BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 040221
(142 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P37710|ALYS_ENTFA Autolysin OS=Enterococcus faecalis (strain ATCC 700802 / V583)
GN=EF_0799 PE=3 SV=2
Length = 737
Score = 60.1 bits (144), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 31/67 (46%), Positives = 40/67 (59%), Gaps = 2/67 (2%)
Query: 77 QPIVTK--PSICTEKSEPEPASCRTVEIVRGDTLWGLSRKYGVSIDAIKEANGLSGDTIY 134
Q I+ K S S AS + + GD+LWGLS +YG+SI IK+ NGLSGDTIY
Sbjct: 670 QTIIVKKGASAGGNASSTNSASGKRHTVKSGDSLWGLSMQYGISIQKIKQLNGLSGDTIY 729
Query: 135 AGKKLII 141
G+ L +
Sbjct: 730 IGQTLKV 736
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 19/40 (47%), Positives = 30/40 (75%)
Query: 102 IVRGDTLWGLSRKYGVSIDAIKEANGLSGDTIYAGKKLII 141
I GDTL ++ +YGVS+ ++ NG+SGD I+AG+K+I+
Sbjct: 501 IKSGDTLNKIAAQYGVSVANLRSWNGISGDLIFAGQKIIV 540
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 33/55 (60%)
Query: 87 TEKSEPEPASCRTVEIVRGDTLWGLSRKYGVSIDAIKEANGLSGDTIYAGKKLII 141
T S + + + GDTL ++ +YGVS+ ++ NG+SGD I+ G+KLI+
Sbjct: 350 TGGSNNQSGTNTYYTVKSGDTLNKIAAQYGVSVANLRSWNGISGDLIFVGQKLIV 404
Score = 43.1 bits (100), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 18/37 (48%), Positives = 28/37 (75%)
Query: 105 GDTLWGLSRKYGVSIDAIKEANGLSGDTIYAGKKLII 141
GDTL ++ +YGVS+ ++ NG+SGD I+ G+KLI+
Sbjct: 436 GDTLNKIAAQYGVSVANLRSWNGISGDLIFVGQKLIV 472
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 28/40 (70%)
Query: 102 IVRGDTLWGLSRKYGVSIDAIKEANGLSGDTIYAGKKLII 141
I GDTL +S ++GVS+ ++ NG+ GD I+AG+ +I+
Sbjct: 635 IKSGDTLNKISAQFGVSVANLRSWNGIKGDLIFAGQTIIV 674
Score = 37.7 bits (86), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 28/40 (70%)
Query: 102 IVRGDTLWGLSRKYGVSIDAIKEANGLSGDTIYAGKKLII 141
I GDTL +S ++GVS+ ++ N +SG I+AG+K+I+
Sbjct: 569 IKSGDTLNKISAQFGVSVANLQAWNNISGSLIFAGQKIIV 608
>sp|P0C2T5|ACMA_LACLC Probable N-acetylmuramidase OS=Lactococcus lactis subsp. cremoris
GN=acmA PE=3 SV=1
Length = 437
Score = 55.5 bits (132), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 26/49 (53%), Positives = 33/49 (67%)
Query: 93 EPASCRTVEIVRGDTLWGLSRKYGVSIDAIKEANGLSGDTIYAGKKLII 141
+PAS +V++ GDTLW LS KY SI +K N LS DTIY G+ LI+
Sbjct: 314 KPASQTSVKVKSGDTLWALSVKYKTSIAQLKSWNHLSSDTIYIGQNLIV 362
Score = 49.3 bits (116), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 19/37 (51%), Positives = 28/37 (75%)
Query: 105 GDTLWGLSRKYGVSIDAIKEANGLSGDTIYAGKKLII 141
GDTLWG+S++YG+S+ I+ AN L IY G+KL++
Sbjct: 250 GDTLWGISQRYGISVAQIQSANNLKSTIIYIGQKLLL 286
Score = 46.6 bits (109), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 23/41 (56%), Positives = 29/41 (70%)
Query: 101 EIVRGDTLWGLSRKYGVSIDAIKEANGLSGDTIYAGKKLII 141
++V+GDTLWGLS+K G I +IK N LS DTI G+ L I
Sbjct: 396 KVVKGDTLWGLSQKSGSPIASIKAWNHLSSDTILIGQYLRI 436
>sp|A2RHZ5|ACMA_LACLM Probable N-acetylmuramidase OS=Lactococcus lactis subsp. cremoris
(strain MG1363) GN=acmA PE=3 SV=1
Length = 437
Score = 54.7 bits (130), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 26/49 (53%), Positives = 32/49 (65%)
Query: 93 EPASCRTVEIVRGDTLWGLSRKYGVSIDAIKEANGLSGDTIYAGKKLII 141
+P S TV++ GDTLW LS KY SI +K N LS DTIY G+ LI+
Sbjct: 314 KPTSQTTVKVKSGDTLWALSVKYKTSIAQLKSWNHLSSDTIYIGQNLIV 362
Score = 49.3 bits (116), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 19/37 (51%), Positives = 28/37 (75%)
Query: 105 GDTLWGLSRKYGVSIDAIKEANGLSGDTIYAGKKLII 141
GDTLWG+S++YG+S+ I+ AN L IY G+KL++
Sbjct: 250 GDTLWGISQRYGISVAQIQSANNLKSTIIYIGQKLVL 286
Score = 46.6 bits (109), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 23/41 (56%), Positives = 29/41 (70%)
Query: 101 EIVRGDTLWGLSRKYGVSIDAIKEANGLSGDTIYAGKKLII 141
++V+GDTLWGLS+K G I +IK N LS DTI G+ L I
Sbjct: 396 KVVKGDTLWGLSQKSGSPIASIKAWNHLSSDTILIGQYLRI 436
>sp|Q01836|P60_LISIN Probable endopeptidase p60 OS=Listeria innocua serovar 6a (strain
CLIP 11262) GN=iap PE=3 SV=2
Length = 467
Score = 54.7 bits (130), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 34/89 (38%), Positives = 44/89 (49%), Gaps = 2/89 (2%)
Query: 55 RNETTQP-QPIAESTQPIQPPPQQPIVTKPSICTEKSEPEPASCRTVEIVR-GDTLWGLS 112
+ ETTQ +P E+ ++ P Q P K P T V+ GDT+W LS
Sbjct: 154 KKETTQQVKPATEAKTEVKQPTTQQTAPAPKAAETKEAPVVDQNATTHNVKSGDTIWALS 213
Query: 113 RKYGVSIDAIKEANGLSGDTIYAGKKLII 141
KYGVS+ I N LS +IY G+KL I
Sbjct: 214 VKYGVSVQDIMSWNNLSSSSIYVGQKLAI 242
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 25/56 (44%), Positives = 36/56 (64%)
Query: 86 CTEKSEPEPASCRTVEIVRGDTLWGLSRKYGVSIDAIKEANGLSGDTIYAGKKLII 141
T + P AS TV + GDTLWG+++ G ++DAIK+AN L+ D I G+KL +
Sbjct: 16 VTAFAAPTIASASTVVVEAGDTLWGIAQSKGTTVDAIKKANNLTTDKIVPGQKLQV 71
>sp|Q9CIT4|ACMA_LACLA Probable N-acetylmuramidase OS=Lactococcus lactis subsp. lactis
(strain IL1403) GN=acmA PE=3 SV=1
Length = 439
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 24/49 (48%), Positives = 34/49 (69%)
Query: 93 EPASCRTVEIVRGDTLWGLSRKYGVSIDAIKEANGLSGDTIYAGKKLII 141
+PAS T+++ GDTLWGLS KY +I +K N L+ DTI+ G+ LI+
Sbjct: 316 KPASQTTIKVKSGDTLWGLSVKYKTTIAQLKSWNHLNSDTIFIGQNLIV 364
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 20/37 (54%), Positives = 28/37 (75%)
Query: 105 GDTLWGLSRKYGVSIDAIKEANGLSGDTIYAGKKLII 141
GDTLWG+S+KYG+S+ I+ AN L IY G+KL++
Sbjct: 248 GDTLWGISQKYGISVAQIQSANNLKSTVIYIGQKLVL 284
Score = 46.2 bits (108), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 23/41 (56%), Positives = 29/41 (70%)
Query: 101 EIVRGDTLWGLSRKYGVSIDAIKEANGLSGDTIYAGKKLII 141
++V+GDTLWGLS+K G I +IK N LS DTI G+ L I
Sbjct: 398 KVVKGDTLWGLSQKSGSPIASIKAWNHLSSDTILIGQYLRI 438
>sp|O34669|YOCH_BACSU Cell wall-binding protein YocH OS=Bacillus subtilis (strain 168)
GN=yocH PE=1 SV=1
Length = 287
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 22/45 (48%), Positives = 33/45 (73%)
Query: 95 ASCRTVEIVRGDTLWGLSRKYGVSIDAIKEANGLSGDTIYAGKKL 139
AS + + + +GDTLWG+S+K GV++ +KE N L+ D I AG+KL
Sbjct: 23 ASAKEITVQKGDTLWGISQKNGVNLKDLKEWNKLTSDKIIAGEKL 67
Score = 38.1 bits (87), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 26/40 (65%)
Query: 102 IVRGDTLWGLSRKYGVSIDAIKEANGLSGDTIYAGKKLII 141
I GDTL +++K+G +++ +K N LS D IYAG L +
Sbjct: 82 IKAGDTLSKIAQKFGTTVNNLKVWNNLSSDMIYAGSTLSV 121
>sp|P21171|P60_LISMO Probable endopeptidase p60 OS=Listeria monocytogenes serovar 1/2a
(strain ATCC BAA-679 / EGD-e) GN=iap PE=1 SV=2
Length = 484
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 33/90 (36%), Positives = 42/90 (46%), Gaps = 2/90 (2%)
Query: 53 KNRNETTQPQPIAESTQPIQPPPQQPIVTKPSICTEKSEPEPASCRTVEIVR-GDTLWGL 111
K T Q P AE+ ++ Q P + K P T V+ GDT+W L
Sbjct: 156 KKETTTQQAAPAAETKTEVKQTTQ-ATTPAPKVAETKETPVVDQNATTHAVKSGDTIWAL 214
Query: 112 SRKYGVSIDAIKEANGLSGDTIYAGKKLII 141
S KYGVS+ I N LS +IY G+KL I
Sbjct: 215 SVKYGVSVQDIMSWNNLSSSSIYVGQKLAI 244
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 25/56 (44%), Positives = 36/56 (64%)
Query: 86 CTEKSEPEPASCRTVEIVRGDTLWGLSRKYGVSIDAIKEANGLSGDTIYAGKKLII 141
T + P AS TV + GDTLWG+++ G ++DAIK+AN L+ D I G+KL +
Sbjct: 16 VTAFAAPTIASASTVVVEAGDTLWGIAQSKGTTVDAIKKANNLTTDKIVPGQKLQV 71
>sp|Q01837|P60_LISIV Probable endopeptidase p60 OS=Listeria ivanovii GN=iap PE=3 SV=1
Length = 524
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 25/56 (44%), Positives = 36/56 (64%)
Query: 86 CTEKSEPEPASCRTVEIVRGDTLWGLSRKYGVSIDAIKEANGLSGDTIYAGKKLII 141
T + P AS TV + GDTLWG+++ G ++DA+K+AN L+ D I G+KL I
Sbjct: 16 VTAFAAPTIASASTVVVEAGDTLWGIAQDKGTTVDALKKANNLTSDKIVPGQKLQI 71
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 26/46 (56%)
Query: 96 SCRTVEIVRGDTLWGLSRKYGVSIDAIKEANGLSGDTIYAGKKLII 141
+ T + GDT+W LS KYG S+ I N LS +IY G+ L +
Sbjct: 194 TASTYTVKSGDTIWALSSKYGTSVQNIMSWNNLSSSSIYVGQVLAV 239
Score = 31.2 bits (69), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 27/47 (57%), Gaps = 2/47 (4%)
Query: 95 ASCRTVEIVRGDTLWGLSRKYGVSIDAIKEANGLSGDTIYAGKKLII 141
AS TV+ GDTL ++ +G ++ IK NGL+ D + G+ L +
Sbjct: 311 ASSYTVK--SGDTLSKIATTFGTTVSKIKALNGLNSDNLQVGQVLKV 355
>sp|Q01839|P60_LISWE Probable endopeptidase p60 OS=Listeria welshimeri GN=iap PE=3 SV=1
Length = 524
Score = 50.8 bits (120), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 24/56 (42%), Positives = 36/56 (64%)
Query: 86 CTEKSEPEPASCRTVEIVRGDTLWGLSRKYGVSIDAIKEANGLSGDTIYAGKKLII 141
T + P AS TV + GDTLWG+++ G ++DA+K+AN L+ D I G+KL +
Sbjct: 16 VTAFAAPTIASASTVVVEAGDTLWGIAQSKGTTVDALKKANNLTSDKIVPGQKLQV 71
Score = 49.3 bits (116), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 31/89 (34%), Positives = 45/89 (50%), Gaps = 4/89 (4%)
Query: 55 RNETT-QPQPIAESTQPIQPPPQQPIVTKPSICTEKSEPEPASCRTVEIVR-GDTLWGLS 112
+ ETT Q P AE+ ++ P T P K+ P + T V+ GDT+W LS
Sbjct: 153 KQETTKQTAPAAETKTEVKQSTPAP--TAPKAAETKTAPVVDTNATTHTVKSGDTIWALS 210
Query: 113 RKYGVSIDAIKEANGLSGDTIYAGKKLII 141
KYG S+ + N LS +IY G+K+ +
Sbjct: 211 VKYGASVQDLMSWNNLSSSSIYVGQKIAV 239
>sp|P54421|LYTE_BACSU Probable peptidoglycan endopeptidase LytE OS=Bacillus subtilis
(strain 168) GN=lytE PE=1 SV=1
Length = 334
Score = 49.7 bits (117), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 23/48 (47%), Positives = 31/48 (64%)
Query: 94 PASCRTVEIVRGDTLWGLSRKYGVSIDAIKEANGLSGDTIYAGKKLII 141
AS +++++ +GDTLW LSRKY +I IK N L D IY G+ L I
Sbjct: 22 AASAQSIKVKKGDTLWDLSRKYDTTISKIKSENHLRSDIIYVGQTLSI 69
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 28/39 (71%)
Query: 101 EIVRGDTLWGLSRKYGVSIDAIKEANGLSGDTIYAGKKL 139
++ GD+LW +S+KYG++I+ +K+ NGL D + G+ L
Sbjct: 89 KVKSGDSLWKISKKYGMTINELKKLNGLKSDLLRVGQVL 127
Score = 31.2 bits (69), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 14/39 (35%), Positives = 23/39 (58%)
Query: 101 EIVRGDTLWGLSRKYGVSIDAIKEANGLSGDTIYAGKKL 139
++ GD+L ++ KYG ++ +K NGL D IY + L
Sbjct: 152 KVKSGDSLSKIASKYGTTVSKLKSLNGLKSDVIYVNQVL 190
>sp|Q01838|P60_LISSE Probable endopeptidase p60 OS=Listeria seeligeri GN=iap PE=3 SV=1
Length = 523
Score = 49.3 bits (116), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 24/56 (42%), Positives = 36/56 (64%)
Query: 86 CTEKSEPEPASCRTVEIVRGDTLWGLSRKYGVSIDAIKEANGLSGDTIYAGKKLII 141
T + P AS TV + GDTLWG+++ G ++DA+K+AN L+ D I G+KL +
Sbjct: 16 VTAFAAPTIASASTVVVEAGDTLWGIAQDNGTTVDALKKANKLTTDKIVPGQKLQV 71
Score = 49.3 bits (116), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 44/88 (50%), Gaps = 1/88 (1%)
Query: 55 RNETTQPQPIAESTQPIQPPPQQPIVTKPSICTEKSEPEPASCRTVEIVR-GDTLWGLSR 113
+ ETTQ P ++ ++ K ++ T+ + P + T V+ GDT+W LS
Sbjct: 154 QEETTQAAPAQQTKTEVKQATPAATTEKDAVETKTTAPAVDTNATTHTVKSGDTIWALSV 213
Query: 114 KYGVSIDAIKEANGLSGDTIYAGKKLII 141
KYG S+ + N LS +IY G+ + +
Sbjct: 214 KYGASVQDLMSWNNLSSSSIYVGQNIAV 241
Score = 30.8 bits (68), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 26/47 (55%), Gaps = 2/47 (4%)
Query: 95 ASCRTVEIVRGDTLWGLSRKYGVSIDAIKEANGLSGDTIYAGKKLII 141
AS TV+ GDTL ++ +G ++ IK NGL+ D + G L +
Sbjct: 317 ASSYTVK--SGDTLGKIASTFGTTVSKIKALNGLTSDNLQVGDVLKV 361
>sp|Q01835|P60_LISGR Probable endopeptidase p60 OS=Listeria grayi GN=iap PE=3 SV=1
Length = 511
Score = 49.3 bits (116), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 26/64 (40%), Positives = 36/64 (56%), Gaps = 1/64 (1%)
Query: 79 IVTKPSIC-TEKSEPEPASCRTVEIVRGDTLWGLSRKYGVSIDAIKEANGLSGDTIYAGK 137
IV+ I T + P S TV + GDTLWG++ K G ++D +K+ N L D I G+
Sbjct: 8 IVSAAGIAVTAFAAPSVVSANTVVVASGDTLWGIASKTGTTVDQLKQLNKLDSDRIVPGQ 67
Query: 138 KLII 141
KL I
Sbjct: 68 KLTI 71
Score = 45.8 bits (107), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 38/73 (52%), Gaps = 13/73 (17%)
Query: 78 PIVTKPSICTEKSEPEPAS-----------CRTVEIVRGDTLWGLSRKYGVSIDAIKEAN 126
P+VTK T K+E + A+ T ++ GDT+W LS KYGV + + E N
Sbjct: 146 PVVTKA--VTHKAEAKVAATSTHAVKVDTNASTYKVKSGDTIWALSVKYGVPVQKLIEWN 203
Query: 127 GLSGDTIYAGKKL 139
LS +IY G+ +
Sbjct: 204 NLSSSSIYVGQTI 216
>sp|O31852|CWLS_BACSU D-gamma-glutamyl-meso-diaminopimelic acid endopeptidase CwlS
OS=Bacillus subtilis (strain 168) GN=cwlS PE=1 SV=1
Length = 414
Score = 49.3 bits (116), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 31/49 (63%)
Query: 94 PASCRTVEIVRGDTLWGLSRKYGVSIDAIKEANGLSGDTIYAGKKLIIP 142
PA +T+++ GD+LW LSR+Y +I A+K N L +Y G+ L +P
Sbjct: 23 PAEAKTIKVKSGDSLWKLSRQYDTTISALKSENKLKSTVLYVGQSLKVP 71
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/102 (26%), Positives = 49/102 (48%), Gaps = 9/102 (8%)
Query: 40 IAISILKALNPLNKNRNETTQPQPIAESTQPIQPPPQQPIVTKPSICTEKSEPEPASCRT 99
+ ++ LK LN L ++T P+ + + P KPS P+ T
Sbjct: 176 MTVAELKTLNGLT---SDTLYPKQVLKIKGSSSPKNGNSGSKKPS------NSNPSKTTT 226
Query: 100 VEIVRGDTLWGLSRKYGVSIDAIKEANGLSGDTIYAGKKLII 141
++ GD+LW ++ + GV++ +I++ N LS D + G+ L I
Sbjct: 227 YKVKAGDSLWKIANRLGVTVQSIRDKNNLSSDVLQIGQVLTI 268
Score = 36.2 bits (82), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 26/43 (60%)
Query: 99 TVEIVRGDTLWGLSRKYGVSIDAIKEANGLSGDTIYAGKKLII 141
T + GD+LW +++ + +S+ +K N LS D I G+KL I
Sbjct: 89 TYTVAYGDSLWMIAKNHKMSVSELKSLNSLSSDLIRPGQKLKI 131
Score = 32.7 bits (73), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 12/36 (33%), Positives = 22/36 (61%)
Query: 99 TVEIVRGDTLWGLSRKYGVSIDAIKEANGLSGDTIY 134
T + GD+LW ++ +++ +K NGL+ DT+Y
Sbjct: 158 TYTVKLGDSLWKIANSLNMTVAELKTLNGLTSDTLY 193
>sp|Q5PQ30|LYSM1_XENLA LysM and putative peptidoglycan-binding domain-containing protein 1
OS=Xenopus laevis GN=lysmd1 PE=2 SV=1
Length = 215
Score = 45.8 bits (107), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 25/52 (48%), Positives = 34/52 (65%), Gaps = 3/52 (5%)
Query: 94 PASCRTVE--IVRGDTLWGLSRKYGVSIDAIKEANGL-SGDTIYAGKKLIIP 142
PA R +E + GDTL GL+ +YGVS++ IK AN L + D+I+ K L IP
Sbjct: 31 PAQIRKLEHQVQPGDTLQGLALRYGVSMEQIKRANRLYTNDSIFLKKSLYIP 82
>sp|O07532|LYTF_BACSU Peptidoglycan endopeptidase LytF OS=Bacillus subtilis (strain 168)
GN=lytF PE=1 SV=2
Length = 488
Score = 43.9 bits (102), Expect = 3e-04, Method: Composition-based stats.
Identities = 19/49 (38%), Positives = 29/49 (59%)
Query: 94 PASCRTVEIVRGDTLWGLSRKYGVSIDAIKEANGLSGDTIYAGKKLIIP 142
PA T+++ GD+LW L++ Y S+ A+ AN LS + G+ L IP
Sbjct: 23 PAEAATIKVKSGDSLWKLAQTYNTSVAALTSANHLSTTVLSIGQTLTIP 71
Score = 38.9 bits (89), Expect = 0.011, Method: Composition-based stats.
Identities = 15/37 (40%), Positives = 25/37 (67%)
Query: 105 GDTLWGLSRKYGVSIDAIKEANGLSGDTIYAGKKLII 141
GD+LW +++K+ V+ I+E N L D + G+KL+I
Sbjct: 314 GDSLWVIAQKFNVTAQQIREKNNLKTDVLQVGQKLVI 350
Score = 38.5 bits (88), Expect = 0.014, Method: Composition-based stats.
Identities = 15/35 (42%), Positives = 26/35 (74%)
Query: 105 GDTLWGLSRKYGVSIDAIKEANGLSGDTIYAGKKL 139
GD+LW ++ ++ +++ +K+ NGLS D I AG+KL
Sbjct: 99 GDSLWLIANEFKMTVQELKKLNGLSSDLIRAGQKL 133
Score = 34.7 bits (78), Expect = 0.17, Method: Composition-based stats.
Identities = 16/41 (39%), Positives = 24/41 (58%)
Query: 99 TVEIVRGDTLWGLSRKYGVSIDAIKEANGLSGDTIYAGKKL 139
T ++ GD+LW ++ K +SI +K N L DTIY + L
Sbjct: 175 TYKVQLGDSLWKIANKVNMSIAELKVLNNLKSDTIYVNQVL 215
Score = 34.7 bits (78), Expect = 0.18, Method: Composition-based stats.
Identities = 12/35 (34%), Positives = 21/35 (60%)
Query: 105 GDTLWGLSRKYGVSIDAIKEANGLSGDTIYAGKKL 139
GD+LW ++ Y +++ I+ N L D +Y G+ L
Sbjct: 247 GDSLWKIANNYNLTVQQIRNINNLKSDVLYVGQVL 281
>sp|Q6B4J5|EXSA_BACCE Spore coat assembly protein ExsA OS=Bacillus cereus GN=exsA PE=2
SV=1
Length = 643
Score = 43.1 bits (100), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 21/46 (45%), Positives = 30/46 (65%), Gaps = 3/46 (6%)
Query: 100 VEIV-RGDTLWGLSRKYGVSIDAIKEAN-GLSG-DTIYAGKKLIIP 142
+ IV +GDTLW +++KYGV D +K+ N LS D I G K+ +P
Sbjct: 3 IHIVQKGDTLWKIAKKYGVDFDTLKKTNTQLSNPDLIMPGMKIKVP 48
>sp|P39046|MUR2_ENTHA Muramidase-2 OS=Enterococcus hirae (strain ATCC 9790 / DSM 20160 /
JCM 8729 / LMG 6399 / NBRC 3181 / NCIMB 6459 / NCDO
1258) GN=EHR_05900 PE=1 SV=1
Length = 666
Score = 42.7 bits (99), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 41/68 (60%), Gaps = 3/68 (4%)
Query: 74 PPQQPIVTKPSICTEKSEPEPASCRTVEIVRGDTLWGLSRKYGVSIDAIKEANGLSGDTI 133
P Q+ IV K T +S P + +T + G+++WG++ +G++++ + E N + + I
Sbjct: 600 PGQEVIVKKG---TAQSTPAKSDEKTYTVKAGESVWGVADSHGITMNQLIEWNNIKNNFI 656
Query: 134 YAGKKLII 141
Y G++LI+
Sbjct: 657 YPGQQLIV 664
Score = 38.9 bits (89), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 30/46 (65%)
Query: 96 SCRTVEIVRGDTLWGLSRKYGVSIDAIKEANGLSGDTIYAGKKLII 141
S T + G+++W +S K+G+S++ + + N + + IY G+KLI+
Sbjct: 410 SGSTYTVKAGESVWSVSNKFGISMNQLIQWNNIKNNFIYPGQKLIV 455
Score = 38.5 bits (88), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 29/43 (67%)
Query: 99 TVEIVRGDTLWGLSRKYGVSIDAIKEANGLSGDTIYAGKKLII 141
T + G+++WG++ K G+S++ + E N + + IY G+KLI+
Sbjct: 488 TYTVKAGESVWGVANKNGISMNQLIEWNNIKNNFIYPGQKLIV 530
Score = 38.1 bits (87), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 25/37 (67%)
Query: 105 GDTLWGLSRKYGVSIDAIKEANGLSGDTIYAGKKLII 141
GD++WG+S +G+++ + E N + + IY G+KL I
Sbjct: 262 GDSVWGISHSFGITMAQLIEWNNIKNNFIYPGQKLTI 298
Score = 36.2 bits (82), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 18/77 (23%), Positives = 39/77 (50%), Gaps = 7/77 (9%)
Query: 65 AESTQPIQPPPQQPIVTKPSICTEKSEPEPASCRTVEIVRGDTLWGLSRKYGVSIDAIKE 124
A +T I+P P T P+ + + G+++WG++ K+ +++D + E
Sbjct: 537 ASATATIKPTASTPASTTPTASSTGDTK-------YTVKAGESVWGVANKHHITMDQLIE 589
Query: 125 ANGLSGDTIYAGKKLII 141
N + + IY G+++I+
Sbjct: 590 WNNIKNNFIYPGQEVIV 606
Score = 33.9 bits (76), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 10/37 (27%), Positives = 26/37 (70%)
Query: 105 GDTLWGLSRKYGVSIDAIKEANGLSGDTIYAGKKLII 141
GD++W ++ +G+S++ + E N + + +Y G++L++
Sbjct: 343 GDSVWKIANDHGISMNQLIEWNNIKNNFVYPGQQLVV 379
>sp|A0JNI1|LYSM1_BOVIN LysM and putative peptidoglycan-binding domain-containing protein 1
OS=Bos taurus GN=LYSMD1 PE=2 SV=1
Length = 225
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/39 (53%), Positives = 28/39 (71%), Gaps = 1/39 (2%)
Query: 105 GDTLWGLSRKYGVSIDAIKEANGL-SGDTIYAGKKLIIP 142
GDTL GL+ KYGV+++ IK AN L + D+I+ K L IP
Sbjct: 47 GDTLAGLALKYGVTMEQIKRANRLYTNDSIFLKKTLHIP 85
>sp|Q9N012|LYSM1_MACFA LysM and putative peptidoglycan-binding domain-containing protein 1
OS=Macaca fascicularis GN=LYSMD1 PE=2 SV=1
Length = 227
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/39 (53%), Positives = 28/39 (71%), Gaps = 1/39 (2%)
Query: 105 GDTLWGLSRKYGVSIDAIKEANGL-SGDTIYAGKKLIIP 142
GDTL GL+ KYGV+++ IK AN L + D+I+ K L IP
Sbjct: 47 GDTLAGLALKYGVTMEQIKRANRLYTNDSIFLKKTLYIP 85
>sp|Q96S90|LYSM1_HUMAN LysM and putative peptidoglycan-binding domain-containing protein 1
OS=Homo sapiens GN=LYSMD1 PE=1 SV=1
Length = 227
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/39 (53%), Positives = 28/39 (71%), Gaps = 1/39 (2%)
Query: 105 GDTLWGLSRKYGVSIDAIKEANGL-SGDTIYAGKKLIIP 142
GDTL GL+ KYGV+++ IK AN L + D+I+ K L IP
Sbjct: 47 GDTLAGLALKYGVTMEQIKRANRLYTNDSIFLKKTLYIP 85
>sp|Q1JQA8|LYSM2_BOVIN LysM and putative peptidoglycan-binding domain-containing protein 2
OS=Bos taurus GN=LYSMD2 PE=2 SV=1
Length = 215
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/39 (53%), Positives = 27/39 (69%), Gaps = 1/39 (2%)
Query: 105 GDTLWGLSRKYGVSIDAIKEANGL-SGDTIYAGKKLIIP 142
GDTL G++ KYGVS++ IK AN L + D I+ K L IP
Sbjct: 79 GDTLQGIALKYGVSMEQIKRANKLFTNDCIFLKKTLNIP 117
>sp|Q9D7V2|LYSM2_MOUSE LysM and putative peptidoglycan-binding domain-containing protein 2
OS=Mus musculus GN=Lysmd2 PE=2 SV=2
Length = 215
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/39 (51%), Positives = 27/39 (69%), Gaps = 1/39 (2%)
Query: 105 GDTLWGLSRKYGVSIDAIKEANGL-SGDTIYAGKKLIIP 142
GDTL G++ KYGV+++ IK AN L + D I+ K L IP
Sbjct: 78 GDTLQGIALKYGVTMEQIKRANKLFTNDCIFLKKTLSIP 116
>sp|Q8IV50|LYSM2_HUMAN LysM and putative peptidoglycan-binding domain-containing protein 2
OS=Homo sapiens GN=LYSMD2 PE=1 SV=1
Length = 215
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/48 (47%), Positives = 31/48 (64%), Gaps = 3/48 (6%)
Query: 98 RTVE--IVRGDTLWGLSRKYGVSIDAIKEANGL-SGDTIYAGKKLIIP 142
R VE + GDTL G++ KYGV+++ IK AN L + D I+ K L IP
Sbjct: 69 RHVEHRVRAGDTLQGIALKYGVTMEQIKRANKLFTNDCIFLKKTLNIP 116
>sp|Q5HZA4|LYSM1_RAT LysM and putative peptidoglycan-binding domain-containing protein 1
OS=Rattus norvegicus GN=Lysmd1 PE=2 SV=1
Length = 227
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 20/39 (51%), Positives = 27/39 (69%), Gaps = 1/39 (2%)
Query: 105 GDTLWGLSRKYGVSIDAIKEANGL-SGDTIYAGKKLIIP 142
GDTL GL+ KYGV+++ IK N L + D+I+ K L IP
Sbjct: 47 GDTLAGLALKYGVTMEQIKRTNRLYTNDSIFLKKTLYIP 85
>sp|Q9D0E3|LYSM1_MOUSE LysM and putative peptidoglycan-binding domain-containing protein 1
OS=Mus musculus GN=Lysmd1 PE=1 SV=1
Length = 226
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 20/39 (51%), Positives = 27/39 (69%), Gaps = 1/39 (2%)
Query: 105 GDTLWGLSRKYGVSIDAIKEANGL-SGDTIYAGKKLIIP 142
GDTL GL+ KYGV+++ IK N L + D+I+ K L IP
Sbjct: 47 GDTLAGLALKYGVTMEQIKRTNRLYTNDSIFLKKTLYIP 85
>sp|O05495|YDHD_BACSU Putative sporulation-specific glycosylase YdhD OS=Bacillus subtilis
(strain 168) GN=ydhD PE=1 SV=2
Length = 420
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 17/38 (44%), Positives = 25/38 (65%)
Query: 105 GDTLWGLSRKYGVSIDAIKEANGLSGDTIYAGKKLIIP 142
GD+L+ + R+YG S+D I+ NGL I G+ L+IP
Sbjct: 9 GDSLFSIGRRYGASVDQIRGVNGLDETNIVPGQALLIP 46
>sp|Q8CMN2|SLE1_STAES N-acetylmuramoyl-L-alanine amidase sle1 OS=Staphylococcus
epidermidis (strain ATCC 12228) GN=sle1 PE=3 SV=1
Length = 324
Score = 39.7 bits (91), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 39/71 (54%), Gaps = 2/71 (2%)
Query: 74 PPQQPIVTKPSICTEKSEPEPASCRT--VEIVRGDTLWGLSRKYGVSIDAIKEANGLSGD 131
P Q+ V+ + + +++ +S RT + GD+L ++ KYG + I + NGL+
Sbjct: 121 PGQKLKVSGKATSSSRAKASGSSGRTATYTVKYGDSLSAIASKYGTTYQKIMQLNGLTNF 180
Query: 132 TIYAGKKLIIP 142
IY G+KL +P
Sbjct: 181 FIYPGQKLKVP 191
Score = 39.3 bits (90), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 29/45 (64%), Gaps = 2/45 (4%)
Query: 90 SEPEPASCRTVEIVRGDTLWGLSRKYGVSIDAIKEANGLSGDTIY 134
+ + A+ TV+ G+++W +S KYG+SI +K NGL+ + I+
Sbjct: 21 THAQAATTHTVK--SGESVWSISHKYGISIAKLKSLNGLTSNLIF 63
Score = 34.3 bits (77), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 31/102 (30%), Positives = 46/102 (45%), Gaps = 22/102 (21%)
Query: 39 GIAISILKALNPLNKNRNETTQPQPIAESTQPIQPPPQQPIVTKPSICTEKSEPEPASCR 98
GI+I+ LK+LN L N + P Q V+ S S +
Sbjct: 45 GISIAKLKSLNGLTSN----------------LIFPNQVLKVSGSS-----SRATSTNSG 83
Query: 99 TVEIVR-GDTLWGLSRKYGVSIDAIKEANGLSGDTIYAGKKL 139
TV V+ GD+L ++ KYG + I + NGL+ I+ G+KL
Sbjct: 84 TVYTVKAGDSLSSIAAKYGTTYQKIMQLNGLNNYLIFPGQKL 125
>sp|Q5HRU2|SLE1_STAEQ N-acetylmuramoyl-L-alanine amidase sle1 OS=Staphylococcus
epidermidis (strain ATCC 35984 / RP62A) GN=sle1 PE=3
SV=1
Length = 324
Score = 39.7 bits (91), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 39/71 (54%), Gaps = 2/71 (2%)
Query: 74 PPQQPIVTKPSICTEKSEPEPASCRT--VEIVRGDTLWGLSRKYGVSIDAIKEANGLSGD 131
P Q+ V+ + + +++ +S RT + GD+L ++ KYG + I + NGL+
Sbjct: 121 PGQKLKVSGKATSSSRAKASGSSGRTATYTVKYGDSLSAIASKYGTTYQKIMQLNGLTNF 180
Query: 132 TIYAGKKLIIP 142
IY G+KL +P
Sbjct: 181 FIYPGQKLKVP 191
Score = 39.3 bits (90), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 29/45 (64%), Gaps = 2/45 (4%)
Query: 90 SEPEPASCRTVEIVRGDTLWGLSRKYGVSIDAIKEANGLSGDTIY 134
+ + A+ TV+ G+++W +S KYG+SI +K NGL+ + I+
Sbjct: 21 THAQAATTHTVK--SGESVWSISHKYGISIAKLKSLNGLTSNLIF 63
Score = 34.3 bits (77), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 31/102 (30%), Positives = 46/102 (45%), Gaps = 22/102 (21%)
Query: 39 GIAISILKALNPLNKNRNETTQPQPIAESTQPIQPPPQQPIVTKPSICTEKSEPEPASCR 98
GI+I+ LK+LN L N + P Q V+ S S +
Sbjct: 45 GISIAKLKSLNGLTSN----------------LIFPNQVLKVSGSS-----SRATSTNSG 83
Query: 99 TVEIVR-GDTLWGLSRKYGVSIDAIKEANGLSGDTIYAGKKL 139
TV V+ GD+L ++ KYG + I + NGL+ I+ G+KL
Sbjct: 84 TVYTVKAGDSLSSIAAKYGTTYQKIMQLNGLNNYLIFPGQKL 125
>sp|Q4L3C1|SLE1_STAHJ N-acetylmuramoyl-L-alanine amidase sle1 OS=Staphylococcus
haemolyticus (strain JCSC1435) GN=sle1 PE=3 SV=1
Length = 329
Score = 39.3 bits (90), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Query: 92 PEPASCRTVEIVR-GDTLWGLSRKYGVSIDAIKEANGLSGDTIY 134
A T VR G++LW +S YG+++ +K NGLS + I+
Sbjct: 21 AHQAEASTTHTVRSGESLWSISHHYGITVSKLKSLNGLSSNLIF 64
Score = 32.3 bits (72), Expect = 1.00, Method: Compositional matrix adjust.
Identities = 26/101 (25%), Positives = 40/101 (39%), Gaps = 17/101 (16%)
Query: 39 GIAISILKALNPLNKNRNETTQPQPIAESTQPIQPPPQQPIVTKPSICTEKSEPEPASCR 98
GI +S LK+LN L+ N P Q + S S
Sbjct: 46 GITVSKLKSLNGLSSN-----------------LIFPNQVLKVSGSSNYSSRSNYGNSSS 88
Query: 99 TVEIVRGDTLWGLSRKYGVSIDAIKEANGLSGDTIYAGKKL 139
T + GD+L ++ +YG + I NGL+ I+ G++L
Sbjct: 89 TYTVRAGDSLSSIASRYGTTYRHIMNLNGLNSFLIFPGQQL 129
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 23/41 (56%)
Query: 99 TVEIVRGDTLWGLSRKYGVSIDAIKEANGLSGDTIYAGKKL 139
T + GD+L ++ +YG + I NGL+ IY G+KL
Sbjct: 153 TYTVRYGDSLSSIASRYGTTYQHIMRLNGLNNFFIYPGQKL 193
>sp|Q9Z7W1|Y593_CHLPN Uncharacterized protein CPn_0593/CP_0155/CPj0593/CpB0616
OS=Chlamydia pneumoniae GN=CPn_0593 PE=3 SV=1
Length = 362
Score = 39.3 bits (90), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 27/38 (71%)
Query: 105 GDTLWGLSRKYGVSIDAIKEANGLSGDTIYAGKKLIIP 142
GD+LW +++++G+ +D I + NGL+ ++ GK L +P
Sbjct: 321 GDSLWLIAKRFGIPMDKIIQKNGLNHHRLFPGKVLKLP 358
>sp|Q3B7I8|LYSM2_XENTR LysM and putative peptidoglycan-binding domain-containing protein 2
OS=Xenopus tropicalis GN=lysmd2 PE=2 SV=1
Length = 207
Score = 38.9 bits (89), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 24/52 (46%), Positives = 32/52 (61%), Gaps = 3/52 (5%)
Query: 94 PASCRTVE--IVRGDTLWGLSRKYGVSIDAIKEANGL-SGDTIYAGKKLIIP 142
P S R +E + DTL G++ KYGV+++ IK AN L S D I+ K L IP
Sbjct: 55 PLSERYIEHRLSPSDTLQGIALKYGVTMEQIKRANKLFSTDCIFLRKSLNIP 106
>sp|Q3KPL3|LYSM2_XENLA LysM and putative peptidoglycan-binding domain-containing protein 2
OS=Xenopus laevis GN=lysmd2 PE=2 SV=2
Length = 206
Score = 38.5 bits (88), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 20/38 (52%), Positives = 26/38 (68%), Gaps = 1/38 (2%)
Query: 106 DTLWGLSRKYGVSIDAIKEANGL-SGDTIYAGKKLIIP 142
DTL G++ KYGV+++ IK AN L S D I+ K L IP
Sbjct: 67 DTLQGIALKYGVTMEQIKRANKLFSTDCIFLRKSLNIP 104
>sp|F4IB81|LYK3_ARATH LysM domain receptor-like kinase 3 OS=Arabidopsis thaliana GN=LYK3
PE=2 SV=1
Length = 651
Score = 37.0 bits (84), Expect = 0.038, Method: Composition-based stats.
Identities = 19/39 (48%), Positives = 27/39 (69%), Gaps = 1/39 (2%)
Query: 105 GDTLWGLSRKYGVSIDAIKEANG-LSGDTIYAGKKLIIP 142
GD++ LS ++GVS+D I++ NG L+ D I AG L IP
Sbjct: 149 GDSVQSLSSRFGVSMDRIEDVNGILNLDNITAGDLLYIP 187
>sp|O32062|SAFA_BACSU SpoIVD-associated factor A OS=Bacillus subtilis (strain 168)
GN=safA PE=1 SV=1
Length = 387
Score = 37.0 bits (84), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 28/43 (65%), Gaps = 2/43 (4%)
Query: 102 IVRGDTLWGLSRKYGVSIDAIKEAN-GLSG-DTIYAGKKLIIP 142
+ +GD+LW ++ KYGV ++ +K+ N LS D I G K+ +P
Sbjct: 6 VQKGDSLWKIAEKYGVDVEEVKKLNTQLSNPDLIMPGMKIKVP 48
>sp|Q6DEF4|LYSM2_DANRE LysM and putative peptidoglycan-binding domain-containing protein 2
OS=Danio rerio GN=lysmd2 PE=2 SV=1
Length = 208
Score = 36.6 bits (83), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 18/42 (42%), Positives = 26/42 (61%), Gaps = 1/42 (2%)
Query: 102 IVRGDTLWGLSRKYGVSIDAIKEANGL-SGDTIYAGKKLIIP 142
+ G+TL G++ KYGV+++ IK N L S D I+ L IP
Sbjct: 69 VTDGETLQGIALKYGVTMEQIKRVNKLFSNDCIFLRNTLSIP 110
>sp|Q49UX4|SLE1_STAS1 N-acetylmuramoyl-L-alanine amidase sle1 OS=Staphylococcus
saprophyticus subsp. saprophyticus (strain ATCC 15305 /
DSM 20229) GN=sle1 PE=3 SV=1
Length = 327
Score = 36.2 bits (82), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 40/88 (45%), Gaps = 2/88 (2%)
Query: 52 NKNRNETTQPQPIAESTQPIQPPPQQPIVTKPSICTEKSEPEPASCRTVEIVRGDTLWGL 111
NK + + + T + P Q V+ + + S S TV+ GDTL G+
Sbjct: 42 NKYNMSVAKLKSLNNLTSNVIFPNQSLKVSGSTSSSTSSNTSTGSTYTVK--SGDTLSGI 99
Query: 112 SRKYGVSIDAIKEANGLSGDTIYAGKKL 139
+ KYG + I NGLS IY G+KL
Sbjct: 100 AAKYGTTYQKIMSLNGLSNFNIYPGQKL 127
Score = 33.9 bits (76), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 12/36 (33%), Positives = 23/36 (63%)
Query: 99 TVEIVRGDTLWGLSRKYGVSIDAIKEANGLSGDTIY 134
T ++ GD+LW ++ KY +S+ +K N L+ + I+
Sbjct: 28 TYKVKSGDSLWSIANKYNMSVAKLKSLNNLTSNVIF 63
Score = 31.2 bits (69), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 21/35 (60%)
Query: 105 GDTLWGLSRKYGVSIDAIKEANGLSGDTIYAGKKL 139
GD+L ++ KYG + I NGL+ IY G+KL
Sbjct: 157 GDSLSAIAAKYGTTYQKIMSLNGLTNFNIYPGQKL 191
>sp|C0H403|YKZQ_BACSU Uncharacterized protein YkzQ OS=Bacillus subtilis (strain 168)
GN=ykzQ PE=4 SV=1
Length = 75
Score = 35.4 bits (80), Expect = 0.100, Method: Compositional matrix adjust.
Identities = 13/44 (29%), Positives = 23/44 (52%)
Query: 94 PASCRTVEIVRGDTLWGLSRKYGVSIDAIKEANGLSGDTIYAGK 137
P + + GDTLW +++ + + + + N LS D IY G+
Sbjct: 25 PVTYEVYHVESGDTLWTIAKSFEIPVQQLMNLNKLSSDRIYPGQ 68
>sp|Q8CP59|EBPS_STAES Probable elastin-binding protein EbpS OS=Staphylococcus epidermidis
(strain ATCC 12228) GN=ebpS PE=4 SV=2
Length = 460
Score = 34.7 bits (78), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 15/32 (46%), Positives = 21/32 (65%), Gaps = 4/32 (12%)
Query: 115 YG----VSIDAIKEANGLSGDTIYAGKKLIIP 142
YG ++D IK ANGLS + I+ G+ L+IP
Sbjct: 428 YGEGTQANVDKIKRANGLSSNNIHNGQTLVIP 459
>sp|Q5HP65|EBPS_STAEQ Probable elastin-binding protein EbpS OS=Staphylococcus epidermidis
(strain ATCC 35984 / RP62A) GN=ebpS PE=4 SV=1
Length = 460
Score = 34.7 bits (78), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 15/32 (46%), Positives = 21/32 (65%), Gaps = 4/32 (12%)
Query: 115 YG----VSIDAIKEANGLSGDTIYAGKKLIIP 142
YG ++D IK ANGLS + I+ G+ L+IP
Sbjct: 428 YGEGTQANVDKIKRANGLSSNNIHNGQTLVIP 459
>sp|A8FDP8|YNEA_BACP2 Cell division suppressor protein YneA OS=Bacillus pumilus (strain
SAFR-032) GN=yneA PE=3 SV=1
Length = 103
Score = 34.7 bits (78), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 31/67 (46%), Gaps = 8/67 (11%)
Query: 84 SICTEKSEPEPASCRTVEIVRGDTLWGLSRKYGVS--------IDAIKEANGLSGDTIYA 135
S+ S +P +E+ GDTLWGL+ + S ID + + N L+ I
Sbjct: 22 SLIAVTSHNDPNQYVKIEVQSGDTLWGLADQVNDSKSIDKNAFIDWVTQHNDLASTEIQP 81
Query: 136 GKKLIIP 142
G L+IP
Sbjct: 82 GDILVIP 88
>sp|Q5ZNC8|YNEA_BACMD Cell division suppressor protein YneA OS=Bacillus megaterium
(strain DSM 319) GN=yneA PE=3 SV=1
Length = 109
Score = 34.7 bits (78), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 21/55 (38%), Positives = 28/55 (50%), Gaps = 11/55 (20%)
Query: 99 TVEIVRGDTLWGLSRKYGVS--------IDAIKEANGLSGDTIYA---GKKLIIP 142
TV I +GDTLW LS KY + +++ N L+ DT + G KL IP
Sbjct: 41 TVTITKGDTLWELSNKYHNHHHLTTNEFVKWVEDVNDLNSDTAQSLSPGDKLYIP 95
>sp|A4IMK2|YNEA_GEOTN Cell division suppressor protein YneA OS=Geobacillus
thermodenitrificans (strain NG80-2) GN=yneA PE=3 SV=2
Length = 101
Score = 34.3 bits (77), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 31/52 (59%), Gaps = 8/52 (15%)
Query: 99 TVEIVRGDTLWGLSRKY----GVS----IDAIKEANGLSGDTIYAGKKLIIP 142
TV + GDTLWGL+++Y G+S I + + N L + AG++++IP
Sbjct: 36 TVTVASGDTLWGLAKQYEPAHGLSPDEFIRWVVDVNRLPSSRLTAGEQIVIP 87
>sp|Q2YVT4|SLE1_STAAB N-acetylmuramoyl-L-alanine amidase sle1 OS=Staphylococcus aureus
(strain bovine RF122 / ET3-1) GN=sle1 PE=3 SV=1
Length = 335
Score = 33.9 bits (76), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 21/30 (70%)
Query: 105 GDTLWGLSRKYGVSIDAIKEANGLSGDTIY 134
G+++W +S KYG+SI +K N L+ + I+
Sbjct: 34 GESVWAISNKYGISIAKLKSLNNLTSNLIF 63
Score = 30.4 bits (67), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 25/45 (55%), Gaps = 2/45 (4%)
Query: 95 ASCRTVEIVRGDTLWGLSRKYGVSIDAIKEANGLSGDTIYAGKKL 139
S TV+ GD+L ++ KYG + I NGL+ IY G+KL
Sbjct: 157 GSYYTVQ--AGDSLSLIASKYGTTYQKIMSLNGLNNFFIYPGQKL 199
Score = 30.4 bits (67), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 25/45 (55%), Gaps = 2/45 (4%)
Query: 95 ASCRTVEIVRGDTLWGLSRKYGVSIDAIKEANGLSGDTIYAGKKL 139
S TV+ GD+L ++ KYG + I NGL+ IY G+KL
Sbjct: 90 GSYYTVQ--AGDSLSLIASKYGTTYQNIMRLNGLNNFFIYPGQKL 132
>sp|Q9FZ32|FB60_ARATH F-box protein At1g55000 OS=Arabidopsis thaliana GN=At1g55000 PE=1
SV=1
Length = 221
Score = 33.9 bits (76), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
Query: 101 EIVRGDTLWGLSRKYGVSIDAIKEANGLSGDT-IYAGKKLIIP 142
I RGD++ L+ KY V + IK N + D IY+ +L+IP
Sbjct: 77 RICRGDSVTSLAVKYAVQVMDIKRLNNMMSDHGIYSRDRLLIP 119
>sp|Q6GJK9|SLE1_STAAR N-acetylmuramoyl-L-alanine amidase sle1 OS=Staphylococcus aureus
(strain MRSA252) GN=sle1 PE=3 SV=1
Length = 334
Score = 33.5 bits (75), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 21/30 (70%)
Query: 105 GDTLWGLSRKYGVSIDAIKEANGLSGDTIY 134
G+++W +S KYG+SI +K N L+ + I+
Sbjct: 34 GESVWAISNKYGISIAKLKSLNNLTSNLIF 63
Score = 30.4 bits (67), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 25/45 (55%), Gaps = 2/45 (4%)
Query: 95 ASCRTVEIVRGDTLWGLSRKYGVSIDAIKEANGLSGDTIYAGKKL 139
S TV+ GD+L ++ KYG + I NGL+ IY G+KL
Sbjct: 90 GSYYTVQ--AGDSLSLIASKYGTTYQNIMRLNGLNNFFIYPGQKL 132
Score = 30.4 bits (67), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 25/45 (55%), Gaps = 2/45 (4%)
Query: 95 ASCRTVEIVRGDTLWGLSRKYGVSIDAIKEANGLSGDTIYAGKKL 139
S TV+ GD+L ++ KYG + I NGL+ IY G+KL
Sbjct: 157 GSYYTVQ--AGDSLSLIASKYGTTYQNIMRLNGLNNFFIYPGQKL 199
>sp|Q7A1T4|SLE1_STAAW N-acetylmuramoyl-L-alanine amidase sle1 OS=Staphylococcus aureus
(strain MW2) GN=sle1 PE=3 SV=1
Length = 334
Score = 33.5 bits (75), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 21/30 (70%)
Query: 105 GDTLWGLSRKYGVSIDAIKEANGLSGDTIY 134
G+++W +S KYG+SI +K N L+ + I+
Sbjct: 34 GESVWAISNKYGISIAKLKSLNNLTSNLIF 63
Score = 30.4 bits (67), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 25/45 (55%), Gaps = 2/45 (4%)
Query: 95 ASCRTVEIVRGDTLWGLSRKYGVSIDAIKEANGLSGDTIYAGKKL 139
S TV+ GD+L ++ KYG + I NGL+ IY G+KL
Sbjct: 157 GSYYTVQ--AGDSLSLIASKYGTTYQKIMSLNGLNNFFIYPGQKL 199
Score = 30.4 bits (67), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 25/45 (55%), Gaps = 2/45 (4%)
Query: 95 ASCRTVEIVRGDTLWGLSRKYGVSIDAIKEANGLSGDTIYAGKKL 139
S TV+ GD+L ++ KYG + I NGL+ IY G+KL
Sbjct: 90 GSYYTVQ--AGDSLSLIASKYGTTYQNIMRLNGLNNFFIYPGQKL 132
>sp|P0C1U7|SLE1_STAAU N-acetylmuramoyl-L-alanine amidase sle1 OS=Staphylococcus aureus
GN=sle1 PE=4 SV=1
Length = 334
Score = 33.5 bits (75), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 21/30 (70%)
Query: 105 GDTLWGLSRKYGVSIDAIKEANGLSGDTIY 134
G+++W +S KYG+SI +K N L+ + I+
Sbjct: 34 GESVWAISNKYGISIAKLKSLNNLTSNLIF 63
Score = 30.4 bits (67), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 25/45 (55%), Gaps = 2/45 (4%)
Query: 95 ASCRTVEIVRGDTLWGLSRKYGVSIDAIKEANGLSGDTIYAGKKL 139
S TV+ GD+L ++ KYG + I NGL+ IY G+KL
Sbjct: 157 GSYYTVQ--AGDSLSLIASKYGTTYQKIMSLNGLNNFFIYPGQKL 199
Score = 30.4 bits (67), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 25/45 (55%), Gaps = 2/45 (4%)
Query: 95 ASCRTVEIVRGDTLWGLSRKYGVSIDAIKEANGLSGDTIYAGKKL 139
S TV+ GD+L ++ KYG + I NGL+ IY G+KL
Sbjct: 90 GSYYTVQ--AGDSLSLIASKYGTTYQNIMRLNGLNNFFIYPGQKL 132
>sp|Q6GC24|SLE1_STAAS N-acetylmuramoyl-L-alanine amidase sle1 OS=Staphylococcus aureus
(strain MSSA476) GN=sle1 PE=3 SV=1
Length = 334
Score = 33.5 bits (75), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 21/30 (70%)
Query: 105 GDTLWGLSRKYGVSIDAIKEANGLSGDTIY 134
G+++W +S KYG+SI +K N L+ + I+
Sbjct: 34 GESVWAISNKYGISIAKLKSLNNLTSNLIF 63
Score = 30.4 bits (67), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 25/45 (55%), Gaps = 2/45 (4%)
Query: 95 ASCRTVEIVRGDTLWGLSRKYGVSIDAIKEANGLSGDTIYAGKKL 139
S TV+ GD+L ++ KYG + I NGL+ IY G+KL
Sbjct: 157 GSYYTVQ--AGDSLSLIASKYGTTYQKIMSLNGLNNFFIYPGQKL 199
Score = 30.4 bits (67), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 25/45 (55%), Gaps = 2/45 (4%)
Query: 95 ASCRTVEIVRGDTLWGLSRKYGVSIDAIKEANGLSGDTIYAGKKL 139
S TV+ GD+L ++ KYG + I NGL+ IY G+KL
Sbjct: 90 GSYYTVQ--AGDSLSLIASKYGTTYQNIMRLNGLNNFFIYPGQKL 132
>sp|Q7A7E0|SLE1_STAAN N-acetylmuramoyl-L-alanine amidase sle1 OS=Staphylococcus aureus
(strain N315) GN=sle1 PE=1 SV=1
Length = 334
Score = 33.5 bits (75), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 21/30 (70%)
Query: 105 GDTLWGLSRKYGVSIDAIKEANGLSGDTIY 134
G+++W +S KYG+SI +K N L+ + I+
Sbjct: 34 GESVWAISNKYGISIAKLKSLNNLTSNLIF 63
Score = 30.4 bits (67), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 25/45 (55%), Gaps = 2/45 (4%)
Query: 95 ASCRTVEIVRGDTLWGLSRKYGVSIDAIKEANGLSGDTIYAGKKL 139
S TV+ GD+L ++ KYG + I NGL+ IY G+KL
Sbjct: 157 GSYYTVQ--AGDSLSLIASKYGTTYQKIMSLNGLNNFFIYPGQKL 199
Score = 30.4 bits (67), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 25/45 (55%), Gaps = 2/45 (4%)
Query: 95 ASCRTVEIVRGDTLWGLSRKYGVSIDAIKEANGLSGDTIYAGKKL 139
S TV+ GD+L ++ KYG + I NGL+ IY G+KL
Sbjct: 90 GSYYTVQ--AGDSLSLIASKYGTTYQNIMRLNGLNNFFIYPGQKL 132
>sp|Q5HIL2|SLE1_STAAC N-acetylmuramoyl-L-alanine amidase sle1 OS=Staphylococcus aureus
(strain COL) GN=sle1 PE=3 SV=1
Length = 334
Score = 33.5 bits (75), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 21/30 (70%)
Query: 105 GDTLWGLSRKYGVSIDAIKEANGLSGDTIY 134
G+++W +S KYG+SI +K N L+ + I+
Sbjct: 34 GESVWAISNKYGISIAKLKSLNNLTSNLIF 63
Score = 30.4 bits (67), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 25/45 (55%), Gaps = 2/45 (4%)
Query: 95 ASCRTVEIVRGDTLWGLSRKYGVSIDAIKEANGLSGDTIYAGKKL 139
S TV+ GD+L ++ KYG + I NGL+ IY G+KL
Sbjct: 157 GSYYTVQ--AGDSLSLIASKYGTTYQKIMSLNGLNNFFIYPGQKL 199
Score = 30.4 bits (67), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 25/45 (55%), Gaps = 2/45 (4%)
Query: 95 ASCRTVEIVRGDTLWGLSRKYGVSIDAIKEANGLSGDTIYAGKKL 139
S TV+ GD+L ++ KYG + I NGL+ IY G+KL
Sbjct: 90 GSYYTVQ--AGDSLSLIASKYGTTYQNIMRLNGLNNFFIYPGQKL 132
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.310 0.130 0.376
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 60,058,902
Number of Sequences: 539616
Number of extensions: 2544031
Number of successful extensions: 9628
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 121
Number of HSP's successfully gapped in prelim test: 91
Number of HSP's that attempted gapping in prelim test: 9219
Number of HSP's gapped (non-prelim): 488
length of query: 142
length of database: 191,569,459
effective HSP length: 105
effective length of query: 37
effective length of database: 134,909,779
effective search space: 4991661823
effective search space used: 4991661823
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 55 (25.8 bits)