BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 040221
(142 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2DJP|A Chain A, The Solution Structure Of The Lysm Domain Of Human
Hypothetical Protein Sb145
Length = 77
Score = 42.0 bits (97), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 21/39 (53%), Positives = 28/39 (71%), Gaps = 1/39 (2%)
Query: 105 GDTLWGLSRKYGVSIDAIKEANGL-SGDTIYAGKKLIIP 142
GDTL GL+ KYGV+++ IK AN L + D+I+ K L IP
Sbjct: 23 GDTLAGLALKYGVTMEQIKRANRLYTNDSIFLKKTLYIP 61
>pdb|3CU3|A Chain A, Crystal Structure Of A Domain Of Unknown Function With A
Cystatin-Like Fold (Npun_r1993) From Nostoc Punctiforme
Pcc 73102 At 2.00 A Resolution
Length = 172
Score = 28.5 bits (62), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 14/46 (30%), Positives = 24/46 (52%)
Query: 13 VPAENDGSGDGREAAVAKTAGFVVFSGIAISILKALNPLNKNRNET 58
+ A N GSG+G A ++TA F+ F G + K + ++ +T
Sbjct: 26 IDAWNRGSGEGFAAPFSETADFITFEGTHLKGRKEIAAFHQQAFDT 71
>pdb|2YAD|A Chain A, Brichos Domain Of Surfactant Protein C Precursor Protein
pdb|2YAD|B Chain B, Brichos Domain Of Surfactant Protein C Precursor Protein
pdb|2YAD|C Chain C, Brichos Domain Of Surfactant Protein C Precursor Protein
pdb|2YAD|D Chain D, Brichos Domain Of Surfactant Protein C Precursor Protein
pdb|2YAD|E Chain E, Brichos Domain Of Surfactant Protein C Precursor Protein
pdb|2YAD|F Chain F, Brichos Domain Of Surfactant Protein C Precursor Protein
Length = 171
Score = 28.1 bits (61), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 20/41 (48%)
Query: 11 PRVPAENDGSGDGREAAVAKTAGFVVFSGIAISILKALNPL 51
P VP G +GR+A A + G F G A+S L PL
Sbjct: 128 PAVPTSKLGQAEGRDAGSAPSGGDPAFLGXAVSTLCGEVPL 168
>pdb|1Y7M|A Chain A, Crystal Structure Of The B. Subtilis Ykud Protein At 2 A
Resolution
pdb|1Y7M|B Chain B, Crystal Structure Of The B. Subtilis Ykud Protein At 2 A
Resolution
Length = 164
Score = 25.8 bits (55), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 13/44 (29%), Positives = 26/44 (59%)
Query: 99 TVEIVRGDTLWGLSRKYGVSIDAIKEANGLSGDTIYAGKKLIIP 142
T ++ +GDTL ++ + +S A+ +AN + AG+ ++IP
Sbjct: 3 TYQVKQGDTLNSIAADFRISTAALLQANPSLQAGLTAGQSIVIP 46
>pdb|4A1I|A Chain A, Ykud From B.Subtilis
pdb|4A1I|B Chain B, Ykud From B.Subtilis
pdb|4A1I|C Chain C, Ykud From B.Subtilis
pdb|4A1I|D Chain D, Ykud From B.Subtilis
pdb|4A1I|E Chain E, Ykud From B.Subtilis
pdb|4A1I|F Chain F, Ykud From B.Subtilis
pdb|4A1I|G Chain G, Ykud From B.Subtilis
pdb|4A1I|H Chain H, Ykud From B.Subtilis
pdb|4A1J|A Chain A, Ykud L,D-Transpeptidase From B.Subtilis
pdb|4A1J|B Chain B, Ykud L,D-Transpeptidase From B.Subtilis
Length = 165
Score = 25.8 bits (55), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 13/44 (29%), Positives = 26/44 (59%)
Query: 99 TVEIVRGDTLWGLSRKYGVSIDAIKEANGLSGDTIYAGKKLIIP 142
T ++ +GDTL ++ + +S A+ +AN + AG+ ++IP
Sbjct: 4 TYQVKQGDTLNSIAADFRISTAALLQANPSLQAGLTAGQSIVIP 47
>pdb|3ZQD|A Chain A, B. Subtilis L,D-Transpeptidase
pdb|4A52|A Chain A, Nmr Structure Of The Imipenem-Acylated L,D-Transpeptidase
From Bacillus Subtilis
Length = 175
Score = 25.8 bits (55), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 13/44 (29%), Positives = 26/44 (59%)
Query: 99 TVEIVRGDTLWGLSRKYGVSIDAIKEANGLSGDTIYAGKKLIIP 142
T ++ +GDTL ++ + +S A+ +AN + AG+ ++IP
Sbjct: 6 TYQVKQGDTLNSIAADFRISTAALLQANPSLQAGLTAGQSIVIP 49
>pdb|4A1K|A Chain A, Ykud L,D-Transpeptidase
Length = 165
Score = 25.8 bits (55), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 13/44 (29%), Positives = 26/44 (59%)
Query: 99 TVEIVRGDTLWGLSRKYGVSIDAIKEANGLSGDTIYAGKKLIIP 142
T ++ +GDTL ++ + +S A+ +AN + AG+ ++IP
Sbjct: 4 TYQVKQGDTLNSIAADFRISTAALLQANPSLQAGLTAGQSIVIP 47
>pdb|3FX6|A Chain A, X-Ray Crystallographic Studies On The Complex Of
Carboxypeptidase A With The Inhibitor Using Alpha-Nitro
Ketone As The Zinc-Binding Group
pdb|3FX6|C Chain C, X-Ray Crystallographic Studies On The Complex Of
Carboxypeptidase A With The Inhibitor Using Alpha-Nitro
Ketone As The Zinc-Binding Group
pdb|3FX6|E Chain E, X-Ray Crystallographic Studies On The Complex Of
Carboxypeptidase A With The Inhibitor Using Alpha-Nitro
Ketone As The Zinc-Binding Group
pdb|3FVL|A Chain A, Crystallogic Studies On The Complex Of Carboxypeptidase A
With Inhibitors Using Alpha-Hydroxy Ketone As
Zinc-Binding Group
pdb|3FVL|C Chain C, Crystallogic Studies On The Complex Of Carboxypeptidase A
With Inhibitors Using Alpha-Hydroxy Ketone As
Zinc-Binding Group
pdb|3FVL|E Chain E, Crystallogic Studies On The Complex Of Carboxypeptidase A
With Inhibitors Using Alpha-Hydroxy Ketone As
Zinc-Binding Group
Length = 307
Score = 25.8 bits (55), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 26/47 (55%), Gaps = 2/47 (4%)
Query: 88 EKSEPEPASCRTVEIVRGDTLWGLSRKYGVSIDAIKEANGLSGDTIY 134
+K+E + VE ++ +L+G S KYG I I +A+G S D Y
Sbjct: 215 DKTELNQVAKSAVEALK--SLYGTSYKYGSIITTIYQASGGSIDWSY 259
>pdb|1PYT|B Chain B, Ternary Complex Of Procarboxypeptidase A, Proproteinase E,
And Chymotrypsinogen C
pdb|3KGQ|A Chain A, Carboxypeptidase A Liganded To An Organic Small-Molecule:
Conformational Changes
Length = 309
Score = 25.8 bits (55), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 26/47 (55%), Gaps = 2/47 (4%)
Query: 88 EKSEPEPASCRTVEIVRGDTLWGLSRKYGVSIDAIKEANGLSGDTIY 134
+K+E + VE ++ +L+G S KYG I I +A+G S D Y
Sbjct: 215 DKTELNQVAKSAVEALK--SLYGTSYKYGSIITTIYQASGGSIDWSY 259
>pdb|1HDQ|A Chain A, Crystal Structure Of Bovine Pancreatic Carboxypeptidase A
Complexed With D-N-Hydroxyaminocarbonyl Phenylalanine At
2.3 A
pdb|2CTB|A Chain A, The High Resolution Crystal Structure Of The Complex
Between Carboxypeptidase A And L-Phenyl Lactate
pdb|2CTC|A Chain A, The High Resolution Crystal Structure Of The Complex
Between Carboxypeptidase A And L-Phenyl Lactate
Length = 307
Score = 25.8 bits (55), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 26/47 (55%), Gaps = 2/47 (4%)
Query: 88 EKSEPEPASCRTVEIVRGDTLWGLSRKYGVSIDAIKEANGLSGDTIY 134
+K+E + VE ++ +L+G S KYG I I +A+G S D Y
Sbjct: 215 DKTELNQVAKSAVEALK--SLYGTSYKYGSIITTIYQASGGSIDWSY 259
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.310 0.129 0.368
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,093,676
Number of Sequences: 62578
Number of extensions: 140986
Number of successful extensions: 143
Number of sequences better than 100.0: 11
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 136
Number of HSP's gapped (non-prelim): 11
length of query: 142
length of database: 14,973,337
effective HSP length: 89
effective length of query: 53
effective length of database: 9,403,895
effective search space: 498406435
effective search space used: 498406435
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 46 (22.3 bits)