93 (312)
T 1yae_A 21 LEEPYVLF--KKSDKPLYGNDRFEGYCIDLLRELSTILGFTYEIRLVEDGKYGAQDDVNGQWNGMVRE-----LIDHKAD 93 (312)
T ss_dssp CBTTTBEE--CCCSSCCCGGGGEESHHHHHHHHHHHHHCCEEEEEECSSCCCCCBCTTTCCBCSHHHH-----HHTTSCS
T ss_pred ccCCeeEE--eccccccCCCceEEEEEHHHHHHHHHHcCCeEEEEecCCCccceeccCCCcchHHHHH-----HhCCCcC
Confidence 35999998 5210 235899999999999999 988877542 23448888 9999999
Q ss_pred EEEecccccccccceeeecccccccceEEEEeCCC--CcCcceecccCchHHHHHHHHHHHHHHHHHHhccccCCCCCCC
Q 040220 65 SVVGDATILADRAKIVEFTQPCAESRLSMIVPAKT--EESAWRFMKPCTWEMWVVTDAILVNTRFVVWFPEHQRNSEFNG 142 (370)
Q Consensus 65 iai~~~tit~eR~~~vdFS~P~~~~~~~ilv~~~~--~~~~~~~l~PF~~~vW~~il~~~~~~~~~~~~~~r~~~~~~~~ 142 (370)
++++++++|++|++.++||.||+.++.++++++++ ..++|.|++||+..-+ .
T Consensus 94 ~~~~~~~~t~eR~~~~~fs~py~~~~~~~~~~~~~~~~~~~~~~~~pf~~~p~-----------------------t--- 147 (312)
T 1yae_A 94 LAVAPLAITYVREKVIDFSKPFMTLGISILYRKPNGTNPGVFSFLNGGSLVPR-----------------------G--- 147 (312)
T ss_dssp EECSSCBCCHHHHHHEEEEEEEEEECEEEEEEC-----------------------------------------------
T ss_pred EEeecceechhhcceEEecceeeecceEEEEeCCccccccceeeecccccCCc-----------------------c---
Confidence 99999999999999999999999999999999875 3568999999981100 0
Q ss_pred CCCCCccchHHHHHHHhHhccCccceeeeeeccccCccccCcccchhhHHHHHHHHHHHHHHHHHhhcCCccccccccCC
Q 040220 143 PRKDQIGTALWFNFSSILFAYGKEHVLHFIIMVNWKPIFGGRIDSNLTRLVVVVWLFVVLILTSSYTASPSPMLTVQPLR 222 (370)
Q Consensus 143 ~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~l~~~w~~~~lil~~~Yta~L~s~Lt~~~~~ 222 (370)
+.... ..++ +++.+.
T Consensus 148 -----------------v~~~~------------------~~i~------------------------------~~~dL~ 162 (312)
T 1yae_A 148 -----------------SERME------------------SPID------------------------------SADDLA 162 (312)
T ss_dssp ------------------------------------------CC------------------------------SHHHHH
T ss_pred -----------------ccccc------------------CCCC------------------------------CHHHHh
Confidence 00000 0000 011111
Q ss_pred CCC---eEeeeCChhHHHHH---------------------HhcCChHHHHHHhhccccccc----chhHHHHhhcccce
Q 040220 223 PNP---KVACDRDSFVRNYL---------------------QNFGSDYNYQGEFGSNHIAGP----PYEKVFVSQYCRIY 274 (370)
Q Consensus 223 ~~~---~vg~~~~s~~~~~l---------------------~~~~~~~~~~~~l~~g~~~a~----~~~~~~~~~~c~~~ 274 (370)
+. ++|+..++...+++ ..+.+.++++++|.+|+ |+. +...|++++.|+ +
T Consensus 163 -g~~~~~vg~v~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~G~-Da~i~~~~~~~~~~~~~~~-l 239 (312)
T 1yae_A 163 -KQTKIEYGAVEDGATMTFFKKSKISTYDKMWAFMSSRRQSVLVKSNEEGIQRVLTSD-YAFLMESTTIEFVTQRNCN-L 239 (312)
T ss_dssp -TCSSSEEECBTTSHHHHHHHHCCBHHHHHHHHHHHHTHHHHCBSSHHHHHHHHHHSS-EEEEEEHHHHHHHHTTCTT-E
T ss_pred -hccCceEEEEeCChHHHHHHhccCchHHHHHHHHHhcCCCcccCCHHHHHHHHHcCC-cEEEeccHHHHHHHhcCCC-E
Confidence 32 67765433222222 23678899999999999 983 345566777787 8
Q ss_pred EEcCCCCCccceeee---CCcchHHHHHHHHHhhhcCchhHHHHhhcCCC-CC
Q 040220 275 AATTPTYGFGGLGFL---SSPIAADFSEAILKLSENKKLKSLEYNEKELE-PP 323 (370)
Q Consensus 275 ~~~~~~~~~~~~~~a---~spl~~~in~~i~~l~e~G~~~~l~~~w~~~~-~~ 323 (370)
.+++..+...+++++ ++|+++.||++|.+|.++|.+++|.+||++.. |+
T Consensus 240 ~~~~~~~~~~~~~~a~~k~~~l~~~in~~l~~l~~~G~~~~i~~kw~~~~~c~ 292 (312)
T 1yae_A 240 TQIGGLIDSKGYGVGTPMGSPYRDKITIAILQLQEEGKLHMMKEKWWRGNGCP 292 (312)
T ss_dssp EEESSCSSCEEEEEEEETTCSSHHHHHHHHHHHHHHTHHHHHHHHHHCCSCC-
T ss_pred EEecccccccceEEEEeCCCCcHHHHHHHHHHHHHcCCHHHHHhhhcCCCCCC
Confidence 888877777788887 78999999999999999999999999999774 44
No 3
>1pb7_A N-methyl-D-aspartate receptor subunit 1; ligand binding receptor, NR1, ligand binding protein; 1.35A {Rattus norvegicus} SCOP: c.94.1.1 PDB: 1pbq_A* 1y1m_A 1y1z_A 1y20_A 2a5t_A* 1pb8_A 1pb9_A
Probab=99.87 E-value=1.8e-22 Score=189.87 Aligned_cols=186 Identities=22% Similarity=0.215 Sum_probs=141.3
Q ss_pred ceEEeeHHHHHHHHh-cCCceEEEE------------------ehhhhhhhhccccccCCceeEEEecccccccccceee
Q 040220 21 EYDGFCIELYYESQL-ACKGISILF------------------FFLQLMMRIRHEENFLRNYDSVVGDATILADRAKIVE 81 (370)
Q Consensus 21 ~~~G~~idl~~~la~-lg~~~~i~~------------------~~~~li~~~~~~~L~~g~~Diai~~~tit~eR~~~vd 81 (370)
++.||++||+++|++ +|+++++.. .|..++++ |.+|++|++++++++|++|++.++
T Consensus 62 ~~~G~~vDll~~ia~~lg~~~~~~~~~d~~~g~~~~~~~~~~~~w~~~~~~-----l~~g~~D~~~~~~~~t~~R~~~~~ 136 (292)
T 1pb7_A 62 CCYGFCIDLLIKLARTMNFTYEVHLVADGKFGTQERVNNSNKKEWNGMMGE-----LLSGQADMIVAPLTINNERAQYIE 136 (292)
T ss_dssp EEESHHHHHHHHHHHHHTCCEEEEECTTCCCCCEEECTTSSCEEECHHHHH-----HHHTSCSEECSSCBCCHHHHTTEE
T ss_pred CcceeHHHHHHHHHHHcCceEEEEEecCCcccccccccccccCcHHHHHHH-----HHcCCcCEEEeeeEecHHHhcceE
Confidence 479999999999999 999988543 45668888 999999999999999999999999
Q ss_pred ecccccccceEEEEeCCCCcCcceecccCchHHHHHHHHHHHHHHHHHHhccccCCCCCCCCCCCCccchHHHHHHHhHh
Q 040220 82 FTQPCAESRLSMIVPAKTEESAWRFMKPCTWEMWVVTDAILVNTRFVVWFPEHQRNSEFNGPRKDQIGTALWFNFSSILF 161 (370)
Q Consensus 82 FS~P~~~~~~~ilv~~~~~~~~~~~l~PF~~~vW~~il~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~w~~~~~~~~ 161 (370)
||.||+.++.++++++++..+.+.-+ .
T Consensus 137 fs~Py~~~~~~i~~~~~~~i~~~~dl-----------------------------------------------------~ 163 (292)
T 1pb7_A 137 FSKPFKYQGLTILVKKGTRITGINDP-----------------------------------------------------R 163 (292)
T ss_dssp ECSCSEEEEEEEEEETTCCCCSTTCH-----------------------------------------------------H
T ss_pred echhhHhcCeEEEEECCcCCCCCcCc-----------------------------------------------------c
Confidence 99999999999999987531110000 0
Q ss_pred ccCccceeeeeeccccCccccCcccchhhHHHHHHHHHHHHHHHHHhhcCCccccccccCCCCCeEeeeCChhHHHHH--
Q 040220 162 AYGKEHVLHFIIMVNWKPIFGGRIDSNLTRLVVVVWLFVVLILTSSYTASPSPMLTVQPLRPNPKVACDRDSFVRNYL-- 239 (370)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~l~~~w~~~~lil~~~Yta~L~s~Lt~~~~~~~~~vg~~~~s~~~~~l-- 239 (370)
..+ .. . ...+|+..++....++
T Consensus 164 ~~g------------------~~--~------------------------------------~~~~~~~~~~~~~~~~~~ 187 (292)
T 1pb7_A 164 LRN------------------PS--D------------------------------------KFIYATVKQSSVDIYFRR 187 (292)
T ss_dssp HHS------------------CB--T------------------------------------TBCEECBTTSHHHHHHHT
T ss_pred ccC------------------cc--c------------------------------------ceEEEEEcCchHHHHhhh
Confidence 000 00 0 0011222222221111
Q ss_pred -------------HhcCChHHHHHHhhcccccc----cchhHHHHhhcccceEEcCCCCCccceeee---CCcchHHHHH
Q 040220 240 -------------QNFGSDYNYQGEFGSNHIAG----PPYEKVFVSQYCRIYAATTPTYGFGGLGFL---SSPIAADFSE 299 (370)
Q Consensus 240 -------------~~~~~~~~~~~~l~~g~~~a----~~~~~~~~~~~c~~~~~~~~~~~~~~~~~a---~spl~~~in~ 299 (370)
..+.+.++++++|.+|++|+ .+...|.++++|+ +.+++..+...+|+++ ++|+++.+|+
T Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~G~vDa~i~d~~~~~~~~~~~~~-l~~~~~~~~~~~~~ia~~k~~~l~~~in~ 266 (292)
T 1pb7_A 188 QVELSTMYRHMEKHNYESAAEAIQAVRDNKLHAFIWDSAVLEFEASQKCD-LVTTGELFFRSGFGIGMRKDSPWKQNVSL 266 (292)
T ss_dssp CGGGHHHHHHHTTTCBSSHHHHHHHHHTTSCSEEEEEHHHHHHHHHHCTT-EEECSSCSEEEEECCEEETTCSSHHHHHH
T ss_pred cccHHHHHHHHHhhcCCCHHHHHHHHHcCCceEEEEcHHHHHHHHhcCCC-EEEcCccccCCceEEEEeCCCHHHHHHHH
Confidence 15788999999999999999 3445677778887 8888888877788887 8899999999
Q ss_pred HHHHhhhcCchhHHHHhhcCCC
Q 040220 300 AILKLSENKKLKSLEYNEKELE 321 (370)
Q Consensus 300 ~i~~l~e~G~~~~l~~~w~~~~ 321 (370)
+|.+|+++|.+++|.+||++..
T Consensus 267 al~~l~~~G~~~~l~~kw~~~~ 288 (292)
T 1pb7_A 267 SILKSHENGFMEDLDKTWVRYQ 288 (292)
T ss_dssp HHHHHHHSSHHHHHHHHHTSSS
T ss_pred HHHHHHhCCCHHHHHHhhCCCC
Confidence 9999999999999999999764
No 4
>4h5g_A Amino acid ABC superfamily ATP binding cassette transporter, binding protein; center for structural genomics of infectious diseases (csgid national institute of allergy and infectious diseases; HET: ARG; 1.78A {Streptococcus pneumoniae} PDB: 4h5f_A*
Probab=99.87 E-value=2.2e-22 Score=183.55 Aligned_cols=200 Identities=14% Similarity=0.150 Sum_probs=152.3
Q ss_pred CCCCccceEEeecCCCCCCceEEeeHHHHHHHHh-cCCceEE-EEehhhhhhhhccccccCCceeEEEecccccccccce
Q 040220 2 GTSFGKFVKVKFSDNPYENEYDGFCIELYYESQL-ACKGISI-LFFFLQLMMRIRHEENFLRNYDSVVGDATILADRAKI 79 (370)
Q Consensus 2 ~~~~~Pfv~~~~~~~~~~~~~~G~~idl~~~la~-lg~~~~i-~~~~~~li~~~~~~~L~~g~~Diai~~~tit~eR~~~ 79 (370)
.++||||.+. +..+++++++||++||++++++ +|+++++ .+.+..++.+ |.+|++|++++++++|++|++.
T Consensus 19 ~~~~pP~~~~--~~~d~~g~~~G~~vdl~~~ia~~lg~~~~~~~~~~~~~~~~-----l~~g~~d~~~~~~~~t~eR~~~ 91 (243)
T 4h5g_A 19 SPDYAPFEFQ--SLVDGKNQVVGADIDMAQAIADELGVKLEILSMSFDNVLTS-----LQTGKADLAVAGISATDERKEV 91 (243)
T ss_dssp CCCBTTTBEE--EEETTEEEEESHHHHHHHHHHHHHTSEEEEEECCGGGHHHH-----HHTTSCSEECSSCBCCHHHHTT
T ss_pred CCCCCCcEee--eccCCCCcEEEeHHHHHHHHHHHhCCceEEecccHHHHHHH-----HHcCCCCcccccccCChhHccE
Confidence 4689999997 4323335899999999999999 9988773 3456668888 9999999999999999999999
Q ss_pred eeecccccccceEEEEeCCCCcCcceecccCchHHHHHHHHHHHHHHHHHHhccccCCCCCCCCCCCCccchHHHHHHHh
Q 040220 80 VEFTQPCAESRLSMIVPAKTEESAWRFMKPCTWEMWVVTDAILVNTRFVVWFPEHQRNSEFNGPRKDQIGTALWFNFSSI 159 (370)
Q Consensus 80 vdFS~P~~~~~~~ilv~~~~~~~~~~~l~PF~~~vW~~il~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~w~~~~~~ 159 (370)
++||.||+..+.++++++++....
T Consensus 92 ~~fs~py~~~~~~~~v~~~~~~~~-------------------------------------------------------- 115 (243)
T 4h5g_A 92 FDFSIPYYENKISFLVHKADVEKY-------------------------------------------------------- 115 (243)
T ss_dssp EEECSCSBCCCEEEEEEGGGTTTC--------------------------------------------------------
T ss_pred EEccCccccCcccccccccccccc--------------------------------------------------------
Confidence 999999999999999987652110
Q ss_pred HhccCccceeeeeeccccCccccCcccchhhHHHHHHHHHHHHHHHHHhhcCCccccccccCCCCCeEeeeCChhHHHHH
Q 040220 160 LFAYGKEHVLHFIIMVNWKPIFGGRIDSNLTRLVVVVWLFVVLILTSSYTASPSPMLTVQPLRPNPKVACDRDSFVRNYL 239 (370)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~l~~~w~~~~lil~~~Yta~L~s~Lt~~~~~~~~~vg~~~~s~~~~~l 239 (370)
++ ...+. +.++|+..|+...+++
T Consensus 116 --------------------------~~------------------------------~~dl~-g~~i~v~~g~~~~~~l 138 (243)
T 4h5g_A 116 --------------------------KD------------------------------LTSLE-SANIAAQKGTVPESMV 138 (243)
T ss_dssp --------------------------CS------------------------------HHHHH-TSEEEEETTSHHHHHH
T ss_pred --------------------------cc------------------------------cccCC-CCEEEecCCcHHHHHH
Confidence 00 11111 7789999988777766
Q ss_pred H---------hcCChHHHHHHhhccccccc----chhHHHHhhccc-ceE-EcCCCCCccceeee---CC-cchHHHHHH
Q 040220 240 Q---------NFGSDYNYQGEFGSNHIAGP----PYEKVFVSQYCR-IYA-ATTPTYGFGGLGFL---SS-PIAADFSEA 300 (370)
Q Consensus 240 ~---------~~~~~~~~~~~l~~g~~~a~----~~~~~~~~~~c~-~~~-~~~~~~~~~~~~~a---~s-pl~~~in~~ 300 (370)
. .+.+..+++++|.+|++|+. +...+++.++.+ ... +..+.....+++++ ++ .|++.+|++
T Consensus 139 ~~~~~~~~i~~~~~~~~~~~~l~~GrvD~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~k~~~~L~~~~n~a 218 (243)
T 4h5g_A 139 KEQLPKAQLTSLTNMGEAVNELQAGKIDAVHMDEPVALSYAAKNAGLAVATVSLKMKDGDANAVALRKNSDDLKEVVDKV 218 (243)
T ss_dssp HHHCTTSEEEEESCHHHHHHHHHHTSCSEEEEEHHHHHHHHHHCTTEEECSCCCCCCSSCCBCCEEESSCHHHHHHHHHH
T ss_pred HHhcccceeEEeCCHHHHHHHHHcCCccEEEecHHHHHHHHHHCCCCceeeccCCcccCceEEEEEeCCCHHHHHHHHHH
Confidence 5 57889999999999999983 233445555543 122 22333444566666 55 599999999
Q ss_pred HHHhhhcCchhHHHHhhcCCC
Q 040220 301 ILKLSENKKLKSLEYNEKELE 321 (370)
Q Consensus 301 i~~l~e~G~~~~l~~~w~~~~ 321 (370)
|.+|+++|.+++|.+||+.-.
T Consensus 219 L~~l~~dG~~~~i~~Kw~~~~ 239 (243)
T 4h5g_A 219 IQKLKDEGTYQSYLEKAASLT 239 (243)
T ss_dssp HHHHHHHTHHHHHHHHHTTSC
T ss_pred HHHHHHCCHHHHHHHHhcCCC
Confidence 999999999999999998653
No 5
>4gvo_A LMO2349 protein; structural genomics, IDP05245, L-cystine, ABC transporter, periplasmic binding protein, niaid; HET: HIS; 1.45A {Listeria monocytogenes} PDB: 2o1m_A
Probab=99.87 E-value=2.7e-22 Score=182.94 Aligned_cols=197 Identities=13% Similarity=0.094 Sum_probs=146.6
Q ss_pred CCCCccceEEeecCCCCCCceEEeeHHHHHHHHh-c-CCceEE-EEehhhhhhhhccccccCCceeEEEecccccccccc
Q 040220 2 GTSFGKFVKVKFSDNPYENEYDGFCIELYYESQL-A-CKGISI-LFFFLQLMMRIRHEENFLRNYDSVVGDATILADRAK 78 (370)
Q Consensus 2 ~~~~~Pfv~~~~~~~~~~~~~~G~~idl~~~la~-l-g~~~~i-~~~~~~li~~~~~~~L~~g~~Diai~~~tit~eR~~ 78 (370)
.++||||.+. |.++ +++||++||++++++ | |+++++ ...+..++.+ |.+|++|++++++++|++|++
T Consensus 16 ~~~~pP~~~~--d~~G---~~~G~~vdl~~~ia~~l~g~~~~~~~~~~~~~~~~-----l~~g~~D~~~~~~~~t~eR~~ 85 (243)
T 4gvo_A 16 GTQFPNVCFL--DENG---KLTGYDVELVKEIDKRLPGYKFKFKTMDFSNLLVS-----LGAGKVDIVAHQMEKSKEREK 85 (243)
T ss_dssp CSEETTTEEE--CTTS---CEESHHHHHHHHHHHTCTTEEEEEEECCGGGHHHH-----HHTTSCSEECSCCBCCHHHHH
T ss_pred CCCCCCeEEE--CCCC---cEEEhHHHHHHHHHHhccCCeEEEEECCHHHHHHH-----HHCCCCCEecccCCCCHHHhh
Confidence 4679999999 7665 799999999999999 8 766553 2345568888 999999999999999999999
Q ss_pred eeeecccccccceEEEEeCCCCcCcceecccCchHHHHHHHHHHHHHHHHHHhccccCCCCCCCCCCCCccchHHHHHHH
Q 040220 79 IVEFTQPCAESRLSMIVPAKTEESAWRFMKPCTWEMWVVTDAILVNTRFVVWFPEHQRNSEFNGPRKDQIGTALWFNFSS 158 (370)
Q Consensus 79 ~vdFS~P~~~~~~~ilv~~~~~~~~~~~l~PF~~~vW~~il~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~w~~~~~ 158 (370)
.++||.|++......++.+++....
T Consensus 86 ~~~fs~p~~~~~~~~~~~~~~~~~~------------------------------------------------------- 110 (243)
T 4gvo_A 86 KFLFNDVAYNNFPLQLTVLDSNNSI------------------------------------------------------- 110 (243)
T ss_dssp HSEECSSCCEECCEEEEEETTCCSC-------------------------------------------------------
T ss_pred hhhhhhhhcccccceEEEecccccc-------------------------------------------------------
Confidence 9999999887665555443321100
Q ss_pred hHhccCccceeeeeeccccCccccCcccchhhHHHHHHHHHHHHHHHHHhhcCCccccccccCCCCCeEeeeCChhHHHH
Q 040220 159 ILFAYGKEHVLHFIIMVNWKPIFGGRIDSNLTRLVVVVWLFVVLILTSSYTASPSPMLTVQPLRPNPKVACDRDSFVRNY 238 (370)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~l~~~w~~~~lil~~~Yta~L~s~Lt~~~~~~~~~vg~~~~s~~~~~ 238 (370)
+ +...+. +.++|+..|+....+
T Consensus 111 ---------------------------~------------------------------~~~dL~-g~~v~v~~gs~~~~~ 132 (243)
T 4gvo_A 111 ---------------------------N------------------------------STKDLA-GKRVITSATSNGALV 132 (243)
T ss_dssp ---------------------------S------------------------------SGGGGT-TCEEEECTTCHHHHH
T ss_pred ---------------------------C------------------------------chHHhc-CCeEEEecCchHHHH
Confidence 0 122233 778888888755554
Q ss_pred HH--------------hcCChHHHHHHhhcccccccc----hhHHHHhhcccceEEcCCCCCccceeee----CCcchHH
Q 040220 239 LQ--------------NFGSDYNYQGEFGSNHIAGPP----YEKVFVSQYCRIYAATTPTYGFGGLGFL----SSPIAAD 296 (370)
Q Consensus 239 l~--------------~~~~~~~~~~~l~~g~~~a~~----~~~~~~~~~c~~~~~~~~~~~~~~~~~a----~spl~~~ 296 (370)
++ .+.+.++++++|.+|++|+.. ...+..++......++++.+...+++++ +..+++.
T Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~GrvDa~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~l~~~ 212 (243)
T 4gvo_A 133 LKKINEEQGNNFEIAYEGQGSNDTANQLKTGRADATISTPFAVDFQNKTSAIKEKVVGDVLSNAKVYFMLGKDETKLSKK 212 (243)
T ss_dssp HHHHHHHTTSCSEEEECCSGGGSHHHHHHHTSCSBEEECHHHHHHHHHTCSSCEEEEEEEEECCEECCEECTTCHHHHHH
T ss_pred HHHHHHhccccceeccccCChHHHHHHHHcCCccEEEccHHHHHHHHhhCCCceEEeccCCCCCcEEEEEeCCCHHHHHH
Confidence 43 234677899999999999932 3344454444346667666666677766 4459999
Q ss_pred HHHHHHHhhhcCchhHHHHhhcCCC
Q 040220 297 FSEAILKLSENKKLKSLEYNEKELE 321 (370)
Q Consensus 297 in~~i~~l~e~G~~~~l~~~w~~~~ 321 (370)
||++|.+|+++|.+++|.+|||+.+
T Consensus 213 in~~l~~l~~~G~~~~i~~kw~g~d 237 (243)
T 4gvo_A 213 VDEALQSIIDDGTLKKLSEKWLGAD 237 (243)
T ss_dssp HHHHHHHHHHTTHHHHHHHHHHCGG
T ss_pred HHHHHHHHHhCcHHHHHHHHHCCCC
Confidence 9999999999999999999999753
No 6
>3g3k_A Glutamate receptor, ionotropic kainate 2; membrane protein, cell junction, cell membrane, glycoprotein, ION transport, ionic channel, membrane; HET: GLU IPA; 1.24A {Rattus norvegicus} PDB: 3g3j_A* 3g3i_A* 2i0b_A* 3g3h_A* 3g3g_A* 3g3f_A* 1s7y_A* 1s9t_A* 1sd3_A* 1tt1_A* 1s50_A* 2xxr_A* 2xxt_A* 2xxx_A* 2xxw_A* 2xxy_A* 2xxu_A* 2xxv_A* 3qxm_A* 2i0c_A* ...
Probab=99.87 E-value=9.6e-22 Score=180.13 Aligned_cols=198 Identities=15% Similarity=0.158 Sum_probs=151.4
Q ss_pred CCCccceEEeecCCC----CCCceEEeeHHHHHHHHh-cCCceEEEE--------------ehhhhhhhhccccccCCce
Q 040220 3 TSFGKFVKVKFSDNP----YENEYDGFCIELYYESQL-ACKGISILF--------------FFLQLMMRIRHEENFLRNY 63 (370)
Q Consensus 3 ~~~~Pfv~~~~~~~~----~~~~~~G~~idl~~~la~-lg~~~~i~~--------------~~~~li~~~~~~~L~~g~~ 63 (370)
.++|||.+. +.++ +++++.||++||++++++ +|+++++.. .|..++.+ |.+|++
T Consensus 11 ~~~~P~~~~--~~~~~~~~~~g~~~G~~vdl~~~ia~~lg~~~~~~~~p~~~~g~~~~~~~~~~~~~~~-----l~~g~~ 83 (259)
T 3g3k_A 11 ILEEPYVLF--KKSDKPLYGNDRFEGYCIDLLRELSTHLGFTYEIRLVEDGKYGAQDDVNGQWNGMVRE-----LIDHKA 83 (259)
T ss_dssp CCBTTTBEE--CCCSSCCCGGGGEESHHHHHHHHHHHHHTCCEEEEECTTCCCCCBCTTTCCBCHHHHH-----HHTTSC
T ss_pred ecCCCeEEE--eecccccCCCceeeeEHHHHHHHHHHHcCCeEEEEECCCCCcCcccCCCCcchHHHHH-----HhcCcc
Confidence 356999999 5431 236899999999999999 998877543 35668888 999999
Q ss_pred eEEEecccccccccceeeecccccccceEEEEeCCCCcCcceecccCchHHHHHHHHHHHHHHHHHHhccccCCCCCCCC
Q 040220 64 DSVVGDATILADRAKIVEFTQPCAESRLSMIVPAKTEESAWRFMKPCTWEMWVVTDAILVNTRFVVWFPEHQRNSEFNGP 143 (370)
Q Consensus 64 Diai~~~tit~eR~~~vdFS~P~~~~~~~ilv~~~~~~~~~~~l~PF~~~vW~~il~~~~~~~~~~~~~~r~~~~~~~~~ 143 (370)
|++++++++|++|++.++||.||+..+.+++++++++.+.+.
T Consensus 84 D~~~~~~~~t~eR~~~~~fs~py~~~~~~~~~~~~~~i~~~~-------------------------------------- 125 (259)
T 3g3k_A 84 DLAVAPLAITYVREEVIDFSKPFMTLGISILYRKGTPIDSAD-------------------------------------- 125 (259)
T ss_dssp SEECSSCBCCHHHHTTEEECSCSEEECEEEEEESSSSCCSHH--------------------------------------
T ss_pred cEEEeeeEecccccceEeeeeeeeeCCEEEEEeCCccccCHH--------------------------------------
Confidence 999999999999999999999999999999999865311000
Q ss_pred CCCCccchHHHHHHHhHhccCccceeeeeeccccCccccCcccchhhHHHHHHHHHHHHHHHHHhhcCCccccccccCCC
Q 040220 144 RKDQIGTALWFNFSSILFAYGKEHVLHFIIMVNWKPIFGGRIDSNLTRLVVVVWLFVVLILTSSYTASPSPMLTVQPLRP 223 (370)
Q Consensus 144 ~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~l~~~w~~~~lil~~~Yta~L~s~Lt~~~~~~ 223 (370)
|+.|.+
T Consensus 126 -----------------------------------dL~g~~--------------------------------------- 131 (259)
T 3g3k_A 126 -----------------------------------DLAKQT--------------------------------------- 131 (259)
T ss_dssp -----------------------------------HHHTCS---------------------------------------
T ss_pred -----------------------------------HhccCC---------------------------------------
Confidence 000000
Q ss_pred CCeEeeeCChhHHHHHH---------------------hcCChHHHHHHhhcccccc----cchhHHHHhhcccceEEcC
Q 040220 224 NPKVACDRDSFVRNYLQ---------------------NFGSDYNYQGEFGSNHIAG----PPYEKVFVSQYCRIYAATT 278 (370)
Q Consensus 224 ~~~vg~~~~s~~~~~l~---------------------~~~~~~~~~~~l~~g~~~a----~~~~~~~~~~~c~~~~~~~ 278 (370)
...+|+..++...+++. .+.+.++++++|.+|+ |+ .+...|+.++.|+ +.+++
T Consensus 132 ~~~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~-da~i~~~~~~~~~~~~~~~-l~~~~ 209 (259)
T 3g3k_A 132 KIEYGAVEDGATMTFFKRSKISTYDKMWAFMSSRRQSVLVKSNEEGIQRVLTSD-YAFLMESTTIEFVTQRNCN-LTQIG 209 (259)
T ss_dssp SSEEEEETTSHHHHHHHHCCSHHHHHHHHHHHHTHHHHEESSHHHHHHHHHHSS-EEEEEEHHHHHHHHHHCTT-EEEES
T ss_pred CceEEEecCcHHHHHHhhccchhHHHHHHHHHhcCCCcccCCHHHHHHHHHhCC-eEEEechHHHHHHhcCCce-EEEec
Confidence 23456554444433322 3578899999999999 77 2445566677777 88888
Q ss_pred CCCCccceeee---CCcchHHHHHHHHHhhhcCchhHHHHhhcCCC
Q 040220 279 PTYGFGGLGFL---SSPIAADFSEAILKLSENKKLKSLEYNEKELE 321 (370)
Q Consensus 279 ~~~~~~~~~~a---~spl~~~in~~i~~l~e~G~~~~l~~~w~~~~ 321 (370)
..+...+++++ ++|+++.||++|.+|+++|.+++|.+|||+..
T Consensus 210 ~~~~~~~~~~a~~k~~~l~~~in~~l~~l~~~G~~~~i~~kw~~~~ 255 (259)
T 3g3k_A 210 GLIDSKGYGVGTPMGSPYRDKITLAILKLQEQGKLHMMKEKWWRGN 255 (259)
T ss_dssp SCSSCEEECCEEETTCTHHHHHHHHHHHHHHTC-CHHHHHHHHCC-
T ss_pred ccceeeeEEEEECCCCccHHHHHHHHHHHHhcChHHHHHHhhcCCC
Confidence 88877788877 78899999999999999999999999999863
No 7
>2a5s_A N-methyl-D-aspartate receptor nmdar2A subunit, NMDA receptor nmdar2A; protein-ligand complex, metal transport,membrane protein; HET: GLU; 1.70A {Rattus norvegicus} SCOP: c.94.1.1 PDB: 2a5t_B* 3oen_A* 3oel_A* 3oem_A* 3oek_A*
Probab=99.85 E-value=2.3e-20 Score=174.54 Aligned_cols=191 Identities=16% Similarity=0.186 Sum_probs=141.3
Q ss_pred ceEEeeHHHHHHHHh-cCCceEEEE------------ehhhhhhhhccccccCCceeEEEecccccccccceeeeccccc
Q 040220 21 EYDGFCIELYYESQL-ACKGISILF------------FFLQLMMRIRHEENFLRNYDSVVGDATILADRAKIVEFTQPCA 87 (370)
Q Consensus 21 ~~~G~~idl~~~la~-lg~~~~i~~------------~~~~li~~~~~~~L~~g~~Diai~~~tit~eR~~~vdFS~P~~ 87 (370)
++.|+++|+++++++ +|+++++.. .+..++++ |.+|++|+++++++++++|.+.++||.||+
T Consensus 56 ~~~G~~~dl~~~i~~~lg~~~~~~~~~~~~~g~~~~~~~~~~~~~-----l~~g~~D~~~~~~~~t~~R~~~~~fs~p~~ 130 (284)
T 2a5s_A 56 CCKGFCIDILKKLSRTVKFTYDLYLVTNGKHGKKVNNVWNGMIGE-----VVYQRAVMAVGSLTINEERSEVVDFSVPFV 130 (284)
T ss_dssp EEESHHHHHHHHHHHHHTCCEEEEECCSSSSCCEETTEECHHHHH-----HHTTSCSEECSSCBCCHHHHTTEEECCCCE
T ss_pred eeeEEhHHHHHHHHHHCCCCEEEEEccCCccCcccCCCHHHHHHH-----HhcCCcCEEEEEEEEeccccceEEeccCch
Confidence 589999999999999 998877432 34458888 999999999999999999999999999999
Q ss_pred ccceEEEEeCCCCcCcceecccCchHHHHHHHHHHHHHHHHHHhccccCCCCCCCCCCCCccchHHHHHHHhHhccCccc
Q 040220 88 ESRLSMIVPAKTEESAWRFMKPCTWEMWVVTDAILVNTRFVVWFPEHQRNSEFNGPRKDQIGTALWFNFSSILFAYGKEH 167 (370)
Q Consensus 88 ~~~~~ilv~~~~~~~~~~~l~PF~~~vW~~il~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~ 167 (370)
.++.+++++++...+.+.
T Consensus 131 ~~~~~~~~~~~~~~~~~~-------------------------------------------------------------- 148 (284)
T 2a5s_A 131 ETGISVMVSRGTQVTGLS-------------------------------------------------------------- 148 (284)
T ss_dssp EECEEEEEETTCCCCSTT--------------------------------------------------------------
T ss_pred hcCEEEEEECCccccccc--------------------------------------------------------------
Confidence 999999999865311000
Q ss_pred eeeeeeccccCccccCcccchhhHHHHHHHHHHHHHHHHHhhcCCccccccccCCCCCeEeeeC-ChhHHHH--------
Q 040220 168 VLHFIIMVNWKPIFGGRIDSNLTRLVVVVWLFVVLILTSSYTASPSPMLTVQPLRPNPKVACDR-DSFVRNY-------- 238 (370)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~R~l~~~w~~~~lil~~~Yta~L~s~Lt~~~~~~~~~vg~~~-~s~~~~~-------- 238 (370)
|+-+. +...+.++.++|+.. ++....+
T Consensus 149 -----------dl~~~---------------------------------~~~~l~~~~~vg~v~~~s~~~~l~~~~~~~~ 184 (284)
T 2a5s_A 149 -----------DKKFQ---------------------------------RPHDYSPPFRFGTVPNGSTERNIRNNYPYMH 184 (284)
T ss_dssp -----------SHHHH---------------------------------SGGGSSSCCCEECCTTSHHHHHHHTTCHHHH
T ss_pred -----------ccccC---------------------------------ChhHcCCCceEEEEeCCchHHHHHHHHHHHH
Confidence 00000 011111245666543 3332222
Q ss_pred --HHhc--CChHHHHHHhhccccccc----chhHHHHhhc--ccceEEcC--CCCCccceeee---CCcchHHHHHHHHH
Q 040220 239 --LQNF--GSDYNYQGEFGSNHIAGP----PYEKVFVSQY--CRIYAATT--PTYGFGGLGFL---SSPIAADFSEAILK 303 (370)
Q Consensus 239 --l~~~--~~~~~~~~~l~~g~~~a~----~~~~~~~~~~--c~~~~~~~--~~~~~~~~~~a---~spl~~~in~~i~~ 303 (370)
+..+ .+.++++++|.+|++|+. +...++++++ |+ +.+++ ..+...+++++ ++++++.+|++|.+
T Consensus 185 ~~i~~~~~~~~~~~l~~l~~G~vDa~i~d~~~~~~~~~~~~~~~-l~~~~~~~~~~~~~~~~a~~k~~~l~~~ln~~l~~ 263 (284)
T 2a5s_A 185 QYMTRFNQRGVEDALVSLKTGKLDAFIYDAAVLNYKAGRDEGCK-LVTIGSGYIFATTGYGIALQKGSPWKRQIDLALLQ 263 (284)
T ss_dssp HHHGGGCCSSHHHHHHHHHTTSCSEEEEEHHHHHHHHHTCTTSC-EEEEECCCGGGCEEECCEEETTCTTHHHHHHHHHH
T ss_pred HHHHhccCCCHHHHHHHHHcCCeeEEEEchHHHHHHHhcCCCCC-EEEeCCccccccCceEEEecCCCHHHHHHHHHHHH
Confidence 1234 688999999999999993 4455666554 66 66663 45666677777 77999999999999
Q ss_pred hhhcCchhHHHHhhcCCCCC
Q 040220 304 LSENKKLKSLEYNEKELEPP 323 (370)
Q Consensus 304 l~e~G~~~~l~~~w~~~~~~ 323 (370)
+.++|.+++|.+||++..|+
T Consensus 264 l~~~g~~~~i~~kw~~~~c~ 283 (284)
T 2a5s_A 264 FVGDGEMEELETLWLTGICH 283 (284)
T ss_dssp HHHHTHHHHHHHHHTCCCCC
T ss_pred HHhCChHHHHHHHhhhccCC
Confidence 99999999999999998764
No 8
>2rc8_A Glutamate [NMDA] receptor subunit 3A; membrane protein, cell junction, glycoprotein, ION transport channel, magnesium; 1.45A {Rattus norvegicus} PDB: 2rc7_A 2rc9_A 2rca_A 2rcb_A
Probab=99.84 E-value=1.2e-20 Score=177.25 Aligned_cols=185 Identities=16% Similarity=0.236 Sum_probs=143.0
Q ss_pred eEEeeHHHHHHHHh-cCCceEEEE------------ehhhhhhhhccccccCCceeEEEecccccccccceeeecccccc
Q 040220 22 YDGFCIELYYESQL-ACKGISILF------------FFLQLMMRIRHEENFLRNYDSVVGDATILADRAKIVEFTQPCAE 88 (370)
Q Consensus 22 ~~G~~idl~~~la~-lg~~~~i~~------------~~~~li~~~~~~~L~~g~~Diai~~~tit~eR~~~vdFS~P~~~ 88 (370)
+.||++||+++|++ +|+++++.. .+..++++ |.+|++|++++++++|++|++.++||.||+.
T Consensus 68 ~~G~~vdll~~ia~~lg~~~~~~~~~~~~~g~~~~~~w~~~~~~-----l~~g~~D~~~~~~~~t~eR~~~~~fs~P~~~ 142 (294)
T 2rc8_A 68 CYGYCIDLLEQLAEDMNFDFDLYIVGDGKYGAWKNGHWTGLVGD-----LLSGTANMAVTSFSINTARSQVIDFTSPFFS 142 (294)
T ss_dssp EESHHHHHHHHHHHHHTEEEEEEECTTCCCCCEETTEECHHHHH-----HHHTSCSEECSSCBCCHHHHTTSEECSCSEE
T ss_pred ceEEhHHHHHHHHHHcCCcEEEEECCCCcccccCCCCHHHHHHH-----HHCCCcCEEEeccccCHhHhceEEEccchHh
Confidence 79999999999999 987766421 23448888 9999999999999999999999999999999
Q ss_pred cceEEEEeCCCC-cCcceecccCchHHHHHHHHHHHHHHHHHHhccccCCCCCCCCCCCCccchHHHHHHHhHhccCccc
Q 040220 89 SRLSMIVPAKTE-ESAWRFMKPCTWEMWVVTDAILVNTRFVVWFPEHQRNSEFNGPRKDQIGTALWFNFSSILFAYGKEH 167 (370)
Q Consensus 89 ~~~~ilv~~~~~-~~~~~~l~PF~~~vW~~il~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~ 167 (370)
.+.++++++++. .+.+
T Consensus 143 ~~~~i~~~~~~~~i~~~--------------------------------------------------------------- 159 (294)
T 2rc8_A 143 TSLGILVRTRGTELSGI--------------------------------------------------------------- 159 (294)
T ss_dssp EEEEEEEETTSCCCCST---------------------------------------------------------------
T ss_pred cceEEEEECCCCCcCCh---------------------------------------------------------------
Confidence 999999998652 1000
Q ss_pred eeeeeeccccCccccCcccchhhHHHHHHHHHHHHHHHHHhhcCCccccccccCCCCCeEeeeCChhHHHHHH-------
Q 040220 168 VLHFIIMVNWKPIFGGRIDSNLTRLVVVVWLFVVLILTSSYTASPSPMLTVQPLRPNPKVACDRDSFVRNYLQ------- 240 (370)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~R~l~~~w~~~~lil~~~Yta~L~s~Lt~~~~~~~~~vg~~~~s~~~~~l~------- 240 (370)
.|+ + . ..... +.++|+..++....+++
T Consensus 160 ----------~dL-----~---~---------------------------~~~~~-g~~vg~~~gs~~~~~l~~~~~~~~ 193 (294)
T 2rc8_A 160 ----------HDP-----K---L---------------------------HHPSQ-GFRFGTVRESSAEDYVRQSFPEMH 193 (294)
T ss_dssp ----------TCH-----H---H---------------------------HSCCT-TCCEECBTTSHHHHHHHHHCHHHH
T ss_pred ----------hhh-----h---h---------------------------cCccc-CeEEEEEcCChHHHHHHHHHHHHH
Confidence 000 0 0 00001 66888888876665543
Q ss_pred ------hcCChHHHHHHhhc--cccccc----chhHHHHhh--cccceEEcCCCCCccceeee---CCcchHHHHHHHHH
Q 040220 241 ------NFGSDYNYQGEFGS--NHIAGP----PYEKVFVSQ--YCRIYAATTPTYGFGGLGFL---SSPIAADFSEAILK 303 (370)
Q Consensus 241 ------~~~~~~~~~~~l~~--g~~~a~----~~~~~~~~~--~c~~~~~~~~~~~~~~~~~a---~spl~~~in~~i~~ 303 (370)
.+.+.++++++|.+ |++|+. +...|++++ .|+ +.+++..+...+|+++ ++|+++.+|++|.+
T Consensus 194 ~~i~~~~~~~~~~~~~~l~~~~GrvDa~i~~~~~~~~~~~~~~~~~-l~~~~~~~~~~~~~ia~~k~~~l~~~in~al~~ 272 (294)
T 2rc8_A 194 EYMRRYNVPATPDGVQYLKNDPEKLDAFIMDKALLDYEVSIDADCK-LLTVGKPFAIEGYGIGLPPNSPLTSNISELISQ 272 (294)
T ss_dssp HHHGGGCBSSHHHHHHHHHSSSCCCSEEEEEHHHHHHHHHTCSSSC-EEECSCCEEEEEECCEECTTCTHHHHHHHHHHH
T ss_pred HHHHHhcCCCHHHHHHHHHhccCceeEEEecHHHHHHHHhhCCCCC-EEEcCCcccccceEEEecCCCHHHHHHHHHHHH
Confidence 25678999999999 999993 344555554 366 8888877777778877 88999999999999
Q ss_pred hhhcCchhHHHHhhcCCC
Q 040220 304 LSENKKLKSLEYNEKELE 321 (370)
Q Consensus 304 l~e~G~~~~l~~~w~~~~ 321 (370)
|+++|.+++|.+||++..
T Consensus 273 l~~~G~~~~l~~kw~~~~ 290 (294)
T 2rc8_A 273 YKSHGFMDVLHDKWYKVV 290 (294)
T ss_dssp HHHTTHHHHHHHHHCCC-
T ss_pred HHhCCCHHHHHHhhcCCC
Confidence 999999999999999753
No 9
>3i6v_A Periplasmic His/Glu/Gln/Arg/opine family-binding; structural genomics, transporter, PSI-2, protein structure initiative; HET: LYS; 2.00A {Silicibacter pomeroyi} SCOP: c.94.1.0
Probab=99.84 E-value=1.5e-20 Score=169.89 Aligned_cols=189 Identities=19% Similarity=0.191 Sum_probs=153.5
Q ss_pred CCCccceEEeecCCCCCCceEEeeHHHHHHHHh-cCCceEE-EEehhhhhhhhccccccCCceeEEEeccccccccccee
Q 040220 3 TSFGKFVKVKFSDNPYENEYDGFCIELYYESQL-ACKGISI-LFFFLQLMMRIRHEENFLRNYDSVVGDATILADRAKIV 80 (370)
Q Consensus 3 ~~~~Pfv~~~~~~~~~~~~~~G~~idl~~~la~-lg~~~~i-~~~~~~li~~~~~~~L~~g~~Diai~~~tit~eR~~~v 80 (370)
++||||.+. +.++ ++.|+++||++++++ +|+++++ .+.+..++.+ |.+|++|+++++++.|++|.+.+
T Consensus 13 ~~~~P~~~~--~~~g---~~~G~~~dl~~~i~~~~g~~~~~~~~~~~~~~~~-----l~~g~~D~~~~~~~~t~~r~~~~ 82 (232)
T 3i6v_A 13 GAYPPYNFI--NDAG---EVDGFERELGDELCKRAGLTCEWVKNDWDSIIPN-----LVSGNYDTIIAGMSITDERDEVI 82 (232)
T ss_dssp SEETTTEEE--CTTS---CEESHHHHHHHHHHHHHTCCEEEEECCGGGHHHH-----HHTTSCSEECSSCBCCHHHHTTS
T ss_pred CCCCCeeEE--CCCC---CEeeehHHHHHHHHHHcCCceEEEECCHHHHHHH-----HHCCCCCEEEeCCcCCHHHHhhc
Confidence 578999999 6554 799999999999999 9988773 3346668888 99999999999999999999999
Q ss_pred eecccccccceEEEEeCCCCcCcceecccCchHHHHHHHHHHHHHHHHHHhccccCCCCCCCCCCCCccchHHHHHHHhH
Q 040220 81 EFTQPCAESRLSMIVPAKTEESAWRFMKPCTWEMWVVTDAILVNTRFVVWFPEHQRNSEFNGPRKDQIGTALWFNFSSIL 160 (370)
Q Consensus 81 dFS~P~~~~~~~ilv~~~~~~~~~~~l~PF~~~vW~~il~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~w~~~~~~~ 160 (370)
+||.||+..+..+++++++.
T Consensus 83 ~fs~p~~~~~~~~~~~~~~~------------------------------------------------------------ 102 (232)
T 3i6v_A 83 DFTQNYIPPTASSYVATSDG------------------------------------------------------------ 102 (232)
T ss_dssp EEEEEEECCCEEEEEESSTT------------------------------------------------------------
T ss_pred CcccccccCCeEEEEECCCh------------------------------------------------------------
Confidence 99999999999999987441
Q ss_pred hccCccceeeeeeccccCccccCcccchhhHHHHHHHHHHHHHHHHHhhcCCccccccccCCCCCeEeeeCChhHHHHHH
Q 040220 161 FAYGKEHVLHFIIMVNWKPIFGGRIDSNLTRLVVVVWLFVVLILTSSYTASPSPMLTVQPLRPNPKVACDRDSFVRNYLQ 240 (370)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~l~~~w~~~~lil~~~Yta~L~s~Lt~~~~~~~~~vg~~~~s~~~~~l~ 240 (370)
..+. + ++|+..|+....+++
T Consensus 103 ----------------------------------------------------------~dL~-g-~igv~~g~~~~~~l~ 122 (232)
T 3i6v_A 103 ----------------------------------------------------------ADLS-G-IVAAQTATIQAGYIA 122 (232)
T ss_dssp ----------------------------------------------------------CCTT-S-EEEEETTSHHHHHHH
T ss_pred ----------------------------------------------------------HHhC-C-CEEEecCchHHHHHH
Confidence 1122 7 889988888877776
Q ss_pred -------hcCChHHHHHHhhccccccc----chhHHHHhhcccceEEcCC-CCCccceeee---CC-cchHHHHHHHHHh
Q 040220 241 -------NFGSDYNYQGEFGSNHIAGP----PYEKVFVSQYCRIYAATTP-TYGFGGLGFL---SS-PIAADFSEAILKL 304 (370)
Q Consensus 241 -------~~~~~~~~~~~l~~g~~~a~----~~~~~~~~~~c~~~~~~~~-~~~~~~~~~a---~s-pl~~~in~~i~~l 304 (370)
.+.+.++++++|.+|++|+. +...+++++....+.+++. .+...+++++ ++ .+++.+|++|.++
T Consensus 123 ~~~~~~~~~~~~~~~~~~L~~GrvDa~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~l~~~ln~~l~~l 202 (232)
T 3i6v_A 123 ESGATLVEFATPEETIAAVRNGEADAVFADRDYLVPIVAESGGELMFVGDDVPLGGGVGMGLRESDGELRGKFDAAITSM 202 (232)
T ss_dssp HSSSEEEEESSHHHHHHHHHTTSSSEEEEEHHHHHHHHHHTTTSSEEEEEEEECSSCEEEEECTTCHHHHHHHHHHHHHH
T ss_pred hcCCeEEEeCCHHHHHHHHHcCCcCEEEEChHHHHHHHHhCCCCeEEecCCCCCCCcEEEEEeCCCHHHHHHHHHHHHHH
Confidence 46789999999999999993 3445556555233666654 3445667777 44 5999999999999
Q ss_pred hhcCchhHHHHhhcCCC
Q 040220 305 SENKKLKSLEYNEKELE 321 (370)
Q Consensus 305 ~e~G~~~~l~~~w~~~~ 321 (370)
.++|.++++.+||++..
T Consensus 203 ~~~G~~~~i~~k~~~~~ 219 (232)
T 3i6v_A 203 KEDGTLNTMIKKWFGED 219 (232)
T ss_dssp HHTSHHHHHHHHHHCTT
T ss_pred HHCChHHHHHHHHcCCC
Confidence 99999999999999876
No 10
>3kzg_A Arginine 3RD transport system periplasmic binding protein; arginine transport system, protein structure initiative II(PSI II); 2.06A {Legionella pneumophila subsp} SCOP: c.94.1.0
Probab=99.82 E-value=9.1e-20 Score=164.49 Aligned_cols=196 Identities=16% Similarity=0.127 Sum_probs=152.0
Q ss_pred CCCccceEEeecCCCCCCceEEeeHHHHHHHHh-cCCceEE-EEehhhhhhhhccccccCCceeEEEeccccccccccee
Q 040220 3 TSFGKFVKVKFSDNPYENEYDGFCIELYYESQL-ACKGISI-LFFFLQLMMRIRHEENFLRNYDSVVGDATILADRAKIV 80 (370)
Q Consensus 3 ~~~~Pfv~~~~~~~~~~~~~~G~~idl~~~la~-lg~~~~i-~~~~~~li~~~~~~~L~~g~~Diai~~~tit~eR~~~v 80 (370)
+++|||.+. .+ .++++.|+++|+++++++ +|+++++ .+.+..++.+ |.+|++|+++++++.+++|.+.+
T Consensus 11 ~~~~P~~~~--~~--~~g~~~G~~~dl~~~i~~~~g~~~~~~~~~~~~~~~~-----l~~g~~D~~~~~~~~~~~r~~~~ 81 (237)
T 3kzg_A 11 KFNPPFEVW--SG--NNSSLYGFDIDLMQEICRRLHATCTFEAYIFDDLFPA-----LKNREVDLVIASMIITDERKKHF 81 (237)
T ss_dssp SEETTTEEC--CC--TTSCCBSHHHHHHHHHHHHTTCEEEEEEECGGGHHHH-----HHTTSSSEECSSCBCCTTGGGTC
T ss_pred CCCCCeEEE--eC--CCCCEeeehHHHHHHHHHHhCCceEEEEcCHHHHHHH-----HhCCCCCEEEEccccChhHhccc
Confidence 458999987 22 234799999999999999 9888773 3456668888 99999999999999999999999
Q ss_pred eecccccccceEEEEeCCCCcCcceecccCchHHHHHHHHHHHHHHHHHHhccccCCCCCCCCCCCCccchHHHHHHHhH
Q 040220 81 EFTQPCAESRLSMIVPAKTEESAWRFMKPCTWEMWVVTDAILVNTRFVVWFPEHQRNSEFNGPRKDQIGTALWFNFSSIL 160 (370)
Q Consensus 81 dFS~P~~~~~~~ilv~~~~~~~~~~~l~PF~~~vW~~il~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~w~~~~~~~ 160 (370)
+||.||+..+..+++++++...
T Consensus 82 ~fs~p~~~~~~~~~~~~~~~~~---------------------------------------------------------- 103 (237)
T 3kzg_A 82 IFSLPYMESNSQYITTVDSKIS---------------------------------------------------------- 103 (237)
T ss_dssp EECCCSBCCEEEEEEETTCSCC----------------------------------------------------------
T ss_pred eeeeeeeecceEEEEECCCCCC----------------------------------------------------------
Confidence 9999999999999999865310
Q ss_pred hccCccceeeeeeccccCccccCcccchhhHHHHHHHHHHHHHHHHHhhcCCccccccccCCCCCeEeeeCChhHHHHHH
Q 040220 161 FAYGKEHVLHFIIMVNWKPIFGGRIDSNLTRLVVVVWLFVVLILTSSYTASPSPMLTVQPLRPNPKVACDRDSFVRNYLQ 240 (370)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~l~~~w~~~~lil~~~Yta~L~s~Lt~~~~~~~~~vg~~~~s~~~~~l~ 240 (370)
+.+.+. +.++|+..|+.....+.
T Consensus 104 --------------------------------------------------------~~~dL~-g~~i~~~~g~~~~~~~~ 126 (237)
T 3kzg_A 104 --------------------------------------------------------TFDDLH-GKKIGVRKGTPYARQVL 126 (237)
T ss_dssp --------------------------------------------------------SGGGGT-TCEEEEETTSTHHHHHH
T ss_pred --------------------------------------------------------CHHHhC-CCEEEEecCCHHHHHHH
Confidence 122233 77889888877555443
Q ss_pred ---------hcCChHHHHHHhhccccccc----chhHHHHhhcc-------cceEEcCCCC-Cccceeee----CCcchH
Q 040220 241 ---------NFGSDYNYQGEFGSNHIAGP----PYEKVFVSQYC-------RIYAATTPTY-GFGGLGFL----SSPIAA 295 (370)
Q Consensus 241 ---------~~~~~~~~~~~l~~g~~~a~----~~~~~~~~~~c-------~~~~~~~~~~-~~~~~~~a----~spl~~ 295 (370)
.+.+.++++++|.+|++|+. +...+.+++.. +.+.+++..+ ...+++++ +..+++
T Consensus 127 ~~~~~~~~~~~~~~~~~~~~l~~G~vDa~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~k~~~~l~~ 206 (237)
T 3kzg_A 127 SENRNNQVIFYELIQDMLLGLSNNQVDASLMDYEAAKYWMASEPYAYKLIGKKYKLIGKKISIGEGYSIMANPDQFVLIK 206 (237)
T ss_dssp HTCSSCEEEEESSHHHHHHHHHTTSSSEEEEEHHHHHHHHTTSSTTHHHHCCSEEEEEEEEECTTCBCCEECGGGHHHHH
T ss_pred HhCCCCcEEEeCCHHHHHHHHHcCCCCEEEeCcHHHHHHHHhCCccccccCCceEEecCccccCccEEEEEcCCCHHHHH
Confidence 35788999999999999993 33445555544 1477777666 66667776 456999
Q ss_pred HHHHHHHHhhhcCchhHHHHhhcCCCC
Q 040220 296 DFSEAILKLSENKKLKSLEYNEKELEP 322 (370)
Q Consensus 296 ~in~~i~~l~e~G~~~~l~~~w~~~~~ 322 (370)
.+|++|.++.++|.+++|.+||+...+
T Consensus 207 ~l~~~l~~l~~~G~~~~i~~k~~~~~~ 233 (237)
T 3kzg_A 207 KINKILLEMEADGTYLRLYSEYFEGHH 233 (237)
T ss_dssp HHHHHHHHHHHSSHHHHHHHHHC----
T ss_pred HHHHHHHHHHHCCcHHHHHHHHhCccc
Confidence 999999999999999999999998764
No 11
>3k4u_A Binding component of ABC transporter; structural genomics, protein structure INI NEW YORK structural genomix research consortium, nysgxrc; HET: LYS; 2.62A {Wolinella succinogenes} SCOP: c.94.1.0
Probab=99.81 E-value=2.2e-19 Score=162.77 Aligned_cols=197 Identities=13% Similarity=0.132 Sum_probs=155.8
Q ss_pred CCCccceEEeecCCCCCCceEEeeHHHHHHHHh-cCCceEEE-EehhhhhhhhccccccCCceeEEEeccccccccccee
Q 040220 3 TSFGKFVKVKFSDNPYENEYDGFCIELYYESQL-ACKGISIL-FFFLQLMMRIRHEENFLRNYDSVVGDATILADRAKIV 80 (370)
Q Consensus 3 ~~~~Pfv~~~~~~~~~~~~~~G~~idl~~~la~-lg~~~~i~-~~~~~li~~~~~~~L~~g~~Diai~~~tit~eR~~~v 80 (370)
+++|||.+. |.++ ++.|+++||++++++ +|+++++. +.+..++.+ |.+|++|+++++++.+++|.+.+
T Consensus 13 ~~~~P~~~~--~~~g---~~~G~~~dl~~~i~~~~g~~~~~~~~~~~~~~~~-----l~~g~~D~~~~~~~~t~~r~~~~ 82 (245)
T 3k4u_A 13 PGYLPFEMK--DKKG---NVIGFDVDLAREMAKAMGVKLKLVPTSWDGLIPG-----LVTEKFDIIISGMTISQERNLRV 82 (245)
T ss_dssp TTSTTTCEE--ETTT---EEESHHHHHHHHHHHHHTCEEEEEECCGGGHHHH-----HHTTSCSEECSSCBCCHHHHTTS
T ss_pred CCcCCeeEE--CCCC---CCccchHHHHHHHHHHhCCeEEEEEccHHHHHHH-----HhCCCcCEEEecCcCCHHHHhhc
Confidence 589999999 6554 799999999999999 98777632 345668888 99999999999999999999999
Q ss_pred eecccccccceEEEEeCCCCcCcceecccCchHHHHHHHHHHHHHHHHHHhccccCCCCCCCCCCCCccchHHHHHHHhH
Q 040220 81 EFTQPCAESRLSMIVPAKTEESAWRFMKPCTWEMWVVTDAILVNTRFVVWFPEHQRNSEFNGPRKDQIGTALWFNFSSIL 160 (370)
Q Consensus 81 dFS~P~~~~~~~ilv~~~~~~~~~~~l~PF~~~vW~~il~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~w~~~~~~~ 160 (370)
+||.|++.....+++++++.....
T Consensus 83 ~~s~p~~~~~~~~~~~~~~~~~i~-------------------------------------------------------- 106 (245)
T 3k4u_A 83 NFVEPYIVVGQSLLVKKGLEKGVK-------------------------------------------------------- 106 (245)
T ss_dssp EECSCSEEECEEEEEETTTTTTCC--------------------------------------------------------
T ss_pred CcchhhheeceEEEEECCcccccC--------------------------------------------------------
Confidence 999999999999999987421100
Q ss_pred hccCccceeeeeeccccCccccCcccchhhHHHHHHHHHHHHHHHHHhhcCCccccccccCCC-CCeEeeeCChhHHHHH
Q 040220 161 FAYGKEHVLHFIIMVNWKPIFGGRIDSNLTRLVVVVWLFVVLILTSSYTASPSPMLTVQPLRP-NPKVACDRDSFVRNYL 239 (370)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~l~~~w~~~~lil~~~Yta~L~s~Lt~~~~~~-~~~vg~~~~s~~~~~l 239 (370)
+++.+.. +.++|+..|+....++
T Consensus 107 --------------------------------------------------------~~~dL~~~g~~i~v~~g~~~~~~l 130 (245)
T 3k4u_A 107 --------------------------------------------------------SYKDLDKPELTLVTKFGVSAEYAA 130 (245)
T ss_dssp --------------------------------------------------------SGGGGCCSSCEEEEETTSHHHHHH
T ss_pred --------------------------------------------------------CHHHhccCCcEEEEeCCcHHHHHH
Confidence 0111211 6788998888777766
Q ss_pred H---------hcCChHHHHHHhhccccccc----chhHHHHhhcc-cceEEcCCCCCccceeee---CCc-chHHHHHHH
Q 040220 240 Q---------NFGSDYNYQGEFGSNHIAGP----PYEKVFVSQYC-RIYAATTPTYGFGGLGFL---SSP-IAADFSEAI 301 (370)
Q Consensus 240 ~---------~~~~~~~~~~~l~~g~~~a~----~~~~~~~~~~c-~~~~~~~~~~~~~~~~~a---~sp-l~~~in~~i 301 (370)
. .+.+.++++++|.+|++|+. +...+.+++.. +.+.+++..+...+++++ ++| +++.+|++|
T Consensus 131 ~~~~~~~~~~~~~~~~~~~~~L~~GrvDa~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~l~~~ln~~l 210 (245)
T 3k4u_A 131 KRLFKNAKLKTYDTEAEAVQEVLNGKADMFIFDLPFNVAFMAQKGQGYLVHLDTSLTYEPLGWAIKKGDPDFLNWLNHFL 210 (245)
T ss_dssp HHHCSSSEEEEESSHHHHHHHHHSSSSEEEEEEHHHHHHHHHHTTTTTEEEECCCCSCEEECCEECTTCHHHHHHHHHHH
T ss_pred HhhCCcCCEEEeCCHHHHHHHHHcCCCcEEEEcHHHHHHHHhcCCccceeecCCCcccccEEEEEcCCCHHHHHHHHHHH
Confidence 5 45788999999999999993 33445544443 346677777767777776 555 999999999
Q ss_pred HHhhhcCchhHHHHhhcCCC
Q 040220 302 LKLSENKKLKSLEYNEKELE 321 (370)
Q Consensus 302 ~~l~e~G~~~~l~~~w~~~~ 321 (370)
.++.++|.++++.++|++..
T Consensus 211 ~~l~~~g~~~~i~~k~~~~~ 230 (245)
T 3k4u_A 211 AQIKHDGSYDELYERWFVDT 230 (245)
T ss_dssp HHHHHHSHHHHHHHHHHTCC
T ss_pred HHHHhCcHHHHHHHHhcCcc
Confidence 99999999999999999875
No 12
>2v3u_A Glutamate receptor delta-2 subunit; postsynaptic membrane, ionotropic glutamate receptors, transmembrane, membrane protein; 1.74A {Rattus norvegicus} PDB: 2v3t_A
Probab=99.81 E-value=1.5e-19 Score=165.38 Aligned_cols=198 Identities=19% Similarity=0.166 Sum_probs=141.1
Q ss_pred CCccceEEeecCC--CCCCceEEeeHHHHHHHHh-cCCceEEEE-------------ehhhhhhhhccccccCCceeEEE
Q 040220 4 SFGKFVKVKFSDN--PYENEYDGFCIELYYESQL-ACKGISILF-------------FFLQLMMRIRHEENFLRNYDSVV 67 (370)
Q Consensus 4 ~~~Pfv~~~~~~~--~~~~~~~G~~idl~~~la~-lg~~~~i~~-------------~~~~li~~~~~~~L~~g~~Diai 67 (370)
++|||.+. +.+ +.++++.|+++||++++++ +|+++++.. .+..++.+ |.+|++|+++
T Consensus 11 ~~pP~~~~--~~~~~g~~g~~~G~~~dl~~~i~~~lg~~~~~~~~~~~~~g~~~~~~~~~~~~~~-----l~~g~~D~~~ 83 (265)
T 2v3u_A 11 LEEPFVMV--SENVLGKPKKYQGFSIDVLDALSNYLGFNYEIYVAPDHKYGSPQEDGTWNGLVGE-----LVFKRADIGI 83 (265)
T ss_dssp CBTTTBEE--ECCSTTCCCEEESHHHHHHHHHHHHHTCEEEEEECTTCCCCCBCTTSCBCHHHHH-----HHTTSCSEEC
T ss_pred ccCCeEEE--ecCCCCCcceEeEEEHHHHHHHHHHcCCcEEEEEccCCcccccCCCCCcchHHHH-----HHcCCcCeEE
Confidence 45999999 554 3336899999999999999 988776432 34558888 9999999999
Q ss_pred ecccccccccceeeecccccccceEEEEeCCCCcCcceecccCchHHHHHHHHHHHHHHHHHHhccccCCCCCCCCCCCC
Q 040220 68 GDATILADRAKIVEFTQPCAESRLSMIVPAKTEESAWRFMKPCTWEMWVVTDAILVNTRFVVWFPEHQRNSEFNGPRKDQ 147 (370)
Q Consensus 68 ~~~tit~eR~~~vdFS~P~~~~~~~ilv~~~~~~~~~~~l~PF~~~vW~~il~~~~~~~~~~~~~~r~~~~~~~~~~~~~ 147 (370)
+++++|++|.+.++||.||+..+.++++++++..+.+.-++ +.
T Consensus 84 ~~~~~t~~R~~~~~fs~p~~~~~~~~~~~~~~~i~~~~dL~---------------------------------~~---- 126 (265)
T 2v3u_A 84 SALTITPDRENVVDFTTRYMDYSVGVLLRRGTSIQSLQDLS---------------------------------KQ---- 126 (265)
T ss_dssp SSCBCCHHHHTTEEECSCSEEECEEEEEETTCCCCSHHHHH---------------------------------TC----
T ss_pred eeeEeehhhhccccccceeeeccEEEEEECCCCccchhhhh---------------------------------hh----
Confidence 99999999999999999999999999999865321110000 00
Q ss_pred ccchHHHHHHHhHhccCccceeeeeeccccCccccCcccchhhHHHHHHHHHHHHHHHHHhhcCCccccccccCCCCCeE
Q 040220 148 IGTALWFNFSSILFAYGKEHVLHFIIMVNWKPIFGGRIDSNLTRLVVVVWLFVVLILTSSYTASPSPMLTVQPLRPNPKV 227 (370)
Q Consensus 148 ~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~l~~~w~~~~lil~~~Yta~L~s~Lt~~~~~~~~~v 227 (370)
. +...
T Consensus 127 --------------v-------------------------------------------------------------~v~~ 131 (265)
T 2v3u_A 127 --------------T-------------------------------------------------------------DIPY 131 (265)
T ss_dssp --------------S-------------------------------------------------------------SSCE
T ss_pred --------------h-------------------------------------------------------------cEEE
Confidence 0 0001
Q ss_pred eeeCChhHHHH----------------------------HHhcCChHHHHHHhhcccccc---cchhHHHHhhc--ccce
Q 040220 228 ACDRDSFVRNY----------------------------LQNFGSDYNYQGEFGSNHIAG---PPYEKVFVSQY--CRIY 274 (370)
Q Consensus 228 g~~~~s~~~~~----------------------------l~~~~~~~~~~~~l~~g~~~a---~~~~~~~~~~~--c~~~ 274 (370)
|...++...++ ...+.+.++++++|.+|++++ .+...+++++. |+ +
T Consensus 132 g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~G~~a~~~~~~~~~~~~~~~~~~~-l 210 (265)
T 2v3u_A 132 GTVLDSAVYQHVRMKGLNPFERDSMYSQMWRMINRSNGSENNVLESQAGIQKVKYGNYAFVWDAAVLEYVAINDPDCS-F 210 (265)
T ss_dssp ECBTTSHHHHHHHHHHTCTTCSCTHHHHHHHHHCC-----CCBSSHHHHHHHHHHSSCEEEEEHHHHHHHHHHCTTCC-E
T ss_pred EEeccHHHHHHHHhcCCCcccccHHHHHHHHHHHhhcCcccccCCHHHHHHHHHcCCEEEEEcchHHHHHHhcCCCcc-E
Confidence 11111111110 114678899999999999933 23344555443 55 7
Q ss_pred EEcCCCCCccceeee---CCcchHHHHHHHHHhhhcCchhHHHHhhcCCC
Q 040220 275 AATTPTYGFGGLGFL---SSPIAADFSEAILKLSENKKLKSLEYNEKELE 321 (370)
Q Consensus 275 ~~~~~~~~~~~~~~a---~spl~~~in~~i~~l~e~G~~~~l~~~w~~~~ 321 (370)
.+++..+...+++++ ++|+++.+|++|.+|.++|.+++|.++|++..
T Consensus 211 ~~~~~~~~~~~~~~~~~k~~~l~~~in~~l~~l~~~g~~~~i~~kw~~~~ 260 (265)
T 2v3u_A 211 YTVGNTVADRGYGIALQHGSPYRDVFSQRILELQQSGDMDILKHKWWPKN 260 (265)
T ss_dssp EEEC---CCEEECCEEETTCTTHHHHHHHHHHHHHHTHHHHHHHHHCCCC
T ss_pred EEeccccCCcceEEEEeCCCccHHHHHHHHHHHhhCChHHHHHhhcCCCc
Confidence 788777777777776 77899999999999999999999999999875
No 13
>3hv1_A Polar amino acid ABC uptake transporter substrate binding protein; protein structure initiative II(PSI II), nysgxrc; 1.90A {Streptococcus thermophilus lmg 18311}
Probab=99.80 E-value=1.7e-19 Score=165.87 Aligned_cols=194 Identities=11% Similarity=0.108 Sum_probs=154.1
Q ss_pred CCCccceEEeecCCCCCCceEEeeHHHHHHHHh-cCCceEE-EEehhhhhhhhccccccCCceeEEEeccccccccccee
Q 040220 3 TSFGKFVKVKFSDNPYENEYDGFCIELYYESQL-ACKGISI-LFFFLQLMMRIRHEENFLRNYDSVVGDATILADRAKIV 80 (370)
Q Consensus 3 ~~~~Pfv~~~~~~~~~~~~~~G~~idl~~~la~-lg~~~~i-~~~~~~li~~~~~~~L~~g~~Diai~~~tit~eR~~~v 80 (370)
++||||.+. +.++ ++.|+++||++.+++ +|+++++ .+.+..++.+ |.+|++|+++++++.+++|.+.+
T Consensus 29 ~~~~P~~~~--~~~g---~~~G~~~dl~~~i~~~~g~~~~~~~~~~~~~~~~-----l~~g~~D~~~~~~~~t~~r~~~~ 98 (268)
T 3hv1_A 29 ATFVPMGYE--EKDG---SYIGFDIDLANAVFKLYGIDVEWQAIDWDMKETE-----LKNGTIDLIWNGYSVTDERKQSA 98 (268)
T ss_dssp TEETTTEEE--CTTS---CEECHHHHHHHHHHHTTTCEEEEEECCGGGHHHH-----HHHTSCSEECSSCBCCHHHHTTC
T ss_pred CCCCCceEE--CCCC---CEEEehHHHHHHHHHHhCCcEEEEECCHHHHHHH-----HHCCCCCEEEecCccCHHHHhcC
Confidence 578999999 6544 799999999999999 9887763 3446668888 99999999999999999999999
Q ss_pred eecccccccceEEEEeCCCCcCcceecccCchHHHHHHHHHHHHHHHHHHhccccCCCCCCCCCCCCccchHHHHHHHhH
Q 040220 81 EFTQPCAESRLSMIVPAKTEESAWRFMKPCTWEMWVVTDAILVNTRFVVWFPEHQRNSEFNGPRKDQIGTALWFNFSSIL 160 (370)
Q Consensus 81 dFS~P~~~~~~~ilv~~~~~~~~~~~l~PF~~~vW~~il~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~w~~~~~~~ 160 (370)
+||.|++.....+++++++..+
T Consensus 99 ~fs~p~~~~~~~~~~~~~~~i~---------------------------------------------------------- 120 (268)
T 3hv1_A 99 DFTEPYMVNEQVLVTKKSSGID---------------------------------------------------------- 120 (268)
T ss_dssp EECCCCEEECEEEEEEGGGCCC----------------------------------------------------------
T ss_pred cCcHHHeeCceEEEEECCCCCC----------------------------------------------------------
Confidence 9999999999999999754210
Q ss_pred hccCccceeeeeeccccCccccCcccchhhHHHHHHHHHHHHHHHHHhhcCCccccccccCCCCCeEeeeCChhHHHHHH
Q 040220 161 FAYGKEHVLHFIIMVNWKPIFGGRIDSNLTRLVVVVWLFVVLILTSSYTASPSPMLTVQPLRPNPKVACDRDSFVRNYLQ 240 (370)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~l~~~w~~~~lil~~~Yta~L~s~Lt~~~~~~~~~vg~~~~s~~~~~l~ 240 (370)
++..+. +.++|+..|+....++.
T Consensus 121 --------------------------------------------------------~~~dL~-g~~i~v~~g~~~~~~l~ 143 (268)
T 3hv1_A 121 --------------------------------------------------------SVAGMA-GKTLGAQAGSSGYDAFN 143 (268)
T ss_dssp --------------------------------------------------------SSGGGT-TCCEEEETTCHHHHHHH
T ss_pred --------------------------------------------------------CHHHhC-CCEEEEEeCCchHHHHH
Confidence 012222 67788887776665543
Q ss_pred ----------------hcCChHHHHHHhhccccccc----chhHHHHhhcc--cceEEcCCCCCccceeee---CC-cch
Q 040220 241 ----------------NFGSDYNYQGEFGSNHIAGP----PYEKVFVSQYC--RIYAATTPTYGFGGLGFL---SS-PIA 294 (370)
Q Consensus 241 ----------------~~~~~~~~~~~l~~g~~~a~----~~~~~~~~~~c--~~~~~~~~~~~~~~~~~a---~s-pl~ 294 (370)
.+.+.++++++|.+|++|+. +...+.+++.. +.+.+++..+...+++++ ++ .++
T Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~GrvDa~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~k~~~~l~ 223 (268)
T 3hv1_A 144 ASPKILKDVVANQKVVQYSTFTQALIDLNSGRIDGLLIDRVYANYYLEKSGVLDQYNVMPAGYEGESFAVGARKVDKTLI 223 (268)
T ss_dssp HCTTTTTTTSGGGCEEEESSHHHHHHHHHHTSCSEEEEEHHHHHHHHHHTTCGGGEEEEECSSCCEEECCEECTTCHHHH
T ss_pred HhhHHHhhhcccceEEEeCCHHHHHHHHHcCCCCEEEeCHHHHHHHHHhCCCCCceEECCCCCCCCcEEEEEcCCCHHHH
Confidence 35678999999999999993 33445555543 447777776767777776 45 599
Q ss_pred HHHHHHHHHhhhcCchhHHHHhhcCCC
Q 040220 295 ADFSEAILKLSENKKLKSLEYNEKELE 321 (370)
Q Consensus 295 ~~in~~i~~l~e~G~~~~l~~~w~~~~ 321 (370)
+.+|++|.++.++|.++++.++|++..
T Consensus 224 ~~ln~~l~~l~~~g~~~~i~~k~~~~~ 250 (268)
T 3hv1_A 224 KKINQGFETLYKNGEFQKISNKWFGED 250 (268)
T ss_dssp HHHHHHHHHHHHHTHHHHHHHHHHSSC
T ss_pred HHHHHHHHHHHhCCHHHHHHHHhcCCC
Confidence 999999999999999999999999875
No 14
>4f3p_A Glutamine-binding periplasmic protein; ssgcid, structural genomics, GLUT seattle structural genomics center for infectious disease; 2.40A {Burkholderia pseudomallei}
Probab=99.80 E-value=3.5e-19 Score=162.05 Aligned_cols=195 Identities=19% Similarity=0.246 Sum_probs=155.6
Q ss_pred CCCccceEEeecCCCCCCceEEeeHHHHHHHHh-cCCceEE-EEehhhhhhhhccccccCCceeEEEeccccccccccee
Q 040220 3 TSFGKFVKVKFSDNPYENEYDGFCIELYYESQL-ACKGISI-LFFFLQLMMRIRHEENFLRNYDSVVGDATILADRAKIV 80 (370)
Q Consensus 3 ~~~~Pfv~~~~~~~~~~~~~~G~~idl~~~la~-lg~~~~i-~~~~~~li~~~~~~~L~~g~~Diai~~~tit~eR~~~v 80 (370)
++||||.+. . + +++.|+++||++.+++ +|+++++ .+.+..++.+ |.+|++|+++++++.+++|.+.+
T Consensus 32 ~~~~P~~~~--~-~---g~~~G~~~dl~~~i~~~~g~~~~~~~~~~~~~~~~-----l~~g~~D~~~~~~~~~~~r~~~~ 100 (249)
T 4f3p_A 32 TSFMPFEFK--Q-G---DKYVGFDLDLWAEIAKGAGWTYKIQPMDFAGLIPA-----LQTQNIDVALSGMTIKEERRKAI 100 (249)
T ss_dssp SCBTTTBEE--E-T---TEEESHHHHHHHHHHHHHTCCEEEEEECGGGHHHH-----HHTTSCSEEEEEEECCHHHHTTE
T ss_pred CCCCCeEEe--c-C---CeEEEEhHHHHHHHHHHcCCceEEEecCHHHHHHH-----HHCCCCCEEEeccccCHHHHcCc
Confidence 479999987 2 3 3799999999999999 9988773 3456668888 99999999999999999999999
Q ss_pred eecccccccceEEEEeCCCCcCcceecccCchHHHHHHHHHHHHHHHHHHhccccCCCCCCCCCCCCccchHHHHHHHhH
Q 040220 81 EFTQPCAESRLSMIVPAKTEESAWRFMKPCTWEMWVVTDAILVNTRFVVWFPEHQRNSEFNGPRKDQIGTALWFNFSSIL 160 (370)
Q Consensus 81 dFS~P~~~~~~~ilv~~~~~~~~~~~l~PF~~~vW~~il~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~w~~~~~~~ 160 (370)
+||.|++.....+++++++.. .
T Consensus 101 ~~s~p~~~~~~~~~~~~~~~~-i--------------------------------------------------------- 122 (249)
T 4f3p_A 101 DFSDPYYDSGLAAMVQANNTT-I--------------------------------------------------------- 122 (249)
T ss_dssp EECSCCEEEEEEEEEETTCCS-C---------------------------------------------------------
T ss_pred ceecceeeccEEEEEECCCCC-c---------------------------------------------------------
Confidence 999999999999999876520 0
Q ss_pred hccCccceeeeeeccccCccccCcccchhhHHHHHHHHHHHHHHHHHhhcCCccccccccCCCCCeEeeeCChhHHHHHH
Q 040220 161 FAYGKEHVLHFIIMVNWKPIFGGRIDSNLTRLVVVVWLFVVLILTSSYTASPSPMLTVQPLRPNPKVACDRDSFVRNYLQ 240 (370)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~l~~~w~~~~lil~~~Yta~L~s~Lt~~~~~~~~~vg~~~~s~~~~~l~ 240 (370)
+ +++.+. +.++|+..++....++.
T Consensus 123 -------------------------~------------------------------~~~dL~-g~~i~v~~g~~~~~~l~ 146 (249)
T 4f3p_A 123 -------------------------K------------------------------SIDDLN-GKVIAAKTGTATIDWIK 146 (249)
T ss_dssp -------------------------C------------------------------SSGGGT-TSEEEEETTSHHHHHHH
T ss_pred -------------------------C------------------------------ChHHhC-CCEEEEeCCChHHHHHH
Confidence 0 122233 77899988887777665
Q ss_pred ---------hcCChHHHHHHhhccccccc----chhHHHHhhcc-cceEEcCCCCCccceeee---CCcchHHHHHHHHH
Q 040220 241 ---------NFGSDYNYQGEFGSNHIAGP----PYEKVFVSQYC-RIYAATTPTYGFGGLGFL---SSPIAADFSEAILK 303 (370)
Q Consensus 241 ---------~~~~~~~~~~~l~~g~~~a~----~~~~~~~~~~c-~~~~~~~~~~~~~~~~~a---~spl~~~in~~i~~ 303 (370)
.+.+.++++++|.+|++|+. ....+.+++.. +.+.+++..+...+++++ ++|+++.+|++|.+
T Consensus 147 ~~~~~~~~~~~~~~~~~~~~L~~GrvDa~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~k~~~l~~~l~~~l~~ 226 (249)
T 4f3p_A 147 AHLKPKEIRQFPNIDQAYLALEAGRVDAAMHDTPNVLFFVNNEGKGRVKVAGAPVSGDKYGIGFPKGSPLVAKVNAELAR 226 (249)
T ss_dssp HHCCCSEEEEESSHHHHHHHHHTTSSSEEEEEHHHHHHHHHTTTTTTEEEEEEEEEEEEEEEEEETTCTHHHHHHHHHHH
T ss_pred hcCCCceEEEcCCHHHHHHHHHcCCeeEEEeCcHHHHHHHHhCCCCceEEecCCCCCccEEEEEcCCchHHHHHHHHHHH
Confidence 45788999999999999993 33445555443 346677666666677776 66799999999999
Q ss_pred hhhcCchhHHHHhhcCCCC
Q 040220 304 LSENKKLKSLEYNEKELEP 322 (370)
Q Consensus 304 l~e~G~~~~l~~~w~~~~~ 322 (370)
+.++|.++++.++|++...
T Consensus 227 l~~~g~~~~i~~k~~~~~~ 245 (249)
T 4f3p_A 227 MKADGRYAKIYKKWFGSEP 245 (249)
T ss_dssp HHHHTHHHHHHHHHHSSCC
T ss_pred HHhCCcHHHHHHHHcCCCC
Confidence 9999999999999998764
No 15
>1mqi_A Glutamate receptor 2; GLUR2, ligand binding core, S1S2, partial agonist, WILLARDIINES, fluoro-WILLARDIINE, membrane protein; HET: FWD; 1.35A {Rattus norvegicus} SCOP: c.94.1.1 PDB: 1ftj_A* 1ftl_A* 1fto_A 1fw0_A* 1m5b_A* 1ftm_A* 1m5c_A* 1mm6_A* 1mm7_A* 1mqg_A* 1m5e_A* 1mqj_A* 1ms7_A* 1mxu_A* 1mxv_A 1mxw_A 1mxx_A 1mxy_A 1mxz_A 1my0_A ...
Probab=99.80 E-value=2.8e-19 Score=164.03 Aligned_cols=198 Identities=14% Similarity=0.155 Sum_probs=143.7
Q ss_pred CCCccceEEeecCC----CCCCceEEeeHHHHHHHHh-cCCceEEE-E-------------ehhhhhhhhccccccCCce
Q 040220 3 TSFGKFVKVKFSDN----PYENEYDGFCIELYYESQL-ACKGISIL-F-------------FFLQLMMRIRHEENFLRNY 63 (370)
Q Consensus 3 ~~~~Pfv~~~~~~~----~~~~~~~G~~idl~~~la~-lg~~~~i~-~-------------~~~~li~~~~~~~L~~g~~ 63 (370)
.++|||.+. +.+ ++++++.||++||++++++ +|+++++. + .+..++.+ |.+|++
T Consensus 11 ~~~pP~~~~--~~~~~~~~~~g~~~G~~~dl~~~ia~~lg~~~~~~~~~~~~~g~~~~~~~~~~~~~~~-----l~~g~~ 83 (263)
T 1mqi_A 11 ILESPYVMM--KKNHEMLEGNERYEGYCVDLAAEIAKHCGFKYKLTIVGDGKYGARDADTKIWNGMVGE-----LVYGKA 83 (263)
T ss_dssp CCBTTTBEE--CTTGGGCCGGGGEESHHHHHHHHHHHHHTCCEEEEECTTCCCCCBCTTTCCBCHHHHH-----HHTTSC
T ss_pred ecCCCcEEE--ecCcccccCCCceeeeHHHHHHHHHHHcCceEEEEEccccccCccCCCCCCcHHHHHH-----HHcCCc
Confidence 358999999 553 1124899999999999999 99887743 3 45568888 999999
Q ss_pred eEEEecccccccccceeeecccccccceEEEEeCCCCcCcceecccCchHHHHHHHHHHHHHHHHHHhccccCCCCCCCC
Q 040220 64 DSVVGDATILADRAKIVEFTQPCAESRLSMIVPAKTEESAWRFMKPCTWEMWVVTDAILVNTRFVVWFPEHQRNSEFNGP 143 (370)
Q Consensus 64 Diai~~~tit~eR~~~vdFS~P~~~~~~~ilv~~~~~~~~~~~l~PF~~~vW~~il~~~~~~~~~~~~~~r~~~~~~~~~ 143 (370)
|++++++++|++|.+.++||.||+..+.+++++++++.+.+.-+
T Consensus 84 D~~~~~~~~t~~R~~~~~fs~p~~~~~~~~~~~~~~~i~~~~dL------------------------------------ 127 (263)
T 1mqi_A 84 DIAIAPLTITLVREEVIDFSKPFMSLGISIMIKKGTPIESAEDL------------------------------------ 127 (263)
T ss_dssp SEECSSCBCCHHHHTTEEECSCSEEECEEEEEETTCSCCSHHHH------------------------------------
T ss_pred CEEEEeeEecHHHHhhcccccceecccEEEEEcCccccCCHHHH------------------------------------
Confidence 99999999999999999999999999999999986531110000
Q ss_pred CCCCccchHHHHHHHhHhccCccceeeeeeccccCccccCcccchhhHHHHHHHHHHHHHHHHHhhcCCccccccccCCC
Q 040220 144 RKDQIGTALWFNFSSILFAYGKEHVLHFIIMVNWKPIFGGRIDSNLTRLVVVVWLFVVLILTSSYTASPSPMLTVQPLRP 223 (370)
Q Consensus 144 ~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~l~~~w~~~~lil~~~Yta~L~s~Lt~~~~~~ 223 (370)
.| .+
T Consensus 128 -------------------~g------------------~~--------------------------------------- 131 (263)
T 1mqi_A 128 -------------------SK------------------QT--------------------------------------- 131 (263)
T ss_dssp -------------------HT------------------CS---------------------------------------
T ss_pred -------------------hc------------------cc---------------------------------------
Confidence 00 00
Q ss_pred CCeEee-eCChhHHHHH--------------------HhcCChHHHHHHh--hccccccc----chhHHHHhhc-ccceE
Q 040220 224 NPKVAC-DRDSFVRNYL--------------------QNFGSDYNYQGEF--GSNHIAGP----PYEKVFVSQY-CRIYA 275 (370)
Q Consensus 224 ~~~vg~-~~~s~~~~~l--------------------~~~~~~~~~~~~l--~~g~~~a~----~~~~~~~~~~-c~~~~ 275 (370)
...+|+ ..++....+. ..+.+.++++++| .+|+ |+. +...+..++. |+ +.
T Consensus 132 ~~~ig~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~-da~~~~~~~~~~~~~~~~~~-~~ 209 (263)
T 1mqi_A 132 EIAYGTLDSGSTKEFFRRSKIAVFDKMWTYMRSAEPSVFVRTTAEGVARVRKSKGK-YAYLLESTMNEYIEQRKPCD-TM 209 (263)
T ss_dssp SSEEECBSSSHHHHHHHHCCSHHHHHHHHHHHHCSSCCCBSSHHHHHHHHHHTTTS-EEEEEEHHHHHHHTTSTTCC-EE
T ss_pred CeeEEEEeccHHHHHHHhccchhHHHHHHHHhhCCCceecCCHHHHHHHHhhcCCc-EEEEechHHHHHHHhcCCCc-eE
Confidence 001221 1222111111 1356789999999 9999 662 3344555544 44 66
Q ss_pred EcCCCCCccceeee---CCcchHHHHHHHHHhhhcCchhHHHHhhcCCC
Q 040220 276 ATTPTYGFGGLGFL---SSPIAADFSEAILKLSENKKLKSLEYNEKELE 321 (370)
Q Consensus 276 ~~~~~~~~~~~~~a---~spl~~~in~~i~~l~e~G~~~~l~~~w~~~~ 321 (370)
+++..+...+++++ ++++++.+|++|.+|.++|.+++|.++|+...
T Consensus 210 ~~~~~~~~~~~~~~~~k~~~l~~~in~~l~~l~~~g~~~~i~~k~~~~~ 258 (263)
T 1mqi_A 210 KVGGNLDSKGYGIATPKGSSLGNAVNLAVLKLNEQGLLDKLKNKWWYDK 258 (263)
T ss_dssp EESCCSCCEEECCEEETTCTTHHHHHHHHHHHHHTTHHHHHHHHHHTTT
T ss_pred EcCCcccccceEEEEeCCCccHHHHHHHHHHHHhcccHHHHHHHHcCCC
Confidence 77777777777777 77999999999999999999999999999764
No 16
>3kbr_A Cyclohexadienyl dehydratase; pseudomonas aeruginos structural genomics, PSI-2, protein structure initiative; HET: EPE; 1.66A {Pseudomonas aeruginosa}
Probab=99.80 E-value=1.6e-19 Score=162.72 Aligned_cols=195 Identities=10% Similarity=0.083 Sum_probs=150.8
Q ss_pred CCCccceEEeecCCCCCCceEEeeHHHHHHHHh-cCCceEE-EEehhhhhhhhccccccCCceeEEEeccccccccccee
Q 040220 3 TSFGKFVKVKFSDNPYENEYDGFCIELYYESQL-ACKGISI-LFFFLQLMMRIRHEENFLRNYDSVVGDATILADRAKIV 80 (370)
Q Consensus 3 ~~~~Pfv~~~~~~~~~~~~~~G~~idl~~~la~-lg~~~~i-~~~~~~li~~~~~~~L~~g~~Diai~~~tit~eR~~~v 80 (370)
+++|||.+. +.++ ++.|+++|+++++++ +|+++++ .+.+..++.+ |.+|++|+++++++.+++|.+.+
T Consensus 23 ~~~~P~~~~--~~~g---~~~G~~~dl~~~i~~~~g~~~~~~~~~~~~~~~~-----l~~g~~D~~~~~~~~t~~r~~~~ 92 (239)
T 3kbr_A 23 GDYKPFSYR--TEEG---GYAGFDVDMAQRLAESLGAKLVVVPTSWPNLMRD-----FADDRFDIAMSGISINLERQRQA 92 (239)
T ss_dssp SEETTTEEE--CTTS---CEESHHHHHHHHHHHHTTCEEEEEECCTTTHHHH-----HHTTCCSEECSSCBCCHHHHTTC
T ss_pred CCCCCeeEE--CCCC---CEEeehHHHHHHHHHHHCCceEEEEeCHHHHHHH-----HHCCCcCEEEeCCcCCHHHcCcc
Confidence 568999999 6544 799999999999999 9877663 2345558888 99999999999999999999999
Q ss_pred eecccccccceEEEEeCCCCcCcceecccCchHHHHHHHHHHHHHHHHHHhccccCCCCCCCCCCCCccchHHHHHHHhH
Q 040220 81 EFTQPCAESRLSMIVPAKTEESAWRFMKPCTWEMWVVTDAILVNTRFVVWFPEHQRNSEFNGPRKDQIGTALWFNFSSIL 160 (370)
Q Consensus 81 dFS~P~~~~~~~ilv~~~~~~~~~~~l~PF~~~vW~~il~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~w~~~~~~~ 160 (370)
+||.||+..+..+++++++....
T Consensus 93 ~fs~p~~~~~~~~~~~~~~~~~i--------------------------------------------------------- 115 (239)
T 3kbr_A 93 YFSIPYLRDGKTPITLCSEEARF--------------------------------------------------------- 115 (239)
T ss_dssp EECSCSEEECEEEEEEGGGGGGG---------------------------------------------------------
T ss_pred ccchHHhccCcEEEEECCccccc---------------------------------------------------------
Confidence 99999999999999997642100
Q ss_pred hccCccceeeeeeccccCccccCcccchhhHHHHHHHHHHHHHHHHHhhcCCccccccccCCC-CCeEeeeCChhHHHHH
Q 040220 161 FAYGKEHVLHFIIMVNWKPIFGGRIDSNLTRLVVVVWLFVVLILTSSYTASPSPMLTVQPLRP-NPKVACDRDSFVRNYL 239 (370)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~l~~~w~~~~lil~~~Yta~L~s~Lt~~~~~~-~~~vg~~~~s~~~~~l 239 (370)
+ +++.+.. +.++|+..|+....++
T Consensus 116 -------------------------~------------------------------~~~dL~~~g~~v~~~~g~~~~~~l 140 (239)
T 3kbr_A 116 -------------------------Q------------------------------TLEQIDQPGVTAIVNPGGTNEKFA 140 (239)
T ss_dssp -------------------------S------------------------------SHHHHSSTTCEEEECTTSHHHHHH
T ss_pred -------------------------C------------------------------CHHHhcCCCcEEEEcCCCcHHHHH
Confidence 0 0111111 5688888888777766
Q ss_pred H---------hcCChHHHHHHhhccccccc----chhHHHHhhcccceEEcC--CCCCccceeee---CCcchHHHHHHH
Q 040220 240 Q---------NFGSDYNYQGEFGSNHIAGP----PYEKVFVSQYCRIYAATT--PTYGFGGLGFL---SSPIAADFSEAI 301 (370)
Q Consensus 240 ~---------~~~~~~~~~~~l~~g~~~a~----~~~~~~~~~~c~~~~~~~--~~~~~~~~~~a---~spl~~~in~~i 301 (370)
+ .+.+.++++++|.+|++|+. +...+.++++.+ +.++. ..+...+++++ +..+++.+|++|
T Consensus 141 ~~~~~~~~~~~~~~~~~~~~~l~~grvDa~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~k~~~l~~~ln~~l 219 (239)
T 3kbr_A 141 RANLKKARILVHPDNVTIFQQIVDGKADLMMTDAIEARLQSRLHPE-LCAVHPQQPFDFAEKAYLLPRDEAFKRYVDQWL 219 (239)
T ss_dssp HHHCSSSEEEECCCTTTHHHHHHTTSCSEEEEEHHHHHHHHHHCTT-EEECCCC-CCCCEEECCEECSCHHHHHHHHHHH
T ss_pred HHhCCCCceEEeCCHHHHHHHHHcCCcCEEEEchHHHHHHHHhCCC-cEEecCCCCccccceEEEEcCCHHHHHHHHHHH
Confidence 5 35788999999999999993 344556666655 55543 33556666666 667999999999
Q ss_pred HHhhhcCchhHHHHhhcCC
Q 040220 302 LKLSENKKLKSLEYNEKEL 320 (370)
Q Consensus 302 ~~l~e~G~~~~l~~~w~~~ 320 (370)
.+|.++|.++++.++|++.
T Consensus 220 ~~l~~~g~~~~i~~k~~~~ 238 (239)
T 3kbr_A 220 HIAEQSGLLRQRMEHWLEY 238 (239)
T ss_dssp HHHHHHTHHHHHHHHHC--
T ss_pred HHHHHCCcHHHHHHHHhcc
Confidence 9999999999999999974
No 17
>3tql_A Arginine-binding protein; transport and binding proteins, transport protein; HET: MSE ARG; 1.59A {Coxiella burnetii} SCOP: c.94.1.0
Probab=99.79 E-value=7.9e-19 Score=156.05 Aligned_cols=192 Identities=18% Similarity=0.237 Sum_probs=147.0
Q ss_pred CCCccceEEeecCCCCCCceEEeeHHHHHHHHh-cCCceEEE-EehhhhhhhhccccccCCceeEEEeccccccccccee
Q 040220 3 TSFGKFVKVKFSDNPYENEYDGFCIELYYESQL-ACKGISIL-FFFLQLMMRIRHEENFLRNYDSVVGDATILADRAKIV 80 (370)
Q Consensus 3 ~~~~Pfv~~~~~~~~~~~~~~G~~idl~~~la~-lg~~~~i~-~~~~~li~~~~~~~L~~g~~Diai~~~tit~eR~~~v 80 (370)
+++|||.+. +.++ ++.|+++|+++++++ +|+++++. +.+..++.+ |.+|++|+++++++.+++|.+.+
T Consensus 10 ~~~~P~~~~--~~~g---~~~G~~~dl~~~i~~~~g~~~~~~~~~~~~~~~~-----l~~g~~D~~~~~~~~~~~r~~~~ 79 (227)
T 3tql_A 10 ATYPPYVYM--GPSG---QVEGFGADIVKAVCKQMQAVCTISNQPWDSLIPS-----LKLGKFDALFGGMNITTARQKEV 79 (227)
T ss_dssp SCBTTTBEE--C--C---CEESHHHHHHHHHHHHTTCEEEEEECCHHHHHHH-----HHHTSCSEECSSCBCCTTGGGTE
T ss_pred CCCCCeeEE--CCCC---CcccchHHHHHHHHHHhCCeEEEEeCCHHHHHHH-----HhCCCCCEEEecCcCCHhHHhhe
Confidence 469999999 6554 799999999999999 98877632 345558888 99999999999999999999999
Q ss_pred eecccccccceEEEEeCCCCcCcceecccCchHHHHHHHHHHHHHHHHHHhccccCCCCCCCCCCCCccchHHHHHHHhH
Q 040220 81 EFTQPCAESRLSMIVPAKTEESAWRFMKPCTWEMWVVTDAILVNTRFVVWFPEHQRNSEFNGPRKDQIGTALWFNFSSIL 160 (370)
Q Consensus 81 dFS~P~~~~~~~ilv~~~~~~~~~~~l~PF~~~vW~~il~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~w~~~~~~~ 160 (370)
.||.|++.....+++++++...
T Consensus 80 ~~s~p~~~~~~~l~~~~~~~~~---------------------------------------------------------- 101 (227)
T 3tql_A 80 DFTDPYYTNSVSFIADKNTPLT---------------------------------------------------------- 101 (227)
T ss_dssp EECSCSBCCEEEEEEETTSCCC----------------------------------------------------------
T ss_pred ecccceeccceEEEEeCCCCCC----------------------------------------------------------
Confidence 9999999999999999865310
Q ss_pred hccCccceeeeeeccccCccccCcccchhhHHHHHHHHHHHHHHHHHhhcCCccccccccCCCCCeEeeeCChhHHHHHH
Q 040220 161 FAYGKEHVLHFIIMVNWKPIFGGRIDSNLTRLVVVVWLFVVLILTSSYTASPSPMLTVQPLRPNPKVACDRDSFVRNYLQ 240 (370)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~l~~~w~~~~lil~~~Yta~L~s~Lt~~~~~~~~~vg~~~~s~~~~~l~ 240 (370)
+ +.+.+. +.++|+..|+....++.
T Consensus 102 -------------------------~------------------------------~~~dL~-g~~v~~~~g~~~~~~l~ 125 (227)
T 3tql_A 102 -------------------------L------------------------------SKQGLK-GKIIGVQGGTTFDSYLQ 125 (227)
T ss_dssp -------------------------C------------------------------STTTTT-TCEEEEETTSHHHHHHH
T ss_pred -------------------------C------------------------------CHHHhC-CCEEEEEecccHHHHHH
Confidence 0 122233 78899988887766654
Q ss_pred ----------hcCChHHHHHHhhccccccc----chhHHHHhhccc-ceEEcCCCCCcc-----ceeee---CCc-chHH
Q 040220 241 ----------NFGSDYNYQGEFGSNHIAGP----PYEKVFVSQYCR-IYAATTPTYGFG-----GLGFL---SSP-IAAD 296 (370)
Q Consensus 241 ----------~~~~~~~~~~~l~~g~~~a~----~~~~~~~~~~c~-~~~~~~~~~~~~-----~~~~a---~sp-l~~~ 296 (370)
.+.+.++++++|.+|++|+. +...+.+++... .+.+++..+... +++++ ++| +++.
T Consensus 126 ~~~~~~~~~~~~~~~~~~~~~l~~grvDa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 205 (227)
T 3tql_A 126 DSFGNSITIQRYPSEEDALMDLTSGRVDAVVGDTPLIKQWLKQNGRREYVLIGKPVNDPNYFGKGVGIAVKKGNQALLLK 205 (227)
T ss_dssp HHHGGGSEEEEESSHHHHHHHHTTTSSSEEESCHHHHHHHHHHTTCCSEEEEEEECCCGGGCCSCBCCEEETTCHHHHHH
T ss_pred HhccccceEEEcCCHHHHHHHHHcCCcCEEEeChHHHHHHHHhCCCCCEEEecCcccCccccccceEEEEcCCCHHHHHH
Confidence 35678999999999999993 334455555432 255554433332 23454 554 9999
Q ss_pred HHHHHHHhhhcCchhHHHHhhc
Q 040220 297 FSEAILKLSENKKLKSLEYNEK 318 (370)
Q Consensus 297 in~~i~~l~e~G~~~~l~~~w~ 318 (370)
+|++|.++.++|.++++.++||
T Consensus 206 l~~~l~~l~~~g~~~~i~~k~~ 227 (227)
T 3tql_A 206 LNKALAAIKANGVYAAIVQKYF 227 (227)
T ss_dssp HHHHHHHHHHTSHHHHHHHHHC
T ss_pred HHHHHHHHHhCChHHHHHHhhC
Confidence 9999999999999999999997
No 18
>3del_B Arginine binding protein; alpha and beta protein (A/B), periplasmic protein, arginine protein binding, transport protein; 1.92A {Chlamydia trachomatis} SCOP: c.94.1.0
Probab=99.79 E-value=4.6e-19 Score=159.99 Aligned_cols=194 Identities=19% Similarity=0.192 Sum_probs=154.2
Q ss_pred CCCCccceEEeecCCCCCCceEEeeHHHHHHHHh-cCCceEE-EEehhhhhhhhccccccCCceeEEEecccccccccce
Q 040220 2 GTSFGKFVKVKFSDNPYENEYDGFCIELYYESQL-ACKGISI-LFFFLQLMMRIRHEENFLRNYDSVVGDATILADRAKI 79 (370)
Q Consensus 2 ~~~~~Pfv~~~~~~~~~~~~~~G~~idl~~~la~-lg~~~~i-~~~~~~li~~~~~~~L~~g~~Diai~~~tit~eR~~~ 79 (370)
.+++|||.+. +.++ ++.|+++|+++.+++ +|+++++ .+.+..++.+ |.+|++|+++++++.+++|.+.
T Consensus 18 ~~~~~P~~~~--~~~g---~~~G~~~dl~~~i~~~~g~~~~~~~~~~~~~~~~-----l~~g~~D~~~~~~~~~~~r~~~ 87 (242)
T 3del_B 18 NATYPPFEFV--DKRG---EVVGFDIDLAREISNKLGKTLDVREFSFDALILN-----LKQHRIDAVITGMSITPSRLKE 87 (242)
T ss_dssp CSCBTTTBEE--CTTS---CEESHHHHHHHHHHHHHTCEEEEEECCGGGHHHH-----HHTTSSSEECSSBBCCHHHHTT
T ss_pred CCCCCCeeEE--CCCC---CEEEeeHHHHHHHHHHcCCceEEEEcCHHHHHHH-----HhCCCcCEEEecCcCCHHHHhc
Confidence 3579999999 6554 799999999999999 9877663 2345568888 9999999999999999999999
Q ss_pred eeeccccc--ccceEEEEeCCCCcCcceecccCchHHHHHHHHHHHHHHHHHHhccccCCCCCCCCCCCCccchHHHHHH
Q 040220 80 VEFTQPCA--ESRLSMIVPAKTEESAWRFMKPCTWEMWVVTDAILVNTRFVVWFPEHQRNSEFNGPRKDQIGTALWFNFS 157 (370)
Q Consensus 80 vdFS~P~~--~~~~~ilv~~~~~~~~~~~l~PF~~~vW~~il~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~w~~~~ 157 (370)
++| .|++ ..+..++++++....
T Consensus 88 ~~~-~p~~~~~~~~~~~~~~~~~i~------------------------------------------------------- 111 (242)
T 3del_B 88 ILM-IPYYGEEIKHLVLVFKGENKH------------------------------------------------------- 111 (242)
T ss_dssp EEE-EEEEEEEESEEEEEEESCCSC-------------------------------------------------------
T ss_pred ccc-eeeeecCCceEEEEeCCCCCC-------------------------------------------------------
Confidence 999 9999 889999998763210
Q ss_pred HhHhccCccceeeeeeccccCccccCcccchhhHHHHHHHHHHHHHHHHHhhcCCccccccccCCCCCeEeeeCChhHHH
Q 040220 158 SILFAYGKEHVLHFIIMVNWKPIFGGRIDSNLTRLVVVVWLFVVLILTSSYTASPSPMLTVQPLRPNPKVACDRDSFVRN 237 (370)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~l~~~w~~~~lil~~~Yta~L~s~Lt~~~~~~~~~vg~~~~s~~~~ 237 (370)
+.+.+. +.++|+..|+....
T Consensus 112 -----------------------------------------------------------~~~dL~-g~~i~v~~g~~~~~ 131 (242)
T 3del_B 112 -----------------------------------------------------------PLPLTQ-YRSVAVQTGTYQEA 131 (242)
T ss_dssp -----------------------------------------------------------CCCGGG-SSCEEEETTSHHHH
T ss_pred -----------------------------------------------------------CHHHhC-CCEEEEEcCcHHHH
Confidence 011122 67888888887777
Q ss_pred HHH--------hcCChHHHHHHhhccccccc----chhHHHHhhcccceEEcCCCCCccc----eeee---CC-cchHHH
Q 040220 238 YLQ--------NFGSDYNYQGEFGSNHIAGP----PYEKVFVSQYCRIYAATTPTYGFGG----LGFL---SS-PIAADF 297 (370)
Q Consensus 238 ~l~--------~~~~~~~~~~~l~~g~~~a~----~~~~~~~~~~c~~~~~~~~~~~~~~----~~~a---~s-pl~~~i 297 (370)
++. .+.+.++++++|.+|++|+. +...+++++..+ +.+++..+...+ ++++ ++ .+++.+
T Consensus 132 ~l~~~~~~~~~~~~~~~~~~~~L~~g~vDa~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~k~~~~l~~~l 210 (242)
T 3del_B 132 YLQSLSEVHIRSFDSTLEVLMEVMHGKSPVAVLEPSIAQVVLKDFPA-LSTATIDLPEDQWVLGYGIGVASDRPALALKI 210 (242)
T ss_dssp HHHHSTTCCEEEESSHHHHHHHHHTTSSSEEEECHHHHHHHGGGCTT-EEEEEEECCGGGCEEEEEEEEETTCHHHHHHH
T ss_pred HHHhCCCceEEEECCHHHHHHHHHcCCCCEEEecHHHHHHHHHhCCC-eEEecCccCcccccceEEEEEeCCCHHHHHHH
Confidence 765 46788999999999999993 344556666665 777766665666 6666 44 499999
Q ss_pred HHHHHHhhhcCchhHHHHhhcCCCC
Q 040220 298 SEAILKLSENKKLKSLEYNEKELEP 322 (370)
Q Consensus 298 n~~i~~l~e~G~~~~l~~~w~~~~~ 322 (370)
|++|.++.++|.+++|.+||+...+
T Consensus 211 ~~~l~~l~~~g~~~~i~~k~~~~~~ 235 (242)
T 3del_B 211 EAAVQEIRKEGVLAELEQKWGLNNL 235 (242)
T ss_dssp HHHHHHHHHTTHHHHHHHHTTGGGC
T ss_pred HHHHHHHHHcCCHHHHHHHHCCCCC
Confidence 9999999999999999999998753
No 19
>1ii5_A SLR1257 protein; membrane protein; HET: GLU; 1.60A {Synechocystis SP} SCOP: c.94.1.1 PDB: 1iit_A 1iiw_A
Probab=99.78 E-value=2.2e-18 Score=154.00 Aligned_cols=197 Identities=15% Similarity=0.166 Sum_probs=152.5
Q ss_pred CCccceEEeecCCCCCCceEEeeHHHHHHHHh-cCCceEE-EE-ehhhhhhhhccccccCCceeEEEeccccccccc--c
Q 040220 4 SFGKFVKVKFSDNPYENEYDGFCIELYYESQL-ACKGISI-LF-FFLQLMMRIRHEENFLRNYDSVVGDATILADRA--K 78 (370)
Q Consensus 4 ~~~Pfv~~~~~~~~~~~~~~G~~idl~~~la~-lg~~~~i-~~-~~~~li~~~~~~~L~~g~~Diai~~~tit~eR~--~ 78 (370)
++|||.+. +.+ .++++.|+++|+++.+++ +|+++++ .+ .+..++.+ |.+|++|+++++++.+++|. +
T Consensus 12 ~~~P~~~~--~~~-~~g~~~G~~~dl~~~i~~~~g~~~~~~~~~~~~~~~~~-----l~~g~~D~~~~~~~~~~~r~~~~ 83 (233)
T 1ii5_A 12 GNPPFVFY--GEG-KNAAFTGISLDVWRAVAESQKWNSEYVRQNSISAGITA-----VAEGELDILIGPISVTPERAAIE 83 (233)
T ss_dssp CCTTTCEE--C------CEESHHHHHHHHHHHHHTCCEEEEECSCHHHHHHH-----HHTTSCSEEEEEEECCHHHHTST
T ss_pred CCCCeEEE--ecC-CCCCEEEEeHHHHHHHHHHcCCcEEEEEeCCHHHHHHH-----HHCCCcCEEEeeeecCccccccc
Confidence 48999988 421 235899999999999999 9888774 33 45668888 99999999999999999999 9
Q ss_pred eeeecccccccceEEEEeCCCCcCcceecccCchHHHHHHHHHHHHHHHHHHhccccCCCCCCCCCCCCccchHHHHHHH
Q 040220 79 IVEFTQPCAESRLSMIVPAKTEESAWRFMKPCTWEMWVVTDAILVNTRFVVWFPEHQRNSEFNGPRKDQIGTALWFNFSS 158 (370)
Q Consensus 79 ~vdFS~P~~~~~~~ilv~~~~~~~~~~~l~PF~~~vW~~il~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~w~~~~~ 158 (370)
.++||.|++.....+++++++....
T Consensus 84 ~~~~s~p~~~~~~~~~~~~~~~~~i------------------------------------------------------- 108 (233)
T 1ii5_A 84 GITFTQPYFSSGIGLLIPGTATPLF------------------------------------------------------- 108 (233)
T ss_dssp TEEECCCCEEEEEEEEEEGGGTTTC-------------------------------------------------------
T ss_pred eeEEccceeecCeEEEEECCCCCCC-------------------------------------------------------
Confidence 9999999999999999997652000
Q ss_pred hHhccCccceeeeeeccccCccccCcccchhhHHHHHHHHHHHHHHHHHhhcCCccccccccCCCCCeEeeeCChhHHHH
Q 040220 159 ILFAYGKEHVLHFIIMVNWKPIFGGRIDSNLTRLVVVVWLFVVLILTSSYTASPSPMLTVQPLRPNPKVACDRDSFVRNY 238 (370)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~l~~~w~~~~lil~~~Yta~L~s~Lt~~~~~~~~~vg~~~~s~~~~~ 238 (370)
.+++.+. +.++|+..++....+
T Consensus 109 ---------------------------------------------------------~~~~dL~-g~~v~~~~g~~~~~~ 130 (233)
T 1ii5_A 109 ---------------------------------------------------------RSVGDLK-NKEVAVVRDTTAVDW 130 (233)
T ss_dssp ---------------------------------------------------------SSGGGGT-TCEEEEETTSHHHHH
T ss_pred ---------------------------------------------------------CCHHHhC-CCeEEEECCccHHHH
Confidence 0122233 778898888877776
Q ss_pred HH-------hcCChHHHHHHhhccccccc----chhHHHHhhcc-cceEEcCCCCCccceeee---CCcchHHHHHHHHH
Q 040220 239 LQ-------NFGSDYNYQGEFGSNHIAGP----PYEKVFVSQYC-RIYAATTPTYGFGGLGFL---SSPIAADFSEAILK 303 (370)
Q Consensus 239 l~-------~~~~~~~~~~~l~~g~~~a~----~~~~~~~~~~c-~~~~~~~~~~~~~~~~~a---~spl~~~in~~i~~ 303 (370)
+. .+.+.++++++|.+|++|+. ....+.+++.. ..+.+++..+...+++++ ++|+.+.+|++|.+
T Consensus 131 l~~~~~~~~~~~~~~~~~~~l~~g~vDa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~~~~~l~~ 210 (233)
T 1ii5_A 131 ANFYQADVRETNNLTAAITLLQKKQVEAVMFDRPALIYYTRQNPNLNLEVTEIRVSLEPYGFVLKENSPLQKTINVEMLN 210 (233)
T ss_dssp HHHTTCEEEEESSHHHHHHHHHTTSCSEEEEEHHHHHHHHHHCGGGCEEECSCCSEEEEEEEEEETTCTTHHHHHHHHHH
T ss_pred HHHcCCCeEEcCCHHHHHHHHHcCCccEEEeCHHHHHHHHHhCCCCcEEEeCccccccceEEEEcCCchHHHHHHHHHHH
Confidence 65 46788999999999999993 33345555443 247777766666677776 77899999999999
Q ss_pred hhhcCchhHHHHhhcCCC
Q 040220 304 LSENKKLKSLEYNEKELE 321 (370)
Q Consensus 304 l~e~G~~~~l~~~w~~~~ 321 (370)
|.++|.++++.++|+...
T Consensus 211 l~~~g~~~~i~~k~~~~~ 228 (233)
T 1ii5_A 211 LLYSRVIAEFTERWLGPG 228 (233)
T ss_dssp HHHTTHHHHHHHHHHC--
T ss_pred HHhCCcHHHHHHHHcCCC
Confidence 999999999999999764
No 20
>1lst_A Lysine, arginine, ornithine-binding protein; amino-acid binding protein; HET: LYS; 1.80A {Salmonella typhimurium} SCOP: c.94.1.1 PDB: 2lao_A 1lag_E* 1lah_E 1laf_E 1hsl_A* 1hpb_P*
Probab=99.77 E-value=1.8e-18 Score=155.53 Aligned_cols=196 Identities=16% Similarity=0.219 Sum_probs=148.7
Q ss_pred CCCCccceEEeecCCCCCCceEEeeHHHHHHHHh-cCCceEEE-EehhhhhhhhccccccCCceeEEEecccccccccce
Q 040220 2 GTSFGKFVKVKFSDNPYENEYDGFCIELYYESQL-ACKGISIL-FFFLQLMMRIRHEENFLRNYDSVVGDATILADRAKI 79 (370)
Q Consensus 2 ~~~~~Pfv~~~~~~~~~~~~~~G~~idl~~~la~-lg~~~~i~-~~~~~li~~~~~~~L~~g~~Diai~~~tit~eR~~~ 79 (370)
.++||||.+. +.++ ++.|+++|+++++++ +|+++++. +.+..++.+ |.+|++|+++++++.+++|.+.
T Consensus 11 ~~~~~P~~~~--~~~g---~~~G~~~dl~~~i~~~~g~~~~~~~~~~~~~~~~-----l~~g~~D~~~~~~~~t~~r~~~ 80 (239)
T 1lst_A 11 DTTYAPFSSK--DAKG---EFIGFDIDLGNEMCKRMQVKCTWVASDFDALIPS-----LKAKKIDAIISSLSITDKRQQE 80 (239)
T ss_dssp CSCBTTTBEE--CTTC---CEESHHHHHHHHHHHHHTCEEEEEECCGGGHHHH-----HHTTSCSEECSSCBCCHHHHHH
T ss_pred CCCcCCeeEE--CCCC---CEeeEHHHHHHHHHHHHCCeEEEEeCCHHHHHHH-----HhCCCCCEEEECcCcCHHHhhc
Confidence 3679999999 6554 799999999999999 98776632 345568888 9999999999999999999999
Q ss_pred eeecccccccceEEEEeCCCCcCcceecccCchHHHHHHHHHHHHHHHHHHhccccCCCCCCCCCCCCccchHHHHHHHh
Q 040220 80 VEFTQPCAESRLSMIVPAKTEESAWRFMKPCTWEMWVVTDAILVNTRFVVWFPEHQRNSEFNGPRKDQIGTALWFNFSSI 159 (370)
Q Consensus 80 vdFS~P~~~~~~~ilv~~~~~~~~~~~l~PF~~~vW~~il~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~w~~~~~~ 159 (370)
++||.|++.....++++++++..
T Consensus 81 ~~~s~p~~~~~~~l~~~~~~~~~--------------------------------------------------------- 103 (239)
T 1lst_A 81 IAFSDKLYAADSRLIAAKGSPIQ--------------------------------------------------------- 103 (239)
T ss_dssp CEECSCSBCCCEEEEEETTCCCC---------------------------------------------------------
T ss_pred eeecccceeCceEEEEeCCCCCC---------------------------------------------------------
Confidence 99999999999999999865310
Q ss_pred HhccCccceeeeeeccccCccccCcccchhhHHHHHHHHHHHHHHHHHhhcCCccccccccCCCCCeEeeeCChhHHHHH
Q 040220 160 LFAYGKEHVLHFIIMVNWKPIFGGRIDSNLTRLVVVVWLFVVLILTSSYTASPSPMLTVQPLRPNPKVACDRDSFVRNYL 239 (370)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~l~~~w~~~~lil~~~Yta~L~s~Lt~~~~~~~~~vg~~~~s~~~~~l 239 (370)
+ +.+.+. +.++|+..|+....++
T Consensus 104 --------------------------~------------------------------~~~dL~-g~~v~~~~g~~~~~~l 126 (239)
T 1lst_A 104 --------------------------P------------------------------TLESLK-GKHVGVLQGSTQEAYA 126 (239)
T ss_dssp --------------------------S------------------------------SHHHHT-TCEEEEETTSHHHHHH
T ss_pred --------------------------C------------------------------CHHHhC-CCEEEEEcCccHHHHH
Confidence 0 011122 6778888877666554
Q ss_pred H-----------hcCChHHHHHHhhcccccccchhH----H-HHhhc-ccceEEcCCCCCcc-----ceeee---CCc-c
Q 040220 240 Q-----------NFGSDYNYQGEFGSNHIAGPPYEK----V-FVSQY-CRIYAATTPTYGFG-----GLGFL---SSP-I 293 (370)
Q Consensus 240 ~-----------~~~~~~~~~~~l~~g~~~a~~~~~----~-~~~~~-c~~~~~~~~~~~~~-----~~~~a---~sp-l 293 (370)
+ .+.+.++++++|.+|++|+..... + ++.+. ...+.+++..+... +++++ ++| +
T Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~l~~G~vDa~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~k~~~~l 206 (239)
T 1lst_A 127 NDNWRTKGVDVVAYANQDLIYSDLTAGRLDAALQDEVAASEGFLKQPAGKEYAFAGPSVKDKKYFGDGTGVGLRKDDTEL 206 (239)
T ss_dssp HHHTGGGTCEEEEESSHHHHHHHHHTTSCSEEEEEHHHHHHHTTTSGGGTTEEECSSCBCCHHHHCSSBCCEECTTCHHH
T ss_pred HHhcccCCCeEEEcCCHHHHHHHHHcCCCCEEEeCcHHHHHHHHhccCCCceEEeccccccccccCcceEEEEeCCCHHH
Confidence 3 356789999999999999932221 1 22222 22366776555432 45555 555 9
Q ss_pred hHHHHHHHHHhhhcCchhHHHHhhcCCC
Q 040220 294 AADFSEAILKLSENKKLKSLEYNEKELE 321 (370)
Q Consensus 294 ~~~in~~i~~l~e~G~~~~l~~~w~~~~ 321 (370)
.+.+|++|.++.++|.++++.++|++..
T Consensus 207 ~~~~~~~l~~l~~~G~~~~i~~k~~~~~ 234 (239)
T 1lst_A 207 KAAFDKALTELRQDGTYDKMAKKYFDFN 234 (239)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHTTCSSC
T ss_pred HHHHHHHHHHHHHCccHHHHHHHHcCCC
Confidence 9999999999999999999999999864
No 21
>3h7m_A Sensor protein; histidine kinase sensor domain, kinase, phosphoprotein, transferase; 2.40A {Geobacter sulfurreducens} SCOP: c.94.1.0
Probab=99.77 E-value=1.9e-18 Score=154.50 Aligned_cols=195 Identities=13% Similarity=0.150 Sum_probs=153.1
Q ss_pred CCCccceEEeecCCCCCCceEEeeHHHHHHHHh-cCCceEEE-EehhhhhhhhccccccCCceeEEEeccccccccccee
Q 040220 3 TSFGKFVKVKFSDNPYENEYDGFCIELYYESQL-ACKGISIL-FFFLQLMMRIRHEENFLRNYDSVVGDATILADRAKIV 80 (370)
Q Consensus 3 ~~~~Pfv~~~~~~~~~~~~~~G~~idl~~~la~-lg~~~~i~-~~~~~li~~~~~~~L~~g~~Diai~~~tit~eR~~~v 80 (370)
+++|||.+. +.++ ++.|+++|+++++++ +|+++++. ..+..++.+ |.+|++|++ ++++.+++|.+.+
T Consensus 19 ~~~~P~~~~--~~~g---~~~G~~~dl~~~i~~~~g~~~~~~~~~~~~~~~~-----l~~g~~D~~-~~~~~~~~r~~~~ 87 (234)
T 3h7m_A 19 RDYPPYEFI--DQNG---KPAGYNVELTRAIAEVMGMTVEFRLGAWSEMFSA-----LKSGRVDVL-QGISWSEKRARQI 87 (234)
T ss_dssp TEETTTEEE--CTTS---CEESHHHHHHHHHHHHHTCCEEEEEECGGGHHHH-----HHTTSSSEE-EEEECCHHHHTTE
T ss_pred CCCCCeEEE--CCCC---CEeeeEHHHHHHHHHHcCCceEEEeCCHHHHHHH-----HhCCCeeEE-EeccCCHhHHhhc
Confidence 578999999 6554 799999999999999 98887743 345568888 999999994 7899999999999
Q ss_pred eecccccccceEEEEeCCCC-cCcceecccCchHHHHHHHHHHHHHHHHHHhccccCCCCCCCCCCCCccchHHHHHHHh
Q 040220 81 EFTQPCAESRLSMIVPAKTE-ESAWRFMKPCTWEMWVVTDAILVNTRFVVWFPEHQRNSEFNGPRKDQIGTALWFNFSSI 159 (370)
Q Consensus 81 dFS~P~~~~~~~ilv~~~~~-~~~~~~l~PF~~~vW~~il~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~w~~~~~~ 159 (370)
.||.|++.....+++++++. ..
T Consensus 88 ~~s~p~~~~~~~~~~~~~~~~~~--------------------------------------------------------- 110 (234)
T 3h7m_A 88 DFTPPHTIVYHAIFARRDSPPAA--------------------------------------------------------- 110 (234)
T ss_dssp EEEEEEEEEEEEEEEESSSCCCS---------------------------------------------------------
T ss_pred CCCccccccceEEEEECCCCCCC---------------------------------------------------------
Confidence 99999999999999998653 10
Q ss_pred HhccCccceeeeeeccccCccccCcccchhhHHHHHHHHHHHHHHHHHhhcCCccccccccCCCCCeEeeeCChhHHHHH
Q 040220 160 LFAYGKEHVLHFIIMVNWKPIFGGRIDSNLTRLVVVVWLFVVLILTSSYTASPSPMLTVQPLRPNPKVACDRDSFVRNYL 239 (370)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~l~~~w~~~~lil~~~Yta~L~s~Lt~~~~~~~~~vg~~~~s~~~~~l 239 (370)
+++.+. +.++|+..++....++
T Consensus 111 ---------------------------------------------------------~~~dL~-g~~i~~~~g~~~~~~l 132 (234)
T 3h7m_A 111 ---------------------------------------------------------GLEDLR-GRKVALHRDGIMHEYL 132 (234)
T ss_dssp ---------------------------------------------------------SGGGGT-TSCEEEETTSHHHHHH
T ss_pred ---------------------------------------------------------CHHHhC-CCEEEEEeCchHHHHH
Confidence 122233 7788888888777776
Q ss_pred H---------hcCChHHHHHHhhccccccc----chhHHHHhhc-ccceEEcCCCCCccceeee---CC-cchHHHHHHH
Q 040220 240 Q---------NFGSDYNYQGEFGSNHIAGP----PYEKVFVSQY-CRIYAATTPTYGFGGLGFL---SS-PIAADFSEAI 301 (370)
Q Consensus 240 ~---------~~~~~~~~~~~l~~g~~~a~----~~~~~~~~~~-c~~~~~~~~~~~~~~~~~a---~s-pl~~~in~~i 301 (370)
. .+.+.++++++|.+|++|+. ....+.+++. ...+.+++..+...+++++ ++ .+++.+|++|
T Consensus 133 ~~~~~~~~~~~~~~~~~~~~~l~~g~vDa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l 212 (234)
T 3h7m_A 133 AERGYGKDLVLTPTPADALRLLAAGGCDYAVVAMVPGMYIIRENRLTNLVPVARSIAAQRYGYAVRQGDAELLARFSEGL 212 (234)
T ss_dssp HTTTCGGGEEEESSHHHHHHHHHTTSSSEEEEEHHHHHHHHHHTTCTTEEEEEEEEEEEEEEEEEETTCHHHHHHHHHHH
T ss_pred HhcCCCceEEEeCCHHHHHHHHHcCCceEEEeccHHHHHHHHhcCCCceEEeccccCCCceEEEEeCCCHHHHHHHHHHH
Confidence 5 36788999999999999993 2334444443 2346666655656667776 44 5999999999
Q ss_pred HHhhhcCchhHHHHhhcCCCCC
Q 040220 302 LKLSENKKLKSLEYNEKELEPP 323 (370)
Q Consensus 302 ~~l~e~G~~~~l~~~w~~~~~~ 323 (370)
.+|.++|.++++.++|++..+|
T Consensus 213 ~~l~~~g~~~~i~~k~~~~~~p 234 (234)
T 3h7m_A 213 AILRKTGQYEAIRAKWLGVLEP 234 (234)
T ss_dssp HHHHHHTHHHHHHHHSTTCCCC
T ss_pred HHHHHcCcHHHHHHHhccccCC
Confidence 9999999999999999987543
No 22
>1wdn_A GLNBP, glutamine binding protein; closed form, complex, peptide, complex (binding protein/peptide); 1.94A {Escherichia coli} SCOP: c.94.1.1 PDB: 1ggg_A
Probab=99.77 E-value=3.2e-18 Score=152.00 Aligned_cols=194 Identities=21% Similarity=0.224 Sum_probs=152.2
Q ss_pred CCCccceEEeecCCCCCCceEEeeHHHHHHHHh-cCCceEEE-EehhhhhhhhccccccCCceeEEEeccccccccccee
Q 040220 3 TSFGKFVKVKFSDNPYENEYDGFCIELYYESQL-ACKGISIL-FFFLQLMMRIRHEENFLRNYDSVVGDATILADRAKIV 80 (370)
Q Consensus 3 ~~~~Pfv~~~~~~~~~~~~~~G~~idl~~~la~-lg~~~~i~-~~~~~li~~~~~~~L~~g~~Diai~~~tit~eR~~~v 80 (370)
+++|||.+. ++ +++.|+++|+++.+++ +|+++++. +.+..++.+ |.+|++|+++++++.+++|.+.+
T Consensus 11 ~~~~P~~~~--~~----g~~~G~~~dl~~~~~~~~g~~~~~~~~~~~~~~~~-----l~~g~~D~~~~~~~~~~~r~~~~ 79 (226)
T 1wdn_A 11 TAFVPFEFK--QG----DLYVGFDVDLWAAIAKELKLDYELKPMDFSGIIPA-----LQTKNVDLALAGITITDERKKAI 79 (226)
T ss_dssp SSBTTTBEE--ET----TEEESHHHHHHHHHHHHHTCCEEEEEECGGGHHHH-----HHTTSSSEEEEEEECCHHHHTTS
T ss_pred CCCCCeeEe--cC----CcEEEeeHHHHHHHHHHhCCEEEEEECCHHHHHHH-----HhCCCCCEEEEcCcCCHHHhCcc
Confidence 579999998 52 3899999999999999 98887743 346668888 99999999999999999999999
Q ss_pred eecccccccceEEEEeCCCC-cCcceecccCchHHHHHHHHHHHHHHHHHHhccccCCCCCCCCCCCCccchHHHHHHHh
Q 040220 81 EFTQPCAESRLSMIVPAKTE-ESAWRFMKPCTWEMWVVTDAILVNTRFVVWFPEHQRNSEFNGPRKDQIGTALWFNFSSI 159 (370)
Q Consensus 81 dFS~P~~~~~~~ilv~~~~~-~~~~~~l~PF~~~vW~~il~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~w~~~~~~ 159 (370)
+||.|++.....++++++++ ..
T Consensus 80 ~~~~p~~~~~~~~~~~~~~~~i~--------------------------------------------------------- 102 (226)
T 1wdn_A 80 DFSDGYYKSGLLVMVKANNNDVK--------------------------------------------------------- 102 (226)
T ss_dssp EECSCCEEEEEEEEEETTCCSCS---------------------------------------------------------
T ss_pred ccccchhcCceEEEEeCCCCCCC---------------------------------------------------------
Confidence 99999999999999997652 00
Q ss_pred HhccCccceeeeeeccccCccccCcccchhhHHHHHHHHHHHHHHHHHhhcCCccccccccCCCCCeEeeeCChhHHHHH
Q 040220 160 LFAYGKEHVLHFIIMVNWKPIFGGRIDSNLTRLVVVVWLFVVLILTSSYTASPSPMLTVQPLRPNPKVACDRDSFVRNYL 239 (370)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~l~~~w~~~~lil~~~Yta~L~s~Lt~~~~~~~~~vg~~~~s~~~~~l 239 (370)
+.+.+. +.++|+..++....++
T Consensus 103 ---------------------------------------------------------~~~dL~-g~~i~~~~g~~~~~~l 124 (226)
T 1wdn_A 103 ---------------------------------------------------------SVKDLD-GKVVAVKSGTGSVDYA 124 (226)
T ss_dssp ---------------------------------------------------------SSTTTT-TCEEEEETTSHHHHHH
T ss_pred ---------------------------------------------------------CHHHhC-CCEEEEEcCCcHHHHH
Confidence 122233 6788888887776666
Q ss_pred H---------hcCChHHHHHHhhccccccc----chhHHHHhhcc-cceEEcCCCCCccceeee---CC-cchHHHHHHH
Q 040220 240 Q---------NFGSDYNYQGEFGSNHIAGP----PYEKVFVSQYC-RIYAATTPTYGFGGLGFL---SS-PIAADFSEAI 301 (370)
Q Consensus 240 ~---------~~~~~~~~~~~l~~g~~~a~----~~~~~~~~~~c-~~~~~~~~~~~~~~~~~a---~s-pl~~~in~~i 301 (370)
+ .+.+.++++++|.+|++|+. ....+.+++.. ..+.+++.......++++ ++ ++.+.+|++|
T Consensus 125 ~~~~~~~~~~~~~~~~~~~~~l~~g~vDa~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~k~~~~l~~~~~~~l 204 (226)
T 1wdn_A 125 KANIKTKDLRQFPNIDNAYMELGTNRADAVLHDTPNILYFIKTAGNGQFKAVGDSLEAQQYGIAFPKGSDELRDKVNGAL 204 (226)
T ss_dssp HHHCCCSEEEEESSHHHHHHHHHTTSCSEEEEEHHHHHHHHHTTTTTTEEEEEEEEEEEEEEEEECTTCHHHHHHHHHHH
T ss_pred HHhCCCceEEEeCCHHHHHHHHHcCCcCEEEeCcHHHHHHHHhCCCCceEEecCCcccCceEEEEeCCCHHHHHHHHHHH
Confidence 5 35678999999999999993 23344444442 236666555555566666 54 6999999999
Q ss_pred HHhhhcCchhHHHHhhcCCCC
Q 040220 302 LKLSENKKLKSLEYNEKELEP 322 (370)
Q Consensus 302 ~~l~e~G~~~~l~~~w~~~~~ 322 (370)
.++.++|.++++.++|++..+
T Consensus 205 ~~l~~~g~~~~i~~k~~~~~p 225 (226)
T 1wdn_A 205 KTLRENGTYNEIYKKWFGTEP 225 (226)
T ss_dssp HHHHHTSHHHHHHHHHHSSCC
T ss_pred HHHHhCChHHHHHHHHcCCCC
Confidence 999999999999999998764
No 23
>2y7i_A STM4351; arginine-binding protein; HET: ARG; 1.90A {Salmonella enterica subsp}
Probab=99.76 E-value=6.5e-18 Score=150.71 Aligned_cols=191 Identities=17% Similarity=0.229 Sum_probs=148.9
Q ss_pred CCCccceEEeecCCCCCCceEEeeHHHHHHHHh-cCCceEEE-EehhhhhhhhccccccCCceeEEEeccccccccccee
Q 040220 3 TSFGKFVKVKFSDNPYENEYDGFCIELYYESQL-ACKGISIL-FFFLQLMMRIRHEENFLRNYDSVVGDATILADRAKIV 80 (370)
Q Consensus 3 ~~~~Pfv~~~~~~~~~~~~~~G~~idl~~~la~-lg~~~~i~-~~~~~li~~~~~~~L~~g~~Diai~~~tit~eR~~~v 80 (370)
+++|||.+. +.++ ++.|+++|+++++++ +|+++++. +.+..++.+ |.+|++|+++++++.+++|.+.+
T Consensus 14 ~~~~P~~~~--~~~g---~~~G~~~dl~~~i~~~~g~~~~~~~~~~~~~~~~-----l~~g~~D~~~~~~~~~~~r~~~~ 83 (229)
T 2y7i_A 14 ATYAPYEFV--DADN---KIVGFDIDVANAVCKEMQAECSFTNQSFDSLIPS-----LRFKKFDAVIAGMDMTPKREQQV 83 (229)
T ss_dssp CCBTTTBEE--CTTS---CEESHHHHHHHHHHHHTTCEEEEEECCGGGHHHH-----HHTTSCSEECSSCBCCHHHHTTS
T ss_pred CCcCCceEE--CCCC---CCcceeHHHHHHHHHHhCCeEEEEEcCHHHHHHH-----HhCCCceEEEecCccCHHHhcce
Confidence 579999998 6544 799999999999999 98776632 345558888 99999999998899999999999
Q ss_pred eeccccccc-ceEEEEeCCCCcCcceecccCchHHHHHHHHHHHHHHHHHHhccccCCCCCCCCCCCCccchHHHHHHHh
Q 040220 81 EFTQPCAES-RLSMIVPAKTEESAWRFMKPCTWEMWVVTDAILVNTRFVVWFPEHQRNSEFNGPRKDQIGTALWFNFSSI 159 (370)
Q Consensus 81 dFS~P~~~~-~~~ilv~~~~~~~~~~~l~PF~~~vW~~il~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~w~~~~~~ 159 (370)
.||.|++.. ...+++++++ ..
T Consensus 84 ~~s~p~~~~~~~~~~~~~~~-~~--------------------------------------------------------- 105 (229)
T 2y7i_A 84 SFSQPYYEGLSAVVVTRKGA-YH--------------------------------------------------------- 105 (229)
T ss_dssp EECSCSBCCCCEEEEEETTS-CC---------------------------------------------------------
T ss_pred eeccccccCCcEEEEEeCCC-CC---------------------------------------------------------
Confidence 999999999 9999998754 10
Q ss_pred HhccCccceeeeeeccccCccccCcccchhhHHHHHHHHHHHHHHHHHhhcCCccccccccCCCCCeEeeeCChhHHHHH
Q 040220 160 LFAYGKEHVLHFIIMVNWKPIFGGRIDSNLTRLVVVVWLFVVLILTSSYTASPSPMLTVQPLRPNPKVACDRDSFVRNYL 239 (370)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~l~~~w~~~~lil~~~Yta~L~s~Lt~~~~~~~~~vg~~~~s~~~~~l 239 (370)
+.+.+. +.++|+..++....++
T Consensus 106 ---------------------------------------------------------~~~dL~-g~~v~~~~g~~~~~~l 127 (229)
T 2y7i_A 106 ---------------------------------------------------------TFADLK-GKKVGLENGTTHQRYL 127 (229)
T ss_dssp ---------------------------------------------------------STGGGT-TCEEEEETTSHHHHHH
T ss_pred ---------------------------------------------------------CHHHHC-CCEEEEecCCcHHHHH
Confidence 011222 6788888887776665
Q ss_pred H---------hcCChHHHHHHhhccccccc----chhHHHHhhcccceEEcCCCCCc-----cceeee---CCc-chHHH
Q 040220 240 Q---------NFGSDYNYQGEFGSNHIAGP----PYEKVFVSQYCRIYAATTPTYGF-----GGLGFL---SSP-IAADF 297 (370)
Q Consensus 240 ~---------~~~~~~~~~~~l~~g~~~a~----~~~~~~~~~~c~~~~~~~~~~~~-----~~~~~a---~sp-l~~~i 297 (370)
+ .+.+.++++++|.+|++|+. +...+.+++..+ +.+++..+.. .+++++ ++| +++.+
T Consensus 128 ~~~~~~~~~~~~~~~~~~~~~l~~grvDa~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l 206 (229)
T 2y7i_A 128 QDKQQAITPVAYDSYLNAFTDLKNNRLEGVFGDVAAIGKWLKNNPD-YAIMDERASDPDYYGKGLGIAVRKDNDALLQEI 206 (229)
T ss_dssp HHHCTTSEEEEESCHHHHHHHHHTTSCSEEEEEHHHHHHHHTTCTT-EEECSCCBCCTTTSCCCBCCEECTTCHHHHHHH
T ss_pred HHhCCCCeEEecCCHHHHHHHHHcCCcCEEEechHHHHHHHHhCCC-eEEeccccccccccccceEEEEeCCCHHHHHHH
Confidence 5 35678999999999999993 334455555554 7777655422 245555 554 99999
Q ss_pred HHHHHHhhhcCchhHHHHhhcCC
Q 040220 298 SEAILKLSENKKLKSLEYNEKEL 320 (370)
Q Consensus 298 n~~i~~l~e~G~~~~l~~~w~~~ 320 (370)
|++|.++.++|.++++.++|++.
T Consensus 207 ~~~l~~l~~~g~~~~i~~k~~~~ 229 (229)
T 2y7i_A 207 NAALDKVKASPEYAQMQEKWFTQ 229 (229)
T ss_dssp HHHHHHHHTSHHHHHHHHHHHCC
T ss_pred HHHHHHHHhCChHHHHHHHHcCC
Confidence 99999999999999999999863
No 24
>4eq9_A ABC transporter substrate-binding protein-amino A transport; structural genomics, niaid; HET: GSH; 1.40A {Streptococcus pneumoniae}
Probab=99.76 E-value=6e-18 Score=152.61 Aligned_cols=193 Identities=10% Similarity=0.026 Sum_probs=147.9
Q ss_pred CCCccceEEeecCCCCCCceEEeeHHHHHHHHh-cC-CceEE-EEehhhhhhhhccccccCCceeEEEecccccccccce
Q 040220 3 TSFGKFVKVKFSDNPYENEYDGFCIELYYESQL-AC-KGISI-LFFFLQLMMRIRHEENFLRNYDSVVGDATILADRAKI 79 (370)
Q Consensus 3 ~~~~Pfv~~~~~~~~~~~~~~G~~idl~~~la~-lg-~~~~i-~~~~~~li~~~~~~~L~~g~~Diai~~~tit~eR~~~ 79 (370)
+++|||.+. . ++ ++.|+++||++++++ +| +++++ .+.+..++.+ |.+|++|+++++++.+++|.+.
T Consensus 16 ~~~~P~~~~--~-~g---~~~G~~~dl~~~i~~~~g~~~~~~~~~~~~~~~~~-----l~~g~~D~~~~~~~~~~~r~~~ 84 (246)
T 4eq9_A 16 GSPRPFIYE--E-NG---ELTGYEIEVVRAIFKDSDKYDVKFEKTEWSGVFAG-----LDADRYNMAVNNLSYTKERAEK 84 (246)
T ss_dssp CCSTTTSEE--E-TT---EEESHHHHHHHHHHTTCSSEEEEEEECCHHHHHHH-----HHTTSCSEECSSCCCCHHHHHH
T ss_pred CCcCCeEEc--C-CC---CCcccHHHHHHHHHHHcCCceEEEEeCCHHHHHHH-----HhCCCcCEEecccccChhhhhc
Confidence 579999985 2 33 799999999999999 98 66663 2345568888 9999999999999999999999
Q ss_pred eeecccccccceEEEEeCCC-CcCcceecccCchHHHHHHHHHHHHHHHHHHhccccCCCCCCCCCCCCccchHHHHHHH
Q 040220 80 VEFTQPCAESRLSMIVPAKT-EESAWRFMKPCTWEMWVVTDAILVNTRFVVWFPEHQRNSEFNGPRKDQIGTALWFNFSS 158 (370)
Q Consensus 80 vdFS~P~~~~~~~ilv~~~~-~~~~~~~l~PF~~~vW~~il~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~w~~~~~ 158 (370)
++||.|++.....+++++.+ ...
T Consensus 85 ~~~s~p~~~~~~~~~~~~~~~~i~-------------------------------------------------------- 108 (246)
T 4eq9_A 85 YLYAAPIAQNPNVLVVKKDDSSIK-------------------------------------------------------- 108 (246)
T ss_dssp EEECCCCEECCEEEEEETTCCSCS--------------------------------------------------------
T ss_pred eeeccceecCceEEEEECCCCCCC--------------------------------------------------------
Confidence 99999999999999999733 110
Q ss_pred hHhccCccceeeeeeccccCccccCcccchhhHHHHHHHHHHHHHHHHHhhcCCccccccccCCCCCeEeeeCChhHHHH
Q 040220 159 ILFAYGKEHVLHFIIMVNWKPIFGGRIDSNLTRLVVVVWLFVVLILTSSYTASPSPMLTVQPLRPNPKVACDRDSFVRNY 238 (370)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~l~~~w~~~~lil~~~Yta~L~s~Lt~~~~~~~~~vg~~~~s~~~~~ 238 (370)
+++.+. +.++|+..|+....+
T Consensus 109 ----------------------------------------------------------~~~dL~-g~~i~~~~g~~~~~~ 129 (246)
T 4eq9_A 109 ----------------------------------------------------------SLDDIG-GKSTEVVQATTSAKQ 129 (246)
T ss_dssp ----------------------------------------------------------SGGGCT-TCEEEECTTCHHHHH
T ss_pred ----------------------------------------------------------CHHHhC-CCEEEEecCccHHHH
Confidence 122233 778888888766655
Q ss_pred HHh---------------cCChHHHHHHhhccccccc----chhHHHHhhcc-cceEEcCCCCCccc-eeee---CC-cc
Q 040220 239 LQN---------------FGSDYNYQGEFGSNHIAGP----PYEKVFVSQYC-RIYAATTPTYGFGG-LGFL---SS-PI 293 (370)
Q Consensus 239 l~~---------------~~~~~~~~~~l~~g~~~a~----~~~~~~~~~~c-~~~~~~~~~~~~~~-~~~a---~s-pl 293 (370)
+.. ..+.++++++|.+|++|+. +...+++++.. +.+.+++......+ ++++ ++ .+
T Consensus 130 l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~g~vDa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~l 209 (246)
T 4eq9_A 130 LEAYNAEHTDNPTILNYTKADFQQIMVRLSDGQFDYKIFDKIGVETVIKNQGLDNLKVIELPSDQQPYVYPLLAQGQDEL 209 (246)
T ss_dssp HHHHHHHCTTSCCEEEECCCCHHHHHHHHHTTSSSEEEEEHHHHHHHHHHHTCTTEEEEECCCSSCCEECCEEETTCHHH
T ss_pred HHHHHhhCCCcceEEEecCCCHHHHHHHHHcCCceEEEecHHHHHHHHHhCCCCCceEecCcCCCCCcEEEEEcCCCHHH
Confidence 441 1377899999999999993 33445555443 34777765554443 5555 44 59
Q ss_pred hHHHHHHHHHhhhcCchhHHHHhhcCCC
Q 040220 294 AADFSEAILKLSENKKLKSLEYNEKELE 321 (370)
Q Consensus 294 ~~~in~~i~~l~e~G~~~~l~~~w~~~~ 321 (370)
++.+|++|.++.++|.++++.++|++..
T Consensus 210 ~~~ln~~l~~l~~~g~~~~i~~k~~~~~ 237 (246)
T 4eq9_A 210 KSFVDKRIKELYKDGTLEKLSKQFFGDT 237 (246)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHSSC
T ss_pred HHHHHHHHHHHHhCCcHHHHHHHhcCCC
Confidence 9999999999999999999999999875
No 25
>2iee_A ORF2, probable ABC transporter extracellular-binding protein YCKB; SR574, NESG, X-RAY, structural genomics, PSI-2; 2.20A {Bacillus subtilis}
Probab=99.75 E-value=3.3e-18 Score=158.14 Aligned_cols=197 Identities=13% Similarity=0.103 Sum_probs=150.4
Q ss_pred CCCccceEEeecCCCCCCceEEeeHHHHHHHHh-cCCceEEE-EehhhhhhhhccccccCCceeEEEeccccccccccee
Q 040220 3 TSFGKFVKVKFSDNPYENEYDGFCIELYYESQL-ACKGISIL-FFFLQLMMRIRHEENFLRNYDSVVGDATILADRAKIV 80 (370)
Q Consensus 3 ~~~~Pfv~~~~~~~~~~~~~~G~~idl~~~la~-lg~~~~i~-~~~~~li~~~~~~~L~~g~~Diai~~~tit~eR~~~v 80 (370)
++||||.+. +.+++.+++.|+++|+++++++ +|+++++. +.+..++.+ |.+|++|+++++++.+++|.+.+
T Consensus 29 ~~~pP~~~~--~~~~~~g~~~G~~~dl~~~i~~~~g~~v~~~~~~~~~~~~~-----l~~G~~D~~~~~~~~t~~r~~~~ 101 (271)
T 2iee_A 29 GTLYPTSYH--DTDSGSDKLTGYEVEVVREAAKRLGLKVEFKEMGIDGMLTA-----VNSGQVDAAANDIDVTKDREEKF 101 (271)
T ss_dssp SCBTTTBEE--ETTTTCCEEECHHHHHHHHHHHHTTCEEEEEECCSTTHHHH-----HHHTSSSEECSSCBCCHHHHTTE
T ss_pred CCCCCeeEe--CCCCCCCCceeeHHHHHHHHHHHcCCeEEEEECCHHHHHHH-----HHCCCcCEEEeCCcCChhhccce
Confidence 579999999 6663234899999999999999 98776632 345558888 99999999999999999999999
Q ss_pred eecccccccceEEEEeCCCCcCcceecccCchHHHHHHHHHHHHHHHHHHhccccCCCCCCCCCCCCccchHHHHHHHhH
Q 040220 81 EFTQPCAESRLSMIVPAKTEESAWRFMKPCTWEMWVVTDAILVNTRFVVWFPEHQRNSEFNGPRKDQIGTALWFNFSSIL 160 (370)
Q Consensus 81 dFS~P~~~~~~~ilv~~~~~~~~~~~l~PF~~~vW~~il~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~w~~~~~~~ 160 (370)
+||.||+.....+++++++....
T Consensus 102 ~fs~p~~~~~~~l~~~~~~~~~i--------------------------------------------------------- 124 (271)
T 2iee_A 102 AFSTPYKYSYGTAIVRKDDLSGI--------------------------------------------------------- 124 (271)
T ss_dssp EECCCSEEEEEEEEECTTTGGGC---------------------------------------------------------
T ss_pred EEeecceeCCeEEEEECCCCCCC---------------------------------------------------------
Confidence 99999999999999987652000
Q ss_pred hccCccceeeeeeccccCccccCcccchhhHHHHHHHHHHHHHHHHHhhcCCccccccccCCCCCeEeeeCChhHHHHHH
Q 040220 161 FAYGKEHVLHFIIMVNWKPIFGGRIDSNLTRLVVVVWLFVVLILTSSYTASPSPMLTVQPLRPNPKVACDRDSFVRNYLQ 240 (370)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~l~~~w~~~~lil~~~Yta~L~s~Lt~~~~~~~~~vg~~~~s~~~~~l~ 240 (370)
-+++.+. +.++|+..|+....+++
T Consensus 125 -------------------------------------------------------~~~~dL~-g~~i~v~~g~~~~~~l~ 148 (271)
T 2iee_A 125 -------------------------------------------------------KTLKDLK-GKKAAGAATTVYMEVAR 148 (271)
T ss_dssp -------------------------------------------------------SSGGGGT-TCEEESCTTSHHHHHHH
T ss_pred -------------------------------------------------------CCHHHhC-CCEEEEeCCccHHHHHH
Confidence 0122233 77888888887777665
Q ss_pred -------hcCChHHH--HHHhhccccccc---chhHHHHh-hcc-cceEEc-CCCCCccceeee---CC-cchHHHHHHH
Q 040220 241 -------NFGSDYNY--QGEFGSNHIAGP---PYEKVFVS-QYC-RIYAAT-TPTYGFGGLGFL---SS-PIAADFSEAI 301 (370)
Q Consensus 241 -------~~~~~~~~--~~~l~~g~~~a~---~~~~~~~~-~~c-~~~~~~-~~~~~~~~~~~a---~s-pl~~~in~~i 301 (370)
.+.+..++ +++|.+|++|+. ....+++. +.. ..+.++ +..+...+++++ ++ .+++.+|++|
T Consensus 149 ~~~~~~~~~~~~~~~~l~~~L~~GrvD~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~l~~~ln~al 228 (271)
T 2iee_A 149 KYGAKEVIYDNATNEQYLKDVANGRTDVILNDYYLQTLALAAFPDLNITIHPDIKYMPNKQALVMKKSNAALQKKMNEAL 228 (271)
T ss_dssp HTTCEEEECSSCCHHHHHHHHHHTSSCEEEEEHHHHHHHHHHCTTSSCEECSSCCEEEEEECCEEETTCHHHHHHHHHHH
T ss_pred HcCCceEEeCChhhHHHHHHHHcCCccEEeccHHHHHHHHHhCCCCceEEecCCCcccceEEEEEcCCCHHHHHHHHHHH
Confidence 35677888 999999999962 12223333 333 246676 555555566665 55 4999999999
Q ss_pred HHhhhcCchhHHHHhhcC
Q 040220 302 LKLSENKKLKSLEYNEKE 319 (370)
Q Consensus 302 ~~l~e~G~~~~l~~~w~~ 319 (370)
.+|.++|.++++.+||+.
T Consensus 229 ~~l~~~G~~~~i~~k~~~ 246 (271)
T 2iee_A 229 KEMSKDGSLTKLSKQFFN 246 (271)
T ss_dssp HHHHHHTHHHHHHHHHTT
T ss_pred HHHHHCCCHHHHHHHhCC
Confidence 999999999999999998
No 26
>4dz1_A DALS D-alanine transporter; D-alanine binding, periplasmic, transport protein; 1.90A {Salmonella enterica} PDB: 3r39_A 4f3s_A
Probab=99.74 E-value=6.7e-18 Score=154.87 Aligned_cols=196 Identities=11% Similarity=0.123 Sum_probs=147.4
Q ss_pred CCCccceEEeecCCCCCCceEEeeHHHHHHHHh-cCCceEE-EEehhhhhhhhccccccCCceeEEEeccccccccccee
Q 040220 3 TSFGKFVKVKFSDNPYENEYDGFCIELYYESQL-ACKGISI-LFFFLQLMMRIRHEENFLRNYDSVVGDATILADRAKIV 80 (370)
Q Consensus 3 ~~~~Pfv~~~~~~~~~~~~~~G~~idl~~~la~-lg~~~~i-~~~~~~li~~~~~~~L~~g~~Diai~~~tit~eR~~~v 80 (370)
++||||.+. +.++ ++.|+++|+++.+++ +|+++++ .+.+..++.+ |.+|++|+++++++.+++|.+.+
T Consensus 37 ~~~~P~~~~--~~~g---~~~G~~~dl~~~i~~~~g~~~~~~~~~~~~~~~~-----l~~g~~D~~~~~~~~t~~r~~~~ 106 (259)
T 4dz1_A 37 PASPPMLFK--SADG---KLQGIDLELFSSYCQSRHCKLNITEYAWDGMLGA-----VASGQADVAFSGISITDKRKKVI 106 (259)
T ss_dssp CCBTTTBEE--CTTC---CEESHHHHHHHHHHHHHTCEEEEEECCHHHHHHH-----HHHTSSSEEEEEEECCHHHHTTE
T ss_pred CCCCCeEEE--CCCC---CEEEeHHHHHHHHHHHhCCeEEEEEcCHHHHHHH-----HhCCCCCEEEECCcCCHHHhhcc
Confidence 578999999 6444 799999999999999 9877763 2345668888 99999999999999999999999
Q ss_pred eecccccccceEEEEeCCCCcCcceecccCchHHHHHHHHHHHHHHHHHHhccccCCCCCCCCCCCCccchHHHHHHHhH
Q 040220 81 EFTQPCAESRLSMIVPAKTEESAWRFMKPCTWEMWVVTDAILVNTRFVVWFPEHQRNSEFNGPRKDQIGTALWFNFSSIL 160 (370)
Q Consensus 81 dFS~P~~~~~~~ilv~~~~~~~~~~~l~PF~~~vW~~il~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~w~~~~~~~ 160 (370)
+||.||+..+..+++++++....
T Consensus 107 ~fs~p~~~~~~~~~~~~~~~~~i--------------------------------------------------------- 129 (259)
T 4dz1_A 107 DFSEPYYINSFYLVSMANHKITL--------------------------------------------------------- 129 (259)
T ss_dssp EECCCSEEEEEEEEEETTSCCCC---------------------------------------------------------
T ss_pred ccccchhhCceEEEEEcCCCCCC---------------------------------------------------------
Confidence 99999999999999987653110
Q ss_pred hccCccceeeeeeccccCccccCcccchhhHHHHHHHHHHHHHHHHHhhcCCccccccccCCCCCeEeeeCChhHHHHHH
Q 040220 161 FAYGKEHVLHFIIMVNWKPIFGGRIDSNLTRLVVVVWLFVVLILTSSYTASPSPMLTVQPLRPNPKVACDRDSFVRNYLQ 240 (370)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~l~~~w~~~~lil~~~Yta~L~s~Lt~~~~~~~~~vg~~~~s~~~~~l~ 240 (370)
+ +.+.+. +.++|+..|+....+++
T Consensus 130 -------------------------~------------------------------~~~dL~-g~~v~v~~g~~~~~~l~ 153 (259)
T 4dz1_A 130 -------------------------N------------------------------NLNELN-KYSIGYPRGMAYSDLIK 153 (259)
T ss_dssp -------------------------C------------------------------SGGGGG-GSCEEEETTSTHHHHHH
T ss_pred -------------------------C------------------------------CHHHhC-CCEEEEeCCcHHHHHHH
Confidence 0 011222 66788877776655543
Q ss_pred ---------------hcCChHHHHHHhhcccccccc----hhHHHHhhcccceEEcCCCCCccceeee---CCcchHHHH
Q 040220 241 ---------------NFGSDYNYQGEFGSNHIAGPP----YEKVFVSQYCRIYAATTPTYGFGGLGFL---SSPIAADFS 298 (370)
Q Consensus 241 ---------------~~~~~~~~~~~l~~g~~~a~~----~~~~~~~~~c~~~~~~~~~~~~~~~~~a---~spl~~~in 298 (370)
.+.+.++++++|.+|++|+.. ...++.++....+..........+++++ ++++++.+|
T Consensus 154 ~~~~~~g~~~~~~~~~~~~~~~~~~~l~~G~vDa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~ln 233 (259)
T 4dz1_A 154 NDLEPKGYYSLSKVKLYPTYNETMADLKNGNLDLAFIEEPVYFTFKNKKKMPIESRYVFKNVDQLGIAFKKGSPVRDDFN 233 (259)
T ss_dssp HHTGGGTSCCGGGCEEESSHHHHHHHHHHTSCSEEEEEHHHHHHHHHTSCCCEEEEEEEEEEEEEEEEEETTCHHHHHHH
T ss_pred HhcccccccccceeEecCCHHHHHHHHHcCCCCEEEecHHHHHHHhccCCCceEeecccCCCceEEEEEeCChHHHHHHH
Confidence 246788999999999999932 2333444333225555444445667776 569999999
Q ss_pred HHHHHhhhcCchhHHHHhhcCCCC
Q 040220 299 EAILKLSENKKLKSLEYNEKELEP 322 (370)
Q Consensus 299 ~~i~~l~e~G~~~~l~~~w~~~~~ 322 (370)
++|.+ ..+|.++++.++|.+...
T Consensus 234 ~~l~~-~g~~~l~~~~~~~~~~~~ 256 (259)
T 4dz1_A 234 LWLKE-QGPQKISGIVDSWMKHHH 256 (259)
T ss_dssp HHHHH-HCHHHHHHHHHHHTCC--
T ss_pred HHHHh-CCCeehHHHHHHHHhhcc
Confidence 99999 888999999999998753
No 27
>3mpk_A Virulence sensor protein BVGS; venus flytrap, sensor domain, signaling protein; 2.04A {Bordetella pertussis} PDB: 3mpl_A
Probab=99.74 E-value=1.1e-17 Score=154.30 Aligned_cols=192 Identities=13% Similarity=0.144 Sum_probs=148.8
Q ss_pred CCCccceEEeecCCCCCCceEEeeHHHHHHHHh-cCCceEEE-E-ehhhhhhhhccccccCCceeEEEecccccccccce
Q 040220 3 TSFGKFVKVKFSDNPYENEYDGFCIELYYESQL-ACKGISIL-F-FFLQLMMRIRHEENFLRNYDSVVGDATILADRAKI 79 (370)
Q Consensus 3 ~~~~Pfv~~~~~~~~~~~~~~G~~idl~~~la~-lg~~~~i~-~-~~~~li~~~~~~~L~~g~~Diai~~~tit~eR~~~ 79 (370)
++||||.+. |.++ ++.|+++||++++++ +|+++++. + .+..++.+ |.+|++|++. +++.+++|.+.
T Consensus 40 ~~~~P~~~~--~~~g---~~~G~~~dl~~~i~~~lg~~~~~~~~~~~~~~~~~-----l~~G~~D~~~-~~~~t~~r~~~ 108 (267)
T 3mpk_A 40 NLFAPFTLF--RTDE---QFGGISAAVLQLLQLRTGLDFEIIGVDTVEELIAK-----LRSGEADMAG-ALFVNSARESF 108 (267)
T ss_dssp TEETTTEEC--CTTC---CCBSHHHHHHHHHHHHHCCEEEEEEESSHHHHHHH-----HHHTSCSEEE-EEECCGGGTTT
T ss_pred CCCCCeEEE--CCCC---cEeeeHHHHHHHHHHHHCCeEEEEecCCHHHHHHH-----HHCCCccEEe-cccCChhhhcc
Confidence 468999998 6554 799999999999999 99887754 3 26678888 9999999965 89999999999
Q ss_pred eeecccccccceEEEEeCCCCcCcceecccCchHHHHHHHHHHHHHHHHHHhccccCCCCCCCCCCCCccchHHHHHHHh
Q 040220 80 VEFTQPCAESRLSMIVPAKTEESAWRFMKPCTWEMWVVTDAILVNTRFVVWFPEHQRNSEFNGPRKDQIGTALWFNFSSI 159 (370)
Q Consensus 80 vdFS~P~~~~~~~ilv~~~~~~~~~~~l~PF~~~vW~~il~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~w~~~~~~ 159 (370)
+.||.||+..+..+++++++..
T Consensus 109 ~~fs~p~~~~~~~l~~~~~~~~---------------------------------------------------------- 130 (267)
T 3mpk_A 109 LSFSRPYVRNGMVIVTRQDPDA---------------------------------------------------------- 130 (267)
T ss_dssp EEECSCSEEECEEEEEESSTTS----------------------------------------------------------
T ss_pred eEechhhccCceEEEEECCCCC----------------------------------------------------------
Confidence 9999999999999999976420
Q ss_pred HhccCccceeeeeeccccCccccCcccchhhHHHHHHHHHHHHHHHHHhhcCCccccccccCCCCCeEeeeCChhHHHHH
Q 040220 160 LFAYGKEHVLHFIIMVNWKPIFGGRIDSNLTRLVVVVWLFVVLILTSSYTASPSPMLTVQPLRPNPKVACDRDSFVRNYL 239 (370)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~l~~~w~~~~lil~~~Yta~L~s~Lt~~~~~~~~~vg~~~~s~~~~~l 239 (370)
++ +++.+. +.++|+..|+....++
T Consensus 131 -------------------------i~------------------------------~~~dL~-g~~i~v~~g~~~~~~l 154 (267)
T 3mpk_A 131 -------------------------PV------------------------------DADHLD-GRTVALVRNSAAIPLL 154 (267)
T ss_dssp -------------------------CS------------------------------SGGGCT-TCEEEEETTCTHHHHH
T ss_pred -------------------------CC------------------------------CHHHHC-CCEEEEeCCchhHHHH
Confidence 00 122333 7889999888777766
Q ss_pred H---------hcCChHHHHHHhhccccccc----chhHHHHhhc-ccceEEcCCCC-Cccceeee---CCc-chHHHHHH
Q 040220 240 Q---------NFGSDYNYQGEFGSNHIAGP----PYEKVFVSQY-CRIYAATTPTY-GFGGLGFL---SSP-IAADFSEA 300 (370)
Q Consensus 240 ~---------~~~~~~~~~~~l~~g~~~a~----~~~~~~~~~~-c~~~~~~~~~~-~~~~~~~a---~sp-l~~~in~~ 300 (370)
. .+.+.++++++|.+|++|+. +...+.+++. .+.+.+.+... .+.+++++ ++| +.+.+|++
T Consensus 155 ~~~~~~~~~~~~~~~~~~l~~L~~GrvDa~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~k~~~~l~~~ln~~ 234 (267)
T 3mpk_A 155 QRRYPQAKVVTADNPSEAMLMVANGQADAVVQTQISASYYVNRYFAGKLRIASALDLPPAEIALATTRGQTELMSILNKA 234 (267)
T ss_dssp HHHCTTSEEEEESSHHHHHHHHHHTSCSEEEEEHHHHHHHHHHHCTTTEEEEEECSSCCEEEEEEEETTCHHHHHHHHHH
T ss_pred HHhCCCcEEEEeCCHHHHHHHHHcCCCCEEEecHHHHHHHHHhcCCCceEEEeccCCCceeEEEEEcCCCHHHHHHHHHH
Confidence 5 46789999999999999993 3344555553 33466665432 34566666 554 99999999
Q ss_pred HHHhhhcCchhHHHHhhcCC
Q 040220 301 ILKLSENKKLKSLEYNEKEL 320 (370)
Q Consensus 301 i~~l~e~G~~~~l~~~w~~~ 320 (370)
|.++.++| ++++.++|++.
T Consensus 235 l~~l~~~~-~~~i~~kw~~~ 253 (267)
T 3mpk_A 235 LYSISNDE-LASIISRWRGS 253 (267)
T ss_dssp HHTSCHHH-HHHHHHTTC--
T ss_pred HHhCCHHH-HHHHHHhhccC
Confidence 99999997 99999999987
No 28
>3qax_A Probable ABC transporter arginine-binding protein; periplasmic, transport PR; HET: ARG; 2.00A {Chlamydophila pneumoniae} PDB: 3g41_A* 3n26_A*
Probab=99.73 E-value=2.6e-17 Score=150.33 Aligned_cols=199 Identities=19% Similarity=0.193 Sum_probs=155.6
Q ss_pred CCCccceEEeecCCCCCCceEEeeHHHHHHHHh-cCCceEEE-EehhhhhhhhccccccCCceeEEEeccccccccccee
Q 040220 3 TSFGKFVKVKFSDNPYENEYDGFCIELYYESQL-ACKGISIL-FFFLQLMMRIRHEENFLRNYDSVVGDATILADRAKIV 80 (370)
Q Consensus 3 ~~~~Pfv~~~~~~~~~~~~~~G~~idl~~~la~-lg~~~~i~-~~~~~li~~~~~~~L~~g~~Diai~~~tit~eR~~~v 80 (370)
+++|||.+. +.++ ++.|+++|+++.+++ +|+++++. +.+..++.+ +.+|++|+++++++.+++|.+.+
T Consensus 39 ~~~~P~~~~--~~~g---~~~G~~~dl~~~i~~~~g~~~~~~~~~~~~~~~~-----l~~g~~D~~~~~~~~~~~r~~~~ 108 (268)
T 3qax_A 39 ATYPPFEYV--DAQG---EVVGFDIDLAKAISEKLGKQLEVREFAFDALILN-----LKKHRIDAILAGMSITPSRQKEI 108 (268)
T ss_dssp SCBTTTBEE--CTTS---CEESHHHHHHHHHHHHHTCEEEEEECCGGGHHHH-----HHHTSSSEECSCCBCCHHHHTTS
T ss_pred CCCCCceEE--CCCC---CEEEEEHHHHHHHHHHhCCeEEEEecCHHHHHHH-----HhCCCccEEeecCccCHhHhcce
Confidence 578999998 6544 799999999999999 98776632 345558888 99999999999999999999999
Q ss_pred eeccccc--ccceEEEEeCCCC-cCcceecccCchHHHHHHHHHHHHHHHHHHhccccCCCCCCCCCCCCccchHHHHHH
Q 040220 81 EFTQPCA--ESRLSMIVPAKTE-ESAWRFMKPCTWEMWVVTDAILVNTRFVVWFPEHQRNSEFNGPRKDQIGTALWFNFS 157 (370)
Q Consensus 81 dFS~P~~--~~~~~ilv~~~~~-~~~~~~l~PF~~~vW~~il~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~w~~~~ 157 (370)
+| .|++ ..+..+++++++. .+
T Consensus 109 ~~-~p~~~~~~~~~~~~~~~~~~i~------------------------------------------------------- 132 (268)
T 3qax_A 109 AL-LPYYGDEVQELMVVSKRSLETP------------------------------------------------------- 132 (268)
T ss_dssp EE-EEEECCCBCEEEEEEETTSCSC-------------------------------------------------------
T ss_pred ee-ecceecccceEEEEECCCCCCC-------------------------------------------------------
Confidence 99 9999 8899999987631 10
Q ss_pred HhHhccCccceeeeeeccccCccccCcccchhhHHHHHHHHHHHHHHHHHhhcCCccccccccCCCCCeEeeeCChhHHH
Q 040220 158 SILFAYGKEHVLHFIIMVNWKPIFGGRIDSNLTRLVVVVWLFVVLILTSSYTASPSPMLTVQPLRPNPKVACDRDSFVRN 237 (370)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~l~~~w~~~~lil~~~Yta~L~s~Lt~~~~~~~~~vg~~~~s~~~~ 237 (370)
+.+.+. +.++|+..|+....
T Consensus 133 -----------------------------------------------------------~~~dL~-g~~i~~~~g~~~~~ 152 (268)
T 3qax_A 133 -----------------------------------------------------------VLPLTQ-YSSVAVQTGTYQEH 152 (268)
T ss_dssp -----------------------------------------------------------CCCGGG-SSCEEEETTSHHHH
T ss_pred -----------------------------------------------------------CHHHhC-CCEEEEecCcHHHH
Confidence 011222 67888888887777
Q ss_pred HHH--------hcCChHHHHHHhhccccccc----chhHHHHhhcccceEEcCCCCCccc----eeee---CC-cchHHH
Q 040220 238 YLQ--------NFGSDYNYQGEFGSNHIAGP----PYEKVFVSQYCRIYAATTPTYGFGG----LGFL---SS-PIAADF 297 (370)
Q Consensus 238 ~l~--------~~~~~~~~~~~l~~g~~~a~----~~~~~~~~~~c~~~~~~~~~~~~~~----~~~a---~s-pl~~~i 297 (370)
++. .+.+.++++++|.+|++|+. +...+..++..+ +.+++..+.... ++++ ++ .+++.+
T Consensus 153 ~l~~~~~~~~~~~~~~~~~~~~l~~G~vDa~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~k~~~~l~~~l 231 (268)
T 3qax_A 153 YLLSQPGICVRSFDSTLEVIMEVRYGKSPVAVLEPSVGRVVLKDFPN-LVATRLELPPECWVLGCGLGVAKDRPEEIQTI 231 (268)
T ss_dssp HHHTSTTCCEEEESCHHHHHHHHHTTSSSEEEECHHHHHHHGGGCTT-EEEEEEECCGGGCBCCEEEEECTTCHHHHHHH
T ss_pred HHHhCCCceEEecCCHHHHHHHHHcCCCCEEEecHHHHHHHHHhCCC-cEEecCccCcccccccEEEEEeCCCHHHHHHH
Confidence 765 45778999999999999993 344455666555 666666666666 6776 45 499999
Q ss_pred HHHHHHhhhcCchhHHHHhhcCCCCCcceec
Q 040220 298 SEAILKLSENKKLKSLEYNEKELEPPGELYR 328 (370)
Q Consensus 298 n~~i~~l~e~G~~~~l~~~w~~~~~~l~l~~ 328 (370)
|++|.++.++|.++++.++|+.....+.-..
T Consensus 232 ~~~l~~l~~~g~~~~i~~k~~~~~~~~~~~~ 262 (268)
T 3qax_A 232 QQAITDLKSEGVIQSLTKKWQLSEVAYEAAQ 262 (268)
T ss_dssp HHHHHHHHHTTHHHHHHHHTTCSCCBCCCCC
T ss_pred HHHHHHHHHCCcHHHHHHHHcCCcccccccc
Confidence 9999999999999999999998875544333
No 29
>4i62_A Amino acid ABC transporter, periplasmic amino ACI protein, putative; center for structural genomics of infectious diseases (csgid national institute of allergy and infectious diseases (NIAI niaid; HET: ARG; 1.05A {Streptococcus pneumoniae}
Probab=99.72 E-value=3.2e-17 Score=149.80 Aligned_cols=197 Identities=18% Similarity=0.215 Sum_probs=149.4
Q ss_pred CCCccceEEe-ecCCCCCCceEEeeHHHHHHHHh-cCCceEEE-EehhhhhhhhccccccCCceeEEEecccccccccce
Q 040220 3 TSFGKFVKVK-FSDNPYENEYDGFCIELYYESQL-ACKGISIL-FFFLQLMMRIRHEENFLRNYDSVVGDATILADRAKI 79 (370)
Q Consensus 3 ~~~~Pfv~~~-~~~~~~~~~~~G~~idl~~~la~-lg~~~~i~-~~~~~li~~~~~~~L~~g~~Diai~~~tit~eR~~~ 79 (370)
+++|||.+.. .+.+ +++.|+++|+++.+++ +|+++++. +.+..++.+ +.+|++|+++++++.+++|.+.
T Consensus 47 ~~~~P~~~~~~~~~~---g~~~G~~~dl~~~~~~~~g~~~~~~~~~~~~~~~~-----l~~g~~D~~~~~~~~~~~r~~~ 118 (269)
T 4i62_A 47 PDFAPFEYQKVVDGK---NQIVGSDIELAKAIATELGVELELSPMSFDNVLAS-----VQSGKADLAISGVSKTDERSKV 118 (269)
T ss_dssp SCBTTTBEEEEETTE---EEEESHHHHHHHHHHHHHTCEEEEEECCHHHHHHH-----HHTTSCSEECSSCBCCHHHHTT
T ss_pred CCCCCceeecccCCC---CcEeeecHHHHHHHHHHHCCceEEEEcCHHHHHHH-----HhCCCccEEecCCcCCHhHhhc
Confidence 5789999931 0433 3799999999999999 98776632 345558888 9999999999999999999999
Q ss_pred eeecccccccceEEEEeCCCCcCcceecccCchHHHHHHHHHHHHHHHHHHhccccCCCCCCCCCCCCccchHHHHHHHh
Q 040220 80 VEFTQPCAESRLSMIVPAKTEESAWRFMKPCTWEMWVVTDAILVNTRFVVWFPEHQRNSEFNGPRKDQIGTALWFNFSSI 159 (370)
Q Consensus 80 vdFS~P~~~~~~~ilv~~~~~~~~~~~l~PF~~~vW~~il~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~w~~~~~~ 159 (370)
+.||.|++.....+++++++....
T Consensus 119 ~~~s~p~~~~~~~~~~~~~~~~~i-------------------------------------------------------- 142 (269)
T 4i62_A 119 FDFSTPYYTAKNKLIVKKSDLATY-------------------------------------------------------- 142 (269)
T ss_dssp EEECSCCEECCEEEEEEGGGTTTC--------------------------------------------------------
T ss_pred eecccchhhcceEEEEECCccccc--------------------------------------------------------
Confidence 999999999999999998642100
Q ss_pred HhccCccceeeeeeccccCccccCcccchhhHHHHHHHHHHHHHHHHHhhcCCccccccccCCCCCeEeeeCChhHHHHH
Q 040220 160 LFAYGKEHVLHFIIMVNWKPIFGGRIDSNLTRLVVVVWLFVVLILTSSYTASPSPMLTVQPLRPNPKVACDRDSFVRNYL 239 (370)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~l~~~w~~~~lil~~~Yta~L~s~Lt~~~~~~~~~vg~~~~s~~~~~l 239 (370)
+ +.+.+. +.++|+..|+....++
T Consensus 143 --------------------------~------------------------------~~~dL~-g~~i~~~~g~~~~~~l 165 (269)
T 4i62_A 143 --------------------------Q------------------------------SVNDLA-QKKVGAQKGSIQETMA 165 (269)
T ss_dssp --------------------------S------------------------------SGGGGC--CEEEEETTSHHHHHH
T ss_pred --------------------------c------------------------------CHHHhC-CCeEEEecCchHHHHH
Confidence 0 122233 7889998888777766
Q ss_pred H---------hcCChHHHHHHhhccccccc----chhHHHHhhcccceEEcCCCCC---ccceeee---CC-cchHHHHH
Q 040220 240 Q---------NFGSDYNYQGEFGSNHIAGP----PYEKVFVSQYCRIYAATTPTYG---FGGLGFL---SS-PIAADFSE 299 (370)
Q Consensus 240 ~---------~~~~~~~~~~~l~~g~~~a~----~~~~~~~~~~c~~~~~~~~~~~---~~~~~~a---~s-pl~~~in~ 299 (370)
. .+.+.++++++|.+|++|+. +...+.++++.+ +.+....+. ..+++++ ++ .+.+.+|+
T Consensus 166 ~~~~~~~~~~~~~~~~~~~~~l~~g~vDa~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ 244 (269)
T 4i62_A 166 KDLLQNSSLVSLPKNGNLITDLKSGQVDAVIFEEPVAKGFVENNPD-LAIADLNFEKEQDDSYAVAMKKDSKELKEAVDK 244 (269)
T ss_dssp HHHCTTSEEEEESCHHHHHHHHHTTSSSEEEEEHHHHHHHHHHCTT-EEECSCCCCC-CCCEECCEEESSCHHHHHHHHH
T ss_pred HHhCCCCcEEecCCHHHHHHHHHcCCCCEEEeChHHHHHHHHhCCC-CeEEeeccCCCcccceEEEEeCCCHHHHHHHHH
Confidence 5 45788999999999999993 334455555554 445443333 3455555 55 49999999
Q ss_pred HHHHhhhcCchhHHHHhhcCCC
Q 040220 300 AILKLSENKKLKSLEYNEKELE 321 (370)
Q Consensus 300 ~i~~l~e~G~~~~l~~~w~~~~ 321 (370)
+|.++.++|.++++.++|++..
T Consensus 245 ~l~~l~~~g~~~~i~~k~~~~~ 266 (269)
T 4i62_A 245 TIQKLKESGELDKLIEDAFKAS 266 (269)
T ss_dssp HHHHHHHTTHHHHHHHHHHHHT
T ss_pred HHHHHHhCChHHHHHHHHhCCc
Confidence 9999999999999999998653
No 30
>2yln_A Putative ABC transporter, periplasmic binding Pro amino acid; transport protein, solute-BIND protein; HET: CYS GOL; 1.12A {Neisseria gonorrhoeae} PDB: 3zsf_A
Probab=99.71 E-value=5.3e-17 Score=151.30 Aligned_cols=194 Identities=12% Similarity=0.080 Sum_probs=152.4
Q ss_pred CCCccceEEeecCCCCCCceEEeeHHHHHHHHh-cCCceEE-EEehhhhhhhhccccccCCceeEEEecccc-cccccce
Q 040220 3 TSFGKFVKVKFSDNPYENEYDGFCIELYYESQL-ACKGISI-LFFFLQLMMRIRHEENFLRNYDSVVGDATI-LADRAKI 79 (370)
Q Consensus 3 ~~~~Pfv~~~~~~~~~~~~~~G~~idl~~~la~-lg~~~~i-~~~~~~li~~~~~~~L~~g~~Diai~~~ti-t~eR~~~ 79 (370)
++||||.+. +.++ ++.|+.+|+++.+++ +|+++++ .+.+..++.+ |.+|++|+++++++. +++|.+.
T Consensus 65 ~~~~P~~~~--~~~g---~~~G~~~dl~~~i~~~~G~~v~~~~~~~~~~~~~-----l~~G~~D~~~~~~~~~t~~r~~~ 134 (283)
T 2yln_A 65 GTYAPFTYH--DKDG---KLTGYDVEVTRAVAEKLGVKVEFKETQWDSMMAG-----LKAGRFDVVANQVGLTSPERQAT 134 (283)
T ss_dssp SEETTTEEE--CTTS---CEESHHHHHHHHHHHHHTCEEEEEECCGGGHHHH-----HHHTSCSEECSSCCCCSHHHHHH
T ss_pred CCCCCeeEE--CCCC---CEeeehHHHHHHHHHHcCCceEEEECCHHHHHHH-----HHCCCcCEEEecCccCChhhhcc
Confidence 358999999 6444 799999999999999 9887763 3446668888 999999999988988 9999999
Q ss_pred eeecccccccceEEEEeCCCCcCcceecccCchHHHHHHHHHHHHHHHHHHhccccCCCCCCCCCCCCccchHHHHHHHh
Q 040220 80 VEFTQPCAESRLSMIVPAKTEESAWRFMKPCTWEMWVVTDAILVNTRFVVWFPEHQRNSEFNGPRKDQIGTALWFNFSSI 159 (370)
Q Consensus 80 vdFS~P~~~~~~~ilv~~~~~~~~~~~l~PF~~~vW~~il~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~w~~~~~~ 159 (370)
++|+.||+.....+++++++...
T Consensus 135 ~~~~~p~~~~~~~l~~~~~~~i~--------------------------------------------------------- 157 (283)
T 2yln_A 135 FDKSEPYSWSGAVLVAHNDSNIK--------------------------------------------------------- 157 (283)
T ss_dssp EEECSCSEEECEEEEEETTCSCC---------------------------------------------------------
T ss_pred eEeccCeeeecEEEEEECCCCCC---------------------------------------------------------
Confidence 99999999999999999865210
Q ss_pred HhccCccceeeeeeccccCccccCcccchhhHHHHHHHHHHHHHHHHHhhcCCccccccccCCCCCeEeeeCChhHHHHH
Q 040220 160 LFAYGKEHVLHFIIMVNWKPIFGGRIDSNLTRLVVVVWLFVVLILTSSYTASPSPMLTVQPLRPNPKVACDRDSFVRNYL 239 (370)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~l~~~w~~~~lil~~~Yta~L~s~Lt~~~~~~~~~vg~~~~s~~~~~l 239 (370)
+++.+. +.++|+..++....++
T Consensus 158 ---------------------------------------------------------s~~dL~-G~~v~v~~g~~~~~~l 179 (283)
T 2yln_A 158 ---------------------------------------------------------SIADIK-GVKTAQSLTSNYGEKA 179 (283)
T ss_dssp ---------------------------------------------------------SGGGCT-TSEEEECTTSHHHHHH
T ss_pred ---------------------------------------------------------CHHHhC-CCEEEEecCchHHHHH
Confidence 122233 7788888887777666
Q ss_pred H-------hcCChHHHHHHhhccccccc----chhHHHHhhccc-ceEEcC-CCCC-ccceeee---CC-cchHHHHHHH
Q 040220 240 Q-------NFGSDYNYQGEFGSNHIAGP----PYEKVFVSQYCR-IYAATT-PTYG-FGGLGFL---SS-PIAADFSEAI 301 (370)
Q Consensus 240 ~-------~~~~~~~~~~~l~~g~~~a~----~~~~~~~~~~c~-~~~~~~-~~~~-~~~~~~a---~s-pl~~~in~~i 301 (370)
+ .+.+..+++++|.+|++|+. +...+++++... .+.+++ ..+. ...++++ ++ .+++.+|++|
T Consensus 180 ~~~~~~~~~~~~~~~~~~~l~~g~vDa~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~~~k~~~~l~~~i~~al 259 (283)
T 2yln_A 180 KAAGAQLVPVDGLAQSLTLIEQKRADATLNDELAVLDYLKKNPNAGVKIVWSAPADEKVGSGLIVNKGNDEAVAKFSTAI 259 (283)
T ss_dssp HHTTCEEEECSSHHHHHHHHHTTSCCEEEEEHHHHHHHHHHSTTSSEEEEEECCGGGCEEECCEEESSCHHHHHHHHHHH
T ss_pred HHcCCeEEEeCCHHHHHHHHHcCCCCEEEecHHHHHHHHHhCCCCcEEEccCcccCCcccEEEEEeCCCHHHHHHHHHHH
Confidence 5 35678899999999999993 334444555432 377776 5665 5566666 44 5899999999
Q ss_pred HHhhhcCchhHHHHhhcCCC
Q 040220 302 LKLSENKKLKSLEYNEKELE 321 (370)
Q Consensus 302 ~~l~e~G~~~~l~~~w~~~~ 321 (370)
.++.++|.++++.++|++..
T Consensus 260 ~~l~~~g~~~~i~~k~~~~~ 279 (283)
T 2yln_A 260 NELKADGTLKKLGEQFFGKD 279 (283)
T ss_dssp HHHHHTTHHHHHHHHHHSSC
T ss_pred HHHHHCCcHHHHHHHHcCCC
Confidence 99999999999999999765
No 31
>2vha_A Periplasmic binding transport protein; periplasmic binding protein, ligand binding, ultrahigh resolution; HET: GLU; 1.00A {Shigella flexneri} PDB: 2ia4_A*
Probab=99.71 E-value=6.6e-17 Score=150.17 Aligned_cols=196 Identities=9% Similarity=0.001 Sum_probs=149.2
Q ss_pred CCCccceEEeecCCCCCCceEEeeHHHHHHHHh-c----C---CceEE-EEehhhhhhhhccccccCCceeEEEeccccc
Q 040220 3 TSFGKFVKVKFSDNPYENEYDGFCIELYYESQL-A----C---KGISI-LFFFLQLMMRIRHEENFLRNYDSVVGDATIL 73 (370)
Q Consensus 3 ~~~~Pfv~~~~~~~~~~~~~~G~~idl~~~la~-l----g---~~~~i-~~~~~~li~~~~~~~L~~g~~Diai~~~tit 73 (370)
+++|||.+. +.++ ++.|+++|+++++++ + | +++++ .+.+..++.+ |.+|++|+++++++.+
T Consensus 25 ~~~~P~~~~--~~~g---~~~G~~~dl~~~ia~~l~~~~G~~~~~v~~~~~~~~~~~~~-----l~~g~~D~~~~~~~~t 94 (287)
T 2vha_A 25 ESSVPFSYY--DNQQ---KVVGYSQDYSNAIVEAVKKKLNKPDLQVKLIPITSQNRIPL-----LQNGTFDFECGSTTNN 94 (287)
T ss_dssp SEETTTEEE--CSSS---CEESHHHHHHHHHHHHHHHHTTCTTCEEEEEECCTTTHHHH-----HHTTSCSEECSSCBCC
T ss_pred CCCCCceEE--CCCC---CcccccHHHHHHHHHHHHHhcCCCCceEEEEECCHHHHHHH-----HHCCCeeEEeccccCC
Confidence 468999999 6544 799999999999986 5 5 45442 2234458888 9999999999999999
Q ss_pred ccccceeeecccccccceEEEEeCCCCcCcceecccCchHHHHHHHHHHHHHHHHHHhccccCCCCCCCCCCCCccchHH
Q 040220 74 ADRAKIVEFTQPCAESRLSMIVPAKTEESAWRFMKPCTWEMWVVTDAILVNTRFVVWFPEHQRNSEFNGPRKDQIGTALW 153 (370)
Q Consensus 74 ~eR~~~vdFS~P~~~~~~~ilv~~~~~~~~~~~l~PF~~~vW~~il~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~w 153 (370)
++|.+.++||.|++..+..++++++++..
T Consensus 95 ~~r~~~~~~s~p~~~~~~~l~~~~~~~i~--------------------------------------------------- 123 (287)
T 2vha_A 95 VERQKQAAFSDTIFVVGTRLLTKKGGDIK--------------------------------------------------- 123 (287)
T ss_dssp HHHHTTCEEEEEEEEEEEEEEEETTSSCC---------------------------------------------------
T ss_pred cchhhcccccceeeecceEEEEECCCCCC---------------------------------------------------
Confidence 99999999999999999999999765210
Q ss_pred HHHHHhHhccCccceeeeeeccccCccccCcccchhhHHHHHHHHHHHHHHHHHhhcCCccccccccCCCCCeEeeeCCh
Q 040220 154 FNFSSILFAYGKEHVLHFIIMVNWKPIFGGRIDSNLTRLVVVVWLFVVLILTSSYTASPSPMLTVQPLRPNPKVACDRDS 233 (370)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~l~~~w~~~~lil~~~Yta~L~s~Lt~~~~~~~~~vg~~~~s 233 (370)
+++.+. +.++|+..|+
T Consensus 124 ---------------------------------------------------------------sl~dL~-g~~v~~~~g~ 139 (287)
T 2vha_A 124 ---------------------------------------------------------------DFADLK-GKAVVVTSGT 139 (287)
T ss_dssp ---------------------------------------------------------------SGGGGT-TCEEEEETTS
T ss_pred ---------------------------------------------------------------CHHHcC-CCEEEEeCCC
Confidence 011222 6677877776
Q ss_pred hHHHHHH-------------hcCChHHHHHHhhccccccc----chhHHHHhhc--ccceEEcCCCCCccceeee---CC
Q 040220 234 FVRNYLQ-------------NFGSDYNYQGEFGSNHIAGP----PYEKVFVSQY--CRIYAATTPTYGFGGLGFL---SS 291 (370)
Q Consensus 234 ~~~~~l~-------------~~~~~~~~~~~l~~g~~~a~----~~~~~~~~~~--c~~~~~~~~~~~~~~~~~a---~s 291 (370)
....++. .+.+.++++++|.+|++|+. ....+.+++. .+.+.+++..+...+++++ ++
T Consensus 140 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~G~vDa~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~ 219 (287)
T 2vha_A 140 TSEVLLNKLNEEQKMNMRIISAKDHGDSFRTLESGRAVAFMMDDALLAGERAKAKKPDNWDIVGKPQSQEAYGCMLRKDD 219 (287)
T ss_dssp HHHHHHHHHHHHTTCCCEEEEESSHHHHHHHHHTTSCSEEEEEHHHHHHHHTTSSSGGGEEEESCCSCEEEEEEEECTTC
T ss_pred cHHHHHHHHhhccCCCceEEEcCCHHHHHHHHHcCCeeEEEeChHHHHHHHHhCCCCCceEecCCccccCceEEEEeCCC
Confidence 5555443 35678999999999999993 2334445442 2347777776666777777 55
Q ss_pred c-chHHHHHHHHHhhhcCchhHHHHhhcCCCCC
Q 040220 292 P-IAADFSEAILKLSENKKLKSLEYNEKELEPP 323 (370)
Q Consensus 292 p-l~~~in~~i~~l~e~G~~~~l~~~w~~~~~~ 323 (370)
| +++.+|++|.++.++|.++++.++|+....+
T Consensus 220 ~~l~~~l~~~l~~l~~~g~~~~i~~k~~~~~~~ 252 (287)
T 2vha_A 220 PQFKKLMDDTIAQVQTSGEAEKWFDKWFKNPIP 252 (287)
T ss_dssp HHHHHHHHHHHHHHHHTTHHHHHHHHHHHSCBT
T ss_pred HHHHHHHHHHHHHHHhCchHHHHHHHHcCCCCC
Confidence 4 9999999999999999999999999987633
No 32
>2pyy_A Ionotropic glutamate receptor bacterial homologue; GLUR0 ligand binding domain, transport protein; HET: GLU; 2.10A {Nostoc punctiforme}
Probab=99.70 E-value=4.2e-17 Score=144.92 Aligned_cols=196 Identities=17% Similarity=0.173 Sum_probs=147.1
Q ss_pred CCccceEEeecCCCCCCceEEeeHHHHHHHHh-cCCceEEEE--ehhhhhhhhccccccCCceeEEEeccccccccccee
Q 040220 4 SFGKFVKVKFSDNPYENEYDGFCIELYYESQL-ACKGISILF--FFLQLMMRIRHEENFLRNYDSVVGDATILADRAKIV 80 (370)
Q Consensus 4 ~~~Pfv~~~~~~~~~~~~~~G~~idl~~~la~-lg~~~~i~~--~~~~li~~~~~~~L~~g~~Diai~~~tit~eR~~~v 80 (370)
++|||.+. . + +++.|+++|+++.+++ +|+++++.. .+..++.+ |.+|++|+++++++.+++|.+.+
T Consensus 11 ~~~P~~~~--~-~---g~~~G~~~dl~~~~~~~~g~~~~~~~~~~~~~~~~~-----l~~g~~D~~~~~~~~~~~r~~~~ 79 (228)
T 2pyy_A 11 VIPPFVLS--N-K---GELSGFSIDLWRSIATQIGIESKLIEYSSVPELISA-----IKDNKVNLGIAAISITAEREQNF 79 (228)
T ss_dssp CBTTTBBC--C-------CBSHHHHHHHHHHHHHTCCEEEEECSSHHHHHHH-----HHTTSCSEECSSCBCCHHHHHHS
T ss_pred CCCCeEEe--c-C---CceEEEeHHHHHHHHHHhCCcEEEEEcCCHHHHHHH-----HHCCCcCEEEeccccCHHHHccc
Confidence 58999876 2 2 3689999999999999 988877432 24558888 99999999999999999999999
Q ss_pred eecccccccceEEEEeCCCCcCcceecccCchHHHHHHHHHHHHHHHHHHhccccCCCCCCCCCCCCccchHHHHHHHhH
Q 040220 81 EFTQPCAESRLSMIVPAKTEESAWRFMKPCTWEMWVVTDAILVNTRFVVWFPEHQRNSEFNGPRKDQIGTALWFNFSSIL 160 (370)
Q Consensus 81 dFS~P~~~~~~~ilv~~~~~~~~~~~l~PF~~~vW~~il~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~w~~~~~~~ 160 (370)
.||.|++.....++++++++..
T Consensus 80 ~~~~p~~~~~~~~~~~~~~~~~---------------------------------------------------------- 101 (228)
T 2pyy_A 80 DFSLPIFASGLQIMVRNLESGT---------------------------------------------------------- 101 (228)
T ss_dssp EECSCSEEEEEEEEEEC---------------------------------------------------------------
T ss_pred eecccchhcceEEEEECCcccc----------------------------------------------------------
Confidence 9999999999999998765200
Q ss_pred hccCccceeeeeeccccCccccCcccchhhHHHHHHHHHHHHHHHHHhhcCCccccccccCCCCCeEeeeCChhHHHHHH
Q 040220 161 FAYGKEHVLHFIIMVNWKPIFGGRIDSNLTRLVVVVWLFVVLILTSSYTASPSPMLTVQPLRPNPKVACDRDSFVRNYLQ 240 (370)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~l~~~w~~~~lil~~~Yta~L~s~Lt~~~~~~~~~vg~~~~s~~~~~l~ 240 (370)
.. ..+.+.+. +.++|+..++....+++
T Consensus 102 --~~--------------------------------------------------~~~~~dL~-g~~i~~~~g~~~~~~l~ 128 (228)
T 2pyy_A 102 --GD--------------------------------------------------IRSIDDLP-GKVVATTAGSTAATYLR 128 (228)
T ss_dssp --CC--------------------------------------------------CCSGGGCT-TCEEEEETTSHHHHHHH
T ss_pred --CC--------------------------------------------------cCCHHHcC-CCeEEEEcCcHHHHHHH
Confidence 00 00122333 77888888887777765
Q ss_pred -------hcCChHHHHHHhhccccccc----chhHHHHhhcc-cceEEcCCCCCccceeee---CCcchHHHHHHHHHhh
Q 040220 241 -------NFGSDYNYQGEFGSNHIAGP----PYEKVFVSQYC-RIYAATTPTYGFGGLGFL---SSPIAADFSEAILKLS 305 (370)
Q Consensus 241 -------~~~~~~~~~~~l~~g~~~a~----~~~~~~~~~~c-~~~~~~~~~~~~~~~~~a---~spl~~~in~~i~~l~ 305 (370)
.+.+..+++++|.+|++|+. ....+.+.+.. ..+.+++..+...+++++ ++++.+.+|++|.++.
T Consensus 129 ~~~~~~~~~~~~~~~~~~l~~g~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~l~ 208 (228)
T 2pyy_A 129 EHHISVLEVPKIEEAYKALQTKKADAVVFDAPVLLFYAANEGKGKVEIVGSILREESYGIILPNNSPYRKPINQALLNLK 208 (228)
T ss_dssp HTTCEEEEESSHHHHHHHHHTTSSSEEEEEHHHHHHHHHTTTTTTEEEEEEEEEEEEECCEECTTCTTHHHHHHHHHHHH
T ss_pred HcCCceEecCCHHHHHHHHHcCCCCEEEecHHHHHHHHHhCCCCcEEEecccccceeEEEEEeCChHHHHHHHHHHHHHH
Confidence 46788999999999999993 23334444433 236666555555566665 7889999999999999
Q ss_pred hcCchhHHHHhhcCCC
Q 040220 306 ENKKLKSLEYNEKELE 321 (370)
Q Consensus 306 e~G~~~~l~~~w~~~~ 321 (370)
++|.++++.++|+...
T Consensus 209 ~~g~~~~i~~k~~~~~ 224 (228)
T 2pyy_A 209 ENGTYQSLYDKWFDPK 224 (228)
T ss_dssp HTTHHHHHHHHHHCC-
T ss_pred hCCcHHHHHHHHcCCc
Confidence 9999999999999865
No 33
>1xt8_A Putative amino-acid transporter periplasmic solut protein; ABC transport, cysteine uptake; 2.00A {Campylobacter jejuni} SCOP: c.94.1.1
Probab=99.70 E-value=5.8e-17 Score=151.22 Aligned_cols=193 Identities=12% Similarity=0.134 Sum_probs=151.6
Q ss_pred CCCccceEEeecCCCCCCceEEeeHHHHHHHHh-c---CCceEE-EEehhhhhhhhccccccCCceeEEEeccccccccc
Q 040220 3 TSFGKFVKVKFSDNPYENEYDGFCIELYYESQL-A---CKGISI-LFFFLQLMMRIRHEENFLRNYDSVVGDATILADRA 77 (370)
Q Consensus 3 ~~~~Pfv~~~~~~~~~~~~~~G~~idl~~~la~-l---g~~~~i-~~~~~~li~~~~~~~L~~g~~Diai~~~tit~eR~ 77 (370)
+++|||.+. +.++ ++.|+++|+++.+++ + |+++++ .+.+..++.+ |.+|++|+++++++.+++|.
T Consensus 52 ~~~~P~~~~--~~~g---~~~G~~~dl~~~i~~~~~~~g~~~~~~~~~~~~~~~~-----l~~G~~D~~~~~~~~~~~r~ 121 (292)
T 1xt8_A 52 GDKPPFGYV--DEKG---NNQGYDIALAKRIAKELFGDENKVQFVLVEAANRVEF-----LKSNKVDIILANFTQTPQRA 121 (292)
T ss_dssp SEETTTEEE--CTTS---CEESHHHHHHHHHHHHHHSCTTCEEEEECCGGGHHHH-----HHTTSCSEECSSCBCCHHHH
T ss_pred CCCCCeeEE--CCCC---CEeeEhHHHHHHHHHHhccCCceEEEEEcCHHHHHHH-----HhCCCeeEEeecCCCCcchh
Confidence 568999998 6444 799999999999999 9 998774 3446668888 99999999998899999999
Q ss_pred ceeeecccccccceEEEEeCCCCcCcceecccCchHHHHHHHHHHHHHHHHHHhccccCCCCCCCCCCCCccchHHHHHH
Q 040220 78 KIVEFTQPCAESRLSMIVPAKTEESAWRFMKPCTWEMWVVTDAILVNTRFVVWFPEHQRNSEFNGPRKDQIGTALWFNFS 157 (370)
Q Consensus 78 ~~vdFS~P~~~~~~~ilv~~~~~~~~~~~l~PF~~~vW~~il~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~w~~~~ 157 (370)
+.++||.|++..+..+++++++...
T Consensus 122 ~~~~~s~p~~~~~~~~~~~~~~~i~------------------------------------------------------- 146 (292)
T 1xt8_A 122 EQVDFCSPYMKVALGVAVPKDSNIT------------------------------------------------------- 146 (292)
T ss_dssp TTEEECCCCEEEEEEEEEETTCCCC-------------------------------------------------------
T ss_pred cceeeeccceecceEEEEECCCCCC-------------------------------------------------------
Confidence 9999999999999999999754210
Q ss_pred HhHhccCccceeeeeeccccCccccCcccchhhHHHHHHHHHHHHHHHHHhhcCCccccccccCCCCCeEeeeCChhHHH
Q 040220 158 SILFAYGKEHVLHFIIMVNWKPIFGGRIDSNLTRLVVVVWLFVVLILTSSYTASPSPMLTVQPLRPNPKVACDRDSFVRN 237 (370)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~l~~~w~~~~lil~~~Yta~L~s~Lt~~~~~~~~~vg~~~~s~~~~ 237 (370)
+.+.+. +.++|+..++....
T Consensus 147 -----------------------------------------------------------~~~dL~-g~~i~~~~g~~~~~ 166 (292)
T 1xt8_A 147 -----------------------------------------------------------SVEDLK-DKTLLLNKGTTADA 166 (292)
T ss_dssp -----------------------------------------------------------SSGGGT-TSEEEEETTSHHHH
T ss_pred -----------------------------------------------------------CHHHhC-CCEEEEeCCCcHHH
Confidence 012222 67788887776666
Q ss_pred HHH---------hcCChHHHHHHhhccccccc----chhHHHHhhcccceEEcCCCCCccce-eee---CC-cchHHHHH
Q 040220 238 YLQ---------NFGSDYNYQGEFGSNHIAGP----PYEKVFVSQYCRIYAATTPTYGFGGL-GFL---SS-PIAADFSE 299 (370)
Q Consensus 238 ~l~---------~~~~~~~~~~~l~~g~~~a~----~~~~~~~~~~c~~~~~~~~~~~~~~~-~~a---~s-pl~~~in~ 299 (370)
+++ .+.+.++++++|.+|++|+. +...+..++..+ +.+++..+...++ +++ ++ .+++.+|+
T Consensus 167 ~l~~~~~~~~~~~~~~~~~~~~~L~~G~vDa~~~~~~~~~~~~~~~~~-l~~~~~~~~~~~~~~~~~~k~~~~l~~~l~~ 245 (292)
T 1xt8_A 167 YFTQNYPNIKTLKYDQNTETFAALMDKRGDALSHDNTLLFAWVKDHPD-FKMGIKELGNKDVIAPAVKKGDKELKEFIDN 245 (292)
T ss_dssp HHHHHCTTSEEEEESSHHHHHHHHHTTSSSEEEEEHHHHHHHHHHCTT-EEEEEEEEEEEEEECCEEETTCHHHHHHHHH
T ss_pred HHHHhCCCceEEEcCCHHHHHHHHHcCCccEEEecHHHHHHHHHhCCC-eEEcccccccCceeEEEEeCCCHHHHHHHHH
Confidence 554 35678999999999999993 334455555555 6676655555566 666 55 49999999
Q ss_pred HHHHhhhcCchhHHHHhhcCCC
Q 040220 300 AILKLSENKKLKSLEYNEKELE 321 (370)
Q Consensus 300 ~i~~l~e~G~~~~l~~~w~~~~ 321 (370)
+|.++.++|.++++.++|+...
T Consensus 246 ~l~~l~~~g~~~~i~~k~~~~~ 267 (292)
T 1xt8_A 246 LIIKLGQEQFFHKAYDETLKAH 267 (292)
T ss_dssp HHHHHHTTTHHHHHHHHHTGGG
T ss_pred HHHHHHhCcHHHHHHHHhcCCc
Confidence 9999999999999999999853
No 34
>2pvu_A ARTJ; basic amino acid binding protein, ABC transport system, THER bacterium, transport protein; HET: LYS; 1.79A {Geobacillus stearothermophilus} PDB: 2q2a_A* 2q2c_A*
Probab=99.69 E-value=2.4e-16 Score=145.35 Aligned_cols=195 Identities=14% Similarity=0.144 Sum_probs=148.6
Q ss_pred CCCccceEEeecCCCCCCceEEeeHHHHHHHHh-cCCceEE-EEehhhhhhhhccccccCCceeEEEeccccccccccee
Q 040220 3 TSFGKFVKVKFSDNPYENEYDGFCIELYYESQL-ACKGISI-LFFFLQLMMRIRHEENFLRNYDSVVGDATILADRAKIV 80 (370)
Q Consensus 3 ~~~~Pfv~~~~~~~~~~~~~~G~~idl~~~la~-lg~~~~i-~~~~~~li~~~~~~~L~~g~~Diai~~~tit~eR~~~v 80 (370)
+++|||.+. + + +++.|+++|+++.+++ +|+++++ .+.+..++.+ |.+|++|+++++++.+++|.+.+
T Consensus 50 ~~~~P~~~~--~-~---g~~~G~~~dl~~~i~~~~g~~v~~~~~~~~~~~~~-----l~~G~~D~~~~~~~~~~~r~~~~ 118 (272)
T 2pvu_A 50 AAFAPFEYM--Q-K---GKIVGFDVDLLDAVMKAAGLDYELKNIGWDPLFAS-----LQSKEVDMGISGITITDERKQSY 118 (272)
T ss_dssp CCBTTTBEE--E-T---TEEESHHHHHHHHHHHHHTCCEEEEECCHHHHHHH-----HHHTSSSEECSSCBCCHHHHTTE
T ss_pred CCCCCeEEe--c-C---CeEEEEHHHHHHHHHHHhCCceEEEECCHHHHHHH-----HhCCCCCEEEeCCcCCHHHHhcC
Confidence 579999998 4 3 3799999999999999 9888773 2346668888 99999999999999999999999
Q ss_pred eecccccccceEEEEeCCCCcCcceecccCchHHHHHHHHHHHHHHHHHHhccccCCCCCCCCCCCCccchHHHHHHHhH
Q 040220 81 EFTQPCAESRLSMIVPAKTEESAWRFMKPCTWEMWVVTDAILVNTRFVVWFPEHQRNSEFNGPRKDQIGTALWFNFSSIL 160 (370)
Q Consensus 81 dFS~P~~~~~~~ilv~~~~~~~~~~~l~PF~~~vW~~il~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~w~~~~~~~ 160 (370)
+||.|++.....++++++.+..
T Consensus 119 ~~s~p~~~~~~~l~~~~~~~i~---------------------------------------------------------- 140 (272)
T 2pvu_A 119 DFSDPYFEATQVILVKQGSPVK---------------------------------------------------------- 140 (272)
T ss_dssp EECSCCEEECEEEEEETTCCCC----------------------------------------------------------
T ss_pred ccchhhhccceEEEEECCCCCC----------------------------------------------------------
Confidence 9999999999999999765310
Q ss_pred hccCccceeeeeeccccCccccCcccchhhHHHHHHHHHHHHHHHHHhhcCCccccccccCCCCCeEeeeCChhHHHHHH
Q 040220 161 FAYGKEHVLHFIIMVNWKPIFGGRIDSNLTRLVVVVWLFVVLILTSSYTASPSPMLTVQPLRPNPKVACDRDSFVRNYLQ 240 (370)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~l~~~w~~~~lil~~~Yta~L~s~Lt~~~~~~~~~vg~~~~s~~~~~l~ 240 (370)
+.+.+. +.++|+..++....+++
T Consensus 141 --------------------------------------------------------~~~dL~-g~~i~~~~g~~~~~~l~ 163 (272)
T 2pvu_A 141 --------------------------------------------------------NALDLK-GKTIGVQNATTGQEAAE 163 (272)
T ss_dssp --------------------------------------------------------SGGGGT-TSCEEEETTSHHHHHHH
T ss_pred --------------------------------------------------------CHHHhC-CCeEEEEcCchHHHHHH
Confidence 011122 55677766665544433
Q ss_pred ----------hcCChHHHHHHhhccccccc----chhHHHHhhccc-ceEEcCCCC--Cccceeee---CCcchHHHHHH
Q 040220 241 ----------NFGSDYNYQGEFGSNHIAGP----PYEKVFVSQYCR-IYAATTPTY--GFGGLGFL---SSPIAADFSEA 300 (370)
Q Consensus 241 ----------~~~~~~~~~~~l~~g~~~a~----~~~~~~~~~~c~-~~~~~~~~~--~~~~~~~a---~spl~~~in~~ 300 (370)
.+.+..+++++|.+|++|+. +...+.+++... .+.+++... ....++++ +.++++.+|++
T Consensus 164 ~~~~~~~~i~~~~~~~~~~~~l~~G~vDa~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~ 243 (272)
T 2pvu_A 164 KLFGKGPHIKKFETTVVAIMELLNGGVDAVITDNAVANEYVKNNPNKKLQVIEDPKNFASEYYGMIFPKNSELKAKVDEA 243 (272)
T ss_dssp HHHCSSTTEEEESSHHHHHHHHHTTSCSEEEEEHHHHHHHHHHCGGGCEEEECCTTTSCCEEECCEEETTCTTHHHHHHH
T ss_pred HhcCCCCeEEEcCCHHHHHHHHHcCCccEEEeCHHHHHHHHHhCCCCceEEeccccccCCceEEEEEeCCHHHHHHHHHH
Confidence 34678899999999999993 233445554432 367776543 44556665 76799999999
Q ss_pred HHHhhhcCchhHHHHhhcCCCCC
Q 040220 301 ILKLSENKKLKSLEYNEKELEPP 323 (370)
Q Consensus 301 i~~l~e~G~~~~l~~~w~~~~~~ 323 (370)
|.++.++|.++++.++|+.....
T Consensus 244 l~~l~~~g~~~~i~~k~~~~~~~ 266 (272)
T 2pvu_A 244 LKNVINSGKYTEIYKKWFGKEPK 266 (272)
T ss_dssp HHHHHHTTHHHHHHHHHHSSCCC
T ss_pred HHHHHhCChHHHHHHHHcCCCcc
Confidence 99999999999999999987643
No 35
>2yjp_A Putative ABC transporter, periplasmic binding Pro amino acid; transport protein, solute-binding protein; 2.26A {Neisseria gonorrhoeae}
Probab=99.69 E-value=1.3e-16 Score=149.10 Aligned_cols=192 Identities=11% Similarity=0.128 Sum_probs=152.6
Q ss_pred CCCccceEEeecCCCCCCceEEeeHHHHHHHHh-c---CCceEEE-EehhhhhhhhccccccCCceeEEEeccccccccc
Q 040220 3 TSFGKFVKVKFSDNPYENEYDGFCIELYYESQL-A---CKGISIL-FFFLQLMMRIRHEENFLRNYDSVVGDATILADRA 77 (370)
Q Consensus 3 ~~~~Pfv~~~~~~~~~~~~~~G~~idl~~~la~-l---g~~~~i~-~~~~~li~~~~~~~L~~g~~Diai~~~tit~eR~ 77 (370)
++|+||.+. +.++ ++.|+.+|+++.+++ + |+++++. +.+..++.. |.+|++|+++++++.+.+|.
T Consensus 63 ~~~~P~~~~--~~~g---~~~G~~~dl~~~i~~~~~~~g~~v~~~~~~~~~~~~~-----l~~G~~D~~~~~~~~~~~r~ 132 (291)
T 2yjp_A 63 GDKPPFGYV--DANG---KNQGFDVEIAKDLAKDLLGSPDKVEFVLTEAANRVEY-----VRSGKVDLILANFTQTPERA 132 (291)
T ss_dssp SEETTTEEE--CTTS---CEESHHHHHHHHHHHHHHSCGGGEEEEECCGGGHHHH-----HHTTSCSEECSSCBCCHHHH
T ss_pred CCCCCceEE--CCCC---CEeehHHHHHHHHHHHhccCCceEEEEEccHHHHHHH-----HhCCCeeEEEeCCCCChHHH
Confidence 568999998 6444 799999999999999 9 9987743 346668888 99999999999999999999
Q ss_pred ceeeecccccccceEEEEeCCCCcCcceecccCchHHHHHHHHHHHHHHHHHHhccccCCCCCCCCCCCCccchHHHHHH
Q 040220 78 KIVEFTQPCAESRLSMIVPAKTEESAWRFMKPCTWEMWVVTDAILVNTRFVVWFPEHQRNSEFNGPRKDQIGTALWFNFS 157 (370)
Q Consensus 78 ~~vdFS~P~~~~~~~ilv~~~~~~~~~~~l~PF~~~vW~~il~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~w~~~~ 157 (370)
+.++|+.|++..+..+++++++...
T Consensus 133 ~~~~~~~p~~~~~~~l~~~~~~~i~------------------------------------------------------- 157 (291)
T 2yjp_A 133 EAVDFADPYMKVALGVVSPKNKPIT------------------------------------------------------- 157 (291)
T ss_dssp TTEEECCCCEEECEEEEEETTSCCC-------------------------------------------------------
T ss_pred ccceeccCeeecceEEEEeCCCCCC-------------------------------------------------------
Confidence 9999999999999999999765210
Q ss_pred HhHhccCccceeeeeeccccCccccCcccchhhHHHHHHHHHHHHHHHHHhhcCCccccccccCCCCCeEeeeCChhHHH
Q 040220 158 SILFAYGKEHVLHFIIMVNWKPIFGGRIDSNLTRLVVVVWLFVVLILTSSYTASPSPMLTVQPLRPNPKVACDRDSFVRN 237 (370)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~l~~~w~~~~lil~~~Yta~L~s~Lt~~~~~~~~~vg~~~~s~~~~ 237 (370)
+++.+. +.++|+..++....
T Consensus 158 -----------------------------------------------------------sl~dL~-gk~v~~~~g~~~~~ 177 (291)
T 2yjp_A 158 -----------------------------------------------------------DMAQLK-DQTLLVNKGTTADA 177 (291)
T ss_dssp -----------------------------------------------------------SGGGGT-TSEEEEETTSHHHH
T ss_pred -----------------------------------------------------------CHHHhC-CCEEEEecCCcHHH
Confidence 122233 67788887776666
Q ss_pred HHH---------hcCChHHHHHHhhccccccc----chhHHHHhhcccceEEcCCCCCccce-eee---CC-cchHHHHH
Q 040220 238 YLQ---------NFGSDYNYQGEFGSNHIAGP----PYEKVFVSQYCRIYAATTPTYGFGGL-GFL---SS-PIAADFSE 299 (370)
Q Consensus 238 ~l~---------~~~~~~~~~~~l~~g~~~a~----~~~~~~~~~~c~~~~~~~~~~~~~~~-~~a---~s-pl~~~in~ 299 (370)
++. .+.+..+++++|.+|++|+. +...+..++..+ +.+++..+...++ +++ ++ .+++.+|+
T Consensus 178 ~l~~~~~~~~~~~~~~~~~~~~~l~~G~vDa~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~k~~~~l~~~l~~ 256 (291)
T 2yjp_A 178 FFTKSHPEVKLLKFDQNTETFDALKDGRGVALAHDNALLWAWAKENPN-FEVAIGNLGPAEFIAPAVQKGNADLLNWVNG 256 (291)
T ss_dssp HHHHHCTTSEEEEESSHHHHHHHHHTTSSSEEEEEHHHHHHHHHHCTT-EEEEECCSSSCEEECCEEETTCHHHHHHHHH
T ss_pred HHHHhCCCceEEEeCCHHHHHHHHHcCCccEEEecHHHHHHHHHhCCC-eEEcCCcccCCcceEEEEeCCCHHHHHHHHH
Confidence 554 35678899999999999992 344455565555 7777766666666 666 55 49999999
Q ss_pred HHHHhhhcCchhHHHHhhcCC
Q 040220 300 AILKLSENKKLKSLEYNEKEL 320 (370)
Q Consensus 300 ~i~~l~e~G~~~~l~~~w~~~ 320 (370)
+|.++.++|.++++.++|++.
T Consensus 257 al~~l~~~g~~~~i~~k~~~~ 277 (291)
T 2yjp_A 257 EIAAMKKDGRLKAAYEKTLLP 277 (291)
T ss_dssp HHHHHHHHSHHHHHHHHHTHH
T ss_pred HHHHHHhCChHHHHHHHhccc
Confidence 999999999999999999864
No 36
>2q88_A EHUB, putative ABC transporter amino acid-binding prote; substrate-binding protein, compatible solues, ABC-transporte osmoprotection; HET: 4CS; 1.90A {Sinorhizobium meliloti} PDB: 2q89_A*
Probab=99.68 E-value=1.1e-16 Score=145.76 Aligned_cols=193 Identities=11% Similarity=0.036 Sum_probs=142.6
Q ss_pred CCccceEEeecCCCCCCceEEeeHHHHHHHHh-cCCc-eEEE-EehhhhhhhhccccccCCceeEEEeccccccccccee
Q 040220 4 SFGKFVKVKFSDNPYENEYDGFCIELYYESQL-ACKG-ISIL-FFFLQLMMRIRHEENFLRNYDSVVGDATILADRAKIV 80 (370)
Q Consensus 4 ~~~Pfv~~~~~~~~~~~~~~G~~idl~~~la~-lg~~-~~i~-~~~~~li~~~~~~~L~~g~~Diai~~~tit~eR~~~v 80 (370)
++|||.+. +.++ ++.|+++|+++++++ +|++ +++. +.+..++.+ |.+|++|+++++++.+++|.+.+
T Consensus 21 ~~~P~~~~--~~~g---~~~G~~~dl~~~i~~~~g~~~~~~~~~~~~~~~~~-----l~~g~~D~~~~~~~~t~~r~~~~ 90 (257)
T 2q88_A 21 NEPPFTAV--GADG---KVSGAAPDVAREIFKRLGVADVVASISEYGAMIPG-----LQAGRHDAITAGLFMKPERCAAV 90 (257)
T ss_dssp CCTTTCEE--CTTC---CEESHHHHHHHHHHHHTTCCEEEEEECCGGGHHHH-----HHTTSCSEECSCCBCCHHHHTTS
T ss_pred CCCCeeEE--CCCC---CcccccHHHHHHHHHHcCCCeeeEEeCCHHHHHHH-----HHCCCcCEEEecccCCHHHHhcc
Confidence 78999998 6544 799999999999999 9987 6632 346668888 99999999998999999999999
Q ss_pred eecccccccceEEEEeCCCCcCcceecccCchHHHHHHHHHHHHHHHHHHhccccCCCCCCCCCCCCccchHHHHHHHhH
Q 040220 81 EFTQPCAESRLSMIVPAKTEESAWRFMKPCTWEMWVVTDAILVNTRFVVWFPEHQRNSEFNGPRKDQIGTALWFNFSSIL 160 (370)
Q Consensus 81 dFS~P~~~~~~~ilv~~~~~~~~~~~l~PF~~~vW~~il~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~w~~~~~~~ 160 (370)
+||.|++..+..+++++++.....
T Consensus 91 ~~s~p~~~~~~~~~~~~~~~~~i~-------------------------------------------------------- 114 (257)
T 2q88_A 91 AYSQPILCDAEAFALKKGNPLGLK-------------------------------------------------------- 114 (257)
T ss_dssp EECSCCCEECEEEEEETTCTTCCC--------------------------------------------------------
T ss_pred ccccchhcCceEEEEECCCccCCC--------------------------------------------------------
Confidence 999999999999999986521000
Q ss_pred hccCccceeeeeeccccCccccCcccchhhHHHHHHHHHHHHHHHHHhhcCCccccccccCC--CCCeEeeeCChhHHHH
Q 040220 161 FAYGKEHVLHFIIMVNWKPIFGGRIDSNLTRLVVVVWLFVVLILTSSYTASPSPMLTVQPLR--PNPKVACDRDSFVRNY 238 (370)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~l~~~w~~~~lil~~~Yta~L~s~Lt~~~~~--~~~~vg~~~~s~~~~~ 238 (370)
+++.+. ++.++|+..|+....+
T Consensus 115 --------------------------------------------------------~~~dL~~~~g~~i~~~~g~~~~~~ 138 (257)
T 2q88_A 115 --------------------------------------------------------SYKDIADNPDAKIGAPGGGTEEKL 138 (257)
T ss_dssp --------------------------------------------------------BHHHHHHCTTCCEEECTTSHHHHH
T ss_pred --------------------------------------------------------CHHHHhccCCceEEEECCcccHHH
Confidence 000000 0456777777666555
Q ss_pred HH----------hcCChHHHHHHhhccccccc----chhHHHHhhcc-cceEEcCCCCC--ccceeee----CCcchHHH
Q 040220 239 LQ----------NFGSDYNYQGEFGSNHIAGP----PYEKVFVSQYC-RIYAATTPTYG--FGGLGFL----SSPIAADF 297 (370)
Q Consensus 239 l~----------~~~~~~~~~~~l~~g~~~a~----~~~~~~~~~~c-~~~~~~~~~~~--~~~~~~a----~spl~~~i 297 (370)
++ .+.+.++++++|.+|++|+. +...+++++.. +.+....+... ..+++++ +..+++.+
T Consensus 139 l~~~~~~~~~~~~~~~~~~~~~~l~~grvDa~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~l~~~l 218 (257)
T 2q88_A 139 ALEAGVPRDRVIVVPDGQSGLKMLQDGRIDVYSLPVLSINDLVSKANDPNVEVLAPVEGAPVYCDGAAFRKGDEALRDAF 218 (257)
T ss_dssp HHHTTCCGGGEEECSSHHHHHHHHHHTSCSEEEEEHHHHHHHHHHHCCTTEEEECSCBTCCCEEBCCEECGGGHHHHHHH
T ss_pred HHhcCCCCceEEEcCCHHHHHHHHHcCCCcEEEcCHHHHHHHHHhCCCcceeeecccCCccccceEEEEcCCCHHHHHHH
Confidence 54 35678899999999999993 33445555443 33544433211 2244444 45699999
Q ss_pred HHHHHHhhhcCchhHHHHhhc
Q 040220 298 SEAILKLSENKKLKSLEYNEK 318 (370)
Q Consensus 298 n~~i~~l~e~G~~~~l~~~w~ 318 (370)
|++|.++.++|.++++.++|.
T Consensus 219 ~~~l~~~~~~g~~~~i~~k~~ 239 (257)
T 2q88_A 219 DVELAKLKESGEFAKIIEPYG 239 (257)
T ss_dssp HHHHHHHHHHTHHHHHHGGGT
T ss_pred HHHHHHHHhCCcHHHHHHHhC
Confidence 999999999999999999994
No 37
>2v25_A Major cell-binding factor; antigen, adhesin, aspartate, glutamate, transport, ABC transport, virulence factor, receptor; 1.49A {Campylobacter jejuni}
Probab=99.53 E-value=2.3e-14 Score=129.79 Aligned_cols=187 Identities=10% Similarity=0.166 Sum_probs=138.0
Q ss_pred CCCccceEEeecCCCCCCceEEeeHHHHHHHHh-c---CCceEEE-EehhhhhhhhccccccCCceeEEEeccccccccc
Q 040220 3 TSFGKFVKVKFSDNPYENEYDGFCIELYYESQL-A---CKGISIL-FFFLQLMMRIRHEENFLRNYDSVVGDATILADRA 77 (370)
Q Consensus 3 ~~~~Pfv~~~~~~~~~~~~~~G~~idl~~~la~-l---g~~~~i~-~~~~~li~~~~~~~L~~g~~Diai~~~tit~eR~ 77 (370)
++++||.+. +.++ +++.|+++|+++.+++ + |+++++. +.+..++.. |.+|++|+++++++.+++|.
T Consensus 46 ~~~~p~~~~--~~~~--g~~~G~~~~l~~~~~~~~~~pg~~v~~~~~~~~~~~~~-----l~~g~~D~~~~~~~~~~~~~ 116 (259)
T 2v25_A 46 NDVPHYALL--DQAT--GEIKGFEVDVAKLLAKSILGDDKKIKLVAVNAKTRGPL-----LDNGSVDAVIATFTITPERK 116 (259)
T ss_dssp SEETTTEEE--ETTT--TEEESHHHHHHHHHHHHHHSCTTSEEEEECCTTTHHHH-----HHTTSCSEECSSCBCCHHHH
T ss_pred CCCCCeEEE--ECCC--CeEEEeeHHHHHHHHHHhcCCCcceEEEEcCHHHHHHH-----HhCCCCCEEEecCccCHHHH
Confidence 568999998 5322 3899999999999999 9 9887742 345558888 99999999999899999999
Q ss_pred ceeeecccccccceEEEEeCCCCcCcceecccCchHHHHHHHHHHHHHHHHHHhccccCCCCCCCCCCCCccchHHHHHH
Q 040220 78 KIVEFTQPCAESRLSMIVPAKTEESAWRFMKPCTWEMWVVTDAILVNTRFVVWFPEHQRNSEFNGPRKDQIGTALWFNFS 157 (370)
Q Consensus 78 ~~vdFS~P~~~~~~~ilv~~~~~~~~~~~l~PF~~~vW~~il~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~w~~~~ 157 (370)
+.++|+.|++.....++++++.+..
T Consensus 117 ~~~~~~~p~~~~~~~~~~~~~~~i~------------------------------------------------------- 141 (259)
T 2v25_A 117 RIYNFSEPYYQDAIGLLVLKEKKYK------------------------------------------------------- 141 (259)
T ss_dssp TTEEECSCSEEEEEEEEEEGGGCCC-------------------------------------------------------
T ss_pred hcCcccccceeCceEEEEeCCCCCC-------------------------------------------------------
Confidence 9999999999999999998754211
Q ss_pred HhHhccCccceeeeeeccccCccccCcccchhhHHHHHHHHHHHHHHHHHhhcCCccccccccCCCCCeEeeeCChhHHH
Q 040220 158 SILFAYGKEHVLHFIIMVNWKPIFGGRIDSNLTRLVVVVWLFVVLILTSSYTASPSPMLTVQPLRPNPKVACDRDSFVRN 237 (370)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~l~~~w~~~~lil~~~Yta~L~s~Lt~~~~~~~~~vg~~~~s~~~~ 237 (370)
+.+.+. +.++|+..++....
T Consensus 142 -----------------------------------------------------------~~~dL~-g~~i~~~~g~~~~~ 161 (259)
T 2v25_A 142 -----------------------------------------------------------SLADMK-GANIGVAQAATTKK 161 (259)
T ss_dssp -----------------------------------------------------------SGGGCT-TCEEEEETTCSHHH
T ss_pred -----------------------------------------------------------CHHHhC-CCEEEEecCCchHH
Confidence 011122 55566655554433
Q ss_pred HHH-------------hcCChHHHHHHhhcccccccchh----HHHHhhcccceEEcCCCCCccceeee---CC-cchHH
Q 040220 238 YLQ-------------NFGSDYNYQGEFGSNHIAGPPYE----KVFVSQYCRIYAATTPTYGFGGLGFL---SS-PIAAD 296 (370)
Q Consensus 238 ~l~-------------~~~~~~~~~~~l~~g~~~a~~~~----~~~~~~~c~~~~~~~~~~~~~~~~~a---~s-pl~~~ 296 (370)
.+. .+.+..+.+++|.+|++|+.... .+..++..+ +++..+....++++ ++ ++.+.
T Consensus 162 ~~~~~~~~~g~~~~~~~~~~~~~~~~~l~~g~vDa~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~k~~~~l~~~ 238 (259)
T 2v25_A 162 AIGEAAKKIGIDVKFSEFPDYPSIKAALDAKRVDAFSVDKSILLGYVDDKSE---ILPDSFEPQSYGIVTKKDDPAFAKY 238 (259)
T ss_dssp HHHHHHHHTTCCCEEEEESSHHHHHHHHHTTSSSEEEEEHHHHTTTCCTTEE---ECSCCCSEEEECCEEETTCHHHHHH
T ss_pred HHHHHHHhcCCceeEEEeCCHHHHHHHHHcCCCcEEEecHHHHHHHHHhCCC---ccccccccceeEEEEcCCCHHHHHH
Confidence 322 35678899999999999994332 233333332 45555555566666 54 69999
Q ss_pred HHHHHHHhhhcCchhHHHHhhc
Q 040220 297 FSEAILKLSENKKLKSLEYNEK 318 (370)
Q Consensus 297 in~~i~~l~e~G~~~~l~~~w~ 318 (370)
+|++|.++.++ ++++.++|.
T Consensus 239 ~~~~l~~~~~~--~~~i~~k~~ 258 (259)
T 2v25_A 239 VDDFVKEHKNE--IDALAKKWG 258 (259)
T ss_dssp HHHHHHHTHHH--HHHHHHHTT
T ss_pred HHHHHHHHHHH--HHHHHHHhC
Confidence 99999999999 999999994
No 38
>2ozz_A Hypothetical protein YHFZ; alpha-beta structure, structural genomics, PSI-2, protein structure initiative; 2.30A {Shigella flexneri 2A} SCOP: c.94.1.1
Probab=98.50 E-value=2.8e-07 Score=83.13 Aligned_cols=73 Identities=11% Similarity=-0.045 Sum_probs=54.9
Q ss_pred CceEEeeHHHHHHHHhcCCceEEEEe--hhhhhhhhccccccCCceeEEEeccccccc------ccceeeecccccccce
Q 040220 20 NEYDGFCIELYYESQLACKGISILFF--FLQLMMRIRHEENFLRNYDSVVGDATILAD------RAKIVEFTQPCAESRL 91 (370)
Q Consensus 20 ~~~~G~~idl~~~la~lg~~~~i~~~--~~~li~~~~~~~L~~g~~Diai~~~tit~e------R~~~vdFS~P~~~~~~ 91 (370)
.+|.|+.--|...+ + |+++++.+- +...+.. |++|++|+||++++.+++ |++++|||.||+.+..
T Consensus 28 ~~yeGlatgl~~~f-~-gi~~~i~~mrg~~~RI~a-----L~~gk~D~aI~S~~aa~e~~~~~~r~~~vdFg~~yYv~~h 100 (231)
T 2ozz_A 28 RLYEGLASGLKAQF-D-GIPFYYAHMRGADIRVEC-----LLNGVYDMAVVSRLAAESYLSQNNLCIALELGPHTYVGEH 100 (231)
T ss_dssp HHHHHHHHHHHHTT-T-TSCEEEEECSCHHHHHHH-----HHTTSCSEEEEEHHHHHHHHHHSCEEEEEECCTTSSSCCE
T ss_pred hhhhHHHHHHHHHh-c-CCcEEEEEccChHHHHHH-----HHcCCCCEEEEecccchhhhcccCeEEEEEcCCCccccCe
Confidence 45666554444333 2 445553332 4447777 999999999999999999 9999999999998888
Q ss_pred EEEEeCCC
Q 040220 92 SMIVPAKT 99 (370)
Q Consensus 92 ~ilv~~~~ 99 (370)
.+++++++
T Consensus 101 ~li~~~~~ 108 (231)
T 2ozz_A 101 QLICRKGE 108 (231)
T ss_dssp EEEEETTC
T ss_pred EEEEeCCC
Confidence 89888765
No 39
>3p7i_A PHND, subunit of alkylphosphonate ABC transporter; phosphonate binding protein, transport protein; 1.71A {Escherichia coli UTI89} PDB: 3qk6_A 3quj_A* 3s4u_A
Probab=97.29 E-value=0.00073 Score=63.75 Aligned_cols=75 Identities=3% Similarity=-0.071 Sum_probs=51.7
Q ss_pred CChHHHHHHhhccccccc----chhHHHHhhc---ccceEEcCCCCCccceeee---C--CcchHHHHHHHHHhhhcCch
Q 040220 243 GSDYNYQGEFGSNHIAGP----PYEKVFVSQY---CRIYAATTPTYGFGGLGFL---S--SPIAADFSEAILKLSENKKL 310 (370)
Q Consensus 243 ~~~~~~~~~l~~g~~~a~----~~~~~~~~~~---c~~~~~~~~~~~~~~~~~a---~--spl~~~in~~i~~l~e~G~~ 310 (370)
.+..+.+.+|.+|++|+. +....+.++. ...++++........++++ + .++++.+|.+|.++.++|..
T Consensus 164 ~~~~~a~~al~~G~vDa~~~~~~~~~~~~~~~p~~~~~lrvl~~s~~~p~~~i~~~k~~~~~l~~~l~~aL~~~~~d~~~ 243 (321)
T 3p7i_A 164 AGHETNALAVANKQVDVATNNTENLDKLKTSAPEKLKELKVIWKSPLIPGDPIVWRKNLSETTKDKIYDFFMNYGKTPEE 243 (321)
T ss_dssp CCHHHHHHHHHTTSSSEEEEEHHHHHTHHHHCHHHHTTEEEEEECSCBCCCEEEEETTSCHHHHHHHHHHHHHTTCSHHH
T ss_pred CCHHHHHHHHHCCCceEEEechHHHHHHHHhCcchhccEEEEEEcCCCCCCceeeeCCCCHHHHHHHHHHHHhcCCCHHH
Confidence 456788999999999992 2223333332 2346776544334455555 4 35999999999999999998
Q ss_pred hHHHHhh
Q 040220 311 KSLEYNE 317 (370)
Q Consensus 311 ~~l~~~w 317 (370)
+++.+++
T Consensus 244 ~~~l~~~ 250 (321)
T 3p7i_A 244 KAVLERL 250 (321)
T ss_dssp HHHHHHH
T ss_pred HHHHHhc
Confidence 8877765
No 40
>2k1e_A Water soluble analogue of potassium channel, KCSA; homotetramer, ION transport, ionic channel, membrane, transmembrane, transport; NMR {Escherichia coli} PDB: 2kb1_A
Probab=97.20 E-value=0.00035 Score=54.65 Aligned_cols=77 Identities=13% Similarity=0.055 Sum_probs=60.5
Q ss_pred HHHHHHHHHHhccccCCCCCCCCCCCCccchHHHHHHHhHhccCccceeeeeeccccCccccCc-ccchhhHHHHHHHHH
Q 040220 121 ILVNTRFVVWFPEHQRNSEFNGPRKDQIGTALWFNFSSILFAYGKEHVLHFIIMVNWKPIFGGR-IDSNLTRLVVVVWLF 199 (370)
Q Consensus 121 ~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~R~l~~~w~~ 199 (370)
.+++.+.+.+.+|+..+. +...++.+++|+++.++++.+ ||+. |.+..+|++...|++
T Consensus 18 ~~~~~a~~~~~~E~~~~~----~~~~~~~~a~y~~~~T~tTvG-----------------yGDi~P~t~~gr~~~~~~~l 76 (103)
T 2k1e_A 18 VLEEASKKAVEAERGAPG----AALISYPDAIWWSVETATTVG-----------------YGDRYPVTEEGRKVAEQVMK 76 (103)
T ss_dssp HHHHHHHHHHHHHTTSTT----CCCCCGGGTTTTTTGGGGCCS-----------------CCSSCCCSSSCTHHHHHHHH
T ss_pred HHHHHHHhhhhhccCCCC----cccccHHHHHHHHHHHHhccc-----------------CCCCCCCChhHHHHHHHHHH
Confidence 344556677888876432 233468899999999999875 3344 899999999999999
Q ss_pred HHHHHHHHhhcCCcccccc
Q 040220 200 VVLILTSSYTASPSPMLTV 218 (370)
Q Consensus 200 ~~lil~~~Yta~L~s~Lt~ 218 (370)
+++.+.+...+.+++.++.
T Consensus 77 ~G~~~~~~~~~~i~~~~~~ 95 (103)
T 2k1e_A 77 AGIEVFALVTAALATDFVR 95 (103)
T ss_dssp HHHHHHHHTHHHHHTTGGG
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 9999999999999988764
No 41
>3n5l_A Binding protein component of ABC phosphonate TRAN; structural genomics, joint center for structural genomics; HET: UNL; 1.97A {Pseudomonas aeruginosa}
Probab=97.14 E-value=0.00065 Score=63.71 Aligned_cols=75 Identities=8% Similarity=-0.053 Sum_probs=51.2
Q ss_pred CChHHHHHHhhccccccc----chhHHHHhhcc---cceEEcCCCCCccceeee---C--CcchHHHHHHHHHhhhcCch
Q 040220 243 GSDYNYQGEFGSNHIAGP----PYEKVFVSQYC---RIYAATTPTYGFGGLGFL---S--SPIAADFSEAILKLSENKKL 310 (370)
Q Consensus 243 ~~~~~~~~~l~~g~~~a~----~~~~~~~~~~c---~~~~~~~~~~~~~~~~~a---~--spl~~~in~~i~~l~e~G~~ 310 (370)
.+..+.+.+|.+|++|+. +....+.++.. ..++++........++++ + .++++.+|.+|.++.++|.+
T Consensus 155 g~~~~~~~al~~G~vDa~~~~~~~~~~~~~~~~~~~~~lrvl~~s~~~p~~~i~~~~~~~~~l~~~l~~al~~~~~d~~~ 234 (310)
T 3n5l_A 155 SSHEVNALAVANKQVDVATFNTEGMERLELTQPEKARQLKVIWKSPLIPGDPLVWRNNLSDEQKNKLRDFFFKYGANAEQ 234 (310)
T ss_dssp CCHHHHHHHHHTTSSSEEEEEHHHHHHHHHHCHHHHTTEEEEEEEEEEECCEEEEETTSCHHHHHHHHHHHHHCCCSHHH
T ss_pred CCHHHHHHHHHcCCccEEEecchhHHHHHHhCccchhCEEEEEECCCCCCCcEEEECCCCHHHHHHHHHHHHhcCCChhH
Confidence 456678999999999992 22333444321 236665443223345555 4 35999999999999999999
Q ss_pred hHHHHhh
Q 040220 311 KSLEYNE 317 (370)
Q Consensus 311 ~~l~~~w 317 (370)
+++.+++
T Consensus 235 ~~~l~~~ 241 (310)
T 3n5l_A 235 KKVLADL 241 (310)
T ss_dssp HHHHHHT
T ss_pred HHHHHhc
Confidence 8888776
No 42
>2ih3_C Voltage-gated potassium channel; ION channel D-amino acid semi-synthetic, membrane protein; HET: 1EM; 1.72A {Streptomyces lividans} PDB: 2ih1_C* 1r3j_C* 1k4d_C* 1r3i_C* 1k4c_C* 1r3k_C* 1r3l_C* 2bob_C* 2boc_C* 2hvj_C* 2hvk_C* 2itc_C 2itd_C 3gb7_C* 3iga_C* 1jvm_A 1s5h_C* 3ifx_A* 1j95_A 2jk5_C* ...
Probab=97.12 E-value=0.00074 Score=54.51 Aligned_cols=75 Identities=17% Similarity=0.187 Sum_probs=58.9
Q ss_pred HHHHHHHHhccccCCCCCCCCCCCCccchHHHHHHHhHhccCccceeeeeeccccCccccCc-ccchhhHHHHHHHHHHH
Q 040220 123 VNTRFVVWFPEHQRNSEFNGPRKDQIGTALWFNFSSILFAYGKEHVLHFIIMVNWKPIFGGR-IDSNLTRLVVVVWLFVV 201 (370)
Q Consensus 123 ~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~R~l~~~w~~~~ 201 (370)
++.+.++|.+|+..+ ++...++.+++|+++.++++.| ||+- |.+..+|++...|.+++
T Consensus 41 ~~~a~~~~~~E~~~~----~~~~~~~~~a~y~~~~T~tTvG-----------------yGDi~P~t~~gr~~~~~~~~~G 99 (122)
T 2ih3_C 41 LAGSYLAVLAERGAP----GAQLITYPRALWWACETATTVA-----------------YGDLYPVTLWGRLVAVVVMVAG 99 (122)
T ss_dssp HHHHHHHHHHHTTST----TCCCCSHHHHHHHHHHHHTTCC-----------------CSSSCCCSHHHHHHHHHHHHHH
T ss_pred HHHHHhhheeeecCC----CCccCccccchhheeeeeeeee-----------------cCCCCCCCccHHHHHHHHHHHH
Confidence 445667778887542 2233468899999999999875 3343 89999999999999999
Q ss_pred HHHHHHhhcCCcccccc
Q 040220 202 LILTSSYTASPSPMLTV 218 (370)
Q Consensus 202 lil~~~Yta~L~s~Lt~ 218 (370)
+.+.+...+.+++.++.
T Consensus 100 i~~~~~~~~~i~~~~~~ 116 (122)
T 2ih3_C 100 ITSFGLVTAALATWFVG 116 (122)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 99999999999887753
No 43
>3eff_K Voltage-gated potassium channel; FULL length KCSA, bulge helix, cell membrane, ION transport, ionic channel, membrane, transmembrane; 3.80A {Streptomyces lividans}
Probab=96.98 E-value=0.0022 Score=52.77 Aligned_cols=75 Identities=17% Similarity=0.188 Sum_probs=57.9
Q ss_pred HHHHHHHHhccccCCCCCCCCCCCCccchHHHHHHHhHhccCccceeeeeeccccCccccCc-ccchhhHHHHHHHHHHH
Q 040220 123 VNTRFVVWFPEHQRNSEFNGPRKDQIGTALWFNFSSILFAYGKEHVLHFIIMVNWKPIFGGR-IDSNLTRLVVVVWLFVV 201 (370)
Q Consensus 123 ~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~R~l~~~w~~~~ 201 (370)
++.+.+++.+|+..+ ++...++.+++|+++.++++.| ||+- |.+..+|++.+.|.+++
T Consensus 20 ~~~a~~~~~~e~~~~----~~~~~~~~~a~yf~~~T~tTvG-----------------yGd~~P~t~~~r~~~~~~~~~G 78 (139)
T 3eff_K 20 LAGSYLAVLAERGAP----GAQLITYPRALWWSVETATTVG-----------------YGDLYPVTLWGRLVAVVVMVAG 78 (139)
T ss_dssp HHHHHHHHHTTSSCT----TCCCCCHHHHHHHHHHHHTTCC-----------------CSSSCCCSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCC----CcccCCHHHHHHHHheeeeccc-----------------CCCCcCCCcCHHHHHHHHHHHH
Confidence 344666677776542 2233457899999999999875 3343 89999999999999999
Q ss_pred HHHHHHhhcCCcccccc
Q 040220 202 LILTSSYTASPSPMLTV 218 (370)
Q Consensus 202 lil~~~Yta~L~s~Lt~ 218 (370)
+.+.+...+.+++.+..
T Consensus 79 ~~~~~~~~~~i~~~~~~ 95 (139)
T 3eff_K 79 ITSFGLVTAALATWFVG 95 (139)
T ss_dssp HHHHHHHHHHHTTTTTH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 99999999999988743
No 44
>2a9h_A Voltage-gated potassium channel; potassium channel, KCSA, structure, membrane protein, metal transport; HET: PCA; NMR {Streptomyces lividans} SCOP: f.14.1.1
Probab=96.88 E-value=0.0017 Score=54.66 Aligned_cols=79 Identities=15% Similarity=0.146 Sum_probs=61.0
Q ss_pred HHHHHHHHHhccccCCCCCCCCCCCCccchHHHHHHHhHhccCccceeeeeeccccCccccCc-ccchhhHHHHHHHHHH
Q 040220 122 LVNTRFVVWFPEHQRNSEFNGPRKDQIGTALWFNFSSILFAYGKEHVLHFIIMVNWKPIFGGR-IDSNLTRLVVVVWLFV 200 (370)
Q Consensus 122 ~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~R~l~~~w~~~ 200 (370)
+++.+.+++.+|+..+ ++...++.+++|+++.++++.| ||+- |.+..+|++...+.++
T Consensus 63 i~~~a~~~~~~E~~~~----~~~~~s~~~a~y~s~vTltTVG-----------------YGDi~P~t~~gr~~~~~~~l~ 121 (155)
T 2a9h_A 63 LLAGSYLAVLAERGAP----GAALISYPDALWWSVETATTVG-----------------YGDLYPVTLWGRCVAVVVMVA 121 (155)
T ss_dssp HHHHHHHHHHHHTTSS----CSSTTSHHHHHHHHHHHHTTCC-----------------CSSSCCCSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCC----CCccCcccceeheeeeeeeccc-----------------CCCCCCCChhHHHHHHHHHHH
Confidence 3445666788887542 2223468899999999999875 3343 8999999999999999
Q ss_pred HHHHHHHhhcCCccccccccC
Q 040220 201 VLILTSSYTASPSPMLTVQPL 221 (370)
Q Consensus 201 ~lil~~~Yta~L~s~Lt~~~~ 221 (370)
++.+.+..++.+++.++....
T Consensus 122 Gv~~~a~~~~~i~~~~~~~~~ 142 (155)
T 2a9h_A 122 GITSYGLVFAAVATWFVGREQ 142 (155)
T ss_dssp HHHHHHHHHHHHHHHHHSCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999988865443
No 45
>4h33_A LMO2059 protein; bilayers, KVLM, lipidic cubic phase (LCP), pore module, ION membrane protein; HET: OLC; 3.10A {Listeria monocytogenes} PDB: 4h37_A
Probab=96.40 E-value=0.0077 Score=49.46 Aligned_cols=57 Identities=11% Similarity=0.253 Sum_probs=48.9
Q ss_pred CccchHHHHHHHhHhccCccceeeeeeccccCccccCc-ccchhhHHHHHHHHHHHHHHHHHhhcCCcccccccc
Q 040220 147 QIGTALWFNFSSILFAYGKEHVLHFIIMVNWKPIFGGR-IDSNLTRLVVVVWLFVVLILTSSYTASPSPMLTVQP 220 (370)
Q Consensus 147 ~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~R~l~~~w~~~~lil~~~Yta~L~s~Lt~~~ 220 (370)
++.+++|+++.++++.| ||+- |.+..+|++...|+++++.+.+...+.+++.++...
T Consensus 43 ~~~~a~y~~~~T~tTvG-----------------yGDi~P~t~~gr~~~~~~~~~g~~~~~~~~~~i~~~~~~~~ 100 (137)
T 4h33_A 43 NYPDALWWAIVTATTVG-----------------YGDIVPVTPIGRILASIMMLFGIAFIGMITSTITNFFRCKK 100 (137)
T ss_dssp SHHHHHHHHHHHHTTCC-----------------CSSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTTT
T ss_pred CHHHHHHHHHHHHHccc-----------------CCCCCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 47799999999999875 3444 899999999999999999999999999998876543
No 46
>2x26_A Periplasmic aliphatic sulphonates-binding protein; transport protein; 1.75A {Escherichia coli}
Probab=96.26 E-value=0.058 Score=49.38 Aligned_cols=63 Identities=13% Similarity=-0.024 Sum_probs=40.9
Q ss_pred HHHh-c-CCceEEE-Eeh-hhhhhhhccccccCCceeEEEecccccc-cccc----eeeecccccccceEEEEeCCC
Q 040220 32 ESQL-A-CKGISIL-FFF-LQLMMRIRHEENFLRNYDSVVGDATILA-DRAK----IVEFTQPCAESRLSMIVPAKT 99 (370)
Q Consensus 32 ~la~-l-g~~~~i~-~~~-~~li~~~~~~~L~~g~~Diai~~~tit~-eR~~----~vdFS~P~~~~~~~ilv~~~~ 99 (370)
.+++ + |+++++. +.. .+++.+ |.+|++|+++++..... .+.+ .+.++.|+...+..+++++++
T Consensus 24 ~~~~~~~g~~v~~~~~~~~~~~~~~-----l~~G~~D~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~lv~~~~~ 95 (308)
T 2x26_A 24 LLEKRYPESKISWVEFPAGPQMLEA-----LNVGSIDLGSTGDIPPIFAQAAGADLVYVGVEPPKPKAEVILVAENS 95 (308)
T ss_dssp HHHHHCTTSEEEEEECSSHHHHHHH-----HHHTSCSEEEECSHHHHHHHHTTCCEEEEEEECCCGGGEEEEEETTC
T ss_pred hHhHhcCCCceEEEECCCcHHHHHH-----HHCCCCCEEcccCcHHHHHHhcCCCeEEEEEecCCCCceEEEEeCCC
Confidence 3555 5 6665532 233 348888 99999999987665431 1211 456777777778888888754
No 47
>3ldc_A Calcium-gated potassium channel MTHK; transmembrane, ION channel, open conformation, IO transport; 1.45A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3lde_A 4hyo_A 4hz3_D 3r65_A 3ous_A 3ldd_A
Probab=95.64 E-value=0.021 Score=42.39 Aligned_cols=65 Identities=11% Similarity=0.097 Sum_probs=50.3
Q ss_pred HHHHHHHHhccccCCCCCCCCCCCCccchHHHHHHHhHhccCccceeeeeeccccCccccC-cccchhhHHHHHHHHHHH
Q 040220 123 VNTRFVVWFPEHQRNSEFNGPRKDQIGTALWFNFSSILFAYGKEHVLHFIIMVNWKPIFGG-RIDSNLTRLVVVVWLFVV 201 (370)
Q Consensus 123 ~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~R~l~~~w~~~~ 201 (370)
+..+...+..|+. ++.+++|+++.++.+.+ ||+ .|++..+|++...+.+.+
T Consensus 15 ~~g~~~~~~~e~~-----------~~~~a~yf~~~T~tTvG-----------------yGdi~P~t~~~r~~~~~~~~~G 66 (82)
T 3ldc_A 15 IYGTAGFHFIEGE-----------SWTVSLYWTFVTIATVG-----------------YGDYSPHTPLGMYFTCTLIVLG 66 (82)
T ss_dssp HHHHHHHHHHHCC-----------CHHHHHHHHHHHHTTCC-----------------CCSSCCCSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcC-----------CHHHHHHHHHHHhcccC-----------------CCCCCCCCccHHHHHHHHHHHH
Confidence 3344455566653 57799999999999875 334 389999999999999999
Q ss_pred HHHHHHhhcCCccc
Q 040220 202 LILTSSYTASPSPM 215 (370)
Q Consensus 202 lil~~~Yta~L~s~ 215 (370)
+.+.+...+.+++.
T Consensus 67 ~~~~~~~~~~i~~~ 80 (82)
T 3ldc_A 67 IGTFAVAVERLLEF 80 (82)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 99999888877654
No 48
>3pjs_K KCSA, voltage-gated potassium channel; ION channel, conducts K+ IONS, cell membrane, transport PROT; 3.80A {Streptomyces lividans} PDB: 1f6g_A
Probab=95.16 E-value=0.0019 Score=54.96 Aligned_cols=57 Identities=19% Similarity=0.148 Sum_probs=49.4
Q ss_pred CCCccchHHHHHHHhHhccCccceeeeeeccccCccccCc-ccchhhHHHHHHHHHHHHHHHHHhhcCCcccccc
Q 040220 145 KDQIGTALWFNFSSILFAYGKEHVLHFIIMVNWKPIFGGR-IDSNLTRLVVVVWLFVVLILTSSYTASPSPMLTV 218 (370)
Q Consensus 145 ~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~R~l~~~w~~~~lil~~~Yta~L~s~Lt~ 218 (370)
..++.+++|+++.++++.| ||+- |.+..+|++.+.|.++++++.+...+.+++.++.
T Consensus 65 ~~~~~~a~yf~~~T~tTvG-----------------yGDi~P~t~~~r~~~~~~~l~G~~~~~~~~~~i~~~~~~ 122 (166)
T 3pjs_K 65 LITYPRALWWSVETATTVG-----------------YGDLYPVTLWGRLVAVVVMVAGITSFGLVTAALATWFVG 122 (166)
T ss_dssp CCSTTTTTTTTHHHHSCCC-----------------CSSSCCCSSTTTTTTHHHHHHHHHHHHHHHTTSSSSSSS
T ss_pred cCCHHHHHHHHHHHhcccc-----------------CCCCCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3568899999999999875 3343 8999999999999999999999999999999864
No 49
>3ouf_A Potassium channel protein; ION channel, membrane, membrane protein; 1.55A {Bacillus cereus} PDB: 3t4z_A 3tcu_A 3t1c_A 3tet_A 3t4d_A 3t2m_A 3e86_A 3e83_A 3e89_A 3e8b_A 3e8f_A 3e8g_A 3e8h_A 3k0d_A 3k0g_A 3k06_A 3k08_A 3k04_A 3k03_A
Probab=95.05 E-value=0.031 Score=42.87 Aligned_cols=57 Identities=11% Similarity=0.293 Sum_probs=48.4
Q ss_pred CccchHHHHHHHhHhccCccceeeeeeccccCccccC-cccchhhHHHHHHHHHHHHHHHHHhhcCCcccccccc
Q 040220 147 QIGTALWFNFSSILFAYGKEHVLHFIIMVNWKPIFGG-RIDSNLTRLVVVVWLFVVLILTSSYTASPSPMLTVQP 220 (370)
Q Consensus 147 ~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~R~l~~~w~~~~lil~~~Yta~L~s~Lt~~~ 220 (370)
++.+++|+++.++.+.+ ||+ .|.+..+|++...|.++++.+.+...+.+++.++.++
T Consensus 32 ~~~~a~yf~~~T~tTvG-----------------yGdi~P~t~~gr~~~~~~~~~G~~~~~~~i~~i~~~~~~~~ 89 (97)
T 3ouf_A 32 RPIDALYFSVVTLTTVG-----------------YGDFSPQTDFGKIFTILYIFIGIGLVFGFIHKLAVNVQLPS 89 (97)
T ss_dssp CHHHHHHHHHHHHTTCC-----------------CCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHH
T ss_pred CHHHHHHHHHHHHHccC-----------------CCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 47799999999999875 334 4899999999999999999999999999988776544
No 50
>2q67_A Potassium channel protein; inverted teepee, helix bundle, tetramer, central cavity, ION metal transport, membrane protein; 2.30A {Bacillus cereus} PDB: 2q68_A 2q6a_A 2q69_A 2ahy_A 2ahz_A
Probab=94.95 E-value=0.042 Score=43.50 Aligned_cols=56 Identities=11% Similarity=0.236 Sum_probs=46.7
Q ss_pred CccchHHHHHHHhHhccCccceeeeeeccccCccccCc-ccchhhHHHHHHHHHHHHHHHHHhhcCCccccccc
Q 040220 147 QIGTALWFNFSSILFAYGKEHVLHFIIMVNWKPIFGGR-IDSNLTRLVVVVWLFVVLILTSSYTASPSPMLTVQ 219 (370)
Q Consensus 147 ~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~R~l~~~w~~~~lil~~~Yta~L~s~Lt~~ 219 (370)
++.+++|+++.++++.| ||+- |.+..+|++...|.+.++.+.+...+.+++.++..
T Consensus 49 ~~~~a~y~~~~T~tTvG-----------------yGdi~P~t~~gr~~~~~~~~~G~~~~~~~~~~l~~~~~~~ 105 (114)
T 2q67_A 49 RPIDALYFSVVTLTTVG-----------------AGNFSPQTDFGKIFTILYIFIGIGLVFGFIHKLAVNVQLP 105 (114)
T ss_dssp CHHHHHHHHHHHHTSCC-----------------CSSCCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-
T ss_pred CHHHHHHHHHHHhccee-----------------CCCCccCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46799999999999775 3343 89999999999999999999999998888776543
No 51
>3vou_A ION transport 2 domain protein, voltage-gated SOD channel; 4-helical bundle, ION channel, membrane, transport protein; 3.20A {Bacillus weihenstephanensis}
Probab=94.85 E-value=0.058 Score=44.67 Aligned_cols=55 Identities=11% Similarity=0.240 Sum_probs=46.1
Q ss_pred CccchHHHHHHHhHhccCccceeeeeeccccCccccC-cccchhhHHHHHHHHHHHHHHHHHhhcCCcccccc
Q 040220 147 QIGTALWFNFSSILFAYGKEHVLHFIIMVNWKPIFGG-RIDSNLTRLVVVVWLFVVLILTSSYTASPSPMLTV 218 (370)
Q Consensus 147 ~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~R~l~~~w~~~~lil~~~Yta~L~s~Lt~ 218 (370)
++.+++|+++.++++.| ||+ .|.+..+|++...|.++++.+.+...+.+++.+..
T Consensus 52 ~~~~a~y~~~~t~tTvG-----------------yGd~~p~t~~~r~~~~~~~~~g~~~~~~~~~~~~~~~~~ 107 (148)
T 3vou_A 52 RPLDALYFSVVTLTTVG-----------------DGNFSPQTDFGKVFTILYIFIGIGLVFGFIHKLAVNVQL 107 (148)
T ss_dssp CHHHHHHHHHHHHTTCC-----------------CSSCCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCH
T ss_pred CHHHHHHHHHHHHHccC-----------------CCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57799999999999876 233 48899999999999999999999888888776544
No 52
>1orq_C Potassium channel; voltage-dependent, KVAP, FAB complex, MEM protein; 3.20A {Aeropyrum pernix} SCOP: f.14.1.1 PDB: 2a0l_A
Probab=94.83 E-value=0.05 Score=48.00 Aligned_cols=73 Identities=11% Similarity=0.205 Sum_probs=55.4
Q ss_pred HHHHHHHhccccCCCCCCCCCCCCccchHHHHHHHhHhccCccceeeeeeccccCccccC-cccchhhHHHHHHHHHHHH
Q 040220 124 NTRFVVWFPEHQRNSEFNGPRKDQIGTALWFNFSSILFAYGKEHVLHFIIMVNWKPIFGG-RIDSNLTRLVVVVWLFVVL 202 (370)
Q Consensus 124 ~~~~~~~~~~r~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~R~l~~~w~~~~l 202 (370)
+.+.+.+..|+..+ ++...++.+++|+++.++++.| ||+ .|.++.+|++...++++++
T Consensus 146 ~~~~~~~~~e~~~~----~~~~~~~~~s~y~~~~t~tTvG-----------------yGdi~P~t~~~~~~~~~~~~~G~ 204 (223)
T 1orq_C 146 YGAFAIYIVEYPDP----NSSIKSVFDALWWAVVTATTVG-----------------YGDVVPATPIGKVIGIAVMLTGI 204 (223)
T ss_dssp HHHHHHHHTTSSST----TCSCCSHHHHHHHHHHHHTTCC-----------------CCSSCCCSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCc----CCCcCcchhHHHhHHhHHhccC-----------------CCCCCCCCHhHHHHHHHHHHHHH
Confidence 34556677776322 1223468899999999999765 233 4899999999999999999
Q ss_pred HHHHHhhcCCccccc
Q 040220 203 ILTSSYTASPSPMLT 217 (370)
Q Consensus 203 il~~~Yta~L~s~Lt 217 (370)
.+.+...|.+++.++
T Consensus 205 ~~~~~~i~~i~~~~~ 219 (223)
T 1orq_C 205 SALTLLIGTVSNMFQ 219 (223)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999998887664
No 53
>1p7b_A Integral membrane channel and cytosolic domains; transmembrane helices, ION conduction, immunoglobulin fold, assembly; 3.65A {Burkholderia pseudomallei} SCOP: b.1.18.16 f.14.1.1 PDB: 2wll_B* 2wll_A*
Probab=94.36 E-value=0.089 Score=49.67 Aligned_cols=59 Identities=10% Similarity=0.077 Sum_probs=49.5
Q ss_pred CCCccchHHHHHHHhHhccCccceeeeeeccccCccccCc-ccchhhHHHHHHHHHHHHHHHHHhhcCCcccccccc
Q 040220 145 KDQIGTALWFNFSSILFAYGKEHVLHFIIMVNWKPIFGGR-IDSNLTRLVVVVWLFVVLILTSSYTASPSPMLTVQP 220 (370)
Q Consensus 145 ~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~R~l~~~w~~~~lil~~~Yta~L~s~Lt~~~ 220 (370)
..++.+++||++.++++.| ||+. |.+..+|++...+.++++++.+.-++.+++.++.+.
T Consensus 94 ~~s~~~a~yfs~vT~tTVG-----------------YGDi~P~t~~gr~~~~~~~l~G~~~~a~~ig~i~~~~~~~~ 153 (333)
T 1p7b_A 94 PPGFVGAFFFSVETLATVG-----------------YGDMHPQTVYAHAIATLEIFVGMSGIALSTGLVFARFARPR 153 (333)
T ss_dssp SSSTHHHHHHHTTTTTTCC-----------------CSCCCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCC
T ss_pred CCcHHHhHhhhheeeeecC-----------------CCCCcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3568899999999999875 3444 889999999999999999999999998888876554
No 54
>3un6_A Hypothetical protein saouhsc_00137; structural genomics, center for structural genomics of infec diseases, csgid; 2.01A {Staphylococcus aureus subsp}
Probab=93.99 E-value=0.23 Score=46.28 Aligned_cols=78 Identities=9% Similarity=0.058 Sum_probs=44.2
Q ss_pred ChHHHHHHhhcccccc----cchhHHHHhhcccceEEcCCCCCccc--eeee-------CCc-----chHHHHHHHHHhh
Q 040220 244 SDYNYQGEFGSNHIAG----PPYEKVFVSQYCRIYAATTPTYGFGG--LGFL-------SSP-----IAADFSEAILKLS 305 (370)
Q Consensus 244 ~~~~~~~~l~~g~~~a----~~~~~~~~~~~c~~~~~~~~~~~~~~--~~~a-------~sp-----l~~~in~~i~~l~ 305 (370)
+..+.+.+|.+|++|+ .|+......+...........+.+.. ..++ +.| +.+.++++...+.
T Consensus 190 ~~~~~~~al~~G~vDa~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~p~~v~~~~~a~~~a~~~~~ 269 (341)
T 3un6_A 190 SPAEMPAALSEHRITGYSVAEPFGALGEKLGKGKTLKHGDDVIPDAYCCVLVLRGELLDQHKDVAQAFVQDYKKSGFKMN 269 (341)
T ss_dssp CGGGHHHHHHTTSCSEEEEETTHHHHHHHSSCCEEEEEGGGTSTTCCCEEEEECHHHHHHCHHHHHHHHHHHHHHHHHTT
T ss_pred ChHHHHHHHHcCCCCEEEecCCHHHHHHhcCCeEEEEeccccCCCCceEEEEECHHHHHHCHHHHHHHHHHHHHHHHHHH
Confidence 3568889999999999 24443333333221222222222222 2233 233 6666777777788
Q ss_pred hcCchhHHHHhhcCCC
Q 040220 306 ENKKLKSLEYNEKELE 321 (370)
Q Consensus 306 e~G~~~~l~~~w~~~~ 321 (370)
+++.-.++..+|++..
T Consensus 270 ~~~~~~~~~~~~~~~~ 285 (341)
T 3un6_A 270 DRKQSVDIMTHHFKQS 285 (341)
T ss_dssp SHHHHHHHHHHHSSSC
T ss_pred hCHHHHHHHHHHhCcC
Confidence 8775557777787644
No 55
>3uif_A Sulfonate ABC transporter, periplasmic sulfonate- protein SSUA; structural genomics; 2.60A {Methylobacillus flagellatus}
Probab=93.66 E-value=0.34 Score=45.28 Aligned_cols=46 Identities=11% Similarity=-0.022 Sum_probs=36.8
Q ss_pred hhhhhccccccCCceeEEEeccccc----ccccceeeecccccccceEEEEeCCC
Q 040220 49 LMMRIRHEENFLRNYDSVVGDATIL----ADRAKIVEFTQPCAESRLSMIVPAKT 99 (370)
Q Consensus 49 li~~~~~~~L~~g~~Diai~~~tit----~eR~~~vdFS~P~~~~~~~ilv~~~~ 99 (370)
++.+ |.+|++|+++.+.+.. .++.+...++.++...+..+++++++
T Consensus 60 ~~~a-----l~~G~~D~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~lvv~~~s 109 (348)
T 3uif_A 60 INEG-----FASGKIDFGIYGDLPPIILNASKPTVQLVAPWGTTSNSYLVVPKNS 109 (348)
T ss_dssp HHHH-----HHTTCCCEEEEESHHHHHHHHHSCCEEEEEECCCCCCCEEEEETTC
T ss_pred HHHH-----HHcCCCCEEecCcHHHHHHHhCCCCEEEEEeccCCCceEEEEECCC
Confidence 7788 9999999999776654 56777777877888888888888754
No 56
>3ksx_A Nitrate transport protein; SSUA, alkanesulfonate-binding protein, periplasmic-binding P transport protein; HET: MPO; 1.70A {Xanthomonas axonopodis PV} PDB: 3e4r_A* 3ksj_A*
Probab=93.65 E-value=1.6 Score=40.08 Aligned_cols=58 Identities=17% Similarity=0.029 Sum_probs=33.5
Q ss_pred CCceEEE-Ee-hhhhhhhhccccccCCceeEEEeccccc-----ccccceeeecccccccceEEEEeCCC
Q 040220 37 CKGISIL-FF-FLQLMMRIRHEENFLRNYDSVVGDATIL-----ADRAKIVEFTQPCAESRLSMIVPAKT 99 (370)
Q Consensus 37 g~~~~i~-~~-~~~li~~~~~~~L~~g~~Diai~~~tit-----~eR~~~vdFS~P~~~~~~~ilv~~~~ 99 (370)
|.+.++. +. ..+++.+ |.+|++|+++.+.+.. ..+.-.+-.+.++...+..+++++.+
T Consensus 57 g~~v~~~~~~~~~~~~~a-----l~~G~~D~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~lvv~~~s 121 (324)
T 3ksx_A 57 RTKITWVEFPAGPQLLEA-----LNVGSIDLGGAGDIPPLFAQAAGADLLYVGWVPPTPKAETILVPSKS 121 (324)
T ss_dssp TSEEEEEEESSHHHHHHH-----HHTTSCSEEEEESHHHHHHHHTTCCEEEEEEECCCGGGEEEEEETTC
T ss_pred CCceEEEECCCHHHHHHH-----HHCCCCCEEeecCHHHHHHHhcCCCEEEEEEecCCCCceEEEEeCCC
Confidence 6655532 21 3348888 9999999987764421 22222233333444456788888654
No 57
>1xl4_A Inward rectifier potassium channel; integral membrane protein, ION channel, inwardly rectifying channel, metal transport; 2.60A {Magnetospirillum magnetotacticum} SCOP: b.1.18.16 f.14.1.1 PDB: 1xl6_A* 2wlh_A 2wli_B 2wlj_A* 2wlk_A* 2wlm_A 2wlo_A 2wln_A 3zrs_A 2wli_A 2x6c_A* 2x6b_A* 2x6a_A*
Probab=93.46 E-value=0.14 Score=47.60 Aligned_cols=58 Identities=10% Similarity=0.064 Sum_probs=48.5
Q ss_pred CCCccchHHHHHHHhHhccCccceeeeeeccccCccccCc-ccchhhHHHHHHHHHHHHHHHHHhhcCCccccccc
Q 040220 145 KDQIGTALWFNFSSILFAYGKEHVLHFIIMVNWKPIFGGR-IDSNLTRLVVVVWLFVVLILTSSYTASPSPMLTVQ 219 (370)
Q Consensus 145 ~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~R~l~~~w~~~~lil~~~Yta~L~s~Lt~~ 219 (370)
..++.+++|+++.++++.| ||+. |.+..+|++...+.++++++.+..++.+++.++.+
T Consensus 80 ~~s~~~a~yfs~vT~tTvG-----------------YGDi~P~t~~gr~~~~~~~l~G~~~~a~~~g~v~~~~~~~ 138 (301)
T 1xl4_A 80 PGSFTDAFFFSVQTMATIG-----------------YGKLIPIGPLANTLVTLEALCGMLGLAVAASLIYARFTRP 138 (301)
T ss_dssp TTCHHHHHHHHHHHHTTCC-----------------CSSSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCC
T ss_pred cCCHHHHHHHhhhheeccC-----------------CCCCcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 3467899999999999875 3444 89999999999999999999999998888877654
No 58
>3ix1_A N-formyl-4-amino-5-aminomethyl-2-methylpyrimidine protein; periplasmic N-formyl-4-amino-5-aminomethyl-2-methylpyrimidin protein; HET: NFM; 2.40A {Bacillus halodurans c-125}
Probab=93.27 E-value=0.055 Score=49.51 Aligned_cols=74 Identities=4% Similarity=-0.090 Sum_probs=52.6
Q ss_pred ceEEeeHHHHHHHHh-cCCceEEE-Eehh-hhhhhhccccccCCceeEEEec-ccccc---cccceeeecccccccceEE
Q 040220 21 EYDGFCIELYYESQL-ACKGISIL-FFFL-QLMMRIRHEENFLRNYDSVVGD-ATILA---DRAKIVEFTQPCAESRLSM 93 (370)
Q Consensus 21 ~~~G~~idl~~~la~-lg~~~~i~-~~~~-~li~~~~~~~L~~g~~Diai~~-~tit~---eR~~~vdFS~P~~~~~~~i 93 (370)
.+.|+.+.+-+-+.+ .|++.++. .... .++.+ |.+|++|+++++ ..... ++...+.++.++...+..+
T Consensus 16 ~~~~~~va~~~g~~~~~Gl~v~~~~~~~~~~~~~~-----l~~G~~D~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~l 90 (302)
T 3ix1_A 16 VHTFLYVAIENGYFAEEGLDVDIVFPTNPTDPIQL-----TASGAIPLALSYQPDVILARSKDLPVVSVASVVRSPLNHV 90 (302)
T ss_dssp GGHHHHHHHHTTHHHHTTEEEEEECCSSTTHHHHH-----HHHTSCSEEEECHHHHHHHHHTTCCEEEEEEEECSCCEEE
T ss_pred ccHHHHHHHHcChHHHcCCcEEEecCCCCchHHHH-----HHCCCCCEEecCHHHHHHHHHCCCCEEEEEEEeccCCEEE
Confidence 568888888888888 87665532 2222 37778 999999999988 33333 3445677777777778888
Q ss_pred EEeCCC
Q 040220 94 IVPAKT 99 (370)
Q Consensus 94 lv~~~~ 99 (370)
++++++
T Consensus 91 ~~~~~s 96 (302)
T 3ix1_A 91 MFLAEQ 96 (302)
T ss_dssp EEEGGG
T ss_pred EEECCC
Confidence 888754
No 59
>3qsl_A Putative exported protein; unknown, structural genomics, PSI-biology, midwest center FO structural genomics, MCSG, unknown function; HET: MSE CIT; 2.00A {Bordetella bronchiseptica}
Probab=92.83 E-value=1.6 Score=39.88 Aligned_cols=61 Identities=16% Similarity=0.008 Sum_probs=44.7
Q ss_pred Hh-cCCceEEE-Ee-hhhhhhhhccccccCCceeEEEeccccc----ccccceeeecccccccceEEEEeCCC
Q 040220 34 QL-ACKGISIL-FF-FLQLMMRIRHEENFLRNYDSVVGDATIL----ADRAKIVEFTQPCAESRLSMIVPAKT 99 (370)
Q Consensus 34 a~-lg~~~~i~-~~-~~~li~~~~~~~L~~g~~Diai~~~tit----~eR~~~vdFS~P~~~~~~~ilv~~~~ 99 (370)
.+ .|++.++. +. ...++.+ |.+|++|+++++.... .++.+...++.++...+..+++++++
T Consensus 59 ~~~~g~~v~~~~~~~~~~~~~~-----l~~G~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 126 (346)
T 3qsl_A 59 FKDEGLDVSIADFAGGSKALQA-----VVGGSADVVSGAFEHTLSLQAKGQFYRAFALQGRAPMIGVGVSKKN 126 (346)
T ss_dssp HHHTTCEEEEEECSSHHHHHHH-----HHTTSCSEEEEETHHHHHHHHTTCCEEEEEESBSSCCEEEEEETTT
T ss_pred hHhhCCeEEEEecCChHHHHHH-----HHCCCCCEEccchHHHHHHHhCCCCeEEEEecccCCCcEEEEecCc
Confidence 34 66665543 11 3348888 9999999999887665 67778888888877778888888754
No 60
>2qks_A KIR3.1-prokaryotic KIR channel chimera; G-protein gated inward rectifier, potassium channel selectivity filter, metal transport; HET: BNG; 2.20A {Burkholderia xenovorans}
Probab=92.47 E-value=0.2 Score=46.92 Aligned_cols=57 Identities=12% Similarity=0.184 Sum_probs=48.8
Q ss_pred CccchHHHHHHHhHhccCccceeeeeeccccCccccCc-ccchhhHHHHHHHHHHHHHHHHHhhcCCcccccccc
Q 040220 147 QIGTALWFNFSSILFAYGKEHVLHFIIMVNWKPIFGGR-IDSNLTRLVVVVWLFVVLILTSSYTASPSPMLTVQP 220 (370)
Q Consensus 147 ~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~R~l~~~w~~~~lil~~~Yta~L~s~Lt~~~ 220 (370)
++.+++||++.++++.| ||+. |.+..+|++...+.++++++.+.-++.+++.++.+.
T Consensus 78 s~~~a~y~s~vT~tTVG-----------------YGDi~P~t~~gr~~~~~~~l~G~~~~a~~~g~i~~~~~~~~ 135 (321)
T 2qks_A 78 GFGGAFFFSVETLATVG-----------------YGDMHPQTVYAHWIATLEIFVGMSSIALATGCAFIKMSQPK 135 (321)
T ss_dssp THHHHHHHHHHHHTTCC-----------------CCSSCBCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCC
T ss_pred chhheeeeeeEEecccc-----------------CCCcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67899999999999875 3444 899999999999999999999999998888876543
No 61
>3beh_A MLL3241 protein; transmembrane protein, membrane protein; HET: LDA; 3.10A {Mesorhizobium loti} PDB: 2zd9_A*
Probab=92.43 E-value=0.088 Score=49.81 Aligned_cols=74 Identities=11% Similarity=0.156 Sum_probs=56.3
Q ss_pred HHHHHHHHhccccCCCCCCCCCCCCccchHHHHHHHhHhccCccceeeeeeccccCccccC-cccchhhHHHHHHHHHHH
Q 040220 123 VNTRFVVWFPEHQRNSEFNGPRKDQIGTALWFNFSSILFAYGKEHVLHFIIMVNWKPIFGG-RIDSNLTRLVVVVWLFVV 201 (370)
Q Consensus 123 ~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~R~l~~~w~~~~ 201 (370)
++.+.+.+.+++..+++ .-.++.+++|+++.++++.| ||+ .|.++.+|++...+++++
T Consensus 141 ~~~a~~~~~~e~~~~~~----~f~~~~~s~y~~~~t~ttvG-----------------ygd~~p~t~~~~~~~~~~~~~g 199 (355)
T 3beh_A 141 FAVALAAYVIERDIQPE----KFGSIPQAMWWAVVTLSTTG-----------------YGDTIPQSFAGRVLAGAVMMSG 199 (355)
T ss_dssp HHHHHHHHHHHTTTCHH----HHSSHHHHHHHHHHHHTTCC-----------------CSSSCCCSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhcCCCCc----ccccHHHHHHHHHhheeecC-----------------CCCCCCCChhHHHHHHHHHHHH
Confidence 34466677777654321 11357799999999999765 233 489999999999999999
Q ss_pred HHHHHHhhcCCccccc
Q 040220 202 LILTSSYTASPSPMLT 217 (370)
Q Consensus 202 lil~~~Yta~L~s~Lt 217 (370)
+++.+...+.+++.++
T Consensus 200 ~~~~~~~~~~i~~~~~ 215 (355)
T 3beh_A 200 IGIFGLWAGILATGFY 215 (355)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999999998887764
No 62
>2r9r_B Paddle chimera voltage gated potassium channel KV; voltage sensor, voltage dependent, ION CH shaker, membrane protein, eukaryotic; HET: NAP PGW; 2.40A {Rattus norvegicus} PDB: 3lnm_B* 3lut_B* 2a79_B*
Probab=87.22 E-value=0.92 Score=45.28 Aligned_cols=54 Identities=11% Similarity=0.108 Sum_probs=44.3
Q ss_pred CCccchHHHHHHHhHhccCccceeeeeeccccCccccC-cccchhhHHHHHHHHHHHHHHHHHhhcCCcccc
Q 040220 146 DQIGTALWFNFSSILFAYGKEHVLHFIIMVNWKPIFGG-RIDSNLTRLVVVVWLFVVLILTSSYTASPSPML 216 (370)
Q Consensus 146 ~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~R~l~~~w~~~~lil~~~Yta~L~s~L 216 (370)
.++.+++|+++.++++.+ ||+ .|.+..+|++.+.++++++++.+...|.+++.+
T Consensus 374 ~s~~~a~y~~~vT~TTvG-----------------YGDi~P~t~~gr~f~~~~~l~G~~~l~l~iavI~~~f 428 (514)
T 2r9r_B 374 PSIPDAFWWAVVSMTTVG-----------------YGDMVPTTIGGKIVGSLCAIAGVLTIALPVPVIVSNF 428 (514)
T ss_dssp SSHHHHHHHHHHHHTTCC-----------------CSSSCCCSHHHHHHHHHHHHHHHHHHHTTHHHHHHHH
T ss_pred cchhhhhheeeeEEEecc-----------------cCCCCCCCcchHhhehhHHHHHHHHHHHHHHHHHHHH
Confidence 457899999999998764 223 478899999999999999999999888777644
No 63
>1lnq_A MTHK channels, potassium channel related protein; rossman fold, helix bundle, membrane protein; 3.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.2.1.9 d.286.1.1 f.14.1.1 PDB: 3rbz_A
Probab=86.47 E-value=0.082 Score=49.62 Aligned_cols=57 Identities=12% Similarity=0.129 Sum_probs=45.5
Q ss_pred CccchHHHHHHHhHhccCccceeeeeeccccCccccC-cccchhhHHHHHHHHHHHHHHHHHhhcCCcccccccc
Q 040220 147 QIGTALWFNFSSILFAYGKEHVLHFIIMVNWKPIFGG-RIDSNLTRLVVVVWLFVVLILTSSYTASPSPMLTVQP 220 (370)
Q Consensus 147 ~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~R~l~~~w~~~~lil~~~Yta~L~s~Lt~~~ 220 (370)
++.+++|+++.++++.| ||+ .|.+..+|++...|.++++++.+...+.+++.++...
T Consensus 45 ~~~~a~y~~~~t~tTvG-----------------yGd~~p~t~~~r~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 102 (336)
T 1lnq_A 45 SWTVSLYWTFVTIATVG-----------------YGDYSPSTPLGMYFTVTLIVLGIGTFAVAVERLLEFLINRE 102 (336)
T ss_dssp CSSTTHHHHHHHHTTCC-----------------CSSCCCCCSSHHHHHTHHHHTTSTTTTTHHHHHTTTC----
T ss_pred CHHHHHHHHHHHhhccc-----------------CCCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57789999999999775 233 4889999999999999999999998888888876543
No 64
>4gx0_A TRKA domain protein; membrane protein, ION channel, ADP binding, NAD binding, MEM transport protein; HET: MAL GLC; 2.60A {Geobacter sulfurreducens} PDB: 4gx1_A* 4gx2_A* 4gx5_A 4gvl_A*
Probab=82.87 E-value=0.98 Score=45.39 Aligned_cols=48 Identities=10% Similarity=0.136 Sum_probs=39.7
Q ss_pred CccchHHHHHHHhHhccCccceeeeeeccccCccccCc-ccchhhHHHHHHHHHHHHHHHHHhhcC
Q 040220 147 QIGTALWFNFSSILFAYGKEHVLHFIIMVNWKPIFGGR-IDSNLTRLVVVVWLFVVLILTSSYTAS 211 (370)
Q Consensus 147 ~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~R~l~~~w~~~~lil~~~Yta~ 211 (370)
++.+++||++.++++.| ||+. |.+..+|++...|.++++.+.+...+.
T Consensus 51 ~~~~~~y~~~~t~tTvG-----------------ygd~~p~~~~~~~~~~~~~~~g~~~~~~~~~~ 99 (565)
T 4gx0_A 51 SFMAGIYWTITVMTTLG-----------------FGDITFESDAGYLFASIVTVSGVIFLDIILPF 99 (565)
T ss_dssp CHHHHHHHHHHHHTTCC-----------------CCSSCCCSHHHHHHHHHHHHHHHHHHHTHHHH
T ss_pred chhhhhheeeeeeeeec-----------------CCCcCCCCccHHHHHHHHHHHHHHHHHHHHHH
Confidence 57899999999999875 3444 889999999999999998887766665
No 65
>4ddd_A Immunogenic protein; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, immune system; 1.90A {Ehrlichia chaffeensis}
Probab=82.46 E-value=2 Score=39.89 Aligned_cols=76 Identities=8% Similarity=-0.040 Sum_probs=47.4
Q ss_pred CceEEeeHHHHHHHHh-cC--CceEEEEeh----hhhhhhhccccccCCceeEEEecccccc---------c---cccee
Q 040220 20 NEYDGFCIELYYESQL-AC--KGISILFFF----LQLMMRIRHEENFLRNYDSVVGDATILA---------D---RAKIV 80 (370)
Q Consensus 20 ~~~~G~~idl~~~la~-lg--~~~~i~~~~----~~li~~~~~~~L~~g~~Diai~~~tit~---------e---R~~~v 80 (370)
+.+..+...|.+.+++ +. .+.+++.+- ...++. |.+|++|++++...... + ..+.+
T Consensus 43 G~~~~~~~~la~~l~~~~~~~~g~~v~v~~~~g~~~~i~~-----l~~g~~D~~~~~~~~~~~a~~g~~~f~~~~~~~d~ 117 (327)
T 4ddd_A 43 GVYYPIGGSICRFIASDYGKDNKIICSISSTTGSVYNLNS-----IRYSNMDISIVQSDLEYYAYNGLGFYEKMLPMDNL 117 (327)
T ss_dssp SSHHHHHHHHHHHHHHHHGGGTSEEEEEECCCCHHHHHHH-----HHTTSCSEEEEEHHHHHHHHHTCGGGTTSCCCTTE
T ss_pred CHHHHHHHHHHHHHHhccCCCCCeEEEEEecCcHHHHHHH-----HHcCCCcEEEECcHHHHHHHhCcCcccccCCCcch
Confidence 4555666666666665 30 123333332 226777 99999999998765432 1 23445
Q ss_pred eecccccccceEEEEeCCCC
Q 040220 81 EFTQPCAESRLSMIVPAKTE 100 (370)
Q Consensus 81 dFS~P~~~~~~~ilv~~~~~ 100 (370)
.+..+++.....++++++++
T Consensus 118 ~~v~~~~~~~~~lvv~~ds~ 137 (327)
T 4ddd_A 118 RMLASLHKEYLTIVVKKSSN 137 (327)
T ss_dssp EEEEEEEEEEEEEEEETTSS
T ss_pred hehhccCCccEEEEEECCCC
Confidence 56667888888899987654
No 66
>3ukm_A Potassium channel subfamily K member 1; membrane protein, eukaryotic, two-pore DO potassium channel, K2P channel, membrane; HET: UND; 3.40A {Homo sapiens}
Probab=81.94 E-value=1.3 Score=40.52 Aligned_cols=57 Identities=14% Similarity=0.159 Sum_probs=44.3
Q ss_pred CccchHHHHHHHhHhccCccceeeeeeccccCccccCc-ccch-------hhHHHHHHHHHHHHHHHHHhhcCCcccccc
Q 040220 147 QIGTALWFNFSSILFAYGKEHVLHFIIMVNWKPIFGGR-IDSN-------LTRLVVVVWLFVVLILTSSYTASPSPMLTV 218 (370)
Q Consensus 147 ~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-------~~R~l~~~w~~~~lil~~~Yta~L~s~Lt~ 218 (370)
.+.+++|+++.++.+.+- |+- |.+. .+|++...|.++++.+.+...+.++..+..
T Consensus 201 s~~da~y~~~iTltTvGy-----------------GD~~p~t~~~~~~~~l~r~~~~~~il~Gl~~~~~~~~~i~~~~~~ 263 (280)
T 3ukm_A 201 NFLESFYFCFISLSTIGL-----------------GDYVPGEGYNQKFRELYKIGITCYLLLGLIAMLVVLETFCELHEL 263 (280)
T ss_dssp CHHHHHHHHHHHHTTCCC-----------------CSCCSSCSSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHTSHHH
T ss_pred chhhhhhheeeeeecccC-----------------CCCCCCCCcccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467999999999998752 222 4333 469999999999999999998888887765
Q ss_pred cc
Q 040220 219 QP 220 (370)
Q Consensus 219 ~~ 220 (370)
.+
T Consensus 264 ~~ 265 (280)
T 3ukm_A 264 KK 265 (280)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 67
>2f5x_A BUGD; periplasmic binding protein, transport protein; 1.72A {Bordetella pertussis tohama I}
Probab=80.40 E-value=13 Score=34.31 Aligned_cols=77 Identities=9% Similarity=0.072 Sum_probs=47.2
Q ss_pred hcCChHHHHHHhhccccccc----chhHHHHh-hcccceEEcCC----------CCCcc---------ceeee---C--C
Q 040220 241 NFGSDYNYQGEFGSNHIAGP----PYEKVFVS-QYCRIYAATTP----------TYGFG---------GLGFL---S--S 291 (370)
Q Consensus 241 ~~~~~~~~~~~l~~g~~~a~----~~~~~~~~-~~c~~~~~~~~----------~~~~~---------~~~~a---~--s 291 (370)
.|....+++.+|..|++|+. .....+++ ...+.+.+.++ ++... .+++. + .
T Consensus 170 py~G~~~a~~aL~~G~VD~~~~~~~~~~~~i~~g~lr~Lav~~~~r~~~~pdvPt~~E~G~~~~~~~~w~gl~ap~g~p~ 249 (312)
T 2f5x_A 170 PYKGTAPAMNDLLGKQVDLMCDQTTNTTQQITSGKVKAYAVTSLKRVPTLPDLPTMDESGYKGFEVGIWHGMWAPKGTPK 249 (312)
T ss_dssp ECSSHHHHHHHHHTTSSCEEEEEHHHHHHHHHTTSSEEEEECSSSCCTTSTTSCBTTTTTCTTCCCEEEEEEEEETTCCH
T ss_pred ccCChHHHHHHHHcCCccEEEechHHHHHHHHcCCeEEEEEcCccchhhcCCCCCHhhcCCCCeeEEEEEEEEEcCCCCH
Confidence 46777899999999999982 11212222 22222222211 11111 13443 4 3
Q ss_pred cchHHHHHHHHHhhhcCchhHHHHhh
Q 040220 292 PIAADFSEAILKLSENKKLKSLEYNE 317 (370)
Q Consensus 292 pl~~~in~~i~~l~e~G~~~~l~~~w 317 (370)
+..+++++++.++.+++.+++..+++
T Consensus 250 ~vv~~l~~al~~~~~~p~~~~~~~~~ 275 (312)
T 2f5x_A 250 PVVDKLVKSLQAGLADPKFQERMKQL 275 (312)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHcCHHHHHHHHHC
Confidence 58999999999999999988776665
No 68
>3um7_A Potassium channel subfamily K member 4; potassium ION channel, metal transport; 3.31A {Homo sapiens}
Probab=79.17 E-value=1.1 Score=41.74 Aligned_cols=52 Identities=21% Similarity=0.324 Sum_probs=43.7
Q ss_pred ccchHHHHHHHhHhccCccceeeeeeccccCccccCc-ccchhhHHHHHHHHHHHHHHHHHhhcCCcccc
Q 040220 148 IGTALWFNFSSILFAYGKEHVLHFIIMVNWKPIFGGR-IDSNLTRLVVVVWLFVVLILTSSYTASPSPML 216 (370)
Q Consensus 148 ~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~R~l~~~w~~~~lil~~~Yta~L~s~L 216 (370)
+.+++|+++.++++.| ||+. |.+..||++.+.+.++++.+.....+.++..+
T Consensus 116 ~~~a~yf~~~t~tTvG-----------------YGdi~P~T~~gk~~~i~~~l~Gi~~~~~~~~~i~~~l 168 (309)
T 3um7_A 116 LGSAFFFSGTIITTIG-----------------YGNVALRTDAGRLFCIFYALVGIPLFGILLAGVGDRL 168 (309)
T ss_dssp HHHHHHHHHHHHTSCC-----------------CCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhHhhheeeeecc-----------------cCCCCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5578999999998775 4444 89999999999999999999998888777655
No 69
>1zbm_A Hypothetical protein AF1704; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.30A {Archaeoglobus fulgidus} SCOP: c.94.1.1
Probab=76.67 E-value=8.2 Score=34.22 Aligned_cols=30 Identities=17% Similarity=0.080 Sum_probs=20.1
Q ss_pred hhhhhccccccCCceeEEEecccccccccceeeec
Q 040220 49 LMMRIRHEENFLRNYDSVVGDATILADRAKIVEFT 83 (370)
Q Consensus 49 li~~~~~~~L~~g~~Diai~~~tit~eR~~~vdFS 83 (370)
++.+ |.+|++|+++.+......+.+.+++.
T Consensus 50 ~~~~-----l~~G~~D~~~~~~~~~~~~~~~~~~~ 79 (280)
T 1zbm_A 50 LNRK-----AFNAEYEVTAISAHAYALLDDKYRIL 79 (280)
T ss_dssp HHHH-----GGGTCCSEEEEEHHHHTTSTTTEEEC
T ss_pred HHHH-----HHcCCCCEEEECHHHHHHhcCCCcEE
Confidence 7788 99999999986544444444444443
No 70
>2dvz_A BUGE, putative exported protein; periplamsic binding proteins, carboxylate binding, glutamate, transport protein; HET: GLU; 2.30A {Bordetella pertussis}
Probab=76.33 E-value=12 Score=34.57 Aligned_cols=77 Identities=13% Similarity=0.081 Sum_probs=47.0
Q ss_pred hcCChHHHHHHhhccccccc----chh-HHHHhhcccceEEcCC----------CCCc---------cceeee---C--C
Q 040220 241 NFGSDYNYQGEFGSNHIAGP----PYE-KVFVSQYCRIYAATTP----------TYGF---------GGLGFL---S--S 291 (370)
Q Consensus 241 ~~~~~~~~~~~l~~g~~~a~----~~~-~~~~~~~c~~~~~~~~----------~~~~---------~~~~~a---~--s 291 (370)
.|....+++.+|..|++|+. ... .+......+.+.+.++ ++.. ..+++. + .
T Consensus 174 py~G~~~a~~al~~G~vD~~~~~~~~~~~~i~~g~lr~Lav~~~~r~~~~pdvPt~~e~G~~~~~~~~w~gl~ap~g~p~ 253 (314)
T 2dvz_A 174 PYKGSGPAVADAVGGQIELIFDNLPSSMPQIQAGKLRAMAIAWPTRIDAIKDVPTFADAGFPVLNQPVWYGLLAPKGTPM 253 (314)
T ss_dssp ECSSHHHHHHHHHHTSSSEEEEEHHHHHHHHHTTSSEEEEEESSSCCGGGTTSCBTTTTTCGGGCCCEEEEEEEETTCCH
T ss_pred ccCCHHHHHHHHHcCCceEEEEcHHHHHHHHHcCCEEEEEecCccccccCCCCCCHHhcCCCceEEeEEEEEEEcCCCCH
Confidence 46777899999999999982 111 2222222222222211 1111 113443 4 3
Q ss_pred cchHHHHHHHHHhhhcCchhHHHHhh
Q 040220 292 PIAADFSEAILKLSENKKLKSLEYNE 317 (370)
Q Consensus 292 pl~~~in~~i~~l~e~G~~~~l~~~w 317 (370)
+..+++++++.++.+++.+++..+++
T Consensus 254 ~vv~~l~~al~~~~~~p~~~~~~~~~ 279 (314)
T 2dvz_A 254 DVVNKLRDAAVVALKDPKVIKALDDQ 279 (314)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCHHHHHHHHHC
Confidence 68999999999999999988877665
No 71
>3um7_A Potassium channel subfamily K member 4; potassium ION channel, metal transport; 3.31A {Homo sapiens}
Probab=68.20 E-value=4.3 Score=37.58 Aligned_cols=54 Identities=15% Similarity=0.172 Sum_probs=40.1
Q ss_pred CccchHHHHHHHhHhccCccceeeeeeccccCccccCc-ccchhhH------HHHHHHHHHHHHHHHHhhcCCccccc
Q 040220 147 QIGTALWFNFSSILFAYGKEHVLHFIIMVNWKPIFGGR-IDSNLTR------LVVVVWLFVVLILTSSYTASPSPMLT 217 (370)
Q Consensus 147 ~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~R------~l~~~w~~~~lil~~~Yta~L~s~Lt 217 (370)
.+.+++|+++.++.+.+- |+- |.+..+| ++...|.++++.+.++-.+.++..+.
T Consensus 224 ~~~da~y~~~vTltTvGy-----------------Gd~~p~t~~g~~~~~y~~~~~~~il~Gl~~~a~~~~~i~~~~~ 284 (309)
T 3um7_A 224 SKLEAIYFVIVTLTTVGF-----------------GDYVAGADPRQDSPAYQPLVWFWILLGLAYFASVLTTIGNWLR 284 (309)
T ss_dssp CHHHHHHHHHHHHTTCCC-----------------SSCCTTCCTTCCCSTHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHhheecccc-----------------CCCCCCCccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 367899999999998752 333 5555555 68999999999998887776666544
No 72
>3sya_A G protein-activated inward rectifier potassium CH; ION channel, potassium channel, inward rectification, sodium PIP2 binding, G protein binding; HET: PIO; 2.98A {Mus musculus} PDB: 3syo_A 3syc_A 3syp_A 3syq_A*
Probab=64.44 E-value=18 Score=33.85 Aligned_cols=60 Identities=12% Similarity=0.098 Sum_probs=49.2
Q ss_pred CCccchHHHHHHHhHhccCccceeeeeeccccCccccCc-cc--chhhHHHHHHHHHHHHHHHHHhhcCCccccccccCC
Q 040220 146 DQIGTALWFNFSSILFAYGKEHVLHFIIMVNWKPIFGGR-ID--SNLTRLVVVVWLFVVLILTSSYTASPSPMLTVQPLR 222 (370)
Q Consensus 146 ~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~--~~~~R~l~~~w~~~~lil~~~Yta~L~s~Lt~~~~~ 222 (370)
.++.+++||++.++++.| ||.. |. .+.+|+++..-.+.++++.+.-++-+.+.++.+...
T Consensus 90 ~sf~~af~fSv~T~TTvG-----------------YGd~~p~~~~~~g~~l~~~~~l~G~~l~a~~~giv~ak~srp~~r 152 (340)
T 3sya_A 90 NGFVSAFLFSIETETTIG-----------------YGYRVITDKCPEGIILLLIQSVLGSIVNAFMVGCMFVKISQPKKR 152 (340)
T ss_dssp CSTTHHHHHHHHHHSCCC-----------------CSSSCBCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCGGGG
T ss_pred cCHHHHHhhhheeeeeec-----------------CCCccCcCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhc
Confidence 457899999999999875 4544 53 688999999999999999999999888887765544
No 73
>3ukm_A Potassium channel subfamily K member 1; membrane protein, eukaryotic, two-pore DO potassium channel, K2P channel, membrane; HET: UND; 3.40A {Homo sapiens}
Probab=64.32 E-value=4 Score=37.28 Aligned_cols=53 Identities=11% Similarity=0.178 Sum_probs=43.1
Q ss_pred CccchHHHHHHHhHhccCccceeeeeeccccCccccCc-ccchhhHHHHHHHHHHHHHHHHHhhcCCcccc
Q 040220 147 QIGTALWFNFSSILFAYGKEHVLHFIIMVNWKPIFGGR-IDSNLTRLVVVVWLFVVLILTSSYTASPSPML 216 (370)
Q Consensus 147 ~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~R~l~~~w~~~~lil~~~Yta~L~s~L 216 (370)
++.+++|+++.++++.+ ||+- |.+..||++.+.+.++++.+...+.+++...+
T Consensus 93 ~~~~a~yf~~~t~tTvG-----------------yGd~~P~T~~Gk~f~~~~~l~Gi~~~~~~~~~~~~~l 146 (280)
T 3ukm_A 93 DFTSALFFASTVLSTTG-----------------YGHTVPLSDGGKAFCIIYSVIGIPFTLLFLTAVVQRI 146 (280)
T ss_dssp SHHHHHHHHHHHHTTCC-----------------CCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred Chhcchhheeeeeeccc-----------------cCCcCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36688999999999875 3444 89999999999999999988888777766443
No 74
>2y7p_A LYSR-type regulatory protein; transcription regulator, DNA-binding, transcription, transcr factor, transcription regulation; HET: SAL PEU; 1.85A {Burkholderia SP} PDB: 2y7k_A* 2y84_A 2y7w_A 2y7r_A
Probab=49.37 E-value=22 Score=29.72 Aligned_cols=64 Identities=13% Similarity=-0.140 Sum_probs=40.9
Q ss_pred HHHHHHHHh-cCCceEEEEe---hhhhhhhhccccccCCceeEEEecccccccccceeeecccccccceEEEEeCCCC
Q 040220 27 IELYYESQL-ACKGISILFF---FLQLMMRIRHEENFLRNYDSVVGDATILADRAKIVEFTQPCAESRLSMIVPAKTE 100 (370)
Q Consensus 27 idl~~~la~-lg~~~~i~~~---~~~li~~~~~~~L~~g~~Diai~~~tit~eR~~~vdFS~P~~~~~~~ilv~~~~~ 100 (370)
.+++..+.+ .. +.+++.. ..+++.. |.+|++|++++.... ....+++ .|++...+.++++++.+
T Consensus 24 p~~l~~f~~~~P-~v~l~l~~~~~~~l~~~-----L~~g~iDl~i~~~~~---~~~~l~~-~~l~~~~~~~v~~~~hp 91 (218)
T 2y7p_A 24 PPLMEALAQRAP-HIQISTLRPNAGNLKED-----MESGAVDLALGLLPE---LQTGFFQ-RRLFRHRYVCMFRKDHP 91 (218)
T ss_dssp HHHHHHHHHHCT-TCEEEEECCCTTTHHHH-----HHHTSSCEEEECCTT---CCTTEEE-EEEEEECEEEEEETTCS
T ss_pred HHHHHHHHHHCC-CCEEEEEeCCcccHHHH-----HhCCCceEEEecCCC---CCcceeE-EEeeeccEEEEEcCCCC
Confidence 455566666 43 3334333 2337888 999999999974322 2233554 48899999999987653
No 75
>3oxn_A Putative transcriptional regulator, LYSR family; structural genomics, PSI-2, protein structure initiative; 2.70A {Vibrio parahaemolyticus}
Probab=47.30 E-value=35 Score=28.65 Aligned_cols=64 Identities=9% Similarity=-0.065 Sum_probs=41.8
Q ss_pred eHHHHHHHHh-cCCceEEEEe---hhhhhhhhccccccCCceeEEEecccccccccceeeecccccccceEEEEeCCC
Q 040220 26 CIELYYESQL-ACKGISILFF---FLQLMMRIRHEENFLRNYDSVVGDATILADRAKIVEFTQPCAESRLSMIVPAKT 99 (370)
Q Consensus 26 ~idl~~~la~-lg~~~~i~~~---~~~li~~~~~~~L~~g~~Diai~~~tit~eR~~~vdFS~P~~~~~~~ilv~~~~ 99 (370)
-.+++..+.+ .. +.+++.. ...++.. |.+|++|++++.... ....+.+ .|+....+.+++++..
T Consensus 34 l~~~l~~f~~~~P-~i~l~~~~~~~~~~~~~-----l~~g~~Dl~i~~~~~---~~~~~~~-~~l~~~~~~~v~~~~h 101 (241)
T 3oxn_A 34 LPFALPRIYQEAP-NVSFNFLPLQHDRLSDQ-----LTYEGADLAICRPTG---PVEPLRS-EILGRVGVLCLLSKQH 101 (241)
T ss_dssp HHHHHHHHHHHCT-TCEEEEEECCGGGHHHH-----HHTSCCSEEEECCSS---CCTTEEE-EEEECCCEEEEEETTS
T ss_pred HHHHHHHHHHHCC-CCEEEEEECCcccHHHH-----HHcCCCCEEEecCCC---CCcccee-EEeecccEEEEEeCCC
Confidence 3456666666 43 3344333 2337888 999999999985433 3334444 4788899999998765
No 76
>3spc_A Inward-rectifier K+ channel KIR2.2; PIP, membrane protein, lipid, receptor, metal transport; HET: P8P; 2.45A {Gallus gallus} PDB: 3jyc_A* 3spi_A* 3sph_A* 3spj_A 3spg_A*
Probab=45.73 E-value=52 Score=30.76 Aligned_cols=60 Identities=20% Similarity=0.202 Sum_probs=49.6
Q ss_pred CCccchHHHHHHHhHhccCccceeeeeeccccCccccCc-c--cchhhHHHHHHHHHHHHHHHHHhhcCCccccccccCC
Q 040220 146 DQIGTALWFNFSSILFAYGKEHVLHFIIMVNWKPIFGGR-I--DSNLTRLVVVVWLFVVLILTSSYTASPSPMLTVQPLR 222 (370)
Q Consensus 146 ~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~--~~~~~R~l~~~w~~~~lil~~~Yta~L~s~Lt~~~~~ 222 (370)
.++.+++||++.++++.| ||.. | .++.+++++..-.+.++++.+.-++-+.+.++.+...
T Consensus 93 ~sf~~af~fSv~T~TTvG-----------------YGd~~p~~~~~~~~~l~~~~~l~G~~l~a~~~giv~ak~srp~~r 155 (343)
T 3spc_A 93 NGFVAAFLFSIETQTTIG-----------------YGFRCVTEECPLAVFMVVVQSIVGCIIDSFMIGAIMAKMARPKKR 155 (343)
T ss_dssp CSHHHHHHHHHHHHSCCC-----------------CSSSEECSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCSCC
T ss_pred CCHHHHhheeeeeeEeec-----------------CCCccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhh
Confidence 457789999999999875 4444 3 5889999999999999999999999888888776655
No 77
>4ab5_A Transcriptional regulator, LYSR family; transcription factors; 2.51A {Neisseria meningitidis serogroup B} PDB: 4ab6_A
Probab=44.07 E-value=30 Score=28.37 Aligned_cols=65 Identities=9% Similarity=-0.028 Sum_probs=42.9
Q ss_pred eeHHHHHHHHh-cCCceEEEEeh---hhhhhhhccccccCCceeEEEecccccccccceeeecccccccceEEEEeCCC
Q 040220 25 FCIELYYESQL-ACKGISILFFF---LQLMMRIRHEENFLRNYDSVVGDATILADRAKIVEFTQPCAESRLSMIVPAKT 99 (370)
Q Consensus 25 ~~idl~~~la~-lg~~~~i~~~~---~~li~~~~~~~L~~g~~Diai~~~tit~eR~~~vdFS~P~~~~~~~ilv~~~~ 99 (370)
+-.+++..+.+ .. +.++++.. .++... |.+|++|+++..-... ...+.+ .++....+.+++++..
T Consensus 22 ~l~~~l~~f~~~~P-~i~i~i~~~~~~~~~~~-----l~~g~~Di~i~~~~~~---~~~~~~-~~l~~~~~~~v~~~~~ 90 (222)
T 4ab5_A 22 WLMPAMGEFRPMWP-QVELDIVSGFQADPVGL-----LLQHRADLAIVSEAEK---QNGISF-QPLFAYEMVGICAPDH 90 (222)
T ss_dssp HHHHHHHHHHHHST-TEEEEEECCCCSCTHHH-----HHTTSCSEEEESCCCC---CTTEEE-EEEEEEEEEEEECTTS
T ss_pred HHHHHHHHHHHHCC-CcEEEEecCCHHHHHHH-----HHcCCcCEEEecCCCC---cCCeEE-EEeecCcEEEEecCCC
Confidence 34566667766 53 44444443 337888 9999999999854433 233443 4788889999988765
No 78
>1twy_A ABC transporter, periplasmic substrate-binding PR; nysgxrc target, structural genomics, protei structure initiative, PSI; 1.65A {Vibrio cholerae o1 biovar eltor} SCOP: c.94.1.1
Probab=40.62 E-value=31 Score=29.82 Aligned_cols=66 Identities=9% Similarity=-0.106 Sum_probs=38.8
Q ss_pred HHHHHHHh-c-CCceEEEEe-hhhhhhhhccccccCCceeEEEeccccccccc-ceeeecccccccceEEEEeCCC
Q 040220 28 ELYYESQL-A-CKGISILFF-FLQLMMRIRHEENFLRNYDSVVGDATILADRA-KIVEFTQPCAESRLSMIVPAKT 99 (370)
Q Consensus 28 dl~~~la~-l-g~~~~i~~~-~~~li~~~~~~~L~~g~~Diai~~~tit~eR~-~~vdFS~P~~~~~~~ilv~~~~ 99 (370)
++++.+.+ . +.++++... ..+++.. |.+|++|+++..-....++. +.+.+ .|+....+.++++++.
T Consensus 44 ~~l~~f~~~~P~i~v~i~~~~~~~~~~~-----l~~g~~Di~i~~~~~~~~~~~~~~~~-~~l~~~~~~~v~~~~~ 113 (290)
T 1twy_A 44 VLAEKYNQQHPETYVAVQGVGSTAGISL-----LKKGVADIAMTSRYLTESEAQNTLHT-FTLAFDGLAIVVNQAN 113 (290)
T ss_dssp HHHHHHHHHCTTCEEEEEESCHHHHHHH-----HHTTSCSEEEESSCCCTTTCCTTCEE-EEEEEEEEEEEECTTC
T ss_pred HHHHHHHhhCCCceEEEEecCcHHHHHH-----HhcCCCcEEEecCCCchhhhhcCceE-EEEEeeeEEEEECCCC
Confidence 34445555 4 333332222 2337788 99999999997654433211 22333 4788888888888654
No 79
>3ho7_A OXYR; beta-alpha-barrels, DNA-binding, transcription, transcriptio regulation; 1.58A {Porphyromonas gingivalis}
Probab=38.04 E-value=41 Score=27.73 Aligned_cols=65 Identities=8% Similarity=-0.080 Sum_probs=43.0
Q ss_pred eeHHHHHHHHh-cCCceEEEEe---hhhhhhhhccccccCCceeEEEecccccccccceeeecccccccceEEEEeCCC
Q 040220 25 FCIELYYESQL-ACKGISILFF---FLQLMMRIRHEENFLRNYDSVVGDATILADRAKIVEFTQPCAESRLSMIVPAKT 99 (370)
Q Consensus 25 ~~idl~~~la~-lg~~~~i~~~---~~~li~~~~~~~L~~g~~Diai~~~tit~eR~~~vdFS~P~~~~~~~ilv~~~~ 99 (370)
+-.+++..+.+ .. +.+++.. ..++... |.+|++|+++....... ..+.+ .++....+.+++++..
T Consensus 25 ~l~~~l~~~~~~~P-~v~i~~~~~~~~~~~~~-----l~~g~~Dl~i~~~~~~~---~~l~~-~~l~~~~~~~v~~~~h 93 (232)
T 3ho7_A 25 LLPRVFPIWKKELA-GLEIHVSEMQTSRCLAS-----LLSGEIDMAIIASKAET---EGLED-DLLYYEEFLGYVSRCE 93 (232)
T ss_dssp HHHHHHHHHHHHST-TEEEEEEECCHHHHHHH-----HHHTSCSEEEESSCCCC---TTEEE-EEEEEEEEEEEECTTS
T ss_pred hhHHHHHHHHHHCC-CcEEEEEeCCHHHHHHH-----HHcCCCCEEEEcCCCCC---CCeEE-EEecccCEEEEEcCCC
Confidence 34556666666 53 4444443 3347888 99999999998654443 33433 4888889999988764
No 80
>3jv9_A OXYR, transcriptional regulator, LYSR family; LYSR-type transcriptional regulator, LTTR, redox, structural genomics, OPPF; 2.39A {Neisseria meningitidis}
Probab=35.76 E-value=37 Score=27.58 Aligned_cols=66 Identities=12% Similarity=0.053 Sum_probs=42.1
Q ss_pred eeHHHHHHHHh-c-CCceEEEE-ehhhhhhhhccccccCCceeEEEecccccccccceeeecccccccceEEEEeCCC
Q 040220 25 FCIELYYESQL-A-CKGISILF-FFLQLMMRIRHEENFLRNYDSVVGDATILADRAKIVEFTQPCAESRLSMIVPAKT 99 (370)
Q Consensus 25 ~~idl~~~la~-l-g~~~~i~~-~~~~li~~~~~~~L~~g~~Diai~~~tit~eR~~~vdFS~P~~~~~~~ilv~~~~ 99 (370)
+-.+++..+.+ . +.++++.. ...++... |.+|++|+++....... ..+.+ .|+....+.+++++..
T Consensus 18 ~l~~~l~~~~~~~P~i~i~i~~~~~~~~~~~-----l~~g~~Dl~i~~~~~~~---~~~~~-~~l~~~~~~~v~~~~~ 86 (219)
T 3jv9_A 18 LLPKLIVSLRRTAPKMPLMLEENYTHTLTES-----LKRGDVDAIIVAEPFQE---PGIVT-EPLYDEPFFVIVPKGH 86 (219)
T ss_dssp HHHHHHHHHHHHSTTCCEEEEEECHHHHHHH-----HHHTSSSEEEEESSCCC---TTEEE-EEEEEEEEEEEEETTC
T ss_pred HHHHHHHHHHHHCCCcEEEEEeCCcHHHHHH-----HHcCCCCEEEEcCCCCC---CCeeE-EEeeeceEEEEEeCCC
Confidence 34456666666 4 33433322 23347888 99999999998654332 33433 4788889999988764
No 81
>3hhf_B Transcriptional regulator, LYSR family; transcription factor, structur genomics, oxford protein production facility, OPPF; 2.30A {Neisseria meningitidis serogroup B}
Probab=34.72 E-value=47 Score=26.85 Aligned_cols=62 Identities=11% Similarity=0.032 Sum_probs=39.2
Q ss_pred HHHHHHHHh-cCCceEEEEehhhhhhhhccccccCCceeEEEecccccccccceeeecccccccceEEEEeCC
Q 040220 27 IELYYESQL-ACKGISILFFFLQLMMRIRHEENFLRNYDSVVGDATILADRAKIVEFTQPCAESRLSMIVPAK 98 (370)
Q Consensus 27 idl~~~la~-lg~~~~i~~~~~~li~~~~~~~L~~g~~Diai~~~tit~eR~~~vdFS~P~~~~~~~ilv~~~ 98 (370)
.+++..+.+ .. +.+++....+.+.+ |.+|++|+++...... ...++ +.+++...+.+++++.
T Consensus 23 ~~~l~~f~~~~P-~v~l~i~~~~~~~~-----l~~g~~D~~i~~~~~~---~~~~~-~~~l~~~~~~~v~~~~ 85 (213)
T 3hhf_B 23 APLAAKFNERYP-HIRLSLVSSEGYIN-----LIERKVDIALRAGELD---DSGLR-ARHLFDSRFRVIASPE 85 (213)
T ss_dssp HHHHHHHHHHCT-TEEEEEECCSTTHH-----HHTTSSSEEEECC--C---CSSEE-EEEEEEECEEEEECHH
T ss_pred HHHHHHHHHHCC-CcEEEEEeCCcHHH-----HHhCCccEEEEEecCC---Cccce-EEeeecceEEEEeCHH
Confidence 456666666 43 44454443345556 8899999999754333 23343 3488889999998754
No 82
>1atg_A MODA, periplasmic molybdate-binding protein; tungstate, ABC transporter; 1.20A {Azotobacter vinelandii} SCOP: c.94.1.1
Probab=34.01 E-value=28 Score=28.84 Aligned_cols=68 Identities=7% Similarity=-0.083 Sum_probs=39.8
Q ss_pred HHHHHHHh-cCCceEEEEe-hhhhhhhhccccccCCc-eeEEEecccccccc---cceee--ecccccccceEEEEeCCC
Q 040220 28 ELYYESQL-ACKGISILFF-FLQLMMRIRHEENFLRN-YDSVVGDATILADR---AKIVE--FTQPCAESRLSMIVPAKT 99 (370)
Q Consensus 28 dl~~~la~-lg~~~~i~~~-~~~li~~~~~~~L~~g~-~Diai~~~tit~eR---~~~vd--FS~P~~~~~~~ilv~~~~ 99 (370)
++++...+ -|.+.++.+. -..++.. |.+|+ +|+++.+-....++ ...+. -..|+....+.++++++.
T Consensus 16 ~~~~~F~~~p~i~v~~~~~~s~~l~~~-----l~~g~~~Dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlv~~~~~ 90 (231)
T 1atg_A 16 QLAGQFAKQTGHAVVISSGSSGPVYAQ-----IVNGAPYNVFFSADEKSPEKLDNQGFALPGSRFTYAIGKLVLWSAKPG 90 (231)
T ss_dssp HHHHHHHHHHCCCEEEEEECHHHHHHH-----HHTTCCCSEEECSSSHHHHHHHHTTCBCTTCCEEEEECCEEEEESSTT
T ss_pred HHHHHHHhccCCeEEEEECCcHHHHHH-----HHcCCCCCEEEeCChhHHHHHHhcCCCcCCceeEeeeeeEEEEEcCCC
Confidence 45555555 5656554332 2337777 88898 99988743221111 12111 145888889999998765
Q ss_pred C
Q 040220 100 E 100 (370)
Q Consensus 100 ~ 100 (370)
+
T Consensus 91 ~ 91 (231)
T 1atg_A 91 L 91 (231)
T ss_dssp T
T ss_pred C
Confidence 3
No 83
>4ecf_A ABC-type phosphate transport system, periplasmic; ABC transporter, phosphate transport receptor; HET: MSE; 1.55A {Lactobacillus brevis}
Probab=33.90 E-value=55 Score=28.81 Aligned_cols=68 Identities=12% Similarity=-0.140 Sum_probs=43.7
Q ss_pred eeHHHHHHHHh-cCCceEEEEehh---hhhhhhccccccCCceeEEEeccccccc---ccceeeecccccccceEEEEeC
Q 040220 25 FCIELYYESQL-ACKGISILFFFL---QLMMRIRHEENFLRNYDSVVGDATILAD---RAKIVEFTQPCAESRLSMIVPA 97 (370)
Q Consensus 25 ~~idl~~~la~-lg~~~~i~~~~~---~li~~~~~~~L~~g~~Diai~~~tit~e---R~~~vdFS~P~~~~~~~ilv~~ 97 (370)
+--++++...+ .. +.+++++.. ..+.+ |.+|++|+++....++.+ +.+.+ -..|+....+.++++.
T Consensus 17 ~l~~~~~~f~~~~P-~v~i~v~~~~S~~~~~~-----l~~g~~Dig~~~~~~~~~e~~~~~~l-~~~~i~~d~lvvvv~~ 89 (264)
T 4ecf_A 17 LVEAAGEQYTGEHL-GTFINVQGGGTGTGLSQ-----IQEGAVQIGNSDLFAGEQKGINARQL-VDHRVAVVGITPIVNK 89 (264)
T ss_dssp HHHHHHHHHHHHST-TEEEEEEEECHHHHHHH-----HHHTSSSEEEESSCGGGSTTCCGGGE-ECCEEEEEEEEEEECT
T ss_pred HHHHHHHHHHHHCC-CceEEEEeCCCHHHHHH-----HHcCCCchhhccCCCChhHHhhccCC-EEEEEEEEEEEEEEcC
Confidence 33455556655 42 344545432 38888 999999999987665542 11222 2568999999999986
Q ss_pred CC
Q 040220 98 KT 99 (370)
Q Consensus 98 ~~ 99 (370)
+.
T Consensus 90 ~~ 91 (264)
T 4ecf_A 90 KV 91 (264)
T ss_dssp TS
T ss_pred CC
Confidence 54
No 84
>1i6a_A OXYR, hydrogen peroxide-inducible genes activator; OXYR regulatory domain, oxidized form, transcription; 2.30A {Escherichia coli} SCOP: c.94.1.1 PDB: 1i69_A
Probab=33.83 E-value=59 Score=26.71 Aligned_cols=65 Identities=8% Similarity=-0.029 Sum_probs=41.2
Q ss_pred eeHHHHHHHHh-cCCceEEEEe---hhhhhhhhccccccCCceeEEEecccccccccceeeecccccccceEEEEeCCC
Q 040220 25 FCIELYYESQL-ACKGISILFF---FLQLMMRIRHEENFLRNYDSVVGDATILADRAKIVEFTQPCAESRLSMIVPAKT 99 (370)
Q Consensus 25 ~~idl~~~la~-lg~~~~i~~~---~~~li~~~~~~~L~~g~~Diai~~~tit~eR~~~vdFS~P~~~~~~~ilv~~~~ 99 (370)
+-.+++..+.+ .. +.+++.. ..+++.. |.+|++|+++...... ...+.+ .|+....+.++++++.
T Consensus 19 ~l~~~l~~f~~~~P-~v~l~l~~~~~~~~~~~-----l~~g~~Dl~i~~~~~~---~~~l~~-~~l~~~~~~~v~~~~h 87 (219)
T 1i6a_A 19 LLPHIIPMLHQTFP-KLEMYLHEAQTHQLLAQ-----LDSGKLDAVILALVKE---SEAFIE-VPLFDEPMLLAIYEDH 87 (219)
T ss_dssp HHHHHHHHHHHHCT-TEEEEEEECCHHHHHHH-----HHHTSCSEEEEECCGG---GTTSEE-EEEEEEEEEEEEETTS
T ss_pred hhhHHHHHHHHHCC-CeEEEEEECChHHHHHH-----HHcCCeeEEEecCCCC---CCCcce-eeeecccEEEEEcCCC
Confidence 34566666666 43 4444332 2337888 9999999999743322 222433 4788888888888764
No 85
>2ql3_A Probable transcriptional regulator, LYSR family P; APC7314, rhodococcus RHA1, structural genomics, PSI-2; HET: MSE; 2.05A {Rhodococcus SP}
Probab=32.84 E-value=69 Score=25.85 Aligned_cols=65 Identities=12% Similarity=-0.032 Sum_probs=40.9
Q ss_pred eeHHHHHHHHh-cCCceEEEEe---hhhhhhhhccccccCCceeEEEecccccccccceeeecccccccceEEEEeCCC
Q 040220 25 FCIELYYESQL-ACKGISILFF---FLQLMMRIRHEENFLRNYDSVVGDATILADRAKIVEFTQPCAESRLSMIVPAKT 99 (370)
Q Consensus 25 ~~idl~~~la~-lg~~~~i~~~---~~~li~~~~~~~L~~g~~Diai~~~tit~eR~~~vdFS~P~~~~~~~ilv~~~~ 99 (370)
+-.+++..+.+ .. +.+++.. ..++..+ |.+|++|+++...... ...+.. .++....+.++++++.
T Consensus 19 ~l~~~l~~f~~~~P-~i~i~l~~~~~~~l~~~-----l~~g~~Dl~i~~~~~~---~~~l~~-~~l~~~~~~~v~~~~h 87 (209)
T 2ql3_A 19 ILPSMLYAFTAEYP-RASVEFREDTQNRLRTQ-----LEGGELDVAIVYDLDL---SPEWQT-VPLMTREPMVVLGAEH 87 (209)
T ss_dssp THHHHHHHHHHHCT-TEEEEEEECCHHHHHHH-----HHTTSCSEEEEESSSC---CTTEEE-EEEEEECCEEEEETTC
T ss_pred hHHHHHHHHHHHCC-CceEEEEECcHHHHHHH-----HHcCCccEEEEecCCC---CCCceE-EEeecCceEEEEeCCC
Confidence 34567777777 53 4444333 2237788 9999999999753222 222333 4788888888888654
No 86
>3lr1_A Tungstate ABC transporter, periplasmic tungstate- binding protein; the tungstate ABC transporter, structural genomics, PSI, MCSG; 1.80A {Geobacter sulfurreducens}
Probab=32.38 E-value=34 Score=30.10 Aligned_cols=71 Identities=14% Similarity=0.060 Sum_probs=47.2
Q ss_pred EeeHHHHHHHHh-cCCceEEEEe-hhhhhhhhccccccCCceeEEEecccccccccc----eeeecccccccceEEEEeC
Q 040220 24 GFCIELYYESQL-ACKGISILFF-FLQLMMRIRHEENFLRNYDSVVGDATILADRAK----IVEFTQPCAESRLSMIVPA 97 (370)
Q Consensus 24 G~~idl~~~la~-lg~~~~i~~~-~~~li~~~~~~~L~~g~~Diai~~~tit~eR~~----~vdFS~P~~~~~~~ilv~~ 97 (370)
|+--+|+....+ .|.+.++.+- -..++.+ +.+|++|+++..-....+... .++ ..|+....+.+++|+
T Consensus 19 ~ll~~L~~~Fek~~gv~V~~~~~gSg~ll~q-----i~~G~aDV~isa~~~~~~~l~~~g~~~~-~~~~~~n~lVlV~P~ 92 (236)
T 3lr1_A 19 GLLKVLLPPFEKKNNVKVDVIAVGTGQALKL-----GEAGDVDVVFVHARKLEDKFVADGFGVN-RKDVMYNDFVIVGPK 92 (236)
T ss_dssp CHHHHHHHHHHHHHTCEEEEEEECHHHHHHH-----HHTTSCSEEEECCHHHHHHHHHTTSEEE-EEEEEECCEEEEECT
T ss_pred HHHHHHHHHHHHHhCCeEEEEEcChHHHHHH-----HhcCCCCEEeecCchhHHHHHhcCCCcc-eEEEEcCcEEEEEEC
Confidence 555667777777 7544333222 2338888 999999999987765544321 223 448888999999998
Q ss_pred CCC
Q 040220 98 KTE 100 (370)
Q Consensus 98 ~~~ 100 (370)
+++
T Consensus 93 ~~P 95 (236)
T 3lr1_A 93 NDP 95 (236)
T ss_dssp TCT
T ss_pred CCh
Confidence 764
No 87
>2czl_A Hypothetical protein TTHA1568; conserved hypothetical protein, extremely thermoph bacteria, structural genomics, NPPSFA; HET: CME TLA XPE; 1.55A {Thermus thermophilus} SCOP: c.94.1.1 PDB: 2dbp_A* 3a3u_A*
Probab=30.04 E-value=1.8e+02 Score=24.99 Aligned_cols=36 Identities=8% Similarity=-0.054 Sum_probs=22.6
Q ss_pred CCeEeeeCChhHHHH-HH--------hcCChHHHHHHhhcccccc
Q 040220 224 NPKVACDRDSFVRNY-LQ--------NFGSDYNYQGEFGSNHIAG 259 (370)
Q Consensus 224 ~~~vg~~~~s~~~~~-l~--------~~~~~~~~~~~l~~g~~~a 259 (370)
|+++|+...+....+ ++ .+....+...++.+|++|+
T Consensus 96 Gk~Ia~~~~~~~~~~ll~~ll~~~~~~~~~~~~~~~al~~G~vDa 140 (272)
T 2czl_A 96 GLRVAVPGRHTTAYFLLSLYAQGFVPVEVRYDRILPMVAQGEVEA 140 (272)
T ss_dssp TCEEEESCTTSHHHHHHHHHCSSCEEEECCGGGHHHHHHTTSSSE
T ss_pred CCEEEeCCCCchHHHHHHHHhccCceeecChHHHHHHHHCCCCCE
Confidence 667776543333222 22 2334568889999999999
No 88
>2qpq_A Protein BUG27; alpha/beta domain, venus flytrap, transport protein; HET: CIT; 1.92A {Bordetella pertussis}
Probab=29.13 E-value=71 Score=28.91 Aligned_cols=77 Identities=12% Similarity=0.071 Sum_probs=47.6
Q ss_pred hcCChHHHHHHhhccccccc----chhHHHHh-hcccceEEcCC----------CCC---------ccceeee---C--C
Q 040220 241 NFGSDYNYQGEFGSNHIAGP----PYEKVFVS-QYCRIYAATTP----------TYG---------FGGLGFL---S--S 291 (370)
Q Consensus 241 ~~~~~~~~~~~l~~g~~~a~----~~~~~~~~-~~c~~~~~~~~----------~~~---------~~~~~~a---~--s 291 (370)
.|....+++.+|..|++|+. .....+++ ...+.+.+.++ ++. ...+++. + .
T Consensus 161 py~g~~~a~~al~~G~vD~~~~~~~~~~~~i~~g~lr~Lav~~~~r~~~~pdvPt~~e~G~~~~~~~~w~gl~ap~g~p~ 240 (301)
T 2qpq_A 161 PYKGCGPALNDVLGSQIGLAVVTASSAIPFIKAGKLQALAVTSKERSALLPEVPTVAEQGVAGYELNQWHGLLVPGATPM 240 (301)
T ss_dssp ECSSHHHHHHHHHTTSSSCEEEEHHHHHHHHHTTSEEEEEECSSSCCTTCTTSCBSGGGTCTTCCCEEEEEEEEETTCCH
T ss_pred ccCChHHHHHHHHCCCccEEEEcHHHHHHHHhcCCeEEEEEcCCccccccCCCCChHHhCCCceEEEeEEEEEecCCCCH
Confidence 46778899999999999992 11112222 12221222211 010 0123443 4 3
Q ss_pred cchHHHHHHHHHhhhcCchhHHHHhh
Q 040220 292 PIAADFSEAILKLSENKKLKSLEYNE 317 (370)
Q Consensus 292 pl~~~in~~i~~l~e~G~~~~l~~~w 317 (370)
+..+++++++.++.+++.+++..+++
T Consensus 241 ~vv~~l~~al~~~~~~~~~~~~~~~~ 266 (301)
T 2qpq_A 241 AVRQKLYDGIAKVMQRDDVQKKLADL 266 (301)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCHHHHHHHHHC
Confidence 58999999999999999988877766
No 89
>2hxr_A HTH-type transcriptional regulator CYNR; CYNR transcriptional regulator LYSR struc genomics, PSI-2, protein structure initiative; 2.05A {Escherichia coli} PDB: 3hfu_A
Probab=27.12 E-value=68 Score=26.61 Aligned_cols=64 Identities=11% Similarity=-0.020 Sum_probs=38.9
Q ss_pred HHHHHHHHh-cC-CceEEEEe-hhhhhhhhccccccCCceeEEEecccccccccceeeecccccccceEEEEeCCC
Q 040220 27 IELYYESQL-AC-KGISILFF-FLQLMMRIRHEENFLRNYDSVVGDATILADRAKIVEFTQPCAESRLSMIVPAKT 99 (370)
Q Consensus 27 idl~~~la~-lg-~~~~i~~~-~~~li~~~~~~~L~~g~~Diai~~~tit~eR~~~vdFS~P~~~~~~~ilv~~~~ 99 (370)
.+++..+.+ .. .+.++... ...++.. |.+|++|+++...... .+.+.+ .|+....+.++++++.
T Consensus 46 ~~~l~~f~~~~P~v~l~~~~~~~~~~~~~-----l~~g~~Dl~i~~~~~~---~~~l~~-~~l~~~~~~~v~~~~h 112 (238)
T 2hxr_A 46 GPLMADFYARYPSITLQLQEMSQEKIEDM-----LCRDELDVGIAFAPVH---SPELEA-IPLLTESLALVVAQHH 112 (238)
T ss_dssp HHHHHHHHHHCTTSCEEEEECCHHHHHHH-----HHTTSCSEEEEESSCC---CTTEEE-EEEEEEEEEEEEETTS
T ss_pred HHHHHHHHHhCCCcEEEEEECCHHHHHHH-----HHcCCCcEEEEcCCCC---ccccee-eeeccCcEEEEEcCCC
Confidence 455566666 42 23332221 2337778 9999999999753322 223433 4788888899888654
No 90
>3muq_A Uncharacterized conserved protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 2.05A {Vibrio parahaemolyticus}
Probab=25.44 E-value=74 Score=27.86 Aligned_cols=72 Identities=8% Similarity=-0.036 Sum_probs=46.2
Q ss_pred EeeHHHHHHHHh-cCCceEEEEe-hhhhhhhhccccccCCceeEEEecccccccccc---eeeecccccccceEEEEeCC
Q 040220 24 GFCIELYYESQL-ACKGISILFF-FLQLMMRIRHEENFLRNYDSVVGDATILADRAK---IVEFTQPCAESRLSMIVPAK 98 (370)
Q Consensus 24 G~~idl~~~la~-lg~~~~i~~~-~~~li~~~~~~~L~~g~~Diai~~~tit~eR~~---~vdFS~P~~~~~~~ilv~~~ 98 (370)
|+--+|+....+ -|.+.++.+. -..++.+ +.+|.+|+++.+-....+... ...=..|+....+++++|++
T Consensus 19 ~ll~~L~~~Fek~~gv~V~~~~~gSg~ll~q-----i~~G~aDv~isa~~~~~~~l~~~g~~~~~~~~a~N~lVlV~P~~ 93 (237)
T 3muq_A 19 GLLDYLLPQFEKDTGYKVDVIAAGTGKALKM-----GENGDVDLVMTHAPKAEGTFVEKGYGVLPRKLMYNDFVIVGPKA 93 (237)
T ss_dssp THHHHHHHHHHHHHCCEEEEEEECHHHHHHH-----HHTTSSSEEEECCHHHHHHHHHTTSEEEEEEEEEEEEEEEECTT
T ss_pred hHHHHHHHHHHHHhCceEEEEEcChHHHHHH-----HhcCCCCEEEecCchhHHHHHhcCCccccEEEEeCCEEEEEeCC
Confidence 445567777777 7644333222 2338888 999999999887665544321 11123578888899999876
Q ss_pred CC
Q 040220 99 TE 100 (370)
Q Consensus 99 ~~ 100 (370)
++
T Consensus 94 ~P 95 (237)
T 3muq_A 94 DP 95 (237)
T ss_dssp CT
T ss_pred Ch
Confidence 54
No 91
>3onm_A Transcriptional regulator LRHA; LYSR, ROVM, transcription factor, virulence factor; 2.40A {Yersinia pseudotuberculosis}
Probab=24.84 E-value=63 Score=26.99 Aligned_cols=62 Identities=8% Similarity=-0.221 Sum_probs=38.1
Q ss_pred HHHHHHHHh-c-CCceEEEEe-hhhhhhhhccccccCCceeEEEecccccccccceeeecccccccceEEEEeCCC
Q 040220 27 IELYYESQL-A-CKGISILFF-FLQLMMRIRHEENFLRNYDSVVGDATILADRAKIVEFTQPCAESRLSMIVPAKT 99 (370)
Q Consensus 27 idl~~~la~-l-g~~~~i~~~-~~~li~~~~~~~L~~g~~Diai~~~tit~eR~~~vdFS~P~~~~~~~ilv~~~~ 99 (370)
.+++..+.+ . +.++++... ..++... |.+|++|+++...... .+ -+.|+....+.+++++..
T Consensus 43 ~~~l~~f~~~~P~i~l~i~~~~~~~~~~~-----L~~g~~Dl~i~~~~~~-----~~-~~~~l~~~~~~~v~~~~~ 107 (238)
T 3onm_A 43 PFLLNRVATLYPRLAIDVRVKRSPFIADM-----LSSGEVDLAITTAKVD-----SH-PHVILRTSPTLWYCSVDY 107 (238)
T ss_dssp HHHHHHHHHHCTTCCEEEEECCHHHHHHH-----HHHTSCSEEEECSCC------CC-CEEEEEEECEEEEEETTC
T ss_pred HHHHHHHHHHCCCcEEEEEECCHHHHHHH-----HHCCCccEEEEecCCC-----Cc-ceEEeecCCEEEEEcCCC
Confidence 345555655 3 233332221 2337788 9999999999754321 13 244788889999988764
No 92
>2g29_A Nitrate transport protein NRTA; solute-binding protein, alpha-beta protein; 1.50A {Synechocystis SP}
Probab=24.46 E-value=4.3e+02 Score=24.55 Aligned_cols=62 Identities=8% Similarity=-0.130 Sum_probs=36.4
Q ss_pred HHh-cCC-ceEEEE--ehhhhhhhhccccccCCc----eeEEEec--cc--cccc---ccceeeecccc--cccceEEEE
Q 040220 33 SQL-ACK-GISILF--FFLQLMMRIRHEENFLRN----YDSVVGD--AT--ILAD---RAKIVEFTQPC--AESRLSMIV 95 (370)
Q Consensus 33 la~-lg~-~~~i~~--~~~~li~~~~~~~L~~g~----~Diai~~--~t--it~e---R~~~vdFS~P~--~~~~~~ilv 95 (370)
+.+ .|+ +.++.. .+..++.. |..|+ +|++..+ +. ++.. |.+..++..+. ...+..+++
T Consensus 56 ~~~~~Gl~~Ve~~~~~~~~~~~~a-----l~~G~~~~giD~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~v 130 (417)
T 2g29_A 56 FYAKYGMPDVEVLKQASWGTTRDN-----LVLGSASGGIDGAHILTPMPYLITMGTVTDGKPTPMYILARLNVNGQGIQL 130 (417)
T ss_dssp HHHHTTCTTCEEEECSCHHHHHHH-----HHHCGGGTSCSEEEEETHHHHHHHHCTTSSSCCCCEEEEEECCBSCEEEEE
T ss_pred chHHcCCCeeEEEecCCHHHHHHH-----HHCCCCcCCcCeEeecchHHHHHHhCcccCCCCCCEEEEEEeccCCeEEEE
Confidence 344 676 655322 24558888 99999 9999863 32 3322 33445554443 345677777
Q ss_pred eCCC
Q 040220 96 PAKT 99 (370)
Q Consensus 96 ~~~~ 99 (370)
++..
T Consensus 131 ~~~~ 134 (417)
T 2g29_A 131 GNNY 134 (417)
T ss_dssp CGGG
T ss_pred ecch
Confidence 7543
No 93
>3fzv_A Probable transcriptional regulator; LYSR, structural genomics, PSI-2, structure initiative; 2.71A {Pseudomonas aeruginosa PA01}
Probab=23.52 E-value=1.3e+02 Score=26.07 Aligned_cols=63 Identities=16% Similarity=0.080 Sum_probs=37.6
Q ss_pred HHHHHHHHh-cCCceEEEEe---hhhhhhhhccccccCCceeEEEecccccccccceeeeccccc-ccceEEEEeCCC
Q 040220 27 IELYYESQL-ACKGISILFF---FLQLMMRIRHEENFLRNYDSVVGDATILADRAKIVEFTQPCA-ESRLSMIVPAKT 99 (370)
Q Consensus 27 idl~~~la~-lg~~~~i~~~---~~~li~~~~~~~L~~g~~Diai~~~tit~eR~~~vdFS~P~~-~~~~~ilv~~~~ 99 (370)
.+++..+.+ .. +.++++. ..+++.. |.+|++|+++..-.... ..+.. .|+. .....++++++.
T Consensus 111 ~~~l~~f~~~~P-~i~i~l~~~~~~~~~~~-----l~~g~~Dl~i~~~~~~~---~~l~~-~~l~~~~~~~~v~~~~~ 178 (306)
T 3fzv_A 111 PGLIAGFRQAYP-GVEIRIRDGEQQELVQG-----LTSGRFDLAFLYEHDLD---STIET-EPLMPPQRPHALLPEGH 178 (306)
T ss_dssp HHHHHHHHHHCT-TEEEEEEEECHHHHHHH-----HHHTSCSEEEECSSSCC---TTEEE-EESSCCBCCEEEEETTC
T ss_pred HHHHHHHHHHCC-CeEEEEEeCCHHHHHHH-----HHCCCccEEEEeccccc---cccce-eeeeeccccEEEecCCC
Confidence 345555555 43 3344332 2236778 99999999987533222 22433 3666 777788887664
No 94
>2fyi_A HTH-type transcriptional regulator CBL; Lys-R family, cofactor-binding DO cysteine biosynthesis; 2.80A {Escherichia coli K12} SCOP: c.94.1.1
Probab=22.74 E-value=1.3e+02 Score=24.78 Aligned_cols=64 Identities=9% Similarity=-0.022 Sum_probs=39.2
Q ss_pred HHHHHHHHh-cCCceEEEEe---hhhhhhhhccccccCCceeEEEecccccccccceeeecccccccceEEEEeCCC
Q 040220 27 IELYYESQL-ACKGISILFF---FLQLMMRIRHEENFLRNYDSVVGDATILADRAKIVEFTQPCAESRLSMIVPAKT 99 (370)
Q Consensus 27 idl~~~la~-lg~~~~i~~~---~~~li~~~~~~~L~~g~~Diai~~~tit~eR~~~vdFS~P~~~~~~~ilv~~~~ 99 (370)
.+++..+.+ .. +.+++.. ...++.. |.+|++|+++...... ....+.+ .|+....+.++++++.
T Consensus 30 ~~~l~~f~~~~P-~v~l~l~~~~~~~~~~~-----l~~g~~Dl~i~~~~~~--~~~~l~~-~~l~~~~~~~v~~~~h 97 (228)
T 2fyi_A 30 PEVIKAFRELFP-EVRLELIQGTPQEIATL-----LQNGEADIGIASERLS--NDPQLVA-FPWFRWHHSLLVPHDH 97 (228)
T ss_dssp HHHHHHHHHHCT-TEEEEEEECCHHHHHHH-----HHHTSCSEEEESSSST--TCTTEEE-EEEEEECEEEEEETTC
T ss_pred HHHHHHHHHHCC-CcEEEEEeCCHHHHHHH-----HHcCCccEEEEecccC--CCCCceE-EEeeecceEEEecCCC
Confidence 455566666 43 4444433 2347788 9999999999742221 1122333 4788888888888754
No 95
>2h9b_A HTH-type transcriptional regulator BENM; LTTR, transcriptional activator, LYSR-type transcripti regulator; 1.80A {Acinetobacter SP} PDB: 2h99_A 3k1m_A 3k1n_A 3k1p_A 2f7a_A* 2f6p_A 2f78_A 2f6g_A* 2f8d_A 2f97_A*
Probab=22.66 E-value=1.1e+02 Score=26.83 Aligned_cols=64 Identities=13% Similarity=0.006 Sum_probs=40.2
Q ss_pred eHHHHHHHHh-cCCceEEEEe---hhhhhhhhccccccCCceeEEEecccccccccceeeecccccccceEEEEeCCC
Q 040220 26 CIELYYESQL-ACKGISILFF---FLQLMMRIRHEENFLRNYDSVVGDATILADRAKIVEFTQPCAESRLSMIVPAKT 99 (370)
Q Consensus 26 ~idl~~~la~-lg~~~~i~~~---~~~li~~~~~~~L~~g~~Diai~~~tit~eR~~~vdFS~P~~~~~~~ilv~~~~ 99 (370)
-.+++..+.+ .. +.++++. ..+++.. |.+|++|+++....... ..+.+ .|+....+.++++.+.
T Consensus 105 l~~~l~~f~~~~P-~v~i~l~~~~~~~~~~~-----l~~g~~Dlai~~~~~~~---~~l~~-~~L~~~~~~~v~~~~h 172 (312)
T 2h9b_A 105 LPRIIHLYRQAHP-NLRIELYEMGTKAQTEA-----LKEGRIDAGFGRLKISD---PAIKH-SLLRNERLMVAVHASH 172 (312)
T ss_dssp HHHHHHHHHHTCT-TCEEEEEECCHHHHHHH-----HHTTSCSEEEESSCCCC---TTEEE-EEEEEEEEEEEEETTS
T ss_pred HHHHHHHHHHHCC-CcEEEEEeCCHHHHHHH-----HHcCCCCEEEEeCCCCC---CCceE-EEeecceEEEEEcCCC
Confidence 3556666666 43 3344333 2347778 99999999997543322 22333 4788888888888654
No 96
>4exl_A PBP 1, phosphate-binding protein PSTS 1; center for structural genomics of infectious diseases (csgid national institute of allergy and infectious diseases; 1.70A {Streptococcus pneumoniae}
Probab=22.53 E-value=1.2e+02 Score=26.68 Aligned_cols=65 Identities=15% Similarity=-0.028 Sum_probs=39.9
Q ss_pred HHHHHHHh-cCCceEEEEehh---hhhhhhccccccCCceeEEEecccccc-c--ccceeeecccccccceEEEEeCCC
Q 040220 28 ELYYESQL-ACKGISILFFFL---QLMMRIRHEENFLRNYDSVVGDATILA-D--RAKIVEFTQPCAESRLSMIVPAKT 99 (370)
Q Consensus 28 dl~~~la~-lg~~~~i~~~~~---~li~~~~~~~L~~g~~Diai~~~tit~-e--R~~~vdFS~P~~~~~~~ilv~~~~ 99 (370)
+++....+ .. +.++++... ..+.+ |.+|++|+++.+..... + ....+ -..|+...+++++++.+.
T Consensus 20 ~~~~~F~~~~P-~v~i~v~~~gS~~gi~~-----l~~g~~Dig~~~~~~~~~~~~~~~~l-~~~~ia~d~lvvvv~~~~ 91 (265)
T 4exl_A 20 VAADEFGTIHV-GKTVNVQGGGSGTGLSQ-----VQSGAVDIGNSDVFAEEKDGIDASAL-VDHKVAVAGLALIVNKEV 91 (265)
T ss_dssp HHHHHHHHHST-TCEEEEEEECHHHHHHH-----HHTTSSSEEEESSCGGGSTTCCGGGE-ECCEEEEEEEEEEECTTC
T ss_pred HHHHHHHHHCC-CceEEEeeCCcHHHHHH-----HHcCCCccccccCCcchhhcccccCc-eEeeEEEEEEEEEECCCC
Confidence 34445544 32 334445432 38888 99999999998654432 1 11122 256899999999998654
No 97
>3rvy_A ION transport protein; tetrameric ION channel, voltage-gated sodium-selective ION C membrane, metal transport; HET: PX4; 2.70A {Arcobacter butzleri} PDB: 3rvz_A* 4ekw_A* 3rw0_A*
Probab=21.59 E-value=58 Score=28.99 Aligned_cols=60 Identities=10% Similarity=0.161 Sum_probs=40.6
Q ss_pred CCccchHHHHHHHhHhccCccceeeeeeccccC-ccc-cCcc-cchhhHHHHHHHHHHHHHHHHHhhcCCcccccc
Q 040220 146 DQIGTALWFNFSSILFAYGKEHVLHFIIMVNWK-PIF-GGRI-DSNLTRLVVVVWLFVVLILTSSYTASPSPMLTV 218 (370)
Q Consensus 146 ~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~-~~~~~R~l~~~w~~~~lil~~~Yta~L~s~Lt~ 218 (370)
+++.+++|+.+.++++.+ |- |+. +... ...+++.+....+++++++.+..+|-+++....
T Consensus 179 ~s~~~a~~~~~~~~T~~g-------------~~~di~~p~~~~~~~~~~~f~~~~~i~~~~~lnl~~aii~~~f~~ 241 (285)
T 3rvy_A 179 GTLGESFYTLFQVMTLES-------------WSMGIVRPLMEVYPYAWVFFIPFIFVVTFVMINLVVAICVDAMAI 241 (285)
T ss_dssp SSHHHHHHHHHHHHTTTT-------------CCCCCHHHHHTTCTTTHHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred CCHHHHHHHHHHHHHhCC-------------CcHHHHHHHHHcCChHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457789999998888653 33 331 1111 224557788888888999999999988877654
No 98
>1uth_A LYSR-type regulatory protein; transcription regulation, transcriptional regulator; 2.2A {Burkholderia SP} SCOP: c.94.1.1 PDB: 1utb_A 1utb_B 1uth_B 2uyf_A 2uye_A
Probab=21.02 E-value=1.4e+02 Score=26.18 Aligned_cols=42 Identities=12% Similarity=-0.098 Sum_probs=29.1
Q ss_pred hhhhhccccccCCceeEEEecccccccccceeeecccccccceEEEEeCCC
Q 040220 49 LMMRIRHEENFLRNYDSVVGDATILADRAKIVEFTQPCAESRLSMIVPAKT 99 (370)
Q Consensus 49 li~~~~~~~L~~g~~Diai~~~tit~eR~~~vdFS~P~~~~~~~ilv~~~~ 99 (370)
++.. |.+|++|+++....... ..+.. .|+....+.++++++.
T Consensus 146 ~~~~-----l~~g~~Dl~i~~~~~~~---~~l~~-~~l~~~~~~~v~~~~h 187 (315)
T 1uth_A 146 LKED-----MESGAVDLALGLLPELQ---TGFFQ-RRLFRHRYVCMFRKDH 187 (315)
T ss_dssp HHHH-----HHHTSCCEEEECCTTCC---TTEEE-EEEEEECEEEEEETTC
T ss_pred HHHH-----HHCCCCCEEEecCCCCC---CCceE-EEeeccceEEEEeCCC
Confidence 6777 99999999997543222 22333 4788888888887654
No 99
>4gd5_A Phosphate ABC transporter, phosphate-binding PROT; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: MSE; 1.70A {Clostridium perfringens}
Probab=20.96 E-value=73 Score=28.04 Aligned_cols=68 Identities=6% Similarity=-0.072 Sum_probs=44.5
Q ss_pred HHHHHHHh-cC---CceEEEEehhh---hhhhhccccccCCceeEEEecccccccccceeeecccccccceEEEEeCCCC
Q 040220 28 ELYYESQL-AC---KGISILFFFLQ---LMMRIRHEENFLRNYDSVVGDATILADRAKIVEFTQPCAESRLSMIVPAKTE 100 (370)
Q Consensus 28 dl~~~la~-lg---~~~~i~~~~~~---li~~~~~~~L~~g~~Diai~~~tit~eR~~~vdFS~P~~~~~~~ilv~~~~~ 100 (370)
.+++++++ .. =+.+++|+..- .+.+ +.+|.+|++.++-.+..+..+.---..|+...++++++.++..
T Consensus 49 p~~~~~a~~f~~~~p~v~v~~~~~GSg~g~~~-----~~~G~~di~~as~~~~~~e~~~~~~~~~ia~d~~~vivn~~n~ 123 (279)
T 4gd5_A 49 PVMEAEAEAFKTKKPDVSIEINQIGSSAGIKN-----AMEGVSEIGMASRDLKGEEKQAGLKEVEIAYDGIALITHKNNP 123 (279)
T ss_dssp HHHHHHHHHHHHHSTTCEEEEEECCHHHHHHH-----HHHTSSSEEEESSCCCHHHHTTCCEEEEEEEEEEEEEEETTCS
T ss_pred HHHHHHHHHHHHHCCCceEEEeeCCcHHHHHH-----HHcCCCcEEEecchhhhhHhhcCceEEEEEeeceeeeeccCCc
Confidence 45666665 21 13456666433 7777 9999999998877776543332223457888999999987654
No 100
>3ir1_A Outer membrane lipoprotein GNA1946; D-methionine cultured, protein binding; 2.15A {Neisseria meningitidis}
Probab=20.95 E-value=1.8e+02 Score=25.61 Aligned_cols=68 Identities=16% Similarity=0.195 Sum_probs=46.2
Q ss_pred hcCChHHHHHHhhcccccc-----cchhHHHHhhcccceEEcCCCCCccceeee-------------------CCcchHH
Q 040220 241 NFGSDYNYQGEFGSNHIAG-----PPYEKVFVSQYCRIYAATTPTYGFGGLGFL-------------------SSPIAAD 296 (370)
Q Consensus 241 ~~~~~~~~~~~l~~g~~~a-----~~~~~~~~~~~c~~~~~~~~~~~~~~~~~a-------------------~spl~~~ 296 (370)
.|.+..+--++|.+|++|+ .+|++-+.+++.-.+..++..+ ..++|+. +.| ..
T Consensus 35 ~F~Dy~~pN~AL~~G~iDaN~fQh~pyL~~~nk~~g~~Lv~v~~~~-~~p~glYS~k~ksl~dl~~Ga~IaIPnDp--tN 111 (245)
T 3ir1_A 35 EFTDYVRPNLALAEGELDINVFQHKPYLDDFKKEHNLDITEVFQVP-TAPLGLYPGKLKSLEEVKDGSTVSAPNDP--SN 111 (245)
T ss_dssp EESSSSHHHHHHHHTSCSEEEEECHHHHHHHHHHHTCCEEEEEECC-BCCCEEEESSCCCGGGCCTTCEEEEECSH--HH
T ss_pred EeCCcHhHHHHHHCCCcCeeccCCHHHHHHHHHHcCCCEEEEeeec-ccceEEecCCCCCHHHcCCCCEEEecCCc--cH
Confidence 5677778889999999999 5666655554443466666553 4455554 222 35
Q ss_pred HHHHHHHhhhcCchh
Q 040220 297 FSEAILKLSENKKLK 311 (370)
Q Consensus 297 in~~i~~l~e~G~~~ 311 (370)
-.++|.-|++.|++.
T Consensus 112 ~~RaL~lL~~aGLIk 126 (245)
T 3ir1_A 112 FARVLVMLDELGWIK 126 (245)
T ss_dssp HHHHHHHHHHTTSSE
T ss_pred HHHHHHHHHHCCCEE
Confidence 678899999999874
No 101
>2esn_A Probable transcriptional regulator; PA0477, APC5828,transcription, PSI, protein struc initiative, MCSG; 2.10A {Pseudomonas aeruginosa} SCOP: a.4.5.37 c.94.1.1
Probab=20.57 E-value=1.2e+02 Score=26.37 Aligned_cols=62 Identities=13% Similarity=0.042 Sum_probs=37.5
Q ss_pred HHHHHHHh-cCCceEEEEehh---hhhhhhccccccCCceeEEEec---ccccccccceeeecccccccceEEEEeCCC
Q 040220 28 ELYYESQL-ACKGISILFFFL---QLMMRIRHEENFLRNYDSVVGD---ATILADRAKIVEFTQPCAESRLSMIVPAKT 99 (370)
Q Consensus 28 dl~~~la~-lg~~~~i~~~~~---~li~~~~~~~L~~g~~Diai~~---~tit~eR~~~vdFS~P~~~~~~~ilv~~~~ 99 (370)
+++..+.+ .. +.+++.... +++.. |.+|++|+++.. .... ...+.+ .|+....+.++++.+.
T Consensus 118 ~~l~~f~~~~P-~i~i~l~~~~~~~~~~~-----l~~g~~Dl~i~~~~~~~~~---~~~l~~-~~l~~~~~~~v~~~~~ 186 (310)
T 2esn_A 118 PLMNRLQHSAP-GVRLRLVNAERKLSVEA-----LASGRIDFALGYDEEHERL---PEGIQA-HDWFADRYVVVARRDH 186 (310)
T ss_dssp HHHHHHHHHST-TCEEEEECCSSSCCHHH-----HHHTSSSEEEECCSTTCCC---CTTEEE-EEEEEECEEEEEESSC
T ss_pred HHHHHHHHHCC-CeEEEEEeCCcccHHHH-----HHcCCCCEEEecCcccccC---CcCcce-eeeeccceEEEEeCCC
Confidence 44445555 43 334444322 26777 899999999975 3222 222333 4788888999888654
No 102
>1ixc_A CBNR, LYSR-type regulatory protein; long alpha helix connecting DNA binding and regulatory domai binding protein; 2.20A {Cupriavidus necator} SCOP: a.4.5.37 c.94.1.1 PDB: 1iz1_A
Probab=20.15 E-value=1.2e+02 Score=26.07 Aligned_cols=65 Identities=8% Similarity=-0.145 Sum_probs=41.1
Q ss_pred eeHHHHHHHHh-cCCceEEEEeh---hhhhhhhccccccCCceeEEEecccccccccceeeecccccccceEEEEeCCC
Q 040220 25 FCIELYYESQL-ACKGISILFFF---LQLMMRIRHEENFLRNYDSVVGDATILADRAKIVEFTQPCAESRLSMIVPAKT 99 (370)
Q Consensus 25 ~~idl~~~la~-lg~~~~i~~~~---~~li~~~~~~~L~~g~~Diai~~~tit~eR~~~vdFS~P~~~~~~~ilv~~~~ 99 (370)
+-.+++..+.+ .. +.+++... .+++.. |.+|++|+++...... ...+.. .|.....+.++++.+.
T Consensus 105 ~l~~~l~~f~~~~P-~i~l~~~~~~~~~~~~~-----l~~g~~Dl~i~~~~~~---~~~l~~-~~l~~~~~~~v~~~~~ 173 (294)
T 1ixc_A 105 SLPLLLRAFLTSTP-TATVSLTHMTKDEQVEG-----LLAGTIHVGFSRFFPR---HPGIEI-VNIAQEDLYLAVHRSQ 173 (294)
T ss_dssp HHHHHHHHHHHHCT-TEEEEEEECCHHHHHHH-----HHHTSCSEEEESCCCC---CTTEEE-EEEEEEEEEEEEEGGG
T ss_pred HHHHHHHHHHHHCC-CcEEEEEeCCHHHHHHH-----HHCCCccEEEEecCCC---CCCceE-EEEeeccEEEEEeCCC
Confidence 34566666666 43 44444432 237778 9999999999754332 233333 4788888888888654
No 103
>1pc3_A Phosphate-binding protein 1; phosphate transport receptor, immonodominant antigen, mycoba tuberculosis, ION-dipole interactions; 2.16A {Mycobacterium tuberculosis} SCOP: c.94.1.1
Probab=20.06 E-value=72 Score=29.51 Aligned_cols=45 Identities=9% Similarity=-0.075 Sum_probs=34.8
Q ss_pred hhhhhccccccCCceeEEEecccccccccce---eeecccccccceEEEEeCCC
Q 040220 49 LMMRIRHEENFLRNYDSVVGDATILADRAKI---VEFTQPCAESRLSMIVPAKT 99 (370)
Q Consensus 49 li~~~~~~~L~~g~~Diai~~~tit~eR~~~---vdFS~P~~~~~~~ilv~~~~ 99 (370)
.+.+ +.+|++|+++.+-.++.+..+. + -..|+...+++++++.+.
T Consensus 67 g~~~-----l~~g~~Di~~~~~~~~~~e~~~~~~l-~~~pi~~d~lvvvvn~~~ 114 (350)
T 1pc3_A 67 GIAQ-----AAAGTVNIGASDAYLSEGDMAAHKGL-MNIALAISAQQVNYNLPG 114 (350)
T ss_dssp HHHH-----HHTTSCSEEEESSCCCHHHHHHSTTE-EEEEEEEEEEEEEECCTT
T ss_pred HHHH-----HHcCCCcEEeccCCCCHHHHHhcCCC-EEeeEEeeeEEEEEeCCc
Confidence 7888 9999999999988887654321 2 245889999999998764
Done!